Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A06
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 115140250
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2234201 characters in sequence are not A, C, G, or T
File 254 of 345
Found at i:86220024 original size:16 final size:16
Alignment explanation
Indices: 86219978--86220024 Score: 53
Period size: 16 Copynumber: 3.1 Consensus size: 16
86219968 AATAATAATA
*
86219978 ATAATAATATGA-AAT
1 ATAATAATATAACAAT
*
86219993 -TAATAATATAATAAT
1 ATAATAATATAACAAT
*
86220008 ATAATAATGTAACAAT
1 ATAATAATATAACAAT
86220024 A
1 A
86220025 ATAAGCATAA
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
14 10 0.37
15 3 0.11
16 14 0.52
ACGTcount: A:0.60, C:0.02, G:0.04, T:0.34
Consensus pattern (16 bp):
ATAATAATATAACAAT
Found at i:86226525 original size:47 final size:47
Alignment explanation
Indices: 86226471--86226614 Score: 180
Period size: 47 Copynumber: 3.1 Consensus size: 47
86226461 TTAGGATTTT
** *
86226471 ATGTGATGAATGTGAATGTGTATATATGAGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGTATATATGTGATAAGGCCGAATGGCCA
* * *
86226518 ATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGTATATATGTGATAAGGCCGAATGGCCA
** * * * *
86226565 ATGTGGGGAATATGAACATGTATATATGTGGTAAAGCCGAATGGCTA
1 ATGTGATGAATGTGAACATGTATATATGTGATAAGGCCGAATGGCCA
86226612 ATG
1 ATG
86226615 CGAAATATGT
Statistics
Matches: 82, Mismatches: 15, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
47 82 1.00
ACGTcount: A:0.33, C:0.10, G:0.31, T:0.27
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGTATATATGTGATAAGGCCGAATGGCCA
Found at i:86226748 original size:98 final size:96
Alignment explanation
Indices: 86226588--86226771 Score: 289
Period size: 98 Copynumber: 1.9 Consensus size: 96
86226578 GAACATGTAT
* * * *
86226588 ATATGTGGTAAAGCCGAATGGCTAATGCGAAATATGTATGAGATATGTATATGTGGTAAAGCCGA
1 ATATGTGATAAAGCCGAATGGCAAATGCAAAATATATATGAGATATGTATATGTGGTAAAGCCGA
86226653 ATGGCTAATGTGAAATATGTATGAGATATGC
66 ATGGCTAATGTGAAATATGTATGAGATATGC
86226684 ATATGTGATAAAGCCGAATGGTCAATATG-AAATATATATATGAGATATGTATATGTGGTAAAGC
1 ATATGTGATAAAGCCGAATGG-CAA-ATGCAAA-ATATATATGAGATATGTATATGTGGTAAAGC
*
86226748 CGAATGGCTAGTGTGAAATATGTA
63 CGAATGGCTAATGTGAAATATGTA
86226772 GGCGATGTGC
Statistics
Matches: 80, Mismatches: 5, Indels: 4
0.90 0.06 0.04
Matches are distributed among these distances:
96 20 0.25
97 4 0.05
98 56 0.70
ACGTcount: A:0.37, C:0.08, G:0.26, T:0.30
Consensus pattern (96 bp):
ATATGTGATAAAGCCGAATGGCAAATGCAAAATATATATGAGATATGTATATGTGGTAAAGCCGA
ATGGCTAATGTGAAATATGTATGAGATATGC
Found at i:86226787 original size:50 final size:48
Alignment explanation
Indices: 86226587--86226771 Score: 282
Period size: 48 Copynumber: 3.8 Consensus size: 48
86226577 TGAACATGTA
*
86226587 TATATGTGGTAAAGCCGAATGGCTAATGCGAAATATGTATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
86226635 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
* * * *
86226683 CATATGTGATAAAGCCGAATGG-TCAATATGAAATATATATATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCT-AATGTG-AA-ATATGTATGAGATATG
*
86226733 TATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTA
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTA
86226772 GGCGATGTGC
Statistics
Matches: 123, Mismatches: 10, Indels: 8
0.87 0.07 0.06
Matches are distributed among these distances:
47 1 0.01
48 78 0.63
49 4 0.03
50 39 0.32
51 1 0.01
ACGTcount: A:0.37, C:0.08, G:0.25, T:0.30
Consensus pattern (48 bp):
TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
Found at i:86226968 original size:37 final size:37
Alignment explanation
Indices: 86226918--86226989 Score: 126
Period size: 37 Copynumber: 1.9 Consensus size: 37
86226908 GGAAATATAT
*
86226918 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATAACTACGTGTGGAGATTTTG
*
86226955 TCCGGGTAAGACCCGATAACTTCGTGTGGAGATTT
1 TCCGGGTAAGACCCGATAACTACGTGTGGAGATTT
86226990 CGTCTGAGCT
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 33 1.00
ACGTcount: A:0.22, C:0.19, G:0.31, T:0.28
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATAACTACGTGTGGAGATTTTG
Found at i:86228304 original size:40 final size:40
Alignment explanation
Indices: 86228245--86228568 Score: 472
Period size: 40 Copynumber: 8.2 Consensus size: 40
86228235 GAGAATTGAG
*
86228245 AGTGATATATCCGGGCTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
*
86228285 AGTGATATATCCGGACTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* *
86228325 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
86228365 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
*
86228405 A-TGATATATCCGGGCTAAGTCCCAAAGAGCATTC-TGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* *
86228443 AGTGATGTATCCGGGCTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* **
86228483 AGTGATATATCCGTGCTAAACCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* * * * * * *
86228523 GGTGTTATATCCCGGCTAGGTCCCAAAGAGCAATCATGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
*
86228563 GGTGAT
1 AGTGAT
86228569 GTGTATTCGG
Statistics
Matches: 255, Mismatches: 27, Indels: 4
0.89 0.09 0.01
Matches are distributed among these distances:
38 5 0.02
39 62 0.24
40 188 0.74
ACGTcount: A:0.26, C:0.22, G:0.26, T:0.26
Consensus pattern (40 bp):
AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
Found at i:86228470 original size:158 final size:159
Alignment explanation
Indices: 86228247--86228554 Score: 474
Period size: 158 Copynumber: 1.9 Consensus size: 159
86228237 GAATTGAGAG
* *
86228247 TGATATATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATATATCCGGACTAAGTCCCGAA
1 TGATATATCCGGGCTAAGTCCCAAAGAGCATTCGTGCTAGTGATATATCCGGACTAAGTCCCGAA
* **
86228312 GAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATATATCC
66 GAGCATTCGTGCTAGTGATATATCCGGGCTAAACCCCGAAGAGCATTCATGCTAGTGATATATCC
* *
86228377 GGGCTAAGTCCCGAAGAGCATTCGTGCTA
131 CGGCTAAGTCCCAAAGAGCATTCGTGCTA
* * *
86228406 TGATATATCCGGGCTAAGTCCCAAAGAGCATTC-TGCTAGTGATGTATCCGGGCTAAGTTCCGAA
1 TGATATATCCGGGCTAAGTCCCAAAGAGCATTCGTGCTAGTGATATATCCGGACTAAGTCCCGAA
* * * *
86228470 GAGCATTCGTGCTAGTGATATATCCGTGCTAAACCCCGAAGAGCATTCGTGCTGGTGTTATATCC
66 GAGCATTCGTGCTAGTGATATATCCGGGCTAAACCCCGAAGAGCATTCATGCTAGTGATATATCC
*
86228535 CGGCTAGGTCCCAAAGAGCA
131 CGGCTAAGTCCCAAAGAGCA
86228555 ATCATGCTGG
Statistics
Matches: 134, Mismatches: 15, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
158 103 0.77
159 31 0.23
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.26
Consensus pattern (159 bp):
TGATATATCCGGGCTAAGTCCCAAAGAGCATTCGTGCTAGTGATATATCCGGACTAAGTCCCGAA
GAGCATTCGTGCTAGTGATATATCCGGGCTAAACCCCGAAGAGCATTCATGCTAGTGATATATCC
CGGCTAAGTCCCAAAGAGCATTCGTGCTA
Found at i:86232096 original size:48 final size:48
Alignment explanation
Indices: 86232044--86232189 Score: 170
Period size: 47 Copynumber: 3.1 Consensus size: 48
86232034 TTAGGATTTT
** *
86232044 ATGTGGATGAATGTGAATGTGTATATATGAGATAAGGCCGAATGGCCA
1 ATGTGGATGAATGTGAACATGTATATATGTGATAAGGCCGAATGGCCA
* * *
86232092 ATGT-GATGAATGTGAGCATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGGATGAATGTGAACATGTATATATGTGATAAGGCCGAATGGCCA
* * * * *
86232139 ATGTGG-GGAATATGAAACATGTATATATGTGGTAAAGCCGAATGGCTA
1 ATGTGGATGAATGTG-AACATGTATATATGTGATAAGGCCGAATGGCCA
86232187 ATG
1 ATG
86232190 CGAAATATGT
Statistics
Matches: 82, Mismatches: 14, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
47 47 0.57
48 35 0.43
ACGTcount: A:0.33, C:0.10, G:0.31, T:0.27
Consensus pattern (48 bp):
ATGTGGATGAATGTGAACATGTATATATGTGATAAGGCCGAATGGCCA
Found at i:86232219 original size:47 final size:47
Alignment explanation
Indices: 86232162--86232343 Score: 235
Period size: 47 Copynumber: 3.8 Consensus size: 47
86232152 GAAACATGTA
86232162 TATATGTGGTAAAGCCGAATGGCTA-ATGCGAAATATGTATGAATATG
1 TATATGTGGTAAAGCCGAATGGCTAGATG-GAAATATGTATGAATATG
86232209 TATATGTGGTAAAGCCGAATGGCTA-ATGTGAAATATGTATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCTAGATG-GAAATATGTATGA-ATATG
* * * * * *
86232257 CATATGTGATAAAGCCGAATGGTCAATATGAAATATATATATGAATATG
1 TATATGTGGTAAAGCCGAATGG-CTAGATGGAA-ATATGTATGAATATG
*
86232306 TATA-GTGGTAAAGCCGAATGGCTAGTTGGAAATATGTA
1 TATATGTGGTAAAGCCGAATGGCTAGATGGAAATATGTA
86232344 GGCGATGTGC
Statistics
Matches: 118, Mismatches: 13, Indels: 9
0.84 0.09 0.06
Matches are distributed among these distances:
46 6 0.05
47 47 0.40
48 41 0.35
49 12 0.10
50 12 0.10
ACGTcount: A:0.37, C:0.08, G:0.25, T:0.30
Consensus pattern (47 bp):
TATATGTGGTAAAGCCGAATGGCTAGATGGAAATATGTATGAATATG
Found at i:86232226 original size:95 final size:96
Alignment explanation
Indices: 86232113--86232327 Score: 235
Period size: 95 Copynumber: 2.2 Consensus size: 96
86232103 GTGAGCATGC
* * *
86232113 ATATGTGTGATAAGGCCGAATGGCCAATGTGGGGAATATGAAACATG-TAT-ATATGTGGTAAAG
1 ATATGTG-G-TAAAGCCGAATGGCCAATGT--GAAATATGAAACA-GATATCATATGTGATAAAG
* * *
86232176 CCGAATGG-CTA-ATGCGAA-ATATGTATGAATATGT
61 CCGAATGGTCAATATG-AAATATATATATGAATATGT
* * **
86232210 ATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGCATATGTGATAAAGCCGA
1 ATATGTGGTAAAGCCGAATGGCCAATGTGAAATATGAAACAGATAT-CATATGTGATAAAGCCGA
86232275 ATGGTCAATATGAAATATATATATGAATATGT
65 ATGGTCAATATGAAATATATATATGAATATGT
86232307 ATA-GTGGTAAAGCCGAATGGC
1 ATATGTGGTAAAGCCGAATGGC
86232328 TAGTTGGAAA
Statistics
Matches: 102, Mismatches: 10, Indels: 13
0.82 0.08 0.10
Matches are distributed among these distances:
92 1 0.01
93 12 0.12
95 38 0.37
96 23 0.23
97 28 0.27
ACGTcount: A:0.37, C:0.09, G:0.26, T:0.28
Consensus pattern (96 bp):
ATATGTGGTAAAGCCGAATGGCCAATGTGAAATATGAAACAGATATCATATGTGATAAAGCCGAA
TGGTCAATATGAAATATATATATGAATATGT
Found at i:86232275 original size:48 final size:48
Alignment explanation
Indices: 86232162--86232343 Score: 239
Period size: 48 Copynumber: 3.8 Consensus size: 48
86232152 GAAACATGTA
*
86232162 TATATGTGGTAAAGCCGAATGGCTAATGCGAAATATGTATGA-ATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
86232209 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
* * * *
86232257 CATATGTGATAAAGCCGAATGG-TCAATATGAAATATATAT-ATGAATATG
1 TATATGTGGTAAAGCCGAATGGCT-AATGTGAAATATGTATGA-G-ATATG
*
86232306 TATA-GTGGTAAAGCCGAATGGCTAGT-TGGAAATATGTA
1 TATATGTGGTAAAGCCGAATGGCTAATGT-GAAATATGTA
86232344 GGCGATGTGC
Statistics
Matches: 120, Mismatches: 9, Indels: 11
0.86 0.06 0.08
Matches are distributed among these distances:
47 44 0.37
48 67 0.56
49 9 0.08
ACGTcount: A:0.37, C:0.08, G:0.25, T:0.30
Consensus pattern (48 bp):
TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
Found at i:86232536 original size:36 final size:36
Alignment explanation
Indices: 86232489--86232559 Score: 124
Period size: 36 Copynumber: 2.0 Consensus size: 36
86232479 GGAAATATAT
*
86232489 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTG
1 TCCGGGTAAGACCCGATAACTACGTGTGGAGATTTG
*
86232525 TCCGGGTAAGACCCGATAACTTCGTGTGGAGATTT
1 TCCGGGTAAGACCCGATAACTACGTGTGGAGATTT
86232560 CGTCTTAGCT
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
36 33 1.00
ACGTcount: A:0.23, C:0.20, G:0.31, T:0.27
Consensus pattern (36 bp):
TCCGGGTAAGACCCGATAACTACGTGTGGAGATTTG
Found at i:86234514 original size:40 final size:40
Alignment explanation
Indices: 86234444--86234648 Score: 290
Period size: 40 Copynumber: 5.2 Consensus size: 40
86234434 CGGATGATAA
* *
86234444 CGAAGGCATTTGTGCTAGTGACTA-ATTCCGGGCTAAGTCC
1 CGAAGGCATTTGTGCGAGTTACTATA-TCCGGGCTAAGTCC
* *
86234484 CGAAGGCATTTATGCAAGTTACTATATCCGGGCTAAGTCC
1 CGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCC
86234524 CGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCC
1 CGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCC
* *
86234564 CGAAGGCATTTGTGCGAGCTACTATATCCGGGCTAAGTCT
1 CGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCC
* * *
86234604 CGAAGGCATTTGAGCGAG-TAGCTATATCC-GGTTAAATCC
1 CGAAGGCATTTGTGCGAGTTA-CTATATCCGGGCTAAGTCC
86234643 CGAAGG
1 CGAAGG
86234649 TACTTGGTTT
Statistics
Matches: 152, Mismatches: 11, Indels: 5
0.90 0.07 0.03
Matches are distributed among these distances:
39 15 0.10
40 136 0.89
41 1 0.01
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
CGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCC
Found at i:86242666 original size:92 final size:93
Alignment explanation
Indices: 86242497--86242666 Score: 288
Period size: 93 Copynumber: 1.8 Consensus size: 93
86242487 GCCCCTAAGT
* *
86242497 GAACTCAGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
86242562 CGAGTTCAGATGCCTAGTTACATCTCAC
66 CGAGTTCAGATGCCTAGTTACATCTCAC
* *
86242590 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCAT-AGTGAACTCGGACTCAACTCAA
1 GAACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
86242654 CGAGTTCGGATGC
66 CGAGTTCAGATGC
86242667 TCAACCATCC
Statistics
Matches: 72, Mismatches: 5, Indels: 1
0.92 0.06 0.01
Matches are distributed among these distances:
92 34 0.47
93 38 0.53
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (93 bp):
GAACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCAGATGCCTAGTTACATCTCAC
Found at i:86249886 original size:48 final size:48
Alignment explanation
Indices: 86249812--86250045 Score: 260
Period size: 48 Copynumber: 4.9 Consensus size: 48
86249802 TAAAATGGCA
* * * *
86249812 ATGCCATGGCCCAGACATGGTTTTACACTAGCTCACATGTCGAGGCCG
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATATCAAGGCCG
* * * *
86249860 ATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCGTGTCAATGCCG
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATATCAAGGCCG
* **
86249908 ATGCCATG-CCCTAGACATGGTCTTACACTAGCAT-ACATATCAACGCTA
1 ATGCCATGTCCC-AGACATGGTCTTACACTAGC-TCACATATCAAGGCCG
* ** *
86249956 ATGCCATGTCCCAGACATGGTCTTACACTGGCTTTCATAAT-ATGGCCG
