Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A06
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 115140250
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2234201 characters in sequence are not A, C, G, or T
File 263 of 345
Found at i:89655177 original size:40 final size:40
Alignment explanation
Indices: 89655133--89655342 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
89655123 GTGTGCATGA
*
89655133 GCATTTGTGCGAGTTGATATATCCGGGCTAAGACCTGAAG
1 GCATTTGTGCGAGTTGATATATCCGGGCTAAGACCCGAAG
* * *
89655173 GCATTTGTGCGAGTTGCTATACCCGGGTTAAGACCCGAAG
1 GCATTTGTGCGAGTTGATATATCCGGGCTAAGACCCGAAG
* * *
89655213 GCAATTGTGCTAG-TGATTTTATCCGGGCTAAGACCCGAAG
1 GCATTTGTGCGAGTTGA-TATATCCGGGCTAAGACCCGAAG
89655253 GCATTTGTGCGAGTTGATATATCCGGGCTAAGACCCGAAG
1 GCATTTGTGCGAGTTGATATATCCGGGCTAAGACCCGAAG
* * *
89655293 GCATTTGTGCGAGTTGCTATACCCGGGTTAAGACCCGAAG
1 GCATTTGTGCGAGTTGATATATCCGGGCTAAGACCCGAAG
*
89655333 GCAATTGTGC
1 GCATTTGTGC
89655343 TTGTGGTTAT
Statistics
Matches: 151, Mismatches: 17, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
39 2 0.01
40 146 0.97
41 3 0.02
ACGTcount: A:0.24, C:0.20, G:0.30, T:0.26
Consensus pattern (40 bp):
GCATTTGTGCGAGTTGATATATCCGGGCTAAGACCCGAAG
Found at i:89655356 original size:120 final size:119
Alignment explanation
Indices: 89655133--89655362 Score: 415
Period size: 120 Copynumber: 1.9 Consensus size: 119
89655123 GTGTGCATGA
*
89655133 GCATTTGTGCGAGTTGATATATCCGGGCTAAGACCTGAAGGCATTTGTGCGAGTTGCTATACCCG
1 GCATTTGTGCGAGTTGATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATACCCG
*
89655198 GGTTAAGACCCGAAGGCAATTGTGCTAGTGATTTTATCCGGGCTAAGACCCGAAG
66 GGTTAAGACCCGAAGGCAATTGTGCTAGTGATTATATCC-GGCTAAGACCCGAAG
89655253 GCATTTGTGCGAGTTGATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATACCCG
1 GCATTTGTGCGAGTTGATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATACCCG
* *
89655318 GGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATATCCGGCTAA
66 GGTTAAGACCCGAAGGCAATTGTGCTAGTGATTATATCCGGCTAA
89655363 ATTCCAAAGA
Statistics
Matches: 106, Mismatches: 4, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
119 6 0.06
120 100 0.94
ACGTcount: A:0.23, C:0.20, G:0.29, T:0.27
Consensus pattern (119 bp):
GCATTTGTGCGAGTTGATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATACCCG
GGTTAAGACCCGAAGGCAATTGTGCTAGTGATTATATCCGGCTAAGACCCGAAG
Found at i:89663431 original size:40 final size:40
Alignment explanation
Indices: 89663329--89663523 Score: 313
Period size: 40 Copynumber: 4.9 Consensus size: 40
89663319 GCATTTGTGA
89663329 TGATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGT
1 TGATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGT
*
89663369 TGATATA-CCGGGCTAAGACCCGAAGGCATTTGTGCTAG-
1 TGATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGT
*
89663407 TGATTTTATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGT
1 TGA-TATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGT
89663448 TGATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGT
1 TGATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGT
* * * *
89663488 TGCTATACCCGGGTTAAGACCCGAAGGCAATTGTGC
1 TGATATATCCGGGCTAAGACCCGAAGGCATTTGTGC
89663524 TTGTGGTTAT
Statistics
Matches: 144, Mismatches: 8, Indels: 6
0.91 0.05 0.04
Matches are distributed among these distances:
38 3 0.02
39 33 0.23
40 105 0.73
41 3 0.02
ACGTcount: A:0.25, C:0.21, G:0.29, T:0.25
Consensus pattern (40 bp):
TGATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGT
Found at i:89663552 original size:119 final size:119
Alignment explanation
Indices: 89663329--89663543 Score: 360
Period size: 119 Copynumber: 1.8 Consensus size: 119
89663319 GCATTTGTGA
89663329 TGATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATATACCGGGCTAAGACCCGAAG
1 TGATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATATACCGGGCTAAGACCCGAAG
* *
89663394 GCATTTGTGCTAGTGATTTTATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGT
66 GCAATTGTGCTAGTGATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGT
* *
89663448 TGATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATACCCGGGTTAAGACCCGAA
1 TGATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATATA-CCGGGCTAAGACCCGAA
* *
89663513 GGCAATTGTGCTTGTGGTTATATCC-GGCTAA
65 GGCAATTGTGCTAGTGATTATATCCGGGCTAA
89663544 ATTCCGAAGA
Statistics
Matches: 89, Mismatches: 6, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
119 52 0.58
120 37 0.42
ACGTcount: A:0.24, C:0.20, G:0.29, T:0.27
Consensus pattern (119 bp):
TGATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATATACCGGGCTAAGACCCGAAG
GCAATTGTGCTAGTGATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGT
Found at i:89666575 original size:74 final size:76
Alignment explanation
Indices: 89666402--89666617 Score: 249
Period size: 74 Copynumber: 2.8 Consensus size: 76
89666392 TTGAATGCTG
* * * * *
89666402 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGAATATATCCGGACTAAGAT-CCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCTTTGTGC-GAGT-ACTAAATCCGGGCTAAG-TCCCGAAGGCATT
*
89666466 TGTGCGAGATACAAA
63 CGTGC-AGATACAAA
* *
89666481 TCCGGGTTAAGCCCCGAAGGCTTTGTGCGAGTACTAAATCCGGGTTAAGTCCCGAAGGCATTCGT
1 TCCGGGTTAAGTCCCGAAGGCTTTGTGCGAGTACTAAATCCGGGCTAAGTCCCGAAGGCATTCGT
*
89666546 GC-GAT-TAAA
66 GCAGATACAAA
* * * *
89666555 TCCGGGTTAAGTCCCGAAGGCATTGTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCTTTGTGCGAG-TACTAAATCCGGGCTAAGTCCCGAAGGCATT
89666618 GAACGAGGAG
Statistics
Matches: 120, Mismatches: 15, Indels: 8
0.84 0.10 0.06
Matches are distributed among these distances:
74 31 0.26
75 31 0.26
76 1 0.01
77 28 0.23
78 3 0.03
79 26 0.22
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (76 bp):
TCCGGGTTAAGTCCCGAAGGCTTTGTGCGAGTACTAAATCCGGGCTAAGTCCCGAAGGCATTCGT
GCAGATACAAA
Found at i:89666618 original size:39 final size:38
Alignment explanation
Indices: 89666402--89666651 Score: 224
Period size: 39 Copynumber: 6.5 Consensus size: 38
89666392 TTGAATGCTG
* * * * *
89666402 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTGTGC-GAGT-ACTAAA
**
89666442 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATAC-AAA
1 TCCGGGTTAAG-TCCCGAAGGCA-TTGTGCGAG-TACTAAA
* *
89666481 TCCGGGTTAAGCCCCGAAGGCTTTGTGCGAGTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGTACTAAA
89666519 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGA-T--TAAA
1 TCCGGGTTAAGTCCCGAAGGCATT-GTGCGAGTACTAAA
*
89666555 TCCGGGTTAAGTCCCGAAGGCATTGTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTGTGCGAG-TACTAAA
* * * ** * *
89666594 ACCGGGCTATGTCCCGAAGGCATTGAACGAGGAGCTATA
1 TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGTA-CTAAA
*
89666633 TCC-GGTTAAATCCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
89666652 TACGTGATTT
Statistics
Matches: 175, Mismatches: 24, Indels: 24
0.78 0.11 0.11
Matches are distributed among these distances:
35 5 0.03
36 28 0.16
37 4 0.02
38 49 0.28
39 60 0.34
40 21 0.12
41 8 0.05
ACGTcount: A:0.27, C:0.22, G:0.28, T:0.24
Consensus pattern (38 bp):
TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGTACTAAA
Found at i:89674400 original size:39 final size:38
Alignment explanation
Indices: 89674295--89674517 Score: 204
Period size: 39 Copynumber: 5.7 Consensus size: 38
89674285 TTGAATGCTG
* *
89674295 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGA-ATATA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGT-ACA-A-A
**
89674335 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACAAA
1 TCCGGGTTAAG-TCCCGAAGGCATTTGTGCGAG-TACAAA
*
89674374 TTCCGGGTTAAG-CCCGAAGGCCTTTGTGCGAGGTACTAAA
1 -TCCGGGTTAAGTCCCGAAGGCATTTGTGCGA-GTAC-AAA
* *
89674414 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTA-CAAA
*
89674453 TCCGGGTTAAGTCCCGAAGGCA-TTGTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAG-TAC-AAA
* * *
89674492 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGTTAAGTCCCGAAGGCATTTG
89674518 AACGAGGAGC
Statistics
Matches: 156, Mismatches: 14, Indels: 26
0.80 0.07 0.13
Matches are distributed among these distances:
38 7 0.04
39 84 0.54
40 55 0.35
41 10 0.06
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (38 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTACAAA
Found at i:89674431 original size:79 final size:78
Alignment explanation
Indices: 89674295--89674517 Score: 254
Period size: 78 Copynumber: 2.8 Consensus size: 78
89674285 TTGAATGCTG
* * * * * *
89674295 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGAATATATCCGGACTAAGAT-CCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCTTTGTGCGAGGT-ACTAAATCCGGGCTAAG-TCCCGAAGGCATT
89674359 TGTGCGAG-ATACAAA
64 TGTGCGAGTAT-CAAA
*
89674374 TTCCGGGTTAAG-CCCGAAGGCCTTTGTGCGAGGTACTAAATCCGGGTTAAGTCCCGAAGGCATT
1 -TCCGGGTTAAGTCCCGAAGG-CTTTGTGCGAGGTACTAAATCCGGGCTAAGTCCCGAAGGCATT
* *
89674438 CGTGCGAGTATTAAA
64 TGTGCGAGTATCAAA
* * * * *
89674453 TCCGGGTTAAGTCCCGAAGGCATTGTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGTTAAGTCCCGAAGGCTTTGTGCGAGGTACTAAATCCGGGCTAAGTCCCGAAGGCATTTG
89674518 AACGAGGAGC
Statistics
Matches: 123, Mismatches: 16, Indels: 10
0.83 0.11 0.07
Matches are distributed among these distances:
78 50 0.41
79 50 0.41
80 23 0.19
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (78 bp):
TCCGGGTTAAGTCCCGAAGGCTTTGTGCGAGGTACTAAATCCGGGCTAAGTCCCGAAGGCATTTG
TGCGAGTATCAAA
Found at i:89674539 original size:78 final size:79
Alignment explanation
Indices: 89674375--89674550 Score: 205
Period size: 78 Copynumber: 2.3 Consensus size: 79
89674365 AGATACAAAT
* * *
89674375 TCCGGGTTAAG-CCCGAAGGCCTTTGTGCGAGGTACTAAATCCGGGTTAAGTCCCGAAGGCATTC
1 TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGGTACTAAAACCGGGCTAAGTCCCGAAGGCATTC
** * *
89674439 GTGCGAGTATTAAA
66 GAACGAGGACTAAA
* * * *
89674453 TCCGGGTTAAGTCCCGAAGG-CATTGTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATTT
1 TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGGTACTAAAACCGGGCTAAGTCCCGAAGGCATTC
*
89674517 GAACGAGGAGCTATA
66 GAACGAGGA-CTAAA
*
89674532 TCC-GGTTAAATCCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
89674551 TACGTGATTT
Statistics
Matches: 83, Mismatches: 13, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
78 69 0.83
79 14 0.17
ACGTcount: A:0.26, C:0.22, G:0.29, T:0.24
Consensus pattern (79 bp):
TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGGTACTAAAACCGGGCTAAGTCCCGAAGGCATTC
GAACGAGGACTAAA
Found at i:89680708 original size:43 final size:44
Alignment explanation
Indices: 89680647--89680857 Score: 175
Period size: 43 Copynumber: 4.9 Consensus size: 44
89680637 GTTTATGTGG
*
89680647 AAAATGCCGCTACAGAACATGACCTTTAGCGGAG-TTTCTCACA
1 AAAATGCCGCTATAGAACATGACCTTTAGCGGAGCTTTCTCACA
* * *
89680690 AAAATACCGCTATAGAACATGACCTTTAGCGGCGCTTTTCCCACA
1 AAAATGCCGCTATAGAACATGACCTTTAGCGGAGC-TTTCTCACA
* * *
89680735 AACAT--CGTTATAGAACATGACCTTTTA-CGGTGCTTT-TC-CTA
1 AAAATGCCGCTATAGAACATGACC-TTTAGCGGAGCTTTCTCAC-A
* * * * *
89680776 CAAACGCCACTATAGAACATGACCTTTAGCGGCGCTTT-TCCCA
1 AAAATGCCGCTATAGAACATGACCTTTAGCGGAGCTTTCTCACA
* * * * * * *
89680819 CAAACGCTGCTAAAGAACATGACTTTTAGTGGCGCTTTC
1 AAAATGCCGCTATAGAACATGACCTTTAGCGGAGCTTTC
89680858 CCCACAAACA
Statistics
Matches: 140, Mismatches: 19, Indels: 17
0.80 0.11 0.10
Matches are distributed among these distances:
40 1 0.01
41 4 0.03
42 7 0.05
43 111 0.79
44 5 0.04
45 12 0.09
ACGTcount: A:0.29, C:0.27, G:0.17, T:0.27
Consensus pattern (44 bp):
AAAATGCCGCTATAGAACATGACCTTTAGCGGAGCTTTCTCACA
Found at i:89680856 original size:86 final size:86
Alignment explanation
Indices: 89680699--89680866 Score: 241
Period size: 86 Copynumber: 2.0 Consensus size: 86
89680689 AAAAATACCG
* *
89680699 CTATAGAACATGACCTTTAGCGGCGCTTTTCCCACAAACATCGTTATAGAACATGACCTTTTACG
1 CTATAGAACATGACCTTTAGCGGCGCTTTTCCCACAAACATCGCTAAAGAACATGACCTTTTACG
* * *
89680764 GTGCTTTTCCTACAAACGCCA
66 GCGCTTTCCCCACAAACGCCA
*
89680785 CTATAGAACATGACCTTTAGCGGCGCTTTTCCCACAAAC-GCTGCTAAAGAACATGA-CTTTTAG
1 CTATAGAACATGACCTTTAGCGGCGCTTTTCCCACAAACATC-GCTAAAGAACATGACCTTTTA-
*
89680848 TGGCGCTTTCCCCACAAAC
64 CGGCGCTTTCCCCACAAAC
89680867 ACTAGTAAAG
Statistics
Matches: 73, Mismatches: 7, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
85 7 0.10
86 66 0.90
