Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A06
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 115140250
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2234201 characters in sequence are not A, C, G, or T
File 256 of 345
Found at i:86914666 original size:100 final size:100
Alignment explanation
Indices: 86914493--86914685 Score: 359
Period size: 100 Copynumber: 1.9 Consensus size: 100
86914483 ATTGAGTTTA
*
86914493 ATTATGTTATATTATACGATGAAATGTTAAATTGAGAATGATGGGATTTGAACTGAACTATGTGA
1 ATTATGTTATATTATACGATGAAATGTTAAATTGAGAATGATGGAATTTGAACTGAACTATGTGA
86914558 TGAATTTGGAAACTGGTTACTCTATTAACTGATAT
66 TGAATTTGGAAACTGGTTACTCTATTAACTGATAT
* *
86914593 ATTATGTTATATTATATGATGAAATGTTAAATTGAGAATGATGGAATTTGAATTGAACTATGTGA
1 ATTATGTTATATTATACGATGAAATGTTAAATTGAGAATGATGGAATTTGAACTGAACTATGTGA
86914658 TGAATTTGGAAACTGGTTACTCTATTAA
66 TGAATTTGGAAACTGGTTACTCTATTAA
86914686 ATGTACAAGA
Statistics
Matches: 90, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
100 90 1.00
ACGTcount: A:0.36, C:0.06, G:0.20, T:0.39
Consensus pattern (100 bp):
ATTATGTTATATTATACGATGAAATGTTAAATTGAGAATGATGGAATTTGAACTGAACTATGTGA
TGAATTTGGAAACTGGTTACTCTATTAACTGATAT
Found at i:86914760 original size:42 final size:40
Alignment explanation
Indices: 86914701--86914830 Score: 116
Period size: 42 Copynumber: 3.1 Consensus size: 40
86914691 CAAGATTATA
* *
86914701 CTTCAATTTGGTCGATGATGCACTTACGTGTCAGTATATTTG
1 CTTCAAATTGTTCGATGATGCACTTAC-TGT-AGTATATTTG
* * *
86914743 CTTCAAATTTTTCGATGATGCACTTATCTATTAGTATAATTG
1 CTTCAAATTGTTCGATGATGCACTTA-CT-GTAGTATATTTG
* ** * *
86914785 CTTTAGCTTGTTCGATAATGCACTTACATGATAGTATATTTA
1 CTTCAAATTGTTCGATGATGCACTTAC-TG-TAGTATATTTG
86914827 CTTC
1 CTTC
86914831 TGTACATCGA
Statistics
Matches: 70, Mismatches: 14, Indels: 8
0.76 0.15 0.09
Matches are distributed among these distances:
41 1 0.01
42 67 0.96
43 2 0.03
ACGTcount: A:0.25, C:0.16, G:0.15, T:0.43
Consensus pattern (40 bp):
CTTCAAATTGTTCGATGATGCACTTACTGTAGTATATTTG
Found at i:86914975 original size:43 final size:42
Alignment explanation
Indices: 86914869--86915019 Score: 146
Period size: 43 Copynumber: 3.6 Consensus size: 42
86914859 ACATGATTAA
* * *
86914869 TTTGGTTTATCTGATGATGCACTGTGTATGCCAATGTAATTGC
1 TTTGGTTTATCTGATGATGCACTATGTGTGCCAATATAATT-C
* * * **
86914912 TTCGGCTTGTCCAATGATGCACTATGTGTGCCAATATACATTC
1 TTTGGTTTATCTGATGATGCACTATGTGTGCCAATATA-ATTC
* *
86914955 TTTGGTTTATCTGATAATGCAC--TGTGTGCCAGA-ATATTTTC
1 TTTGGTTTATCTGATGATGCACTATGTGTGCCA-ATATA-ATTC
*
86914996 TTTGGTTTATCTGATGATGTACTA
1 TTTGGTTTATCTGATGATGCACTA
86915020 CAGTACCAGA
Statistics
Matches: 86, Mismatches: 18, Indels: 8
0.77 0.16 0.07
Matches are distributed among these distances:
41 35 0.41
42 1 0.01
43 47 0.55
44 3 0.03
ACGTcount: A:0.22, C:0.16, G:0.21, T:0.42
Consensus pattern (42 bp):
TTTGGTTTATCTGATGATGCACTATGTGTGCCAATATAATTC
Found at i:86920269 original size:43 final size:43
Alignment explanation
Indices: 86920208--86920296 Score: 178
Period size: 43 Copynumber: 2.1 Consensus size: 43
86920198 TGGGAGAATA
86920208 ATTTTGTAGAGGCCCCATTGGTGAACACCTTAGGGACTGAACC
1 ATTTTGTAGAGGCCCCATTGGTGAACACCTTAGGGACTGAACC
86920251 ATTTTGTAGAGGCCCCATTGGTGAACACCTTAGGGACTGAACC
1 ATTTTGTAGAGGCCCCATTGGTGAACACCTTAGGGACTGAACC
86920294 ATT
1 ATT
86920297 GGAAAATGAA
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 46 1.00
ACGTcount: A:0.26, C:0.22, G:0.25, T:0.27
Consensus pattern (43 bp):
ATTTTGTAGAGGCCCCATTGGTGAACACCTTAGGGACTGAACC
Found at i:86921214 original size:18 final size:18
Alignment explanation
Indices: 86921191--86921226 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
86921181 ATGCAAAGAG
*
86921191 AAAAATCTTGTCTTTAAC
1 AAAAATCTTGTCCTTAAC
86921209 AAAAATCTTGTCCTTAAC
1 AAAAATCTTGTCCTTAAC
86921227 TAGGAGAAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.39, C:0.19, G:0.06, T:0.36
Consensus pattern (18 bp):
AAAAATCTTGTCCTTAAC
Found at i:86922654 original size:42 final size:42
Alignment explanation
Indices: 86922552--86922690 Score: 127
Period size: 44 Copynumber: 3.2 Consensus size: 42
86922542 TTTGTTATCA
** * * *
86922552 TGTAAGACCACGTCTAGGATGTTGGTATCG-ACTTATGATTTATG
1 TGTAAGACCATATCTGGGATATTGGTATCGTA-TT-TGATTT-CG
*
86922596 TGTAAGACCATGTCTGGGATATTGGTATCGTATTTGATTTCG
1 TGTAAGACCATATCTGGGATATTGGTATCGTATTTGATTTCG
* * * * * *
86922638 TGTAAGACCCTATCTGGGACAATGGCATCGATATTTGATTACA
1 TGTAAGACCATATCTGGGATATTGGTATCG-TATTTGATTTCG
86922681 TGTAAGACCA
1 TGTAAGACCA
86922691 CGTCTGGACG
Statistics
Matches: 81, Mismatches: 12, Indels: 5
0.83 0.12 0.05
Matches are distributed among these distances:
42 26 0.32
43 25 0.31
44 29 0.36
45 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.24, T:0.35
Consensus pattern (42 bp):
TGTAAGACCATATCTGGGATATTGGTATCGTATTTGATTTCG
Found at i:86922673 original size:43 final size:42
Alignment explanation
Indices: 86922595--86922690 Score: 120
Period size: 42 Copynumber: 2.3 Consensus size: 42
86922585 TATGATTTAT
* * * * *
86922595 GTGTAAGACCATGTCTGGGATATTGGTATCGTATTTGATTTC
1 GTGTAAGACCATATCTGGGACAATGGCATCGTATTTGATTAC
*
86922637 GTGTAAGACCCTATCTGGGACAATGGCATCGATATTTGATTAC
1 GTGTAAGACCATATCTGGGACAATGGCATCG-TATTTGATTAC
*
86922680 ATGTAAGACCA
1 GTGTAAGACCA
86922691 CGTCTGGACG
Statistics
Matches: 45, Mismatches: 8, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
42 26 0.58
43 19 0.42
ACGTcount: A:0.27, C:0.16, G:0.24, T:0.33
Consensus pattern (42 bp):
GTGTAAGACCATATCTGGGACAATGGCATCGTATTTGATTAC
Found at i:86922697 original size:43 final size:43
Alignment explanation
Indices: 86922538--86922697 Score: 148
Period size: 43 Copynumber: 3.7 Consensus size: 43
86922528 CATAGGATTT
* *
86922538 GATATTTG-TTATCATGTAAGACCACGTCTAGGATGTTGGTATC
1 GATATTTGATTA-CATGTAAGACCACGTCTGGGATATTGGTATC
* ** *
86922581 GACT-TATGATTTATGTGTAAGACCATGTCTGGGATATTGGTATC
1 GA-TATTTGA-TTACATGTAAGACCACGTCTGGGATATTGGTATC
* * * * * *
86922625 G-TATTTGATTTCGTGTAAGACC-CTATCTGGGACAATGGCATC
1 GATATTTGATTACATGTAAGACCAC-GTCTGGGATATTGGTATC
86922667 GATATTTGATTACATGTAAGACCACGTCTGG
1 GATATTTGATTACATGTAAGACCACGTCTGG
86922698 ACGTTGGCAT
Statistics
Matches: 93, Mismatches: 17, Indels: 14
0.75 0.14 0.11
Matches are distributed among these distances:
42 28 0.30
43 33 0.35
44 29 0.31
45 3 0.03
ACGTcount: A:0.26, C:0.15, G:0.24, T:0.36
Consensus pattern (43 bp):
GATATTTGATTACATGTAAGACCACGTCTGGGATATTGGTATC
Found at i:86925733 original size:46 final size:46
Alignment explanation
Indices: 86925628--86925799 Score: 168
Period size: 46 Copynumber: 3.7 Consensus size: 46
86925618 GCCACATTAT
* * *
86925628 GAGAGCCAGTGTAAGACCATGTCTGGGATATGGCATCGGTTTCGAGAC
1 GAGAGCCAGTGTAAGA-CATGTCTGGGACAT-GCAACGGCTTCGAGAC
* * *
86925676 GAGGGCTAGTGTAAGATATGTCTGGGACATGCAACGGCCTT-GAGAC
1 GAGAGCCAGTGTAAGACATGTCTGGGACATGCAACGG-CTTCGAGAC
* * * * *
86925722 GTA-AGCCAGTGTAAGACATGTCTGGGACATGTATCGGCTACAAGAT
1 G-AGAGCCAGTGTAAGACATGTCTGGGACATGCAACGGCTTCGAGAC
* *
86925768 GATAGTCAGTGTAAGACCATGTCTGGGACATG
1 GAGAGCCAGTGTAAGA-CATGTCTGGGACATG
86925800 GCATCGACTT
Statistics
Matches: 104, Mismatches: 15, Indels: 11
0.80 0.12 0.08
Matches are distributed among these distances:
45 3 0.03
46 57 0.55
47 30 0.29
48 14 0.13
ACGTcount: A:0.27, C:0.17, G:0.32, T:0.23
Consensus pattern (46 bp):
GAGAGCCAGTGTAAGACATGTCTGGGACATGCAACGGCTTCGAGAC
Found at i:86925830 original size:47 final size:47
Alignment explanation
Indices: 86925630--86925854 Score: 165
Period size: 47 Copynumber: 4.8 Consensus size: 47
86925620 CACATTATGA
* ** *
86925630 GAGCCAGTGTAAGACCATGTCTGGGATATGGCATCGGTTTCGAGACGA-
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGACTT-GAGA-TAT
* * * * * **
86925678 GGGCTAGTGTAAGA-TATGTCTGGGACAT-GCAACGGCCTTGAGACGT
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATC-GACTTGAGATAT
* * * **
86925724 AAGCCAGTGTAAGA-CATGTCTGGGACAT-GTATCGGCTACAAGATGAT
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGACT-TGAGAT-AT
*
86925771 -AGTCAGTGTAAGACCATGTCTGGGACATGGCATCGACTTGAGATAT
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGACTTGAGATAT
* * * * *
86925817 GAGCCAGTATAAGACCGTGCCTAGGACATGGCAGCGAC
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGAC
86925855 ACCTTCTCCT
Statistics
Matches: 139, Mismatches: 31, Indels: 15
0.75 0.17 0.08
Matches are distributed among these distances:
45 3 0.02
46 52 0.37
47 65 0.47
48 19 0.14
ACGTcount: A:0.28, C:0.19, G:0.31, T:0.22
Consensus pattern (47 bp):
GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGACTTGAGATAT
Found at i:86925844 original size:140 final size:140
Alignment explanation
Indices: 86925589--86925846 Score: 297
Period size: 140 Copynumber: 1.8 Consensus size: 140
86925579 TGATTGAGCT
* **
86925589 AGTGTAAGAAATGTTTGGGATCTGCATCGGCCACATTATGAGAGCCAGTGTAAGACCATGTCTGG
1 AGTGTAAGAAATGTCTGGGATCTGCATCGGCCACAAGATGAGAGCCAGTGTAAGACCATGTCTGG
* ** * * * * * *
86925654 GATATGGCATCGGTTTCGAGACGAGGGCTAGTGTAAGATATGTCTGGGACATGCAACGGCCTTGA
66 GACATGGCATCGACTTCGAGACGAGAGCCAGTATAAGACATGCCTAGGACATGCAACGGCCTTGA
86925719 GACGTAAGCC
131 GACGTAAGCC
* * * * *
86925729 AGTGTAAGACATGTCTGGGA-CATGTATCGGCTACAAGATGATAGTCAGTGTAAGACCATGTCTG
1 AGTGTAAGAAATGTCTGGGATC-TGCATCGGCCACAAGATGAGAGCCAGTGTAAGACCATGTCTG
* *
86925793 GGACATGGCATCGACTT-GAGA-TATGAGCCAGTATAAGACCGTGCCTAGGACATG
65 GGACATGGCATCGACTTCGAGACGA-GAGCCAGTATAAGA-CATGCCTAGGACATG
86925847 GCAGCGACAC
Statistics
Matches: 96, Mismatches: 19, Indels: 6
0.79 0.16 0.05
Matches are distributed among these distances:
138 1 0.01
139 16 0.17
140 79 0.82
ACGTcount: A:0.28, C:0.18, G:0.30, T:0.24
Consensus pattern (140 bp):
AGTGTAAGAAATGTCTGGGATCTGCATCGGCCACAAGATGAGAGCCAGTGTAAGACCATGTCTGG
GACATGGCATCGACTTCGAGACGAGAGCCAGTATAAGACATGCCTAGGACATGCAACGGCCTTGA
GACGTAAGCC
Found at i:86935464 original size:13 final size:13
Alignment explanation
Indices: 86935446--86935472 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
86935436 AGAGGGAAAA
86935446 TCGGCAGAGGGTT
1 TCGGCAGAGGGTT
86935459 TCGGCAGAGGGTT
1 TCGGCAGAGGGTT
86935472 T
1 T
86935473 AGGTAAAATT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.15, C:0.15, G:0.44, T:0.26
Consensus pattern (13 bp):
TCGGCAGAGGGTT
Found at i:86945752 original size:58 final size:57
Alignment explanation
Indices: 86945684--86945794 Score: 159
Period size: 58 Copynumber: 1.9 Consensus size: 57
86945674 TGAATGTGAC
* * *
86945684 TGGGCCTAATGGGCCATATAAATGTGATTTGGGCCAAATTGGCCATATACAGGTGATT
1 TGGGCCTAATGGGCCATATAAATATGA-TTGGGCCAAATAGGCCAGATACAGGTGATT
* **
86945742 TGGGCCTAATGGGCCATATGAATATGATTGGGCTTAATAGGCCAGATACAGGT
1 TGGGCCTAATGGGCCATATAAATATGATTGGGCCAAATAGGCCAGATACAGGT
86945795 ATGTGAAATT
Statistics
Matches: 47, Mismatches: 6, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
57 22 0.47
58 25 0.53
ACGTcount: A:0.28, C:0.15, G:0.29, T:0.28
Consensus pattern (57 bp):
TGGGCCTAATGGGCCATATAAATATGATTGGGCCAAATAGGCCAGATACAGGTGATT
Found at i:86945784 original size:28 final size:29
Alignment explanation
Indices: 86945671--86945785 Score: 128
Period size: 29 Copynumber: 4.0 Consensus size: 29
86945661 GTGAACATGA
*
86945671 ATATGAATGTGA-CTGGGCCTAATGGGCC
1 ATATGAATGTGATTTGGGCCTAATGGGCC
* * *
86945699 ATATAAATGTGATTTGGGCCAAATTGGCC
1 ATATGAATGTGATTTGGGCCTAATGGGCC
*
86945728 ATAT-ACAGGTGATTTGGGCCTAATGGGCC
1 ATATGA-ATGTGATTTGGGCCTAATGGGCC
* * *
86945757 ATATGAATATGA-TTGGGCTTAATAGGCC
1 ATATGAATGTGATTTGGGCCTAATGGGCC
86945785 A
1 A
86945786 GATACAGGTA
Statistics
Matches: 73, Mismatches: 11, Indels: 6
0.81 0.12 0.07
Matches are distributed among these distances:
28 27 0.37
29 45 0.62
30 1 0.01
ACGTcount: A:0.29, C:0.15, G:0.28, T:0.29
Consensus pattern (29 bp):
ATATGAATGTGATTTGGGCCTAATGGGCC
Found at i:86948843 original size:15 final size:15
Alignment explanation
Indices: 86948824--86948864 Score: 55
Period size: 15 Copynumber: 2.7 Consensus size: 15
86948814 AAGGCAGAGG
86948824 AATCCAAGATAAAGA
1 AATCCAAGATAAAGA
* * *
86948839 TATCCAAGGTACAGA
1 AATCCAAGATAAAGA
86948854 AATCCAAGATA
1 AATCCAAGATA
86948865 CCATATCATA
Statistics