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCTCACAT-ATCAAGGCCG
*
86250004 ATGCCATGTCCCGGACATGGTCTTACACTAGCAT-ACATATCA
1 ATGCCATGTCCCAGACATGGTCTTACACTAGC-TCACATATCA
86250046 CCCAAATGTC
Statistics
Matches: 158, Mismatches: 21, Indels: 14
0.82 0.11 0.07
Matches are distributed among these distances:
47 6 0.04
48 145 0.92
49 7 0.04
ACGTcount: A:0.25, C:0.29, G:0.20, T:0.26
Consensus pattern (48 bp):
ATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATATCAAGGCCG
Found at i:86249976 original size:96 final size:95
Alignment explanation
Indices: 86249812--86250045 Score: 294
Period size: 96 Copynumber: 2.4 Consensus size: 95
86249802 TAAAATGGCA
* * * * *
86249812 ATGCCATGGCCCAGACATGGTTTTACACTAGC-TCACATGTCGAGGCCGATGCCATGTCCCAGAC
1 ATGCCAT-GCCCAGACATGGTCTTACACTAGCAT-ACATATCAACGCCAATGCCATGTCCCAGAC
* *
86249876 ATGGTCTTACACTAGCTCTCGT-GTCAAT-GCCG
64 ATGGTCTTACACTAGCTCTCATAAT--ATGGCCG
*
86249908 ATGCCATGCCCTAGACATGGTCTTACACTAGCATACATATCAACGCTAATGCCATGTCCCAGACA
1 ATGCCATGCCC-AGACATGGTCTTACACTAGCATACATATCAACGCCAATGCCATGTCCCAGACA
* *
86249973 TGGTCTTACACTGGCTTTCATAATATGGCCG
65 TGGTCTTACACTAGCTCTCATAATATGGCCG
*
86250004 ATGCCATGTCCCGGACATGGTCTTACACTAGCATACATATCA
1 ATGCCATG-CCCAGACATGGTCTTACACTAGCATACATATCA
86250046 CCCAAATGTC
Statistics
Matches: 122, Mismatches: 11, Indels: 10
0.85 0.08 0.07
Matches are distributed among these distances:
95 6 0.05
96 111 0.91
97 5 0.04
ACGTcount: A:0.25, C:0.29, G:0.20, T:0.26
Consensus pattern (95 bp):
ATGCCATGCCCAGACATGGTCTTACACTAGCATACATATCAACGCCAATGCCATGTCCCAGACAT
GGTCTTACACTAGCTCTCATAATATGGCCG
Found at i:86251637 original size:29 final size:29
Alignment explanation
Indices: 86251604--86251660 Score: 71
Period size: 29 Copynumber: 2.0 Consensus size: 29
86251594 CCAAAGCACT
**
86251604 GATA-TCATGGCCTGAAGCCAAAATCAGTC
1 GATATTCATGGCCCAAAGCC-AAATCAGTC
*
86251633 GATATTTATGGCCCAAAGCCAAATCAGT
1 GATATTCATGGCCCAAAGCCAAATCAGT
86251661 GTATATCGCA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
29 12 0.50
30 12 0.50
ACGTcount: A:0.35, C:0.23, G:0.19, T:0.23
Consensus pattern (29 bp):
GATATTCATGGCCCAAAGCCAAATCAGTC
Found at i:86252598 original size:13 final size:14
Alignment explanation
Indices: 86252574--86252602 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
86252564 ATTTATCTAA
86252574 TTACTAAATTAACC
1 TTACTAAATTAACC
86252588 TTACT-AATTAACC
1 TTACTAAATTAACC
86252601 TT
1 TT
86252603 TAAAAAAATT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 10 0.67
14 5 0.33
ACGTcount: A:0.38, C:0.21, G:0.00, T:0.41
Consensus pattern (14 bp):
TTACTAAATTAACC
Found at i:86257388 original size:14 final size:14
Alignment explanation
Indices: 86257362--86257400 Score: 51
Period size: 14 Copynumber: 2.8 Consensus size: 14
86257352 TTGTTTCATT
*
86257362 GAAAATGACTTCCA
1 GAAAATGATTTCCA
* *
86257376 GAAATTGATTTCCG
1 GAAAATGATTTCCA
86257390 GAAAATGATTT
1 GAAAATGATTT
86257401 ATTTTTCTGG
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.38, C:0.13, G:0.18, T:0.31
Consensus pattern (14 bp):
GAAAATGATTTCCA
Found at i:86257882 original size:206 final size:206
Alignment explanation
Indices: 86257528--86257942 Score: 830
Period size: 206 Copynumber: 2.0 Consensus size: 206
86257518 ATCATTTGAG
86257528 ATTTTCTTATCTTTTTCATTGTTTAATTGAATATATTTTTATTATAATTTTATATTTTCATTGTT
1 ATTTTCTTATCTTTTTCATTGTTTAATTGAATATATTTTTATTATAATTTTATATTTTCATTGTT
86257593 TTTGCATATATTAAAAATATTATGTTAAATTCAAATTCATTACAGCGTCATTTTTTAATTACATG
66 TTTGCATATATTAAAAATATTATGTTAAATTCAAATTCATTACAGCGTCATTTTTTAATTACATG
86257658 ACAATTAAGTGAGTATTTTTTTATTTAAAAATATGACATCAACAAAAATGACCAAAAAAAATTAA
131 ACAATTAAGTGAGTATTTTTTTATTTAAAAATATGACATCAACAAAAATGACCAAAAAAAATTAA
86257723 CGATGTCAACA
196 CGATGTCAACA
86257734 ATTTTCTTATCTTTTTCATTGTTTAATTGAATATATTTTTATTATAATTTTATATTTTCATTGTT
1 ATTTTCTTATCTTTTTCATTGTTTAATTGAATATATTTTTATTATAATTTTATATTTTCATTGTT
86257799 TTTGCATATATTAAAAATATTATGTTAAATTCAAATTCATTACAGCGTCATTTTTTAATTACATG
66 TTTGCATATATTAAAAATATTATGTTAAATTCAAATTCATTACAGCGTCATTTTTTAATTACATG
86257864 ACAATTAAGTGAGTATTTTTTTATTTAAAAATATGACATCAACAAAAATGACCAAAAAAAATTAA
131 ACAATTAAGTGAGTATTTTTTTATTTAAAAATATGACATCAACAAAAATGACCAAAAAAAATTAA
86257929 CGATGTCAACA
196 CGATGTCAACA
86257940 ATT
1 ATT
86257943 GGACTTGATT
Statistics
Matches: 209, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
206 209 1.00
ACGTcount: A:0.38, C:0.10, G:0.07, T:0.45
Consensus pattern (206 bp):
ATTTTCTTATCTTTTTCATTGTTTAATTGAATATATTTTTATTATAATTTTATATTTTCATTGTT
TTTGCATATATTAAAAATATTATGTTAAATTCAAATTCATTACAGCGTCATTTTTTAATTACATG
ACAATTAAGTGAGTATTTTTTTATTTAAAAATATGACATCAACAAAAATGACCAAAAAAAATTAA
CGATGTCAACA
Found at i:86258090 original size:15 final size:15
Alignment explanation
Indices: 86258070--86258121 Score: 50
Period size: 15 Copynumber: 3.2 Consensus size: 15
86258060 ACTACAAAAC
86258070 ATTTATTATTAATAT
1 ATTTATTATTAATAT
*
86258085 ATTTATAATTATAATAAAT
1 ATTTATTA-T-TAAT--AT
*
86258104 ATTTATTATTAAAAT
1 ATTTATTATTAATAT
86258119 ATT
1 ATT
86258122 AATATTGAAT
Statistics
Matches: 30, Mismatches: 3, Indels: 8
0.73 0.07 0.20
Matches are distributed among these distances:
15 12 0.40
16 1 0.03
17 7 0.23
18 1 0.03
19 9 0.30
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (15 bp):
ATTTATTATTAATAT
Found at i:86258107 original size:19 final size:19
Alignment explanation
Indices: 86258083--86258119 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
86258073 TATTATTAAT
*
86258083 ATATTTATAATTATAATAA
1 ATATTTATAATTAAAATAA
*
86258102 ATATTTATTATTAAAATA
1 ATATTTATAATTAAAATA
86258120 TTAATATTGA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (19 bp):
ATATTTATAATTAAAATAA
Found at i:86258242 original size:22 final size:22
Alignment explanation
Indices: 86258202--86258257 Score: 62
Period size: 22 Copynumber: 2.6 Consensus size: 22
86258192 AATAAAATTG
*
86258202 AAATATTAAA-TA-ATTTATTA
1 AAATAATAAATTATATTTATTA
86258222 AAATAATAAATTATATTTATTA
1 AAATAATAAATTATATTTATTA
* * *
86258244 TATTAATAATTTAT
1 AAATAATAAATTAT
86258258 TATATGACTA
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
20 9 0.30
21 2 0.07
22 19 0.63
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (22 bp):
AAATAATAAATTATATTTATTA
Found at i:86263182 original size:43 final size:42
Alignment explanation
Indices: 86263135--86263216 Score: 101
Period size: 42 Copynumber: 1.9 Consensus size: 42
86263125 CTTACATGGG
** * *
86263135 ATCTCATATCGATGCCAATAGCCTAGCTATGGTCTTACACTAA
1 ATCTCATAAAGATGCC-ATAGCCCAGATATGGTCTTACACTAA
* *
86263178 ATCTCATAAAGATGTCATATCCCAGATATGGTCTTACAC
1 ATCTCATAAAGATGCCATAGCCCAGATATGGTCTTACAC
86263217 GTAATCTTAG
Statistics
Matches: 33, Mismatches: 6, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
42 20 0.61
43 13 0.39
ACGTcount: A:0.32, C:0.24, G:0.13, T:0.30
Consensus pattern (42 bp):
ATCTCATAAAGATGCCATAGCCCAGATATGGTCTTACACTAA
Found at i:86272912 original size:64 final size:64
Alignment explanation
Indices: 86272746--86272918 Score: 179
Period size: 68 Copynumber: 2.6 Consensus size: 64
86272736 TGGATGATAC
* * * *
86272746 AGATAGTATGTAGCTAGGTCACATGTATGGTGCTAAGTGCACATCATGTGTACAAGAGAGCTACA
1 AGATA-TATGTAGCTAGGTCGCATGTGT-GTACTAAGTGCACACCATGTGTACAAGAGAGCTAC-
86272811 AG
63 AG
* * * *
86272813 ACATTATGATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAG-ACAAGAGAGCTA
1 AGA-TAT-ATGTAGCTAGGTCGCATGTGTG-TACTAAGTGCACACCATGT-GTACAAGAGAGCTA
86272877 C-G
62 CAG
*
86272879 GGATATATGTAGCTAGGTCGCATGTGTAGTACTAAGTGCA
1 AGATATATGTAGCTAGGTCGCATGTGT-GTACTAAGTGCA
86272919 GGCTACTATG
Statistics
Matches: 88, Mismatches: 13, Indels: 13
0.77 0.11 0.11
Matches are distributed among these distances:
64 29 0.33
65 4 0.05
66 2 0.02
67 4 0.05
68 48 0.55
69 1 0.01
ACGTcount: A:0.31, C:0.15, G:0.28, T:0.27
Consensus pattern (64 bp):
AGATATATGTAGCTAGGTCGCATGTGTGTACTAAGTGCACACCATGTGTACAAGAGAGCTACAG
Found at i:86272961 original size:51 final size:49
Alignment explanation
Indices: 86272899--86273034 Score: 164
Period size: 51 Copynumber: 2.7 Consensus size: 49
86272889 AGCTAGGTCG
*
86272899 CATGTGTAGTACTAAGTGCAGGCTACTATGCATACCCAATAACTTCGATCA
1 CATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCAATAA-TT-GATCA
* * * ** * *
86272950 CGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCG
1 CATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCAATAATTGATCA
* *
86272999 TATGTGTAGTACTAAGTGTAGGCTACTATGCGTACC
1 CATGTGTAGTACTAAGTGCAGGCTACTATGCGTACC
86273035 AGATAGTTTG
Statistics
Matches: 72, Mismatches: 13, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
49 34 0.47
50 2 0.03
51 36 0.50
ACGTcount: A:0.26, C:0.20, G:0.24, T:0.29
Consensus pattern (49 bp):
CATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCAATAATTGATCA
Found at i:86273034 original size:49 final size:51
Alignment explanation
Indices: 86272894--86273039 Score: 181
Period size: 49 Copynumber: 2.9 Consensus size: 51
86272884 TATGTAGCTA
*
86272894 GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCATACCCA-ATAACTTC
1 GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTA-CCAGATAACTTC
* * * * * *
86272945 GATCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAA-TT-
1 GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATAACTTC
* *
86272994 GGTCGTATGTGTAGTACTAAGTGTAGGCTACTATGCGTACCAGATA
1 GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATA
86273040 GTTTGGCTAC
Statistics
Matches: 79, Mismatches: 15, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
49 38 0.48
50 4 0.05
51 37 0.47
ACGTcount: A:0.27, C:0.19, G:0.25, T:0.29
Consensus pattern (51 bp):
GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATAACTTC
Found at i:86282514 original size:50 final size:51
Alignment explanation
Indices: 86282447--86282638 Score: 197
Period size: 51 Copynumber: 3.8 Consensus size: 51
86282437 TAAAATGGTT
* * * *
86282447 TTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGAT-GG
1 TTAGGTCACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCCGATAGC
*
86282497 TTAGGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCCGATAGC
1 TTAGGTCACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCCGATAGC
* * * * * ***
86282548 TTTGATCACATGTGTGGTACTAAGTACAGGCCACTATGTGTAAAAGATAGC
1 TTAGGTCACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCCGATAGC
* * * * * * *
86282599 TTTGGTCACAAGTGTGGTACTATGTGAAGGCCACTTTGTG
1 TTAGGTCACATGTGTAGTACTAAGTGCAGGCTACTATGTG
86282639 AAGAAGGTAG
Statistics
Matches: 121, Mismatches: 20, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
50 44 0.36
51 77 0.64
ACGTcount: A:0.24, C:0.17, G:0.28, T:0.30
Consensus pattern (51 bp):
TTAGGTCACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCCGATAGC
Found at i:86282650 original size:51 final size:51
Alignment explanation
Indices: 86282508--86282684 Score: 171
Period size: 51 Copynumber: 3.5 Consensus size: 51
86282498 TAGGTCGCAT
* * * * *** * *
86282508 GTGTAGTACTAAGTGCAGGCTACTATGTGTACCCGATAGCTTTGATCACAT
1 GTGTGGTACTATGTGAAGGCCACTATGTGTAAAAGATAGCTTTGGTCACAA
*
86282559 GTGTGGTACTAAGT-ACAGGCCACTATGTGTAAAAGATAGCTTTGGTCACAA
1 GTGTGGTACTATGTGA-AGGCCACTATGTGTAAAAGATAGCTTTGGTCACAA
* * *
86282610 GTGTGGTACTATGTGAAGGCCACTTTGTG-AAGAAGGTAGCTTT-GACTACAA
1 GTGTGGTACTATGTGAAGGCCACTATGTGTAA-AAGATAGCTTTGGTC-ACAA
* *
86282661 GGGTGGTACTATGTGCAGGCCACT
1 GTGTGGTACTATGTGAAGGCCACT
86282685 GGGCATCCGA
Statistics
Matches: 108, Mismatches: 14, Indels: 8
0.83 0.11 0.06
Matches are distributed among these distances:
50 4 0.04
51 103 0.95
52 1 0.01
ACGTcount: A:0.27, C:0.17, G:0.28, T:0.29
Consensus pattern (51 bp):
GTGTGGTACTATGTGAAGGCCACTATGTGTAAAAGATAGCTTTGGTCACAA
Found at i:86287122 original size:12 final size:12
Alignment explanation
Indices: 86287102--86287133 Score: 55
Period size: 12 Copynumber: 2.7 Consensus size: 12
86287092 ATATGCATAT
86287102 ATACTTAAACCA
1 ATACTTAAACCA
*
86287114 ATTCTTAAACCA
1 ATACTTAAACCA
86287126 ATACTTAA
1 ATACTTAA
86287134 GCCATTTTGT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.47, C:0.22, G:0.00, T:0.31
Consensus pattern (12 bp):
ATACTTAAACCA
Found at i:86287709 original size:42 final size:42
Alignment explanation
Indices: 86287601--86287709 Score: 103
Period size: 43 Copynumber: 2.6 Consensus size: 42
86287591 ATACCAATGC
* * ** * *
86287601 CATATCCCGGATATGGTCTTACATGGGATCTCATATTGATGC
1 CATATCCCAGATATGGTCTTACACGAAATCTCATATAGATGA
* * * *
86287643 CAACAGCCTA-ACTATGGGCTTACACGAAATCTCATATAGATGA
1 C-ATATCCCAGA-TATGGTCTTACACGAAATCTCATATAGATGA
86287686 CATATCCCAGATATGGTCTTACAC
1 CATATCCCAGATATGGTCTTACAC
86287710 ATAATTTTAG
Statistics
Matches: 50, Mismatches: 14, Indels: 6
0.71 0.20 0.09
Matches are distributed among these distances:
42 19 0.38
43 31 0.62
ACGTcount: A:0.30, C:0.24, G:0.17, T:0.28
Consensus pattern (42 bp):
CATATCCCAGATATGGTCTTACACGAAATCTCATATAGATGA
Found at i:86295945 original size:40 final size:40
Alignment explanation
Indices: 86295888--86296091 Score: 247
Period size: 40 Copynumber: 5.1 Consensus size: 40
86295878 TCGAATGATG
* *
86295888 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATA
*
86295928 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTA-A
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA
*
86295967 TTCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA
* *
86296007 TCCGGGTTAAGTCCCGAAGGCATTTGTGCTAGTTACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA
* * **
86296047 ACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGCTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATA
86296087 TCCGG
1 TCCGG
86296092 TTAAATTCCG
Statistics
Matches: 143, Mismatches: 14, Indels: 14
0.84 0.08 0.08
Matches are distributed among these distances:
39 38 0.27
40 97 0.68
41 8 0.06
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA
