Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A06
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 115140250
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2234201 characters in sequence are not A, C, G, or T
File 265 of 345
Found at i:90268941 original size:46 final size:46
Alignment explanation
Indices: 90268822--90268955 Score: 200
Period size: 46 Copynumber: 2.9 Consensus size: 46
90268812 TGTCATGTTA
* *
90268822 CCATGGTATCTTTCAACCATGGTCTTATTC-T-TTTCATGTCACGTTG
1 CCATGGTATCTTTCAACCATGGTCTTA--CATATTTCATATCAGGTTG
*
90268868 CCATAGTATCTTTCAACCATGGTCTTACATATTTCATATCAGGTTG
1 CCATGGTATCTTTCAACCATGGTCTTACATATTTCATATCAGGTTG
*
90268914 CCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
1 CCATGGTATCTTTCAACCATGGTCTTACATATTTCATATCAG
90268956 AGAGCACACT
Statistics
Matches: 81, Mismatches: 5, Indels: 4
0.90 0.06 0.04
Matches are distributed among these distances:
44 1 0.01
45 1 0.01
46 79 0.98
ACGTcount: A:0.23, C:0.24, G:0.13, T:0.40
Consensus pattern (46 bp):
CCATGGTATCTTTCAACCATGGTCTTACATATTTCATATCAGGTTG
Found at i:90272864 original size:17 final size:17
Alignment explanation
Indices: 90272844--90272888 Score: 51
Period size: 14 Copynumber: 2.8 Consensus size: 17
90272834 ATAATCCTAG
90272844 GGTTCGCATATAATCAT
1 GGTTCGCATATAATCAT
*
90272861 GGTT--CACATAA-CAT
1 GGTTCGCATATAATCAT
*
90272875 GGGTCGCATATAAT
1 GGTTCGCATATAAT
90272889 AAACACATGG
Statistics
Matches: 22, Mismatches: 3, Indels: 6
0.71 0.10 0.19
Matches are distributed among these distances:
14 6 0.27
15 6 0.27
16 6 0.27
17 4 0.18
ACGTcount: A:0.31, C:0.18, G:0.20, T:0.31
Consensus pattern (17 bp):
GGTTCGCATATAATCAT
Found at i:90272882 original size:31 final size:32
Alignment explanation
Indices: 90272847--90272923 Score: 93
Period size: 36 Copynumber: 2.3 Consensus size: 32
90272837 ATCCTAGGGT
*
90272847 TCGCATATAAT-CATGGTTCACATAACATGGG
1 TCGCATATAATACATGGTTCACATAACATGGC
*
90272878 TCGCATATAATAAACACATGGTTCACATATCATGGC
1 TCGCATATAAT----ACATGGTTCACATAACATGGC
90272914 TCGCATATAA
1 TCGCATATAA
90272924 ATTCAAATAA
Statistics
Matches: 39, Mismatches: 2, Indels: 5
0.85 0.04 0.11
Matches are distributed among these distances:
31 11 0.28
36 28 0.72
ACGTcount: A:0.35, C:0.21, G:0.16, T:0.29
Consensus pattern (32 bp):
TCGCATATAATACATGGTTCACATAACATGGC
Found at i:90273406 original size:31 final size:31
Alignment explanation
Indices: 90273371--90273431 Score: 122
Period size: 31 Copynumber: 2.0 Consensus size: 31
90273361 CCACACCTGG
90273371 TTTAGTTTGGAGAGGAGATTGAAGATCCACC
1 TTTAGTTTGGAGAGGAGATTGAAGATCCACC
90273402 TTTAGTTTGGAGAGGAGATTGAAGATCCAC
1 TTTAGTTTGGAGAGGAGATTGAAGATCCAC
90273432 TTAAGGGATG
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.30, C:0.11, G:0.30, T:0.30
Consensus pattern (31 bp):
TTTAGTTTGGAGAGGAGATTGAAGATCCACC
Found at i:90282432 original size:29 final size:30
Alignment explanation
Indices: 90282382--90282445 Score: 71
Period size: 29 Copynumber: 2.2 Consensus size: 30
90282372 CTATTGTTCA
90282382 CAATATATCTATTTAAATTTAT-TTTATTTT
1 CAATATATCTATTTAAATTTATATTT-TTTT
*
90282412 CAATATAT-TA-TTATATGTTATATTTTTTT
1 CAATATATCTATTTAAAT-TTATATTTTTTT
*
90282441 GAATA
1 CAATA
90282446 AAAATAATTT
Statistics
Matches: 30, Mismatches: 2, Indels: 5
0.81 0.05 0.14
Matches are distributed among these distances:
28 5 0.17
29 14 0.47
30 11 0.37
ACGTcount: A:0.34, C:0.05, G:0.03, T:0.58
Consensus pattern (30 bp):
CAATATATCTATTTAAATTTATATTTTTTT
Found at i:90283051 original size:61 final size:61
Alignment explanation
Indices: 90282858--90283057 Score: 183
Period size: 61 Copynumber: 3.3 Consensus size: 61
90282848 TATTTCGCCA
** * * * * * *
90282858 TCTAATGTTTACGTAGTTTATCAATTTGATTCTAAA-TCTAAACAA-TTCAACAAATTTAAAC
1 TCTAATGTTTACAAAATTTGTCATTTTAATTC-AAATTCTAAA-AATTTCAATAAATTTAATC
* * * * ** *
90282919 TTTAATGTTAAAAAAATTTGTCATTTTAGTTTTAATTC-AAAAATGATCAATAAATTTAATC
1 TCTAATGTTTACAAAATTTGTCATTTTAATTCAAATTCTAAAAAT-TTCAATAAATTTAATC
*
90282980 -CTCAATGTTTACAAAATTTTTCATTTTAATTCAAATTCTAAAAATTTCAATAAATTTAATC
1 TCT-AATGTTTACAAAATTTGTCATTTTAATTCAAATTCTAAAAATTTCAATAAATTTAATC
*
90283041 TCTAACGTTTACAAAAT
1 TCTAATGTTTACAAAAT
90283058 GACAAATTTT
Statistics
Matches: 109, Mismatches: 24, Indels: 12
0.75 0.17 0.08
Matches are distributed among these distances:
59 2 0.02
60 6 0.06
61 93 0.85
62 8 0.07
ACGTcount: A:0.41, C:0.12, G:0.05, T:0.42
Consensus pattern (61 bp):
TCTAATGTTTACAAAATTTGTCATTTTAATTCAAATTCTAAAAATTTCAATAAATTTAATC
Found at i:90284260 original size:15 final size:16
Alignment explanation
Indices: 90284222--90284261 Score: 64
Period size: 16 Copynumber: 2.5 Consensus size: 16
90284212 TAAAAATTAA
90284222 ATTTTAACTTAAAATAT
1 ATTTTAA-TTAAAATAT
90284239 ATTTTAATTAAAATAT
1 ATTTTAATTAAAATAT
90284255 -TTTTAAT
1 ATTTTAAT
90284262 GACATTGATT
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
15 7 0.30
16 9 0.39
17 7 0.30
ACGTcount: A:0.45, C:0.03, G:0.00, T:0.53
Consensus pattern (16 bp):
ATTTTAATTAAAATAT
Found at i:90290876 original size:3 final size:3
Alignment explanation
Indices: 90290858--90290923 Score: 116
Period size: 3 Copynumber: 22.3 Consensus size: 3
90290848 TATTGTAGTC
*
90290858 TCT T-T TCT TTT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT
1 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT
90290905 TCT TCT TCT TCT TCT TCT T
1 TCT TCT TCT TCT TCT TCT T
90290924 GATTTTATTA
Statistics
Matches: 60, Mismatches: 2, Indels: 2
0.94 0.03 0.03
Matches are distributed among these distances:
2 2 0.03
3 58 0.97
ACGTcount: A:0.00, C:0.30, G:0.00, T:0.70
Consensus pattern (3 bp):
TCT
Found at i:90291675 original size:14 final size:13
Alignment explanation
Indices: 90291650--90291678 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
90291640 AAAAATATTT
90291650 TTTAGTAAAAAAA
1 TTTAGTAAAAAAA
90291663 TTTAGTAAAAAAA
1 TTTAGTAAAAAAA
90291676 TTT
1 TTT
90291679 TGGATTAATT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.55, C:0.00, G:0.07, T:0.38
Consensus pattern (13 bp):
TTTAGTAAAAAAA
Found at i:90296073 original size:21 final size:22
Alignment explanation
Indices: 90296044--90296090 Score: 78
Period size: 21 Copynumber: 2.2 Consensus size: 22
90296034 CAGAAGGAGT
*
90296044 GAGTAGTACTTCGCAGCAGGTG
1 GAGTAGTACTCCGCAGCAGGTG
90296066 GAGT-GTACTCCGCAGCAGGTG
1 GAGTAGTACTCCGCAGCAGGTG
90296087 GAGT
1 GAGT
90296091 TTGAGCAGAG
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
21 20 0.83
22 4 0.17
ACGTcount: A:0.21, C:0.19, G:0.38, T:0.21
Consensus pattern (22 bp):
GAGTAGTACTCCGCAGCAGGTG
Found at i:90302895 original size:26 final size:26
Alignment explanation
Indices: 90302865--90302972 Score: 171
Period size: 26 Copynumber: 4.2 Consensus size: 26
90302855 TGAAATGCCC
* *
90302865 ATCATAGAACATTTACGTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
*
90302891 ATCATGGAATATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
* *
90302917 ATCATGGAATATTTACCTAATCCATT
1 ATCATGGAACATTTACCTAACCCATT
90302943 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
90302969 ATCA
1 ATCA
90302973 ATTTGTACCA
Statistics
Matches: 76, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 76 1.00
ACGTcount: A:0.36, C:0.23, G:0.07, T:0.33
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:90309009 original size:79 final size:78
Alignment explanation
Indices: 90308875--90309086 Score: 250
Period size: 79 Copynumber: 2.7 Consensus size: 78
90308865 CCTTCGAAAT
* * *
90308875 TTAACCGGATATAGCTACTCGCTCAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACA
1 TTAACCGGATATAG-TACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACA
90308940 AATGCCTTCGGGA-C
65 AATGCCTTC-GGATC
* *
90308954 TTAACCCGGATTTAGTAACTCGCACCAATGCCTTCGGG-CTTAGCCCGGA-ATTAGTAACTCGCA
1 TTAA-CCGGATATAGT-ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCA
90309017 CAAATGCCTTCGGATC
63 CAAATGCCTTCGGATC
* * * *
90309033 TTAGTCCGGATATAGTCACTTAGCACAAAAGCCTTCGGGACTTAGCCCGTATAT
1 TTA-ACCGGATATAGT-AC-TCGCACAAATGCCTTCGGGACTTAGCCCGGATAT
90309087 CATTCGAATA
Statistics
Matches: 113, Mismatches: 12, Indels: 14
0.81 0.09 0.10
Matches are distributed among these distances:
78 4 0.04
79 53 0.47
80 44 0.39
81 11 0.10
82 1 0.01
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.25
Consensus pattern (78 bp):
TTAACCGGATATAGTACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAA
ATGCCTTCGGATC
Found at i:90309012 original size:39 final size:40
Alignment explanation
Indices: 90308879--90309086 Score: 253
Period size: 40 Copynumber: 5.2 Consensus size: 40
90308869 CGAAATTTAA
* *
90308879 CCGGATATAGCT-ACTCGCTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* *
90308919 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
90308959 CCGGATTTAGTAACTCGCACCAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
90308998 CCGGA-ATTAGTAACTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
90309038 CCGGATATAGTCACTTAGCACAAAAGCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
*
90309079 CCGTATAT
1 CCGGATAT
90309087 CATTCGAATA
Statistics
Matches: 145, Mismatches: 16, Indels: 13
0.83 0.09 0.07
Matches are distributed among these distances:
38 2 0.01
39 33 0.23
40 80 0.55
41 27 0.19
42 3 0.02
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:90314679 original size:29 final size:29
Alignment explanation
Indices: 90314637--90314692 Score: 103
Period size: 29 Copynumber: 1.9 Consensus size: 29
90314627 CTCTCGAGTA
90314637 TGCGTTACAATTAGGGTTTAGCCTGGATC
1 TGCGTTACAATTAGGGTTTAGCCTGGATC
*
90314666 TGCGTTACAATTAGGGTTTAGCTTGGA
1 TGCGTTACAATTAGGGTTTAGCCTGGA
90314693 CTGGTAATCC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 26 1.00
ACGTcount: A:0.21, C:0.14, G:0.29, T:0.36
Consensus pattern (29 bp):
TGCGTTACAATTAGGGTTTAGCCTGGATC
Found at i:90317087 original size:27 final size:27
Alignment explanation
Indices: 90317057--90317122 Score: 89
Period size: 27 Copynumber: 2.4 Consensus size: 27
90317047 TTTCCACTTA
90317057 TAAGATAGTCCTGACAGACTTCCCAT-T
1 TAAGATAGTCCTGACAGACTT-CCATAT
* *
90317084 TAAGATAGTCTTGACGGACTTCCATAT
1 TAAGATAGTCCTGACAGACTTCCATAT
*
90317111 TAAAATAGTCCT
1 TAAGATAGTCCT
90317123 TATGGACTTC
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
26 4 0.12
27 30 0.88
ACGTcount: A:0.32, C:0.21, G:0.15, T:0.32
Consensus pattern (27 bp):
TAAGATAGTCCTGACAGACTTCCATAT
Found at i:90317129 original size:27 final size:26
Alignment explanation
Indices: 90317061--90317133 Score: 76
Period size: 27 Copynumber: 2.7 Consensus size: 26
90317051 CACTTATAAG
* * *
90317061 ATAGTCCTGACAGACTTCCCATTTAAG