Matches: 21, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
15 21 1.00
ACGTcount: A:0.51, C:0.17, G:0.15, T:0.17
Consensus pattern (15 bp):
AATCCAAGATAAAGA
Found at i:86960324 original size:46 final size:46
Alignment explanation
Indices: 86960135--86960343 Score: 165
Period size: 46 Copynumber: 4.5 Consensus size: 46
86960125 TGTGATCTAA
* * * * *
86960135 TGTAAGACATGTCTGAGACATGCATCGGCCAC-ATTATGAGAGCCAA
1 TGTAAGACATGTCTGGGACATGCATCGGCTACGA-GATGATAGCCAG
* * * * ** *
86960181 TGTAAGACCATGTTTGGTACACGGCATCGGC-ATCGAGCTGAGGGCTAG
1 TGTAAGA-CATGTCTGGGACA-TGCATCGGCTA-CGAGATGATAGCCAG
* * * * *
86960229 TGTAAGACATGTCTGGGACATGCAACAGCCT-CAAGA-CATAAGCCGG
1 TGTAAGACATGTCTGGGACATGCATC-GGCTACGAGATGAT-AGCCAG
*
86960275 TGTAAGACATGTCTGGGACATGCATCGGCTACGAGATGATAGTCAG
1 TGTAAGACATGTCTGGGACATGCATCGGCTACGAGATGATAGCCAG
86960321 TGTAAGACCATGTCTGGGACATG
1 TGTAAGA-CATGTCTGGGACATG
86960344 GCATTGAATT
Statistics
Matches: 126, Mismatches: 27, Indels: 19
0.73 0.16 0.11
Matches are distributed among these distances:
45 4 0.03
46 57 0.45
47 41 0.33
48 23 0.18
49 1 0.01
ACGTcount: A:0.29, C:0.21, G:0.29, T:0.22
Consensus pattern (46 bp):
TGTAAGACATGTCTGGGACATGCATCGGCTACGAGATGATAGCCAG
Found at i:86960358 original size:47 final size:48
Alignment explanation
Indices: 86960174--86960397 Score: 133
Period size: 47 Copynumber: 4.8 Consensus size: 48
86960164 CACATTATGA
* * * * * *
86960174 GAGCCAATGTAAGACCATGTTTGGTACACGGCATCGGCAT-CGAGCTGA-
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATC-GAATACGAGAT-AT
* * * ** * *
86960222 GGGCTAGTGTAAGA-CATGTCTGGGACAT-GCAACAGCCT-CAAGACAT
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATC-GAATACGAGATAT
* * **
86960268 AAGCCGGTGTAAGA-CATGTCTGGGACAT-GCATCGGCTACGAGATGAT
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGAATACGAGAT-AT
* * *
86960315 -AGTCAGTGTAAGACCATGTCTGGGACATGGCATTGAAT-TGAGATAT
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGAATACGAGATAT
* * * *
86960361 GAGCCAGTATAAGACCATTTCTAGGATATGGCATCGA
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGA
86960398 CACCTTACCC
Statistics
Matches: 138, Mismatches: 32, Indels: 13
0.75 0.17 0.07
Matches are distributed among these distances:
45 4 0.03
46 55 0.40
47 62 0.45
48 17 0.12
ACGTcount: A:0.29, C:0.19, G:0.29, T:0.23
Consensus pattern (48 bp):
GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGAATACGAGATAT
Found at i:86967748 original size:43 final size:42
Alignment explanation
Indices: 86967659--86967764 Score: 115
Period size: 43 Copynumber: 2.5 Consensus size: 42
86967649 GTAAGACAAT
* * *** * **
86967659 GTCTGGGACATTGGCATCGTATTTGATTTTGTGTAAGTCCTT
1 GTCTGGGACAGTGGCATTGTATTTGATTACATGTAAGGCCAC
86967701 GTCTGGGACAGTGGCATTGATATTTGATTACATGTAAGGCCAC
1 GTCTGGGACAGTGGCATTG-TATTTGATTACATGTAAGGCCAC
86967744 GTCTGGGAC-GTTGGCATTGTA
1 GTCTGGGACAG-TGGCATTGTA
86967765 AGAGTTTTCT
Statistics
Matches: 54, Mismatches: 8, Indels: 4
0.82 0.12 0.06
Matches are distributed among these distances:
42 20 0.37
43 34 0.63
ACGTcount: A:0.20, C:0.15, G:0.29, T:0.36
Consensus pattern (42 bp):
GTCTGGGACAGTGGCATTGTATTTGATTACATGTAAGGCCAC
Found at i:86977304 original size:81 final size:81
Alignment explanation
Indices: 86977165--86977328 Score: 310
Period size: 81 Copynumber: 2.0 Consensus size: 81
86977155 TGTTTCTATG
* *
86977165 AATGCTTGAAGATTTAATTGGGATTTGTTTAATATGATGATAACCATGACTTAGGTGAGAATTGG
1 AATGCTTGAAGATTTAATTGGGATTTGTTTAATAAGATGATAACCATGACTTAAGTGAGAATTGG
86977230 TAAGATGGGCTTGATA
66 TAAGATGGGCTTGATA
86977246 AATGCTTGAAGATTTAATTGGGATTTGTTTAATAAGATGATAACCATGACTTAAGTGAGAATTGG
1 AATGCTTGAAGATTTAATTGGGATTTGTTTAATAAGATGATAACCATGACTTAAGTGAGAATTGG
86977311 TAAGATGGGCTTGATA
66 TAAGATGGGCTTGATA
86977327 AA
1 AA
86977329 GTATGGTGTC
Statistics
Matches: 81, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
81 81 1.00
ACGTcount: A:0.34, C:0.06, G:0.25, T:0.35
Consensus pattern (81 bp):
AATGCTTGAAGATTTAATTGGGATTTGTTTAATAAGATGATAACCATGACTTAAGTGAGAATTGG
TAAGATGGGCTTGATA
Found at i:86981948 original size:32 final size:32
Alignment explanation
Indices: 86981888--86981950 Score: 83
Period size: 32 Copynumber: 2.0 Consensus size: 32
86981878 TAGGTCACAG
* *
86981888 CCAATAATAGAATCAATTGGACCTAGCCCAAA
1 CCAATAACAGAATCAAGTGGACCTAGCCCAAA
*
86981920 CCAATAACAGAA-CAAGTGGGCCTAAGCCCAA
1 CCAATAACAGAATCAAGTGGACCT-AGCCCAA
86981951 TATAGTGACA
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
31 9 0.33
32 18 0.67
ACGTcount: A:0.43, C:0.27, G:0.16, T:0.14
Consensus pattern (32 bp):
CCAATAACAGAATCAAGTGGACCTAGCCCAAA
Found at i:86982939 original size:81 final size:81
Alignment explanation
Indices: 86982752--86983015 Score: 309
Period size: 81 Copynumber: 3.2 Consensus size: 81
86982742 CCAACAGGGA
* ** * *
86982752 TATTTCGATAATTTTAC-ACTACAAGGGTATTTTGATATTTTTACAAAAT-GGTGGTATTTCGGT
1 TATTTCGATAATTTTACAAAT-TGAGGGTATTTCGATAATTTTACAAAATAGG-GGTATTTCGGT
*
86982815 AATTTTTACAATCTGGGGG
64 AA-TTTTACAATTTGGGGG
* * * * *
86982834 TATTTTGGTAATTTTACAATTTGAGGGTATTTCGATAATTTTACAAAGTAGGGGTATTTCGATAA
1 TATTTCGATAATTTTACAAATTGAGGGTATTTCGATAATTTTACAAAATAGGGGTATTTCGGTAA
86982899 TTTTACAATTTGGGGG
66 TTTTACAATTTGGGGG
* **
86982915 TATTTCGATAATTTTACAAATTGAGGGTATTTC-AGTAATTTTATAATCTAGGGGTATTTCGGTA
1 TATTTCGATAATTTTACAAATTGAGGGTATTTCGA-TAATTTTACAAAATAGGGGTATTTCGGTA
* * *
86982979 ATTTTAAAATTCGAGGG
65 ATTTTACAATTTGGGGG
*
86982996 TATTTCAATAATTTTACAAA
1 TATTTCGATAATTTTACAAA
86983016 CCGAGGTCTT
Statistics
Matches: 158, Mismatches: 21, Indels: 7
0.85 0.11 0.04
Matches are distributed among these distances:
80 1 0.01
81 103 0.65
82 50 0.32
83 4 0.03
ACGTcount: A:0.30, C:0.08, G:0.19, T:0.43
Consensus pattern (81 bp):
TATTTCGATAATTTTACAAATTGAGGGTATTTCGATAATTTTACAAAATAGGGGTATTTCGGTAA
TTTTACAATTTGGGGG
Found at i:86983020 original size:27 final size:27
Alignment explanation
Indices: 86982747--86983021 Score: 224
Period size: 27 Copynumber: 10.1 Consensus size: 27
86982737 TTTACCCAAC
* *
86982747 AGGGATATTTCGATAATTTTAC-ACTACA
1 AGGG-TATTTCGATAATTTTACAAAT-CG
* *
86982775 AGGGTATTTTGATATTTTTACAAAAT-G
1 AGGGTATTTCGATAATTTTAC-AAATCG
*
86982802 -GTGGTATTTCGGTAATTTTTAC-AATCTG
1 AG-GGTATTTCGATAA-TTTTACAAATC-G
* * * * *
86982830 GGGGTATTTTGGTAATTTTACAATTTG
1 AGGGTATTTCGATAATTTTACAAATCG
*
86982857 AGGGTATTTCGATAATTTTACAAAGTAG
1 AGGGTATTTCGATAATTTTACAAA-TCG
* *
86982885 -GGGTATTTCGATAATTTTACAATTTG
1 AGGGTATTTCGATAATTTTACAAATCG
* *
86982911 GGGGTATTTCGATAATTTTACAAATTG
1 AGGGTATTTCGATAATTTTACAAATCG
* *
86982938 AGGGTATTTC-AGTAATTTTA-TAATCT
1 AGGGTATTTCGA-TAATTTTACAAATCG
*
86982964 AGGGGTATTTCGGTAATTTTA-AAATTCG
1 A-GGGTATTTCGATAATTTTACAAA-TCG
* *
86982992 AGGGTATTTCAATAATTTTACAAACCG
1 AGGGTATTTCGATAATTTTACAAATCG
86983019 AGG
1 AGG
86983022 TCTTAACGAC
Statistics
Matches: 204, Mismatches: 28, Indels: 31
0.78 0.11 0.12
Matches are distributed among these distances:
26 11 0.05
27 157 0.77
28 33 0.16
29 3 0.01
ACGTcount: A:0.30, C:0.08, G:0.20, T:0.41
Consensus pattern (27 bp):
AGGGTATTTCGATAATTTTACAAATCG
Found at i:86984795 original size:21 final size:20
Alignment explanation
Indices: 86984769--86984807 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
86984759 TGATTTACTC
86984769 CTCCAACAACCCATTCAAATT
1 CTCCAA-AACCCATTCAAATT
*
86984790 CTCCAAGACCCATTCAAA
1 CTCCAAAACCCATTCAAA
86984808 CTTAAAGTCC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 11 0.65
21 6 0.35
ACGTcount: A:0.38, C:0.38, G:0.03, T:0.21
Consensus pattern (20 bp):
CTCCAAAACCCATTCAAATT
Found at i:86987238 original size:27 final size:27
Alignment explanation
Indices: 86987214--86987445 Score: 247
Period size: 27 Copynumber: 8.6 Consensus size: 27
86987204 GTAGTTTGAC
86987214 AATTTTACAAACTGGGGGTATTTTGGT
1 AATTTTACAAACTGGGGGTATTTTGGT
* *
86987241 AATTTTA-AATTCTGGGGGTATTTCGGT
1 AATTTTACAA-ACTGGGGGTATTTTGGT
**
86987268 AATTTTACAAA-TTAGGGTATTTTGGT
1 AATTTTACAAACTGGGGGTATTTTGGT
* * * *
86987294 AATTTTACAAA-TCAGAGGTATTTCGAT
1 AATTTTACAAACT-GGGGGTATTTTGGT
* *
86987321 AATTTTACAATCTGGGGGTATTTTAGT
1 AATTTTACAAACTGGGGGTATTTTGGT
* *
86987348 AATTTTACATATTGGGGGTATTTTGGT
1 AATTTTACAAACTGGGGGTATTTTGGT
* *
86987375 AATTTTAC-AATTCGAGGGTATTTTGGT
1 AATTTTACAAACT-GGGGGTATTTTGGT
** * *
86987402 AATTTTACAATTTAGGGGTATTTTAGT
1 AATTTTACAAACTGGGGGTATTTTGGT
86987429 AATTTTACAAACTGGGG
1 AATTTTACAAACTGGGG
86987446 TCTTAACGAC
Statistics
Matches: 169, Mismatches: 30, Indels: 12
0.80 0.14 0.06
Matches are distributed among these distances:
26 29 0.17
27 134 0.79
28 6 0.04
ACGTcount: A:0.28, C:0.07, G:0.22, T:0.43
Consensus pattern (27 bp):
AATTTTACAAACTGGGGGTATTTTGGT
Found at i:86987272 original size:54 final size:54
Alignment explanation
Indices: 86987214--86987445 Score: 274
Period size: 54 Copynumber: 4.3 Consensus size: 54
86987204 GTAGTTTGAC
*
86987214 AATTTTACAAACTGGGGGTATTTTGGTAATTTTA-AATTCTGGGGGTATTTCGGT
1 AATTTTACAAACTGGGGGTATTTTGGTAATTTTACAATT-TAGGGGTATTTCGGT
** * * * *
86987268 AATTTTACAAA-TTAGGGTATTTTGGTAATTTTACAAATCAGAGGTATTTCGAT
1 AATTTTACAAACTGGGGGTATTTTGGTAATTTTACAATTTAGGGGTATTTCGGT
* * * *
86987321 AATTTTACAATCTGGGGGTATTTTAGTAATTTTAC-ATATTGGGGGTATTTTGGT
1 AATTTTACAAACTGGGGGTATTTTGGTAATTTTACAAT-TTAGGGGTATTTCGGT
* * **
86987375 AATTTTAC-AATTCGAGGGTATTTTGGTAATTTTACAATTTAGGGGTATTTTAGT
1 AATTTTACAAACT-GGGGGTATTTTGGTAATTTTACAATTTAGGGGTATTTCGGT
86987429 AATTTTACAAACTGGGG
1 AATTTTACAAACTGGGG
86987446 TCTTAACGAC
Statistics
Matches: 147, Mismatches: 25, Indels: 12
0.80 0.14 0.07
Matches are distributed among these distances:
53 44 0.30
54 98 0.67
55 5 0.03
ACGTcount: A:0.28, C:0.07, G:0.22, T:0.43
Consensus pattern (54 bp):
AATTTTACAAACTGGGGGTATTTTGGTAATTTTACAATTTAGGGGTATTTCGGT
Found at i:86987405 original size:81 final size:79
Alignment explanation
Indices: 86987214--86987439 Score: 301
Period size: 81 Copynumber: 2.8 Consensus size: 79
86987204 GTAGTTTGAC
** **
86987214 AATTTTACAAACTGGGGGTATTTTGGTAATTTTA-AATTCTGGGGGTATTTCGGTAATTTTACAA
1 AATTTTACAAA-TCAGGGTATTTTGGTAATTTTACAA-TCTGGGGGTATTTTAGTAATTTTACAA
86987278 ATTAGGGTATTTTGGT
64 ATTAGGGTATTTTGGT
* * *
86987294 AATTTTACAAATCAGAGGTATTTCGATAATTTTACAATCTGGGGGTATTTTAGTAATTTTACATA
1 AATTTTACAAATCAG-GGTATTTTGGTAATTTTACAATCTGGGGGTATTTTAGTAATTTTACAAA
*
86987359 TTGGGGGTATTTTGGT
65 TT-AGGGTATTTTGGT
* * *
86987375 AATTTTACAATTCGAGGGTATTTTGGTAATTTTACAATTTAGGGGTATTTTAGTAATTTTACAAA
1 AATTTTACAAATC-AGGGTATTTTGGTAATTTTACAATCTGGGGGTATTTTAGTAATTTTACAAA
86987440 CTGGGGTCTT
Statistics
Matches: 128, Mismatches: 14, Indels: 7
0.86 0.09 0.05
Matches are distributed among these distances:
79 2 0.02
80 54 0.42
81 70 0.55
82 2 0.02
ACGTcount: A:0.29, C:0.07, G:0.21, T:0.44
Consensus pattern (79 bp):
AATTTTACAAATCAGGGTATTTTGGTAATTTTACAATCTGGGGGTATTTTAGTAATTTTACAAAT
TAGGGTATTTTGGT
Found at i:86992288 original size:27 final size:27
Alignment explanation
Indices: 86992252--86992303 Score: 77
Period size: 27 Copynumber: 1.9 Consensus size: 27
86992242 TTTACGCACG
*
86992252 AGGGGCAAAATAGTCATTTAACTCCTT
1 AGGGGCAAAATAGTAATTTAACTCCTT
* *
86992279 AGGGGCAAAATTGTAATTTTACTCC
1 AGGGGCAAAATAGTAATTTAACTCC
86992304 ACAAGGGTAT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 22 1.00
ACGTcount: A:0.33, C:0.17, G:0.19, T:0.31
Consensus pattern (27 bp):
AGGGGCAAAATAGTAATTTAACTCCTT
Found at i:86992340 original size:27 final size:27
Alignment explanation
Indices: 86992291--86992651 Score: 463
Period size: 27 Copynumber: 13.4 Consensus size: 27
86992281 GGGCAAAATT
* * *
86992291 GTAATTTTACTCC-ACAAGGGTATCTCG
1 GTAATTCTAC-CCTACAGGGGTATTTCG
* * **
86992318 ATAATTCTACCCTACAGGAGTATTTTA
1 GTAATTCTACCCTACAGGGGTATTTCG
* *
86992345 GTATTTCTACCCTACAAGGGTATTTCG
1 GTAATTCTACCCTACAGGGGTATTTCG
* *
86992372 GTAATTCTATCCTACAGGGGCATTTCG
1 GTAATTCTACCCTACAGGGGTATTTCG
*
86992399 GTAATTCTACCCTACAAGGGTATTTCG
1 GTAATTCTACCCTACAGGGGTATTTCG
86992426 GTAATTCTACCCTACAGGGGTATTTCG
1 GTAATTCTACCCTACAGGGGTATTTCG
86992453 GTAATTCTACCCTACAGGGGTATTTCG
1 GTAATTCTACCCTACAGGGGTATTTCG
* * *
86992480 GTAATTCTACCTTACAGGGATATTTCA
1 GTAATTCTACCCTACAGGGGTATTTCG