Found at i:86296024 original size:79 final size:81
Alignment explanation
Indices: 86295888--86296072 Score: 245
Period size: 79 Copynumber: 2.3 Consensus size: 81
86295878 TCGAATGATG
*
86295888 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATT
86295952 TGTGCGAGTTACTA-A
66 TGTGCGAGTTACTATA
* * **
86295967 TTCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAATCCGGACTAAGAT-CCGAAGGCA
*
86296029 TTTGTGCTAGTTACTATA
64 TTTGTGCGAGTTACTATA
* *
86296047 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
86296073 AACGAGTAGC
Statistics
Matches: 93, Mismatches: 8, Indels: 8
0.85 0.07 0.07
Matches are distributed among these distances:
78 1 0.01
79 59 0.63
80 33 0.35
ACGTcount: A:0.24, C:0.22, G:0.27, T:0.27
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATT
TGTGCGAGTTACTATA
Found at i:86296094 original size:79 final size:78
Alignment explanation
Indices: 86295889--86296105 Score: 237
Period size: 79 Copynumber: 2.7 Consensus size: 78
86295879 CGAATGATGT
* *
86295889 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGT-GACTATATCCGGACTAAGATCCGAAGGCATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTAG-CTATATCCGG-TTAAG-TCCGAAGGCATT
*
86295952 TGTGCGAGTTACTAATT
62 TGTGCGAGTTACTAATA
*
86295969 CCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTA-CTAAATCCGGGTTAAGTCCCGAAGGCATTT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TAGCTATATCC-GGTTAAGT-CCGAAGGCATTT
*
86296032 GTGCTAGTTACT-ATAA
63 GTGCGAGTTACTAAT-A
* ** *
86296048 CCGGGCTATGTCCCGAAGGCATTTGAACGAGTAGCTATATCCGGTTAAATTCCGAAGG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTAGCTATATCCGGTT-AAGTCCGAAGG
86296106 TACGTGATTC
Statistics
Matches: 118, Mismatches: 10, Indels: 19
0.80 0.07 0.13
Matches are distributed among these distances:
78 3 0.03
79 67 0.57
80 48 0.41
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (78 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTAGCTATATCCGGTTAAGTCCGAAGGCATTTGTG
CGAGTTACTAATA
Found at i:86304043 original size:27 final size:26
Alignment explanation
Indices: 86303932--86304160 Score: 241
Period size: 27 Copynumber: 8.6 Consensus size: 26
86303922 TTAGTTTACC
86303932 AAATTACTGAAATACTCC-CAG-TTGTA
1 AAATTACTGAAATAC-CCTC-GTTTGTA
* *
86303958 AAATTAC-CAAAGTACCGC-CGGTTTATA
1 AAATTACTGAAA-TACC-CTC-GTTTGTA
* * * *
86303985 AAATTACCGAAATATCGTCGATTGTA
1 AAATTACTGAAATACCCTCGTTTGTA
86304011 AAATTACTGAAATACCCTCGTTTTGTA
1 AAATTACTGAAATACCCTCG-TTTGTA
** *
86304038 AAATTACCAAAATACCCTCAGTTTGCA
1 AAATTACTGAAATACCCTC-GTTTGTA
*
86304065 AAATTACTGAGATACCCTCGATTTGTA
1 AAATTACTGAAATACCCTCG-TTTGTA
*
86304092 AAATTACTGAAATACTCTCAGTTTGTA
1 AAATTACTGAAATACCCTC-GTTTGTA
86304119 AAATTACTGAAATACCCTCGATTTGTA
1 AAATTACTGAAATACCCTCG-TTTGTA
86304146 AAATTACTGAAATAC
1 AAATTACTGAAATAC
86304161 TCCTGTAAGA
Statistics
Matches: 171, Mismatches: 22, Indels: 19
0.81 0.10 0.09
Matches are distributed among these distances:
25 4 0.02
26 37 0.22
27 125 0.73
28 5 0.03
ACGTcount: A:0.38, C:0.19, G:0.12, T:0.31
Consensus pattern (26 bp):
AAATTACTGAAATACCCTCGTTTGTA
Found at i:86304122 original size:81 final size:79
Alignment explanation
Indices: 86303932--86304160 Score: 284
Period size: 81 Copynumber: 2.9 Consensus size: 79
86303922 TTAGTTTACC
* * * *
86303932 AAATTACTGAAATACTCCCAG-TTGTAAAATTACCAAAGTACCGC-CGGTTTATAAAATTACCGA
1 AAATTACTGAAATACTCTCAGTTTGTAAAATTACCAAAATACC-CTC-GTTTGTAAAATTACTGA
* *
86303995 AATATCGTCGATTGTA
64 AATACCCTCGATTGTA
* *
86304011 AAATTACTGAAATACCCTC-GTTTTGTAAAATTACCAAAATACCCTCAGTTTGCAAAATTACTGA
1 AAATTACTGAAATACTCTCAG-TTTGTAAAATTACCAAAATACCCTC-GTTTGTAAAATTACTGA
*
86304075 GATACCCTCGATTTGTA
64 AATACCCTCGA-TTGTA
**
86304092 AAATTACTGAAATACTCTCAGTTTGTAAAATTACTGAAATACCCTCGATTTGTAAAATTACTGAA
1 AAATTACTGAAATACTCTCAGTTTGTAAAATTACCAAAATACCCTCG-TTTGTAAAATTACTGAA
86304157 ATAC
65 ATAC
86304161 TCCTGTAAGA
Statistics
Matches: 129, Mismatches: 15, Indels: 10
0.84 0.10 0.06
Matches are distributed among these distances:
78 1 0.01
79 18 0.14
80 44 0.34
81 65 0.50
82 1 0.01
ACGTcount: A:0.38, C:0.19, G:0.12, T:0.31
Consensus pattern (79 bp):
AAATTACTGAAATACTCTCAGTTTGTAAAATTACCAAAATACCCTCGTTTGTAAAATTACTGAAA
TACCCTCGATTGTA
Found at i:86304161 original size:54 final size:54
Alignment explanation
Indices: 86303932--86304162 Score: 292
Period size: 54 Copynumber: 4.3 Consensus size: 54
86303922 TTAGTTTACC
* * * *
86303932 AAATTACTGAAATACTCCCAG-TTGTAAAATTAC-CAAAGTACCGC-CGGTTTATA
1 AAATTACTGAAATACTCTCAGTTTGTAAAATTACTGAAA-TACC-CTCGATTTGTA
* * *
86303985 AAATTACCGAAATA-TCGTC-GATTGTAAAATTACTGAAATACCCTCGTTTTGTA
1 AAATTACTGAAATACTC-TCAGTTTGTAAAATTACTGAAATACCCTCGATTTGTA
** * * *
86304038 AAATTACCAAAATACCCTCAGTTTGCAAAATTACTGAGATACCCTCGATTTGTA
1 AAATTACTGAAATACTCTCAGTTTGTAAAATTACTGAAATACCCTCGATTTGTA
86304092 AAATTACTGAAATACTCTCAGTTTGTAAAATTACTGAAATACCCTCGATTTGTA
1 AAATTACTGAAATACTCTCAGTTTGTAAAATTACTGAAATACCCTCGATTTGTA
86304146 AAATTACTGAAATACTC
1 AAATTACTGAAATACTC
86304163 CTGTAAGATA
Statistics
Matches: 156, Mismatches: 16, Indels: 11
0.85 0.09 0.06
Matches are distributed among these distances:
52 4 0.03
53 52 0.33
54 100 0.64
ACGTcount: A:0.38, C:0.19, G:0.12, T:0.32
Consensus pattern (54 bp):
AAATTACTGAAATACTCTCAGTTTGTAAAATTACTGAAATACCCTCGATTTGTA
Found at i:86304202 original size:27 final size:27
Alignment explanation
Indices: 86304172--86304341 Score: 187
Period size: 27 Copynumber: 6.3 Consensus size: 27
86304162 CCTGTAAGAT
**
86304172 AGAATTACCATTTTACCCTTGATTTAC
1 AGAATTACCATTTTACCCTCAATTTAC
** * *
86304199 AGAATTTTCGTTTTACCCTCAATTTAT
1 AGAATTACCATTTTACCCTCAATTTAC
* * *
86304226 AGAATTACTATTTTACCCTTAATTTAT
1 AGAATTACCATTTTACCCTCAATTTAC
*** *
86304253 AGAATTAATGTTTTACCCTCGATTTAC
1 AGAATTACCATTTTACCCTCAATTTAC
*
86304280 AAAATTACCATTTTACCCTCAATTTAC
1 AGAATTACCATTTTACCCTCAATTTAC
* *
86304307 AAAATTACCATTTTACCCTCGATTTAC
1 AGAATTACCATTTTACCCTCAATTTAC
*
86304334 AAAATTAC
1 AGAATTAC
86304342 TAAAATACAT
Statistics
Matches: 121, Mismatches: 22, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 121 1.00
ACGTcount: A:0.33, C:0.21, G:0.05, T:0.41
Consensus pattern (27 bp):
AGAATTACCATTTTACCCTCAATTTAC
Found at i:86304228 original size:54 final size:54
Alignment explanation
Indices: 86304174--86304341 Score: 221
Period size: 54 Copynumber: 3.1 Consensus size: 54
86304164 TGTAAGATAG
* * * * *
86304174 AATTACCATTTTACCCTTGATTTACAGAATTTTCGTTTTACCCTCAATTTATAG
1 AATTACCATTTTACCCTTAATTTACAGAATTATCGTTTTACCCTCGATTTACAA
* *
86304228 AATTACTATTTTACCCTTAATTTATAGAATTAAT-GTTTTACCCTCGATTTACAA
1 AATTACCATTTTACCCTTAATTTACAGAATT-ATCGTTTTACCCTCGATTTACAA
* * * *
86304282 AATTACCATTTTACCCTCAATTTACAAAATTACCATTTTACCCTCGATTTACAA
1 AATTACCATTTTACCCTTAATTTACAGAATTATCGTTTTACCCTCGATTTACAA
86304336 AATTAC
1 AATTAC
86304342 TAAAATACAT
Statistics
Matches: 99, Mismatches: 13, Indels: 4
0.85 0.11 0.03
Matches are distributed among these distances:
53 1 0.01
54 97 0.98
55 1 0.01
ACGTcount: A:0.33, C:0.21, G:0.05, T:0.42
Consensus pattern (54 bp):
AATTACCATTTTACCCTTAATTTACAGAATTATCGTTTTACCCTCGATTTACAA
Found at i:86304259 original size:81 final size:81
Alignment explanation
Indices: 86304170--86304325 Score: 213
Period size: 81 Copynumber: 1.9 Consensus size: 81
86304160 CTCCTGTAAG
* * * ** * * * *
86304170 ATAGAATTACCATTTTACCCTTGATTTACAGAATTTTCGTTTTACCCTCAATTTATAGAATTACT
1 ATAGAATTAACATTTTACCCTCGATTTACAAAATTACCATTTTACCCTCAATTTACAAAATTACC
86304235 ATTTTACCCTTAATTT
66 ATTTTACCCTTAATTT
**
86304251 ATAGAATTAATGTTTTACCCTCGATTTACAAAATTACCATTTTACCCTCAATTTACAAAATTACC
1 ATAGAATTAACATTTTACCCTCGATTTACAAAATTACCATTTTACCCTCAATTTACAAAATTACC
86304316 ATTTTACCCT
66 ATTTTACCCT
86304326 CGATTTACAA
Statistics
Matches: 64, Mismatches: 11, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
81 64 1.00
ACGTcount: A:0.32, C:0.21, G:0.05, T:0.42
Consensus pattern (81 bp):
ATAGAATTAACATTTTACCCTCGATTTACAAAATTACCATTTTACCCTCAATTTACAAAATTACC
ATTTTACCCTTAATTT
Found at i:86304447 original size:27 final size:27
Alignment explanation
Indices: 86304417--86304627 Score: 278
Period size: 27 Copynumber: 7.8 Consensus size: 27
86304407 TAATTTGTGA
*
86304417 AATTACCGAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
86304444 AATTATCGAAATACGCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * *
86304471 AATTATCGGAATACCCCTGTAGGATAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
86304498 AATTACCGGAATACCCCTGTAGGGTAA
1 AATTACCGAAATACCCCTGTAGGGTAG
** * *
86304525 AATTGTCGCAATACCCATGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
86304552 AATTACTGAAATACCCCTGTAGGGTAA
1 AATTACCGAAATACCCCTGTAGGGTAG
86304579 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
86304606 AATTATCGCAATACCCCTGTAG
1 AATTACCGAAATACCCCTGTAG
86304628 ACCAAAATAC
Statistics
Matches: 160, Mismatches: 24, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 160 1.00
ACGTcount: A:0.33, C:0.20, G:0.22, T:0.25
Consensus pattern (27 bp):
AATTACCGAAATACCCCTGTAGGGTAG
Found at i:86308676 original size:50 final size:48
Alignment explanation
Indices: 86308601--86308826 Score: 211
Period size: 50 Copynumber: 4.5 Consensus size: 48
86308591 TGAGTACACG
* *
86308601 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCATACTATTAAGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGA-T-TTAAGTCACA
* * * * *
86308651 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACTCAATGACTT-CGATCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTAC-C-A-GATTTAAG-TCACA
* * * * * *
86308702 TGTGTAGTACTAAGTGCAAGCTACTATGTGTATCAGATGGTGAGGTCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGAT--TTAAGTCACA
* * **
86308752 TGTGTAGTACTAAGTGCAGGCTACTACGTGTTCCGGATTGTCGGTCACA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATT-TAAGTCACA
86308801 TGTGTAGTACTAAGTGCAGGCTACTA
1 TGTGTAGTACTAAGTGCAGGCTACTA
86308827 TGCGTATCGG
Statistics
Matches: 147, Mismatches: 21, Indels: 17
0.79 0.11 0.09
Matches are distributed among these distances:
48 3 0.02
49 33 0.22
50 72 0.49
51 37 0.25
52 1 0.01
53 1 0.01
ACGTcount: A:0.25, C:0.19, G:0.26, T:0.30
Consensus pattern (48 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTTAAGTCACA
Found at i:86308772 original size:101 final size:99
Alignment explanation
Indices: 86308597--86308834 Score: 273
Period size: 101 Copynumber: 2.4 Consensus size: 99
86308587 ATTGTGAGTA
* * * * *
86308597 CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCATACTATTAAGTCGCATGTGTAGTACT
1 CACGTGTGTAGTACTAAGTGCAGGCTACTATGTGTATCAGACTATGAAGTCACATGTGTAGTACT
*
86308662 AAGTGCAGGCTACTATGCGTACTCAATGACT-TCGAT
66 AAGTGCAGGCTACTA--CGTACTC-AGGACTGTCGAT
* * * *
86308698 CACGTGTGTAGTACTAAGTGCAAGCTACTATGTGTATCAGA-TGGTGAGGTCACGTGTGTAGTAC
1 CACGTGTGTAGTACTAAGTGCAGGCTACTATGTGTATCAGACT-ATGAAGTCACATGTGTAGTAC
** * * *
86308762 TAAGTGCAGGCTACTACGTGTTCCGGATTGTCGGT
65 TAAGTGCAGGCTACTACGTACTCAGGACTGTCGAT
* *
86308797 CACATGTGTAGTACTAAGTGCAGGCTACTATGCGTATC
1 CACGTGTGTAGTACTAAGTGCAGGCTACTATGTGTATC
86308835 GGGTAGCTTC
Statistics
Matches: 117, Mismatches: 18, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
98 3 0.03
99 44 0.38
100 1 0.01
101 69 0.59
ACGTcount: A:0.25, C:0.19, G:0.26, T:0.30
Consensus pattern (99 bp):
CACGTGTGTAGTACTAAGTGCAGGCTACTATGTGTATCAGACTATGAAGTCACATGTGTAGTACT
AAGTGCAGGCTACTACGTACTCAGGACTGTCGAT
Found at i:86312596 original size:93 final size:93
Alignment explanation
Indices: 86312432--86312603 Score: 299
Period size: 93 Copynumber: 1.8 Consensus size: 93
86312422 CGCCCATAAG
* * *
86312432 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAGGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
*
86312497 ATGAGTTCGGATGCCTAGTTACATTTCA
66 ACGAGTTCGGATGCCTAGTTACATTTCA
*
86312525 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
86312590 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
86312604 TCAACCATCC
Statistics
Matches: 74, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.22
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATTTCA
Found at i:86312600 original size:46 final size:46
Alignment explanation
Indices: 86312425--86312600 Score: 189
Period size: 46 Copynumber: 3.8 Consensus size: 46
86312415 TGTAACCCGC
* * *
86312425 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* * * *
86312471 CCATAGGTGAACTCGGACTCAACTCAATGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
* *
86312521 --TTCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
86312564 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
86312601 TGCTCAACCA
Statistics
Matches: 105, Mismatches: 16, Indels: 18
0.76 0.12 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 1 0.01
45 2 0.02
46 61 0.58
47 28 0.27
48 1 0.01
49 1 0.01
50 3 0.03
51 2 0.02
ACGTcount: A:0.28, C:0.28, G:0.22, T:0.22
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:86312619 original size:46 final size:45
Alignment explanation
Indices: 86312433--86312619 Score: 125
Period size: 46 Copynumber: 4.0 Consensus size: 45
86312423 GCCCATAAGC
* ** * *
86312433 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTC--GCATCCATAGGT
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCAT-C-TA-GT
* * *
86312479 GAACTCGGACTCAACTCAATGAGTTCGGATGC-CTAGTTA-CATTTCA-C
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCTC-A---ACCATCT-AGT
* * * *
86312526 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCAT-AAGT
1 GAACTCGGACTCAACTCAACGAGTTCGG--ATGCTCAACCATCTAGT
86312572 GAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCCTAGT
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCAT-CTAGT
86312618 GA
1 GA
86312620 CATGTCACTT
Statistics
Matches: 111, Mismatches: 16, Indels: 28
0.72 0.10 0.18
Matches are distributed among these distances:
44 9 0.08