1 ATAGTCTTGACGGACTT-CCATTTAAA
90317088 ATAGTCTTGACGGACTTCCATATTAAA
1 ATAGTCTTGACGGACTTCCAT-TTAAA
*
90317115 ATAGTCCTT-ATGGACTTCC
1 ATAGT-CTTGACGGACTTCC
90317134 TACTTATTAG
Statistics
Matches: 40, Mismatches: 4, Indels: 4
0.83 0.08 0.08
Matches are distributed among these distances:
26 4 0.10
27 33 0.82
28 3 0.08
ACGTcount: A:0.29, C:0.23, G:0.15, T:0.33
Consensus pattern (26 bp):
ATAGTCTTGACGGACTTCCATTTAAA
Found at i:90324894 original size:18 final size:19
Alignment explanation
Indices: 90324871--90324907 Score: 58
Period size: 18 Copynumber: 2.0 Consensus size: 19
90324861 TTTTCATCTG
90324871 GAACTTACTAAGTT-CATT
1 GAACTTACTAAGTTACATT
*
90324889 GAACTTACTTAGTTACATT
1 GAACTTACTAAGTTACATT
90324908 TCCTTCTCAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 13 0.76
19 4 0.24
ACGTcount: A:0.32, C:0.16, G:0.11, T:0.41
Consensus pattern (19 bp):
GAACTTACTAAGTTACATT
Found at i:90333381 original size:53 final size:54
Alignment explanation
Indices: 90333313--90333514 Score: 208
Period size: 53 Copynumber: 3.7 Consensus size: 54
90333303 TCCTTTTTAG
* * * *
90333313 ACTTACCATTTCCATGTCTTGACATGGTCTTACGTGGTATCCTTGCCTTAT-GA
1 ACTTACCAATGCCATGCCTTGACATGGTCTTACTTGGTATCCTTGCCTTATAGA
* * * * * * *
90333366 ACTCACCATTGCCATGCCTTGGCATGGTCTTACATGGGATCTTTGCCTTATCGTA
1 ACTTACCAATGCCATGCCTTGACATGGTCTTACTTGGTATCCTTGCCTTATAG-A
** * * * * * *
90333421 GTTTATCAATGCCATGTCTTGACATGGTCTTACTTGATTTCCTTGCCTTGTAAA
1 ACTTACCAATGCCATGCCTTGACATGGTCTTACTTGGTATCCTTGCCTTATAGA
*
90333475 ACTTACCAATGCCATGCCTTGGCATGGTCTTACTTGGTAT
1 ACTTACCAATGCCATGCCTTGACATGGTCTTACTTGGTAT
90333515 TCTTAAACCC
Statistics
Matches: 118, Mismatches: 29, Indels: 3
0.79 0.19 0.02
Matches are distributed among these distances:
53 44 0.37
54 35 0.30
55 39 0.33
ACGTcount: A:0.19, C:0.24, G:0.18, T:0.38
Consensus pattern (54 bp):
ACTTACCAATGCCATGCCTTGACATGGTCTTACTTGGTATCCTTGCCTTATAGA
Found at i:90343112 original size:22 final size:22
Alignment explanation
Indices: 90343087--90343138 Score: 77
Period size: 22 Copynumber: 2.4 Consensus size: 22
90343077 CACTAGGAAC
*
90343087 TATGTGATCTGAGCTCATGAGA
1 TATGTGATCTGAGCTCATAAGA
*
90343109 TATGTGGTCTGAGCTCATAAGA
1 TATGTGATCTGAGCTCATAAGA
*
90343131 CATGTGAT
1 TATGTGAT
90343139 ATATGTTTAT
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
22 26 1.00
ACGTcount: A:0.27, C:0.13, G:0.27, T:0.33
Consensus pattern (22 bp):
TATGTGATCTGAGCTCATAAGA
Found at i:90348131 original size:43 final size:43
Alignment explanation
Indices: 90348070--90348232 Score: 188
Period size: 43 Copynumber: 3.8 Consensus size: 43
90348060 AACGGCAACA
* *
90348070 TCCCAGACGTGGTCTTACATGTAATCACATATCGATGCCATTG
1 TCCCAGACGTGGTCTTACACGTAATCACATATCGATGCCAATG
*
90348113 TCCCAGACAG-GGTCTTACACG-AACTCATATAT-GATGCCAATG
1 TCCCAGAC-GTGGTCTTACACGTAA-TCACATATCGATGCCAATG
* * * * * *
90348155 TCCTAGACATGGTCTAACATGTAAATCACAAATCGATGCCAACG
1 TCCCAGACGTGGTCTTACACGT-AATCACATATCGATGCCAATG
*
90348199 TCCCAGACGTGGTCTTACACGAAATCACATATCG
1 TCCCAGACGTGGTCTTACACGTAATCACATATCG
90348233 GAATCCTATG
Statistics
Matches: 98, Mismatches: 16, Indels: 12
0.78 0.13 0.10
Matches are distributed among these distances:
42 27 0.28
43 42 0.43
44 29 0.30
ACGTcount: A:0.31, C:0.26, G:0.18, T:0.25
Consensus pattern (43 bp):
TCCCAGACGTGGTCTTACACGTAATCACATATCGATGCCAATG
Found at i:90353958 original size:19 final size:17
Alignment explanation
Indices: 90353934--90353976 Score: 50
Period size: 17 Copynumber: 2.4 Consensus size: 17
90353924 TCGAGCCGTG
90353934 ATGGGCCGAAAGGGGCCAT
1 ATGGGCC-AAAGGGGCC-T
* *
90353953 ATGGGCCCAATGGGCCT
1 ATGGGCCAAAGGGGCCT
90353970 ATGGGCC
1 ATGGGCC
90353977 CAATTGGATA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
17 8 0.36
18 7 0.32
19 7 0.32
ACGTcount: A:0.21, C:0.26, G:0.40, T:0.14
Consensus pattern (17 bp):
ATGGGCCAAAGGGGCCT
Found at i:90353974 original size:17 final size:18
Alignment explanation
Indices: 90353946--90353980 Score: 63
Period size: 17 Copynumber: 2.0 Consensus size: 18
90353936 GGGCCGAAAG
90353946 GGGCCATATGGGCCCAAT
1 GGGCCATATGGGCCCAAT
90353964 GGGCC-TATGGGCCCAAT
1 GGGCCATATGGGCCCAAT
90353981 TGGATAAGTT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 12 0.71
18 5 0.29
ACGTcount: A:0.20, C:0.29, G:0.34, T:0.17
Consensus pattern (18 bp):
GGGCCATATGGGCCCAAT
Found at i:90354106 original size:27 final size:27
Alignment explanation
Indices: 90354076--90354280 Score: 200
Period size: 27 Copynumber: 7.6 Consensus size: 27
90354066 TGTAGGGTAG
* * *
90354076 AATTACTAAAATACCCTTGGTTTATAA
1 AATTACCAAAATACCCTTAGTTTGTAA
90354103 AATTACCAAAATA-CCTCTAGTTTGTAA
1 AATTACCAAAATACCCT-TAGTTTGTAA
* *
90354130 AATTACCAAAATACCCCTGGTTTGTAA
1 AATTACCAAAATACCCTTAGTTTGTAA
*
90354157 AATTACCAAAATACCCCTAGTTTGTAA
1 AATTACCAAAATACCCTTAGTTTGTAA
* *
90354184 AATTACCAAAATACCCAT-GATTTGTGA
1 AATTACCAAAATACCCTTAG-TTTGTAA
* * ***
90354211 AATTACTAAAATACCCTCAACCTGTAA
1 AATTACCAAAATACCCTTAGTTTGTAA
* * *
90354238 AATTACTAAAATACCC-TCGACTTGTAA
1 AATTACCAAAATACCCTTAG-TTTGTAA
* *
90354265 AATTACCGAAGTACCC
1 AATTACCAAAATACCC
90354281 CCGATTTACA
Statistics
Matches: 151, Mismatches: 22, Indels: 10
0.83 0.12 0.05
Matches are distributed among these distances:
26 4 0.03
27 145 0.96
28 2 0.01
ACGTcount: A:0.40, C:0.21, G:0.08, T:0.30
Consensus pattern (27 bp):
AATTACCAAAATACCCTTAGTTTGTAA
Found at i:90354141 original size:54 final size:53
Alignment explanation
Indices: 90354076--90354280 Score: 239
Period size: 54 Copynumber: 3.8 Consensus size: 53
90354066 TGTAGGGTAG
* *
90354076 AATTACTAAAATACCCTTGGTTTATAAAATTACCAAAATACCTCTAGTTTGTAA
1 AATTACCAAAATACCCTTGGTTTGTAAAATTACCAAAATACC-CTAGTTTGTAA
*
90354130 AATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCCTAGTTTGTAA
1 AATTACCAAAATACCCTTGGTTTGTAAAATTACCAAAATA-CCCTAGTTTGTAA
* * * * ***
90354184 AATTACCAAAATACCCATGATTTGTGAAATTACTAAAATACCCTCAACCTGTAA
1 AATTACCAAAATACCCTTGGTTTGTAAAATTACCAAAATACCCT-AGTTTGTAA
* * ** * *
90354238 AATTACTAAAATACCCTCGACTTGTAAAATTACCGAAGTACCC
1 AATTACCAAAATACCCTTGGTTTGTAAAATTACCAAAATACCC
90354281 CCGATTTACA
Statistics
Matches: 131, Mismatches: 18, Indels: 4
0.86 0.12 0.03
Matches are distributed among these distances:
53 4 0.03
54 125 0.95
55 2 0.02
ACGTcount: A:0.40, C:0.21, G:0.08, T:0.30
Consensus pattern (53 bp):
AATTACCAAAATACCCTTGGTTTGTAAAATTACCAAAATACCCTAGTTTGTAA
Found at i:90354349 original size:27 final size:27
Alignment explanation
Indices: 90354317--90354379 Score: 74
Period size: 27 Copynumber: 2.3 Consensus size: 27
90354307 CTCAATTTAC
**
90354317 AAAATTATTGAAATATCCC-TATAGGGT
1 AAAATTACCGAAATA-CCCTTATAGGGT
* *
90354344 AGAATTACCGAAATACCCTTGTAGGGT
1 AAAATTACCGAAATACCCTTATAGGGT
90354371 AAAATTACC
1 AAAATTACC
90354380 ATTTTACCCT
Statistics
Matches: 30, Mismatches: 5, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
26 3 0.10
27 27 0.90
ACGTcount: A:0.40, C:0.16, G:0.16, T:0.29
Consensus pattern (27 bp):
AAAATTACCGAAATACCCTTATAGGGT
Found at i:90354819 original size:22 final size:22
Alignment explanation
Indices: 90354768--90354831 Score: 76
Period size: 22 Copynumber: 2.9 Consensus size: 22
90354758 CCAATTATTT
* *
90354768 TGATTATGGCTTTGCGCCAACC
1 TGATTATGGCTCTGTGCCAACC
*
90354790 T-ACATATGGCTCTGTGCCAACC
1 TGA-TTATGGCTCTGTGCCAACC
*
90354812 TGATTATGGCTGTGTGCCAA
1 TGATTATGGCTCTGTGCCAA
90354832 ATGTATTTGC
Statistics
Matches: 35, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
21 1 0.03
22 33 0.94
23 1 0.03
ACGTcount: A:0.20, C:0.25, G:0.23, T:0.31
Consensus pattern (22 bp):
TGATTATGGCTCTGTGCCAACC
Found at i:90355020 original size:27 final size:26
Alignment explanation
Indices: 90354990--90355097 Score: 126
Period size: 27 Copynumber: 4.0 Consensus size: 26
90354980 GTTCTGTTAA
* *
90354990 GTGGCTTTGCCACATTATCTGTTTCTG
1 GTGGCTCTGCCACAATATCTG-TTCTG
* * *
90355017 GTGGCTATGCCACAAATATATGTTCTA
1 GTGGCTCTGCCAC-AATATCTGTTCTG
90355044 GTGGCTCTGCCACAATATCTGTATCTG
1 GTGGCTCTGCCACAATATCTGT-TCTG
* *
90355071 GTGACTCTGTCACAATATCTGTTCTG
1 GTGGCTCTGCCACAATATCTGTTCTG
90355097 G
1 G
90355098 CAGCCATGCT
Statistics
Matches: 70, Mismatches: 9, Indels: 5
0.83 0.11 0.06
Matches are distributed among these distances:
26 13 0.19
27 51 0.73
28 6 0.09
ACGTcount: A:0.19, C:0.22, G:0.21, T:0.37
Consensus pattern (26 bp):
GTGGCTCTGCCACAATATCTGTTCTG
Found at i:90355047 original size:54 final size:53
Alignment explanation
Indices: 90354989--90355095 Score: 142
Period size: 54 Copynumber: 2.0 Consensus size: 53
90354979 TGTTCTGTTA
* * * *
90354989 AGTGGCTTTGCCACATTATCTGTTTCTGGTGGCTATGCCACAAATATATGTTCT
1 AGTGGCTCTGCCACAATATCTGTATCTGGTGACTATGCCAC-AATATATGTTCT
* * *
90355043 AGTGGCTCTGCCACAATATCTGTATCTGGTGACTCTGTCACAATATCTGTTCT
1 AGTGGCTCTGCCACAATATCTGTATCTGGTGACTATGCCACAATATATGTTCT
90355096 GGCAGCCATG
Statistics
Matches: 46, Mismatches: 7, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
53 11 0.24
54 35 0.76
ACGTcount: A:0.21, C:0.22, G:0.20, T:0.37
Consensus pattern (53 bp):
AGTGGCTCTGCCACAATATCTGTATCTGGTGACTATGCCACAATATATGTTCT
Found at i:90355224 original size:6 final size:6
Alignment explanation
Indices: 90355215--90355349 Score: 53
Period size: 6 Copynumber: 22.0 Consensus size: 6
90355205 TTGCATTCAC
* * * * *
90355215 ATTCTG ATTCTC ATTCTG -TTACCTG ATACTG ATTCTG ATTTTG -TCACCTA
1 ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG AT--TCTG
* * * *
90355265 ATTCTG ATTTTG ATTCTG ATTTTG ATTCTG -TCACCTG ATTCTG ATTCTC
1 ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG AT--TCTG ATTCTG ATTCTG
* * * * *
90355314 ATTTTG ATACT- AGTTCTG ATTATG TTTCTT ATTCTG
1 ATTCTG ATTCTG A-TTCTG ATTCTG ATTCTG ATTCTG
90355350 TAATGGGCTA
Statistics
Matches: 90, Mismatches: 28, Indels: 22
0.64 0.20 0.16
Matches are distributed among these distances:
5 5 0.06
6 74 0.82
7 8 0.09
8 3 0.03
ACGTcount: A:0.19, C:0.18, G:0.13, T:0.50
Consensus pattern (6 bp):
ATTCTG
Found at i:90355246 original size:25 final size:25
Alignment explanation
Indices: 90355218--90355282 Score: 76
Period size: 25 Copynumber: 2.6 Consensus size: 25
90355208 CATTCACATT
* * *
90355218 CTGATTCTCATTCTGTTACCTGATA
1 CTGATTCTGATTCTGTCACCTAATA
* *
90355243 CTGATTCTGATTTTGTCACCTAATT
1 CTGATTCTGATTCTGTCACCTAATA
*
90355268 CTGATTTTGATTCTG
1 CTGATTCTGATTCTG
90355283 ATTTTGATTC
Statistics
Matches: 33, Mismatches: 7, Indels: 0
0.82 0.17 0.00
Matches are distributed among these distances:
25 33 1.00
ACGTcount: A:0.18, C:0.20, G:0.14, T:0.48
Consensus pattern (25 bp):
CTGATTCTGATTCTGTCACCTAATA
Found at i:90355282 original size:12 final size:12