* * **
86992507 ATAATTCTACCCTACAAGGGTATTTTA
1 GTAATTCTACCCTACAGGGGTATTTCG
* * * *
86992534 GAAATTCTACCCTACAAGAGCATTTCG
1 GTAATTCTACCCTACAGGGGTATTTCG
* *
86992561 GTAATTCTATCGTACAGGGGTATTTCG
1 GTAATTCTACCCTACAGGGGTATTTCG
86992588 GTAATTCTACCCTACAGGGGTATTTCG
1 GTAATTCTACCCTACAGGGGTATTTCG
* *
86992615 ATAATTCTACCTTACAGGGGTATTTCG
1 GTAATTCTACCCTACAGGGGTATTTCG
86992642 GTAATTCTAC
1 GTAATTCTAC
86992652 AACTTATCCA
Statistics
Matches: 287, Mismatches: 46, Indels: 2
0.86 0.14 0.01
Matches are distributed among these distances:
26 2 0.01
27 285 0.99
ACGTcount: A:0.26, C:0.21, G:0.18, T:0.35
Consensus pattern (27 bp):
GTAATTCTACCCTACAGGGGTATTTCG
Found at i:86998517 original size:27 final size:27
Alignment explanation
Indices: 86998487--86998751 Score: 345
Period size: 27 Copynumber: 9.8 Consensus size: 27
86998477 GGGGAAAAAT
* *
86998487 GGTAATTTTACTCC-ACAAGGGTATCTC
1 GGTAATTCTAC-CCTACAAGGGTATTTC
86998514 GGTAATTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
86998541 GGTATTTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* * *
86998568 AGTAATTCTATCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
86998595 GGTAATTCTACCCTACAGGGGTATTCC
1 GGTAATTCTACCCTACAAGGGTATTTC
**
86998622 AATAATTCTACCCTAC-AGAGGTATTTC
1 GGTAATTCTACCCTACAAG-GGTATTTC
* *
86998649 GGTAATTCTACCCTACAGGGGTATTTT
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
86998676 GATAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
86998703 AGTAATTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
86998730 AGAAATTCTACCCTACAAGGGT
1 GGTAATTCTACCCTACAAGGGT
86998752 TATTGTAACA
Statistics
Matches: 211, Mismatches: 24, Indels: 6
0.88 0.10 0.02
Matches are distributed among these distances:
26 3 0.01
27 207 0.98
28 1 0.00
ACGTcount: A:0.27, C:0.22, G:0.18, T:0.33
Consensus pattern (27 bp):
GGTAATTCTACCCTACAAGGGTATTTC
Found at i:87001650 original size:27 final size:26
Alignment explanation
Indices: 87001619--87001713 Score: 127
Period size: 27 Copynumber: 3.5 Consensus size: 26
87001609 GTTACAGTTA
*
87001619 TTCGGTAATTCTATCGTACAGGGGTAT
1 TTCGGTAATTCTA-CCTACAGGGGTAT
87001646 TTCGGTAATTCTACACTACAGGGGTAT
1 TTCGGTAATTCTAC-CTACAGGGGTAT
*
87001673 TTCGGTAATTCTACCTTACAAGGGTAT
1 TTCGGTAATTCTACC-TACAGGGGTAT
**
87001700 TTCAATAATTCTAC
1 TTCGGTAATTCTAC
87001714 AACTTATCCA
Statistics
Matches: 62, Mismatches: 4, Indels: 4
0.89 0.06 0.06
Matches are distributed among these distances:
26 2 0.03
27 60 0.97
ACGTcount: A:0.26, C:0.18, G:0.19, T:0.37
Consensus pattern (26 bp):
TTCGGTAATTCTACCTACAGGGGTAT
Found at i:87012710 original size:12 final size:12
Alignment explanation
Indices: 87012693--87012722 Score: 60
Period size: 12 Copynumber: 2.5 Consensus size: 12
87012683 ACGAAAGAGC
87012693 TAAAAGTGACAT
1 TAAAAGTGACAT
87012705 TAAAAGTGACAT
1 TAAAAGTGACAT
87012717 TAAAAG
1 TAAAAG
87012723 AACTAATTTT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.53, C:0.07, G:0.17, T:0.23
Consensus pattern (12 bp):
TAAAAGTGACAT
Found at i:87017411 original size:13 final size:13
Alignment explanation
Indices: 87017395--87017433 Score: 62
Period size: 13 Copynumber: 3.1 Consensus size: 13
87017385 CATAGTTTTT
87017395 AAAATTAATTATA
1 AAAATTAATTATA
87017408 AAAATTAATTAT-
1 AAAATTAATTATA
*
87017420 AAAATTAAATATA
1 AAAATTAATTATA
87017433 A
1 A
87017434 TGATTTTTTA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
12 11 0.46
13 13 0.54
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (13 bp):
AAAATTAATTATA
Found at i:87017423 original size:12 final size:12
Alignment explanation
Indices: 87017394--87017433 Score: 62
Period size: 12 Copynumber: 3.2 Consensus size: 12
87017384 ACATAGTTTT
87017394 TAAAATTAATTA
1 TAAAATTAATTA
87017406 TAAAAATTAATTA
1 T-AAAATTAATTA
*
87017419 TAAAATTAAATA
1 TAAAATTAATTA
87017431 TAA
1 TAA
87017434 TGATTTTTTA
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
12 14 0.54
13 12 0.46
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (12 bp):
TAAAATTAATTA
Found at i:87017444 original size:25 final size:25
Alignment explanation
Indices: 87017390--87017444 Score: 58
Period size: 25 Copynumber: 2.2 Consensus size: 25
87017380 ATAAACATAG
*
87017390 TTTT-TAAAATTAATTATAAAAATT
1 TTTTATAAAATTAAATATAAAAATT
** **
87017414 AATTATAAAATTAAATATAATGATT
1 TTTTATAAAATTAAATATAAAAATT
87017439 TTTTAT
1 TTTTAT
87017445 TAACAAAAGA
Statistics
Matches: 23, Mismatches: 7, Indels: 1
0.74 0.23 0.03
Matches are distributed among these distances:
24 2 0.09
25 21 0.91
ACGTcount: A:0.49, C:0.00, G:0.02, T:0.49
Consensus pattern (25 bp):
TTTTATAAAATTAAATATAAAAATT
Found at i:87017678 original size:18 final size:18
Alignment explanation
Indices: 87017655--87017689 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
87017645 TATATAATTA
87017655 AAATAATATTATAATGTG
1 AAATAATATTATAATGTG
*
87017673 AAATAATTTTATAATGT
1 AAATAATATTATAATGT
87017690 AACATAGTTC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.49, C:0.00, G:0.09, T:0.43
Consensus pattern (18 bp):
AAATAATATTATAATGTG
Found at i:87024582 original size:15 final size:15
Alignment explanation
Indices: 87024562--87024593 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
87024552 CCGATACTCG
87024562 TTGTAACAGCCCGAT
1 TTGTAACAGCCCGAT
*
87024577 TTGTAACATCCCGAT
1 TTGTAACAGCCCGAT
87024592 TT
1 TT
87024594 AGACCCTAGT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.25, C:0.25, G:0.16, T:0.34
Consensus pattern (15 bp):
TTGTAACAGCCCGAT
Found at i:87038914 original size:43 final size:42
Alignment explanation
Indices: 87038837--87038941 Score: 124
Period size: 43 Copynumber: 2.5 Consensus size: 42
87038827 GAGATTTATA
* * *
87038837 TGTAAGACCATGTCTGCGACATCGGCATCGTATTTGATT-TAG
1 TGTAAGACCATGTCTGGGATATCGGAATCGTATTTGATTGT-G
*
87038879 TGTAAGACCTTGTCTGGGATAGT-GGAATCGATATTTGATTGTG
1 TGTAAGACCATGTCTGGGATA-TCGGAATCG-TATTTGATTGTG
*
87038922 TGTAAGACCACGTCTGGGAT
1 TGTAAGACCATGTCTGGGAT
87038942 GTTGTCATTG
Statistics
Matches: 54, Mismatches: 6, Indels: 5
0.83 0.09 0.08
Matches are distributed among these distances:
42 24 0.44
43 29 0.54
44 1 0.02
ACGTcount: A:0.24, C:0.15, G:0.28, T:0.33
Consensus pattern (42 bp):
TGTAAGACCATGTCTGGGATATCGGAATCGTATTTGATTGTG
Found at i:87039644 original size:23 final size:23
Alignment explanation
Indices: 87039618--87039667 Score: 57
Period size: 23 Copynumber: 2.2 Consensus size: 23
87039608 ATGTTTTTGT
*
87039618 ATGACTTTGGCATATGATTTAA-C
1 ATGACTTTGGCATA-GATATAAGC
* *
87039641 ATGATTTTGGTATAGATATAAGC
1 ATGACTTTGGCATAGATATAAGC
87039664 ATGA
1 ATGA
87039668 AATTGGTTGT
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
22 6 0.26
23 17 0.74
ACGTcount: A:0.34, C:0.08, G:0.20, T:0.38
Consensus pattern (23 bp):
ATGACTTTGGCATAGATATAAGC
Found at i:87046245 original size:44 final size:43
Alignment explanation
Indices: 87046195--87046344 Score: 146
Period size: 43 Copynumber: 3.5 Consensus size: 43
87046185 ATGTGATTCC
*
87046195 GTGTAAGACCACGTCTGGGACATTGGTATC-AATTTGAGATTTAT
1 GTGTAAGACCACGTCTGGGACATTGGCATCGAATTT--GATTTAT
* * ** *
87046239 GTGTAAGACCATGTCTGGAACATCAGCATCGTATTTGATTT-T
1 GTGTAAGACCACGTCTGGGACATTGGCATCGAATTTGATTTAT
* * *
87046281 GTGTAAGACC-CAATCTAGGACAGTGGCATCGATATTTGA-TTAT
1 GTGTAAGACCAC-GTCTGGGACATTGGCATCGA-ATTTGATTTAT
*
87046324 ATGTAAGACCACGTCTGGGAC
1 GTGTAAGACCACGTCTGGGAC
87046345 GTTGACATTG
Statistics
Matches: 84, Mismatches: 17, Indels: 11
0.75 0.15 0.10
Matches are distributed among these distances:
42 26 0.31
43 28 0.33
44 26 0.31
45 4 0.05
ACGTcount: A:0.28, C:0.17, G:0.24, T:0.31
Consensus pattern (43 bp):
GTGTAAGACCACGTCTGGGACATTGGCATCGAATTTGATTTAT
Found at i:87048548 original size:39 final size:39
Alignment explanation
Indices: 87048449--87048658 Score: 197
Period size: 39 Copynumber: 5.4 Consensus size: 39
87048439 ATTTGGATGG
* * * * *
87048449 TAATCACATTCACTTTTAAGCATATATCATATTACACATA
1 TAATCACA-TAACATTTAAGCATATATCACAATACTCATA
* * ** * *
87048489 TAGTCACCTAACATACAAGCATATATCACAGTACTCAAA
1 TAATCACATAACATTTAAGCATATATCACAATACTCATA
* *
87048528 TAATCACATAATATTTAAGCATATATCACAATACTCGTA
1 TAATCACATAACATTTAAGCATATATCACAATACTCATA
** * *
87048567 TAATTTCATAACATTCAAGCATATATCACAATA-TCACA
1 TAATCACATAACATTTAAGCATATATCACAATACTCATA
* * * **
87048605 TAATCACATGACATTTAAACATATATCACATTACTTGTA
1 TAATCACATAACATTTAAGCATATATCACAATACTCATA
*
87048644 TAATCAAATAACATT
1 TAATCACATAACATT
87048659 AATAATTTAA
Statistics
Matches: 134, Mismatches: 35, Indels: 3
0.78 0.20 0.02
Matches are distributed among these distances:
38 30 0.22
39 98 0.73
40 6 0.04
ACGTcount: A:0.43, C:0.20, G:0.04, T:0.32
Consensus pattern (39 bp):
TAATCACATAACATTTAAGCATATATCACAATACTCATA
Found at i:87048554 original size:78 final size:77
Alignment explanation
Indices: 87048449--87048657 Score: 220
Period size: 78 Copynumber: 2.7 Consensus size: 77
87048439 ATTTGGATGG
* * * * *
87048449 TAATCACATTCACTTTTAAGCATATATCATATTACACATATAGTCACCTAACATACAAGCATATA
1 TAATCACA-TAACATTTAAGCATATATCACATTACACATATAATCACATAACATACAAGCATATA
*
87048514 TCACAGTACTCAAA
65 TCACAATA-TCAAA
* * * * ** *
87048528 TAATCACATAATATTTAAGCATATATCACAATACTCGTATAATTTCATAACATTCAAGCATATAT
1 TAATCACATAACATTTAAGCATATATCACATTACACATATAATCACATAACATACAAGCATATAT
*
87048593 CACAATATCACA
66 CACAATATCAAA
* * *** *
87048605 TAATCACATGACATTTAAACATATATCACATTACTTGTATAATCAAATAACAT
1 TAATCACATAACATTTAAGCATATATCACATTACACATATAATCACATAACAT
87048658 TAATAATTTA
Statistics
Matches: 108, Mismatches: 22, Indels: 2
0.82 0.17 0.02
Matches are distributed among these distances:
77 49 0.45
78 51 0.47
79 8 0.07
ACGTcount: A:0.44, C:0.20, G:0.04, T:0.32
Consensus pattern (77 bp):
TAATCACATAACATTTAAGCATATATCACATTACACATATAATCACATAACATACAAGCATATAT
CACAATATCAAA
Found at i:87048633 original size:77 final size:78
Alignment explanation
Indices: 87048497--87048647 Score: 223
Period size: 77 Copynumber: 1.9 Consensus size: 78
87048487 TATAGTCACC
* * *
87048497 TAACATACAAGCATATATCACAGTACTCAAATAATCACATAATATTTAAGCATATATCACAATAC
1 TAACATACAAGCATATATCACAATACTCAAATAATCACATAACATTTAAACATATATCACAATAC
87048562 TCGTATAATTTCA
66 TCGTATAATTTCA
* * * *
87048575 TAACATTCAAGCATATATCACAATA-TCACATAATCACATGACATTTAAACATATATCACATTAC
1 TAACATACAAGCATATATCACAATACTCAAATAATCACATAACATTTAAACATATATCACAATAC
*
87048639 TTGTATAAT
66 TCGTATAAT
87048648 CAAATAACAT
Statistics
Matches: 65, Mismatches: 8, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
77 42 0.65
78 23 0.35
ACGTcount: A:0.44, C:0.19, G:0.05, T:0.32
Consensus pattern (78 bp):
TAACATACAAGCATATATCACAATACTCAAATAATCACATAACATTTAAACATATATCACAATAC
TCGTATAATTTCA
Found at i:87053600 original size:48 final size:47
Alignment explanation
Indices: 87053528--87053692 Score: 162
Period size: 48 Copynumber: 3.6 Consensus size: 47
87053518 TGAGAGCCAG
* * * *
87053528 TGTAAGACAATGTCTGGGACATGGCATCGGCATTGATATGTG-TACCA
1 TGTAAGACCATATCTGGGATATGGCATC-GCATTGATATGTGATTCCA
* * * * *
87053575 GTGTAAGACCATATCTGGGATATGGCGTCAGCCTCGGTATGTGATTTCA
1 -TGTAAGACCATATCTGGGATATGGCATC-GCATTGATATGTGATTCCA
* *
87053624 TGTAAGACCATATCTGGGATAT-G-A---CATTGATATGAGATTTCA
1 TGTAAGACCATATCTGGGATATGGCATCGCATTGATATGTGATTCCA
87053666 TGTAAGACCATATCTGGGATATGGCAT
1 TGTAAGACCATATCTGGGATATGGCAT
87053693 TGATATGAGA
Statistics
Matches: 98, Mismatches: 15, Indels: 11
0.79 0.12 0.09
Matches are distributed among these distances:
42 36 0.37
43 1 0.01
44 1 0.01
47 1 0.01
48 56 0.57
49 3 0.03
ACGTcount: A:0.28, C:0.16, G:0.26, T:0.30
Consensus pattern (47 bp):
TGTAAGACCATATCTGGGATATGGCATCGCATTGATATGTGATTCCA
Found at i:87053676 original size:42 final size:42
Alignment explanation
Indices: 87053612--87053718 Score: 187
Period size: 42 Copynumber: 2.5 Consensus size: 42
87053602 TCAGCCTCGG
*
87053612 TATGTGATTTCATGTAAGACCATATCTGGGATATGACATTGA
1 TATGAGATTTCATGTAAGACCATATCTGGGATATGACATTGA
*
87053654 TATGAGATTTCATGTAAGACCATATCTGGGATATGGCATTGA
1 TATGAGATTTCATGTAAGACCATATCTGGGATATGACATTGA
*
87053696 TATGAGATTTCGTGTAAGACCAT
1 TATGAGATTTCATGTAAGACCAT
87053719 GTCTAGGACA
Statistics