ACGTcount: A:0.28, C:0.29, G:0.16, T:0.27
Consensus pattern (86 bp):
CTATAGAACATGACCTTTAGCGGCGCTTTTCCCACAAACATCGCTAAAGAACATGACCTTTTACG
GCGCTTTCCCCACAAACGCCA
Found at i:89680862 original size:43 final size:44
Alignment explanation
Indices: 89680698--89680890 Score: 216
Period size: 43 Copynumber: 4.5 Consensus size: 44
89680688 CAAAAATACC
* * *
89680698 GCTATAGAACATGACCTTTAGCGGCGCTTTTCCCACAAAC-ATC
1 GCTATAGAACATGACTTTTAGCGGCGCTTTTCCCACAAACGCTA
* * * *
89680741 GTTATAGAACATGACCTTTTA-CGGTGCTTTTCCTACAAACGCCA
1 GCTATAGAACATGA-CTTTTAGCGGCGCTTTTCCCACAAACGCTA
*
89680785 -CTATAGAACATGACCTTTAGCGGCGCTTTTCCCACAAACGCT-
1 GCTATAGAACATGACTTTTAGCGGCGCTTTTCCCACAAACGCTA
* * * *
89680827 GCTAAAGAACATGACTTTTAGTGGCGCTTTCCCCACAAACACTA
1 GCTATAGAACATGACTTTTAGCGGCGCTTTTCCCACAAACGCTA
* *
89680871 G-TAAAGAACATGGCTTTTAG
1 GCTATAGAACATGACTTTTAG
89680891 ACTAATAACG
Statistics
Matches: 127, Mismatches: 18, Indels: 10
0.82 0.12 0.06
Matches are distributed among these distances:
42 5 0.04
43 116 0.91
44 6 0.05
ACGTcount: A:0.29, C:0.26, G:0.17, T:0.27
Consensus pattern (44 bp):
GCTATAGAACATGACTTTTAGCGGCGCTTTTCCCACAAACGCTA
Found at i:89680890 original size:86 final size:86
Alignment explanation
Indices: 89680654--89680882 Score: 232
Period size: 86 Copynumber: 2.7 Consensus size: 86
89680644 TGGAAAATGC
* * * * * * *
89680654 CGCTACAGAACATGACC-TTTAGCGGAG-TTTCTCACAAAAATACCGCTATAGAACATGACCTTT
1 CGCTAAAGAACATGACCTTTTA-CGGCGCTTTC-CCCACAAACACCACTAAAGAACATGACCTTT
89680717 AGCGGCGCTTTTCCCACAAACAT
64 AGCGGCGCTTTTCCCACAAACAT
* * * * * * *
89680740 CGTTATAGAACATGACCTTTTACGGTGCTTTTCCTACAAACGCCACTATAGAACATGACCTTTAG
1 CGCTAAAGAACATGACCTTTTACGGCGCTTTCCCCACAAACACCACTAAAGAACATGACCTTTAG
*
89680805 CGGCGCTTTTCCCACAAAC-G
66 CGGCGCTTTTCCCACAAACAT
* * *
89680825 CTGCTAAAGAACATGA-CTTTTAGTGGCGCTTTCCCCACAAACACTAGTAAAGAACATG
1 C-GCTAAAGAACATGACCTTTTA-CGGCGCTTTCCCCACAAACACCACTAAAGAACATG
89680883 GCTTTTAGAC
Statistics
Matches: 118, Mismatches: 21, Indels: 8
0.80 0.14 0.05
Matches are distributed among these distances:
85 7 0.06
86 104 0.88
87 7 0.06
ACGTcount: A:0.31, C:0.27, G:0.17, T:0.26
Consensus pattern (86 bp):
CGCTAAAGAACATGACCTTTTACGGCGCTTTCCCCACAAACACCACTAAAGAACATGACCTTTAG
CGGCGCTTTTCCCACAAACAT
Found at i:89683089 original size:38 final size:37
Alignment explanation
Indices: 89683023--89683153 Score: 102
Period size: 38 Copynumber: 3.4 Consensus size: 37
89683013 ACCAGTTTGG
* * *
89683023 CACCCAGTGCCTCATCGGATAGTTCGAAGCAAAGTTGA
1 CACCCAGTGCCTCATCGGCTAG-CCGAAGTAAAGTTGA
* *
89683061 CACCCAGTGTCTCATCGGCCTAGCCGAAGTAAAG-TGG
1 CACCCAGTGCCTCATCGG-CTAGCCGAAGTAAAGTTGA
* * * *
89683098 TACCCAGTACCTCATCGAATCTATCCGAAGTAACAGTATGA
1 CACCCAGTGCCTCATCG--GCTAGCCGAAGTAA-AGT-TGA
* *
89683139 GACCCAGTGTCTCAT
1 CACCCAGTGCCTCAT
89683154 TGACTCGAGG
Statistics
Matches: 73, Mismatches: 14, Indels: 9
0.76 0.15 0.09
Matches are distributed among these distances:
37 16 0.22
38 38 0.52
39 5 0.07
41 14 0.19
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.22
Consensus pattern (37 bp):
CACCCAGTGCCTCATCGGCTAGCCGAAGTAAAGTTGA
Found at i:89683329 original size:18 final size:16
Alignment explanation
Indices: 89683286--89683330 Score: 56
Period size: 18 Copynumber: 2.7 Consensus size: 16
89683276 CAATTTCTCA
89683286 CATTTTCAA-TTTAAT
1 CATTTTCAATTTTAAT
89683301 CATTTTCCAATTTTCAAT
1 CATTTT-CAATTTT-AAT
89683319 CAATTTTCAATT
1 C-ATTTTCAATT
89683331 CACATACTCA
Statistics
Matches: 26, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
15 6 0.23
16 3 0.12
17 3 0.12
18 9 0.35
19 5 0.19
ACGTcount: A:0.31, C:0.18, G:0.00, T:0.51
Consensus pattern (16 bp):
CATTTTCAATTTTAAT
Found at i:89684190 original size:11 final size:11
Alignment explanation
Indices: 89684174--89684199 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
89684164 AACCCTAGTT
89684174 TTTCCTTTTTC
1 TTTCCTTTTTC
89684185 TTTCCTTTTTC
1 TTTCCTTTTTC
89684196 TTTC
1 TTTC
89684200 TTTCCTTCCC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.00, C:0.27, G:0.00, T:0.73
Consensus pattern (11 bp):
TTTCCTTTTTC
Found at i:89684266 original size:20 final size:21
Alignment explanation
Indices: 89684233--89684276 Score: 63
Period size: 20 Copynumber: 2.1 Consensus size: 21
89684223 CTCTATTTCT
*
89684233 TTTCTGTTTCTTTTAC-TTTG
1 TTTCTGTTTATTTTACTTTTG
*
89684253 TTTCTTTTTATTTTACTTTTG
1 TTTCTGTTTATTTTACTTTTG
89684274 TTT
1 TTT
89684277 ATTATTTTAT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
20 14 0.67
21 7 0.33
ACGTcount: A:0.07, C:0.11, G:0.07, T:0.75
Consensus pattern (21 bp):
TTTCTGTTTATTTTACTTTTG
Found at i:89684981 original size:3 final size:3
Alignment explanation
Indices: 89684975--89684999 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
89684965 TATAATAATA
89684975 ATT ATT ATT ATT ATT ATT ATT ATT A
1 ATT ATT ATT ATT ATT ATT ATT ATT A
89685000 AACCTTAATA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (3 bp):
ATT
Found at i:89688338 original size:40 final size:39
Alignment explanation
Indices: 89688271--89688518 Score: 282
Period size: 40 Copynumber: 6.3 Consensus size: 39
89688261 CCTTCGGAGT
* ** * *
89688271 TTAGCCGGGTATAGCCACTAGCTCAAATGCCTTCGGGAC
1 TTAGCCCGGTATAGTAACTCGCACAAATGCCTTCGGGAC
*
89688310 TTAGCCCGGTTATAGTAACTTGCACAAATGCCTTCGGGAC
1 TTAGCCCGG-TATAGTAACTCGCACAAATGCCTTCGGGAC
*
89688350 TTAGCCCGGTATAATAACTCGCACAAATGCCTTCGGGAC
1 TTAGCCCGGTATAGTAACTCGCACAAATGCCTTCGGGAC
* * *
89688389 TTAGCCCGGATATAATAGCTCGCACAAACGCCTTCGGGAC
1 TTAGCCCGG-TATAGTAACTCGCACAAATGCCTTCGGGAC
* * *
89688429 TTAGCCCGGATATAGTAGCTCGCACGAATGCCTTCAGGAC
1 TTAGCCCGG-TATAGTAACTCGCACAAATGCCTTCGGGAC
* ** * *
89688469 TTAGCCCGGAATTAGCCACTAGCTCAAATG-CTCTCGGGAC
1 TTAGCCCGGTA-TAGTAACTCGCACAAATGCCT-TCGGGAC
89688509 TTAGCCCGGT
1 TTAGCCCGGT
89688519 TATCATCCGA
Statistics
Matches: 183, Mismatches: 22, Indels: 7
0.86 0.10 0.03
Matches are distributed among these distances:
39 48 0.26
40 135 0.74
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.23
Consensus pattern (39 bp):
TTAGCCCGGTATAGTAACTCGCACAAATGCCTTCGGGAC
Found at i:89688392 original size:79 final size:78
Alignment explanation
Indices: 89688294--89688518 Score: 281
Period size: 79 Copynumber: 2.8 Consensus size: 78
89688284 GCCACTAGCT
*
89688294 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTTGCACAAATGCCTTCGGGACTTAGCCCGG
1 CAAATGCCTTCGGGACTTAGCCCGG-TATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGG
89688359 TATAATAACTCGCA
65 TATAATAACTCGCA
* * * *
89688373 CAAATGCCTTCGGGACTTAGCCCGGATATAATAGCTCGCACAAACGCCTTCGGGACTTAGCCCGG
1 CAAATGCCTTCGGGACTTAGCCCGG-TATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGG
* *
89688438 ATATAGTAGCTCGCA
65 -TATAATAACTCGCA
* * * ** *
89688453 CGAATGCCTTCAGGACTTAGCCCGGAATTAGCCACTAGCTCAAATG-CTCTCGGGACTTAGCCCG
1 CAAATGCCTTCGGGACTTAGCCCGGTA-TAGTAACTAGCACAAATGCCT-TCGGGACTTAGCCCG
89688517 GT
64 GT
89688519 TATCATCCGA
Statistics
Matches: 126, Mismatches: 17, Indels: 6
0.85 0.11 0.04
Matches are distributed among these distances:
79 64 0.51
80 62 0.49
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.23
Consensus pattern (78 bp):
CAAATGCCTTCGGGACTTAGCCCGGTATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGT
ATAATAACTCGCA
Found at i:89702953 original size:22 final size:22
Alignment explanation
Indices: 89702925--89702973 Score: 89
Period size: 22 Copynumber: 2.2 Consensus size: 22
89702915 CAATATATAT
89702925 TTATGTAAGTTATAATCCAAAG
1 TTATGTAAGTTATAATCCAAAG
*
89702947 TTATGTAAGTTATGATCCAAAG
1 TTATGTAAGTTATAATCCAAAG
89702969 TTATG
1 TTATG
89702974 ATGTGATATA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 26 1.00
ACGTcount: A:0.37, C:0.08, G:0.16, T:0.39
Consensus pattern (22 bp):
TTATGTAAGTTATAATCCAAAG
Found at i:89702969 original size:13 final size:13
Alignment explanation
Indices: 89702931--89702975 Score: 53
Period size: 13 Copynumber: 3.8 Consensus size: 13
89702921 ATATTTATGT
*
89702931 AAGTTATAATCCA
1 AAGTTATGATCCA
89702944 AAGTTATG-T---
1 AAGTTATGATCCA
89702953 AAGTTATGATCCA
1 AAGTTATGATCCA
89702966 AAGTTATGAT
1 AAGTTATGAT
89702976 GTGATATATA
Statistics
Matches: 27, Mismatches: 1, Indels: 8
0.75 0.03 0.22
Matches are distributed among these distances:
9 8 0.30
10 1 0.04
12 1 0.04
13 17 0.63
ACGTcount: A:0.40, C:0.09, G:0.16, T:0.36
Consensus pattern (13 bp):
AAGTTATGATCCA
Found at i:89703653 original size:31 final size:30
Alignment explanation
Indices: 89703618--89703677 Score: 95
Period size: 31 Copynumber: 2.0 Consensus size: 30
89703608 ATCTTTAATT
89703618 CTAAAATAAA-AATAAAAATTTAGAATTAAAA
1 CTAAAATAAATAATAAAAA-TTAG-ATTAAAA
89703649 CTAAAATAAATAATAAAAATTAGATTAAA
1 CTAAAATAAATAATAAAAATTAGATTAAA
89703678 TATAAAGATA
Statistics
Matches: 28, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
30 6 0.21
31 14 0.50
32 8 0.29
ACGTcount: A:0.67, C:0.03, G:0.03, T:0.27
Consensus pattern (30 bp):
CTAAAATAAATAATAAAAATTAGATTAAAA
Found at i:89704377 original size:24 final size:22
Alignment explanation
Indices: 89704323--89704377 Score: 65
Period size: 22 Copynumber: 2.4 Consensus size: 22
89704313 CCTATTTCAA
* * *
89704323 ATAGGGTAAATGCTATGTTTAT
1 ATAGGGTAAATGCTAAGTTAAC
89704345 ATAGGGTAAATGCTAAGTATAAAC
1 ATAGGGTAAATGCTAAGT-T-AAC
89704369 ATAGGGTAA
1 ATAGGGTAA
89704378 GGGGTGAAAA
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
22 17 0.61
23 1 0.04
24 10 0.36
ACGTcount: A:0.40, C:0.05, G:0.24, T:0.31
Consensus pattern (22 bp):
ATAGGGTAAATGCTAAGTTAAC
Found at i:89705273 original size:26 final size:25
Alignment explanation
Indices: 89705239--89705297 Score: 93
Period size: 26 Copynumber: 2.4 Consensus size: 25
89705229 GCAAAAAAAA
89705239 TATC-AACACCGGATCGGAGGAATT
1 TATCAAACACCGGATCGGAGGAATT
*
89705263 TATCATAACACCGGATTGGAGGAATT
1 TATCA-AACACCGGATCGGAGGAATT
89705289 TATCAAACA
1 TATCAAACA
89705298 AAATCCAAGT
Statistics
Matches: 32, Mismatches: 1, Indels: 3
0.89 0.03 0.08
Matches are distributed among these distances:
24 4 0.12
25 4 0.12
26 24 0.75
ACGTcount: A:0.37, C:0.19, G:0.20, T:0.24
Consensus pattern (25 bp):
TATCAAACACCGGATCGGAGGAATT
Found at i:89706072 original size:17 final size:17
Alignment explanation
Indices: 89706050--89706082 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
89706040 AAATTGAGTT
*
89706050 TAATTATCTATGAATTG
1 TAATTATCCATGAATTG
89706067 TAATTATCCATGAATT
1 TAATTATCCATGAATT
89706083 ACAATGTTAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.36, C:0.09, G:0.09, T:0.45
Consensus pattern (17 bp):
TAATTATCCATGAATTG
Found at i:89709095 original size:24 final size:25
Alignment explanation
Indices: 89709068--89709342 Score: 215
Period size: 24 Copynumber: 11.4 Consensus size: 25
89709058 TAATTCATAT
* *
89709068 ACATATTGACATTCAAATCTC-CAC
1 ACATAGTGCCATTCAAATCTCGCAC
89709092 ACATAGTGCCATAT-AAATC-CGCAC
1 ACATAGTGCCAT-TCAAATCTCGCAC
* *
89709116 ATATAGTGCCATACAAAT-TCGCAC
1 ACATAGTGCCATTCAAATCTCGCAC
* *
89709140 ACATAGTGCC-TT-AGTAAT-TCACAT
1 ACATAGTGCCATTCA--AATCTCGCAC
* *
89709164 ACATATTGTCATTCAAATCT-GCAC
1 ACATAGTGCCATTCAAATCTCGCAC
89709188 ACATAGTGCCATAT-AAATC-CGCAC
1 ACATAGTGCCAT-TCAAATCTCGCAC
* * *
89709212 ATATAGTGCCATACAAAT-TTGCAC
1 ACATAGTGCCATTCAAATCTCGCAC
* *
89709236 ACATAGTGCC-TT-AGTAAT-TCACAT
1 ACATAGTGCCATTCA--AATCTCGCAC
* *
89709260 ACATATTGACATTCAAATCT-GCAC
1 ACATAGTGCCATTCAAATCTCGCAC
* *
89709284 ACATAGTGCCATACAAAT-TCGTAC
1 ACATAGTGCCATTCAAATCTCGCAC
*
89709308 ACATAGTGCCATTCAAAT-TAGCAC
1 ACATAGTGCCATTCAAATCTCGCAC
89709332 ACATAGTGCCA
1 ACATAGTGCCA
89709343 AAGTCATTTC
Statistics
Matches: 199, Mismatches: 33, Indels: 38
0.74 0.12 0.14
Matches are distributed among these distances:
22 2 0.01
23 4 0.02
24 183 0.92
25 8 0.04
26 2 0.01
ACGTcount: A:0.36, C:0.25, G:0.11, T:0.27
Consensus pattern (25 bp):
ACATAGTGCCATTCAAATCTCGCAC
Found at i:89709096 original size:48 final size:48
Alignment explanation
Indices: 89709040--89709342 Score: 303
Period size: 48 Copynumber: 6.3 Consensus size: 48
89709030 ATGTTAACCC
* * * *
89709040 GCACACATAGTGCCTTAGTAATTCATATACATATTGACATTCAAATCT
1 GCACACATAGTGCCATAGTAATTCACACACATATTGCCATTCAAATCT
* * * *
89709088 CCACACATAGTGCCATA-TAAATC-CGCACATATAGTGCCATACAAAT-T
1 GCACACATAGTGCCATAGTAATTCACACACATAT--TGCCATTCAAATCT
* * *