Alignment explanation
Indices: 90355265--90355294 Score: 60
Period size: 12 Copynumber: 2.5 Consensus size: 12
90355255 TTGTCACCTA
90355265 ATTCTGATTTTG
1 ATTCTGATTTTG
90355277 ATTCTGATTTTG
1 ATTCTGATTTTG
90355289 ATTCTG
1 ATTCTG
90355295 TCACCTGATT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.17, C:0.10, G:0.17, T:0.57
Consensus pattern (12 bp):
ATTCTGATTTTG
Found at i:90355285 original size:37 final size:37
Alignment explanation
Indices: 90355238--90355310 Score: 110
Period size: 37 Copynumber: 2.0 Consensus size: 37
90355228 TTCTGTTACC
*
90355238 TGATACTGATTCTGATTTTGTCACCTAATTCTGATTT
1 TGATACTGATTCTGATTCTGTCACCTAATTCTGATTT
* * *
90355275 TGATTCTGATTTTGATTCTGTCACCTGATTCTGATT
1 TGATACTGATTCTGATTCTGTCACCTAATTCTGATT
90355311 CTCATTTTGA
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
37 32 1.00
ACGTcount: A:0.19, C:0.16, G:0.15, T:0.49
Consensus pattern (37 bp):
TGATACTGATTCTGATTCTGTCACCTAATTCTGATTT
Found at i:90358531 original size:25 final size:25
Alignment explanation
Indices: 90358503--90358552 Score: 91
Period size: 25 Copynumber: 2.0 Consensus size: 25
90358493 CTTACTAAGC
90358503 ATTGTGTTGTTTATGTTTGCTTTGT
1 ATTGTGTTGTTTATGTTTGCTTTGT
*
90358528 ATTGTGTTTTTTATGTTTGCTTTGT
1 ATTGTGTTGTTTATGTTTGCTTTGT
90358553 TTGATTTCTT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.08, C:0.04, G:0.22, T:0.66
Consensus pattern (25 bp):
ATTGTGTTGTTTATGTTTGCTTTGT
Found at i:90362386 original size:184 final size:183
Alignment explanation
Indices: 90362072--90362419 Score: 527
Period size: 184 Copynumber: 1.9 Consensus size: 183
90362062 ATAGTAGGGG
* * * * *
90362072 AAAAAACAATGATTTTAAGTTGAAAGTGTGGTGGGGTTTTACAAAAATTACACAAAAGCATGATT
1 AAAAAACAATGATTTTAAGCTAAAAGTATAGTGGGGTTTTACAAAAAGTACACAAAAGCATGATT
* * *
90362137 ATTATAATGGTAATGCAAATTCTTGCAAATGAAATGAGCCAACCATGTGTTTTGAAGAGGAAAAA
66 ATAATAATGGTAATGCAAAATCTTGCAAATGAAATGAGCCAACCATGTGTTTTGAAGAAGAAAAA
* *
90362202 TGGTGTTTGGTATGAAAGAAAATGAGAGCAAAAAAGGCAGCCGACAGTGGAGAA
131 TGGTGTTTGGAAAGAAAGAAAATGAGAG-AAAAAAGGCAGCCGACAGTGGAGAA
90362256 AAAAAACAATGATTTTAAGCTAAAAGTATAGTGTGGG-TTTACAAAAAGTACACAAAAGCATGAT
1 AAAAAACAATGATTTTAAGCTAAAAGTATAGTG-GGGTTTTACAAAAAGTACACAAAAGCATGAT
* * * * *
90362320 TATAATCATGGTAATGGAAAATCTTGTAGATGAAATGAGCCAACCATGTGTTTTTAAGAAGAAAA
65 TATAATAATGGTAATGCAAAATCTTGCAAATGAAATGAGCCAACCATGTGTTTTGAAGAAGAAAA
*
90362385 ATGGTGTTTGGAAAGAGAGAAAATGAGAGAAAAAA
130 ATGGTGTTTGGAAAGAAAGAAAATGAGAGAAAAAA
90362420 TTTATTAAAT
Statistics
Matches: 147, Mismatches: 16, Indels: 3
0.89 0.10 0.02
Matches are distributed among these distances:
183 6 0.04
184 138 0.94
185 3 0.02
ACGTcount: A:0.44, C:0.08, G:0.23, T:0.25
Consensus pattern (183 bp):
AAAAAACAATGATTTTAAGCTAAAAGTATAGTGGGGTTTTACAAAAAGTACACAAAAGCATGATT
ATAATAATGGTAATGCAAAATCTTGCAAATGAAATGAGCCAACCATGTGTTTTGAAGAAGAAAAA
TGGTGTTTGGAAAGAAAGAAAATGAGAGAAAAAAGGCAGCCGACAGTGGAGAA
Found at i:90363451 original size:377 final size:377
Alignment explanation
Indices: 90362757--90363467 Score: 1323
Period size: 377 Copynumber: 1.9 Consensus size: 377
90362747 AAAATGTAGA
* * * *
90362757 TTTTTATGCAAAGTTGAGAAACCTAGAAGTGAGGAAGATGAAGAAATTAATAGTATTTTGAGTGT
1 TTTTTATGCAAAGTCGAGAAACCCAGAAGTGAGAAAGATGAAGAAATTAATAGTATCTTGAGTGT
90362822 TTTTCTTGAAATTGCTATGAAGATTAATGCTATGGAAATGGAGGAAATCAATTGAATTAAGGTTT
66 TTTTCTTGAAATTGCTATGAAGATTAATGCTATGGAAATGGAGGAAATCAATTGAATTAAGGTTT
*
90362887 GATGAAAAAAAATGAAATAGAGGAGCTAAGGGAGGAAGGGATAGCTAAAGCAGAAAGATGGATAA
131 GATGAAAAAAAATGAAATAGAGGAGCTAAGGGAGGAAGGGATAGCTAAAGCAGAAAGATGGAAAA
* *
90362952 GACTTTCACGAAAAAATGAATGTGGGGGGAAAGAAATAGGTCTATTTTAAAAATTTGGTAAAACT
196 GACTTTCACGAAAAAATGAAGGTGAGGGGAAAGAAATAGGTCTATTTTAAAAATTTGGTAAAACT
*
90363017 ACAACATAAATGCTCACAATTTTGACTCTATCGCAAATTAGTCCTTTTCCTAAAATTAAGTTTTC
261 ACAACATAAATGCTCACAATTTTGACTCTATCGCAAATCAGTCCTTTTCCTAAAATTAAGTTTTC
90363082 TAGAACACTCTATCACAATTTCTAGAACACGTTTTCTAGAAAGACGTAGATT
326 TAGAACACTCTATCACAATTTCTAGAACACGTTTTCTAGAAAGACGTAGATT
90363134 TTTTTATGCAAAGTCGAGAAACCCAGAAGTGAGAAAGATGAAGAAATTAATAGTATCTTGAGTGT
1 TTTTTATGCAAAGTCGAGAAACCCAGAAGTGAGAAAGATGAAGAAATTAATAGTATCTTGAGTGT
90363199 TTTTCTTGAAATTGCTATGAAGATTAATGCTATGGAAATGGAGGAAATCAATTGAATTAAGGTTT
66 TTTTCTTGAAATTGCTATGAAGATTAATGCTATGGAAATGGAGGAAATCAATTGAATTAAGGTTT
*
90363264 GATGAAAAAAAATGAAATAGAGGAGCTAAGGGAGGAAGGGATAGCTAAAGCATAAAGATGGAAAA
131 GATGAAAAAAAATGAAATAGAGGAGCTAAGGGAGGAAGGGATAGCTAAAGCAGAAAGATGGAAAA
* *
90363329 GACTTTCGCGAAAAAATGAAGGTGAGGGGAAAGAAATAGGTCTATTTTAAAATTTTGGTAAAACT
196 GACTTTCACGAAAAAATGAAGGTGAGGGGAAAGAAATAGGTCTATTTTAAAAATTTGGTAAAACT
90363394 ACAACATAAATGCTCACAATTTTGACTCTATCGCAAATCAGTCCTTTTCCTAAAATTAAGTTTTC
261 ACAACATAAATGCTCACAATTTTGACTCTATCGCAAATCAGTCCTTTTCCTAAAATTAAGTTTTC
90363459 TAGAACACT
326 TAGAACACT
90363468 TTTTCAAAAA
Statistics
Matches: 323, Mismatches: 11, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
377 323 1.00
ACGTcount: A:0.40, C:0.10, G:0.21, T:0.29
Consensus pattern (377 bp):
TTTTTATGCAAAGTCGAGAAACCCAGAAGTGAGAAAGATGAAGAAATTAATAGTATCTTGAGTGT
TTTTCTTGAAATTGCTATGAAGATTAATGCTATGGAAATGGAGGAAATCAATTGAATTAAGGTTT
GATGAAAAAAAATGAAATAGAGGAGCTAAGGGAGGAAGGGATAGCTAAAGCAGAAAGATGGAAAA
GACTTTCACGAAAAAATGAAGGTGAGGGGAAAGAAATAGGTCTATTTTAAAAATTTGGTAAAACT
ACAACATAAATGCTCACAATTTTGACTCTATCGCAAATCAGTCCTTTTCCTAAAATTAAGTTTTC
TAGAACACTCTATCACAATTTCTAGAACACGTTTTCTAGAAAGACGTAGATT
Found at i:90366305 original size:47 final size:47
Alignment explanation
Indices: 90366254--90366904 Score: 1067
Period size: 47 Copynumber: 13.7 Consensus size: 47
90366244 AGGATTCTAA
* * *
90366254 GTGATGGATGTGAACA-TGCATATATGAGATAAGGCCTAATGGCCGAT
1 GTGATGAATGTGAA-AGTGTATATATGTGATAAGGCCTAATGGCCGAT
90366301 GTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGAT
1 GTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGAT
90366350 GTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
1 GTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
90366397 GTGAT-AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGAT
1 GTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGAT
90366445 GTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
1 GTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
*
90366492 GTGATAAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
1 GTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
90366539 GTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
1 GTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
90366586 GTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
1 GTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
*
90366633 GTGAT-AATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGAT
1 GTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
90366679 GTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGTAATGGCCGAT
1 GTGATGAATGTGAAAGTGTATATATGTGATAAGGCC-----TAATGGCCGAT
90366731 GTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
1 GTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
90366778 GTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
1 GTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
* * * * *
90366825 GTGATGAATGTGAAAGTGTATATATGTGA-CAGGGCTGAGTGGCCAAC
1 GTGATGAATGTGAAAGTGTATATATGTGATAAGGCCT-AATGGCCGAT
* *
90366872 GTGATGGATGTGAAAGTGTATAAATGTGATAAG
1 GTGATGAATGTGAAAGTGTATATATGTGATAAG
90366905 TCCCGAAGGG
Statistics
Matches: 575, Mismatches: 15, Indels: 27
0.93 0.02 0.04
Matches are distributed among these distances:
46 63 0.11
47 373 0.65
48 36 0.06
49 57 0.10
52 46 0.08
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.29
Consensus pattern (47 bp):
GTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
Found at i:90366778 original size:286 final size:282
Alignment explanation
Indices: 90366254--90366904 Score: 1067
Period size: 286 Copynumber: 2.3 Consensus size: 282
90366244 AGGATTCTAA
* * *
90366254 GTGATGGATGTGAACA-TGCATATATGAGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGT
1 GTGATGAATGTGAA-AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGT
90366318 GTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAG
65 G--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAG
*
90366383 GCCTAATGGCCGATGTGATAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTG
128 GCCTAATAGCCGATGTGATAATGTGAAAGTG-ATATATATGTGATAAGGCCTAATGGCCGATGTG
90366448 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATAAATGTGAAAGTGTAT
192 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATAAATGTGAAAGTGTAT
90366513 ATATGTGATAAGGCCTAATGGCCGAT
257 ATATGTGATAAGGCCTAATGGCCGAT
90366539 GTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
1 GTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
90366604 TATATATGTGATAAGGCCTAATGGCCGATGTGAT-AATGTGAAAGTGTATATATGTGATAAGGCC
66 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
90366668 TAATAGCCGATGTGATGAATGTGAAAGTG-TATATATGTGATAAGGCCTAATGTAATGGCCGATG
131 TAATAGCCGATGTGAT-AATGTGAAAGTGATATATATGTGATAAGGCC-----TAATGGCCGATG
*
90366732 TGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGT
190 TGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATAAATGTGAAAGTGT
90366797 ATATATGTGATAAGGCCTAATGGCCGAT
255 ATATATGTGATAAGGCCTAATGGCCGAT
* * * * * *
90366825 GTGATGAATGTGAAAGTGTATATATGTGA-CAGGGCTGAGTGGCCAACGTGATGGATGTGAAAGT
1 GTGATGAATGTGAAAGTGTATATATGTGATAAGGCCT-AATGGCCGATGTGATGAATGTGAAAGT
*
90366889 GTATAAATGTGATAAG
65 GTATATATGTGATAAG
90366905 TCCCGAAGGG
Statistics
Matches: 346, Mismatches: 12, Indels: 15
0.93 0.03 0.04
Matches are distributed among these distances:
281 18 0.05
282 45 0.13
283 46 0.13
284 1 0.00
285 65 0.19
286 171 0.49
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.29
Consensus pattern (282 bp):
GTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
TAATAGCCGATGTGATAATGTGAAAGTGATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATAAATGTGAAAGTGTATATAT
GTGATAAGGCCTAATGGCCGAT
Found at i:90369482 original size:18 final size:18
Alignment explanation
Indices: 90369437--90369476 Score: 66
Period size: 17 Copynumber: 2.3 Consensus size: 18
90369427 ATAGATCAAA
90369437 ATTTTG-AAAATATTTTG
1 ATTTTGAAAAATATTTTG
90369454 ATTTTGAAAAATATTTTG
1 ATTTTGAAAAATATTTTG
90369472 -TTTTG
1 ATTTTG
90369477 CTAAAAAAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
17 11 0.50
18 11 0.50
ACGTcount: A:0.33, C:0.00, G:0.12, T:0.55
Consensus pattern (18 bp):
ATTTTGAAAAATATTTTG
Found at i:90370986 original size:40 final size:40
Alignment explanation
Indices: 90370942--90371319 Score: 519
Period size: 40 Copynumber: 9.5 Consensus size: 40
90370932 ACCGCATGAT