Matches: 62, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
42 62 1.00
ACGTcount: A:0.31, C:0.12, G:0.22, T:0.35
Consensus pattern (42 bp):
TATGAGATTTCATGTAAGACCATATCTGGGATATGACATTGA
Found at i:87053732 original size:42 final size:42
Alignment explanation
Indices: 87053612--87053743 Score: 174
Period size: 42 Copynumber: 3.1 Consensus size: 42
87053602 TCAGCCTCGG
* * * *
87053612 TATGTGATTTCATGTAAGACCATATCTGGGATATGACATTGA
1 TATGAGATTTCATGTAAGACCATATCTAGGACATGGCATTGA
* *
87053654 TATGAGATTTCATGTAAGACCATATCTGGGATATGGCATTGA
1 TATGAGATTTCATGTAAGACCATATCTAGGACATGGCATTGA
* * *
87053696 TATGAGATTTCGTGTAAGACCATGTCTAGGACATGGCATCGA
1 TATGAGATTTCATGTAAGACCATATCTAGGACATGGCATTGA
*
87053738 TGTGAG
1 TATGAG
87053744 GTCCCGTGTA
Statistics
Matches: 82, Mismatches: 8, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
42 82 1.00
ACGTcount: A:0.30, C:0.13, G:0.25, T:0.33
Consensus pattern (42 bp):
TATGAGATTTCATGTAAGACCATATCTAGGACATGGCATTGA
Found at i:87053752 original size:42 final size:42
Alignment explanation
Indices: 87053624--87053778 Score: 139
Period size: 42 Copynumber: 3.7 Consensus size: 42
87053614 TGTGATTTCA
* * * * * ** *
87053624 TGTAAGACCATATCTGGGATATGACATTGATATGAGATTTCA
1 TGTAAGACCATGTCTAGGACATGGCATCGATATGAGATCCCG
* * * * **
87053666 TGTAAGACCATATCTGGGATATGGCATTGATATGAGATTTCG
1 TGTAAGACCATGTCTAGGACATGGCATCGATATGAGATCCCG
* *
87053708 TGTAAGACCATGTCTAGGACATGGCATCGATGTGAGGTCCCG
1 TGTAAGACCATGTCTAGGACATGGCATCGATATGAGATCCCG
* * *
87053750 TGTAAGACGATGTCTAAGCCATGGCATCG
1 TGTAAGACCATGTCTAGGACATGGCATCG
87053779 GCACCGGCGT
Statistics
Matches: 100, Mismatches: 13, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
42 100 1.00
ACGTcount: A:0.28, C:0.16, G:0.26, T:0.29
Consensus pattern (42 bp):
TGTAAGACCATGTCTAGGACATGGCATCGATATGAGATCCCG
Found at i:87053757 original size:84 final size:88
Alignment explanation
Indices: 87053575--87053757 Score: 194
Period size: 84 Copynumber: 2.1 Consensus size: 88
87053565 ATGTGTACCA
* * *
87053575 GTGTAAGACCATATCTGGGATATGGCGTCAGCCTCGGTATGTGATTTCATGTAAGACCATATCTG
1 GTGTAAGACCATATCTGGGATATGGCGTCA--CTCGATATGAGATTTCATGTAAGACCATATCTA
* * **
87053640 GGATATGACATTGATATGAGATTTC
64 GGACATGACATCGATATGAGATCCC
* * * *
87053665 ATGTAAGACCATATCTGGGATAT-G-G-CA-TTGATATGAGATTTCGTGTAAGACCATGTCTAGG
1 GTGTAAGACCATATCTGGGATATGGCGTCACTCGATATGAGATTTCATGTAAGACCATATCTAGG
* * *
87053726 ACATGGCATCGATGTGAGGTCCC
66 ACATGACATCGATATGAGATCCC
87053749 GTGTAAGAC
1 GTGTAAGAC
87053758 GATGTCTAAG
Statistics
Matches: 78, Mismatches: 15, Indels: 6
0.79 0.15 0.06
Matches are distributed among these distances:
84 52 0.67
87 2 0.03
88 1 0.01
89 1 0.01
90 22 0.28
ACGTcount: A:0.27, C:0.16, G:0.27, T:0.30
Consensus pattern (88 bp):
GTGTAAGACCATATCTGGGATATGGCGTCACTCGATATGAGATTTCATGTAAGACCATATCTAGG
ACATGACATCGATATGAGATCCC
Found at i:87061253 original size:42 final size:44
Alignment explanation
Indices: 87061193--87061312 Score: 127
Period size: 42 Copynumber: 2.8 Consensus size: 44
87061183 TAATCAAATG
* * * *
87061193 TCGATGACACTGTCCTAGACAAGGTCTTACAC-AAAATCATATA
1 TCGATGCCAATGTCCTAGACAAGGTCTTACACGAAAATCACAAA
* *
87061236 -CGATGCCAATGTCCTAGACATGGTCTTACACGTAAATCACAAA
1 TCGATGCCAATGTCCTAGACAAGGTCTTACACGAAAATCACAAA
* * ***
87061279 TCGATGCCAACGTCCCAGACGTTGTCTTACACGA
1 TCGATGCCAATGTCCTAGACAAGGTCTTACACGA
87061313 TAACACATAT
Statistics
Matches: 64, Mismatches: 11, Indels: 3
0.82 0.14 0.04
Matches are distributed among these distances:
42 28 0.44
43 8 0.12
44 28 0.44
ACGTcount: A:0.33, C:0.27, G:0.17, T:0.24
Consensus pattern (44 bp):
TCGATGCCAATGTCCTAGACAAGGTCTTACACGAAAATCACAAA
Found at i:87063324 original size:42 final size:42
Alignment explanation
Indices: 87063200--87063332 Score: 117
Period size: 42 Copynumber: 3.1 Consensus size: 42
87063190 TAAGATTCCA
* * * * *
87063200 ATGCCATATCCCAGATATGGTCGTACATGAGATCACATATCG
1 ATGCCATGTCCCAGACATGGTCTTACACGAAATCACATATCG
* *** *
87063242 ATGTCGATAG-CCCAG-CTATGGTCTTACACGATGCCGCATATCG
1 ATG-CCAT-GTCCCAGAC-ATGGTCTTACACGAAATCACATATCG
* *
87063285 ATGCCATGTCCCAGACATGGTCTTACACCAAATCACATATAG
1 ATGCCATGTCCCAGACATGGTCTTACACGAAATCACATATCG
87063327 ATGCCA
1 ATGCCA
87063333 ATGCCTTATC
Statistics
Matches: 70, Mismatches: 16, Indels: 10
0.73 0.17 0.10
Matches are distributed among these distances:
41 1 0.01
42 37 0.53
43 32 0.46
ACGTcount: A:0.29, C:0.27, G:0.19, T:0.25
Consensus pattern (42 bp):
ATGCCATGTCCCAGACATGGTCTTACACGAAATCACATATCG
Found at i:87063408 original size:48 final size:48
Alignment explanation
Indices: 87063285--87063417 Score: 178
Period size: 48 Copynumber: 2.8 Consensus size: 48
87063275 CCGCATATCG
****
87063285 ATGCCATGTCCCAGACATGGTCTTACACCAAATCACATATAGATGCCA
1 ATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATAGATGCCA
* * * *
87063333 ATGCCTTATCCCAGATATCGTCTTACATGGGATCACATATCA-ATGCCA
1 ATGCCATGTCCCAGACATGGTCTTACATGGGATCACATAT-AGATGCCA
87063381 ATGCCATGTCCCAGACATGGTCTTACATGGGATCACA
1 ATGCCATGTCCCAGACATGGTCTTACATGGGATCACA
87063418 CATAACCCTA
Statistics
Matches: 72, Mismatches: 12, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
48 71 0.99
49 1 0.01
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.26
Consensus pattern (48 bp):
ATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATAGATGCCA
Found at i:87070943 original size:48 final size:48
Alignment explanation
Indices: 87070891--87070992 Score: 150
Period size: 48 Copynumber: 2.1 Consensus size: 48
87070881 CTTATACAAA
* *
87070891 ATCACATATAGATGCCAATACCTTATCCCAGATATGGTCTTACATGGG
1 ATCACATATAGATGCCAATACCATATCCCAGACATGGTCTTACATGGG
* * * *
87070939 ATCACATATCGATGCCAATTCCATGTCCCATACATGGTCTTACATGGG
1 ATCACATATAGATGCCAATACCATATCCCAGACATGGTCTTACATGGG
87070987 ATCACA
1 ATCACA
87070993 CATAACCTTA
Statistics
Matches: 48, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
48 48 1.00
ACGTcount: A:0.30, C:0.25, G:0.16, T:0.28
Consensus pattern (48 bp):
ATCACATATAGATGCCAATACCATATCCCAGACATGGTCTTACATGGG
Found at i:87085508 original size:21 final size:20
Alignment explanation
Indices: 87085479--87085517 Score: 51
Period size: 21 Copynumber: 1.9 Consensus size: 20
87085469 TCGAGTTGGT
87085479 CACACGGGCATGTTGCCCTTC
1 CACACGGGCATG-TGCCCTTC
* *
87085500 CACATGGGCGTGTGCCCT
1 CACACGGGCATGTGCCCT
87085518 ATTTTAAGGA
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 6 0.38
21 10 0.62
ACGTcount: A:0.13, C:0.36, G:0.28, T:0.23
Consensus pattern (20 bp):
CACACGGGCATGTGCCCTTC
Found at i:87089871 original size:12 final size:12
Alignment explanation
Indices: 87089854--87089882 Score: 58
Period size: 12 Copynumber: 2.4 Consensus size: 12
87089844 AAGGCGCATA
87089854 ATGGATGTGACG
1 ATGGATGTGACG
87089866 ATGGATGTGACG
1 ATGGATGTGACG
87089878 ATGGA
1 ATGGA
87089883 GCTATGGAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.28, C:0.07, G:0.41, T:0.24
Consensus pattern (12 bp):
ATGGATGTGACG
Found at i:87096388 original size:29 final size:29
Alignment explanation
Indices: 87096354--87096427 Score: 96
Period size: 29 Copynumber: 2.6 Consensus size: 29
87096344 TAATCAACCG
*
87096354 CGCACACTTAGTGCCATGTACTTT-AAACT
1 CGCACACTTAGTGCCATGCA-TTTCAAACT
**
87096383 CGCACACTTAGTGCCATGCATTTCAAGTT
1 CGCACACTTAGTGCCATGCATTTCAAACT
*
87096412 CGCACACCTAGTGCCA
1 CGCACACTTAGTGCCA
87096428 ATCTCACAAC
Statistics
Matches: 40, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
28 3 0.08
29 37 0.93
ACGTcount: A:0.26, C:0.31, G:0.16, T:0.27
Consensus pattern (29 bp):
CGCACACTTAGTGCCATGCATTTCAAACT
Found at i:87103418 original size:48 final size:48
Alignment explanation
Indices: 87103365--87103536 Score: 283
Period size: 48 Copynumber: 3.6 Consensus size: 48
87103355 ATGAGATTTC
*
87103365 GTGTAAGACCATGTCTGGGACATGGCATCGATGATGATATATGTGTCT
1 GTGTAAGACCATGTCTGGGACATGGCATCGATGATGATATATGTGCCT
* *
87103413 GTGTAAGACCATGCCTAGGACATGGCATCGATGATGATATATGTGCCT
1 GTGTAAGACCATGTCTGGGACATGGCATCGATGATGATATATGTGCCT
**
87103461 GTGTAAGACCATGTCTGGGACATGGCATCGGCGATGATATATGTGCCAT
1 GTGTAAGACCATGTCTGGGACATGGCATCGATGATGATATATGTGCC-T
87103510 -TGTAAGACCATGTCTGGGACATGGCAT
1 GTGTAAGACCATGTCTGGGACATGGCAT
87103537 TGGCGATGTT
Statistics
Matches: 116, Mismatches: 7, Indels: 2
0.93 0.06 0.02
Matches are distributed among these distances:
48 115 0.99
49 1 0.01
ACGTcount: A:0.26, C:0.17, G:0.29, T:0.28
Consensus pattern (48 bp):
GTGTAAGACCATGTCTGGGACATGGCATCGATGATGATATATGTGCCT
Found at i:87103542 original size:48 final size:48
Alignment explanation
Indices: 87103365--87103584 Score: 275
Period size: 48 Copynumber: 4.6 Consensus size: 48
87103355 ATGAGATTTC
** *
87103365 GTGTAAGACCATGTCTGGGACATGGCATCGATGATGATATATGTGTCT
1 GTGTAAGACCATGTCTGGGACATGGCATCGGCGATGATATATGTGCCT
* * **
87103413 GTGTAAGACCATGCCTAGGACATGGCATCGATGATGATATATGTGCCT
1 GTGTAAGACCATGTCTGGGACATGGCATCGGCGATGATATATGTGCCT
87103461 GTGTAAGACCATGTCTGGGACATGGCATCGGCGATGATATATGTGCCAT
1 GTGTAAGACCATGTCTGGGACATGGCATCGGCGATGATATATGTGCC-T
* **
87103510 -TGTAAGACCATGTCTGGGACATGGCATTGGCGATG-T-TATGTGGATT
1 GTGTAAGACCATGTCTGGGACATGGCATCGGCGATGATATATGT-GCCT
* * *
87103556 CATGTAAGACCATGCCTAGGACATGGCAT
1 -GTGTAAGACCATGTCTGGGACATGGCAT
87103585 TGGTACTTTA
Statistics
Matches: 156, Mismatches: 12, Indels: 8
0.89 0.07 0.05
Matches are distributed among these distances:
46 6 0.04
47 2 0.01
48 147 0.94
49 1 0.01
ACGTcount: A:0.25, C:0.17, G:0.29, T:0.28
Consensus pattern (48 bp):
GTGTAAGACCATGTCTGGGACATGGCATCGGCGATGATATATGTGCCT
Found at i:87107742 original size:40 final size:41
Alignment explanation
Indices: 87107653--87107764 Score: 129
Period size: 40 Copynumber: 2.8 Consensus size: 41
87107643 TATAACCACA
* * * * *
87107653 AGCACAATTTCCTTCGGGTCTTAACCCGGGT-ATAGCAACT
1 AGCACAAATGCCTTCGGGTCTTAGCCCGGATAAAAGCAACT
* *
87107693 CGCACAAATGCCTTCGGGTCTTAGCCCGGATAAAATC-ACT
1 AGCACAAATGCCTTCGGGTCTTAGCCCGGATAAAAGCAACT
* *
87107733 AGCATAAATGCCTTCGGGACTTAGCCCGGATA
1 AGCACAAATGCCTTCGGGTCTTAGCCCGGATA
87107765 TCATTCAAAT
Statistics
Matches: 61, Mismatches: 10, Indels: 2
0.84 0.14 0.03
Matches are distributed among these distances:
40 58 0.95
41 3 0.05
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (41 bp):
AGCACAAATGCCTTCGGGTCTTAGCCCGGATAAAAGCAACT
Found at i:87110497 original size:12 final size:11
Alignment explanation
Indices: 87110477--87110511 Score: 54
Period size: 12 Copynumber: 3.2 Consensus size: 11
87110467 ACATGTTGAA
87110477 TTTTAATTAAT
1 TTTTAATTAAT
87110488 TTTATAATTAAT
1 TTT-TAATTAAT
87110500 TTTT-ATTAAT
1 TTTTAATTAAT
87110510 TT
1 TT
87110512 GGTTTTTTTC
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
10 8 0.35
11 4 0.17
12 11 0.48
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (11 bp):
TTTTAATTAAT
Found at i:87113125 original size:40 final size:39
Alignment explanation
Indices: 87113081--87113263 Score: 194
Period size: 40 Copynumber: 4.6 Consensus size: 39
87113071 GCTACTCGTT
*
87113081 CAAATGCCTTCGAGACATAGCCCGGTTATAGTAACTTGCA
1 CAAATGCCTTCG-GACTTAGCCCGGTTATAGTAACTTGCA
* *
87113121 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCA
1 CAAATGCCTTC-GGACTTAGCCCGG-TTATAGTAACTTGCA
* *
87113161 CAAATGCCTTCGGACTTAGCACGG-AATTAGTAACTCT-CA
1 CAAATGCCTTCGGACTTAGCCCGGTTA-TAGTAACT-TGCA
* * *
87113200 CAAATGCCTTCGGATCTTAGTCCGGATATAGTCACTTAGCA
1 CAAATGCCTTCGGA-CTTAGCCCGGTTATAGTAACTT-GCA
87113241 CAAA-GCCTTCGGGACTTAGCCCG
1 CAAATGCCTTC-GGACTTAGCCCG
87113264 AACATCATTC
Statistics
Matches: 121, Mismatches: 12, Indels: 20
0.79 0.08 0.13
Matches are distributed among these distances:
39 36 0.30
40 72 0.60
41 13 0.11
ACGTcount: A:0.28, C:0.27, G:0.20, T:0.25
Consensus pattern (39 bp):
CAAATGCCTTCGGACTTAGCCCGGTTATAGTAACTTGCA
Found at i:87113202 original size:79 final size:80
Alignment explanation
Indices: 87113081--87113260 Score: 208
Period size: 79 Copynumber: 2.2 Consensus size: 80
87113071 GCTACTCGTT
* * *
87113081 CAAATGCCTTCGAGACATAGCCCGGTTATAGTAACTTGCACAAATGCCTTCGGGA-CTTAACCCG
1 CAAATGCCTTCG-GACTTAGCACGGATATAGTAACTTGCACAAATGCCTTC-GGATCTTAACCCG
* *
87113145 GATTTAGTAAC-TCGCA
64 GATATAGTAACTTAGCA