89709135 CGCACACATAGTGCCTTAGTAATTCACATACATATTGTCATTCAAATCT
1 -GCACACATAGTGCCATAGTAATTCACACACATATTGCCATTCAAATCT
* * * *
89709184 GCACACATAGTGCCATA-TAAATC-CGCACATATAGTGCCATACAAATTT
1 GCACACATAGTGCCATAGTAATTCACACACATAT--TGCCATTCAAATCT
* * *
89709232 GCACACATAGTGCCTTAGTAATTCACATACATATTGACATTCAAATCT
1 GCACACATAGTGCCATAGTAATTCACACACATATTGCCATTCAAATCT
** ** *
89709280 GCACACATAGTGCCATACAAATTCGTACACATAGTGCCATTCAAAT-T
1 GCACACATAGTGCCATAGTAATTCACACACATATTGCCATTCAAATCT
89709327 AGCACACATAGTGCCA
1 -GCACACATAGTGCCA
89709343 AAGTCATTTC
Statistics
Matches: 207, Mismatches: 37, Indels: 22
0.78 0.14 0.08
Matches are distributed among these distances:
46 13 0.06
47 12 0.06
48 157 0.76
49 11 0.05
50 14 0.07
ACGTcount: A:0.36, C:0.25, G:0.12, T:0.28
Consensus pattern (48 bp):
GCACACATAGTGCCATAGTAATTCACACACATATTGCCATTCAAATCT
Found at i:89709179 original size:96 final size:96
Alignment explanation
Indices: 89709039--89709341 Score: 516
Period size: 96 Copynumber: 3.2 Consensus size: 96
89709029 CATGTTAACC
* *
89709039 CGCACACATAGTGCCTTAGTAATTCATATACATATTGACATTCAAATCTCCACACATAGTGCCAT
1 CGCACACATAGTGCCTTAGTAATTCACATACATATTGACATTCAAATCTGCACACATAGTGCCAT
89709104 ATAAATCCGCACATATAGTGCCATACAAATT
66 ATAAATCCGCACATATAGTGCCATACAAATT
*
89709135 CGCACACATAGTGCCTTAGTAATTCACATACATATTGTCATTCAAATCTGCACACATAGTGCCAT
1 CGCACACATAGTGCCTTAGTAATTCACATACATATTGACATTCAAATCTGCACACATAGTGCCAT
89709200 ATAAATCCGCACATATAGTGCCATACAAATT
66 ATAAATCCGCACATATAGTGCCATACAAATT
*
89709231 TGCACACATAGTGCCTTAGTAATTCACATACATATTGACATTCAAATCTGCACACATAGTGCCAT
1 CGCACACATAGTGCCTTAGTAATTCACATACATATTGACATTCAAATCTGCACACATAGTGCCAT
* * * * *
89709296 ACAAATTCGTACACATAGTGCCATTCAAATT
66 ATAAATCCGCACATATAGTGCCATACAAATT
*
89709327 AGCACACATAGTGCC
1 CGCACACATAGTGCC
89709342 AAAGTCATTT
Statistics
Matches: 196, Mismatches: 11, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
96 196 1.00
ACGTcount: A:0.36, C:0.25, G:0.12, T:0.28
Consensus pattern (96 bp):
CGCACACATAGTGCCTTAGTAATTCACATACATATTGACATTCAAATCTGCACACATAGTGCCAT
ATAAATCCGCACATATAGTGCCATACAAATT
Found at i:89709790 original size:16 final size:16
Alignment explanation
Indices: 89709769--89709800 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
89709759 ATTACTTCAA
89709769 ATAAACACACATATAT
1 ATAAACACACATATAT
*
89709785 ATAAACACATATATAT
1 ATAAACACACATATAT
89709801 TTTTGTACAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.56, C:0.16, G:0.00, T:0.28
Consensus pattern (16 bp):
ATAAACACACATATAT
Found at i:89715621 original size:46 final size:45
Alignment explanation
Indices: 89715571--89715746 Score: 187
Period size: 46 Copynumber: 3.8 Consensus size: 45
89715561 ATGGTTGAGC
*
89715571 GTTCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTACGGATGCGAAT
1 GTTCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA-GGATGCGAAT
* *
89715617 GTTCGAACTCGTTGAGTTGAGTCCGAGTTCA-TGA-GATG-TAACT
1 GTTCGAACTCGTTGAGTTGAGTCCGAGTTCACTTAGGATGCGAA-T
* *
89715660 AGGCATCTGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGAATGCGAAT
1 --G-TTC-GAACTCGTTGAGTTGAGTCCGAGTTCACTTA-GGATGCGAAT
** * *
89715710 GCCCGAGCTCGTTGAGTTGAGTCTGAGTTCACTTAGG
1 GTTCGAACTCGTTGAGTTGAGTCCGAGTTCACTTAGG
89715747 GGCGGGTTAC
Statistics
Matches: 109, Mismatches: 12, Indels: 19
0.78 0.09 0.14
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 4 0.04
46 61 0.56
47 28 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.22, C:0.19, G:0.29, T:0.31
Consensus pattern (45 bp):
GTTCGAACTCGTTGAGTTGAGTCCGAGTTCACTTAGGATGCGAAT
Found at i:89718136 original size:37 final size:37
Alignment explanation
Indices: 89718078--89718296 Score: 375
Period size: 37 Copynumber: 5.9 Consensus size: 37
89718068 GCTCAGACGA
* * * **
89718078 AATCTCCACATGAAGTTATCGGGTCTTACCTAGACAT
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
89718115 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
*
89718152 AATCCCCACACGTAGTCATCGGGTCTTACCCGGACAT
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
89718189 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
*
89718226 AATCTCCACACATAGTCATCGGGTCTTACCCGGACAT
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
89718263 AATCTCCACACGTAGTCATCGGGTCTTACCCGGA
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGA
89718297 ATATATTTCC
Statistics
Matches: 173, Mismatches: 9, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 173 1.00
ACGTcount: A:0.26, C:0.32, G:0.18, T:0.25
Consensus pattern (37 bp):
AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
Found at i:89718580 original size:47 final size:47
Alignment explanation
Indices: 89718507--89718675 Score: 268
Period size: 47 Copynumber: 3.6 Consensus size: 47
89718497 ACACGTTTCG
* * *
89718507 CATTAGCCATTC-GCCTTACCACATATATTCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
*
89718553 CATTGGCCATTCGGCCTTATCTCATATATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
* *
89718600 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
*
89718647 CATTGGCCATTCGGCCTTATCACACATAT
1 CATTGGCCATTCGGCCTTATCACATATAT
89718676 ATATACGGGT
Statistics
Matches: 114, Mismatches: 8, Indels: 1
0.93 0.07 0.01
Matches are distributed among these distances:
46 11 0.10
47 103 0.90
ACGTcount: A:0.25, C:0.30, G:0.11, T:0.33
Consensus pattern (47 bp):
CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
Found at i:89721612 original size:40 final size:40
Alignment explanation
Indices: 89721582--89721791 Score: 314
Period size: 40 Copynumber: 5.3 Consensus size: 40
89721572 GGACTAAGAT
* * * **
89721582 CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTC
89721622 CCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTC
89721662 CCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTC
89721702 CCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTC
* ** * * *
89721742 CCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTC
1 CCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTC
89721781 CCGAAGGCATT
1 CCGAAGGCATT
89721792 TGAACGAGGA
Statistics
Matches: 159, Mismatches: 11, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
39 33 0.21
40 126 0.79
ACGTcount: A:0.24, C:0.21, G:0.29, T:0.26
Consensus pattern (40 bp):
CCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTC
Found at i:89725712 original size:80 final size:78
Alignment explanation
Indices: 89725628--89725799 Score: 211
Period size: 79 Copynumber: 2.2 Consensus size: 78
89725618 GGACTAAGAT
* * *
89725628 CCGAAGGAATTTGTGCGAGATACA-AATTCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACT
1 CCGAAGGCATTTGTGCGAG-T-CATAAATCCGGGTTAAGCCCCGAAGG-CATTGTGCGAGATACT
* *
89725692 AAATCCGGGTTAAGTC
63 AAAACCGGGCTAAGTC
* * * *
89725708 CCGAAGGCATTCGTGCGAGTCATTAAATCCGGGTTAAGTCCCGAAGGCATTGTGTGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGTCA-TAAATCCGGGTTAAGCCCCGAAGGCATTGTGCGAGATACTAA
*
89725773 AACCGGGCTATGTC
65 AACCGGGCTAAGTC
89725787 CCGAAGGCATTTG
1 CCGAAGGCATTTG
89725800 AACGAGGAGC
Statistics
Matches: 79, Mismatches: 11, Indels: 5
0.83 0.12 0.05
Matches are distributed among these distances:
78 2 0.03
79 39 0.49
80 38 0.48
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.24
Consensus pattern (78 bp):
CCGAAGGCATTTGTGCGAGTCATAAATCCGGGTTAAGCCCCGAAGGCATTGTGCGAGATACTAAA
ACCGGGCTAAGTC
Found at i:89725790 original size:39 final size:39
Alignment explanation
Indices: 89725575--89725797 Score: 207
Period size: 40 Copynumber: 5.6 Consensus size: 39
89725565 TTGAATGCTG
* * * * * *
89725575 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTGTGC-GAGTTACTAAA
** * *
89725615 TCCGGACTAAGAT-CCGAAGGAATTTGTGCGAGATAC-AAA
1 TCCGGGTTAAG-TCCCGAAGGCA-TTGTGCGAGTTACTAAA
* * *
89725654 TTCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACTAAA
1 -TCCGGGTTAAGTCCCGAAGG-CATTGTGCGAGTTACTAAA
* *
89725695 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTCATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATT-GTGCGAGTTACTAAA
*
89725735 TCCGGGTTAAGTCCCGAAGGCATTGTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGTTACTAAA
* * *
89725774 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
89725798 TGAACGAGGA
Statistics
Matches: 152, Mismatches: 24, Indels: 15
0.80 0.13 0.08
Matches are distributed among these distances:
39 38 0.25
40 104 0.68
41 10 0.07
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (39 bp):
TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGTTACTAAA
Found at i:89725817 original size:79 final size:80
Alignment explanation
Indices: 89725655--89725832 Score: 200
Period size: 79 Copynumber: 2.2 Consensus size: 80
89725645 AGATACAAAT
* * * *
89725655 TCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATTC
1 TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTC
** *
89725720 GTGCGAGTCATTAAA
66 GAACGAGTCACTAAA
* * * *
89725735 TCCGGGTTAAGTCCCGAAGG-CATTGTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATTT
1 TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTC
* *
89725799 GAACGAG-GAGCTATA
66 GAACGAGTCA-CTAAA
*
89725814 TCC-GGTTAAATCCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
89725833 TATGTGATTT
Statistics
Matches: 83, Mismatches: 14, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
78 16 0.19
79 48 0.58
80 19 0.23
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.24
Consensus pattern (80 bp):
TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTC
GAACGAGTCACTAAA
Found at i:89730974 original size:64 final size:64
Alignment explanation
Indices: 89730893--89731076 Score: 185
Period size: 67 Copynumber: 2.8 Consensus size: 64
89730883 AGACATTATG
* *
89730893 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
** * * * * *
89730957 ATGTAGCTAGGTCGCATGCATGGTTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACCATGTAGACAAGAGAGCTACGAGAT
89731022 AA
63 AA
* * * *
89731024 ACTG--GCTAGGTCACATGGGTGGTACTAAGTGTTCACCATGT-GTACAAGAGAGC
1 A-TGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAG-ACAAGAGAGC
89731077 CGAACTATAT
Statistics
Matches: 96, Mismatches: 19, Indels: 11
0.76 0.15 0.09
Matches are distributed among these distances:
62 1 0.01
63 19 0.20
64 20 0.21
65 8 0.08
66 15 0.16
67 31 0.32
68 2 0.02
ACGTcount: A:0.30, C:0.17, G:0.29, T:0.23
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:89733801 original size:46 final size:45
Alignment explanation
Indices: 89733749--89733923 Score: 203
Period size: 46 Copynumber: 3.8 Consensus size: 45
89733739 TGGTTGAGCA
89733749 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTACGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA-GGATGCGAATG
* * *
89733795 TTCGAACTCGTTGAGTTGAGTCCGAGTTC-GTTA-GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTAGGATGCGAA-T--G
*
89733840 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA-GGATGCGAATG
* * *
89733888 CCCGAGCTCGTTGAGTTGAGTTCGAGTTCACTTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTAGG
89733924 GGCGGGTTAC
Statistics
Matches: 110, Mismatches: 10, Indels: 19
0.79 0.07 0.14
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 6 0.05
46 59 0.54
47 28 0.25
48 4 0.04
50 4 0.04
51 2 0.02
ACGTcount: A:0.21, C:0.21, G:0.29, T:0.30
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTAGGATGCGAATG
Found at i:89733905 original size:93 final size:93
Alignment explanation
Indices: 89733746--89733916 Score: 288
Period size: 93 Copynumber: 1.8 Consensus size: 93
89733736 GGATGGTTGA
* **
89733746 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTACGGATGCGAATGTTCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTACGGATGCGAACGCCCGAACTCGTTGAGT
89733811 TGAGTCCGAGTTCGTTAGATGTAACTAG
66 TGAGTCCGAGTTCGTTAGATGTAACTAG
* *
89733839 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTACGGATGCGAACGCCCGAACTCGTTGAGT
*
89733904 TGAGTTCGAGTTC
66 TGAGTCCGAGTTC
89733917 ACTTAGGGGC
Statistics
Matches: 72, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.21, C:0.21, G:0.29, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTACGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTTAGATGTAACTAG
Found at i:89734405 original size:26 final size:26
Alignment explanation
Indices: 89734376--89734483 Score: 198
Period size: 26 Copynumber: 4.2 Consensus size: 26
89734366 TGGTACAAAT