* * * * *
90370942 TGCTCTTCGGGACCTAGCCCGGATATAACACCAGCACAAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
** * * *
90370982 TGCTCTTCGGGGTTTAGCACGAATATATCACCTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCA-CTAGCACGAA
* *
90371023 TGCTCTTCGGAAC-TAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
*
90371062 TGCTCTTCGAGACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
*
90371102 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCATGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
*
90371142 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCATGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
**
90371182 TGCTCTTCGAAACTTAGCCCGGAT-CATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
* *
90371221 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
* *
90371261 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCA-GAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
* *
90371300 TGCTCTTCGAGATTTAGCCC
1 TGCTCTTCGGGACTTAGCCC
90371320 AGACATTTCA
Statistics
Matches: 306, Mismatches: 29, Indels: 7
0.89 0.08 0.02
Matches are distributed among these distances:
39 76 0.25
40 212 0.69
41 18 0.06
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (40 bp):
TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
Found at i:90371236 original size:159 final size:159
Alignment explanation
Indices: 90370942--90371319 Score: 546
Period size: 159 Copynumber: 2.4 Consensus size: 159
90370932 ACCGCATGAT
* * * * * * *
90370942 TGCTCTTCGGGACCTAGCCCGGATATAACACCAGCACAAATGCTCTTCGGGGTTTAGCACGAATA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCA-GAATGCTCTTCGGGATTTAGCCCGAATA
* * *
90371007 TATCACCTAGCACGAATGCTCTTCGGAACTAGTCCGGATACATCACTAGCACGAATGCTCTTCGA
65 CATCACCTAGCACGAATGCTCTTCGAAACTAGCCCGGATACATCACTAGCACGAATGCTCTTCGA
90371072 GACTTAGCCCGGATACATCACTAGCACGAA
130 GACTTAGCCCGGATACATCACTAGCACGAA
* *
90371102 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCA-GAATGCTCTTCGGGATTTAGCCCGAATA
*
90371167 CATCA-CTAGCATGAATGCTCTTCGAAACTTAGCCCGGAT-CATCACTAGCACGAATGCTCTTCG
65 CATCACCTAGCACGAATGCTCTTCGAAAC-TAGCCCGGATACATCACTAGCACGAATGCTCTTCG
*
90371230 -GAACTTAGTCCGGATACATCACTAGCACGAA
129 AG-ACTTAGCCCGGATACATCACTAGCACGAA
* * *
90371261 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCAGAATGCTCTTCGAGATTTAGCCC
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCAGAATGCTCTTCGGGATTTAGCCC
90371320 AGACATTTCA
Statistics
Matches: 197, Mismatches: 19, Indels: 6
0.89 0.09 0.03
Matches are distributed among these distances:
158 22 0.11
159 107 0.54
160 68 0.35
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (159 bp):
TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCAGAATGCTCTTCGGGATTTAGCCCGAATAC
ATCACCTAGCACGAATGCTCTTCGAAACTAGCCCGGATACATCACTAGCACGAATGCTCTTCGAG
ACTTAGCCCGGATACATCACTAGCACGAA
Found at i:90371331 original size:119 final size:118
Alignment explanation
Indices: 90370942--90371325 Score: 520
Period size: 119 Copynumber: 3.2 Consensus size: 118
90370932 ACCGCATGAT
* * * * * *** * *
90370942 TGCTCTTCGGGACCTAGCCCGGATATAACACCAGCACAAATGCTCTTCGGGGTTTAGCACGAATA
1 TGCTCTTCGAGACTTAGCCCGGACAT--CACTAGCACGAATGCTCTTCGGAACTTAGCCCGGATA
*
90371007 TATCACCTAGCACGAATGCTCTTCGGAAC-TAGTCCGGATACATCACTAGCACGAA
64 CATCA-CTAGCACGAATGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
*
90371062 TGCTCTTCGAGACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATA
1 TGCTCTTCGAGACTTAGCCCGG--ACATCACTAGCACGAATGCTCTTCGGAACTTAGCCCGGATA
* * * *
90371127 CATCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACATCACTAGCATGAA
64 CATCACTAGCACGAATGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
* *
90371182 TGCTCTTCGAAACTTAGCCCGGATCATCACTAGCACGAATGCTCTTCGGAACTTAGTCCGGATAC
1 TGCTCTTCGAGACTTAGCCCGGA-CATCACTAGCACGAATGCTCTTCGGAACTTAGCCCGGATAC
90371247 ATCACTAGCACGAATGCTCTTCGGAACTTAGTCCGGATACATCACTAGCA-GAA
65 ATCACTAGCACGAATGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
* *
90371300 TGCTCTTCGAGATTTAGCCCAGACAT
1 TGCTCTTCGAGACTTAGCCCGGACAT
90371326 TTCACTCTCA
Statistics
Matches: 237, Mismatches: 23, Indels: 11
0.87 0.08 0.04
Matches are distributed among these distances:
117 3 0.01
118 24 0.10
119 107 0.45
120 100 0.42
122 3 0.01
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (118 bp):
TGCTCTTCGAGACTTAGCCCGGACATCACTAGCACGAATGCTCTTCGGAACTTAGCCCGGATACA
TCACTAGCACGAATGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
Found at i:90372757 original size:47 final size:47
Alignment explanation
Indices: 90372686--90373276 Score: 916
Period size: 47 Copynumber: 12.6 Consensus size: 47
90372676 GCCCTTCGGA
* * * * * *
90372686 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
90372733 CCTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
90372780 CTTAT-ACATATATACACTTTC-CATTCATCACATCGG-CATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
90372824 CTTATCACATATATACACTTTCACATTCATCAC-TCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
90372870 CTTATC-CATATTATACACTTTCAACATTCATCACATC-GCCATTAGGC
1 CTTATCACATA-TATACACTTTC-ACATTCATCACATCGGCCATTAGGC
90372917 CTTATCACATATATACAC-TTCACATTC-TC-CATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
90372961 CTTATCACATATATATACACTTTCACATTCATC-CATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
90373009 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
90373056 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
90373105 CTTATCACATAT-TACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
90373151 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
90373198 CTTATCGATATATATACACTTTCACATTCATCATATCGGCTATTAGGC
1 CTTATC-ACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
90373246 CTTATCACATATATATACAGTTTCACATTCA
1 CTTATCAC--ATATATACACTTTCACATTCA
90373277 CAACATACAG
Statistics
Matches: 510, Mismatches: 15, Indels: 36
0.91 0.03 0.06
Matches are distributed among these distances:
43 4 0.01
44 33 0.06
45 45 0.09
46 132 0.26
47 154 0.30
48 75 0.15
49 67 0.13
ACGTcount: A:0.29, C:0.29, G:0.08, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:90372924 original size:93 final size:95
Alignment explanation
Indices: 90372686--90373276 Score: 940
Period size: 95 Copynumber: 6.3 Consensus size: 95
90372676 GCCCTTCGGA
* * * * * *
90372686 CTTATCACAT-TTATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTATCACATATATACA
1 CTTATCACATATTATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACA
90372750 CTTTCACATTCATCACATCGGCCATTAGGC
66 CTTTCACATTCATCACATCGGCCATTAGGC
90372780 CTTAT-ACATA-TATACACTTTC-CATTCATCACATCGG-CATTAGGCCTTATCACATATATACA
1 CTTATCACATATTATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACA
90372841 CTTTCACATTCATCAC-TCGGCCATTAGGC
66 CTTTCACATTCATCACATCGGCCATTAGGC
90372870 CTTATC-CATATTATACACTTTCAACATTCATCACATC-GCCATTAGGCCTTATCACATATATAC
1 CTTATCACATATTATACACTTTC-ACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
90372933 AC-TTCACATTC-TC-CATCGGCCATTAGGC
65 ACTTTCACATTCATCACATCGGCCATTAGGC
90372961 CTTATCACATATATATACACTTTCACATTCATC-CATCGGCCATTAGGCCTTATCACATATATAC
1 CTTATCACATAT-TATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
90373025 ACTTTCACATTCATCACATCGGCCATTAGGC
65 ACTTTCACATTCATCACATCGGCCATTAGGC
90373056 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATAT-TAC
1 CTTATCACATAT-TATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
*
90373120 ACTTTCACATTCATCACATCGGCTATTAGGC
65 ACTTTCACATTCATCACATCGGCCATTAGGC
*
90373151 CTTATCACATA-TATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCGATATATATAC
1 CTTATCACATATTATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATC-ACATATATAC
* *
90373215 ACTTTCACATTCATCATATCGGCTATTAGGC
65 ACTTTCACATTCATCACATCGGCCATTAGGC
*
90373246 CTTATCACATATATATACAGTTTCACATTCA
1 CTTATCACATAT-TATACACTTTCACATTCA
90373277 CAACATACAG
Statistics
Matches: 469, Mismatches: 10, Indels: 33
0.92 0.02 0.06
Matches are distributed among these distances:
90 23 0.05
91 74 0.16
92 64 0.14
93 116 0.25
94 12 0.03
95 136 0.29
96 27 0.06
97 17 0.04
ACGTcount: A:0.29, C:0.29, G:0.08, T:0.33
Consensus pattern (95 bp):
CTTATCACATATTATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACA
CTTTCACATTCATCACATCGGCCATTAGGC
Found at i:90377126 original size:47 final size:47
Alignment explanation
Indices: 90377022--90377590 Score: 917
Period size: 47 Copynumber: 11.9 Consensus size: 47
90377012 TAGTATGGCG
*
90377022 TAATGGCTG-TGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCC
*
90377070 TAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
90377117 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
90377164 TAAT-GCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCC
90377212 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCC
*
90377261 TAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
*
90377308 TAACGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCC
*
90377357 TAATGGCCGATGGGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
90377404 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCC
90377453 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
* *
90377500 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGACAGGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
* * * * * *
90377547 GAGTGGCCAACGTGATGGATGTGAAAGTGTATAAATGTGATAAG
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAG
90377591 TCCCGAAGGG
Statistics
Matches: 494, Mismatches: 19, Indels: 17
0.93 0.04 0.03
Matches are distributed among these distances:
46 24 0.05
47 258 0.52
48 29 0.06
49 183 0.37
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.30
Consensus pattern (47 bp):
TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
Found at i:90377342 original size:96 final size:96
Alignment explanation
Indices: 90377022--90377590 Score: 961
Period size: 96 Copynumber: 6.0 Consensus size: 96
90377012 TAGTATGGCG
* *
90377022 TAATGGCTG-TGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATAGCCGATGTGAT
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGAT
90377086 GAATGTGAAAGTGTATATATGTGATAAGGCC
66 GAATGTGAAAGTGTATATATGTGATAAGGCC
90377117 TAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAAT-GCCGATGTGAT
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGAT
90377179 GAATGTGAAAGTGTATATATATGTGATAAGGCC
66 GAATGTGAAAGTG--TATATATGTGATAAGGCC
90377212 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGAT
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGAT
*
90377277 GAATGTGAAAGTGTATATGTGTGATAAGGCC
66 GAATGTGAAAGTGTATATATGTGATAAGGCC
* *