45 2 0.02
46 60 0.54
47 30 0.27
48 1 0.01
49 5 0.05
50 4 0.04
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.22
Consensus pattern (45 bp):
GAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCTAGT
Found at i:86314563 original size:30 final size:30
Alignment explanation
Indices: 86314519--86314607 Score: 101
Period size: 30 Copynumber: 3.0 Consensus size: 30
86314509 CAAAGATAAC
86314519 AAGAAAACC-GAATAAAGAAATCCAAGATA
1 AAGAAAACCAGAATAAAGAAATCCAAGATA
* *
86314548 GAGAAACCCAGAATAAAGAAATCC-AGAATA
1 AAGAAAACCAGAATAAAGAAATCCAAG-ATA
* * * *
86314578 AAGAGATCCAGGATAAAGAAACCCAAGATA
1 AAGAAAACCAGAATAAAGAAATCCAAGATA
86314608 CGATACTATG
Statistics
Matches: 50, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
29 9 0.18
30 39 0.78
31 2 0.04
ACGTcount: A:0.57, C:0.16, G:0.17, T:0.10
Consensus pattern (30 bp):
AAGAAAACCAGAATAAAGAAATCCAAGATA
Found at i:86314567 original size:15 final size:15
Alignment explanation
Indices: 86314519--86314598 Score: 92
Period size: 15 Copynumber: 5.4 Consensus size: 15
86314509 CAAAGATAAC
*
86314519 AAGAAAACC-GAATA
1 AAGAAATCCAGAATA
86314533 AAGAAATCCA-AGATA
1 AAGAAATCCAGA-ATA
* *
86314548 GAGAAACCCAGAATA
1 AAGAAATCCAGAATA
86314563 AAGAAATCCAGAATA
1 AAGAAATCCAGAATA
* *
86314578 AAGAGATCCAGGATA
1 AAGAAATCCAGAATA
86314593 AAGAAA
1 AAGAAA
86314599 CCCAAGATAC
Statistics
Matches: 55, Mismatches: 8, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
14 9 0.16
15 45 0.82
16 1 0.02
ACGTcount: A:0.59, C:0.14, G:0.17, T:0.10
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:86314607 original size:15 final size:15
Alignment explanation
Indices: 86314530--86314607 Score: 79
Period size: 15 Copynumber: 5.2 Consensus size: 15
86314520 AGAAAACCGA
86314530 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
* *
86314545 ATAGAGAAA-CCCAG
1 ATAAAGAAATCCAAG
86314559 AATAAAGAAATCC-AG
1 -ATAAAGAAATCCAAG
* *
86314574 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
86314590 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
86314605 ATA
1 ATA
86314608 CGATACTATG
Statistics
Matches: 52, Mismatches: 8, Indels: 6
0.79 0.12 0.09
Matches are distributed among these distances:
14 4 0.08
15 45 0.87
16 3 0.06
ACGTcount: A:0.56, C:0.15, G:0.17, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:86317465 original size:27 final size:27
Alignment explanation
Indices: 86317435--86317611 Score: 189
Period size: 27 Copynumber: 6.6 Consensus size: 27
86317425 ATATTGAGTC
* * *
86317435 CGCACACTCAATGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
*
86317462 CGCACACTTAGTGCTACGTAATCAA-T
1 CGCACACTTAGTGCTACATAATCAACT
86317488 CGCACACTTAGTGCTACATAATCAATCT
1 CGCACACTTAGTGCTACATAATCAA-CT
* ** *
86317516 CGCACACTTAGTGCCACATGGTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
* **
86317543 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAATCAACT
* *
86317570 CGCACACTTAGTGC-ATCATAGTCAAAT
1 CGCACACTTAGTGCTA-CATAATCAACT
86317597 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
86317612 GTACAATTTA
Statistics
Matches: 131, Mismatches: 15, Indels: 7
0.86 0.10 0.05
Matches are distributed among these distances:
26 26 0.20
27 82 0.63
28 23 0.18
ACGTcount: A:0.30, C:0.28, G:0.14, T:0.28
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:86317541 original size:54 final size:54
Alignment explanation
Indices: 86317435--86317611 Score: 209
Period size: 54 Copynumber: 3.3 Consensus size: 54
86317425 ATATTGAGTC
* * * * * *
86317435 CGCACACTCAATGCTATATAATCAA-CTCGCACACTTAGTGCTACGTAATCAAT
1 CGCACACTTAGTGCTACATAATCAATCTCGCACACTTAGTGCCACATAGTCAAT
*
86317488 CGCACACTTAGTGCTACATAATCAATCTCGCACACTTAGTGCCACATGGTCAATT
1 CGCACACTTAGTGCTACATAATCAATCTCGCACACTTAGTGCCACATAGTCAA-T
* *
86317543 CGCACACTTAGTGC-ATCATATTC-ATTTCGCACACTTAGTG-CATCATAGTCAAAT
1 CGCACACTTAGTGCTA-CATAATCAATCTCGCACACTTAGTGCCA-CATAGTC-AAT
86317597 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
86317612 GTACAATTTA
Statistics
Matches: 108, Mismatches: 10, Indels: 10
0.84 0.08 0.08
Matches are distributed among these distances:
53 24 0.22
54 61 0.56
55 23 0.21
ACGTcount: A:0.30, C:0.28, G:0.14, T:0.28
Consensus pattern (54 bp):
CGCACACTTAGTGCTACATAATCAATCTCGCACACTTAGTGCCACATAGTCAAT
Found at i:86317552 original size:81 final size:81
Alignment explanation
Indices: 86317456--86317610 Score: 208
Period size: 81 Copynumber: 1.9 Consensus size: 81
86317446 TGCTATATAA
* *
86317456 TCAACTCGCACACTTAGTGC-TACGTAATCA-ATCGCACACTTAGTGC-TACATAATCAATCTCG
1 TCAACTCGCACACTTAGTGCAT-CATAATCATATCGCACACTTAGTGCAT-CATAATCAA-ATCG
86317518 CACACTTAGTGCCACATGG
63 CACACTTAGTGCCACATGG
* * * *
86317537 TCAATTCGCACACTTAGTGCATCATATTCATTTCGCACACTTAGTGCATCATAGTCAAATCGCAC
1 TCAACTCGCACACTTAGTGCATCATAATCATATCGCACACTTAGTGCATCATAATCAAATCGCAC
86317602 ACTTAGTGC
66 ACTTAGTGC
86317611 TGTACAATTT
Statistics
Matches: 65, Mismatches: 6, Indels: 6
0.84 0.08 0.08
Matches are distributed among these distances:
81 40 0.62
82 24 0.37
83 1 0.02
ACGTcount: A:0.29, C:0.28, G:0.14, T:0.28
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCATCATAATCATATCGCACACTTAGTGCATCATAATCAAATCGCAC
ACTTAGTGCCACATGG
Found at i:86330026 original size:40 final size:40
Alignment explanation
Indices: 86329971--86330175 Score: 285
Period size: 40 Copynumber: 5.2 Consensus size: 40
86329961 CGGATGATAA
*
86329971 CGAAGGCATTTGTGCTAGTGACTA-ATTCCGGGCTAAGTCC
1 CGAAGGCATTTGTGCGAGTGACTATA-TCCGGGCTAAGTCC
*
86330011 CGAAGGCATTTGTGCTAGTGACTA-ATCCTGGGCTAAGTCC
1 CGAAGGCATTTGTGCGAGTGACTATATCC-GGGCTAAGTCC
*
86330051 CGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCC
1 CGAAGGCATTTGTGCGAGTGACTATATCCGGGCTAAGTCC
86330091 CGAAGGCATTTGTGCGAGCT-ACTATATCCGGGCTAAGTCC
1 CGAAGGCATTTGTGCGAG-TGACTATATCCGGGCTAAGTCC
* * *
86330131 CGAAGGCATTTGAGCGAGT-AGCTATATCC-GGTTAAATCC
1 CGAAGGCATTTGTGCGAGTGA-CTATATCCGGGCTAAGTCC
86330170 CGAAGG
1 CGAAGG
86330176 TACTTGGTTT
Statistics
Matches: 156, Mismatches: 5, Indels: 9
0.92 0.03 0.05
Matches are distributed among these distances:
39 19 0.12
40 132 0.85
41 5 0.03
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
CGAAGGCATTTGTGCGAGTGACTATATCCGGGCTAAGTCC
Found at i:86347585 original size:30 final size:30
Alignment explanation
Indices: 86347549--86347609 Score: 95
Period size: 30 Copynumber: 2.0 Consensus size: 30
86347539 CATTTAATAC
*
86347549 AAACTTTGGCAAAATTACATTTTTGCCCCT
1 AAACTTTGGCAAAATTACACTTTTGCCCCT
* *
86347579 AAACTTTTGCATAATTACACTTTTGCCCCT
1 AAACTTTGGCAAAATTACACTTTTGCCCCT
86347609 A
1 A
86347610 GGCTCAGGAA
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.30, C:0.25, G:0.08, T:0.38
Consensus pattern (30 bp):
AAACTTTGGCAAAATTACACTTTTGCCCCT
Found at i:86357920 original size:21 final size:20
Alignment explanation
Indices: 86357881--86357918 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
86357871 TTATTTGTGA
86357881 TTTTTTTGTTTACATTTTAT
1 TTTTTTTGTTTACATTTTAT
86357901 TTTTTTCTGTTTA-ATTTT
1 TTTTTT-TGTTTACATTTT
86357919 TAGCTTAATT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
20 11 0.65
21 6 0.35
ACGTcount: A:0.13, C:0.05, G:0.05, T:0.76
Consensus pattern (20 bp):
TTTTTTTGTTTACATTTTAT
Found at i:86377055 original size:48 final size:48
Alignment explanation
Indices: 86376996--86377102 Score: 144
Period size: 48 Copynumber: 2.2 Consensus size: 48
86376986 TTTATCACTA
* *
86376996 GGACATGGCATTGTCATCGATATGTGA-TCCAATGTAAGACCATATCTG
1 GGACATGGCATTGCCATCGATATGTGATTCC-ATGAAAGACCATATCTG
* * * *
86377044 GGATATGGCATTGCCATCGATATGTGATTTCGTGAAAGACCATGTCTG
1 GGACATGGCATTGCCATCGATATGTGATTCCATGAAAGACCATATCTG
86377092 GGACATGGCAT
1 GGACATGGCAT
86377103 CGATATGAGA
Statistics
Matches: 51, Mismatches: 7, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
48 49 0.96
49 2 0.04
ACGTcount: A:0.27, C:0.18, G:0.26, T:0.29
Consensus pattern (48 bp):
GGACATGGCATTGCCATCGATATGTGATTCCATGAAAGACCATATCTG
Found at i:86378069 original size:27 final size:26
Alignment explanation
Indices: 86378021--86378072 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
86378011 GCGAGGCTGC
*
86378021 CAGATATTGTGACGAAGTCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
* *
86378047 CAGATATATGTGGCGAGGCCACCAGA
1 CAGATAT-TGTGACGAAGCCACCAGA
86378073 TTGCAGCGAG
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.35, C:0.21, G:0.27, T:0.17
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:86378753 original size:27 final size:27
Alignment explanation
Indices: 86378723--86378841 Score: 157
Period size: 27 Copynumber: 4.4 Consensus size: 27
86378713 GGGGCAAAAT
* * *
86378723 GGTAATTTTACCCCACAAGGGTATCTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
86378750 GGTAATTCTACCCTACAGGGGTATTTT
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
86378777 GGTATTTCTACCCTACAAGGGTATTTT
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
86378804 GGTAATTCTATCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
86378831 GGTAATTCTAC
1 GGTAATTCTAC
86378842 AACTTATCCA
Statistics
Matches: 80, Mismatches: 12, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 80 1.00
ACGTcount: A:0.24, C:0.20, G:0.20, T:0.36
Consensus pattern (27 bp):
GGTAATTCTACCCTACAAGGGTATTTC
Found at i:86383721 original size:27 final size:27
Alignment explanation
Indices: 86383688--86383886 Score: 272
Period size: 27 Copynumber: 7.4 Consensus size: 27
86383678 GGATAAGTTA
*
86383688 TAGAATTACCGAAATACCCCTGTAAGG
1 TAGAATTACCGAAATACCCCTGTAGGG
**
86383715 TAGAATTACCGAAATACCCCTGTAAAG
1 TAGAATTACCGAAATACCCCTGTAGGG
**
86383742 TAGAATTATTGAAATACCCCTGTAGGG
1 TAGAATTACCGAAATACCCCTGTAGGG
* * *
86383769 TAGAATTACCGAAATACACTTGTAGGA
1 TAGAATTACCGAAATACCCCTGTAGGG
*
86383796 TAGAATTACCGAAATACCCTTGTAGGG
1 TAGAATTACCGAAATACCCCTGTAGGG
*
86383823 TAGAAATACCGAAATACCCCTGTAGGG
1 TAGAATTACCGAAATACCCCTGTAGGG
* * *
86383850 TAGAATTACCGAGATACCCTTGTGGGG
1 TAGAATTACCGAAATACCCCTGTAGGG
*
86383877 TAAAATTACC
1 TAGAATTACC
86383887 ATTTTTCCCC
Statistics
Matches: 153, Mismatches: 19, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 153 1.00
ACGTcount: A:0.36, C:0.19, G:0.20, T:0.25
Consensus pattern (27 bp):
TAGAATTACCGAAATACCCCTGTAGGG
Found at i:86385629 original size:40 final size:40
Alignment explanation
Indices: 86385554--86385676 Score: 124
Period size: 40 Copynumber: 3.1 Consensus size: 40
86385544 CCAAGTATCT
* *
86385554 TCGGGATTTAG-CCGGATATAACAACTCGCACAAATGCCC
1 TCGGGACTTAGCCCGGATATAACAACTAGCACAAATGCCC
* * *
86385593 TCGGGTCTTAGCCCGGATATAATC-ACTAGCATAAATGCCT
1 TCGGGACTTAGCCCGGATATAA-CAACTAGCACAAATGCCC
* * * * * *
86385633 TTGGGACATAGCCCGGATATAGCAACTCGTACAAATGCCT
1 TCGGGACTTAGCCCGGATATAACAACTAGCACAAATGCCC
86385673 TCGG
1 TCGG
86385677 ATCTTAGTCC
Statistics
Matches: 68, Mismatches: 13, Indels: 5
0.79 0.15 0.06
Matches are distributed among these distances:
39 10 0.15
40 57 0.84
41 1 0.01
ACGTcount: A:0.28, C:0.26, G:0.22, T:0.24
Consensus pattern (40 bp):
TCGGGACTTAGCCCGGATATAACAACTAGCACAAATGCCC
Found at i:86387374 original size:16 final size:18
Alignment explanation
Indices: 86387355--86387396 Score: 61
Period size: 16 Copynumber: 2.4 Consensus size: 18
86387345 TTTCATTACT
*
86387355 TTTCTTTTTTTTA-TT-C
1 TTTCTTTTATTTATTTCC
86387371 TTTCTTTTATTTATTTCC
1 TTTCTTTTATTTATTTCC
86387389 TTTCTTTT
1 TTTCTTTT
86387397 GCATAAAATA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
16 12 0.52
17 2 0.09
18 9 0.39
ACGTcount: A:0.07, C:0.14, G:0.00, T:0.79
Consensus pattern (18 bp):
TTTCTTTTATTTATTTCC
Found at i:86388137 original size:26 final size:27
Alignment explanation
Indices: 86388108--86388167 Score: 86
Period size: 27 Copynumber: 2.3 Consensus size: 27
86388098 CCACATATAT
86388108 ATATCTGT-TCTGGTGACCTAGCCACA
1 ATATCTGTATCTGGTGACCTAGCCACA
* * *
86388134 ATATCTGTATCTGGTGACTTGGTCACA
1 ATATCTGTATCTGGTGACCTAGCCACA
86388161 ATATCTG
1 ATATCTG
86388168 GCAACCTCGC
Statistics
Matches: 30, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
26 8 0.27
27 22 0.73
ACGTcount: A:0.23, C:0.22, G:0.20, T:0.35
Consensus pattern (27 bp):
ATATCTGTATCTGGTGACCTAGCCACA
Found at i:86392945 original size:46 final size:46
Alignment explanation
Indices: 86392895--86393064 Score: 186
Period size: 46 Copynumber: 3.7 Consensus size: 46
86392885 TTGAGCATCT
86392895 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCC
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCC
* * * *
86392941 GAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--AATG-TAACTAGGCATCC
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G--TCC
* * *
86392988 GAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCC
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCC
* *
86393034 GAGCTCGTTGAGTTGAGTCTGAGTTCACTTA
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTA
86393065 GGGGCGGGTT
Statistics
Matches: 101, Mismatches: 14, Indels: 18
0.76 0.11 0.14
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
45 3 0.03
46 56 0.55
47 28 0.28
48 3 0.03
50 3 0.03
51 2 0.02
ACGTcount: A:0.23, C:0.20, G:0.28, T:0.29
Consensus pattern (46 bp):
GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCC
Found at i:86393048 original size:93 final size:93
Alignment explanation
Indices: 86392889--86393059 Score: 288
Period size: 93 Copynumber: 1.8 Consensus size: 93
86392879 GGATGGTTGA
* * * *
86392889 GCATCTGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
86392954 TGAGTCCGAGTTCGTGAAATGTAACTAG
66 TGAGTCCGAGTTCGTGAAATGTAACTAG
*
86392982 GCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
*
86393047 TGAGTCTGAGTTC
66 TGAGTCCGAGTTC
86393060 ACTTAGGGGC
Statistics
Matches: 72, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.22, C:0.20, G:0.28, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAAATGTAACTAG
Found at i:86401688 original size:40 final size:39
Alignment explanation
Indices: 86401604--86401788 Score: 187
Period size: 40 Copynumber: 4.6 Consensus size: 39
86401594 TCGAATGATG
* *
86401604 TCCGGGCTAAGTTCCGAAGGC-TTTGTGCTAAGTGACT-AT
1 TCCGGGCTAAG-TCCGAAGGCATTTGTGC-GAGTTACTAAT
* * *
86401643 ATCCGGACTAGGATCCGAAGGCATTTGTGCGAGTAACTAAT
1 -TCCGGGCTAAG-TCCGAAGGCATTTGTGCGAGTTACTAAT
* * *
86401684 TCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAAT
*
86401723 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AT
1 TCCGGGCTAAGT-CCGAAGGCATTTGTGCGAGTTACTAAT
* *
86401762 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGT-CCGAAGGCATTTG
86401789 AATGAGTAGC
Statistics
Matches: 123, Mismatches: 18, Indels: 8
0.83 0.12 0.05
Matches are distributed among these distances:
39 35 0.28
40 79 0.64
41 9 0.07
ACGTcount: A:0.24, C:0.22, G:0.29, T:0.26
Consensus pattern (39 bp):
TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAAT
Found at i:86401810 original size:79 final size:79
Alignment explanation
Indices: 86401657--86401811 Score: 190
Period size: 79 Copynumber: 2.0 Consensus size: 79
86401647 GGACTAGGAT
* **
86401657 CCGAAGGCATTTGTGCGAGTAACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGTAACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
86401722 ATCCGGGTTAAGTC
66 ATCCGGGTTAAGTC
* * * *
86401736 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAATGAG-TAGC
1 CCGAAGGCATTTGTGCGAGTAACTAAT-ACCGGGCTAAG-CCCGAAGGCATTGGAACGAGTTA-C
*
86401799 TATATCC-GGTTAA
63 TAAATCCGGGTTAA
86401812 ATTCTGAAGG
Statistics
Matches: 65, Mismatches: 8, Indels: 6
0.82 0.10 0.08
Matches are distributed among these distances:
78 2 0.03
79 40 0.62
80 23 0.35
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.26
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGTAACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
ATCCGGGTTAAGTC
Found at i:86405012 original size:30 final size:31
Alignment explanation
Indices: 86404978--86405045 Score: 75
Period size: 30 Copynumber: 2.2 Consensus size: 31
86404968 AATTTAAAAT
* *
86404978 AAAATCCCCACAAGAAAAATAC-GTAATTTA
1 AAAATCCCCAAAAGAAAAATACTATAATTTA
* * *
86405008 AAAATACCCAAAATAAAATTACTTATAATTTA
1 AAAATCCCCAAAAGAAAAATAC-TATAATTTA
86405040 AAAATC
1 AAAATC
86405046 AAATATGAAA
Statistics
Matches: 30, Mismatches: 6, Indels: 2
0.79 0.16 0.05
Matches are distributed among these distances:
30 18 0.60
32 12 0.40
ACGTcount: A:0.56, C:0.16, G:0.03, T:0.25
Consensus pattern (31 bp):
AAAATCCCCAAAAGAAAAATACTATAATTTA
Found at i:86406393 original size:33 final size:33
Alignment explanation
Indices: 86406353--86406424 Score: 144
Period size: 33 Copynumber: 2.2 Consensus size: 33
86406343 GTAATGACTG
86406353 TTTTTTTATTATCTAGCCTAAGAATAAGGGGTT
1 TTTTTTTATTATCTAGCCTAAGAATAAGGGGTT
86406386 TTTTTTTATTATCTAGCCTAAGAATAAGGGGTT
1 TTTTTTTATTATCTAGCCTAAGAATAAGGGGTT
86406419 TTTTTT
1 TTTTTT
86406425 AACTAACTAA
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 39 1.00
ACGTcount: A:0.25, C:0.08, G:0.17, T:0.50
Consensus pattern (33 bp):
TTTTTTTATTATCTAGCCTAAGAATAAGGGGTT
Found at i:86410266 original size:38 final size:38
Alignment explanation
Indices: 86410214--86410443 Score: 137
Period size: 38 Copynumber: 5.6 Consensus size: 38
86410204 ATTGATTCAT
* *
86410214 TAACGTGGTTCTAAGTGGATATAACCCAGCTAAACATG
1 TAACGTGGTGCTAAGTGGATATAACCCGGCTAAACATG
*
86410252 TAACGTGGTGCTAAGTGGATAT-GCCACGGTTACATATATTGATTCAT-
1 TAACGTGGTGCTAAGTGGATATAACC-CGG---C-TA-A---A--CATG
* * *
86410299 TAACATGGTTCTAAGTGGATATAACCCGGTTAAACATG
1 TAACGTGGTGCTAAGTGGATATAACCCGGCTAAACATG
*
86410337 TAACGTGGTGCTAAGTGGATAT-GCCACGGTTACATATATTGATTCAT-
1 TAACGTGGTGCTAAGTGGATATAACC-CGG---C-TA-A---A--CATG
* *
86410384 TAACATGGTGCTAAGTGGATAT-ACCACGGTTAAACATG
1 TAACGTGGTGCTAAGTGGATATAACC-CGGCTAAACATG
86410422 TAACGTGGTGCTAAGTGGATAT
1 TAACGTGGTGCTAAGTGGATAT
86410444 GCCACGGTTA
Statistics
Matches: 152, Mismatches: 15, Indels: 50
0.70 0.07 0.23
Matches are distributed among these distances:
37 10 0.07
38 67 0.44
39 2 0.01
41 1 0.01
42 6 0.04
43 6 0.04
46 2 0.01
47 50 0.33
48 8 0.05
ACGTcount: A:0.31, C:0.15, G:0.23, T:0.30
Consensus pattern (38 bp):
TAACGTGGTGCTAAGTGGATATAACCCGGCTAAACATG
Found at i:86410266 original size:85 final size:85
Alignment explanation
Indices: 86410162--86410453 Score: 532
Period size: 85 Copynumber: 3.4 Consensus size: 85
86410152 ACATATTGAT
*
86410162 ACATGTAACGTGGTGCTAAGTGGATATGCCACGGTTACATATATTGATTCATTAACGTGGTTCTA
1 ACATGTAACGTGGTGCTAAGTGGATATGCCACGGTTACATATATTGATTCATTAACATGGTTCTA
* *
86410227 AGTGGATATAACCCAGCTAA
66 AGTGGATATAACCCGGTTAA
86410247 ACATGTAACGTGGTGCTAAGTGGATATGCCACGGTTACATATATTGATTCATTAACATGGTTCTA
1 ACATGTAACGTGGTGCTAAGTGGATATGCCACGGTTACATATATTGATTCATTAACATGGTTCTA
86410312 AGTGGATATAACCCGGTTAA
66 AGTGGATATAACCCGGTTAA
*
86410332 ACATGTAACGTGGTGCTAAGTGGATATGCCACGGTTACATATATTGATTCATTAACATGGTGCTA
1 ACATGTAACGTGGTGCTAAGTGGATATGCCACGGTTACATATATTGATTCATTAACATGGTTCTA
86410397 AGTGGATAT-ACCACGGTTAA
66 AGTGGATATAACC-CGGTTAA
86410417 ACATGTAACGTGGTGCTAAGTGGATATGCCACGGTTA
1 ACATGTAACGTGGTGCTAAGTGGATATGCCACGGTTA
86410454 TACATGTTAA
Statistics
Matches: 202, Mismatches: 4, Indels: 2
0.97 0.02 0.01
Matches are distributed among these distances:
84 3 0.01
85 199 0.99
ACGTcount: A:0.30, C:0.16, G:0.24, T:0.30
Consensus pattern (85 bp):
ACATGTAACGTGGTGCTAAGTGGATATGCCACGGTTACATATATTGATTCATTAACATGGTTCTA
AGTGGATATAACCCGGTTAA
Found at i:86410449 original size:38 final size:38
Alignment explanation
Indices: 86410384--86410460 Score: 127
Period size: 38 Copynumber: 2.0 Consensus size: 38
86410374 ATTGATTCAT
86410384 TAACATGGTGCTAAGTGGATATACCACGGTTAAACATG
1 TAACATGGTGCTAAGTGGATATACCACGGTTAAACATG
* * *
86410422 TAACGTGGTGCTAAGTGGATATGCCACGGTTATACATG
1 TAACATGGTGCTAAGTGGATATACCACGGTTAAACATG
86410460 T
1 T
86410461 TAATTTGAAA
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
38 36 1.00
ACGTcount: A:0.30, C:0.16, G:0.26, T:0.29
Consensus pattern (38 bp):
TAACATGGTGCTAAGTGGATATACCACGGTTAAACATG
Found at i:86418008 original size:55 final size:53
Alignment explanation
Indices: 86417868--86418019 Score: 187
Period size: 55 Copynumber: 2.8 Consensus size: 53
86417858 TAAATTGTAC
* *
86417868 AGCACTAAGTGTGCGATTCGATTATGTTGCACTAAGTGTGCGAAAAGAATATG
1 AGCACTAAGTGTGCGATTTGATTATGTGGCACTAAGTGTGCGAAAAGAATATG
* ** * ***
86417921 ATGCACTAAGTGTGCGAATTGACCATGCGGCACTAAGTGTGCGAATCTAACTATG
1 A-GCACTAAGTGTGCGATTTGATTATGTGGCACTAAGTGTGCGAAAAGAA-TATG
*
86417976 TAGCACTAAGTGTGCGATTTGATTACGTGGCACTAAGTGTGCGA
1 -AGCACTAAGTGTGCGATTTGATTATGTGGCACTAAGTGTGCGA
86418020 GTTGAGTGAA
Statistics
Matches: 82, Mismatches: 14, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
53 1 0.01
54 39 0.48
55 41 0.50
56 1 0.01
ACGTcount: A:0.29, C:0.16, G:0.27, T:0.28
Consensus pattern (53 bp):
AGCACTAAGTGTGCGATTTGATTATGTGGCACTAAGTGTGCGAAAAGAATATG
Found at i:86418009 original size:82 final size:81
Alignment explanation
Indices: 86417869--86418024 Score: 197
Period size: 82 Copynumber: 1.9 Consensus size: 81
86417859 AAATTGTACA
* * * * *
86417869 GCACTAAGTGTGCGATTCGATTATGTTGCACTAAGTGTGCGAAAAGAATATGATGCACTAAGTGT
1 GCACTAAGTGTGCGAATCAACTATGTAGCACTAAGTGTGCGAAAAGAATACGATGCACTAAGTGT
86417934 GCGAATTGACCATGCG
66 GCGAATTGACCATGCG
*** *
86417950 GCACTAAGTGTGCGAATCTAACTATGTAGCACTAAGTGTGCGATTTGATTACG-TGGCACTAAGT
1 GCACTAAGTGTGCGAATC-AACTATGTAGCACTAAGTGTGCGAAAAGAATACGAT-GCACTAAGT
*
86418014 GTGCGAGTTGA
64 GTGCGAATTGA
86418025 GTGAATAGCA
Statistics
Matches: 63, Mismatches: 10, Indels: 3
0.83 0.13 0.04
Matches are distributed among these distances:
81 18 0.29
82 45 0.71
ACGTcount: A:0.28, C:0.16, G:0.28, T:0.28
Consensus pattern (81 bp):
GCACTAAGTGTGCGAATCAACTATGTAGCACTAAGTGTGCGAAAAGAATACGATGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:86418024 original size:27 final size:27
Alignment explanation
Indices: 86417869--86418024 Score: 154
Period size: 27 Copynumber: 5.7 Consensus size: 27
86417859 AAATTGTACA
* *
86417869 GCACTAAGTGTGCG-ATTCGATTATGTT
1 GCACTAAGTGTGCGAATT-GACTATGTG
** *
86417896 GCACTAAGTGTGCGAAAAGAATATGAT-
1 GCACTAAGTGTGCGAATTGACTATG-TG
* *
86417923 GCACTAAGTGTGCGAATTGACCATGCG
1 GCACTAAGTGTGCGAATTGACTATGTG
* *
86417950 GCACTAAGTGTGCGAATCTAACTATGTA
1 GCACTAAGTGTGCGAAT-TGACTATGTG
* * *
86417978 GCACTAAGTGTGCGATTTGATTACGTG
1 GCACTAAGTGTGCGAATTGACTATGTG
*
86418005 GCACTAAGTGTGCGAGTTGA
1 GCACTAAGTGTGCGAATTGA
86418025 GTGAATAGCA
Statistics
Matches: 107, Mismatches: 18, Indels: 8
0.80 0.14 0.06
Matches are distributed among these distances:
27 83 0.78
28 24 0.22
ACGTcount: A:0.28, C:0.16, G:0.28, T:0.28
Consensus pattern (27 bp):
GCACTAAGTGTGCGAATTGACTATGTG
Found at i:86418035 original size:27 final size:27
Alignment explanation
Indices: 86417976--86418045 Score: 79
Period size: 27 Copynumber: 2.6 Consensus size: 27
86417966 TCTAACTATG
* * *
86417976 TAGCACTAAGTGTGCGATTTGATTACG
1 TAGCACTAAGTGTGCGAGTTGATGACA
*
86418003 TGGCACTAAGTGTGCGAGTTGAGTGA-A
1 TAGCACTAAGTGTGCGAGTTGA-TGACA
*
86418030 TAGCACTGAGTGTGCG
1 TAGCACTAAGTGTGCG
86418046 GGTTCAATAT
Statistics
Matches: 36, Mismatches: 6, Indels: 2
0.82 0.14 0.05
Matches are distributed among these distances:
27 34 0.94
28 2 0.06
ACGTcount: A:0.24, C:0.14, G:0.33, T:0.29
Consensus pattern (27 bp):
TAGCACTAAGTGTGCGAGTTGATGACA
Found at i:86426055 original size:55 final size:53
Alignment explanation
Indices: 86425915--86426066 Score: 187
Period size: 55 Copynumber: 2.8 Consensus size: 53
86425905 TAAATTGTAC
* *
86425915 AGCACTAAGTGTGCGATTCGATTATGTTGCACTAAGTGTGCGAAAAGAATATG
1 AGCACTAAGTGTGCGATTTGATTATGTGGCACTAAGTGTGCGAAAAGAATATG
* ** * ***
86425968 ATGCACTAAGTGTGCGAATTGACCATGCGGCACTAAGTGTGCGAATCTAACTATG
1 A-GCACTAAGTGTGCGATTTGATTATGTGGCACTAAGTGTGCGAAAAGAA-TATG
*
86426023 TAGCACTAAGTGTGCGATTTGATTACGTGGCACTAAGTGTGCGA
1 -AGCACTAAGTGTGCGATTTGATTATGTGGCACTAAGTGTGCGA
86426067 GTTGAGTGAA
Statistics
Matches: 82, Mismatches: 14, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
53 1 0.01
54 39 0.48
55 41 0.50
56 1 0.01
ACGTcount: A:0.29, C:0.16, G:0.27, T:0.28
Consensus pattern (53 bp):
AGCACTAAGTGTGCGATTTGATTATGTGGCACTAAGTGTGCGAAAAGAATATG
Found at i:86426056 original size:82 final size:81
Alignment explanation
Indices: 86425916--86426071 Score: 197
Period size: 82 Copynumber: 1.9 Consensus size: 81
86425906 AAATTGTACA
* * * * *
86425916 GCACTAAGTGTGCGATTCGATTATGTTGCACTAAGTGTGCGAAAAGAATATGATGCACTAAGTGT
1 GCACTAAGTGTGCGAATCAACTATGTAGCACTAAGTGTGCGAAAAGAATACGATGCACTAAGTGT
86425981 GCGAATTGACCATGCG
66 GCGAATTGACCATGCG
*** *
86425997 GCACTAAGTGTGCGAATCTAACTATGTAGCACTAAGTGTGCGATTTGATTACG-TGGCACTAAGT
1 GCACTAAGTGTGCGAATC-AACTATGTAGCACTAAGTGTGCGAAAAGAATACGAT-GCACTAAGT
*
86426061 GTGCGAGTTGA
64 GTGCGAATTGA
86426072 GTGAATAGCA
Statistics
Matches: 63, Mismatches: 10, Indels: 3
0.83 0.13 0.04
Matches are distributed among these distances:
81 18 0.29
82 45 0.71
ACGTcount: A:0.28, C:0.16, G:0.28, T:0.28
Consensus pattern (81 bp):
GCACTAAGTGTGCGAATCAACTATGTAGCACTAAGTGTGCGAAAAGAATACGATGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:86426071 original size:27 final size:27
Alignment explanation
Indices: 86425916--86426071 Score: 154
Period size: 27 Copynumber: 5.7 Consensus size: 27
86425906 AAATTGTACA
* *
86425916 GCACTAAGTGTGCG-ATTCGATTATGTT
1 GCACTAAGTGTGCGAATT-GACTATGTG
** *
86425943 GCACTAAGTGTGCGAAAAGAATATGAT-
1 GCACTAAGTGTGCGAATTGACTATG-TG
* *
86425970 GCACTAAGTGTGCGAATTGACCATGCG
1 GCACTAAGTGTGCGAATTGACTATGTG
* *
86425997 GCACTAAGTGTGCGAATCTAACTATGTA
1 GCACTAAGTGTGCGAAT-TGACTATGTG
* * *
86426025 GCACTAAGTGTGCGATTTGATTACGTG
1 GCACTAAGTGTGCGAATTGACTATGTG
*
86426052 GCACTAAGTGTGCGAGTTGA
1 GCACTAAGTGTGCGAATTGA
86426072 GTGAATAGCA
Statistics
Matches: 107, Mismatches: 18, Indels: 8
0.80 0.14 0.06
Matches are distributed among these distances:
27 83 0.78
28 24 0.22
ACGTcount: A:0.28, C:0.16, G:0.28, T:0.28
Consensus pattern (27 bp):
GCACTAAGTGTGCGAATTGACTATGTG
Found at i:86426082 original size:27 final size:27
Alignment explanation
Indices: 86426023--86426092 Score: 79
Period size: 27 Copynumber: 2.6 Consensus size: 27
86426013 TCTAACTATG
* * *
86426023 TAGCACTAAGTGTGCGATTTGATTACG
1 TAGCACTAAGTGTGCGAGTTGATGACA
*
86426050 TGGCACTAAGTGTGCGAGTTGAGTGA-A
1 TAGCACTAAGTGTGCGAGTTGA-TGACA
*
86426077 TAGCACTGAGTGTGCG
1 TAGCACTAAGTGTGCG
86426093 GGTTCAATAT
Statistics
Matches: 36, Mismatches: 6, Indels: 2
0.82 0.14 0.05
Matches are distributed among these distances:
27 34 0.94
28 2 0.06
ACGTcount: A:0.24, C:0.14, G:0.33, T:0.29
Consensus pattern (27 bp):
TAGCACTAAGTGTGCGAGTTGATGACA
Found at i:86435483 original size:40 final size:40
Alignment explanation
Indices: 86435400--86435662 Score: 316
Period size: 40 Copynumber: 6.6 Consensus size: 40
86435390 TTGAATGCTG
* * * * * *
86435400 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTATTAAA
* * * * *
86435440 TCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAA
1 TCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTATTAAA
86435480 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
86435520 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* *
86435560 TCCGGGTTAAGTCCCGAAGGCAGTCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* * *
86435600 TCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* * *
86435639 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
86435663 TGAACGAGGA
Statistics
Matches: 199, Mismatches: 21, Indels: 7
0.88 0.09 0.03
Matches are distributed among these distances:
39 35 0.18
40 156 0.78
41 8 0.04
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.27
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