89734376 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
89734402 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
89734428 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
89734454 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
89734480 TGAT
1 TGAT
89734484 GGGCATTTCA
Statistics
Matches: 78, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 78 1.00
ACGTcount: A:0.32, C:0.07, G:0.25, T:0.35
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:89735982 original size:26 final size:26
Alignment explanation
Indices: 89735953--89736005 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
89735943 TTTACAGTTT
89735953 TACCCCTAGGAGATAAATT-ACCGAAA
1 TACCCCTAGG-GATAAATTGACCGAAA
* *
89735979 TACCCCTAGGGTTAAATTGACCTAAA
1 TACCCCTAGGGATAAATTGACCGAAA
89736005 T
1 T
89736006 GCATGTTTGA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.38, C:0.23, G:0.15, T:0.25
Consensus pattern (26 bp):
TACCCCTAGGGATAAATTGACCGAAA
Found at i:89741128 original size:26 final size:26
Alignment explanation
Indices: 89741098--89741184 Score: 147
Period size: 26 Copynumber: 3.3 Consensus size: 26
89741088 TCAAGAAGGC
89741098 CCATTATCATGAAATATTTACCTAAT
1 CCATTATCATGAAATATTTACCTAAT
89741124 CCATTATCATGAAATATTTACCTAAT
1 CCATTATCATGAAATATTTACCTAAT
* * *
89741150 CCATTATCATGGAACATTTACCTAAC
1 CCATTATCATGAAATATTTACCTAAT
89741176 CCATTATCA
1 CCATTATCA
89741185 ATTTGTACCA
Statistics
Matches: 58, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 58 1.00
ACGTcount: A:0.37, C:0.23, G:0.05, T:0.36
Consensus pattern (26 bp):
CCATTATCATGAAATATTTACCTAAT
Found at i:89745422 original size:48 final size:48
Alignment explanation
Indices: 89745370--89745624 Score: 299
Period size: 48 Copynumber: 5.3 Consensus size: 48
89745360 CCATGTTAAC
89745370 CCGCACACATAGTGCCTTAGTAATTCACATACATATTGACATTCAAAT
1 CCGCACACATAGTGCCTTAGTAATTCACATACATATTGACATTCAAAT
* * * *
89745418 CCGCACACATAGTGCCATA-TAAATTTGCACAT--ATAGTGCCATACAAAT
1 CCGCACACATAGTGCCTTAGT-AA-TT-CACATACATATTGACATTCAAAT
**
89745466 TTGCACACATAGTGCCTTAGTAATTCACATACATATTGACATTCAAAT
1 CCGCACACATAGTGCCTTAGTAATTCACATACATATTGACATTCAAAT
* * *
89745514 CCGCACACATAGTGCCATA-TAAATCTGCACAT--ATAGTG-CAATACAAAT
1 CCGCACACATAGTGCCTTAGT-AAT-T-CACATACATATTGAC-ATTCAAAT
* *
89745562 TCGCACACATAGTGCCTTAGTAATTCACATACATATTGACAATCAAAT
1 CCGCACACATAGTGCCTTAGTAATTCACATACATATTGACATTCAAAT
89745610 CCGCACACATAGTGC
1 CCGCACACATAGTGC
89745625 AATACAAATT
Statistics
Matches: 172, Mismatches: 21, Indels: 28
0.78 0.10 0.13
Matches are distributed among these distances:
46 10 0.06
47 6 0.03
48 140 0.81
49 6 0.03
50 10 0.06
ACGTcount: A:0.36, C:0.25, G:0.12, T:0.27
Consensus pattern (48 bp):
CCGCACACATAGTGCCTTAGTAATTCACATACATATTGACATTCAAAT
Found at i:89745487 original size:96 final size:96
Alignment explanation
Indices: 89745372--89745673 Score: 505
Period size: 96 Copynumber: 3.1 Consensus size: 96
89745362 ATGTTAACCC
89745372 GCACACATAGTGCCTTAGTAATTCACATACATATTGACATTCAAATCCGCACACATAGTGCCATA
1 GCACACATAGTGCCTTAGTAATTCACATACATATTGACATTCAAATCCGCACACATAGTGCCATA
*
89745437 TAAATTTGCACATATAGTGCCATACAAATTT
66 TAAATTTGCACATATAGTGCCATACAAATTA
89745468 GCACACATAGTGCCTTAGTAATTCACATACATATTGACATTCAAATCCGCACACATAGTGCCATA
1 GCACACATAGTGCCTTAGTAATTCACATACATATTGACATTCAAATCCGCACACATAGTGCCATA
* * *
89745533 TAAATCTGCACATATAGTGCAATACAAATTC
66 TAAATTTGCACATATAGTGCCATACAAATTA
* *
89745564 GCACACATAGTGCCTTAGTAATTCACATACATATTGACAATCAAATCCGCACACATAGTGCAATA
1 GCACACATAGTGCCTTAGTAATTCACATACATATTGACATTCAAATCCGCACACATAGTGCCATA
* * * * *
89745629 CAAATTCGTACACATAGTGCCATTCAAATTA
66 TAAATTTGCACATATAGTGCCATACAAATTA
89745660 GCACACATAGTGCC
1 GCACACATAGTGCC
89745674 AAAGTCATTT
Statistics
Matches: 193, Mismatches: 13, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
96 193 1.00
ACGTcount: A:0.37, C:0.24, G:0.12, T:0.27
Consensus pattern (96 bp):
GCACACATAGTGCCTTAGTAATTCACATACATATTGACATTCAAATCCGCACACATAGTGCCATA
TAAATTTGCACATATAGTGCCATACAAATTA
Found at i:89745635 original size:48 final size:48
Alignment explanation
Indices: 89745370--89745674 Score: 280
Period size: 48 Copynumber: 6.4 Consensus size: 48
89745360 CCATGTTAAC
* * * *
89745370 CCGCACACATAGTGCCTTAGTAATTCACATACATATTGACATTCAAAT
1 CCGCACACATAGTGCCATAGAAATTCACATACATAGTGACAATCAAAT
* *
89745418 CCGCACACATAGTGCCATATAAATTTGCACAT--ATAGTG-CCATACAAAT
1 CCGCACACATAGTGCCATAGAAA-TT-CACATACATAGTGACAAT-CAAAT
** * * * *
89745466 TTGCACACATAGTGCCTTAGTAATTCACATACATATTGACATTCAAAT
1 CCGCACACATAGTGCCATAGAAATTCACATACATAGTGACAATCAAAT
*
89745514 CCGCACACATAGTGCCATATAAATCTGCACAT--ATAGTG-CAATACAAAT
1 CCGCACACATAGTGCCATAGAAAT-T-CACATACATAGTGACAAT-CAAAT
* * * *
89745562 TCGCACACATAGTGCCTTAGTAATTCACATACATATTGACAATCAAAT
1 CCGCACACATAGTGCCATAGAAATTCACATACATAGTGACAATCAAAT
* * ** * * *
89745610 CCGCACACATAGTGCAATACAAATTCGTACACATAGTGCCATTCAAAT
1 CCGCACACATAGTGCCATAGAAATTCACATACATAGTGACAATCAAAT
**
89745658 TAGCACACATAGTGCCA
1 CCGCACACATAGTGCCA
89745675 AAGTCATTTC
Statistics
Matches: 205, Mismatches: 40, Indels: 24
0.76 0.15 0.09
Matches are distributed among these distances:
46 10 0.05
47 8 0.04
48 168 0.82
49 9 0.04
50 10 0.05
ACGTcount: A:0.37, C:0.25, G:0.12, T:0.27
Consensus pattern (48 bp):
CCGCACACATAGTGCCATAGAAATTCACATACATAGTGACAATCAAAT
Found at i:89745673 original size:24 final size:24
Alignment explanation
Indices: 89745371--89745674 Score: 221
Period size: 24 Copynumber: 12.7 Consensus size: 24
89745361 CATGTTAACC
89745371 CGCACACATAGTGCC-TT-AGTAATT
1 CGCACACATAGTGCCATTCA--AATT
* * * * *
89745395 CACATACATATTGACATTCAAATC
1 CGCACACATAGTGCCATTCAAATT
89745419 CGCACACATAGTGCCATAT-AAATT
1 CGCACACATAGTGCCAT-TCAAATT
* * *
89745443 TGCACATATAGTGCCATACAAATT
1 CGCACACATAGTGCCATTCAAATT
*
89745467 TGCACACATAGTGCC-TT-AGTAATT
1 CGCACACATAGTGCCATTCA--AATT
* * * * *
89745491 CACATACATATTGACATTCAAATC
1 CGCACACATAGTGCCATTCAAATT
89745515 CGCACACATAGTGCCATAT-AAA-T
1 CGCACACATAGTGCCAT-TCAAATT
* * *
89745538 CTGCACATATAGTGCAATACAAATT
1 C-GCACACATAGTGCCATTCAAATT
89745563 CGCACACATAGTGCC-TT-AGTAATT
1 CGCACACATAGTGCCATTCA--AATT
* * * * * *
89745587 CACATACATATTGACAATCAAATC
1 CGCACACATAGTGCCATTCAAATT
* *
89745611 CGCACACATAGTGCAATACAAATT
1 CGCACACATAGTGCCATTCAAATT
*
89745635 CGTACACATAGTGCCATTCAAATT
1 CGCACACATAGTGCCATTCAAATT
*
89745659 AGCACACATAGTGCCA
1 CGCACACATAGTGCCA
89745675 AAGTCATTTC
Statistics
Matches: 213, Mismatches: 51, Indels: 32
0.72 0.17 0.11
Matches are distributed among these distances:
22 2 0.01
23 3 0.01
24 196 0.92
25 9 0.04
26 3 0.01
ACGTcount: A:0.37, C:0.24, G:0.12, T:0.27
Consensus pattern (24 bp):
CGCACACATAGTGCCATTCAAATT
Found at i:89746122 original size:16 final size:16
Alignment explanation
Indices: 89746101--89746132 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
89746091 ATTACTTCAA
89746101 ATAAACACACATATAT
1 ATAAACACACATATAT
*
89746117 ATAAACACATATATAT
1 ATAAACACACATATAT
89746133 TTTTGTACAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.56, C:0.16, G:0.00, T:0.28
Consensus pattern (16 bp):
ATAAACACACATATAT
Found at i:89752445 original size:25 final size:25
Alignment explanation
Indices: 89752417--89752491 Score: 78
Period size: 25 Copynumber: 2.9 Consensus size: 25
89752407 TGGCGATGCA
89752417 GCAGAGGAGTGTCGATGGTGATGAG
1 GCAGAGGAGTGTCGATGGTGATGAG
* * * *
89752442 GCAGAGAACTGTCGACGGTGATGCG
1 GCAGAGGAGTGTCGATGGTGATGAG
* *
89752467 ACAGAGGGGATAGTCGATGGTGATG
1 GCAGAGGAG-T-GTCGATGGTGATG
89752492 CAGTAGATGG
Statistics
Matches: 39, Mismatches: 9, Indels: 2
0.78 0.18 0.04
Matches are distributed among these distances:
25 26 0.67
26 1 0.03
27 12 0.31
ACGTcount: A:0.25, C:0.12, G:0.44, T:0.19
Consensus pattern (25 bp):
GCAGAGGAGTGTCGATGGTGATGAG
Found at i:89752717 original size:40 final size:40
Alignment explanation
Indices: 89752647--89752784 Score: 143
Period size: 40 Copynumber: 3.4 Consensus size: 40
89752637 GAAATTATAC
* *
89752647 TTTGCGGCGTTTTTCTCCTAGTACCACTAATGCTTGACCT
1 TTTGTGGCGTTTTTCTCCTAGCACCACTAATGCTTGACCT
* ** *
89752687 TTTGTGGCATTTTTCTCCTAGCACTGCTAATGTTTGACCT
1 TTTGTGGCGTTTTTCTCCTAGCACCACTAATGCTTGACCT
* * *
89752727 TTTGTGGCGTTTTTATCATA-AACGTCACTAATGCTTGACCT
1 TTTGTGGCGTTTTTCTCCTAGCAC--CACTAATGCTTGACCT
** *
89752768 TTTACGGTGTTTTTCTC
1 TTTGTGGCGTTTTTCTC
89752785 ATAAAGCCTC
Statistics
Matches: 79, Mismatches: 17, Indels: 3
0.80 0.17 0.03
Matches are distributed among these distances:
39 2 0.03
40 51 0.65
41 26 0.33
ACGTcount: A:0.16, C:0.22, G:0.17, T:0.44
Consensus pattern (40 bp):
TTTGTGGCGTTTTTCTCCTAGCACCACTAATGCTTGACCT
Found at i:89759167 original size:29 final size:29
Alignment explanation
Indices: 89759120--89759190 Score: 83
Period size: 29 Copynumber: 2.4 Consensus size: 29
89759110 TAATTTAATA
89759120 AATTTA-TTAATATGATATTTGTACTTTT
1 AATTTATTTAATATGATATTTGTACTTTT
*
89759148 AATTTATTTAATAT-ACTATTTGTATTTTT
1 AATTTATTTAATATGA-TATTTGTACTTTT
**
89759177 CTTTTAATTTAATA
1 AATTT-ATTTAATA
89759191 ATAAATTTAG
Statistics
Matches: 37, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
28 7 0.19
29 22 0.59
30 8 0.22
ACGTcount: A:0.32, C:0.04, G:0.04, T:0.59
Consensus pattern (29 bp):
AATTTATTTAATATGATATTTGTACTTTT
Found at i:89761121 original size:22 final size:22
Alignment explanation
Indices: 89761096--89761138 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
89761086 TTTCCCTAGT
89761096 TTGCTATTATCTTATTATTATG
1 TTGCTATTATCTTATTATTATG
* *
89761118 TTGCTATTATTTTGTTATTAT
1 TTGCTATTATCTTATTATTAT
89761139 TGTTTGGATA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.21, C:0.07, G:0.09, T:0.63
Consensus pattern (22 bp):
TTGCTATTATCTTATTATTATG
Found at i:89762896 original size:34 final size:34
Alignment explanation
Indices: 89762853--89762920 Score: 136
Period size: 34 Copynumber: 2.0 Consensus size: 34
89762843 AGACCGTTAA
89762853 TTTGAGTTGGGCTCTTCTAGATAACAAGGCTGTC
1 TTTGAGTTGGGCTCTTCTAGATAACAAGGCTGTC
89762887 TTTGAGTTGGGCTCTTCTAGATAACAAGGCTGTC
1 TTTGAGTTGGGCTCTTCTAGATAACAAGGCTGTC
89762921 AAGATCTTAA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 34 1.00
ACGTcount: A:0.21, C:0.18, G:0.26, T:0.35
Consensus pattern (34 bp):
TTTGAGTTGGGCTCTTCTAGATAACAAGGCTGTC
Found at i:89766067 original size:48 final size:48
Alignment explanation
Indices: 89765881--89766129 Score: 166
Period size: 48 Copynumber: 5.4 Consensus size: 48
89765871 ATCCCGTGTG
* *
89765881 AGACCATGT-TCGGGACATGGCATCGGTATCGAGAAGAGATCCCATATA
1 AGACCATGTCT-GGGACATGGCATCGGCATCGATAAGAGATCCCATATA
* * * * * * * ** *
89765929 AGACCATATCAGGGATATGGCTTCGACATCGTTAAGTGATTTCATGTA
1 AGACCATGTCTGGGACATGGCATCGGCATCGATAAGAGATCCCATATA
* *
89765977 AGACCATGTCTGGGACATGGCATC-G-AT--AT--GAGGTCCCGTATA
1 AGACCATGTCTGGGACATGGCATCGGCATCGATAAGAGATCCCATATA
* * *
89766019 AGACCATGTCTGGGACATGGCATCGGCACCGATATGAGA-CTTCATATA
1 AGACCATGTCTGGGACATGGCATCGGCATCGATAAGAGATC-CCATATA
* * * * * *
89766067 AGGCCATATCTGAGATATGGCATC-G-AT-G-TATG-G-TCCCATGTA
1 AGACCATGTCTGGGACATGGCATCGGCATCGATAAGAGATCCCATATA
*
89766109 AGACCATGTCTAGGACATGGC
1 AGACCATGTCTGGGACATGGC
89766130 TTTGGCCCCT
Statistics
Matches: 152, Mismatches: 40, Indels: 24
0.70 0.19 0.11
Matches are distributed among these distances:
42 52 0.34
43 3 0.02
44 6 0.04
45 1 0.01
46 5 0.03
47 2 0.01
48 83 0.55
ACGTcount: A:0.29, C:0.20, G:0.26, T:0.25
Consensus pattern (48 bp):
AGACCATGTCTGGGACATGGCATCGGCATCGATAAGAGATCCCATATA
Found at i:89773943 original size:28 final size:28
Alignment explanation
Indices: 89773903--89773981 Score: 113
Period size: 28 Copynumber: 2.8 Consensus size: 28
89773893 GAATCATTCG
* *
89773903 ATATTTCACACACTAAGTGGCATTCTCA
1 ATATCTCACACACTAAGTGCCATTCTCA
**
89773931 ATATCTCGTACACTAAGTGCCATTCTCA
1 ATATCTCACACACTAAGTGCCATTCTCA
*
89773959 ATATTTCACACACTAAGTGCCAT
1 ATATCTCACACACTAAGTGCCAT
89773982 ATTTGATGTC
Statistics
Matches: 44, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
28 44 1.00
ACGTcount: A:0.32, C:0.27, G:0.10, T:0.32
Consensus pattern (28 bp):
ATATCTCACACACTAAGTGCCATTCTCA
Found at i:89774057 original size:40 final size:40
Alignment explanation
Indices: 89774013--89774097 Score: 118
Period size: 40 Copynumber: 2.1 Consensus size: 40
89774003 GTGCTGTACA
* *
89774013 TAGCCGAAGCTATC-TCAAATCGCACACTAAGTGCCAAATT
1 TAGCCGAAGCTA-CACCAAACCGCACACTAAGTGCCAAATT