90377308 TAACGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGGGAT
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGAT
90377373 GAATGTGAAAGTGTATATATGTGATAAGGCC
66 GAATGTGAAAGTGTATATATGTGATAAGGCC
90377404 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGAT
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGAT
90377469 GAATGTGAAAGTGTATATATGTGATAAGGCC
66 GAATGTGAAAGTGTATATATGTGATAAGGCC
* * * * * *
90377500 TAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGACAGGGCCGAGTGGCCAACGTGAT
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGAT
* *
90377563 GGATGTGAAAGTGTATAAATGTGATAAG
66 GAATGTGAAAGTGTATATATGTGATAAG
90377591 TCCCGAAGGG
Statistics
Matches: 453, Mismatches: 15, Indels: 13
0.94 0.03 0.03
Matches are distributed among these distances:
93 24 0.05
94 76 0.17
95 55 0.12
96 252 0.56
97 22 0.05
98 24 0.05
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.30
Consensus pattern (96 bp):
TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGAT
GAATGTGAAAGTGTATATATGTGATAAGGCC
Found at i:90379886 original size:60 final size:60
Alignment explanation
Indices: 90379822--90379936 Score: 162
Period size: 60 Copynumber: 1.9 Consensus size: 60
90379812 CATGTGACTG
* *
90379822 ATTTGGGCAATTAGGGCTTCC-ACACAGGCGTGTG-TTATGAGACACATGGCCGTGTAACTA
1 ATTTGGGAAATTAGGG-TTCCTACACAGGCGTGTGCTT-TGAGACACAAGGCCGTGTAACTA
* *
90379882 ATTTGGGAAATTAGGGTTCCTACGCAGGCGTGTGCTTTGGGACACAAGGCCGTGT
1 ATTTGGGAAATTAGGGTTCCTACACAGGCGTGTGCTTTGAGACACAAGGCCGTGT
90379937 GACTGCTTTG
Statistics
Matches: 49, Mismatches: 4, Indels: 4
0.86 0.07 0.07
Matches are distributed among these distances:
59 4 0.08
60 43 0.88
61 2 0.04
ACGTcount: A:0.23, C:0.19, G:0.31, T:0.27
Consensus pattern (60 bp):
ATTTGGGAAATTAGGGTTCCTACACAGGCGTGTGCTTTGAGACACAAGGCCGTGTAACTA
Found at i:90393934 original size:17 final size:18
Alignment explanation
Indices: 90393912--90393947 Score: 56
Period size: 17 Copynumber: 2.1 Consensus size: 18
90393902 TCATAACAAC
90393912 TCACATTCTTCT-TCCTT
1 TCACATTCTTCTATCCTT
*
90393929 TCACATTTTTCTATCCTT
1 TCACATTCTTCTATCCTT
90393947 T
1 T
90393948 TCTACAACTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 11 0.65
18 6 0.35
ACGTcount: A:0.14, C:0.31, G:0.00, T:0.56
Consensus pattern (18 bp):
TCACATTCTTCTATCCTT
Found at i:90401700 original size:18 final size:17
Alignment explanation
Indices: 90401667--90401701 Score: 52
Period size: 17 Copynumber: 2.0 Consensus size: 17
90401657 TATAACAGCC
*
90401667 CACATTTTTCTTCCTTT
1 CACATTTTTCTCCCTTT
90401684 CACATTTTTCTACCCTTT
1 CACATTTTTCT-CCCTTT
90401702 TCTACAACTT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 11 0.69
18 5 0.31
ACGTcount: A:0.14, C:0.31, G:0.00, T:0.54
Consensus pattern (17 bp):
CACATTTTTCTCCCTTT
Found at i:90407770 original size:40 final size:40
Alignment explanation
Indices: 90407686--90407869 Score: 196
Period size: 40 Copynumber: 4.6 Consensus size: 40
90407676 TTGAATGCTG
* * * *
90407686 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACT-AT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTATTAAT
** *
90407725 ATCCGGACTAAGAT-CCGAAGGTATTTGTGCGAGTTATTAAT
1 -TCCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGTTATTAAT
* * *
90407766 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAGATACTAAT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTATTAAT
* *
90407806 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTT-TTAAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTATT-AAT
90407846 TCCGGGTTAAGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
90407870 GAATGAGTTA
Statistics
Matches: 123, Mismatches: 16, Indels: 10
0.83 0.11 0.07
Matches are distributed among these distances:
39 2 0.02
40 111 0.90
41 10 0.08
ACGTcount: A:0.24, C:0.21, G:0.27, T:0.28
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTATTAAT
Found at i:90407823 original size:80 final size:81
Alignment explanation
Indices: 90407686--90407866 Score: 221
Period size: 80 Copynumber: 2.3 Consensus size: 81
90407676 TTGAATGCTG
* * *
90407686 TCCGGGCTAAGTCCCGAAGG-CTTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGTATT
1 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAAGTGACTATATCCGGACTAAGATCCGAAGGCATT
* *
90407750 TGTGCGAGTTATT-AAT
66 CGTGCGAGTT-TTAAAA
**
90407766 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCG-AGAT-ACTA-ATTCCGGGTTAAG-TCCCGAAGGC
1 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAAG-TGACTATA-TCCGGACTAAGAT-CCGAAGGC
90407827 ATTCGTGCGAGTTTTAAAA
63 ATTCGTGCGAGTTTTAAAA
90407846 TCCGGGTTAAGTCCCGAAGGC
1 TCCGGGTTAAGTCCCGAAGGC
90407867 ATTGAATGAG
Statistics
Matches: 89, Mismatches: 7, Indels: 10
0.84 0.07 0.09
Matches are distributed among these distances:
79 4 0.04
80 76 0.85
81 9 0.10
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.28
Consensus pattern (81 bp):
TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAAGTGACTATATCCGGACTAAGATCCGAAGGCATT
CGTGCGAGTTTTAAAA
Found at i:90407890 original size:39 final size:39
Alignment explanation
Indices: 90407754--90407916 Score: 141
Period size: 40 Copynumber: 4.1 Consensus size: 39
90407744 GGTATTTGTG
* * * **
90407754 CGAGTTATTAATTCCGGGTTAAGTCCCGAAGGCCTTTGTG
1 CGAGTTATAAAATCCGGGTTAAGTCCCGAAGG-CATTGAA
* * **
90407794 CGAGATACT-AATTCCGGGTTAAGTCCCGAAGGCATTCGTG
1 CGAGTTA-TAAAATCCGGGTTAAGTCCCGAAGGCATT-GAA
*
90407834 CGAGTTTTAAAATCCGGGTTAAGTCCCGAAGGCATTGAA
1 CGAGTTATAAAATCCGGGTTAAGTCCCGAAGGCATTGAA
* * * *
90407873 TGAGTTAATATAA-CCGGGCTATGTCCCGAAGGCACTTGAA
1 CGAGTT-ATAAAATCCGGGTTAAGTCCCGAAGGCA-TTGAA
90407913 CGAG
1 CGAG
90407917 GAGCTAAATC
Statistics
Matches: 105, Mismatches: 13, Indels: 10
0.82 0.10 0.08
Matches are distributed among these distances:
39 29 0.28
40 75 0.71
41 1 0.01
ACGTcount: A:0.26, C:0.20, G:0.27, T:0.26
Consensus pattern (39 bp):
CGAGTTATAAAATCCGGGTTAAGTCCCGAAGGCATTGAA
Found at i:90412888 original size:46 final size:46
Alignment explanation
Indices: 90412820--90413002 Score: 267
Period size: 46 Copynumber: 4.0 Consensus size: 46
90412810 CATATATACA
* * *
90412820 CATCTCATACATATCTCACATTAGCCATTTGGCTTTACCACATATC
1 CATCTCATACACATTTCACATTAGCCATTCGGCTTTACCACATATC
* * *
90412866 CATCTCATACACGTTTCGCATTAGCCATTCGGCTTTACCTCATATC
1 CATCTCATACACATTTCACATTAGCCATTCGGCTTTACCACATATC
* * * **
90412912 CATCTCATACACGTTTCGCATTAGCCATTCGACTTTACCTTATATC
1 CATCTCATACACATTTCACATTAGCCATTCGGCTTTACCACATATC
90412958 CATCTCATACACATTTCACATTAGCCATTCGGCTTTACCACATAT
1 CATCTCATACACATTTCACATTAGCCATTCGGCTTTACCACATAT
90413003 ATGCATGTTC
Statistics
Matches: 124, Mismatches: 13, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
46 124 1.00
ACGTcount: A:0.26, C:0.31, G:0.08, T:0.35
Consensus pattern (46 bp):
CATCTCATACACATTTCACATTAGCCATTCGGCTTTACCACATATC
Found at i:90413052 original size:47 final size:47
Alignment explanation
Indices: 90412973--90413073 Score: 157
Period size: 47 Copynumber: 2.1 Consensus size: 47
90412963 CATACACATT
* *
90412973 TCACATTAGCCATTCGGCTTTACCACATATATGCATGTTCACATTCA
1 TCACATTAGCCATTCGGCCTTACCACACATATGCATGTTCACATTCA
* * *
90413020 TCACATTGGCCATTTGGCCTTATCACACATATGCATGTTCACATTCA
1 TCACATTAGCCATTCGGCCTTACCACACATATGCATGTTCACATTCA
90413067 TCACATT
1 TCACATT
90413074 TAATCCTAAA
Statistics
Matches: 49, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
47 49 1.00
ACGTcount: A:0.27, C:0.28, G:0.11, T:0.35
Consensus pattern (47 bp):
TCACATTAGCCATTCGGCCTTACCACACATATGCATGTTCACATTCA
Found at i:90413070 original size:25 final size:25
Alignment explanation
Indices: 90412996--90413071 Score: 63
Period size: 24 Copynumber: 3.2 Consensus size: 25
90412986 TCGGCTTTAC
*
90412996 CACATATATGCATGTTCACATTCAT
1 CACACATATGCATGTTCACATTCAT
** *
90413021 --CACAT-TGGCCAT-TTGGCCTT-AT
1 CACACATAT-G-CATGTTCACATTCAT
90413043 CACACATATGCATGTTCACATTCAT
1 CACACATATGCATGTTCACATTCAT
90413068 CACA
1 CACA
90413072 TTTAATCCTA
Statistics
Matches: 37, Mismatches: 7, Indels: 14
0.64 0.12 0.24
Matches are distributed among these distances:
22 3 0.08
23 13 0.35
24 14 0.38
25 7 0.19
ACGTcount: A:0.29, C:0.28, G:0.11, T:0.33
Consensus pattern (25 bp):
CACACATATGCATGTTCACATTCAT
Found at i:90417325 original size:14 final size:14
Alignment explanation
Indices: 90417306--90417333 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
90417296 TTGGTCTTAG
90417306 TGCTAGTGGGAGAT
1 TGCTAGTGGGAGAT
90417320 TGCTAGTGGGAGAT
1 TGCTAGTGGGAGAT
90417334 CGTCACACAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.21, C:0.07, G:0.43, T:0.29
Consensus pattern (14 bp):
TGCTAGTGGGAGAT
Found at i:90424508 original size:18 final size:18
Alignment explanation
Indices: 90424485--90424521 Score: 65
Period size: 18 Copynumber: 2.1 Consensus size: 18
90424475 CATTATGACT
90424485 GCCTCTCGACATGCTAAC
1 GCCTCTCGACATGCTAAC
*
90424503 GCCTCTTGACATGCTAAC
1 GCCTCTCGACATGCTAAC
90424521 G
1 G
90424522 TCAAGAGTGT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.22, C:0.35, G:0.19, T:0.24
Consensus pattern (18 bp):
GCCTCTCGACATGCTAAC
Found at i:90425576 original size:37 final size:37
Alignment explanation
Indices: 90425517--90425618 Score: 177
Period size: 37 Copynumber: 2.8 Consensus size: 37
90425507 AGCTCAGACG
* *
90425517 AAATCTCCACACGAAGTGATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
90425554 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
90425591 TAATCTCCACACGTAGTCATCGGGTCTT
1 AAATCTCCACACGTAGTCATCGGGTCTT
90425619 TAGAGCTCGG
Statistics
Matches: 62, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 62 1.00
ACGTcount: A:0.26, C:0.30, G:0.20, T:0.24
Consensus pattern (37 bp):
AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
Found at i:90425815 original size:47 final size:47
Alignment explanation
Indices: 90425737--90426143 Score: 661
Period size: 47 Copynumber: 8.6 Consensus size: 47
90425727 CCCTTCGGGA
* * * * * *
90425737 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
90425784 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
90425831 CTTATCACATATATACACTTTCACATTCATCACGTCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
90425878 CTTATCACATATATATACACTTTCACATTCATCACGTCGGCTATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
90425927 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
90425974 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
90426021 CTTATCACATATATACATTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
90426068 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
90426117 CTTATCACATATATACACTTTCACATT
1 CTTATCACATATATACACTTTCACATT
90426144 TATTCAAATA