**
87113161 CAAATGCCTTCGGACTTAGCACGGA-ATTAGTAACTCT-CACAAATGCCTTCGGATCTTAGTCCG
1 CAAATGCCTTCGGACTTAGCACGGATA-TAGTAACT-TGCACAAATGCCTTCGGATCTTAACCCG
*
87113224 GATATAGTCACTTAGCA
64 GATATAGTAACTTAGCA
87113241 CAAA-GCCTTCGGGACTTAGC
1 CAAATGCCTTC-GGACTTAGC
87113261 CCGAACATCA
Statistics
Matches: 87, Mismatches: 8, Indels: 10
0.83 0.08 0.10
Matches are distributed among these distances:
78 4 0.05
79 53 0.61
80 30 0.34
ACGTcount: A:0.28, C:0.26, G:0.20, T:0.26
Consensus pattern (80 bp):
CAAATGCCTTCGGACTTAGCACGGATATAGTAACTTGCACAAATGCCTTCGGATCTTAACCCGGA
TATAGTAACTTAGCA
Found at i:87120058 original size:16 final size:15
Alignment explanation
Indices: 87120025--87120066 Score: 57
Period size: 16 Copynumber: 2.7 Consensus size: 15
87120015 AGATGATAAT
87120025 TATTAATATATAATTA
1 TATTAAT-TATAATTA
*
87120041 TATTCATTATAATATA
1 TATTAATTATAAT-TA
87120057 TATTAATTAT
1 TATTAATTAT
87120067 TATCAACTTT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
15 6 0.26
16 17 0.74
ACGTcount: A:0.45, C:0.02, G:0.00, T:0.52
Consensus pattern (15 bp):
TATTAATTATAATTA
Found at i:87125594 original size:13 final size:13
Alignment explanation
Indices: 87125576--87125600 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
87125566 CCCAGGGGGT
87125576 ACATGACCGTGTA
1 ACATGACCGTGTA
87125589 ACATGACCGTGT
1 ACATGACCGTGT
87125601 GTCGCACACG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.28, C:0.24, G:0.24, T:0.24
Consensus pattern (13 bp):
ACATGACCGTGTA
Found at i:87126669 original size:43 final size:42
Alignment explanation
Indices: 87126620--87126766 Score: 172
Period size: 43 Copynumber: 3.4 Consensus size: 42
87126610 TGTCGCAAAT
*
87126620 ATGGTCTTACATGTAAATACGT-AT-CGATGCCATTGTCCCAGAC
1 ATGGTCTTACATG-AAAT-C-TAATACGATGCCAATGTCCCAGAC
* *
87126663 ATGGTCTTACACGAAATCATAATACGATGCCAATGTCCCAAAC
1 ATGGTCTTACATGAAATC-TAATACGATGCCAATGTCCCAGAC
* *
87126706 ATGGTCTTACATGCAATCTCAATACAATGCCAATGTCCCAGAC
1 ATGGTCTTACATGAAATCT-AATACGATGCCAATGTCCCAGAC
* *
87126749 ATGGTCTTAGATGTAATC
1 ATGGTCTTACATGAAATC
87126767 ACATCTCGAT
Statistics
Matches: 91, Mismatches: 10, Indels: 6
0.85 0.09 0.06
Matches are distributed among these distances:
41 2 0.02
42 7 0.08
43 82 0.90
ACGTcount: A:0.32, C:0.24, G:0.16, T:0.28
Consensus pattern (42 bp):
ATGGTCTTACATGAAATCTAATACGATGCCAATGTCCCAGAC
Found at i:87133638 original size:48 final size:48
Alignment explanation
Indices: 87133581--87133857 Score: 305
Period size: 48 Copynumber: 5.8 Consensus size: 48
87133571 GTAACAAAGT
* * * *
87133581 CGATTCCATGTTCCAAACATGGTCTTACACTGGCTCATATATTGAGGC
1 CGATGCCATGTTCCAGACATGGTCTTACACTAGCTCATATATTAAGGC
* * * *
87133629 CGATGCCATGTCCCAGACATGGTCTTACACTAGGTCTCATA-A-CAATGT
1 CGATGCCATGTTCCAGACATGGTCTTACACTA-G-CTCATATATTAAGGC
* * * * *
87133677 CGATGCCATGTTCCAAACATGGTCTTACACTGGCTCACATATTGAGAC
1 CGATGCCATGTTCCAGACATGGTCTTACACTAGCTCATATATTAAGGC
* * *
87133725 CGATGCCATGTCCCAGACATGGTCTTACACTAGCTC-TCATGTTAAGGT
1 CGATGCCATGTTCCAGACATGGTCTTACACTAGCTCAT-ATATTAAGGC
*
87133773 GGATGCCATG-TCCTAGACATGGTCTTACACTAGCTC-TCATATTAAGGC
1 CGATGCCATGTTCC-AGACATGGTCTTACACTAGCTCAT-ATATTAAGGC
87133821 CGATGCCAT-TTCCCAGACATGGTCTTACACTAGCTCA
1 CGATGCCATGTT-CCAGACATGGTCTTACACTAGCTCA
87133858 CATGTACCCT
Statistics
Matches: 190, Mismatches: 30, Indels: 17
0.80 0.13 0.07
Matches are distributed among these distances:
46 5 0.03
47 4 0.02
48 171 0.90
49 4 0.02
50 6 0.03
ACGTcount: A:0.25, C:0.27, G:0.19, T:0.29
Consensus pattern (48 bp):
CGATGCCATGTTCCAGACATGGTCTTACACTAGCTCATATATTAAGGC
Found at i:87133692 original size:96 final size:96
Alignment explanation
Indices: 87133540--87133856 Score: 440
Period size: 96 Copynumber: 3.3 Consensus size: 96
87133530 TGCTGATACT
* * * * *
87133540 ATGTCCTAAACATGATCTTACACTAGCTCTCGTAACAAAGTCGATTCCATGTTCCAAACATGGTC
1 ATGTCCCAGACATGGTCTTACACTAGCTCTCATAACAAAGTCGATGCCATGTTCCAAACATGGTC
87133605 TTACACTGGCTCATATATTGAGGCCGATGCC
66 TTACACTGGCTCATATATTGAGGCCGATGCC
* *
87133636 ATGTCCCAGACATGGTCTTACACTAGGTCTCATAACAATGTCGATGCCATGTTCCAAACATGGTC
1 ATGTCCCAGACATGGTCTTACACTAGCTCTCATAACAAAGTCGATGCCATGTTCCAAACATGGTC
* *
87133701 TTACACTGGCTCACATATTGAGACCGATGCC
66 TTACACTGGCTCATATATTGAGGCCGATGCC
*** * * *
87133732 ATGTCCCAGACATGGTCTTACACTAGCTCTCATGTTAAGGTGGATGCCATG-TCCTAGACATGGT
1 ATGTCCCAGACATGGTCTTACACTAGCTCTCATAACAAAGTCGATGCCATGTTCC-AAACATGGT
* *
87133796 CTTACACTAGCTC-TCATATTAAGGCCGATGCC
65 CTTACACTGGCTCAT-ATATTGAGGCCGATGCC
*
87133828 ATTTCCCAGACATGGTCTTACACTAGCTC
1 ATGTCCCAGACATGGTCTTACACTAGCTC
87133857 ACATGTACCC
Statistics
Matches: 198, Mismatches: 21, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
95 3 0.02
96 195 0.98
ACGTcount: A:0.26, C:0.27, G:0.18, T:0.29
Consensus pattern (96 bp):
ATGTCCCAGACATGGTCTTACACTAGCTCTCATAACAAAGTCGATGCCATGTTCCAAACATGGTC
TTACACTGGCTCATATATTGAGGCCGATGCC
Found at i:87133811 original size:144 final size:144
Alignment explanation
Indices: 87133581--87133860 Score: 384
Period size: 144 Copynumber: 1.9 Consensus size: 144
87133571 GTAACAAAGT
* * * *
87133581 CGATTCCATGTTCCAAACATGGTCTTACACTGGCTCATATATTGAGGCCGATGCCATGTCCCAGA
1 CGATGCCATGTCCCAAACATGGTCTTACACTAGCTCATATATTAAGGCCGATGCCATGTCCCAGA
* * * *
87133646 CATGGTCTTACACTAGGTCTCATAACAATGTCGATGCCATGTT-CCAAACATGGTCTTACACTGG
66 CATGGTCTTACACTAGCTCTCATAACAAGGCCGATGCCAT-TTCCCAAACATGGTCTTACACTAG
87133710 CTCACATATTGAGAC
130 CTCACATATTGAGAC
* * ** *
87133725 CGATGCCATGTCCCAGACATGGTCTTACACTAGCTC-TCATGTTAAGGTGGATGCCATGTCCTAG
1 CGATGCCATGTCCCAAACATGGTCTTACACTAGCTCAT-ATATTAAGGCCGATGCCATGTCCCAG
** *
87133789 ACATGGTCTTACACTAGCTCTCATATTAAGGCCGATGCCATTTCCCAGACATGGTCTTACACTAG
65 ACATGGTCTTACACTAGCTCTCATAACAAGGCCGATGCCATTTCCCAAACATGGTCTTACACTAG
87133854 CTCACAT
130 CTCACAT
87133861 GTACCCTAAC
Statistics
Matches: 118, Mismatches: 16, Indels: 4
0.86 0.12 0.03
Matches are distributed among these distances:
143 3 0.03
144 115 0.97
ACGTcount: A:0.25, C:0.27, G:0.19, T:0.29
Consensus pattern (144 bp):
CGATGCCATGTCCCAAACATGGTCTTACACTAGCTCATATATTAAGGCCGATGCCATGTCCCAGA
CATGGTCTTACACTAGCTCTCATAACAAGGCCGATGCCATTTCCCAAACATGGTCTTACACTAGC
TCACATATTGAGAC
Found at i:87137197 original size:43 final size:43
Alignment explanation
Indices: 87137134--87137320 Score: 221
Period size: 43 Copynumber: 4.3 Consensus size: 43
87137124 TTTGACATGG
* ***
87137134 TCTTTAGCGGCGTTTGTGGGGAAAGCGTTGCTAAAGGTAATGT
1 TCTTTAGCGGCGTTTATGGGGAAAGCACCGCTAAAGGTAATGT
** *
87137177 TCTTTAGCAACGTTTATGGGGAAAGCACCGCTAAAGGTCATGT
1 TCTTTAGCGGCGTTTATGGGGAAAGCACCGCTAAAGGTAATGT
* * * *
87137220 TCTTTAACGGCGTTTATGGGGAAAACACCACTAAAGGTCATGT
1 TCTTTAGCGGCGTTTATGGGGAAAGCACCGCTAAAGGTAATGT
* * * *
87137263 TCTTTAGTGGCGTTTGTGGGAAAAGCACCGCTAAAGGTCATGT
1 TCTTTAGCGGCGTTTATGGGGAAAGCACCGCTAAAGGTAATGT
* *
87137306 TCTATAGTGGCGTTT
1 TCTTTAGCGGCGTTT
87137321 TTCCTCATAA
Statistics
Matches: 125, Mismatches: 19, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
43 125 1.00
ACGTcount: A:0.25, C:0.16, G:0.28, T:0.31
Consensus pattern (43 bp):
TCTTTAGCGGCGTTTATGGGGAAAGCACCGCTAAAGGTAATGT
Found at i:87141638 original size:24 final size:24
Alignment explanation
Indices: 87141575--87141626 Score: 77
Period size: 24 Copynumber: 2.2 Consensus size: 24
87141565 TTTCTAGAAG
* * *
87141575 ATTTAGTATTTATGAGTATAATAT
1 ATTTAGCATTTATTAGCATAATAT
87141599 ATTTAGCATTTATTAGCATAATAT
1 ATTTAGCATTTATTAGCATAATAT
87141623 ATTT
1 ATTT
87141627 GACTTTGATT
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.37, C:0.04, G:0.10, T:0.50
Consensus pattern (24 bp):
ATTTAGCATTTATTAGCATAATAT
Found at i:87142142 original size:2 final size:2
Alignment explanation
Indices: 87142135--87142164 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
87142125 TTTCAAATTC
87142135 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
87142165 TTATCCTTCA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:87142349 original size:29 final size:29
Alignment explanation
Indices: 87142316--87142375 Score: 93
Period size: 29 Copynumber: 2.1 Consensus size: 29
87142306 AATAGGCAGT
**
87142316 AAAGAATGTTCTGAGCTTTCAACCAACAC
1 AAAGAATGTTCCAAGCTTTCAACCAACAC
*
87142345 AAAGAATGTTCCAAGCTTTCAATCAACAC
1 AAAGAATGTTCCAAGCTTTCAACCAACAC
87142374 AA
1 AA
87142376 CCTTTTCCAC
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
29 28 1.00
ACGTcount: A:0.42, C:0.23, G:0.12, T:0.23
Consensus pattern (29 bp):
AAAGAATGTTCCAAGCTTTCAACCAACAC
Found at i:87142446 original size:14 final size:14
Alignment explanation
Indices: 87142427--87142457 Score: 62
Period size: 14 Copynumber: 2.2 Consensus size: 14
87142417 GGCTTTAATT
87142427 CACGAACCAGACAA
1 CACGAACCAGACAA
87142441 CACGAACCAGACAA
1 CACGAACCAGACAA
87142455 CAC
1 CAC
87142458 TTATAAAAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.48, C:0.39, G:0.13, T:0.00
Consensus pattern (14 bp):
CACGAACCAGACAA
Found at i:87144254 original size:18 final size:18
Alignment explanation
Indices: 87144191--87144247 Score: 55
Period size: 17 Copynumber: 3.2 Consensus size: 18
87144181 CTTTAGAATT
* *
87144191 TTTTATAATTTT-TATAA
1 TTTTAAAATTTTATAAAA
**
87144208 TTTTAAAA-AATATAAAA
1 TTTTAAAATTTTATAAAA
87144225 TTTTAAAATTTTATAAATA
1 TTTTAAAATTTTATAAA-A
87144244 TTTT
1 TTTT
87144248 TAATTTTTGA
Statistics
Matches: 31, Mismatches: 6, Indels: 4
0.76 0.15 0.10
Matches are distributed among these distances:
16 1 0.03
17 19 0.61
18 6 0.19
19 5 0.16
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (18 bp):
TTTTAAAATTTTATAAAA
Found at i:87144255 original size:19 final size:19
Alignment explanation
Indices: 87144218--87144273 Score: 53
Period size: 19 Copynumber: 2.9 Consensus size: 19
87144208 TTTTAAAAAA
*
87144218 TATAAA-ATTTTAAAATTT
1 TATAAATATTTTAAATTTT
*
87144236 TATAAATATTTTTAATTTT
1 TATAAATATTTTAAATTTT
*
87144255 TGA-AAATTATTTTGAATTT
1 T-ATAAA-TATTTTAAATTT
87144274 ATTTTTGTAA
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
18 6 0.19
19 14 0.44
20 12 0.38
ACGTcount: A:0.41, C:0.00, G:0.04, T:0.55
Consensus pattern (19 bp):
TATAAATATTTTAAATTTT
Found at i:87145993 original size:146 final size:146
Alignment explanation
Indices: 87145830--87146131 Score: 577
Period size: 146 Copynumber: 2.1 Consensus size: 146
87145820 ATAATTTAAA
* *
87145830 TAATATTATTTATGTATTATTGAAAAATAATTAATATTGATATTTTAATAATAAATAGTTATAAC
1 TAAT-TTAGTTATGTATTATTGAAAAATAATTAATATTAATATTTTAATAATAAATAGTTATAAC
87145895 AATTATAAATATATTAATAATAAACGTATTGTAGTATAATGGTTAAAATATATCATAAGTCTATG
65 AATTATAAATATATTAATAATAAACGTATTGTAGTATAATGGTTAAAATATATCATAAGTCTATG
87145960 TACTATTCACAAATTTG
130 TACTATTCACAAATTTG
87145977 TAATTTAGTTATGTATTATTGAAAAATAATTAATATTAATATTTTAATAATAAATAGTTATAACA
1 TAATTTAGTTATGTATTATTGAAAAATAATTAATATTAATATTTTAATAATAAATAGTTATAACA
87146042 ATTATAAATATATTAATAATAAACGTATTGTAGTATAATGGTTAAAATATATCATAAGTCTATGT
66 ATTATAAATATATTAATAATAAACGTATTGTAGTATAATGGTTAAAATATATCATAAGTCTATGT
87146107 ACTATTCACAAATTTG
131 ACTATTCACAAATTTG
87146123 TAATTTAGT
1 TAATTTAGT
87146132 CCCTGTACTT
Statistics
Matches: 153, Mismatches: 2, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
146 149 0.97
147 4 0.03
ACGTcount: A:0.45, C:0.05, G:0.08, T:0.42
Consensus pattern (146 bp):
TAATTTAGTTATGTATTATTGAAAAATAATTAATATTAATATTTTAATAATAAATAGTTATAACA
ATTATAAATATATTAATAATAAACGTATTGTAGTATAATGGTTAAAATATATCATAAGTCTATGT
ACTATTCACAAATTTG
Found at i:87146946 original size:15 final size:15
Alignment explanation
Indices: 87146926--87146964 Score: 53
Period size: 14 Copynumber: 2.7 Consensus size: 15
87146916 TTTAAAAAAT
87146926 AAATCATTTTTTCAA
1 AAATCATTTTTTCAA
*
87146941 AAATCA-TTTTTCAG
1 AAATCATTTTTTCAA
*
87146955 AAACCATTTT
1 AAATCATTTT
87146965 CAATAAAATA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
14 12 0.57
15 9 0.43
ACGTcount: A:0.38, C:0.15, G:0.03, T:0.44
Consensus pattern (15 bp):
AAATCATTTTTTCAA
Found at i:87160586 original size:15 final size:16
Alignment explanation
Indices: 87160550--87160586 Score: 51
Period size: 15 Copynumber: 2.4 Consensus size: 16
87160540 AATATTTATA
87160550 TTTT-AATTTAGTCAT
1 TTTTAAATTTAGTCAT