* *
89774053 TAGCCGAAGCTACACCGAACCGCACACTAAGTGCCATATT
1 TAGCCGAAGCTACACCAAACCGCACACTAAGTGCCAAATT
89774093 TAGCC
1 TAGCC
89774098 AATATGTCAT
Statistics
Matches: 40, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
39 1 0.03
40 39 0.98
ACGTcount: A:0.33, C:0.31, G:0.16, T:0.20
Consensus pattern (40 bp):
TAGCCGAAGCTACACCAAACCGCACACTAAGTGCCAAATT
Found at i:89774877 original size:9 final size:9
Alignment explanation
Indices: 89774857--89774889 Score: 50
Period size: 9 Copynumber: 3.7 Consensus size: 9
89774847 TTTTAGTTAA
89774857 TTAACTCATT
1 TTAAC-CATT
89774867 TTAACCATT
1 TTAACCATT
89774876 TT-ACCATT
1 TTAACCATT
89774884 TTAACC
1 TTAACC
89774890 TTTAACAACA
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
8 8 0.36
9 9 0.41
10 5 0.23
ACGTcount: A:0.30, C:0.24, G:0.00, T:0.45
Consensus pattern (9 bp):
TTAACCATT
Found at i:89780486 original size:48 final size:48
Alignment explanation
Indices: 89780425--89780701 Score: 253
Period size: 48 Copynumber: 5.8 Consensus size: 48
89780415 GGGTTGATGA
* * * *
89780425 GATCCCATATAAGACCATATCTAGGATATGGCATCGGCATCGATATGT
1 GATCCCATGTAAGACCATATCTGGGACATGGCATTGGCATCGATATGT
* *
89780473 GATCCCGTGTAAGACCATGTCTGGGACATGGCATTGGCATC-ATTATGT
1 GATCCCATGTAAGACCATATCTGGGACATGGCATTGGCATCGA-TATGT
* **
89780521 GATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATATAA
1 GATCCCATGTAAGACCATATCTGGGACATGGCATTGGCATCGATATGT
* * * * *
89780569 GAACATCGTGTAAGACCATAGT-TGGG-CTATCGGC-TTCG-AT--ATGTGT
1 GATC-CCATGTAAGACCATA-TCTGGGAC-AT-GGCATTGGCATCGATATGT
* * *
89780615 GATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATTGATAAGT
1 GATCCCATGTAAGACCATATCTGGGACATGGCATTGGCATCGATATGT
* * * * * *
89780663 GGTCCCATATAAGACCATATCCGAGATAGGGCATTGGCA
1 GATCCCATGTAAGACCATATCTGGGACATGGCATTGGCA
89780702 CCCTAATATG
Statistics
Matches: 186, Mismatches: 31, Indels: 24
0.77 0.13 0.10
Matches are distributed among these distances:
44 4 0.02
45 21 0.11
46 9 0.05
47 1 0.01
48 125 0.67
49 22 0.12
50 4 0.02
ACGTcount: A:0.27, C:0.20, G:0.26, T:0.27
Consensus pattern (48 bp):
GATCCCATGTAAGACCATATCTGGGACATGGCATTGGCATCGATATGT
Found at i:89780634 original size:94 final size:96
Alignment explanation
Indices: 89780425--89780659 Score: 284
Period size: 94 Copynumber: 2.5 Consensus size: 96
89780415 GGGTTGATGA
* * * * * ** *
89780425 GATCCCATATAAGACCATATCTAGGATATGGCATCGGCATCGATATGTGATCCCGTGTAAGACCA
1 GATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATATAAGAACCCGTGTAAGACCA
*
89780490 TGTCTGGGACATGGCATTGGCATCATTATGT
66 TGTCTGGGACATGGCATTCGCATCATTATGT
*
89780521 GATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATATAAGAACATCGTGTAAGACC
1 GATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATATAAGAAC-CCGTGTAAGACC
*
89780586 ATAGT-TGGG-CTATCGGC-TTCG-AT-A-TGTGT
65 AT-GTCTGGGAC-AT-GGCATTCGCATCATTATGT
*
89780615 GATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATTGATA
1 GATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATA
89780660 AGTGGTCCCA
Statistics
Matches: 123, Mismatches: 12, Indels: 10
0.85 0.08 0.07
Matches are distributed among these distances:
94 48 0.39
95 1 0.01
96 47 0.38
97 22 0.18
98 5 0.04
ACGTcount: A:0.27, C:0.20, G:0.26, T:0.28
Consensus pattern (96 bp):
GATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATATAAGAACCCGTGTAAGACCA
TGTCTGGGACATGGCATTCGCATCATTATGT
Found at i:89788155 original size:49 final size:49
Alignment explanation
Indices: 89788096--89788221 Score: 155
Period size: 49 Copynumber: 2.6 Consensus size: 49
89788086 ATTAATGTAA
* *
89788096 ATGCCGTGTCCCAGACAGGTCTTACATTGACTTTCATATATCAAG-GACG
1 ATGCCATGTCCCAGACAGGTCTTACACTGACTTTCATATATC-AGTGACG
* * * * * * *
89788145 ATGCCATGTCCCAGGCAAGTCTTACACTGGCTTTTATCTATCGGTGTCG
1 ATGCCATGTCCCAGACAGGTCTTACACTGACTTTCATATATCAGTGACG
89788194 ATGCCATGTCCCAGACAGGTCTTACACT
1 ATGCCATGTCCCAGACAGGTCTTACACT
89788222 AACAACAAGC
Statistics
Matches: 65, Mismatches: 11, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
48 1 0.02
49 64 0.98
ACGTcount: A:0.23, C:0.27, G:0.21, T:0.29
Consensus pattern (49 bp):
ATGCCATGTCCCAGACAGGTCTTACACTGACTTTCATATATCAGTGACG
Found at i:89790008 original size:47 final size:49
Alignment explanation
Indices: 89789953--89790126 Score: 196
Period size: 49 Copynumber: 3.6 Consensus size: 49
89789943 GTGTAATGTT
*
89789953 GATGCCATGTCCCAGACATGGTCTTACATTAGCTCAT-ACA-T-TAAGTC
1 GATGCCATGTCCCAGACATGGTCTTACATT-GCTCATCACACTCTAAGCC
* * *
89790000 GATGCCATGTCCCAGACATGGTCTTACATTGACT-ATCAAACTCGAGGCC
1 GATGCCATGTCCCAGACATGGTCTTACATTG-CTCATCACACTCTAAGCC
* * **
89790049 GACGCCATGTCCCAGACATGGTCTTACACTGGCTC-TCACATCTCTCTGCC
1 GATGCCATGTCCCAGACATGGTCTTACA-TTGCTCATCACA-CTCTAAGCC
*
89790099 GATGCCATGTCCCAAACATGGTCTTACA
1 GATGCCATGTCCCAGACATGGTCTTACA
89790127 CTGACACATC
Statistics
Matches: 108, Mismatches: 12, Indels: 11
0.82 0.09 0.08
Matches are distributed among these distances:
46 3 0.03
47 34 0.31
48 1 0.01
49 36 0.33
50 34 0.31
ACGTcount: A:0.25, C:0.30, G:0.18, T:0.26
Consensus pattern (49 bp):
GATGCCATGTCCCAGACATGGTCTTACATTGCTCATCACACTCTAAGCC
Found at i:89790124 original size:99 final size:96
Alignment explanation
Indices: 89789956--89790131 Score: 246
Period size: 99 Copynumber: 1.8 Consensus size: 96
89789946 TAATGTTGAT
* * *
89789956 GCCATGTCCCAGACATGGTCTTACATTAGCTCATACATTAAGTCGATGCCATGTCCCAGACATGG
1 GCCATGTCCCAGACATGGTCTTACACTAGCTCATACATTAAGCCGATGCCATGTCCCAAACATGG
*
89790021 TCTTACATTGACTATCAAACTCGAGGCCGAC
66 TCTTACACTGACTATCAAACTCGAGGCCGAC
* **
89790052 GCCATGTCCCAGACATGGTCTTACACTGGCTC-TCACATCTCTCTGCCGATGCCATGTCCCAAAC
1 GCCATGTCCCAGACATGGTCTTACACTAGCTCAT-ACA--T-TAAGCCGATGCCATGTCCCAAAC
89790116 ATGGTCTTACACTGAC
62 ATGGTCTTACACTGAC
89790132 ACATCTCATA
Statistics
Matches: 69, Mismatches: 7, Indels: 5
0.85 0.09 0.06
Matches are distributed among these distances:
95 1 0.01
96 33 0.48
98 1 0.01
99 34 0.49
ACGTcount: A:0.24, C:0.31, G:0.18, T:0.26
Consensus pattern (96 bp):
GCCATGTCCCAGACATGGTCTTACACTAGCTCATACATTAAGCCGATGCCATGTCCCAAACATGG
TCTTACACTGACTATCAAACTCGAGGCCGAC
Found at i:89793752 original size:48 final size:48
Alignment explanation
Indices: 89793691--89793956 Score: 202
Period size: 48 Copynumber: 5.6 Consensus size: 48
89793681 AGGTTGATGA
* * *
89793691 GATCCCGTATAAGACCATATCTGGGATATGGCATCGGCATCGATATGT
1 GATCCCATGTAAGACCATATCTGGGATATGGCATTGGCATCGATATGT
* * * * *
89793739 GATCCCATGTAAGACCATGTCTGGGACATGACATTTGCATCGTTATGT
1 GATCCCATGTAAGACCATATCTGGGATATGGCATTGGCATCGATATGT
** * *
89793787 GATCCCATGTAAGACCATGCCTGGGACATGGCATTGGCATCGATATGA
1 GATCCCATGTAAGACCATATCTGGGATATGGCATTGGCATCGATATGT
* * * * * * *
89793835 AAACATCGTGTAAGACCATAGT-TGGGCTATTGGC-TTCG-AT--ATGTGT
1 GATC-CCATGTAAGACCATA-TCTGGGATA-TGGCATTGGCATCGATATGT
* * * * *
89793881 GATACCATGTAAGACCATGTTTGGGAAATGGCATTGGCATCGATAAGT
1 GATCCCATGTAAGACCATATCTGGGATATGGCATTGGCATCGATATGT
* * * *
89793929 GGTCTCATATAAGATCATAT-TCGGGATA
1 GATCCCATGTAAGACCATATCT-GGGATA
89793957 CAGCATTAGC
Statistics
Matches: 167, Mismatches: 42, Indels: 18
0.74 0.19 0.08
Matches are distributed among these distances:
44 5 0.03
45 20 0.12
46 7 0.04
47 1 0.01
48 110 0.66
49 20 0.12
50 4 0.02
ACGTcount: A:0.28, C:0.18, G:0.25, T:0.29
Consensus pattern (48 bp):
GATCCCATGTAAGACCATATCTGGGATATGGCATTGGCATCGATATGT
Found at i:89796795 original size:40 final size:40
Alignment explanation
Indices: 89796746--89796829 Score: 107
Period size: 40 Copynumber: 2.1 Consensus size: 40
89796736 GTGCTGTACA
* * *
89796746 TAGCTGAAGCTAT-CTCAAATCGCACATTAAGTGCCAAATT
1 TAGCCGAAGCTATAC-CAAACCGCACACTAAGTGCCAAATT
* *
89796786 TAGCCGAAGCTATACCGAACCGCACACTAAGTGCCATATT
1 TAGCCGAAGCTATACCAAACCGCACACTAAGTGCCAAATT
89796826 TAGC
1 TAGC
89796830 TGATATGTCA
Statistics
Matches: 38, Mismatches: 5, Indels: 2
0.84 0.11 0.04
Matches are distributed among these distances:
40 37 0.97
41 1 0.03
ACGTcount: A:0.33, C:0.26, G:0.17, T:0.24
Consensus pattern (40 bp):
TAGCCGAAGCTATACCAAACCGCACACTAAGTGCCAAATT
Found at i:89801208 original size:22 final size:21
Alignment explanation
Indices: 89801178--89801243 Score: 64
Period size: 19 Copynumber: 3.2 Consensus size: 21
89801168 TACAAATTAA
89801178 ATCTCCAAGATTACAAGATCAT
1 ATCTCCAAGATTAC-AGATCAT
* * *
89801200 ATCTTCAAGATTGCATATCAT
1 ATCTCCAAGATTACAGATCAT
* *
89801221 ATCT--AAGATTGCATATCAT
1 ATCTCCAAGATTACAGATCAT
89801240 ATCT
1 ATCT
89801244 AAGATTGTAT
Statistics
Matches: 41, Mismatches: 3, Indels: 3
0.87 0.06 0.06
Matches are distributed among these distances:
19 19 0.46
21 10 0.24
22 12 0.29
ACGTcount: A:0.36, C:0.20, G:0.09, T:0.35
Consensus pattern (21 bp):
ATCTCCAAGATTACAGATCAT
Found at i:89801230 original size:19 final size:19
Alignment explanation
Indices: 89801195--89801292 Score: 155
Period size: 19 Copynumber: 5.2 Consensus size: 19
89801185 AGATTACAAG
89801195 ATCATATCTTCAAGATTGCAT
1 ATCATATC-T-AAGATTGCAT
89801216 ATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGCAT
89801235 ATCATATCTAAGATTG--T
1 ATCATATCTAAGATTGCAT
*
89801252 ATCATATCTAATATTGCAT
1 ATCATATCTAAGATTGCAT
89801271 ATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGCAT
89801290 ATC
1 ATC
89801293 CTTAAAGATT
Statistics
Matches: 73, Mismatches: 2, Indels: 6
0.90 0.02 0.07
Matches are distributed among these distances:
17 16 0.22
19 48 0.66
20 1 0.01
21 8 0.11
ACGTcount: A:0.36, C:0.16, G:0.09, T:0.39
Consensus pattern (19 bp):
ATCATATCTAAGATTGCAT
Found at i:89801259 original size:36 final size:37
Alignment explanation
Indices: 89801195--89801292 Score: 144
Period size: 36 Copynumber: 2.6 Consensus size: 37
89801185 AGATTACAAG
89801195 ATCATATCTTCAAGATTGCATATCATATCTAAGATTGCAT
1 ATCATATC-T-AAGATTG-ATATCATATCTAAGATTGCAT
*
89801235 ATCATATCTAAGATTG-TATCATATCTAATATTGCAT
1 ATCATATCTAAGATTGATATCATATCTAAGATTGCAT
89801271 ATCATATCTAAGATTGCATATC
1 ATCATATCTAAGATTG-ATATC
89801293 CTTAAAGATT
Statistics
Matches: 55, Mismatches: 1, Indels: 6
0.89 0.02 0.10
Matches are distributed among these distances:
36 35 0.64
38 11 0.20
39 1 0.02
40 8 0.15
ACGTcount: A:0.36, C:0.16, G:0.09, T:0.39
Consensus pattern (37 bp):
ATCATATCTAAGATTGATATCATATCTAAGATTGCAT
Found at i:89803070 original size:14 final size:14
Alignment explanation
Indices: 89803051--89803084 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
89803041 GATTATATTA
*
89803051 TTACAAAGGAAACT
1 TTACAAAAGAAACT
*
89803065 TTACAAAAGAAAGT
1 TTACAAAAGAAACT
89803079 TTACAA
1 TTACAA
89803085 GGAGAGGATA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.53, C:0.12, G:0.12, T:0.24
Consensus pattern (14 bp):
TTACAAAAGAAACT
Found at i:89805008 original size:15 final size:15
Alignment explanation
Indices: 89804984--89805013 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
89804974 ATCCTAAAAA
*
89804984 TTCTATTTCTATTTT
1 TTCTAATTCTATTTT
89804999 TTCTAATTCTATTTT
1 TTCTAATTCTATTTT
89805014 CTTAGGACTC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.17, C:0.13, G:0.00, T:0.70
Consensus pattern (15 bp):
TTCTAATTCTATTTT
Found at i:89810502 original size:31 final size:31
Alignment explanation
Indices: 89810461--89810524 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
89810451 CCTTTTCATA
*
89810461 TTTCATATTTCATAACACTGGGCCGAAGCCT
1 TTTCAAATTTCATAACACTGGGCCGAAGCCT
**
89810492 TTTCAAATTTCATATTACTGGGCCGAAGCCT
1 TTTCAAATTTCATAACACTGGGCCGAAGCCT
89810523 TT
1 TT
89810525 ACTGTAAACG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.25, C:0.23, G:0.16, T:0.36
Consensus pattern (31 bp):
TTTCAAATTTCATAACACTGGGCCGAAGCCT
Found at i:89810766 original size:25 final size:24
Alignment explanation
Indices: 89810718--89810838 Score: 165
Period size: 24 Copynumber: 5.0 Consensus size: 24
89810708 TCTTTATCAT
*
89810718 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
89810743 ATAACTGGGGCA-AAGCCCTTTTTTA
1 ATAACTGGGGCATAAGCCC--TTTTA
89810768 ATAACTGGGGCATAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
89810792 ATAACTGGGGCATAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
**
89810816 ATAACTAAGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
89810839 GCACTTCCTC
Statistics
Matches: 89, Mismatches: 3, Indels: 9
0.88 0.03 0.09
Matches are distributed among these distances:
23 1 0.01
24 57 0.64
25 25 0.28
26 6 0.07