Statistics
Matches: 338, Mismatches: 18, Indels: 8
0.93 0.05 0.02
Matches are distributed among these distances:
47 246 0.73
49 92 0.27
ACGTcount: A:0.29, C:0.29, G:0.09, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:90426006 original size:143 final size:143
Alignment explanation
Indices: 90425737--90426143 Score: 669
Period size: 143 Copynumber: 2.9 Consensus size: 143
90425727 CCCTTCGGGA
* * * * * *
90425737 CTTATCACAT-T-TATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACGTCGGCCATTAGGCCTTATCACATATATAC
*
90425800 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACG
66 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
90425865 TCGGCCATTAGGC
131 TCGGCCATTAGGC
*
90425878 CTTATCACATATATATACACTTTCACATTCATCACGTCGGCTATTAGGCCTTATCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACGTCGGCCATTAGGCCTTATCACATATATAC
90425943 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
66 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
*
90426008 TCGGCTATTAGGC
131 TCGGCCATTAGGC
* *
90426021 CTTATCAC--ATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAT
1 CTTATCACATATATATACACTTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC--ATATAT
90426084 ACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATT
64 ACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATT
90426144 TATTCAAATA
Statistics
Matches: 250, Mismatches: 12, Indels: 6
0.93 0.04 0.02
Matches are distributed among these distances:
141 54 0.22
142 1 0.00
143 195 0.78
ACGTcount: A:0.29, C:0.29, G:0.09, T:0.33
Consensus pattern (143 bp):
CTTATCACATATATATACACTTTCACATTCATCACGTCGGCCATTAGGCCTTATCACATATATAC
ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
TCGGCCATTAGGC
Found at i:90426061 original size:190 final size:190
Alignment explanation
Indices: 90425737--90426143 Score: 697
Period size: 190 Copynumber: 2.1 Consensus size: 190
90425727 CCCTTCGGGA
* * * * * *
90425737 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCACTAGGCCCTATCACATATATACAC
*
90425802 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACGTC
66 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
* *
90425867 GGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACGTCGGCTATTAGGC
131 GGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
90425927 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCACTAGGCCCTATCACATATATACAC
* *
90425992 TTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATACATTTTCACATTCATCACATC
66 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
90426057 GGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
131 GGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
90426117 CTTATCACATATATACACTTTCACATT
1 CTTATCACATATATACACTTTCACATT
90426144 TATTCAAATA
Statistics
Matches: 204, Mismatches: 13, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
190 204 1.00
ACGTcount: A:0.29, C:0.29, G:0.09, T:0.33
Consensus pattern (190 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCACTAGGCCCTATCACATATATACAC
TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
GGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:90434675 original size:47 final size:47
Alignment explanation
Indices: 90434609--90435082 Score: 849
Period size: 47 Copynumber: 10.1 Consensus size: 47
90434599 GAAATGATAG
90434609 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
90434656 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
90434703 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
90434750 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
90434797 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
90434844 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
90434891 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
90434938 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
90434985 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
* * * * * * * *
90435032 CAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATAAATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
90435079 TAAG
1 TAAG
90435083 TCCCGAAGGG
Statistics
Matches: 411, Mismatches: 16, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
47 411 1.00
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.29
Consensus pattern (47 bp):
TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
Found at i:90435257 original size:37 final size:37
Alignment explanation
Indices: 90435201--90435279 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
90435191 CCGAGCTCTA
* * *
90435201 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
*
90435238 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
90435275 AAGAC
1 AAGAC
90435280 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.24, C:0.19, G:0.32, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:90437062 original size:43 final size:43
Alignment explanation
Indices: 90437014--90437116 Score: 206
Period size: 43 Copynumber: 2.4 Consensus size: 43
90437004 TTGGTTTTCA
90437014 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
1 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
90437057 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
1 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
90437100 GCACTAAGTGTGCGGGC
1 GCACTAAGTGTGCGGGC
90437117 TTGAAATGCA
Statistics
Matches: 60, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 60 1.00
ACGTcount: A:0.22, C:0.16, G:0.36, T:0.26
Consensus pattern (43 bp):
GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
Found at i:90437133 original size:29 final size:29
Alignment explanation
Indices: 90437098--90437171 Score: 105
Period size: 29 Copynumber: 2.6 Consensus size: 29
90437088 GTTGTGAGAT
* *
90437098 TGGCACTAAGTGTGCGGGCTTGAAA-TGCA
1 TGGCACTAAGTGTGCGAG-TTGAAAGTACA
*
90437127 TGGCACTAAGTGTGCGAGTTTAAAGTACA
1 TGGCACTAAGTGTGCGAGTTGAAAGTACA
90437156 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
90437172 TGGTTGATTA
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
28 5 0.12
29 36 0.88
ACGTcount: A:0.26, C:0.16, G:0.32, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGTTGAAAGTACA
Found at i:90437607 original size:39 final size:39
Alignment explanation
Indices: 90437482--90437621 Score: 144
Period size: 40 Copynumber: 3.6 Consensus size: 39
90437472 TCGAATGATG
* * * * * *
90437482 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGACCCGAAGGCATTGTGC-GAGTTACTAAA
* *
90437522 TCCGGACTAAGATCCGAAGGCATTGTGCGAG-TACT-AA
1 TCCGGGCTAAGACCCGAAGGCATTGTGCGAGTTACTAAA
90437559 TCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGACCCGAAGGCATT-GTGCGAGTTACTAAA
*
90437598 TCCGGGCTAAG-TCCGAAGAGCATT
1 TCCGGGCTAAGACCCGAAG-GCATT
90437622 CATGCTAGTG
Statistics
Matches: 85, Mismatches: 11, Indels: 8
0.82 0.11 0.08
Matches are distributed among these distances:
36 11 0.13
37 18 0.21
38 6 0.07
39 21 0.25
40 29 0.34
ACGTcount: A:0.26, C:0.24, G:0.29, T:0.22
Consensus pattern (39 bp):
TCCGGGCTAAGACCCGAAGGCATTGTGCGAGTTACTAAA
Found at i:90437640 original size:39 final size:39
Alignment explanation
Indices: 90437597--90437751 Score: 229
Period size: 40 Copynumber: 3.9 Consensus size: 39
90437587 GAGTTACTAA
90437597 ATCCGGGCTAAGTCCGAAGAGCATTCATGCTAGTGATGT
1 ATCCGGGCTAAGTCCGAAGAGCATTCATGCTAGTGATGT
90437636 ATCCGGGCTAAGTCCGAAGAGCATTCATGCTAGTGATGT
1 ATCCGGGCTAAGTCCGAAGAGCATTCATGCTAGTGATGT
* * * *
90437675 ATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTGGTGTTAT
1 ATCCGGGCTAAG-TCCGAAGAGCATTCATGCTAGTGATGT
* * *
90437715 ATCCGGGCTAGGTCCCGAAGAGCAATCATGCTGGTGA
1 ATCCGGGCTAAGT-CCGAAGAGCATTCATGCTAGTGA
90437752 CGTGTATTCG
Statistics
Matches: 106, Mismatches: 8, Indels: 3
0.91 0.07 0.03
Matches are distributed among these distances:
39 52 0.49
40 54 0.51
ACGTcount: A:0.24, C:0.21, G:0.30, T:0.25
Consensus pattern (39 bp):
ATCCGGGCTAAGTCCGAAGAGCATTCATGCTAGTGATGT
Found at i:90437718 original size:40 final size:39
Alignment explanation
Indices: 90437558--90437751 Score: 221
Period size: 39 Copynumber: 4.9 Consensus size: 39
90437548 GCGAGTACTA
* ** * *
90437558 ATCCGGGCTAAGCCCGAAG-GCATTGGTGC-GAGTTACTAA
1 ATCCGGGCTAAGTCCGAAGAGCATTCATGCTG-GTGA-TAT
* *
90437597 ATCCGGGCTAAGTCCGAAGAGCATTCATGCTAGTGATGT
1 ATCCGGGCTAAGTCCGAAGAGCATTCATGCTGGTGATAT
* *
90437636 ATCCGGGCTAAGTCCGAAGAGCATTCATGCTAGTGATGT
1 ATCCGGGCTAAGTCCGAAGAGCATTCATGCTGGTGATAT
* *
90437675 ATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTGGTGTTAT
1 ATCCGGGCTAAG-TCCGAAGAGCATTCATGCTGGTGATAT
* *
90437715 ATCCGGGCTAGGTCCCGAAGAGCAATCATGCTGGTGA
1 ATCCGGGCTAAGT-CCGAAGAGCATTCATGCTGGTGA
90437752 CGTGTATTCG
Statistics
Matches: 136, Mismatches: 15, Indels: 7
0.86 0.09 0.04
Matches are distributed among these distances:
39 71 0.52
40 65 0.48
ACGTcount: A:0.24, C:0.22, G:0.30, T:0.24
Consensus pattern (39 bp):
ATCCGGGCTAAGTCCGAAGAGCATTCATGCTGGTGATAT
Found at i:90437722 original size:79 final size:79
Alignment explanation
Indices: 90437482--90437752 Score: 254
Period size: 79 Copynumber: 3.5 Consensus size: 79
90437472 TCGAATGATG
** * *
90437482 TCCGGGCTAAGTCCCGAAG-GC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAG-GCA
1 TCCGGGCTAAGT-CCGAAGAGCATTCATGCT-AGTGACTATATCCGGGCTAAG-TCCGAAGAGCA
90437544 TT-GTGC-GAGT-ACTA-A
63 TTCGTGCTG-GTGA-TATA
* ** * * *
90437559 TCCGGGCTAAGCCCGAAG-GCATTGGTGCGAGTTACTAAATCCGGGCTAAGTCCGAAGAGCATTC
1 TCCGGGCTAAGTCCGAAGAGCATTCATGCTAGTGACTATATCCGGGCTAAGTCCGAAGAGCATTC
* * *
90437623 ATGCTAGTGATGTA
66 GTGCTGGTGATATA
*
90437637 TCCGGGCTAAGTCCGAAGAGCATTCATGCTAGTGA-TGTATCCGGGCTAAGTTCCGAAGAGCATT
1 TCCGGGCTAAGTCCGAAGAGCATTCATGCTAGTGACTATATCCGGGCTAAG-TCCGAAGAGCATT
*
90437701 CGTGCTGGTGTTATA
65 CGTGCTGGTGATATA
* * *
90437716 TCCGGGCTAGGTCCCGAAGAGCAATCATGCTGGTGAC
1 TCCGGGCTAAGT-CCGAAGAGCATTCATGCTAGTGAC
90437753 GTGTATTCGG
Statistics
Matches: 160, Mismatches: 24, Indels: 16
0.80 0.12 0.08
Matches are distributed among these distances:
75 7 0.04
76 30 0.19
77 23 0.14
78 32 0.20
79 47 0.29
80 21 0.13
ACGTcount: A:0.24, C:0.23, G:0.29, T:0.24
Consensus pattern (79 bp):
TCCGGGCTAAGTCCGAAGAGCATTCATGCTAGTGACTATATCCGGGCTAAGTCCGAAGAGCATTC
GTGCTGGTGATATA
Found at i:90441390 original size:47 final size:47
Alignment explanation
Indices: 90441324--90441840 Score: 857
Period size: 47 Copynumber: 11.1 Consensus size: 47
90441314 GAAATGATAG
90441324 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
90441371 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATG-
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
90441417 TGAAGGCCTAATGGCCGATGTGATGAAT-TGAAA--GTATATATGTGA