Found at i:86435682 original size:79 final size:80
Alignment explanation
Indices: 86435439--86435697 Score: 238
Period size: 80 Copynumber: 3.3 Consensus size: 80
86435429 AAGTGAATAT
* * * * * * *
86435439 ATCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCAT
1 ATCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCAG
** * *
86435503 TCGTGCGAGTTA-TTAA
65 TCGAACGAG-GAGCTAA
* * *
86435519 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCAGT
1 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCAGT
** ** *
86435584 CGTGCGAGTTGTTAA
66 CGAACGAGGAGCTAA
* * * *
86435599 ATCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATT
1 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCAGT
* *
86435663 TGAACGAGGAGCTAT
66 CGAACGAGGAGCTAA
*
86435678 ATCC-GGTTAAATCCCGAAGG
1 ATCCGGGTTAAGTCCCGAAGG
86435698 TACGTGATTT
Statistics
Matches: 154, Mismatches: 23, Indels: 6
0.84 0.13 0.03
Matches are distributed among these distances:
78 14 0.09
79 47 0.31
80 93 0.60
ACGTcount: A:0.26, C:0.20, G:0.28, T:0.25
Consensus pattern (80 bp):
ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCAGT
CGAACGAGGAGCTAA
Found at i:86443428 original size:40 final size:40
Alignment explanation
Indices: 86443345--86443607 Score: 316
Period size: 40 Copynumber: 6.6 Consensus size: 40
86443335 TTGAATGCTG
* * * * * *
86443345 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTATTAAA
* * * * *
86443385 TCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAA
1 TCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTATTAAA
86443425 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
86443465 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* *
86443505 TCCGGGTTAAGTCCCGAAGGCAGTCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* * *
86443545 TCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* * *
86443584 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
86443608 TGAACGAGGA
Statistics
Matches: 199, Mismatches: 21, Indels: 7
0.88 0.09 0.03
Matches are distributed among these distances:
39 35 0.18
40 156 0.78
41 8 0.04
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.27
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
Found at i:86443627 original size:79 final size:80
Alignment explanation
Indices: 86443384--86443642 Score: 238
Period size: 80 Copynumber: 3.3 Consensus size: 80
86443374 AAGTGAATAT
* * * * * * *
86443384 ATCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCAT
1 ATCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCAG
** * *
86443448 TCGTGCGAGTTA-TTAA
65 TCGAACGAG-GAGCTAA
* * *
86443464 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCAGT
1 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCAGT
** ** *
86443529 CGTGCGAGTTGTTAA
66 CGAACGAGGAGCTAA
* * * *
86443544 ATCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATT
1 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCAGT
* *
86443608 TGAACGAGGAGCTAT
66 CGAACGAGGAGCTAA
*
86443623 ATCC-GGTTAAATCCCGAAGG
1 ATCCGGGTTAAGTCCCGAAGG
86443643 TACGTGATTT
Statistics
Matches: 154, Mismatches: 23, Indels: 6
0.84 0.13 0.03
Matches are distributed among these distances:
78 14 0.09
79 47 0.31
80 93 0.60
ACGTcount: A:0.26, C:0.20, G:0.28, T:0.25
Consensus pattern (80 bp):
ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCAGT
CGAACGAGGAGCTAA
Found at i:86446921 original size:79 final size:80
Alignment explanation
Indices: 86446786--86446983 Score: 278
Period size: 79 Copynumber: 2.5 Consensus size: 80
86446776 CCTTCAGAAT
* **
86446786 TTAA-CCGGATATAGCT-ACTCGCTCAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCA
1 TTAACCCGGATTTAG-TAACTCGCTCAAATGCCTTCGGGACATAGCCCGAATATAGTAACTCGCA
86446849 AAAATGCCTTCGGGAC
65 AAAATGCCTTCGGGAC
* * *
86446865 TTAACCCGGATTTAGTAACTCGCACCAATGCCTTCGGG-CTTAGCCCGAA-ATTAGTAACTCGCA
1 TTAACCCGGATTTAGTAACTCGCTCAAATGCCTTCGGGACATAGCCCGAATA-TAGTAACTCGCA
*
86446928 CAAATGCCTTCGGGAC
65 AAAATGCCTTCGGGAC
*
86446944 TTAACCCGGATTTAGTAACTCGCTCAAATACCTTCGGGAC
1 TTAACCCGGATTTAGTAACTCGCTCAAATGCCTTCGGGAC
86446984 CTAACCCGGA
Statistics
Matches: 105, Mismatches: 10, Indels: 7
0.86 0.08 0.06
Matches are distributed among these distances:
78 1 0.01
79 75 0.71
80 29 0.28
ACGTcount: A:0.27, C:0.28, G:0.20, T:0.25
Consensus pattern (80 bp):
TTAACCCGGATTTAGTAACTCGCTCAAATGCCTTCGGGACATAGCCCGAATATAGTAACTCGCAA
AAATGCCTTCGGGAC
Found at i:86446993 original size:40 final size:40
Alignment explanation
Indices: 86446786--86446994 Score: 264
Period size: 40 Copynumber: 5.3 Consensus size: 40
86446776 CCTTCAGAAT
* *
86446786 TTAA-CCGGATATAGCT-ACTCGCTCAAATGCCTTCGGGAC
1 TTAACCCGGATTTAG-TAACTCGCACAAATGCCTTCGGGAC
* * *
86446825 ATAGCCCGG-TTATAGTAACTCGCAAAAATGCCTTCGGGAC
1 TTAACCCGGATT-TAGTAACTCGCACAAATGCCTTCGGGAC
*
86446865 TTAACCCGGATTTAGTAACTCGCACCAATGCCTTCGGG-C
1 TTAACCCGGATTTAGTAACTCGCACAAATGCCTTCGGGAC
* * *
86446904 TTAGCCCGAAATTAGTAACTCGCACAAATGCCTTCGGGAC
1 TTAACCCGGATTTAGTAACTCGCACAAATGCCTTCGGGAC
* *
86446944 TTAACCCGGATTTAGTAACTCGCTCAAATACCTTCGGGAC
1 TTAACCCGGATTTAGTAACTCGCACAAATGCCTTCGGGAC
*
86446984 CTAACCCGGAT
1 TTAACCCGGAT
86446995 ATCATTCGAA
Statistics
Matches: 146, Mismatches: 19, Indels: 9
0.84 0.11 0.05
Matches are distributed among these distances:
39 39 0.27
40 105 0.72
41 2 0.01
ACGTcount: A:0.27, C:0.28, G:0.20, T:0.24
Consensus pattern (40 bp):
TTAACCCGGATTTAGTAACTCGCACAAATGCCTTCGGGAC
Found at i:86453318 original size:21 final size:21
Alignment explanation
Indices: 86453294--86453341 Score: 69
Period size: 21 Copynumber: 2.3 Consensus size: 21
86453284 GGCACAGGCG
*
86453294 TGTCCCAGGGTCACACGGGCA
1 TGTCCCAAGGTCACACGGGCA
* *
86453315 TGTCCCAAGGTCATACGGGCG
1 TGTCCCAAGGTCACACGGGCA
86453336 TGTCCC
1 TGTCCC
86453342 TTGGACCACA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.17, C:0.33, G:0.31, T:0.19
Consensus pattern (21 bp):
TGTCCCAAGGTCACACGGGCA
Found at i:86455545 original size:26 final size:26
Alignment explanation
Indices: 86455507--86455558 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
86455497 GGTTCGATAC
* * *
86455507 TTTAATCACAAAATCGGTAGACTCAA
1 TTTAATAAAAAAATCGATAGACTCAA
*
86455533 TTTAATAAAAAAATTGATAGACTCAA
1 TTTAATAAAAAAATCGATAGACTCAA
86455559 CATGCAGACT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.48, C:0.13, G:0.10, T:0.29
Consensus pattern (26 bp):
TTTAATAAAAAAATCGATAGACTCAA
Found at i:86467376 original size:125 final size:125
Alignment explanation
Indices: 86467239--86467503 Score: 280
Period size: 125 Copynumber: 2.1 Consensus size: 125
86467229 ATCACAATCG
* * * * * ** **
86467239 AGCACGATTGGGCACAATTTATCGAATTTCCAAATATGAAATATTGCCTCATTTTGAT-TTAAGA
1 AGCACAATTGGGCACAATCTATCAAACTTCCAAACACAAAATATTGCCTCATTTCAATGTTAA-A
*
86467303 AAACAAAGATGAAATGGCAAAAGGATATTCCGTATCTTAGTCGAATGAAAAATCGAAAACC
65 AAACAAAGATGAAATGGCAAAAGGATATTCCGTATCTTAGTCGAACGAAAAATCGAAAACC
** * *
86467364 AGCATTATTGGGCACGATCTCTCAAACTTCCAAACACAAAATATTGCCTCATTTCAATGTTAAAA
1 AGCACAATTGGGCACAATCTATCAAACTTCCAAACACAAAATATTGCCTCATTTCAATGTTAAAA
** ** ** * * * * * *
86467429 AGTATGGATGAAATTTCCAAAGGATATTTCGTATTTTAGTTGAACGAAAAATTGAAACCC
66 AACAAAGATGAAATGGCAAAAGGATATTCCGTATCTTAGTCGAACGAAAAATCGAAAACC
86467489 AGCACAATTGGGCAC
1 AGCACAATTGGGCAC
86467504 CATTCCTCGG
Statistics
Matches: 112, Mismatches: 27, Indels: 2
0.79 0.19 0.01
Matches are distributed among these distances:
125 108 0.96
126 4 0.04
ACGTcount: A:0.39, C:0.17, G:0.16, T:0.28
Consensus pattern (125 bp):
AGCACAATTGGGCACAATCTATCAAACTTCCAAACACAAAATATTGCCTCATTTCAATGTTAAAA
AACAAAGATGAAATGGCAAAAGGATATTCCGTATCTTAGTCGAACGAAAAATCGAAAACC
Found at i:86468135 original size:37 final size:36
Alignment explanation
Indices: 86468081--86468179 Score: 94
Period size: 38 Copynumber: 2.6 Consensus size: 36
86468071 ACAAATTATG
* *
86468081 TATA-AATAAATTTAAAAG-GAAAATGAATAAAAATA
1 TATATAATAAATTTAAAAGAAAAAAAGAA-AAAAATA
*
86468116 TATATAATAGATTTAAAAAGAAAAAAAGAAAAGAATATA
1 TATATAATAAATTT-AAAAGAAAAAAAGAAAA-AA-ATA
*
86468155 TATATGTAATAAATATAAAAGAAAA
1 TATA--TAATAAATTTAAAAGAAAA
86468180 TATTTACATA
Statistics
Matches: 52, Mismatches: 5, Indels: 9
0.79 0.08 0.14
Matches are distributed among these distances:
35 4 0.08
36 8 0.15
37 7 0.13
38 9 0.17
39 7 0.13
40 9 0.17
41 8 0.15
ACGTcount: A:0.66, C:0.00, G:0.09, T:0.25
Consensus pattern (36 bp):
TATATAATAAATTTAAAAGAAAAAAAGAAAAAAATA
Found at i:86473082 original size:126 final size:125
Alignment explanation
Indices: 86472909--86473177 Score: 283
Period size: 125 Copynumber: 2.1 Consensus size: 125
86472899 ATCGCAATCT
* * * * * * **
86472909 ACCACAATTGGGCACGATTTATCGAATTTCCAAATATGAAATATTGCCTTATTTTTTAT-TTAAG
1 ACCACGATTGGGCACGATCTATCAAACTTCCAAATACGAAATATTGCCTCA-TTTCAATGTTAA-
* * * * *
86472973 AAAACATGGATGAAA-TGGCAAAAGGATATTTCGTATCTTGGTCGAATGAAAAATCGAAACCC
64 AAAACATGGACGAAATTGCCAAAA-GATATTCCGTATCTTAGTCGAACGAAAAATCGAAACCC
*
86473035 ACCACGATTGGGCACGATCTCTCAAACTTCC-AATCACGAAATATTGCCTCATTTCAATGTTAAA
1 ACCACGATTGGGCACGATCTATCAAACTTCCAAAT-ACGAAATATTGCCTCATTTCAATGTTAAA
** * * * * *
86473099 AAGTATGGACGAAATTTCCAATAGATATTCCGTATTTTAGTTGAACGAAAAATTGAAACCC
65 AAACATGGACGAAATTGCCAAAAGATATTCCGTATCTTAGTCGAACGAAAAATCGAAACCC
*
86473160 AGCACGATTGGGCACGAT
1 ACCACGATTGGGCACGAT
86473178 TCCTCGGACC
Statistics
Matches: 118, Mismatches: 22, Indels: 7
0.80 0.15 0.05
Matches are distributed among these distances:
125 69 0.58
126 49 0.42
ACGTcount: A:0.36, C:0.18, G:0.17, T:0.29
Consensus pattern (125 bp):
ACCACGATTGGGCACGATCTATCAAACTTCCAAATACGAAATATTGCCTCATTTCAATGTTAAAA
AACATGGACGAAATTGCCAAAAGATATTCCGTATCTTAGTCGAACGAAAAATCGAAACCC
Found at i:86473848 original size:29 final size:29
Alignment explanation
Indices: 86473789--86473848 Score: 77
Period size: 29 Copynumber: 2.0 Consensus size: 29
86473779 AAAATGAATG
* *
86473789 AAAATATATATAATAGATTTAAAAAGAAA
1 AAAATATATATAATAAATATAAAAAGAAA
86473818 AAAATATATATGTAATAAATAT-AAAAGAAA
1 AAAATATATA--TAATAAATATAAAAAGAAA
86473848 A
1 A
86473849 TATTTACATA
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
29 10 0.37
30 9 0.33
31 8 0.30
ACGTcount: A:0.67, C:0.00, G:0.07, T:0.27
Consensus pattern (29 bp):
AAAATATATATAATAAATATAAAAAGAAA
Found at i:86477430 original size:43 final size:42
Alignment explanation
Indices: 86477383--86477525 Score: 173
Period size: 43 Copynumber: 3.3 Consensus size: 42
86477373 TGAGATTACA
*
86477383 TGTAAGACCATGTCTAGGACATTGGCATTGTATTTCGATTATG
1 TGTAAGACCATGTCTGGGACATTGGCATTGTATTT-GATTATG
* * *
86477426 TGTAAGACCATGTCTGGGACATTGGTATCAT-TATGTGATTACG
1 TGTAAGACCATGTCTGGGACATTGGCAT--TGTATTTGATTATG
*
86477469 TGTAAGACCATGTCTGGGACATTGGCATCGTATTATGATT-TCG
1 TGTAAGACCATGTCTGGGACATTGGCATTGTATT-TGATTAT-G
*
86477512 TGTAAGACCCTGTC
1 TGTAAGACCATGTC
86477526 GGTGATAGTG
Statistics
Matches: 86, Mismatches: 9, Indels: 10
0.82 0.09 0.10
Matches are distributed among these distances:
42 3 0.03
43 78 0.91
44 4 0.05
45 1 0.01
ACGTcount: A:0.24, C:0.16, G:0.24, T:0.35
Consensus pattern (42 bp):
TGTAAGACCATGTCTGGGACATTGGCATTGTATTTGATTATG
Found at i:86477559 original size:86 final size:86
Alignment explanation
Indices: 86477380--86477573 Score: 216
Period size: 86 Copynumber: 2.3 Consensus size: 86
86477370 AGATGAGATT
* *
86477380 ACATGTAAGACCATGTCTAGGACATTGGCATTGTATTTCGATTATGTGTAAGACCATGTCTGGGA
1 ACATGTAAGACCATGTCTGGGACATTGGCATCGTATTTCGATTATGTGTAAGACCATGTCTGGGA
* * * **
86477445 CATTGGTATCATTATGTGATT
66 CAGTGGCATCATTAAGTGAAA
* *
86477466 ACGTGTAAGACCATGTCTGGGACATTGGCATCGTATTAT-GATT-TCGTGTAAGACCCTGTC-GG
1 ACATGTAAGACCATGTCTGGGACATTGGCATCGTATT-TCGATTAT-GTGTAAGACCATGTCTGG
*
86477528 TGATAGTGGCATCGA-TAAGTGAAA
64 -GACAGTGGCATC-ATTAAGTGAAA
* *
86477552 ACATGTAAAACCATATCTGGGA
1 ACATGTAAGACCATGTCTGGGA
86477574 TATGGAATTG
Statistics
Matches: 91, Mismatches: 13, Indels: 8
0.81 0.12 0.07
Matches are distributed among these distances:
85 3 0.03
86 86 0.95
87 2 0.02
ACGTcount: A:0.28, C:0.15, G:0.25, T:0.31
Consensus pattern (86 bp):
ACATGTAAGACCATGTCTGGGACATTGGCATCGTATTTCGATTATGTGTAAGACCATGTCTGGGA
CAGTGGCATCATTAAGTGAAA
Found at i:86481478 original size:42 final size:42
Alignment explanation
Indices: 86481419--86481621 Score: 207
Period size: 42 Copynumber: 4.8 Consensus size: 42
86481409 ATTAGGGTTT
* *
86481419 TGAGATTAT-GTGTAAGACCATATTTGGGATATGGAATC-AGTG
1 TGAGATT-TCGTGTAAGACCATATCTGGGATATGGAATCGA-TA
* *
86481461 TGAGATTTCATGTAAGACCATACCTGGGATAT-GACATCGATA
1 TGAGATTTCGTGTAAGACCATATCTGGGATATGGA-ATCGATA
* *
86481503 TGAGATTTCGTGTAAGACCATATCTGGGACATGGCATCGATA
1 TGAGATTTCGTGTAAGACCATATCTGGGATATGGAATCGATA
* * * *
86481545 TGAGACTTT-GTGTAAGACCATAGCTGGGCTATTGGCATCGAAA
1 TGAGA-TTTCGTGTAAGACCATATCTGGGATA-TGGAATCGATA
** * *
86481588 TGAGATCCCATGTAAGACCATATCTAGGATATGG
1 TGAGATTTCGTGTAAGACCATATCTGGGATATGG
86481622 CATTGGTATG
Statistics
Matches: 136, Mismatches: 18, Indels: 14
0.81 0.11 0.08
Matches are distributed among these distances:
41 3 0.02
42 95 0.70
43 38 0.28
ACGTcount: A:0.31, C:0.15, G:0.26, T:0.29
Consensus pattern (42 bp):
TGAGATTTCGTGTAAGACCATATCTGGGATATGGAATCGATA
Found at i:86481560 original size:84 final size:85
Alignment explanation
Indices: 86481419--86481624 Score: 240
Period size: 84 Copynumber: 2.4 Consensus size: 85
86481409 ATTAGGGTTT
* * *
86481419 TGAGATTAT-GTGTAAGACCATATTTGGGATATGGAATCAGTGTGAGATTTCATGTAAGACCATA
1 TGAGATT-TCGTGTAAGACCATATCTGGGATATGGCATCAGTATGAGATTTCATGTAAGACCATA
*
86481483 CCTGGGATA-TGACATCGATA
65 CCTGGGATATTGACATCGAAA
* *
86481503 TGAGATTTCGTGTAAGACCATATCTGGGACATGGCATC-GATATGAGACTTT-GTGTAAGACCAT
1 TGAGATTTCGTGTAAGACCATATCTGGGATATGGCATCAG-TATGAGA-TTTCATGTAAGACCAT
* * *
86481566 AGCTGGGCTATTGGCATCGAAA
64 ACCTGGGATATTGACATCGAAA
** * *
86481588 TGAGATCCCATGTAAGACCATATCTAGGATATGGCAT