ACGTcount: A:0.29, C:0.21, G:0.19, T:0.31
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:89810912 original size:20 final size:20
Alignment explanation
Indices: 89810884--89810934 Score: 84
Period size: 20 Copynumber: 2.5 Consensus size: 20
89810874 GCATTTATGA
*
89810884 ACATCTCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
89810904 ACATATCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
*
89810924 ACATGTCATGT
1 ACATATCATGT
89810935 TTATCAAAAT
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 29 1.00
ACGTcount: A:0.31, C:0.22, G:0.12, T:0.35
Consensus pattern (20 bp):
ACATATCATGTGCATATCAT
Found at i:89811013 original size:25 final size:24
Alignment explanation
Indices: 89810971--89811018 Score: 60
Period size: 25 Copynumber: 2.0 Consensus size: 24
89810961 ATATATAAAC
* * *
89810971 CCTAGGGGTATAATGGTCACTTTTA
1 CCTAGGGGCAAAACGGTCA-TTTTA
89810996 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
89811019 CATGTTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
24 4 0.20
25 16 0.80
ACGTcount: A:0.25, C:0.19, G:0.25, T:0.31
Consensus pattern (24 bp):
CCTAGGGGCAAAACGGTCATTTTA
Found at i:89812238 original size:27 final size:27
Alignment explanation
Indices: 89812177--89812253 Score: 77
Period size: 27 Copynumber: 2.9 Consensus size: 27
89812167 GGCATATTCG
*
89812177 TCATTTTACCATACAGGGGTATTACGG
1 TCATTTTACCATACAGGGGTATTACGA
* *
89812204 TCACTTTACCCTACAGGGGCT-TTACGA
1 TCATTTTACCATACAGGGG-TATTACGA
* *
89812231 TCTTTTTACC-TAATAGGGGTATT
1 TCATTTTACCAT-ACAGGGGTATT
89812254 TTAGTCATTT
Statistics
Matches: 41, Mismatches: 6, Indels: 6
0.77 0.11 0.11
Matches are distributed among these distances:
26 2 0.05
27 38 0.93
28 1 0.02
ACGTcount: A:0.23, C:0.21, G:0.19, T:0.36
Consensus pattern (27 bp):
TCATTTTACCATACAGGGGTATTACGA
Found at i:89812324 original size:27 final size:27
Alignment explanation
Indices: 89812292--89812509 Score: 204
Period size: 27 Copynumber: 8.0 Consensus size: 27
89812282 TGGTAAATCA
*
89812292 ACAAACCAAAGGTATTTTAGTAATTTT
1 ACAAACCAAGGGTATTTTAGTAATTTT
** *
89812319 GTAAACCAATGGTATTTCTA-TAATTTTT
1 ACAAACCAAGGGTATTT-TAGTAA-TTTT
* * * *
89812347 AGAAAGTCAAGGGTATTTTTGTAACTTT
1 ACAAA-CCAAGGGTATTTTAGTAATTTT
** * * *
89812375 GTAAATCAGGGGTATTTTGGTAATTTT
1 ACAAACCAAGGGTATTTTAGTAATTTT
*** * *
89812402 ACAAATTGAGGGTATTTCAGTAATTTC
1 ACAAACCAAGGGTATTTTAGTAATTTT
*
89812429 ACAAACCAAGGGTATTTTGGTAATTTT
1 ACAAACCAAGGGTATTTTAGTAATTTT
* * *
89812456 ACAAACTAGGGGTATTTTGGTAATTTT
1 ACAAACCAAGGGTATTTTAGTAATTTT
89812483 ACAAACCAAGGGTATTTTAGTAATTTT
1 ACAAACCAAGGGTATTTTAGTAATTTT
89812510 GTAAATCGAG
Statistics
Matches: 154, Mismatches: 33, Indels: 8
0.79 0.17 0.04
Matches are distributed among these distances:
27 125 0.81
28 16 0.10
29 13 0.08
ACGTcount: A:0.33, C:0.09, G:0.18, T:0.40
Consensus pattern (27 bp):
ACAAACCAAGGGTATTTTAGTAATTTT
Found at i:89812475 original size:81 final size:81
Alignment explanation
Indices: 89812302--89812508 Score: 231
Period size: 81 Copynumber: 2.5 Consensus size: 81
89812292 ACAAACCAAA
* ** * * * *
89812302 GGTATTTTAGTAATTTTGTAAACCAATGGTATTTCTA-TAATTTTTAGAAAGTCAAGGGTATTTT
1 GGTATTTTGGTAATTTTACAAACCAAGGGTATTTC-AGTAA-TTTCACAAA-CCAAGGGTATTTT
* *
89812366 TGTAACTTTGTAAATCAGG
63 GGTAACTTTGTAAAACAGG
***
89812385 GGTATTTTGGTAATTTTACAAATTGAGGGTATTTCAGTAATTTCACAAACCAAGGGTATTTTGGT
1 GGTATTTTGGTAATTTTACAAACCAAGGGTATTTCAGTAATTTCACAAACCAAGGGTATTTTGGT
89812450 AA-TTT-TACAAACTAGG
66 AACTTTGTA-AAAC-AGG
*
89812466 GGTATTTTGGTAATTTTACAAACCAAGGGTATTTTAGTAATTT
1 GGTATTTTGGTAATTTTACAAACCAAGGGTATTTCAGTAATTT
89812509 TGTAAATCGA
Statistics
Matches: 105, Mismatches: 16, Indels: 8
0.81 0.12 0.06
Matches are distributed among these distances:
79 2 0.02
80 6 0.06
81 58 0.55
82 8 0.08
83 31 0.30
ACGTcount: A:0.31, C:0.08, G:0.19, T:0.42
Consensus pattern (81 bp):
GGTATTTTGGTAATTTTACAAACCAAGGGTATTTCAGTAATTTCACAAACCAAGGGTATTTTGGT
AACTTTGTAAAACAGG
Found at i:89812521 original size:27 final size:27
Alignment explanation
Indices: 89812302--89812550 Score: 187
Period size: 27 Copynumber: 9.1 Consensus size: 27
89812292 ACAAACCAAA
* * *
89812302 GGTATTTTAGTAATTTTGTAAACCAAT
1 GGTATTTTAGTAATTTTATAAATCAAG
*
89812329 GGTATTTCTA-TAATTTTTAGAAAGTCAAG
1 GGTATTT-TAGTAA-TTTTATAAA-TCAAG
* * * *
89812358 GGTATTTTTGTAACTTTGTAAATCAGG
1 GGTATTTTAGTAATTTTATAAATCAAG
* * **
89812385 GGTATTTTGGTAATTTTACAAATTGAG
1 GGTATTTTAGTAATTTTATAAATCAAG
* * * *
89812412 GGTATTTCAGTAATTTCACAAACCAAG
1 GGTATTTTAGTAATTTTATAAATCAAG
* * *
89812439 GGTATTTTGGTAATTTTACAAA-CTAGG
1 GGTATTTTAGTAATTTTATAAATC-AAG
* * *
89812466 GGTATTTTGGTAATTTTACAAACCAAG
1 GGTATTTTAGTAATTTTATAAATCAAG
* *
89812493 GGTATTTTAGTAATTTTGTAAATCGAG
1 GGTATTTTAGTAATTTTATAAATCAAG
*** * *
89812520 GGTAAAATAGTAATTCTGTAAATCAAG
1 GGTATTTTAGTAATTTTATAAATCAAG
89812547 GGTA
1 GGTA
89812551 AAACAGTAAT
Statistics
Matches: 179, Mismatches: 37, Indels: 12
0.79 0.16 0.05
Matches are distributed among these distances:
26 1 0.01
27 148 0.83
28 17 0.09
29 13 0.07
ACGTcount: A:0.33, C:0.08, G:0.20, T:0.39
Consensus pattern (27 bp):
GGTATTTTAGTAATTTTATAAATCAAG
Found at i:89812547 original size:54 final size:55
Alignment explanation
Indices: 89812501--89812618 Score: 157
Period size: 55 Copynumber: 2.2 Consensus size: 55
89812491 AGGGTATTTT
* * * * *
89812501 AGTAATTTTGTAAATCGAGGGT-AAAATAGTAATTCTGTAAATCAAGGGTAAAAC
1 AGTAATTCTATAAATCGACGGTAAAAAAAATAATTCTGTAAATCAAGGGTAAAAC
* *
89812555 AGTAATTCTATAAATCGACGGTAAAAAAAATAATTCTGTAAATCGAGCGTAAAAC
1 AGTAATTCTATAAATCGACGGTAAAAAAAATAATTCTGTAAATCAAGGGTAAAAC
*
89812610 GGTAATTCT
1 AGTAATTCT
89812619 GTAAGTCAAG
Statistics
Matches: 55, Mismatches: 8, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
54 19 0.35
55 36 0.65
ACGTcount: A:0.43, C:0.10, G:0.18, T:0.29
Consensus pattern (55 bp):
AGTAATTCTATAAATCGACGGTAAAAAAAATAATTCTGTAAATCAAGGGTAAAAC
Found at i:89812551 original size:27 final size:27
Alignment explanation
Indices: 89812501--89812636 Score: 155
Period size: 27 Copynumber: 5.0 Consensus size: 27
89812491 AGGGTATTTT
* *
89812501 AGTAATTTTGTAAATCGAGGGTAAAAT
1 AGTAATTCTGTAAATCGAGGGTAAAAC
*
89812528 AGTAATTCTGTAAATCAAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* * *
89812555 AGTAATTCTATAAATCGACGGTAAAAAA
1 AGTAATTCTGTAAATCGAGGGT-AAAAC
* *
89812583 AATAATTCTGTAAATCGAGCGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* * * *
89812610 GGTAATTCTGTAAGTCAAGGATAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
89812637 GGGGGTAAAA
Statistics
Matches: 90, Mismatches: 18, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
27 68 0.76
28 22 0.24
ACGTcount: A:0.44, C:0.10, G:0.18, T:0.27
Consensus pattern (27 bp):
AGTAATTCTGTAAATCGAGGGTAAAAC
Found at i:89812635 original size:55 final size:55
Alignment explanation
Indices: 89812501--89812635 Score: 148
Period size: 55 Copynumber: 2.5 Consensus size: 55
89812491 AGGGTATTTT
* * * * * *
89812501 AGTAATTTTGTAAATCGAGGGT-AAAATAGTAATTCTGTAAATCAAGGGTAAAAC
1 AGTAATTCTATAAATCGAAGGTAAAAAAAATAATTCTGTAAATCAAGCGTAAAAC
* *
89812555 AGTAATTCTATAAATCGACGGTAAAAAAAATAATTCTGTAAATCGAGCGTAAAAC
1 AGTAATTCTATAAATCGAAGGTAAAAAAAATAATTCTGTAAATCAAGCGTAAAAC
* * *
89812610 GGTAATTCTGTAAGTC-AAGGATAAAA
1 AGTAATTCTATAAATCGAAGG-TAAAA
89812636 CGGGGGTAAA
Statistics
Matches: 68, Mismatches: 11, Indels: 3
0.83 0.13 0.04
Matches are distributed among these distances:
54 22 0.32
55 46 0.68
ACGTcount: A:0.44, C:0.10, G:0.19, T:0.27
Consensus pattern (55 bp):
AGTAATTCTATAAATCGAAGGTAAAAAAAATAATTCTGTAAATCAAGCGTAAAAC
Found at i:89812724 original size:27 final size:27
Alignment explanation
Indices: 89812631--89812708 Score: 147
Period size: 27 Copynumber: 2.9 Consensus size: 27
89812621 AAGTCAAGGA
*
89812631 TAAAACGGGGGTAAAATGGTAATTATG
1 TAAATCGGGGGTAAAATGGTAATTATG
89812658 TAAATCGGGGGTAAAATGGTAATTATG
1 TAAATCGGGGGTAAAATGGTAATTATG
89812685 TAAATCGGGGGTAAAATGGTAATT
1 TAAATCGGGGGTAAAATGGTAATT
89812709 TTACAAGTCG
Statistics
Matches: 50, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
27 50 1.00
ACGTcount: A:0.38, C:0.04, G:0.29, T:0.28
Consensus pattern (27 bp):
TAAATCGGGGGTAAAATGGTAATTATG
Found at i:89812733 original size:27 final size:26
Alignment explanation
Indices: 89812703--89812792 Score: 108
Period size: 27 Copynumber: 3.3 Consensus size: 26
89812693 GGGTAAAATG
89812703 GTAATTTTACAAGTCGAAGGTATTTCA
1 GTAATTTTACAA-TCGAAGGTATTTCA
*
89812730 GTAATTTTACAAATCGAGGGTATTTCA
1 GTAATTTTAC-AATCGAAGGTATTTCA
* * * *
89812757 GTATTTTTACAAACTAAGCGTATTTCG
1 GTAATTTTACAATCGAAG-GTATTTCA
89812784 GTAATTTTA
1 GTAATTTTA
89812793 GTAAACTAAA
Statistics
Matches: 54, Mismatches: 7, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
26 5 0.09
27 47 0.87
28 2 0.04
ACGTcount: A:0.32, C:0.11, G:0.17, T:0.40
Consensus pattern (26 bp):
GTAATTTTACAATCGAAGGTATTTCA
Found at i:89812806 original size:27 final size:27
Alignment explanation
Indices: 89812703--89812807 Score: 90
Period size: 27 Copynumber: 3.9 Consensus size: 27
89812693 GGGTAAAATG
* *
89812703 GTAATTTTACAAGTCGAAG-GTATTTCA
1 GTAATTTTACAA-ACTAAGAGTATTTCA
* *
89812730 GTAATTTTACAAA-TCGAGGGTATTTCA
1 GTAATTTTACAAACT-AAGAGTATTTCA
* * *
89812757 GTATTTTTACAAACTAAGCGTATTTCG
1 GTAATTTTACAAACTAAGAGTATTTCA
*
89812784 GTAATTTTAGTAAACTAA-AGTATT
1 GTAATTTTA-CAAACTAAGAGTATT
89812808 CTAAACAGGG
Statistics
Matches: 64, Mismatches: 10, Indels: 8
0.78 0.12 0.10
Matches are distributed among these distances:
26 2 0.03
27 54 0.84
28 8 0.12
ACGTcount: A:0.34, C:0.10, G:0.16, T:0.39
Consensus pattern (27 bp):
GTAATTTTACAAACTAAGAGTATTTCA
Found at i:89813647 original size:42 final size:42
Alignment explanation
Indices: 89813588--89813673 Score: 172
Period size: 42 Copynumber: 2.0 Consensus size: 42
89813578 ACTTAATACC
89813588 AAAATTTTTGTTAAAGCCCAAGTTTGAACCCAAGATTTCTCT
1 AAAATTTTTGTTAAAGCCCAAGTTTGAACCCAAGATTTCTCT
89813630 AAAATTTTTGTTAAAGCCCAAGTTTGAACCCAAGATTTCTCT
1 AAAATTTTTGTTAAAGCCCAAGTTTGAACCCAAGATTTCTCT
89813672 AA
1 AA
89813674 CACTTCTCAA
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
42 44 1.00
ACGTcount: A:0.35, C:0.19, G:0.12, T:0.35
Consensus pattern (42 bp):
AAAATTTTTGTTAAAGCCCAAGTTTGAACCCAAGATTTCTCT
Found at i:89814839 original size:24 final size:22
Alignment explanation
Indices: 89814812--89814855 Score: 61
Period size: 22 Copynumber: 1.9 Consensus size: 22
89814802 ACTTGAGTTG
89814812 TAAACGCAAAGAAAAACTTCAACT
1 TAAAC-CAAA-AAAAACTTCAACT
*
89814836 TAAACTAAAAAAAACTTCAA
1 TAAACCAAAAAAAACTTCAA
89814856 TCAACCAACT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 11 0.58
23 3 0.16
24 5 0.26
ACGTcount: A:0.59, C:0.18, G:0.05, T:0.18
Consensus pattern (22 bp):
TAAACCAAAAAAAACTTCAACT
Found at i:89816540 original size:3 final size:3
Alignment explanation
Indices: 89816525--89816567 Score: 59
Period size: 3 Copynumber: 14.3 Consensus size: 3
89816515 TGAAGTGCAG
* * *
89816525 TAT TAT GAT TAT TAT TAC TAT TGT TAT TAT TAT TAT TAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
89816568 TATGTACAAG
Statistics
Matches: 34, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
3 34 1.00
ACGTcount: A:0.30, C:0.02, G:0.05, T:0.63
Consensus pattern (3 bp):
TAT
Found at i:89817664 original size:3 final size:3
Alignment explanation
Indices: 89817656--89817681 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
89817646 CCGTGAAACT
89817656 TCA TCA TCA TCA TCA TCA TCA TCA TC
1 TCA TCA TCA TCA TCA TCA TCA TCA TC
89817682 GTCGTCATCT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.31, C:0.35, G:0.00, T:0.35
Consensus pattern (3 bp):
TCA
Found at i:89818959 original size:78 final size:77
Alignment explanation
Indices: 89818857--89819008 Score: 259
Period size: 78 Copynumber: 2.0 Consensus size: 77
89818847 ACACTTTTTT
* * *
89818857 TTTTGACATGTCAACTCTCGTAATGAGATGGTCACGTATTATTATTTTTATCTCAAAGTTTGATT
1 TTTTGACATGTCAACCCTCGTAATGAGATGGTCACGTATTACTATTTTCATCTC-AAGTTTGATT
89818922 CCTATCTTAATTC
65 CCTATCTTAATTC
*
89818935 TTTTGACATGTCAACCCTCTTAATGAGATGGTCACGTATTACTATTTTCATCTCAAGTTTGATTC
1 TTTTGACATGTCAACCCTCGTAATGAGATGGTCACGTATTACTATTTTCATCTCAAGTTTGATTC
89819000 CTATCTTAA
66 CTATCTTAA
89819009 GCACTATTTT
Statistics
Matches: 70, Mismatches: 4, Indels: 1
0.93 0.05 0.01