*
87160565 TTTTAAATTTTGT-AT
1 TTTTAAATTTAGTCAT
87160580 TTTTAAA
1 TTTTAAA
87160587 ATATGAAAAT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
15 13 0.65
16 7 0.35
ACGTcount: A:0.30, C:0.03, G:0.05, T:0.62
Consensus pattern (16 bp):
TTTTAAATTTAGTCAT
Found at i:87162268 original size:27 final size:27
Alignment explanation
Indices: 87162238--87162414 Score: 196
Period size: 27 Copynumber: 6.6 Consensus size: 27
87162228 ATATTGAGTC
* * *
87162238 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAACT
* *
87162265 CGCACACTTAGTGCTACGTAATCAA-T
1 CGCACACTTAGTGCTACATAGTCAACT
87162291 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTC-AACT
** * *
87162319 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAACT
* **
87162346 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAACT
* *
87162373 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAACT
87162400 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
87162415 GTACAATTTA
Statistics
Matches: 129, Mismatches: 17, Indels: 8
0.84 0.11 0.05
Matches are distributed among these distances:
26 22 0.17
27 85 0.66
28 22 0.17
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAACT
Found at i:87162403 original size:81 final size:81
Alignment explanation
Indices: 87162259--87162413 Score: 233
Period size: 81 Copynumber: 1.9 Consensus size: 81
87162249 TGCTATATAA
* *
87162259 TCAACTCGCACACTTAGTGCTACGTAATCAATCGCACACTTAGTGCTACATAGTCAAACTCGCAC
1 TCAACTCGCACACTTAGTGCTACATAATCAATCGCACACTTAGTGCAACATAGTCAAACTCGCAC
87162324 ACTTAGTGCCGCATGG
66 ACTTAGTGCCGCATGG
* * *
87162340 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAA-TCGC
1 TCAACTCGCACACTTAGTGCTA-CATAATCA-ATCGCACACTTAGTGCAACATAGTCAAACTCGC
87162403 ACACTTAGTGC
64 ACACTTAGTGC
87162414 TGTACAATTT
Statistics
Matches: 67, Mismatches: 5, Indels: 4
0.88 0.07 0.05
Matches are distributed among these distances:
80 1 0.01
81 40 0.60
82 26 0.39
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAATCGCACACTTAGTGCAACATAGTCAAACTCGCAC
ACTTAGTGCCGCATGG
Found at i:87169933 original size:26 final size:27
Alignment explanation
Indices: 87169897--87169949 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
87169887 TGTCAGCTAG
* *
87169897 TGAAATTTTAA-TGTTCGAATGTATGC
1 TGAAATTTTAAGTGTCCGAATGCATGC
*
87169923 TGAATTTTTAAGTGTCCGAATGCATGC
1 TGAAATTTTAAGTGTCCGAATGCATGC
87169950 CAGAACTCAT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
26 10 0.43
27 13 0.57
ACGTcount: A:0.28, C:0.11, G:0.21, T:0.40
Consensus pattern (27 bp):
TGAAATTTTAAGTGTCCGAATGCATGC
Found at i:87171267 original size:28 final size:28
Alignment explanation
Indices: 87171236--87171290 Score: 110
Period size: 28 Copynumber: 2.0 Consensus size: 28
87171226 GATTCCTTTT
87171236 TATATGCCTAAGAGTTAAATTAATATGA
1 TATATGCCTAAGAGTTAAATTAATATGA
87171264 TATATGCCTAAGAGTTAAATTAATATG
1 TATATGCCTAAGAGTTAAATTAATATG
87171291 GCAAAGAGAA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 27 1.00
ACGTcount: A:0.42, C:0.07, G:0.15, T:0.36
Consensus pattern (28 bp):
TATATGCCTAAGAGTTAAATTAATATGA
Found at i:87171747 original size:45 final size:45
Alignment explanation
Indices: 87171678--87171922 Score: 291
Period size: 45 Copynumber: 5.5 Consensus size: 45
87171668 AAAAATGATA
* * * *
87171678 TCGGG-CTTCGGGGCTAGCAGGCTATGATGGCAGTGAAATACTAT
1 TCGGGCCTTCGAGCCTAGCAGGCTATGATGCCGGTGAAATACTAT
* *
87171722 TCGGGCCTTCGAGCCCAGCAAGCTATGATGCCGGTGAAATACTAT
1 TCGGGCCTTCGAGCCTAGCAGGCTATGATGCCGGTGAAATACTAT
* * * *
87171767 TCGCGCCTTTGAGCCTAGCAGGCTATGATGCCGGTGAGATATTAT
1 TCGGGCCTTCGAGCCTAGCAGGCTATGATGCCGGTGAAATACTAT
* * * *
87171812 TCGGGCCTTTGAGCCTAGTAGGCTATAATGCCGGTGAGATACTAT
1 TCGGGCCTTCGAGCCTAGCAGGCTATGATGCCGGTGAAATACTAT
* * *
87171857 TCGGGCTTTCGAGCCTAGCAGGCTATAATGTCGGTGAAATGA-TA-
1 TCGGGCCTTCGAGCCTAGCAGGCTATGATGCCGGTGAAAT-ACTAT
*
87171901 TCGGGCC-TCGAACCTAGCAGGC
1 TCGGGCCTTCGAGCCTAGCAGGC
87171923 GAAATGCCAG
Statistics
Matches: 176, Mismatches: 23, Indels: 5
0.86 0.11 0.02
Matches are distributed among these distances:
43 14 0.08
44 11 0.06
45 150 0.85
46 1 0.01
ACGTcount: A:0.22, C:0.22, G:0.30, T:0.25
Consensus pattern (45 bp):
TCGGGCCTTCGAGCCTAGCAGGCTATGATGCCGGTGAAATACTAT
Found at i:87173770 original size:51 final size:51
Alignment explanation
Indices: 87173705--87173803 Score: 180
Period size: 51 Copynumber: 1.9 Consensus size: 51
87173695 TGATTTCAGT
*
87173705 GTTGAGGCCTTGGGACATGTTGGATAGATAAGGAAATGTGAGCTAAGCAGC
1 GTTGAGGCCCTGGGACATGTTGGATAGATAAGGAAATGTGAGCTAAGCAGC
*
87173756 GTTGAGGCCCTGGGACATGTTGGATAGATAAGGGAATGTGAGCTAAGC
1 GTTGAGGCCCTGGGACATGTTGGATAGATAAGGAAATGTGAGCTAAGC
87173804 CTCCATTCAA
Statistics
Matches: 46, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
51 46 1.00
ACGTcount: A:0.28, C:0.12, G:0.36, T:0.23
Consensus pattern (51 bp):
GTTGAGGCCCTGGGACATGTTGGATAGATAAGGAAATGTGAGCTAAGCAGC
Found at i:87177118 original size:46 final size:46
Alignment explanation
Indices: 87177058--87177233 Score: 182
Period size: 46 Copynumber: 3.8 Consensus size: 46
87177048 TATTTGGGCA
87177058 TCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
87177104 TCTGAACTCGTTGAGTTGAGTCCGAGTTCA---A-GAGATG-TAACTAGG
1 TCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATG-GATGCGAA-T--G
* *
87177149 CATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 --TCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * *
87177197 CCCGAGCTCATTGAGTTGAGTCTGAGTTCGCTTATGG
1 TCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGG
87177234 GCGGGTTACA
Statistics
Matches: 109, Mismatches: 10, Indels: 22
0.77 0.07 0.16
Matches are distributed among these distances:
42 3 0.03
43 6 0.06
45 1 0.01
46 61 0.56
47 28 0.26
48 1 0.01
50 6 0.06
51 3 0.03
ACGTcount: A:0.22, C:0.19, G:0.28, T:0.30
Consensus pattern (46 bp):
TCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:87177213 original size:93 final size:93
Alignment explanation
Indices: 87177054--87177225 Score: 281
Period size: 93 Copynumber: 1.8 Consensus size: 93
87177044 AGGATATTTG
* * *
87177054 GGCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCTGAACTCGTTGAG
1 GGCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCCCGAACTCATTGAG
87177119 TTGAGTCCGAGTTCAAGAGATGTAACTA
66 TTGAGTCCGAGTTCAAGAGATGTAACTA
* * *
87177147 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCCCGAGCTCATTGAG
1 GGCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCCCGAACTCATTGAG
*
87177212 TTGAGTCTGAGTTC
66 TTGAGTCCGAGTTC
87177226 GCTTATGGGC
Statistics
Matches: 72, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.23, C:0.20, G:0.28, T:0.29
Consensus pattern (93 bp):
GGCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCCCGAACTCATTGAG
TTGAGTCCGAGTTCAAGAGATGTAACTA
Found at i:87180822 original size:46 final size:46
Alignment explanation
Indices: 87180755--87180929 Score: 210
Period size: 46 Copynumber: 3.8 Consensus size: 46
87180745 AACTCGCCCC
* *
87180755 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGTGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGTTCGCATCCA
* * * * *
87180801 TAAGTGAACTCGGACTCAACTCAATGAGTTCGGATGCCTAG-TTACA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATG-TTCGCATCCA
* * **
87180847 TTTCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
1 --TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGTTCGCATCCA
87180894 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATG
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATG
87180930 CTCAACCATC
Statistics
Matches: 104, Mismatches: 20, Indels: 10
0.78 0.15 0.07
Matches are distributed among these distances:
45 2 0.02
46 67 0.64
47 33 0.32
48 2 0.02
ACGTcount: A:0.29, C:0.26, G:0.22, T:0.23
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGTTCGCATCCA
Found at i:87180867 original size:93 final size:93
Alignment explanation
Indices: 87180760--87180930 Score: 297
Period size: 93 Copynumber: 1.8 Consensus size: 93
87180750 GCCCCTAAGT
***
87180760 GAACTCGGACTCAACTCAACGAGCTCGGGTGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
87180825 TGAGTTCGGATGCCTAGTTACATTTCAC
66 CGAGTTCGGATGCCTAGTTACATTTCAC
*
87180853 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
87180918 CGAGTTCGGATGC
66 CGAGTTCGGATGC
87180931 TCAACCATCC
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.28, C:0.27, G:0.22, T:0.23
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATTTCAC
Found at i:87192993 original size:40 final size:40
Alignment explanation
Indices: 87192919--87193169 Score: 310
Period size: 40 Copynumber: 6.3 Consensus size: 40
87192909 TCTTCGAAAT
** * *
87192919 TTAG-CCGGATATAACCACTCGCAC-AAGGCCTTCGGGTC
1 TTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGTC
* * *
87192957 TTAGCCCGGATATGGTCACTAGCATAAATGCCTTCGGGAC
1 TTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGTC
* *
87192997 TTAGCCCGGATATAGTCGCTAGCACAAATGCCTTTGGGTC
1 TTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGTC
*
87193037 TTAGCCCGGATATAGTCGCTAGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGTC
* * * *
87193077 TTAGGCCGGATATAG-CGACTCGCACAAATGCCTTTGGATC
1 TTAGCCCGGATATAGTC-ACTAGCACAAATGCCTTCGGGTC
* * * *
87193117 TTAGTCCGGATATAGTCACTAGCATAAAAGCCTTCGGGAC
1 TTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGTC
87193157 TTAGCCCGGATAT
1 TTAGCCCGGATAT
87193170 CATTCGAATA
Statistics
Matches: 183, Mismatches: 26, Indels: 6
0.85 0.12 0.03
Matches are distributed among these distances:
38 4 0.02
39 16 0.09
40 162 0.89
41 1 0.01
ACGTcount: A:0.25, C:0.26, G:0.24, T:0.25
Consensus pattern (40 bp):
TTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGTC
Found at i:87193041 original size:80 final size:80
Alignment explanation
Indices: 87192919--87193169 Score: 346
Period size: 80 Copynumber: 3.2 Consensus size: 80
87192909 TCTTCGAAAT
* * * * * *
87192919 TTAG-CCGGATATAACCACTCGCAC-AAGGCCTTCGGGTCTTAGCCCGGATATGGTCACTAGCAT
1 TTAGCCCGGATATAGCGACTAGCACAAATGCCTTTGGGTCTTAGCCCGGATATAGTCACTAGCAT
87192982 AAATGCCTTCGGGAC
66 AAATGCCTTCGGGAC
*
87192997 TTAGCCCGGATATAGTCG-CTAGCACAAATGCCTTTGGGTCTTAGCCCGGATATAGTCGCTAGCA
1 TTAGCCCGGATATAG-CGACTAGCACAAATGCCTTTGGGTCTTAGCCCGGATATAGTCACTAGCA
* *
87193061 CAAATGCCTTCGGGTC
65 TAAATGCCTTCGGGAC
* * * *
87193077 TTAGGCCGGATATAGCGACTCGCACAAATGCCTTTGGATCTTAGTCCGGATATAGTCACTAGCAT
1 TTAGCCCGGATATAGCGACTAGCACAAATGCCTTTGGGTCTTAGCCCGGATATAGTCACTAGCAT
*
87193142 AAAAGCCTTCGGGAC
66 AAATGCCTTCGGGAC
87193157 TTAGCCCGGATAT
1 TTAGCCCGGATAT
87193170 CATTCGAATA
Statistics
Matches: 151, Mismatches: 18, Indels: 6
0.86 0.10 0.03
Matches are distributed among these distances:
78 4 0.03
79 17 0.11
80 130 0.86
ACGTcount: A:0.25, C:0.26, G:0.24, T:0.25
Consensus pattern (80 bp):
TTAGCCCGGATATAGCGACTAGCACAAATGCCTTTGGGTCTTAGCCCGGATATAGTCACTAGCAT
AAATGCCTTCGGGAC
Found at i:87198203 original size:39 final size:40
Alignment explanation
Indices: 87198126--87198272 Score: 111
Period size: 40 Copynumber: 3.7 Consensus size: 40
87198116 TAGCTCCTCG
* * *
87198126 TTCAAGTGCCTTCGGGACATAGCCCGG-TTATAGTAACTCA
1 TTCAA-TGCCTTCGGGACTTAACCCGGATTATAGAAACTCA
* *
87198166 TTCAATGCCTTCGGGACTTAACCCGGATTTTA-AAACTCG
1 TTCAATGCCTTCGGGACTTAACCCGGATTATAGAAACTCA
** * * * * *
87198205 GACGAATGCCTTTGGGACTTAACCCGGAAT-TAGTATCTCG
1 TTC-AATGCCTTCGGGACTTAACCCGGATTATAGAAACTCA
** *
87198245 CACAAAGGCCTTCGGGACTTAACCCGGA
1 TTC-AATGCCTTCGGGACTTAACCCGGA
87198273 ATTAATAACT
Statistics
Matches: 89, Mismatches: 15, Indels: 6
0.81 0.14 0.05
Matches are distributed among these distances:
39 27 0.30
40 62 0.70
ACGTcount: A:0.26, C:0.26, G:0.22, T:0.26
Consensus pattern (40 bp):
TTCAATGCCTTCGGGACTTAACCCGGATTATAGAAACTCA
Found at i:87198222 original size:40 final size:40
Alignment explanation
Indices: 87198169--87198352 Score: 162
Period size: 40 Copynumber: 4.6 Consensus size: 40
87198159 TAACTCATTC
* * *
87198169 AATGCCTTCGGGACTTAACCCGGATTTTA-AAACTCGGACG
1 AATGCCTTCGGGACTTAACCCGGA-ATTAGAAACTCGCACA
* * *
87198209 AATGCCTTTGGGACTTAACCCGGAATTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGAATTAGAAACTCGCACA
*
87198249 AAGGCCTTCGGGACTTAACCCGGAATTA-ATAACTCGCACA
1 AATGCCTTCGGGACTTAACCCGGAATTAGA-AACTCGCACA
* ** ** *
87198289 AATACCTTC-GGATCTTAGTCCGG-ATATAGTCACTTAGCACA
1 AATGCCTTCGGGA-CTTAACCCGGAAT-TAGAAAC-TCGCACA
*
87198330 AA-GCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
87198353 CAGCATTCAA
Statistics
Matches: 117, Mismatches: 19, Indels: 15
0.77 0.13 0.10
Matches are distributed among these distances:
39 8 0.07
40 98 0.84
41 11 0.09
ACGTcount: A:0.28, C:0.26, G:0.21, T:0.24
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGAATTAGAAACTCGCACA
Found at i:87198283 original size:80 final size:80
Alignment explanation
Indices: 87198172--87198352 Score: 201
Period size: 80 Copynumber: 2.3 Consensus size: 80
87198162 CTCATTCAAT
* * * * *
87198172 GCCTTCGGGACTTAACCCGGATTTTAAAACTCGGACGAATGCCTTTGGGA-CTTAACCCGGA-AT
1 GCCTTCGGGACTTAACCCGGATATTAAAACTCGCACAAATACC-TTCGGATCTTAACCCGGATA-
*
87198235 TAGT-A-TCTCGCACAAA
64 TAGTCACT-TAGCACAAA
**
87198251 GGCCTTCGGGACTTAACCCGGA-ATTAATAACTCGCACAAATACCTTCGGATCTTAGTCCGGATA
1 -GCCTTCGGGACTTAACCCGGATATTAA-AACTCGCACAAATACCTTCGGATCTTAACCCGGATA
87198315 TAGTCACTTAGCACAAA
64 TAGTCACTTAGCACAAA
*
87198332 GCCTTCGGGACTTAGCCCGGA
1 GCCTTCGGGACTTAACCCGGA
87198353 CAGCATTCAA
Statistics
Matches: 87, Mismatches: 9, Indels: 10
0.82 0.08 0.09
Matches are distributed among these distances:
79 9 0.10
80 67 0.77
81 10 0.11
82 1 0.01
ACGTcount: A:0.28, C:0.27, G:0.22, T:0.24
Consensus pattern (80 bp):
GCCTTCGGGACTTAACCCGGATATTAAAACTCGCACAAATACCTTCGGATCTTAACCCGGATATA
GTCACTTAGCACAAA
Found at i:87223848 original size:16 final size:16
Alignment explanation
Indices: 87223827--87223865 Score: 60
Period size: 16 Copynumber: 2.4 Consensus size: 16
87223817 TTTTAGGTTG
*
87223827 AAGATGGCATAAAAAT
1 AAGATGACATAAAAAT
*
87223843 AAGATGATATAAAAAT
1 AAGATGACATAAAAAT
87223859 AAGATGA
1 AAGATGA
87223866 TTTCTTTTAT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.59, C:0.03, G:0.18, T:0.21
Consensus pattern (16 bp):
AAGATGACATAAAAAT
Found at i:87223866 original size:16 final size:16
Alignment explanation
Indices: 87223835--87223866 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
87223825 TGAAGATGGC
87223835 ATAAAAATAAGATGAT
1 ATAAAAATAAGATGAT
87223851 ATAAAAATAAGATGAT
1 ATAAAAATAAGATGAT
87223867 TTCTTTTATC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.62, C:0.00, G:0.12, T:0.25
Consensus pattern (16 bp):
ATAAAAATAAGATGAT
Found at i:87224326 original size:14 final size:14
Alignment explanation
Indices: 87224309--87224336 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
87224299 TATTCAATCA
87224309 CATAAGTAATTATG
1 CATAAGTAATTATG
87224323 CATAAGTAATTATG
1 CATAAGTAATTATG
87224337 AACTCACAAC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.43, C:0.07, G:0.14, T:0.36
Consensus pattern (14 bp):
CATAAGTAATTATG
Found at i:87227037 original size:41 final size:41
Alignment explanation
Indices: 87226989--87227074 Score: 154
Period size: 41 Copynumber: 2.1 Consensus size: 41
87226979 TGAATCTTTA
* *
87226989 AACACATAGCATATTATAAACCAGCACAACATTCTTTATTT
1 AACACATAGCATATTATAAACCAACACAACATTCTTGATTT
87227030 AACACATAGCATATTATAAACCAACACAACATTCTTGATTT
1 AACACATAGCATATTATAAACCAACACAACATTCTTGATTT
87227071 AACA
1 AACA
87227075 ATGGTAGATT
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
41 43 1.00
ACGTcount: A:0.44, C:0.22, G:0.05, T:0.29
Consensus pattern (41 bp):
AACACATAGCATATTATAAACCAACACAACATTCTTGATTT
Found at i:87227055 original size:22 final size:22
Alignment explanation
Indices: 87226989--87227057 Score: 56
Period size: 22 Copynumber: 3.3 Consensus size: 22
87226979 TGAATCTTTA
87226989 AACACATAGCATATTATAAACC
1 AACACATAGCATATTATAAACC
* * ***
87227011 AGCACA-A-CAT-TCT-TTATTT
1 AACACATAGCATAT-TATAAACC
87227030 AACACATAGCATATTATAAACC
1 AACACATAGCATATTATAAACC
87227052 AACACA
1 AACACA
87227058 ACATTCTTGA
Statistics
Matches: 32, Mismatches: 10, Indels: 10
0.62 0.19 0.19
Matches are distributed among these distances:
19 8 0.25
20 5 0.16
21 5 0.16
22 14 0.44
ACGTcount: A:0.46, C:0.23, G:0.04, T:0.26
Consensus pattern (22 bp):
AACACATAGCATATTATAAACC
Found at i:87227458 original size:48 final size:47
Alignment explanation
Indices: 87227350--87227729 Score: 314
Period size: 48 Copynumber: 7.9 Consensus size: 47
87227340 AGGGTAAATT
* * ** *
87227350 GCCGATGCCATGTCCTAGACATGGTCTTACACTGGCTCACACGTCGGG
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATAT-GTG
** * * *
87227398 GTTGATGTCATGTCCCAGACATGGTCTTACACTGGCTCTCATAGTGTG
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATA-TGTG
* * * *
87227446 GCCGATGCCATGTACCAGACATGATCTTACACTAGCACACATATAAAT-
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATAT--GTG
* * * * **
87227494 GCCGATGCCATGTCCCAAACATGGTCTTACAATAACACACATAT-CA
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATATGTG
* * * *
87227540 ACACTGATGCCATGTCCCATACATGGTCTTACACTGGCTCTCATAATGTG
1 GC-C-GATGCCATGTCCCAGACATGGTCTTACACTAGCTCACAT-ATGTG
* * * * * ***
87227590 GCCAATGCCATGTTCTAGACATGATCTTACACTAGCACACATATCAAC
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATAT-GTG
* * * *
87227638 GCCGATTCCATGTCCCAGACATGGTCTTATATTAGCTCTCATAATGTG
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCACAT-ATGTG
* * *
87227686 GCCGATGACATGTCCCAGACATGGTCTTACATTAGCACACATAT
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATAT
87227730 CACCCAATTG
Statistics
Matches: 261, Mismatches: 61, Indels: 21
0.76 0.18 0.06
Matches are distributed among these distances:
46 1 0.00
47 6 0.02
48 246 0.94
49 7 0.03
50 1 0.00
ACGTcount: A:0.27, C:0.28, G:0.18, T:0.27
Consensus pattern (47 bp):
GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATATGTG
Found at i:87227549 original size:96 final size:96
Alignment explanation
Indices: 87227351--87227731 Score: 363
Period size: 96 Copynumber: 4.0 Consensus size: 96
87227341 GGGTAAATTG
* * * ** * ** *
87227351 CCGATGCCATGTCCTAGACATGGTCTTACACTGGCTCACA-CGTCGGGGTTGATGTCATGTCCCA
1 CCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATAAT-GTGGCCGATGCCATGTCCCA
* * * * ****
87227415 GACATGGTCTTACACTGGCTCTCATAGT-GTGG
65 GACATGGTCTTACAATAGCACACATA-TCAACA
* * * * **
87227447 CCGATGCCATGTACCAGACATGATCTTACACTAGCACACATATAAAT-GCCGATGCCATGTCCCA
1 CCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATA-ATGTGGCCGATGCCATGTCCCA
* *
87227511 AACATGGTCTTACAATAACACACATATCAACA
65 GACATGGTCTTACAATAGCACACATATCAACA
* * * * * *
87227543 CTGATGCCATGTCCCATACATGGTCTTACACTGGCTCTCATAATGTGGCCAATGCCATGTTCTAG
1 CCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATAATGTGGCCGATGCCATGTCCCAG
* * *
87227608 ACATGATCTTACACTAGCACACATATCAACG
66 ACATGGTCTTACAATAGCACACATATCAACA
* * * *
87227639 CCGATTCCATGTCCCAGACATGGTCTTATATTAGCTCTCATAATGTGGCCGATGACATGTCCCAG
1 CCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATAATGTGGCCGATGCCATGTCCCAG
*
87227704 ACATGGTCTTACATTAGCACACATATCA
66 ACATGGTCTTACAATAGCACACATATCA
87227732 CCCAATTGTC
Statistics
Matches: 229, Mismatches: 52, Indels: 8
0.79 0.18 0.03
Matches are distributed among these distances:
95 3 0.01
96 226 0.99
ACGTcount: A:0.27, C:0.28, G:0.18, T:0.27
Consensus pattern (96 bp):
CCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATAATGTGGCCGATGCCATGTCCCAG
ACATGGTCTTACAATAGCACACATATCAACA
Found at i:87227610 original size:144 final size:144
Alignment explanation
Indices: 87227400--87227666 Score: 444
Period size: 144 Copynumber: 1.9 Consensus size: 144
87227390 ACGTCGGGGT
* * *
87227400 TGATGTCATGTCCCAGACATGGTCTTACACTGGCTCTCATAGTGTGGCCGATGCCATGTACCAGA
1 TGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATGTGGCCAATGCCATGTACCAGA
*
87227465 CATGATCTTACACTAGCACACATATAAATGCCGATGCCATGTCCCAAACATGGTCTTACAATAAC
66 CATGATCTTACACTAGCACACATATAAACGCCGATGCCATGTCCCAAACATGGTCTTACAATAAC
87227530 ACACATATCAACAC
131 ACACATATCAACAC
* * *
87227544 TGATGCCATGTCCCATACATGGTCTTACACTGGCTCTCATAATGTGGCCAATGCCATGTTCTAGA
1 TGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATGTGGCCAATGCCATGTACCAGA
* * *
87227609 CATGATCTTACACTAGCACACATATCAACGCCGATTCCATGTCCCAGACATGGTCTTA
66 CATGATCTTACACTAGCACACATATAAACGCCGATGCCATGTCCCAAACATGGTCTTA
87227667 TATTAGCTCT
Statistics
Matches: 113, Mismatches: 10, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
144 113 1.00
ACGTcount: A:0.28, C:0.28, G:0.17, T:0.27
Consensus pattern (144 bp):
TGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATGTGGCCAATGCCATGTACCAGA
CATGATCTTACACTAGCACACATATAAACGCCGATGCCATGTCCCAAACATGGTCTTACAATAAC
ACACATATCAACAC
Found at i:87230109 original size:26 final size:26
Alignment explanation
Indices: 87230073--87230125 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
87230063 CACTTAGAGA
87230073 CAAACTCTAAAACGTTCCTCTTCATT
1 CAAACTCTAAAACGTTCCTCTTCATT
* *
87230099 CAAACTTTAAAATGTTCCTCTTCATT
1 CAAACTCTAAAACGTTCCTCTTCATT
87230125 C
1 C
87230126 CTAACCACTA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.28, G:0.04, T:0.38
Consensus pattern (26 bp):
CAAACTCTAAAACGTTCCTCTTCATT
Found at i:87231673 original size:13 final size:13
Alignment explanation
Indices: 87231655--87231681 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
87231645 GCTTGGCAGG
87231655 GACACGCCTGTGT
1 GACACGCCTGTGT
87231668 GACACGCCTGTGT
1 GACACGCCTGTGT
87231681 G
1 G
87231682 CGATTACTTC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.15, C:0.30, G:0.33, T:0.22
Consensus pattern (13 bp):
GACACGCCTGTGT
Found at i:87236774 original size:48 final size:47
Alignment explanation
Indices: 87236647--87236777 Score: 127
Period size: 48 Copynumber: 2.7 Consensus size: 47
87236637 ATTGCTGATT
* * * * *
87236647 CCATGTTCCAGACATGGTCTTACATTGACTCACATGTCGAGGCCAATG
1 CCATGTCCCAGACATGGTCTTACA-TGGCTCTCATGTCAAGACCAATG
* * * * * * *
87236695 CCATTTCCCAGACATGGTTTTACATAAGCTCTCGTTTCAATACCGATG
1 CCATGTCCCAGACATGGTCTTACAT-GGCTCTCATGTCAAGACCAATG
87236743 CCATGTCCCAGACATGGTCTTACACTGGCTCTCAT
1 CCATGTCCCAGACATGGTCTTACA-TGGCTCTCAT
87236778 AATGTGGCCA
Statistics
Matches: 65, Mismatches: 16, Indels: 4
0.76 0.19 0.05
Matches are distributed among these distances:
47 1 0.02
48 63 0.97
49 1 0.02
ACGTcount: A:0.24, C:0.29, G:0.18, T:0.30
Consensus pattern (47 bp):
CCATGTCCCAGACATGGTCTTACATGGCTCTCATGTCAAGACCAATG
Found at i:87236808 original size:23 final size:23
Alignment explanation
Indices: 87236778--87236821 Score: 79
Period size: 23 Copynumber: 1.9 Consensus size: 23
87236768 TGGCTCTCAT
87236778 AATGTGGCCAATGCCATGTCCAG
1 AATGTGGCCAATGCCATGTCCAG
*
87236801 AATGTGGCCGATGCCATGTCC
1 AATGTGGCCAATGCCATGTCC
87236822 CAGACATGGT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.23, C:0.27, G:0.27, T:0.23
Consensus pattern (23 bp):
AATGTGGCCAATGCCATGTCCAG
Found at i:87236863 original size:71 final size:71
Alignment explanation
Indices: 87236737--87236869 Score: 173
Period size: 71 Copynumber: 1.9 Consensus size: 71
87236727 CGTTTCAATA
* * ***
87236737 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATGTGGCCAATGCCATGTCCAGA
1 CCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCGCATAATGCAACCAATGCCATGTCCAGA
87236802 ATGTGG
66 ATGTGG
87236808 CCGATGCCATGTCCCAGACATGGTCTTACACTAGCAT-GCAT-AT-CAACACAGATGCCATGTCC
1 CCGATGCCATGTCCCAGACATGGTCTTACACTAGC-TCGCATAATGCAAC-CA-ATGCCATGTCC
87236870 CAAACATGGT
Statistics
Matches: 54, Mismatches: 5, Indels: 6
0.83 0.08 0.09
Matches are distributed among these distances:
69 1 0.02
70 4 0.07
71 48 0.89
72 1 0.02
ACGTcount: A:0.25, C:0.30, G:0.21, T:0.24
Consensus pattern (71 bp):
CCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCGCATAATGCAACCAATGCCATGTCCAGA
ATGTGG
Found at i:87236903 original size:119 final size:119
Alignment explanation
Indices: 87236687--87236903 Score: 321
Period size: 119 Copynumber: 1.8 Consensus size: 119
87236677 CACATGTCGA
* * * * * * *
87236687 GGCCAATGCCATTTCCCAGACATGGTTTTACATAAGCTCTCGTTTCAATACCGATGCCATGTCCC
1 GGCCAATGCCATGTCCCAGACATGGTCTTACATAAGCTCGCATATCAACACAGATGCCATGTCCC
*