1 TGAGATTTCGTGTAAGACCATATCTGGGATATGGCAT
86481625 TGGTATGGTA
Statistics
Matches: 104, Mismatches: 14, Indels: 7
0.83 0.11 0.06
Matches are distributed among these distances:
83 2 0.02
84 58 0.56
85 44 0.42
ACGTcount: A:0.31, C:0.15, G:0.25, T:0.29
Consensus pattern (85 bp):
TGAGATTTCGTGTAAGACCATATCTGGGATATGGCATCAGTATGAGATTTCATGTAAGACCATAC
CTGGGATATTGACATCGAAA
Found at i:86487367 original size:35 final size:35
Alignment explanation
Indices: 86487321--86487426 Score: 203
Period size: 35 Copynumber: 3.0 Consensus size: 35
86487311 TGGGCTTTTG
*
86487321 CAAGAAAGTTTTAATTTTATGAAATAAACCCTTGC
1 CAAGAAAGTTTTATTTTTATGAAATAAACCCTTGC
86487356 CAAGAAAGTTTTATTTTTATGAAATAAACCCTTGC
1 CAAGAAAGTTTTATTTTTATGAAATAAACCCTTGC
86487391 CAAGAAAGTTTTATTTTTATGAAATAAACCCTTGC
1 CAAGAAAGTTTTATTTTTATGAAATAAACCCTTGC
86487426 C
1 C
86487427 TTTAGTTGAT
Statistics
Matches: 70, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
35 70 1.00
ACGTcount: A:0.38, C:0.15, G:0.11, T:0.36
Consensus pattern (35 bp):
CAAGAAAGTTTTATTTTTATGAAATAAACCCTTGC
Found at i:86500248 original size:26 final size:27
Alignment explanation
Indices: 86500219--86500271 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 27
86500209 ATGACCAAAA
*
86500219 TACCCCTATAGGGTAAATGACT-ATTT
1 TACCCCTAGAGGGTAAATGACTGATTT
*
86500245 TACCCCTCGAGGGTAAATGACTGATTT
1 TACCCCTAGAGGGTAAATGACTGATTT
86500272 GTGCTATGAT
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
26 20 0.83
27 4 0.17
ACGTcount: A:0.28, C:0.21, G:0.19, T:0.32
Consensus pattern (27 bp):
TACCCCTAGAGGGTAAATGACTGATTT
Found at i:86506579 original size:17 final size:18
Alignment explanation
Indices: 86506552--86506585 Score: 61
Period size: 17 Copynumber: 1.9 Consensus size: 18
86506542 AATTAAATAT
86506552 ATGCATATTAATTTATTA
1 ATGCATATTAATTTATTA
86506570 ATGC-TATTAATTTATT
1 ATGCATATTAATTTATT
86506586 TAAACAAAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 12 0.75
18 4 0.25
ACGTcount: A:0.35, C:0.06, G:0.06, T:0.53
Consensus pattern (18 bp):
ATGCATATTAATTTATTA
Found at i:86506777 original size:25 final size:24
Alignment explanation
Indices: 86506760--86506810 Score: 68
Period size: 23 Copynumber: 2.1 Consensus size: 24
86506750 ATATATAAAG
86506760 TTGATAATAATTAATATATATTATAA
1 TTGAT-ATAATT-ATATATATTATAA
*
86506786 TTGATATAATTATATAT-TAATAA
1 TTGATATAATTATATATATTATAA
86506809 TT
1 TT
86506811 ATCATCTTTA
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
23 7 0.29
24 6 0.25
25 6 0.25
26 5 0.21
ACGTcount: A:0.47, C:0.00, G:0.04, T:0.49
Consensus pattern (24 bp):
TTGATATAATTATATATATTATAA
Found at i:86506787 original size:16 final size:15
Alignment explanation
Indices: 86506766--86506807 Score: 57
Period size: 16 Copynumber: 2.7 Consensus size: 15
86506756 AAAGTTGATA
86506766 ATAATTAATATATATT
1 ATAATTAATATA-ATT
*
86506782 ATAATTGATATAATT
1 ATAATTAATATAATT
86506797 ATATATTAATA
1 ATA-ATTAATA
86506808 ATTATCATCT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
15 6 0.26
16 17 0.74
ACGTcount: A:0.50, C:0.00, G:0.02, T:0.48
Consensus pattern (15 bp):
ATAATTAATATAATT
Found at i:86508598 original size:79 final size:81
Alignment explanation
Indices: 86508474--86508657 Score: 227
Period size: 79 Copynumber: 2.3 Consensus size: 81
86508464 GCTACTCGTT
* *
86508474 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAATGCCTTCGGGA-CTTAACCCG
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAATGCCTTC-GGATCTTAACCCG
* *
86508537 GATTTAGTAAC-TCGCA
65 GATATAGTAACTTAGCA
* **
86508553 CAAATGCCTTCGGG-CTTAGCCCGGAAT-TAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCG
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCAC-AATGCCTTCGGATCTTAACCCG
* *
86508616 GATATGGTCACTTAGCA
65 GATATAGTAACTTAGCA
86508633 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
86508658 CATCATTCAA
Statistics
Matches: 91, Mismatches: 9, Indels: 9
0.83 0.08 0.08
Matches are distributed among these distances:
78 24 0.26
79 48 0.53
80 19 0.21
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (81 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAATGCCTTCGGATCTTAACCCGG
ATATAGTAACTTAGCA
Found at i:86508657 original size:40 final size:40
Alignment explanation
Indices: 86508455--86508657 Score: 229
Period size: 39 Copynumber: 5.1 Consensus size: 40
86508445 CGGAATTTAA
** *
86508455 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* *
86508495 CCGGTTATAGTAACTCGCAC-AATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
86508534 CCGGATTTAGTAACTCGCACAAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
86508573 CCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
86508613 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
86508653 CCGGA
1 CCGGA
86508658 CATCATTCAA
Statistics
Matches: 139, Mismatches: 16, Indels: 16
0.81 0.09 0.09
Matches are distributed among these distances:
38 2 0.01
39 68 0.49
40 57 0.41
41 12 0.09
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:86530132 original size:84 final size:84
Alignment explanation
Indices: 86529991--86530237 Score: 277
Period size: 84 Copynumber: 2.9 Consensus size: 84
86529981 ATTAGGGTTT
** * * * *
86529991 TGAGA-TTACGTGTAAGACCATATCTAGGATATGACATCGGTCTGATATTTCATGTAAGCCCGTA
1 TGAGACTT-CGTGTAAGACCATATCTAGGATATGACATAAGTATGAGATTTCATGTAAGACCATA
*
86530055 TCTGGGATATGGCATTGATA
65 TCTGGGATATGGCAATGATA
* *
86530075 TGAGACTTCGTGGAAGACCATATCTAGGATATGGA-ATAAGTATGAGATTTCGTGTAAGACCATA
1 TGAGACTTCGTGTAAGACCATATCTAGGATAT-GACATAAGTATGAGATTTCATGTAAGACCATA
86530139 TCTGGGATATGGCAATGATA
65 TCTGGGATATGGCAATGATA
* * * * * **
86530159 TGAGACTTCGTGTAAGACCATAGCTGGGCTATTGGCATTGAA--ACGAGATCCCATGTAAGACCA
1 TGAGACTTCGTGTAAGACCATATCTAGGATA-TGACA-T-AAGTATGAGATTTCATGTAAGACCA
86530222 TATCTGGGATATGGCA
63 TATCTGGGATATGGCA
86530238 TTGGTATGGC
Statistics
Matches: 139, Mismatches: 18, Indels: 11
0.83 0.11 0.07
Matches are distributed among these distances:
84 97 0.70
85 39 0.28
86 1 0.01
87 2 0.01
ACGTcount: A:0.30, C:0.15, G:0.26, T:0.29
Consensus pattern (84 bp):
TGAGACTTCGTGTAAGACCATATCTAGGATATGACATAAGTATGAGATTTCATGTAAGACCATAT
CTGGGATATGGCAATGATA
Found at i:86530186 original size:42 final size:42
Alignment explanation
Indices: 86529991--86530237 Score: 232
Period size: 42 Copynumber: 5.9 Consensus size: 42
86529981 ATTAGGGTTT
* * * *
86529991 TGAGA-TTACGTGTAAGACCATATCTAGGATATGAC-ATCGGTC
1 TGAGACTT-CGTGTAAGACCATATCTGGGATATGGCAAT-GATA
* * * * * *
86530033 TGATATTTCATGTAAGCCCGTATCTGGGATATGGCATTGATA
1 TGAGACTTCGTGTAAGACCATATCTGGGATATGGCAATGATA
* * *
86530075 TGAGACTTCGTGGAAGACCATATCTAGGATATGG-AATAAGTA
1 TGAGACTTCGTGTAAGACCATATCTGGGATATGGCAATGA-TA
*
86530117 TGAGATTTCGTGTAAGACCATATCTGGGATATGGCAATGATA
1 TGAGACTTCGTGTAAGACCATATCTGGGATATGGCAATGATA
* * * *
86530159 TGAGACTTCGTGTAAGACCATAGCTGGGCTATTGGCATTGAAA
1 TGAGACTTCGTGTAAGACCATATCTGGGATA-TGGCAATGATA
* * *
86530202 CGAGA-TCCCATGTAAGACCATATCTGGGATATGGCA
1 TGAGACT-TCGTGTAAGACCATATCTGGGATATGGCA
86530238 TTGGTATGGC
Statistics
Matches: 167, Mismatches: 32, Indels: 12
0.79 0.15 0.06
Matches are distributed among these distances:
41 3 0.02
42 124 0.74
43 40 0.24
ACGTcount: A:0.30, C:0.15, G:0.26, T:0.29
Consensus pattern (42 bp):
TGAGACTTCGTGTAAGACCATATCTGGGATATGGCAATGATA
Found at i:86532910 original size:30 final size:29
Alignment explanation
Indices: 86532874--86532944 Score: 81
Period size: 30 Copynumber: 2.4 Consensus size: 29
86532864 TGTATTATTC
*
86532874 TTTTTGTATGTCATGCATTATTTTATTACT
1 TTTTTGTATGTCATGCATTATTTAATTA-T
*
86532904 TTTTTGTATAG-CATGTATTATTTAATTAT
1 TTTTTGTAT-GTCATGCATTATTTAATTAT
*
86532933 TACTTTGTATGT
1 T-TTTTGTATGT
86532945 TTGTACGTTT
Statistics
Matches: 35, Mismatches: 3, Indels: 6
0.80 0.07 0.14
Matches are distributed among these distances:
29 3 0.09
30 31 0.89
31 1 0.03
ACGTcount: A:0.23, C:0.07, G:0.11, T:0.59
Consensus pattern (29 bp):
TTTTTGTATGTCATGCATTATTTAATTAT
Found at i:86544948 original size:210 final size:210
Alignment explanation
Indices: 86544479--86546100 Score: 1780
Period size: 210 Copynumber: 7.8 Consensus size: 210
86544469 TAAGCTGCAG
86544479 CATAGCAGATCTCACCTTCAGATGTTTACGCTGAAGCAGATCCAAGATGACAGATCTTATCTCTC
1 CATAGCAGATCTCACCTTCAGATGTTTACGCTGAAGCAGATCCAAGATGACAGATCTTATCTCTC
*
86544544 TGTATTTGGCGGGGAGCAGATCGAAGATATAGCTGATTTGACTTTCACGTGTTTACGATGAAGCA
66 TGTATTCGGCGGGGAGCAGATCGAAGATATAGCTGATTTGACTTTCACGTGTTTACGATGAAGCA
* *
86544609 AATCT-A-A-GA----T---CTCTGTATTGTCAGAGAACAAATCAAAGTCTGGCATTTCCACTGT
131 AATCTAAGATGATTTGTCACCTCTGTATTGTCAGAGAACAAATCGAAGTCTGGCATTTCCACTTT
86544664 GATGGAAGGCAGACA
196 GATGGAAGGCAGACA
*
86544679 CATAGCAGATCTCACCTTCAGATGTTTACGCTGAAGCAGATCCAAGATGACAGATCTTATCTTTC
1 CATAGCAGATCTCACCTTCAGATGTTTACGCTGAAGCAGATCCAAGATGACAGATCTTATCTCTC
* ** * * *
86544744 TGTATTCGGCAGGGAATAGATCGAAGATATAGATGATTTGGCTTTCACGTGTTTACAATGAAGCA
66 TGTATTCGGCGGGGAGCAGATCGAAGATATAGCTGATTTGACTTTCACGTGTTTACGATGAAGCA
* *
86544809 AATCTAAGATGATTTGTCACCTCTATATTGTCAGAGAACAAATCGAAGTCTGGCATTTCCAGTTT
131 AATCTAAGATGATTTGTCACCTCTGTATTGTCAGAGAACAAATCGAAGTCTGGCATTTCCACTTT
*
86544874 GATGGAAGGCAGACG
196 GATGGAAGGCAGACA
* * * * *
86544889 CATAGCAAATCTCACCTTTAGATGTTTATGCTGAAGCAGATCCAATATGACAAATCTTATCTCTC
1 CATAGCAGATCTCACCTTCAGATGTTTACGCTGAAGCAGATCCAAGATGACAGATCTTATCTCTC
* * * *
86544954 TGTATTCGACGGGGAGCAGATTGAAGATATAGCTGATTTGACTTTTACGTGTTTACGGTGAAGCA
66 TGTATTCGGCGGGGAGCAGATCGAAGATATAGCTGATTTGACTTTCACGTGTTTACGATGAAGCA
* * *
86545019 AATCTAAGATGATTTGTTACCTCTGTATTGTCAGATAACAAATCGAAGTCTGGCATTTCCACTGT
131 AATCTAAGATGATTTGTCACCTCTGTATTGTCAGAGAACAAATCGAAGTCTGGCATTTCCACTTT
86545084 GATGGAAGGCAGACA
196 GATGGAAGGCAGACA
* * * *
86545099 CATAGCAGATCTCACCTTTAAACGATTA-GACTGAAGCAGATCCAAGATGACAGATCTTATCTCT
1 CATAGCAGATCTCACCTTCAGATGTTTACG-CTGAAGCAGATCCAAGATGACAGATCTTATCTCT
* *
86545163 CTGTATTCGGCAGGGAGCAGATCGAAGATATAGCTGATTTGACTTTCACGTGTTTACGATGAAGT
65 CTGTATTCGGCGGGGAGCAGATCGAAGATATAGCTGATTTGACTTTCACGTGTTTACGATGAAGC
* * *
86545228 AAATCTAAGATGATTTGTCGCCTTTGTATTGTCAGAAAACAAATCGAAGTCTGGCATTTCCACTT
130 AAATCTAAGATGATTTGTCACCTCTGTATTGTCAGAGAACAAATCGAAGTCTGGCATTTCCACTT
*
86545293 TGATGGAAGGCAGACG
195 TGATGGAAGGCAGACA
*
86545309 CATAGCAGATCTCACCTTCAGATGTTTACGCTGAAGCAGATCCAAGATGACAAATCTTATCTCTC
1 CATAGCAGATCTCACCTTCAGATGTTTACGCTGAAGCAGATCCAAGATGACAGATCTTATCTCTC
* * *
86545374 TGTATTCGGTGGGGAGCAGATCAAAGATATAGCTGATTTGACTTTCACGTGTTTACGTTGAAGCA
66 TGTATTCGGCGGGGAGCAGATCGAAGATATAGCTGATTTGACTTTCACGTGTTTACGATGAAGCA
* * * * *
86545439 AAGCTAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGTCTGGCATCTCCACTTC
131 AATCTAAGATGATTTGTCACCTCTGTATTGTCAGAGAACAAATCGAAGTCTGGCATTTCCACTTT
* * *
86545504 GACGGAGGGTAGACA
196 GATGGAAGGCAGACA
** * *
86545519 CATAGCAGATC-CAACCTTCAGATGTTTA-TATGAAGTAGATCCAAAATG---G-T-TTGGCATC
1 CATAGCAGATCTC-ACCTTCAGATGTTTACGCTGAAGCAGATCCAAGATGACAGATCTT---ATC
* * ** * ** * * * * * *
86545577 -CT-TGTGCTT--ACAAGGAGCAAATAAAAAACATAGCTGATTTGGCTTTCACGTGCTTGCGTTG
62 TCTCTGT-ATTCGGCGGGGAGCAGATCGAAGATATAGCTGATTTGACTTTCACGTGTTTACGATG
* * * ** *
86545638 AAACAAGTCTAAGATGATTTGGCATATCTGTATTGTCAGAGAACAAATCGAAGTCTGGCATCTCC
126 AAGCAAATCTAAGATGATTTGTCACCTCTGTATTGTCAGAGAACAAATCGAAGTCTGGCATTTCC
* * *
86545703 ACTTCGACGGAGGGCAGACA
191 ACTTTGATGGAAGGCAGACA
* ** * *
86545723 CATAGCAGATC-CAAACTTCAGATGTTTATACTGAAGTAAATCCAAGATG---G-T-TTGGCATC
1 CATAGCAGATCTC-ACCTTCAGATGTTTACGCTGAAGCAGATCCAAGATGACAGATCTT---ATC
* * ** * * * *
86545782 -CT-TGTGCTT--ACAAGGAGCA-ATTTCGAAGACATAGCTGATTTGGCTTTCACGTGCTTACGT
62 TCTCTGT-ATTCGGCGGGGAGCAGA--TCGAAGATATAGCTGATTTGACTTTCACGTGTTTACGA
* * * *
86545842 TGAAG-AAATCTAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAATCTGGCATCT
124 TGAAGCAAATCTAAGATGATTTGTCACCTCTGTATTGTCAGAGAACAAATCGAAGTCTGGCATTT
* * *
86545906 CCACTTCGACGGAGGGCAGACA
189 CCACTTTGATGGAAGGCAGACA
* * * * ** **
86545928 CATAGCAGATCTGACCTTCAGACGATTA-GACTGAAACAAGATCCAAGATG--ATTTCGCATC-C
1 CATAGCAGATCTCACCTTCAGATGTTTACG-CTGAAGC-AGATCCAAGATGACAGATCTTATCTC
* ** ** * * * * * *
86545989 T-TG--TGCTACAAGGAGCAAATTGAAGACATAGCTGATTT-AGTTTTCACGTGCTTATGATGAA
64 TCTGTATTCGGCGGGGAGCAGATCGAAGATATAGCTGATTTGA-CTTTCACGTGTTTACGATGAA
* *
86546050 GCAAATCTAAGATGATTTGTCATCTCTGTATTGTCAGAGAACAAATTGAAG
128 GCAAATCTAAGATGATTTGTCACCTCTGTATTGTCAGAGAACAAATCGAAG
86546101 AAGCAGATTT
Statistics
Matches: 1261, Mismatches: 130, Indels: 57
0.87 0.09 0.04
Matches are distributed among these distances:
200 127 0.10
201 1 0.00
202 1 0.00
203 3 0.00
204 188 0.15
205 211 0.17
206 61 0.05
207 4 0.00
208 1 0.00
209 18 0.01
210 645 0.51
211 1 0.00
ACGTcount: A:0.31, C:0.19, G:0.22, T:0.29
Consensus pattern (210 bp):
CATAGCAGATCTCACCTTCAGATGTTTACGCTGAAGCAGATCCAAGATGACAGATCTTATCTCTC
TGTATTCGGCGGGGAGCAGATCGAAGATATAGCTGATTTGACTTTCACGTGTTTACGATGAAGCA
AATCTAAGATGATTTGTCACCTCTGTATTGTCAGAGAACAAATCGAAGTCTGGCATTTCCACTTT
GATGGAAGGCAGACA
Found at i:86548547 original size:33 final size:31
Alignment explanation
Indices: 86548475--86548547 Score: 89
Period size: 30 Copynumber: 2.4 Consensus size: 31
86548465 ATTGATATTG
*
86548475 TATTATT-C-TTTTTGTATGTCATGCATTAT
1 TATTATTACTTTTTTGTATATCATGCATTAT
*
86548504 T-TTATTACTTTTTTGTATATCATGTATTATT
1 TATTATTACTTTTTTGTATATCATGCATTA-T
86548535 TAATTATTACTTT
1 T-ATTATTACTTT
86548548 GTATGTTTGT
Statistics
Matches: 37, Mismatches: 2, Indels: 6
0.82 0.04 0.13
Matches are distributed among these distances:
28 5 0.14
29 2 0.05
30 18 0.49
31 2 0.05
33 10 0.27
ACGTcount: A:0.23, C:0.08, G:0.07, T:0.62
Consensus pattern (31 bp):
TATTATTACTTTTTTGTATATCATGCATTAT
Found at i:86559443 original size:101 final size:98
Alignment explanation
Indices: 86559277--86559496 Score: 237
Period size: 101 Copynumber: 2.2 Consensus size: 98
86559267 CTGGTACGCA
* * * * *
86559277 TAGTA-CCTGCACTTAGTACTACACATGCGACCAATTATTCGGTACACGTAGTAGCCTGTAGTTA