Matches are distributed among these distances:
77 20 0.29
78 50 0.71
ACGTcount: A:0.26, C:0.18, G:0.12, T:0.43
Consensus pattern (77 bp):
TTTTGACATGTCAACCCTCGTAATGAGATGGTCACGTATTACTATTTTCATCTCAAGTTTGATTC
CTATCTTAATTC
Found at i:89819453 original size:45 final size:45
Alignment explanation
Indices: 89819379--89819535 Score: 190
Period size: 45 Copynumber: 3.4 Consensus size: 45
89819369 TTATAAAATC
**
89819379 AAATAATTATTTCGAATATCATTATTATTTTTATATGT-ATAATATTTT
1 AAATAATTATTTC-AA-AT-ACCATTATTTTTATATGTGA-AATATTTT
* *
89819427 AAATAATTATTCCAAATACCATTATTTTTATATGTGAAATATTTC
1 AAATAATTATTTCAAATACCATTATTTTTATATGTGAAATATTTT
* * * * *
89819472 AATTAACTATTTCAAATATCACTATTATTATATGTGAAATATTTT
1 AAATAATTATTTCAAATACCATTATTTTTATATGTGAAATATTTT
89819517 AAATAATTATTTCAAATAC
1 AAATAATTATTTCAAATAC
89819536 ACACACAAAA
Statistics
Matches: 94, Mismatches: 14, Indels: 5
0.83 0.12 0.04
Matches are distributed among these distances:
45 77 0.82
46 3 0.03
47 2 0.02
48 12 0.13
ACGTcount: A:0.41, C:0.08, G:0.04, T:0.47
Consensus pattern (45 bp):
AAATAATTATTTCAAATACCATTATTTTTATATGTGAAATATTTT
Found at i:89823347 original size:24 final size:24
Alignment explanation
Indices: 89823320--89823370 Score: 93
Period size: 24 Copynumber: 2.1 Consensus size: 24
89823310 ATGAAATGGC
89823320 AAAAGTCGAAATGCCGAAAAGCTG
1 AAAAGTCGAAATGCCGAAAAGCTG
*
89823344 AAAAGTTGAAATGCCGAAAAGCTG
1 AAAAGTCGAAATGCCGAAAAGCTG
89823368 AAA
1 AAA
89823371 GTTGGGCTAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.49, C:0.14, G:0.24, T:0.14
Consensus pattern (24 bp):
AAAAGTCGAAATGCCGAAAAGCTG
Found at i:89823491 original size:19 final size:19
Alignment explanation
Indices: 89823467--89823503 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
89823457 ACTTGGGTTG
89823467 AGAATTGGCCAAATGGGTC
1 AGAATTGGCCAAATGGGTC
*
89823486 AGAATTGGCTAAATGGGT
1 AGAATTGGCCAAATGGGT
89823504 TGATGGGCTG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.32, C:0.11, G:0.32, T:0.24
Consensus pattern (19 bp):
AGAATTGGCCAAATGGGTC
Found at i:89823626 original size:29 final size:28
Alignment explanation
Indices: 89823580--89823699 Score: 127
Period size: 29 Copynumber: 4.2 Consensus size: 28
89823570 TGTGAGCATG
*
89823580 CATAT-AATATGATTTGGGCCTAATAGGC
1 CATATGAATATGA-TTGGGCCTAATGGGC
* *
89823608 CATATGAATGTGTATTGGGCCTAGTGGGC
1 CATATGAATATG-ATTGGGCCTAATGGGC
* *
89823637 CATAAGAATATGAACTGGGCC-AGATGGGC
1 CATATGAATATG-ATTGGGCCTA-ATGGGC
* *
89823666 CATATGAATAAGATTGGGCCTAGTGGGC
1 CATATGAATATGATTGGGCCTAATGGGC
89823694 CATATG
1 CATATG
89823700 CATGTATGTA
Statistics
Matches: 76, Mismatches: 12, Indels: 8
0.79 0.12 0.08
Matches are distributed among these distances:
28 24 0.32
29 51 0.67
30 1 0.01
ACGTcount: A:0.29, C:0.15, G:0.29, T:0.27
Consensus pattern (28 bp):
CATATGAATATGATTGGGCCTAATGGGC
Found at i:89823657 original size:58 final size:57
Alignment explanation
Indices: 89823585--89823697 Score: 156
Period size: 58 Copynumber: 2.0 Consensus size: 57
89823575 GCATGCATAT
** **
89823585 AATATGATTTGGGCCTA-ATAGGCCATATGAATGTGTATTGGGCCTAGTGGGCCATAAG
1 AATATGAACTGGGCC-AGATAGGCCATATGAATAAG-ATTGGGCCTAGTGGGCCATAAG
*
89823643 AATATGAACTGGGCCAGATGGGCCATATGAATAAGATTGGGCCTAGTGGGCCATA
1 AATATGAACTGGGCCAGATAGGCCATATGAATAAGATTGGGCCTAGTGGGCCATA
89823698 TGCATGTATG
Statistics
Matches: 49, Mismatches: 5, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
57 21 0.43
58 28 0.57
ACGTcount: A:0.29, C:0.15, G:0.30, T:0.26
Consensus pattern (57 bp):
AATATGAACTGGGCCAGATAGGCCATATGAATAAGATTGGGCCTAGTGGGCCATAAG
Found at i:89825592 original size:15 final size:15
Alignment explanation
Indices: 89825572--89825602 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
89825562 AGGTTTAGGT
89825572 AGCTGGCTTTCCAAC
1 AGCTGGCTTTCCAAC
*
89825587 AGCTGGTTTTCCAAC
1 AGCTGGCTTTCCAAC
89825602 A
1 A
89825603 AGGTTTGGGC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.23, C:0.29, G:0.19, T:0.29
Consensus pattern (15 bp):
AGCTGGCTTTCCAAC
Found at i:89858528 original size:31 final size:31
Alignment explanation
Indices: 89858490--89858551 Score: 97
Period size: 31 Copynumber: 2.0 Consensus size: 31
89858480 AGGTCCAAGC
* *
89858490 GGTGGTGGCATGATTCAATTCACCAACTTTT
1 GGTGGTGGCATGATTAAATCCACCAACTTTT
*
89858521 GGTGGTGGCATGATTAAATCCACTAACTTTT
1 GGTGGTGGCATGATTAAATCCACCAACTTTT
89858552 AGGCTATTTG
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
31 28 1.00
ACGTcount: A:0.24, C:0.18, G:0.23, T:0.35
Consensus pattern (31 bp):
GGTGGTGGCATGATTAAATCCACCAACTTTT
Found at i:89861273 original size:20 final size:20
Alignment explanation
Indices: 89861248--89861348 Score: 78
Period size: 20 Copynumber: 5.0 Consensus size: 20
89861238 TAAATGCGTT
* *
89861248 CAGGGGTACCGAAGTACAAG
1 CAGGGGTACAGAAGTACAAA
* * * *
89861268 CAGGGGCACATATGTACAAT
1 CAGGGGTACAGAAGTACAAA
*
89861288 CAGGGGTACTGAAGTACAAA
1 CAGGGGTACAGAAGTACAAA
* * * **
89861308 CAGGGGCACATATGTGGAAA
1 CAGGGGTACAGAAGTACAAA
89861328 CAGGGGTATCA-AAGTACAAA
1 CAGGGGTA-CAGAAGTACAAA
89861348 C
1 C
89861349 CATGGTATGT
Statistics
Matches: 60, Mismatches: 20, Indels: 2
0.73 0.24 0.02
Matches are distributed among these distances:
20 58 0.97
21 2 0.03
ACGTcount: A:0.38, C:0.18, G:0.30, T:0.15
Consensus pattern (20 bp):
CAGGGGTACAGAAGTACAAA
Found at i:89861302 original size:40 final size:40
Alignment explanation
Indices: 89861247--89861449 Score: 205
Period size: 40 Copynumber: 5.1 Consensus size: 40
89861237 GTAAATGCGT
* * *
89861247 TCAGGGGTACCGAAGTACAAGCAGGGGCACATATGTACAA
1 TCAGGGGTACTGAAGTACAAACAGGGGCACATATGTGCAA
*
89861287 TCAGGGGTACTGAAGTACAAACAGGGGCACATATGTGGAA
1 TCAGGGGTACTGAAGTACAAACAGGGGCACATATGTGCAA
* * * * **
89861327 ACAGGGGTA-TCAAAGTACAAACCA-TGGTATGTATGTGCAA
1 TCAGGGGTACT-GAAGTACAAA-CAGGGGCACATATGTGCAA
* * * *
89861367 ACAGGGGTA-TCGATGTACAAATAGGAGCACATATGTGCAA
1 TCAGGGGTACT-GAAGTACAAACAGGGGCACATATGTGCAA
* * *
89861407 TTAGGGGTACCGAAGTACAAACAGGGGCACGTATGTGCAA
1 TCAGGGGTACTGAAGTACAAACAGGGGCACATATGTGCAA
89861447 TCA
1 TCA
89861450 TTCAATAAAC
Statistics
Matches: 132, Mismatches: 27, Indels: 8
0.79 0.16 0.05
Matches are distributed among these distances:
39 2 0.02
40 128 0.97
41 2 0.02
ACGTcount: A:0.35, C:0.17, G:0.29, T:0.19
Consensus pattern (40 bp):
TCAGGGGTACTGAAGTACAAACAGGGGCACATATGTGCAA
Found at i:89861346 original size:80 final size:80
Alignment explanation
Indices: 89861248--89861449 Score: 237
Period size: 80 Copynumber: 2.5 Consensus size: 80
89861238 TAAATGCGTT
* * *
89861248 CAGGGGTACCGAAGTACAAGCAGGGGCACATATGTACAATCAGGGGTA-CTGAAGTACAAACAGG
1 CAGGGGTACCGAAGTACAAACAGGGGCACGTATGTGCAATCAGGGGTATC-GAAGTACAAACAGG
* *
89861312 GGCACATATGTGGAAA
65 AGCACATATGTGCAAA
* * * * * * * *
89861328 CAGGGGTATCAAAGTACAAACCA-TGGTATGTATGTGCAAACAGGGGTATCGATGTACAAATAGG
1 CAGGGGTACCGAAGTACAAA-CAGGGGCACGTATGTGCAATCAGGGGTATCGAAGTACAAACAGG
*
89861392 AGCACATATGTGCAAT
65 AGCACATATGTGCAAA
*
89861408 TAGGGGTACCGAAGTACAAACAGGGGCACGTATGTGCAATCA
1 CAGGGGTACCGAAGTACAAACAGGGGCACGTATGTGCAATCA
89861450 TTCAATAAAC
Statistics
Matches: 98, Mismatches: 21, Indels: 6
0.78 0.17 0.05
Matches are distributed among these distances:
79 2 0.02
80 93 0.95
81 3 0.03
ACGTcount: A:0.36, C:0.17, G:0.29, T:0.18
Consensus pattern (80 bp):
CAGGGGTACCGAAGTACAAACAGGGGCACGTATGTGCAATCAGGGGTATCGAAGTACAAACAGGA
GCACATATGTGCAAA
Found at i:89861382 original size:20 final size:20
Alignment explanation
Indices: 89861248--89861387 Score: 65
Period size: 20 Copynumber: 7.0 Consensus size: 20
89861238 TAAATGCGTT
* * *
89861248 CAGGGGTACCGAAGTACAAG
1 CAGGGGTATCGATGTACAAA
* * *
89861268 CAGGGGCA-CATATGTACAAT
1 CAGGGGTATC-GATGTACAAA
*
89861288 CAGGGGTA-CTGAAGTACAAA
1 CAGGGGTATC-GATGTACAAA
* * **
89861308 CAGGGGCA-CATATGTGGAAA
1 CAGGGGTATC-GATGTACAAA
* *
89861328 CAGGGGTATCAAAGTACAAA
1 CAGGGGTATCGATGTACAAA
* *
89861348 CCA-TGGTAT-GTATGTGCAAA
1 -CAGGGGTATCG-ATGTACAAA
89861368 CAGGGGTATCGATGTACAAA
1 CAGGGGTATCGATGTACAAA
89861388 TAGGAGCACA
Statistics
Matches: 88, Mismatches: 26, Indels: 12
0.70 0.21 0.10
Matches are distributed among these distances:
19 3 0.03
20 81 0.92
21 4 0.05
ACGTcount: A:0.36, C:0.16, G:0.29, T:0.18
Consensus pattern (20 bp):
CAGGGGTATCGATGTACAAA
Found at i:89865449 original size:31 final size:29
Alignment explanation
Indices: 89865414--89865488 Score: 73
Period size: 28 Copynumber: 2.6 Consensus size: 29
89865404 TAAAAATTAA
89865414 TTTTATCATAATGAAATATAT-TTTATATATT
1 TTTTATCAT-AT-AAATATATATTTA-ATATT
* *
89865445 TTTTATTATATAATTATATATTTAATA-T
1 TTTTATCATATAAATATATATTTAATATT
* *
89865473 TTTAATTATATAAATA
1 TTTTATCATATAAATA
89865489 AAATAATTAT
Statistics
Matches: 39, Mismatches: 4, Indels: 5
0.81 0.08 0.10
Matches are distributed among these distances:
28 15 0.38
29 10 0.26
30 6 0.15
31 8 0.21
ACGTcount: A:0.41, C:0.01, G:0.01, T:0.56
Consensus pattern (29 bp):
TTTTATCATATAAATATATATTTAATATT
Found at i:89865478 original size:20 final size:22
Alignment explanation
Indices: 89865436--89865484 Score: 66
Period size: 22 Copynumber: 2.3 Consensus size: 22
89865426 GAAATATATT
**
89865436 TTATATATTTTTTATTATATAA
1 TTATATATTTAATATTATATAA
89865458 TTATATATTTAATATT-T-TAA
1 TTATATATTTAATATTATATAA
89865478 TTATATA
1 TTATATA
89865485 AATAAAATAA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
20 10 0.40
21 1 0.04
22 14 0.56
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (22 bp):
TTATATATTTAATATTATATAA
Found at i:89865508 original size:17 final size:17
Alignment explanation
Indices: 89865475--89865507 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
89865465 TTTAATATTT
89865475 TAATTATATAAATAAAA
1 TAATTATATAAATAAAA
*
89865492 TAATTAT-TAATTAAAA
1 TAATTATATAAATAAAA
89865508 AGATAAACTA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 8 0.53
17 7 0.47
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (17 bp):
TAATTATATAAATAAAA
Found at i:89870148 original size:29 final size:29
Alignment explanation
Indices: 89870101--89870159 Score: 93
Period size: 29 Copynumber: 2.0 Consensus size: 29
89870091 TATATTCACG
89870101 TGGCCCATTAGGCCTAAATCACATTTATA
1 TGGCCCATTAGGCCTAAATCACATTTATA
*
89870130 TGGCCCTTTAGGCAC-AAATCACATTTATA
1 TGGCCCATTAGGC-CTAAATCACATTTATA
89870159 T
1 T
89870160 TCATGCTCAC
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
29 27 0.96
30 1 0.04
ACGTcount: A:0.31, C:0.24, G:0.14, T:0.32
Consensus pattern (29 bp):
TGGCCCATTAGGCCTAAATCACATTTATA
Found at i:89884967 original size:14 final size:14
Alignment explanation
Indices: 89884948--89884975 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
89884938 ATTCTCCAAT
89884948 TATAATAAATATGA
1 TATAATAAATATGA
89884962 TATAATAAATATGA
1 TATAATAAATATGA
89884976 GGAATAATAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.57, C:0.00, G:0.07, T:0.36
Consensus pattern (14 bp):
TATAATAAATATGA
Found at i:89886743 original size:33 final size:32
Alignment explanation
Indices: 89886706--89886768 Score: 99
Period size: 33 Copynumber: 1.9 Consensus size: 32
89886696 AGAAAGCATT
*
89886706 TTTTTTTTGTAGAAAACATTTTTTCAAAAAGTG
1 TTTTTTTTGTAGAAAAC-GTTTTTCAAAAAGTG
*
89886739 TTTTTTTTGTAGAAAGCGTTTTTCAAAAAG
1 TTTTTTTTGTAGAAAACGTTTTTCAAAAAG
89886769 GCTTTTGCAA
Statistics
Matches: 28, Mismatches: 2, Indels: 1
0.90 0.06 0.03
Matches are distributed among these distances:
32 12 0.43
33 16 0.57
ACGTcount: A:0.32, C:0.06, G:0.14, T:0.48
Consensus pattern (32 bp):
TTTTTTTTGTAGAAAACGTTTTTCAAAAAGTG
Found at i:89891278 original size:40 final size:40
Alignment explanation
Indices: 89891234--89891418 Score: 226
Period size: 40 Copynumber: 4.6 Consensus size: 40
89891224 CGACAAATCA
* * *
89891234 GCTATATGTGGCACTCAGTGTGCGATTCGAGATAGCTTCG
1 GCTATATATGGCACTTAGTGTGCGATTCGACATAGCTTCG
* * * *
89891274 GCTATATATGGCGCTTAGTGTGTGATTCGACATATCTTTG
1 GCTATATATGGCACTTAGTGTGCGATTCGACATAGCTTCG
*
89891314 GCTATATATGGCACTTAGTGTGCGATTCGACATAGCTTTG
1 GCTATATATGGCACTTAGTGTGCGATTCGACATAGCTTCG
* * *
89891354 GCTATATATGACACTTAGTGTGCGAGATTTGAGATAGCTTCG
1 GCTATATATGGCACTTAGTGTGC--GATTCGACATAGCTTCG
* * *
89891396 GCTATGTACGACACTTAGTGTGC
1 GCTATATATGGCACTTAGTGTGC
89891419 AAGACATCGA
Statistics
Matches: 127, Mismatches: 16, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
40 92 0.72
42 35 0.28