1 T-AAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
90441462 T-AGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
90441508 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
90441555 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
90441602 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
90441649 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT-ATATGTGA
*
90441697 TAGGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
90441744 T-AGGCCTAATGGCCGATGTGATGAATGTGAAAGTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
* * * * * * * *
90441790 CAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATAAATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
90441837 TAAG
1 TAAG
90441841 TCCCGAAGGG
Statistics
Matches: 444, Mismatches: 18, Indels: 16
0.93 0.04 0.03
Matches are distributed among these distances:
43 25 0.06
44 15 0.03
45 1 0.00
46 62 0.14
47 295 0.66
48 46 0.10
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.29
Consensus pattern (47 bp):
TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
Found at i:90442002 original size:34 final size:37
Alignment explanation
Indices: 90441959--90442034 Score: 104
Period size: 34 Copynumber: 2.1 Consensus size: 37
90441949 CCGAGCTCTA
* *
90441959 AAGACCCGATGACTACGTG-GG-GATTTTGTCC-GGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
*
90441993 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
90442030 AAGAC
1 AAGAC
90442035 TTCGTAATAA
Statistics
Matches: 36, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
34 17 0.47
35 2 0.06
36 9 0.25
37 8 0.22
ACGTcount: A:0.25, C:0.20, G:0.30, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:90443769 original size:40 final size:39
Alignment explanation
Indices: 90443687--90443870 Score: 208
Period size: 40 Copynumber: 4.6 Consensus size: 39
90443677 TATTCGAATG
*
90443687 ATATCCGGGCTAAGTCCGAAGGCTTTTGTGCTAGGTGACT
1 ATATCCGGGCTAAGTCCGAAGGCATTTGTGCTA-GTGACT
* * * *
90443727 ATAACCGGACTAAGATCCGAAGGCATTCGTGCGAGTTG-CT
1 ATATCCGGGCTAAG-TCCGAAGGCATTTGTGCTAG-TGACT
* * *
90443767 ATATCCGGGCTAAGACCCGAAGTCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAG-TCCGAAGGCATTTGTGCTAGTGACT
* *
90443807 ATATCCGGGCTAAGTCCCGAAGGCATCTGTGCTAGTGACC
1 ATATCCGGGCTAAGT-CCGAAGGCATTTGTGCTAGTGACT
*
90443847 ATATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAG-TCCGAAGGC
90443871 CATGTGCAAG
Statistics
Matches: 121, Mismatches: 18, Indels: 10
0.81 0.12 0.07
Matches are distributed among these distances:
39 1 0.01
40 102 0.84
41 18 0.15
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.23
Consensus pattern (39 bp):
ATATCCGGGCTAAGTCCGAAGGCATTTGTGCTAGTGACT
Found at i:90443820 original size:80 final size:81
Alignment explanation
Indices: 90443687--90443870 Score: 234
Period size: 80 Copynumber: 2.3 Consensus size: 81
90443677 TATTCGAATG
* * *
90443687 ATATCCGGGCTAAG-TCCGAAGGCTTTTGTGCTAGGTGACTATAACCGGACTAAGAT-CCGAAGG
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGGCGACTATAACCGGACTAAG-TCCCGAAGG
*
90443750 CAT-TCGTGCGAGTTG-CT
65 CATCT-GTGCGAG-TGACC
* * *
90443767 ATATCCGGGCTAAGACCCGAAGTCATTTGTGCTA-GCGACTATATCCGGGCTAAGTCCCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGGCGACTATAACCGGACTAAGTCCCGAAGGC
*
90443831 ATCTGTGCTAGTGACC
66 ATCTGTGCGAGTGACC
90443847 ATATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGC
90443871 CATGTGCAAG
Statistics
Matches: 91, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
79 3 0.03
80 71 0.78
81 17 0.19
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.23
Consensus pattern (81 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGGCGACTATAACCGGACTAAGTCCCGAAGGC
ATCTGTGCGAGTGACC
Found at i:90445532 original size:81 final size:81
Alignment explanation
Indices: 90445447--90445645 Score: 200
Period size: 81 Copynumber: 2.5 Consensus size: 81
90445437 TGTCAGGGGG
* * * * *
90445447 TAAAACCACTCGCAAGAACCCTTTGTGGGCTCTCTTTGTCTAACAATATACATTATATGGATATA
1 TAAAACCACTCACGAGAACCCTTCGTGGGCTCTCTTTATCTAACAATATACATTATACGGATATA
*
90445512 CAAACATGGAAAGAGA
66 CAAACATGCAAAGAGA
* * *** * * * * *
90445528 TAAAACCACCCACGTGAATAGTTCGTGGGTTCTCTTTATCTTACATTATTCATTTTACGGATATA
1 TAAAACCACTCACGAGAACCCTTCGTGGGCTCTCTTTATCTAACAATATACATTATACGGATATA
* *
90445593 CAAACATGCAAAGGGG
66 CAAACATGCAAAGAGA
* ** *
90445609 TATAACCACTCTTGAGAACCCTTCGTGGGCTCCCTTT
1 TAAAACCACTCACGAGAACCCTTCGTGGGCTCTCTTT
90445646 CTGAGATTTA
Statistics
Matches: 90, Mismatches: 28, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
81 90 1.00
ACGTcount: A:0.31, C:0.22, G:0.17, T:0.30
Consensus pattern (81 bp):
TAAAACCACTCACGAGAACCCTTCGTGGGCTCTCTTTATCTAACAATATACATTATACGGATATA
CAAACATGCAAAGAGA
Found at i:90451659 original size:40 final size:40
Alignment explanation
Indices: 90451556--90451754 Score: 253
Period size: 40 Copynumber: 5.0 Consensus size: 40
90451546 TGATAACCGA
* * *
90451556 GCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-ATTCCGG
1 GCTAAGTCCCGAAGGCATTCGTGCGAGTTACTATA-TCCGG
* *
90451596 GCTAAG-CCCGAAGGCAATT-GTGCGAATTATTATATCCGG
1 GCTAAGTCCCGAAGGC-ATTCGTGCGAGTTACTATATCCGG
*
90451635 GCTAAGTCTCGAAGGCATTCGTGCGAGTTACTATATCCGG
1 GCTAAGTCCCGAAGGCATTCGTGCGAGTTACTATATCCGG
* *
90451675 GCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGG
1 GCTAAGTCCCGAAGGCATTCGTGCGAGTTACTATATCCGG
* *
90451715 GCTATGTCCCGAAGGCATTCGAGCGAG-TAGCTATATCCGG
1 GCTAAGTCCCGAAGGCATTCGTGCGAGTTA-CTATATCCGG
90451755 TTGAATTCCG
Statistics
Matches: 140, Mismatches: 14, Indels: 10
0.85 0.09 0.06
Matches are distributed among these distances:
39 34 0.24
40 106 0.76
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.26
Consensus pattern (40 bp):
GCTAAGTCCCGAAGGCATTCGTGCGAGTTACTATATCCGG
Found at i:90455077 original size:24 final size:23
Alignment explanation
Indices: 90455032--90455102 Score: 61
Period size: 25 Copynumber: 2.9 Consensus size: 23
90455022 CAAGATAACA
* *
90455032 CGCCACAAAGCTTTCAAGTGAATT
1 CGCCACAAGGCTTTCCA-TGAATT
*
90455056 TGCCACAGAGGCTTTCCATGAAATT
1 CGCCACA-AGGCTTTCCATG-AATT
* *
90455081 CACCACAAAGGCTTTTCATGAA
1 CGCCAC-AAGGCTTTCCATGAA
90455103 ATTCATGTTT
Statistics
Matches: 38, Mismatches: 6, Indels: 6
0.76 0.12 0.12
Matches are distributed among these distances:
24 10 0.26
25 27 0.71
26 1 0.03
ACGTcount: A:0.32, C:0.25, G:0.17, T:0.25
Consensus pattern (23 bp):
CGCCACAAGGCTTTCCATGAATT
Found at i:90455080 original size:25 final size:25
Alignment explanation
Indices: 90455058--90455107 Score: 82
Period size: 25 Copynumber: 2.0 Consensus size: 25
90455048 AGTGAATTTG
*
90455058 CCACAGAGGCTTTCCATGAAATTCA
1 CCACAAAGGCTTTCCATGAAATTCA
*
90455083 CCACAAAGGCTTTTCATGAAATTCA
1 CCACAAAGGCTTTCCATGAAATTCA
90455108 TGTTTACTAT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.34, C:0.26, G:0.14, T:0.26
Consensus pattern (25 bp):
CCACAAAGGCTTTCCATGAAATTCA
Found at i:90468638 original size:40 final size:39
Alignment explanation
Indices: 90468588--90468744 Score: 165
Period size: 39 Copynumber: 4.0 Consensus size: 39
90468578 CAAATCCAAT
* * * *
90468588 CACCACCACAAAACATGCGGTACTTTAAGCCCGGATATAA
1 CACCAGCACAAAGCCTGCGGGACTTT-AGCCCGGATATAA
* **
90468628 TACCAGCACAAAGCCTGCGGGACTTTAGCCAAGATATAA
1 CACCAGCACAAAGCCTGCGGGACTTTAGCCCGGATATAA
* *
90468667 CACCAGCACGAATGCCTTCGGGAC-TTAGCCCGGATATAA
1 CACCAGCAC-AAAGCCTGCGGGACTTTAGCCCGGATATAA
* * *
90468706 CACCAGCACGAATGCCTTCGGGAC-TTAGCCCGAATATAA
1 CACCAGCAC-AAAGCCTGCGGGACTTTAGCCCGGATATAA
90468745 TTCTCCATTA
Statistics
Matches: 103, Mismatches: 13, Indels: 3
0.87 0.11 0.03
Matches are distributed among these distances:
39 70 0.68
40 33 0.32
ACGTcount: A:0.33, C:0.29, G:0.20, T:0.18
Consensus pattern (39 bp):
CACCAGCACAAAGCCTGCGGGACTTTAGCCCGGATATAA
Found at i:90468675 original size:39 final size:39
Alignment explanation
Indices: 90468615--90468744 Score: 172
Period size: 39 Copynumber: 3.3 Consensus size: 39
90468605 CGGTACTTTA
*
90468615 AGCCCGGATATAATACCAGCAC-AAAGCCTGCGGGACTTT
1 AGCCCGGATATAACACCAGCACGAAAGCCTGCGGGAC-TT
** * *
90468654 AGCCAAGATATAACACCAGCACGAATGCCTTCGGGACTT
1 AGCCCGGATATAACACCAGCACGAAAGCCTGCGGGACTT
* *
90468693 AGCCCGGATATAACACCAGCACGAATGCCTTCGGGACTT
1 AGCCCGGATATAACACCAGCACGAAAGCCTGCGGGACTT
*
90468732 AGCCCGAATATAA
1 AGCCCGGATATAA
90468745 TTCTCCATTA
Statistics
Matches: 82, Mismatches: 8, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
39 70 0.85
40 12 0.15
ACGTcount: A:0.32, C:0.28, G:0.22, T:0.18
Consensus pattern (39 bp):
AGCCCGGATATAACACCAGCACGAAAGCCTGCGGGACTT
Found at i:90476862 original size:47 final size:47
Alignment explanation
Indices: 90476784--90478044 Score: 2027
Period size: 47 Copynumber: 26.6 Consensus size: 47
90476774 CCCTTCGAGA
* * * * * *
90476784 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
90476831 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
90476878 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
90476925 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
90476972 CTTATCACATATATACACTTTCACATTCATCACATCAGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
90477019 CTTATCACATATATACACTTTCATATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
90477066 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
90477115 CTTATCGCATATATACATTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
90477162 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
90477209 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
90477258 CTTATCGCATATATACACTTTCACGTTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
90477305 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTACGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
90477352 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
90477401 CTTATCGCATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
90477448 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATAT--ACACTTTCACATTCATCACATCGGCCATTAGGC
* *
90477497 CTTATCACATATATACACTTTCACATTCATCACATGGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
90477544 CTTATCGCATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
90477591 CTTATCACATATATGCACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
90477638 CTTATCACATATATAAACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
90477685 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
90477732 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
90477779 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
90477828 CTTATCGCATATATACACTTTCATATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