87236752 AGACATGGTCTTACACTGGCTCTCATAATGTGGCCAATGCCATGTCCAGAATGT
66 AAACATGGTCTTACACTGGCTCTCATAATGTGGCCAATGCCATGTCCAGAATGT
*
87236806 GGCCGATGCCATGTCCCAGACATGGTCTTACACT-AGCAT-GCATATCAACACAGATGCCATGTC
1 GGCCAATGCCATGTCCCAGACATGGTCTTACA-TAAGC-TCGCATATCAACACAGATGCCATGTC
87236869 CCAAACATGGTCTTACACTGGCTCTCATAATGTGG
64 CCAAACATGGTCTTACACTGGCTCTCATAATGTGG
87236904 ACGATGTCAT
Statistics
Matches: 87, Mismatches: 9, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
119 85 0.98
120 2 0.02
ACGTcount: A:0.25, C:0.28, G:0.20, T:0.27
Consensus pattern (119 bp):
GGCCAATGCCATGTCCCAGACATGGTCTTACATAAGCTCGCATATCAACACAGATGCCATGTCCC
AAACATGGTCTTACACTGGCTCTCATAATGTGGCCAATGCCATGTCCAGAATGT
Found at i:87236915 original size:48 final size:48
Alignment explanation
Indices: 87236801--87236915 Score: 117
Period size: 48 Copynumber: 2.4 Consensus size: 48
87236791 CCATGTCCAG
* *
87236801 AATGTGGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCATGCAT
1 AATGTGGACGATGCCATGTCCCAAACATGGTCTTACACTAGCATGCAT
**** * *
87236849 -ATCAACACAGATGCCATGTCCCAAACATGGTCTTACACTGGC-TCTCAT
1 AATGTGGAC-GATGCCATGTCCCAAACATGGTCTTACACTAGCAT-GCAT
*
87236897 AATGTGGACGATGTCATGT
1 AATGTGGACGATGCCATGT
87236916 AACACCCCTC
Statistics
Matches: 51, Mismatches: 13, Indels: 6
0.73 0.19 0.09
Matches are distributed among these distances:
47 4 0.08
48 43 0.84
49 4 0.08
ACGTcount: A:0.27, C:0.26, G:0.21, T:0.26
Consensus pattern (48 bp):
AATGTGGACGATGCCATGTCCCAAACATGGTCTTACACTAGCATGCAT
Found at i:87239486 original size:47 final size:48
Alignment explanation
Indices: 87239432--87239562 Score: 158
Period size: 47 Copynumber: 2.8 Consensus size: 48
87239422 AGAATGTTAC
* *
87239432 ATGCCATGTCCCAGATATGGTCTTACACTAGCACACATACA-AT-GCCG
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCACACATA-ATATGGCCA
* * * * *
87239479 ATGCCATGTCCTAGACATGGTCTTACACTGGCTCTCATAATGTGGCCA
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCACACATAATATGGCCA
* *
87239527 ATGCCATGTCCCAGACATGGTCTTACAGTAACACAC
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCACAC
87239563 GCATCAATCA
Statistics
Matches: 69, Mismatches: 13, Indels: 3
0.81 0.15 0.04
Matches are distributed among these distances:
46 1 0.01
47 35 0.51
48 33 0.48
ACGTcount: A:0.27, C:0.29, G:0.18, T:0.25
Consensus pattern (48 bp):
ATGCCATGTCCCAGACATGGTCTTACACTAGCACACATAATATGGCCA
Found at i:87246911 original size:50 final size:50
Alignment explanation
Indices: 87246845--87247110 Score: 345
Period size: 50 Copynumber: 5.3 Consensus size: 50
87246835 ATCACTCATT
* *
87246845 TGGCTGAATATACAAGATCAAATTTAATATCACATATGTGCTTACATATA
1 TGGCCGAATATACAAGATCAAATTTAATATCACATATGTGCTTACCTATA
* *
87246895 TTGCCGAATATGCAAGATCAAATTTAATATCACATATGTGCTTACCTATA
1 TGGCCGAATATACAAGATCAAATTTAATATCACATATGTGCTTACCTATA
* ** * * *
87246945 AGGCCGAATATGTAAGATCAAATTTAACATCACATATGTACTTACTTATA
1 TGGCCGAATATACAAGATCAAATTTAATATCACATATGTGCTTACCTATA
*
87246995 TGGCCGAATATACAA-ATTCAAATATAATATCACATATGTGCTTACCTATA
1 TGGCCGAATATACAAGA-TCAAATTTAATATCACATATGTGCTTACCTATA
* * ** * * * *
87247045 TGGCCGAATATTCAAGATCCAATACAACATCACATATGTACATACCTATG
1 TGGCCGAATATACAAGATCAAATTTAATATCACATATGTGCTTACCTATA
87247095 TGGCCGAATATACAAG
1 TGGCCGAATATACAAG
87247111 GTCATTTAGC
Statistics
Matches: 189, Mismatches: 25, Indels: 4
0.87 0.11 0.02
Matches are distributed among these distances:
49 1 0.01
50 187 0.99
51 1 0.01
ACGTcount: A:0.39, C:0.18, G:0.12, T:0.31
Consensus pattern (50 bp):
TGGCCGAATATACAAGATCAAATTTAATATCACATATGTGCTTACCTATA
Found at i:87247792 original size:12 final size:12
Alignment explanation
Indices: 87247775--87247800 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
87247765 ATTGTAACAA
87247775 CCCGATTTTGAC
1 CCCGATTTTGAC
87247787 CCCGATTTTGAC
1 CCCGATTTTGAC
87247799 CC
1 CC
87247801 TAGTCAGAAC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.15, C:0.38, G:0.15, T:0.31
Consensus pattern (12 bp):
CCCGATTTTGAC
Found at i:87249205 original size:43 final size:41
Alignment explanation
Indices: 87249047--87249205 Score: 142
Period size: 43 Copynumber: 3.7 Consensus size: 41
87249037 TGTGTTCTCG
* * *
87249047 TGTAAGACCACGTCTGGCACGTTGGCATCGATATGTGATT-T
1 TGTAAGACCACGTCTGGGACGTTGGCATTGA-ATGTGATTCA
* * * *
87249088 TGAGTAAGACCATGTCTGGGACATCGGCATTGTAATTGTGATTCG
1 T--GTAAGACCACGTCTGGGACGTTGGCATTG-AA-TGTGATTCA
**
87249133 TGTAAGACCTTGTCTGGGACAG-TGGCATTGACATGTGATTACA
1 TGTAAGACCACGTCTGGGAC-GTTGGCATTGA-ATGTGATT-CA
*
87249176 TGTAAGACCACGTCTGGGACGTTGACATTG
1 TGTAAGACCACGTCTGGGACGTTGGCATTG
87249206 TACAATATGT
Statistics
Matches: 96, Mismatches: 13, Indels: 16
0.77 0.10 0.13
Matches are distributed among these distances:
41 1 0.01
42 9 0.09
43 77 0.80
44 8 0.08
45 1 0.01
ACGTcount: A:0.24, C:0.18, G:0.28, T:0.30
Consensus pattern (41 bp):
TGTAAGACCACGTCTGGGACGTTGGCATTGAATGTGATTCA
Found at i:87251109 original size:31 final size:31
Alignment explanation
Indices: 87251071--87251134 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
87251061 CCTTTTCATA
87251071 TTTCATATTTCATAACACTGGGCCGAAGCCT
1 TTTCATATTTCATAACACTGGGCCGAAGCCT
** *
87251102 TTTCATATTTCATATTACTGGGTCGAAGCCT
1 TTTCATATTTCATAACACTGGGCCGAAGCCT
87251133 TT
1 TT
87251135 ACTGTAAACG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.23, C:0.22, G:0.16, T:0.39
Consensus pattern (31 bp):
TTTCATATTTCATAACACTGGGCCGAAGCCT
Found at i:87251403 original size:23 final size:23
Alignment explanation
Indices: 87251366--87251467 Score: 168
Period size: 23 Copynumber: 4.4 Consensus size: 23
87251356 ACTGTGGAAA
87251366 AAGCCCTTTTAATAACTGGGGCAT
1 AAGCCC-TTTAATAACTGGGGCAT
87251390 AAGCCCTTTAATAACTGGGGCAT
1 AAGCCCTTTAATAACTGGGGCAT
87251413 AAGCCCTTTAATAACTGGGGCAT
1 AAGCCCTTTAATAACTGGGGCAT
* * *
87251436 AAGCCCTTCAATAACTAGGGCGT
1 AAGCCCTTTAATAACTGGGGCAT
87251459 AAGCCCTTT
1 AAGCCCTTT
87251468 TTCACTTCCT
Statistics
Matches: 74, Mismatches: 4, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
23 68 0.92
24 6 0.08
ACGTcount: A:0.29, C:0.24, G:0.21, T:0.26
Consensus pattern (23 bp):
AAGCCCTTTAATAACTGGGGCAT
Found at i:87251543 original size:20 final size:20
Alignment explanation
Indices: 87251518--87251564 Score: 76
Period size: 20 Copynumber: 2.4 Consensus size: 20
87251508 TTATGATTAC
*
87251518 ATCATGTGTATATCATACAT
1 ATCATGTGCATATCATACAT
87251538 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
87251558 GTCATGT
1 ATCATGT
87251565 TTATCAAAAT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.32, C:0.17, G:0.13, T:0.38
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:87251633 original size:25 final size:25
Alignment explanation
Indices: 87251601--87251648 Score: 78
Period size: 25 Copynumber: 1.9 Consensus size: 25
87251591 ATACATAAAC
* *
87251601 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAATGGTCATTTTTA
87251626 CCTAGGGGCAAAATGGTCATTTT
1 CCTAGGGGCAAAATGGTCATTTT
87251649 CATGTTATAA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.25, C:0.15, G:0.25, T:0.35
Consensus pattern (25 bp):
CCTAGGGGCAAAATGGTCATTTTTA
Found at i:87264435 original size:55 final size:55
Alignment explanation
Indices: 87264346--87264452 Score: 196
Period size: 55 Copynumber: 1.9 Consensus size: 55
87264336 ATACAACGAT
*
87264346 AATTTAACCATTAGTCATCATGCCCATAACTCAAAGGTAAGTTTAAACTTAATAC
1 AATTCAACCATTAGTCATCATGCCCATAACTCAAAGGTAAGTTTAAACTTAATAC
*
87264401 AATTCAACCATTAGTCATCATGCTCATAACTCAAAGGTAAGTTTAAACTTAA
1 AATTCAACCATTAGTCATCATGCCCATAACTCAAAGGTAAGTTTAAACTTAA
87264453 CTTACTCATT
Statistics
Matches: 50, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
55 50 1.00
ACGTcount: A:0.40, C:0.20, G:0.09, T:0.31
Consensus pattern (55 bp):
AATTCAACCATTAGTCATCATGCCCATAACTCAAAGGTAAGTTTAAACTTAATAC
Found at i:87264803 original size:47 final size:46
Alignment explanation
Indices: 87264767--87264890 Score: 194
Period size: 48 Copynumber: 2.7 Consensus size: 46
87264757 ATCGAGGCCA
* *
87264767 ATGCATGCCCCAGACATGTCTTATACTGGCACTCATCTCTATGCCG
1 ATGCATGTCCCAGACATGTCTTATACTGGCACTCATCTCTACGCCG
87264813 ATGCCATGTCCCAGACATGGTCTTATACTGGCACTCATCTCTACGCCG
1 ATG-CATGTCCCAGACAT-GTCTTATACTGGCACTCATCTCTACGCCG
* *
87264861 ATGCATGTCCCAAACATGTCTTACACTGGC
1 ATGCATGTCCCAGACATGTCTTATACTGGC
87264891 GTACAAGTAA
Statistics
Matches: 72, Mismatches: 4, Indels: 4
0.90 0.05 0.05
Matches are distributed among these distances:
46 15 0.21
47 26 0.36
48 31 0.43
ACGTcount: A:0.23, C:0.32, G:0.18, T:0.27
Consensus pattern (46 bp):
ATGCATGTCCCAGACATGTCTTATACTGGCACTCATCTCTACGCCG
Found at i:87264846 original size:48 final size:45
Alignment explanation
Indices: 87264679--87264890 Score: 194
Period size: 47 Copynumber: 4.6 Consensus size: 45
87264669 CGTGCTGATT
* * * *
87264679 CATGTCCCAAACATGTCTTACACTAGCA-CAACTCT-TAACCGATG
1 CATGTCCCAGACATGTCTTACACTGGCATCATCTCTAT-GCCGATG
* * ** * * * *
87264723 CGTGTCACAGACACATCTTACATTGGCTATCATCATCGAGGCCAATG
1 CATGTCCCAGACATGTCTTACACTGGC-ATCATC-TCTATGCCGATG
* *
87264770 CATGCCCCAGACATGTCTTATACTGGCACTCATCTCTATGCCGATG
1 CATGTCCCAGACATGTCTTACACTGGCA-TCATCTCTATGCCGATG
* *
87264816 CCATGTCCCAGACATGGTCTTATACTGGCACTCATCTCTACGCCGATG
1 -CATGTCCCAGACAT-GTCTTACACTGGCA-TCATCTCTATGCCGATG
*
87264864 CATGTCCCAAACATGTCTTACACTGGC
1 CATGTCCCAGACATGTCTTACACTGGC
87264891 GTACAAGTAA
Statistics
Matches: 135, Mismatches: 26, Indels: 12
0.78 0.15 0.07
Matches are distributed among these distances:
44 20 0.15
45 1 0.01
46 25 0.19
47 58 0.43
48 31 0.23
ACGTcount: A:0.25, C:0.32, G:0.17, T:0.26
Consensus pattern (45 bp):
CATGTCCCAGACATGTCTTACACTGGCATCATCTCTATGCCGATG
Found at i:87269959 original size:41 final size:41
Alignment explanation
Indices: 87269914--87270009 Score: 149
Period size: 41 Copynumber: 2.3 Consensus size: 41
87269904 AGGCCTGTTT
87269914 ACACAAGCTGTTAGTC-AGAACATAGCTACACAGTGCTGCTC
1 ACACAAGCTGTTAGTCAAG-ACATAGCTACACAGTGCTGCTC
* * *
87269955 ACACAAGCTGTCAGTCAAGACGTAGCTACACAGTGTTGCTC
1 ACACAAGCTGTTAGTCAAGACATAGCTACACAGTGCTGCTC
87269996 ACACAAGCTGTTAG
1 ACACAAGCTGTTAG
87270010 GTATCCGCAA
Statistics
Matches: 50, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
41 48 0.96
42 2 0.04
ACGTcount: A:0.31, C:0.26, G:0.21, T:0.22
Consensus pattern (41 bp):
ACACAAGCTGTTAGTCAAGACATAGCTACACAGTGCTGCTC
Found at i:87278955 original size:40 final size:40
Alignment explanation
Indices: 87278918--87279101 Score: 207
Period size: 40 Copynumber: 4.6 Consensus size: 40
87278908 GCTACTCGTT
*
87278918 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
* *
87278958 CAAATGCCTTCGGGACTTAACCCGGATT-TAATAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGG-TTATAGTAACTCGCA
*
87278998 CAAATGCCTTCGGG-CTTAGCCCGG-AATTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTA-TAGTAACTCGCA
* * ** * *
87279037 CAAATGCCTTC-GGATCTTAGTCTGAATATAGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGTTATAGTAAC-TCGCA
87279078 CAAA-GCCTTCGGGACTTAGCCCGG
1 CAAATGCCTTCGGGACTTAGCCCGG
87279102 ACATCATTCG
Statistics
Matches: 121, Mismatches: 15, Indels: 16
0.80 0.10 0.11
Matches are distributed among these distances:
38 2 0.02
39 31 0.26
40 74 0.61
41 14 0.12
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
Found at i:87279086 original size:79 final size:81
Alignment explanation
Indices: 87278918--87279102 Score: 227
Period size: 79 Copynumber: 2.3 Consensus size: 81
87278908 GCTACTCGTT
* *
87278918 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCG
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCG
* * *
87278982 GATTTAATAACTCGCA
66 AATATAATAACTAGCA
** *
87278998 CAAATGCCTTCGGG-CTTAGCCCGGAAT-TAGTAACTCGCACAAATGCCTTC-GGATCTTAGTCT
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCC
* *
87279060 GAATATAGTCACTTAGCA
65 GAATATAATAAC-TAGCA
87279078 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
87279103 CATCATTCGA
Statistics
Matches: 91, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 3 0.03
79 54 0.59
80 34 0.37
ACGTcount: A:0.28, C:0.27, G:0.21, T:0.24
Consensus pattern (81 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCG
AATATAATAACTAGCA
Done.