ACGTcount: A:0.22, C:0.17, G:0.26, T:0.34
Consensus pattern (40 bp):
GCTATATATGGCACTTAGTGTGCGATTCGACATAGCTTCG
Found at i:89892151 original size:56 final size:56
Alignment explanation
Indices: 89892057--89892170 Score: 192
Period size: 56 Copynumber: 2.0 Consensus size: 56
89892047 TTGTTGAGTA
* *
89892057 TGAGTAATTTTGGTGATTGATGCAGATGTGCTTCATATGTATTTAGCTATGAGATT
1 TGAGCAATTTTGGTGATTGATGCAGATGTGCTTCATATGTATTTAGCCATGAGATT
* *
89892113 TGAGCAATTTTGGTGATTGATGCAGATGTGTTTGATATGTATTTAGCCATGAGATT
1 TGAGCAATTTTGGTGATTGATGCAGATGTGCTTCATATGTATTTAGCCATGAGATT
89892169 TG
1 TG
89892171 GCCTGATAAT
Statistics
Matches: 54, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
56 54 1.00
ACGTcount: A:0.25, C:0.07, G:0.26, T:0.42
Consensus pattern (56 bp):
TGAGCAATTTTGGTGATTGATGCAGATGTGCTTCATATGTATTTAGCCATGAGATT
Found at i:89898383 original size:42 final size:40
Alignment explanation
Indices: 89898225--89898366 Score: 248
Period size: 40 Copynumber: 3.5 Consensus size: 40
89898215 CGACAAATTA
* * *
89898225 GCTATATGTGGCACTTAGTGTGTGATTCGACATAGCTTCG
1 GCTATATATGGCACTTAGTGTGCGATTCGACATAGCTCCG
*
89898265 GCTATATATGGCACTTAATGTGCGATTCGACATAGCTCCG
1 GCTATATATGGCACTTAGTGTGCGATTCGACATAGCTCCG
89898305 GCTATATATGGCACTTAGTGTGCGATTCGACATAGCTCCG
1 GCTATATATGGCACTTAGTGTGCGATTCGACATAGCTCCG
89898345 GCTATATATGGCACTTAGTGTG
1 GCTATATATGGCACTTAGTGTG
89898367 TGAGATTTGA
Statistics
Matches: 97, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
40 97 1.00
ACGTcount: A:0.23, C:0.20, G:0.25, T:0.32
Consensus pattern (40 bp):
GCTATATATGGCACTTAGTGTGCGATTCGACATAGCTCCG
Found at i:89899727 original size:23 final size:21
Alignment explanation
Indices: 89899681--89899724 Score: 52
Period size: 22 Copynumber: 2.0 Consensus size: 21
89899671 CAGTATTCCC
*
89899681 TATAGGTTTGGCACGGCCTGG
1 TATAGGTTTGGCACGGCATGG
89899702 TATACGGTTTGGACACGGGCATG
1 TATA-GGTTTGG-CAC-GGCATG
89899725 TATGGCCATT
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
21 4 0.21
22 7 0.37
23 3 0.16
24 5 0.26
ACGTcount: A:0.18, C:0.18, G:0.36, T:0.27
Consensus pattern (21 bp):
TATAGGTTTGGCACGGCATGG
Found at i:89901242 original size:17 final size:18
Alignment explanation
Indices: 89901204--89901244 Score: 57
Period size: 17 Copynumber: 2.3 Consensus size: 18
89901194 AGGCCAATTT
*
89901204 GGGCAGTGTGGGCCACAT
1 GGGCAGTGTGGGCCACAG
*
89901222 GGGC-GTGTGGGCCATAG
1 GGGCAGTGTGGGCCACAG
89901239 GGGCAG
1 GGGCAG
89901245 GCTGCATAGG
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
17 15 0.75
18 5 0.25
ACGTcount: A:0.15, C:0.20, G:0.51, T:0.15
Consensus pattern (18 bp):
GGGCAGTGTGGGCCACAG
Found at i:89902543 original size:25 final size:25
Alignment explanation
Indices: 89902472--89902545 Score: 71
Period size: 25 Copynumber: 3.0 Consensus size: 25
89902462 AGTATTCTAC
**
89902472 ACTGT-GATAAGTTTAAACTGAAAAT
1 ACTGTAGAT-AGTTTACTCTGAAAAT
* *
89902497 ACTGTAGATAGTTTATTCTGAAACT
1 ACTGTAGATAGTTTACTCTGAAAAT
*
89902522 ACTGTA-AGTAGTTTACTGTGAAAA
1 ACTGTAGA-TAGTTTACTCTGAAAA
89902546 CAATGTAGGC
Statistics
Matches: 41, Mismatches: 6, Indels: 4
0.80 0.12 0.08
Matches are distributed among these distances:
24 1 0.02
25 37 0.90
26 3 0.07
ACGTcount: A:0.38, C:0.09, G:0.18, T:0.35
Consensus pattern (25 bp):
ACTGTAGATAGTTTACTCTGAAAAT
Found at i:89902591 original size:17 final size:17
Alignment explanation
Indices: 89902569--89902601 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
89902559 GTATACTAAA
*
89902569 ACTGTAGTAAAACTGAG
1 ACTGTAGCAAAACTGAG
89902586 ACTGTAGCAAAACTGA
1 ACTGTAGCAAAACTGA
89902602 TAGAGATTGC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.42, C:0.15, G:0.21, T:0.21
Consensus pattern (17 bp):
ACTGTAGCAAAACTGAG
Found at i:89912658 original size:27 final size:27
Alignment explanation
Indices: 89912600--89912710 Score: 127
Period size: 27 Copynumber: 4.1 Consensus size: 27
89912590 AGCACGATTG
* *
89912600 CCAGAACAGATAA-TGTGACAGAGTCA
1 CCAGAACAGATAATTGTGGCAGAGCCA
* * *
89912626 CAAGAACAGATAATTATGGTAGAGCCA
1 CCAGAACAGATAATTGTGGCAGAGCCA
89912653 CCAGAACAGAT-ATATGTGGCAGAGCCA
1 CCAGAACAGATAAT-TGTGGCAGAGCCA
* * *
89912680 CCAGATCAGATAGTTGTGGCATAGCCA
1 CCAGAACAGATAATTGTGGCAGAGCCA
89912707 CCAG
1 CCAG
89912711 GACGCTTCCT
Statistics
Matches: 71, Mismatches: 11, Indels: 5
0.82 0.13 0.06
Matches are distributed among these distances:
26 14 0.20
27 56 0.79
28 1 0.01
ACGTcount: A:0.38, C:0.21, G:0.24, T:0.17
Consensus pattern (27 bp):
CCAGAACAGATAATTGTGGCAGAGCCA
Found at i:89912690 original size:54 final size:53
Alignment explanation
Indices: 89912600--89912710 Score: 141
Period size: 54 Copynumber: 2.1 Consensus size: 53
89912590 AGCACGATTG
* *
89912600 CCAGAACAGATAATGTGACAGAGTCACAAGAACAGATAATTATGGTAGAGCCA
1 CCAGAACAGATAATGTGACAGAGCCACAAGAACAGATAATTATGGCAGAGCCA
* * * * * *
89912653 CCAGAACAGATATATGTGGCAGAGCCACCAGATCAGATAGTTGTGGCATAGCCA
1 CCAGAACAGATA-ATGTGACAGAGCCACAAGAACAGATAATTATGGCAGAGCCA
89912707 CCAG
1 CCAG
89912711 GACGCTTCCT
Statistics
Matches: 49, Mismatches: 8, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
53 12 0.24
54 37 0.76
ACGTcount: A:0.38, C:0.21, G:0.24, T:0.17
Consensus pattern (53 bp):
CCAGAACAGATAATGTGACAGAGCCACAAGAACAGATAATTATGGCAGAGCCA
Found at i:89914140 original size:25 final size:25
Alignment explanation
Indices: 89914112--89914165 Score: 90
Period size: 25 Copynumber: 2.2 Consensus size: 25
89914102 AACTCTTGCT
89914112 CCTTGATCAGCTCCTAAATCTTCTC
1 CCTTGATCAGCTCCTAAATCTTCTC
* *
89914137 CCTTTATCAGCTCGTAAATCTTCTC
1 CCTTGATCAGCTCCTAAATCTTCTC
89914162 CCTT
1 CCTT
89914166 ATCTCCTCCT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
25 27 1.00
ACGTcount: A:0.19, C:0.35, G:0.07, T:0.39
Consensus pattern (25 bp):
CCTTGATCAGCTCCTAAATCTTCTC
Found at i:89919969 original size:47 final size:47
Alignment explanation
Indices: 89919884--89920471 Score: 967
Period size: 47 Copynumber: 12.6 Consensus size: 47
89919874 GTATATTTGA
89919884 ATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTG
1 ATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTG
*
89919933 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTG
1 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
* *
89919980 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGTCGATGTG
1 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
89920027 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
1 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
* *
89920074 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTA
1 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
*
89920121 ATGAATGTGAAA--G------TGTGATAAGGCCTAATAGCCGATGTG
1 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
89920160 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
1 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
89920207 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
1 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
*
89920254 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTG
1 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
89920301 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
1 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
89920348 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
1 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
* * * * * *
89920395 ATGAATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTG
1 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
* *
89920442 ATGGATGTGAAAGTGTATAAATGTGATAAG
1 ATGAATGTGAAAGTGTATATATGTGATAAG
89920472 TCCCGAAGGG
Statistics
Matches: 511, Mismatches: 20, Indels: 18
0.93 0.04 0.03
Matches are distributed among these distances:
39 37 0.07
41 1 0.00
45 1 0.00
47 457 0.89
49 15 0.03
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.29
Consensus pattern (47 bp):
ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
Found at i:89920689 original size:37 final size:37
Alignment explanation
Indices: 89920590--89920697 Score: 162
Period size: 37 Copynumber: 2.9 Consensus size: 37
89920580 CCGAGCTCTA
* * *
89920590 AAGACCCGATGACTACGTGTGGAGAGTATGTTCGGGT
1 AAGACCCGATGACTACGTGTGGAGATTTTGTCCGGGT
89920627 AAGACCCGATGACTACGTGTGGAGATTTTGTCCGGGT
1 AAGACCCGATGACTACGTGTGGAGATTTTGTCCGGGT
* * *
89920664 AAGACCCGATAACTTCGTGTGGAGATTTCGTCCG
1 AAGACCCGATGACTACGTGTGGAGATTTTGTCCG
89920698 AGCTAAAGGT
Statistics
Matches: 65, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
37 65 1.00
ACGTcount: A:0.23, C:0.19, G:0.31, T:0.26
Consensus pattern (37 bp):
AAGACCCGATGACTACGTGTGGAGATTTTGTCCGGGT
Found at i:89922204 original size:40 final size:40
Alignment explanation
Indices: 89921961--89922192 Score: 374
Period size: 40 Copynumber: 5.8 Consensus size: 40
89921951 GAGAATTGAG
89921961 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
89922001 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
*
89922041 AGTGATATATCCGGGCTAAGTCTCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* *
89922081 AGTGATATATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* ** *
89922121 AGTGATATATCCGTGCTAAACCCCAAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* * *
89922161 GGTGTTATATCCGGGCTAGGTCCCGAAGAGCA
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCA
89922193 ATCATGCTGG
Statistics
Matches: 175, Mismatches: 17, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
40 175 1.00
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
Found at i:89926031 original size:47 final size:47
Alignment explanation
Indices: 89925946--89926533 Score: 967
Period size: 47 Copynumber: 12.6 Consensus size: 47
89925936 GTATATTTGA
89925946 ATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTG
1 ATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTG
*
89925995 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTG
1 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
*
89926042 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTG
1 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
89926089 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
1 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
* *
89926136 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTA
1 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
*
89926183 ATGAATGTGAAA--G------TGTGATAAGGCCTAATAGCCGATGTG
1 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
89926222 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
1 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
89926269 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
1 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
*
89926316 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTG
1 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
*
89926363 ATGAATGTAAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
1 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
89926410 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
1 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
* * * * * *
89926457 ATGAATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTG
1 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
* *
89926504 ATGGATGTGAAAGTGTATAAATGTGATAAG
1 ATGAATGTGAAAGTGTATATATGTGATAAG
89926534 TCCCGAAGGG
Statistics
Matches: 511, Mismatches: 20, Indels: 18
0.93 0.04 0.03
Matches are distributed among these distances:
39 37 0.07
41 1 0.00
45 1 0.00
47 457 0.89
49 15 0.03
ACGTcount: A:0.33, C:0.09, G:0.29, T:0.29
Consensus pattern (47 bp):
ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
Found at i:89926751 original size:37 final size:37
Alignment explanation
Indices: 89926652--89926759 Score: 171
Period size: 37 Copynumber: 2.9 Consensus size: 37
89926642 CTGAGCTCTA
* *
89926652 AAGACCCGATGACTACGTGTGGAGAGTATGTCCGGGT
1 AAGACCCGATGACTACGTGTGGAGATTTTGTCCGGGT
89926689 AAGACCCGATGACTACGTGTGGAGATTTTGTCCGGGT
1 AAGACCCGATGACTACGTGTGGAGATTTTGTCCGGGT
* * *
89926726 AAGACCCGATAACTTCGTGTGGAGATTTCGTCCG
1 AAGACCCGATGACTACGTGTGGAGATTTTGTCCG
89926760 AGCTAAAGGT
Statistics
Matches: 66, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
37 66 1.00
ACGTcount: A:0.23, C:0.20, G:0.31, T:0.25
Consensus pattern (37 bp):
AAGACCCGATGACTACGTGTGGAGATTTTGTCCGGGT
Done.