1 TAGTAGCCTGCACTTAGTACTACACACGCGACAAATTATTCGGTACACATAGTAGCCTGCACTTA
* * *
86559341 GTACTACACACGTGACCTAACCATTTGATAAACG
66 GTACTACACACGCGACC-AACAATCTGATAAACG
* * *
86559375 TAGTAGCCTGCACTTAGTACTACACACGTGATCAAAGTTA-TCAGGTACGCATAGTAGCTTGCAC
1 TAGTAGCCTGCACTTAGTACTACACACGCGA-CAAA-TTATTC-GGTACACATAGTAGCCTGCAC
* * **
86559439 TTAGTACTACACATGCGACCAACAATCTGGTGCACG
63 TTAGTACTACACACGCGACCAACAATCTGATAAACG
* *
86559475 TAGTAGGCTGCACTTACTACTA
1 TAGTAGCCTGCACTTAGTACTA
86559497 ACCATGTGAC
Statistics
Matches: 101, Mismatches: 17, Indels: 6
0.81 0.14 0.05
Matches are distributed among these distances:
98 5 0.05
99 23 0.23
100 36 0.36
101 37 0.37
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.27
Consensus pattern (98 bp):
TAGTAGCCTGCACTTAGTACTACACACGCGACAAATTATTCGGTACACATAGTAGCCTGCACTTA
GTACTACACACGCGACCAACAATCTGATAAACG
Found at i:86559496 original size:49 final size:49
Alignment explanation
Indices: 86559265--86559496 Score: 200
Period size: 49 Copynumber: 4.7 Consensus size: 49
86559255 AGCTGAAGCT
* * * **
86559265 ATCTGGTACGCATAGTA-CCTGCACTTAGTACTACACATGCGACCAATT
1 ATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGCGACCAACA
* * * *
86559313 AT-TCGGTACACGTAGTAGCCTGTAGTTAGTACTACACACGTGACCTAACC
1 ATCT-GGTACACGTAGTAGCCTGCACTTAGTACTACACACGCGACC-AACA
* * * * *
86559363 ATTTGATAAACGTAGTAGCCTGCACTTAGTACTACACACGTGATCAA-A
1 ATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGCGACCAACA
* * * * *
86559411 GTTATCAGGTACGCATAGTAGCTTGCACTTAGTACTACACATGCGACCAACA
1 ---ATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGCGACCAACA
* * *
86559463 ATCTGGTGCACGTAGTAGGCTGCACTTACTACTA
1 ATCTGGTACACGTAGTAGCCTGCACTTAGTACTA
86559497 ACCATGTGAC
Statistics
Matches: 145, Mismatches: 31, Indels: 15
0.76 0.16 0.08
Matches are distributed among these distances:
47 1 0.01
48 13 0.09
49 52 0.36
50 40 0.28
51 38 0.26
52 1 0.01
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.27
Consensus pattern (49 bp):
ATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGCGACCAACA
Found at i:86559880 original size:35 final size:35
Alignment explanation
Indices: 86559829--86559895 Score: 116
Period size: 35 Copynumber: 1.9 Consensus size: 35
86559819 ATATTTCATA
*
86559829 ATAACAATCTTCATATCATATAAATAACATTAATG
1 ATAACAATCATCATATCATATAAATAACATTAATG
*
86559864 ATAATAATCATCATATCATATAAATAACATTA
1 ATAACAATCATCATATCATATAAATAACATTA
86559896 TATTACTTAA
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
35 30 1.00
ACGTcount: A:0.51, C:0.13, G:0.01, T:0.34
Consensus pattern (35 bp):
ATAACAATCATCATATCATATAAATAACATTAATG
Found at i:86559898 original size:19 final size:19
Alignment explanation
Indices: 86559841--86559898 Score: 61
Period size: 19 Copynumber: 3.2 Consensus size: 19
86559831 AACAATCTTC
86559841 ATATCATATAAATAACATT
1 ATATCATATAAATAACATT
* *
86559860 A-AT--GAT-AATAATCATC
1 ATATCATATAAATAA-CATT
86559876 ATATCATATAAATAACATT
1 ATATCATATAAATAACATT
86559895 ATAT
1 ATAT
86559899 TACTTAAATT
Statistics
Matches: 30, Mismatches: 4, Indels: 10
0.68 0.09 0.23
Matches are distributed among these distances:
15 5 0.17
16 6 0.20
17 2 0.07
18 2 0.07
19 10 0.33
20 5 0.17
ACGTcount: A:0.52, C:0.10, G:0.02, T:0.36
Consensus pattern (19 bp):
ATATCATATAAATAACATT
Found at i:86561839 original size:33 final size:34
Alignment explanation
Indices: 86561797--86561867 Score: 94
Period size: 34 Copynumber: 2.1 Consensus size: 34
86561787 TATGTGCATT
86561797 ACTGATACTG-CACTG-TAATGGGC-TAAGGCCCAC
1 ACTGATACTGCCACTGAT-ATGGGCTTAA-GCCCAC
*
86561830 ACTGATACTGCCACTGATATGGGCTTAAGCCCAG
1 ACTGATACTGCCACTGATATGGGCTTAAGCCCAC
86561864 ACTG
1 ACTG
86561868 TTCAGATATT
Statistics
Matches: 34, Mismatches: 1, Indels: 5
0.85 0.03 0.12
Matches are distributed among these distances:
33 10 0.29
34 20 0.59
35 4 0.12
ACGTcount: A:0.27, C:0.27, G:0.24, T:0.23
Consensus pattern (34 bp):
ACTGATACTGCCACTGATATGGGCTTAAGCCCAC
Found at i:86564548 original size:29 final size:30
Alignment explanation
Indices: 86564504--86564701 Score: 136
Period size: 30 Copynumber: 6.7 Consensus size: 30
86564494 AACCTTAGCT
* * *
86564504 ATCAAATTAGGAAAAGGGATGGTTACGACC
1 ATCAAATAATGAAAAGGGATGGTGACGACC
*
86564534 ATC-AATAATGAAAAGGGATGGTGATGACC
1 ATCAAATAATGAAAAGGGATGGTGACGACC
* * * *
86564563 ATCAAACAATGAAAAGGGATAGCT-TCGGA-T
1 ATCAAATAATGAAAAGGGAT-GGTGAC-GACC
* ** * * * * *
86564593 ATCGAATTGTGAAAAAGGATAGCT-TCGGCT
1 ATCAAATAATGAAAAGGGAT-GGTGACGACC
*
86564623 ATCAAATTATGAAAAGGGATGGTGACGACC
1 ATCAAATAATGAAAAGGGATGGTGACGACC
* * * *
86564653 AAC-AACAATGAAAAAGGATGGTGATGACC
1 ATCAAATAATGAAAAGGGATGGTGACGACC
*
86564682 ATCAAATAATAAAAAGGGAT
1 ATCAAATAATGAAAAGGGAT
86564702 AGCTTCGGCT
Statistics
Matches: 131, Mismatches: 31, Indels: 12
0.75 0.18 0.07
Matches are distributed among these distances:
29 52 0.40
30 75 0.57
31 4 0.03
ACGTcount: A:0.43, C:0.12, G:0.25, T:0.20
Consensus pattern (30 bp):
ATCAAATAATGAAAAGGGATGGTGACGACC
Found at i:86564725 original size:119 final size:118
Alignment explanation
Indices: 86564449--86564726 Score: 360
Period size: 119 Copynumber: 2.3 Consensus size: 118
86564439 AATCACCGGC
* * * *
86564449 TAATGAAATGGGATAGCTTCGGCTATCAAAGTAATGAAAATGTATAACCTTAGCTATCAAATTAG
1 TAATGAAAAGGGATAGCTTCGGCTATC-GAGT-ATGAAAAAGGATAACCTTAGCTATCAAATTAG
* * * *
86564514 GAAAAGGGATGGTTACGACCATCAATAATGAAAAGGGATGGTGATGACCATCAAA
64 GAAAAGGGATGGTGACGACCAACAACAATGAAAAAGGATGGTGATGACCATCAAA
* * * * * * *
86564569 CAATGAAAAGGGATAGCTTCGGATATCGAATTGTGAAAAAGGAT-AGCTTCGGCTATCAAATTAT
1 TAATGAAAAGGGATAGCTTCGGCTATCG-AGTATGAAAAAGGATAACCTT-AGCTATCAAATTAG
86564633 GAAAAGGGATGGTGACGACCAACAACAATGAAAAAGGATGGTGATGACCATCAAA
64 GAAAAGGGATGGTGACGACCAACAACAATGAAAAAGGATGGTGATGACCATCAAA
*
86564688 TAATAAAAAGGGATAGCTTCGGCTATCGAGCTATGAAAA
1 TAATGAAAAGGGATAGCTTCGGCTATCGAG-TATGAAAA
86564727 GGGTTGGGAC
Statistics
Matches: 135, Mismatches: 20, Indels: 7
0.83 0.12 0.04
Matches are distributed among these distances:
118 5 0.04
119 104 0.77
120 26 0.19
ACGTcount: A:0.41, C:0.13, G:0.24, T:0.22
Consensus pattern (118 bp):
TAATGAAAAGGGATAGCTTCGGCTATCGAGTATGAAAAAGGATAACCTTAGCTATCAAATTAGGA
AAAGGGATGGTGACGACCAACAACAATGAAAAAGGATGGTGATGACCATCAAA
Found at i:86569222 original size:144 final size:145
Alignment explanation
Indices: 86568975--86569564 Score: 665
Period size: 146 Copynumber: 4.0 Consensus size: 145
86568965 CAAAGTTTGC
* * * * * * * ** *
86568975 TTTAAAAAATCATTATTTTTATTAAAAACTAAAAC-TTTATTTCGAAATAGTTGAAAAAGCTAAA
1 TTTAAAAAAACACTATTTTTCTTAAAGATTAAAGCTTTTATTTTGAAATAGTTGAAAAAAATCAA
** * * * * *
86569039 AAAATTGTTTTAAAAAATTCAAACTTTTCCTTTAAAATGAATAATAAATATATTTTTA-TTTTAA
66 AACTTTGTTTT-AAAAATTTAAAC-TTTCCTTTAAAATGAATAAAAAACAGATTTTTATTTTTTA
86569103 AAATCTAAACTTTCTCT
129 AAATCTAAACTTTCTCT
86569120 TTTAAAAAAA-ACTATTTTTCTTAAAGATTAAAGCTTTTATTTTGAAATAGTTGAAAAAAAATCA
1 TTTAAAAAAACACTATTTTTCTTAAAGATTAAAGCTTTTATTTTGAAATAGTTG-AAAAAAATCA
* * *
86569184 AAATTTTGTTTTAAAGATTTAAACTTTCCTTTAAAATGACTAAAAAAAGCAGATTTTTATTTTTT
65 AAACTTTGTTTTAAAAATTTAAACTTTCCTTTAAAATGAAT-AAAAAA-CAGATTTTTATTTTTT
86569249 AAAATCTAAACTTTCTCT
128 AAAATCTAAACTTTCTCT
* *
86569267 TTAAAAAAAACACTATTTTTCTTAAAGATTAAAGCTTTTATTTTGAGATAGTT-AAAAAAATCAA
1 TTTAAAAAAACACTATTTTTCTTAAAGATTAAAGCTTTTATTTTGAAATAGTTGAAAAAAATCAA
*
86569331 AACTTTGTTTTAAAAATTTAAACTTTCTTTTAAAAT-AACTAAAAAACAGATTTTTATTTTTTAA
66 AACTTTGTTTTAAAAATTTAAACTTTCCTTTAAAATGAA-TAAAAAACAGATTTTTATTTTTTAA
86569395 AATCTAAACTTTCTCTTTTTTATTTTT
130 AATCTAAACTTTCTC-----------T
* *
86569422 TTTAAAAAAAACCACTATTTTTCTTAAAGATCAAAGCTTTTA-TTTGGAATAGTTGAAAAAAAAT
1 TTT-AAAAAAA-CACTATTTTTCTTAAAGATTAAAGCTTTTATTTTGAAATAGTTG-AAAAAAAT
* * * *
86569486 CAAAACTTTGTTTTAAAATTTTAAAATTTTCC-TTAAAATGATTAAAAAA-ATAGTTTTTATTTT
63 CAAAACTTTGTTTTAAAAATTT-AAACTTTCCTTTAAAATGAATAAAAAACAGA-TTTTTATTTT
86569549 TTAAAATCTAAACTTT
126 TTAAAATCTAAACTTT
86569565 TTTAAATATA
Statistics
Matches: 386, Mismatches: 34, Indels: 37
0.84 0.07 0.08
Matches are distributed among these distances:
144 68 0.18
145 48 0.12
146 70 0.18
147 31 0.08
148 41 0.11
155 3 0.01
156 17 0.04
157 31 0.08
158 69 0.18
159 8 0.02
ACGTcount: A:0.43, C:0.09, G:0.05, T:0.43
Consensus pattern (145 bp):
TTTAAAAAAACACTATTTTTCTTAAAGATTAAAGCTTTTATTTTGAAATAGTTGAAAAAAATCAA
AACTTTGTTTTAAAAATTTAAACTTTCCTTTAAAATGAATAAAAAACAGATTTTTATTTTTTAAA
ATCTAAACTTTCTCT
Found at i:86569347 original size:20 final size:20
Alignment explanation
Indices: 86569322--86569365 Score: 61
Period size: 20 Copynumber: 2.2 Consensus size: 20
86569312 AGATAGTTAA
*
86569322 AAAAATCAAAACTTTGTTTT
1 AAAAATCAAAACTTTCTTTT
**
86569342 AAAAATTTAAACTTTCTTTT
1 AAAAATCAAAACTTTCTTTT
86569362 AAAA
1 AAAA
86569366 TAACTAAAAA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.48, C:0.09, G:0.02, T:0.41
Consensus pattern (20 bp):
AAAAATCAAAACTTTCTTTT
Found at i:86569598 original size:146 final size:146
Alignment explanation
Indices: 86569043--86569564 Score: 648
Period size: 158 Copynumber: 3.5 Consensus size: 146
86569033 GCTAAAAAAA
* * * * * *
86569043 TTGTTTTAAAAAATTCAAACTTTTCCTTTAAAATGAAT-AATAAATATATTTTTA-TTTTAAAAA
1 TTGTTTT-AAAAATTTAAAC-TTTCCTTTAAAATGACTAAAAAAACAGATTTTTATTTTTTAAAA
*
86569106 TCTAAACTTTCTCTTT-TAAAAAAAACTATTTTTCTTAAAGATTAAAGCTTTTATTTTGAAATAG
64 TCTAAACTTTCTCTTTATAAAAAAAACTATTTTTCTTAAAGATTAAAGCTTTTA-TTTGGAATAG
*
86569170 TTGAAAAAAAATCAAAATT
128 TTGAAAAAAAATCAAAACT
*
86569189 TTGTTTTAAAGATTTAAACTTTCCTTTAAAATGACTAAAAAAAGCAGATTTTTATTTTTTAAAAT
1 TTGTTTTAAAAATTTAAACTTTCCTTTAAAATGACTAAAAAAA-CAGATTTTTATTTTTTAAAAT
*
86569254 CTAAACTTTCTCTTTA-AAAAAAACACTATTTTTCTTAAAGATTAAAGCTTTTATTTTGAGATAG
65 CTAAACTTTCTCTTTATAAAAAAA-ACTATTTTTCTTAAAGATTAAAGCTTTTATTTGGA-ATAG
86569318 TT--AAAAAAATCAAAACT
128 TTGAAAAAAAATCAAAACT
* *
86569335 TTGTTTTAAAAATTTAAACTTTCTTTTAAAATAACT-AAAAAACAGATTTTTATTTTTTAAAATC
1 TTGTTTTAAAAATTTAAACTTTCCTTTAAAATGACTAAAAAAACAGATTTTTATTTTTTAAAATC
*
86569399 TAAACTTTCTCTTTTTTATTTTTTTTAAAAAAAACCACTATTTTTCTTAAAGATCAAAGCTTTTA
66 TAAACTTTCTC---TTTA-------T-AAAAAAA--ACTATTTTTCTTAAAGATTAAAGCTTTTA
86569464 TTTGGAATAGTTGAAAAAAAATCAAAACT
118 TTTGGAATAGTTGAAAAAAAATCAAAACT
* * * *
86569493 TTGTTTTAAAATTTTAAAATTTTCC-TTAAAATGATTAAAAAAATAG-TTTTTATTTTTTAAAAT
1 TTGTTTTAAAAATTT-AAACTTTCCTTTAAAATGACTAAAAAAACAGATTTTTATTTTTTAAAAT
86569556 CTAAACTTT
65 CTAAACTTT
86569565 TTTAAATATA
Statistics
Matches: 332, Mismatches: 21, Indels: 34
0.86 0.05 0.09
Matches are distributed among these distances:
144 49 0.15
145 21 0.06
146 62 0.19
147 39 0.12
148 35 0.11
156 13 0.04
157 34 0.10
158 64 0.19
159 15 0.05
ACGTcount: A:0.42, C:0.09, G:0.05, T:0.44
Consensus pattern (146 bp):
TTGTTTTAAAAATTTAAACTTTCCTTTAAAATGACTAAAAAAACAGATTTTTATTTTTTAAAATC
TAAACTTTCTCTTTATAAAAAAAACTATTTTTCTTAAAGATTAAAGCTTTTATTTGGAATAGTTG
AAAAAAAATCAAAACT
Found at i:86570354 original size:42 final size:42
Alignment explanation
Indices: 86570302--86570605 Score: 389
Period size: 42 Copynumber: 7.3 Consensus size: 42
86570292 CTTTATATAC
* * *
86570302 AATGTAATGAAAAGTAAATGGATCTCCACACCTGGGCCTTTA
1 AATGCAATGAAAAGTAAATGGACCTCCACACCTGGGCCTCTA
* * *
86570344 AATTCAATGAAAAGCAAATGGACCTCCACACCTGGGTCTCTA
1 AATGCAATGAAAAGTAAATGGACCTCCACACCTGGGCCTCTA
* * * *
86570386 AATGTAATGAAAAGTGAATGGACTTCCACACCTAGGCCTCTA
1 AATGCAATGAAAAGTAAATGGACCTCCACACCTGGGCCTCTA
* *
86570428 AATGCAATAAAAAG-AGAATGGACCTCCACACCTGGGCCTTTA
1 AATGCAATGAAAAGTA-AATGGACCTCCACACCTGGGCCTCTA
* * *
86570470 AATGTAATGAAAAGTAAATGAACCTCCACACCTAGGCCTCTA
1 AATGCAATGAAAAGTAAATGGACCTCCACACCTGGGCCTCTA
* *
86570512 AATGCAAT-AAAATATAAATGGACCTCCACACCTGGGCTTCTA
1 AATGCAATGAAAA-GTAAATGGACCTCCACACCTGGGCCTCTA
* * *
86570554 AATGCAAT-CAAAGTAAATGGGCCTCCACACCTGGGACTCTA
1 AATGCAATGAAAAGTAAATGGACCTCCACACCTGGGCCTCTA
86570595 AATGCAATGAA
1 AATGCAATGAA
86570606 TGGTTCTTTT
Statistics
Matches: 223, Mismatches: 35, Indels: 8
0.84 0.13 0.03
Matches are distributed among these distances:
41 37 0.17
42 185 0.83
43 1 0.00
ACGTcount: A:0.38, C:0.23, G:0.17, T:0.22
Consensus pattern (42 bp):
AATGCAATGAAAAGTAAATGGACCTCCACACCTGGGCCTCTA
Found at i:86573050 original size:29 final size:28
Alignment explanation
Indices: 86573007--86573114 Score: 117
Period size: 29 Copynumber: 3.8 Consensus size: 28
86572997 TCCTAGTATG
* *
86573007 AATGTGACTGGGCCTAACGGACCATATA
1 AATGTGATTGGGCCTAACGGGCCATATA
86573035 AATGTGATTTGGGCCTAACGGGCCATATA
1 AATGTGA-TTGGGCCTAACGGGCCATATA
* * * *
86573064 CAGGTGATTTGGGCCTAATGGGCCATATG
1 AATGTGA-TTGGGCCTAACGGGCCATATA
* * *
86573093 AATATGATTAGGCCTAATGGGC
1 AATGTGATTGGGCCTAACGGGC
86573115 TAGATACAGG
Statistics
Matches: 69, Mismatches: 10, Indels: 2
0.85 0.12 0.02
Matches are distributed among these distances:
28 21 0.30
29 48 0.70
ACGTcount: A:0.28, C:0.18, G:0.29, T:0.26
Consensus pattern (28 bp):
AATGTGATTGGGCCTAACGGGCCATATA
Found at i:86585268 original size:43 final size:42
Alignment explanation
Indices: 86585212--86585382 Score: 166
Period size: 43 Copynumber: 4.0 Consensus size: 42
86585202 ATATCGTACA
** * * *
86585212 ATGCCAACGTCCCAAACGTGGTCTTACATGCAATCACATATCA
1 ATGCCAATATCCCAGACGTGGTCTTACACG-AATCACATATCG
* *
86585255 ATGCCACTATCCCAGACAG-GGTCTTACACGAATCAAATA-CG
1 ATGCCAATATCCCAGAC-GTGGTCTTACACGAATCACATATCG
* *
86585296 ATGCCAATGTCCCAGACATGGTCTTACACGTAATCACATATCG
1 ATGCCAATATCCCAGACGTGGTCTTACACG-AATCACATATCG
** * * *
86585339 ATGCCAACGTCCTAGACATGGTCTTACACGAGAACACATATCG
1 ATGCCAATATCCCAGACGTGGTCTTACACGA-ATCACATATCG
86585382 A
1 A
86585383 AAATCCTATG
Statistics
Matches: 109, Mismatches: 14, Indels: 10
0.82 0.11 0.08
Matches are distributed among these distances:
41 27 0.25
42 17 0.16
43 64 0.59
44 1 0.01
ACGTcount: A:0.33, C:0.29, G:0.16, T:0.22
Consensus pattern (42 bp):
ATGCCAATATCCCAGACGTGGTCTTACACGAATCACATATCG
Done.