90477875 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
90477924 CTTATCGCATATATACACTTTCACATTCATCACATCGACTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
90477971 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
90478018 CTTATCACATATATACACTTTCACATT
1 CTTATCACATATATACACTTTCACATT
90478045 TATTCAAATA
Statistics
Matches: 1125, Mismatches: 77, Indels: 24
0.92 0.06 0.02
Matches are distributed among these distances:
47 861 0.77
49 264 0.23
ACGTcount: A:0.29, C:0.29, G:0.09, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:90477128 original size:143 final size:143
Alignment explanation
Indices: 90476784--90478044 Score: 2110
Period size: 143 Copynumber: 8.9 Consensus size: 143
90476774 CCCTTCGAGA
* * * * * *
90476784 CTTATCACAT-T-TATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCGCATATATAC
*
90476847 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
66 ACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
*
90476912 TCGGCCATTAGAC
131 TCGGCCATTAGGC
* * *
90476925 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCGCATATATAC
* *
90476988 ACTTTCACATTCATCACATCAGCTATTAGGCCTTATCACATATATACACTTTCATATTCATCACA
66 ACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
90477053 TCGGCCATTAGGC
131 TCGGCCATTAGGC
90477066 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCGCATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCGCATATATAC
*
90477131 ATTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
66 ACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
90477196 TCGGCCATTAGGC
131 TCGGCCATTAGGC
90477209 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCGCATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCGCATATATAC
*
90477274 ACTTTCACGTTCATCACATCGGCTATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
66 ACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
*
90477339 TCGGCCATTACGC
131 TCGGCCATTAGGC
90477352 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCGCATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCGCATATATAC
*
90477417 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACACTTTCACATTCATCA
66 ACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATAT--ACACTTTCACATTCATCA
90477482 CATCGGCCATTAGGC
129 CATCGGCCATTAGGC
*
90477497 CTTATCAC--ATATATACACTTTCACATTCATCACATGGGCCATTCGGCCTTATCGCATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCGCATATATAC
*
90477560 ACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATGCACTTTCACATTCATCACA
66 ACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
90477625 TCGGCCATTAGGC
131 TCGGCCATTAGGC
* * * *
90477638 CTTATCACATATATA-A-ACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCGCATATATAC
*
90477701 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
66 ACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
90477766 TCGGCCATTAGGC
131 TCGGCCATTAGGC
90477779 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCGCATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCGCATATATAC
* *
90477844 ACTTTCATATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCA
66 ACTTTCACATTCATCACATCGGCTATTAGGCCTTATCAC--ATATATACACTTTCACATTCATCA
* *
90477909 CATTGGCCATTCGGC
129 CATCGGCCATTAGGC
* * * * * *
90477924 CTTATCGC--ATATATACACTTTCACATTCATCACATCGACTATTAGGCCTTATCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCGCATATATAC
90477987 ACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATACACTTTCACATT
66 ACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATACACTTTCACATT
90478045 TATTCAAATA
Statistics
Matches: 1061, Mismatches: 47, Indels: 24
0.94 0.04 0.02
Matches are distributed among these distances:
140 1 0.00
141 328 0.31
142 2 0.00
143 646 0.61
145 84 0.08
ACGTcount: A:0.29, C:0.29, G:0.09, T:0.33
Consensus pattern (143 bp):
CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCGCATATATAC
ACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
TCGGCCATTAGGC
Found at i:90481856 original size:40 final size:40
Alignment explanation
Indices: 90481795--90482113 Score: 487
Period size: 40 Copynumber: 8.0 Consensus size: 40
90481785 ATCTTGTCCA
* *
90481795 AGCACGAATGC-CTTTGGGACTTAGCCCGGATACATCACC
1 AGCACGAATGCTCTTCGGGACTTAGCCCGGATACATCACT
* *
90481834 AGCACGAATGCTCTTTGGGACTTAGCCCGGATACATCACC
1 AGCACGAATGCTCTTCGGGACTTAGCCCGGATACATCACT
* * *
90481874 AGCATGAATGCTCTTTGGGACTTAGCCCGGATACATCACC
1 AGCACGAATGCTCTTCGGGACTTAGCCCGGATACATCACT
*
90481914 AGCACGAATGCTCTTTGGGACTTAGCCCGGATACATCACT
1 AGCACGAATGCTCTTCGGGACTTAGCCCGGATACATCACT
*
90481954 AGCACGAATGCTCCTCGGGACTTAGCCCGGATACATCACT
1 AGCACGAATGCTCTTCGGGACTTAGCCCGGATACATCACT
* *
90481994 AGCACGAATGCTCCTCGGGACTTAGCCCGGATATATCACT
1 AGCACGAATGCTCTTCGGGACTTAGCCCGGATACATCACT
* * * *
90482034 AGCACGAATGCTCCTCGGGACTTAGTCCGGATATATCATT
1 AGCACGAATGCTCTTCGGGACTTAGCCCGGATACATCACT
*
90482074 AGCACGAATGCTCTTCGGGACTTAGCCCGGATATATCACT
1 AGCACGAATGCTCTTCGGGACTTAGCCCGGATACATCACT
90482114 CTCAATTCTC
Statistics
Matches: 268, Mismatches: 11, Indels: 1
0.96 0.04 0.00
Matches are distributed among these distances:
39 11 0.04
40 257 0.96
ACGTcount: A:0.25, C:0.29, G:0.23, T:0.24
Consensus pattern (40 bp):
AGCACGAATGCTCTTCGGGACTTAGCCCGGATACATCACT
Found at i:90483606 original size:47 final size:47
Alignment explanation
Indices: 90483530--90483648 Score: 148
Period size: 47 Copynumber: 2.5 Consensus size: 47
90483520 CTTCGGGACT
* * * * *
90483530 TATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCC
1 TATCACATATATACACTTTCACATTCATCACATCGGCCACTAGGCCC
* * * *
90483577 TGTCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCT
1 TATCACATATATACACTTTCACATTCATCACATCGGCCACTAGGCCC
*
90483624 TATCACATGTATACACTTTCACATT
1 TATCACATATATACACTTTCACATT
90483649 TATTCAAATA
Statistics
Matches: 61, Mismatches: 11, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
47 61 1.00
ACGTcount: A:0.27, C:0.30, G:0.09, T:0.34
Consensus pattern (47 bp):
TATCACATATATACACTTTCACATTCATCACATCGGCCACTAGGCCC
Found at i:90492661 original size:49 final size:47
Alignment explanation
Indices: 90492592--90493235 Score: 1110
Period size: 47 Copynumber: 13.5 Consensus size: 47
90492582 ATTCAGCCAA
90492592 GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
1 GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
90492639 GAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
1 GAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
90492688 GAAAGTGTATATATATGTGATAAGG-CTAATGGCCGATGTGATGAATGT
1 GAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
90492736 GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
1 GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
90492783 GAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
1 GAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
90492832 GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
1 GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
90492879 GAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
1 GAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
90492928 GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
1 GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
90492975 GAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
1 GAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
90493024 GAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
1 GAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
90493073 GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
1 GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
90493120 GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
1 GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
* * * * * *
90493167 GAAAGTGTATATATGTGACAGGGCCGAGTGGCCAATGTGATGGATGT
1 GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
*
90493214 GAAAGTGTATAAATGTGATAAG
1 GAAAGTGTATATATGTGATAAG
90493236 TCCCGAAGGG
Statistics
Matches: 579, Mismatches: 9, Indels: 18
0.96 0.01 0.03
Matches are distributed among these distances:
46 16 0.03
47 278 0.48
48 30 0.05
49 255 0.44
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.30
Consensus pattern (47 bp):
GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
Found at i:90492874 original size:96 final size:96
Alignment explanation
Indices: 90492592--90493235 Score: 1140
Period size: 96 Copynumber: 6.7 Consensus size: 96
90492582 ATTCAGCCAA
90492592 GAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATAT
1 GAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATAT
90492655 GTGATAAGGCCTAATGGCCGATGTGATGAATGT
64 GTGATAAGGCCTAATGGCCGATGTGATGAATGT
90492688 GAAAGTGTATATATATGTGATAAGG-CTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGT
1 GAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGT
90492752 GATAAGGCCTAATGGCCGATGTGATGAATGT
66 GATAAGGCCTAATGGCCGATGTGATGAATGT
90492783 GAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGT
1 GAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGT
90492848 GATAAGGCCTAATGGCCGATGTGATGAATGT
66 GATAAGGCCTAATGGCCGATGTGATGAATGT
90492879 GAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGT
1 GAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGT
90492944 GATAAGGCCTAATGGCCGATGTGATGAATGT
66 GATAAGGCCTAATGGCCGATGTGATGAATGT
90492975 GAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATAT
1 GAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATAT
90493040 GTGATAAGGCCTAATGGCCGATGTGATGAATGT
64 GTGATAAGGCCTAATGGCCGATGTGATGAATGT
90493073 GAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGT
1 GAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGT
90493136 GATAAGGCCTAATGGCCGATGTGATGAATGT
66 GATAAGGCCTAATGGCCGATGTGATGAATGT
* * * * * * *
90493167 GAAAGTG--TATATATGTGACAGGGCCGAGTGGCCAATGTGATGGATGTGAAAGTGTATAAATGT
1 GAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGT
90493230 GATAAG
66 GATAAG
90493236 TCCCGAAGGG
Statistics
Matches: 536, Mismatches: 7, Indels: 12
0.97 0.01 0.02
Matches are distributed among these distances:
94 102 0.19
95 65 0.12
96 276 0.51
97 30 0.06
98 63 0.12
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.30
Consensus pattern (96 bp):
GAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGT
GATAAGGCCTAATGGCCGATGTGATGAATGT
Found at i:90493404 original size:37 final size:37
Alignment explanation
Indices: 90493354--90493432 Score: 117
Period size: 37 Copynumber: 2.1 Consensus size: 37
90493344 CCGAGCTCTA
*
90493354 AAGACCCGATAACTAT-GTGTGG-GAATTTTGTCCGGGT
1 AAGACCCGATAACT-TCGTGTGGAG-ATTATGTCCGGGT
90493391 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
90493428 AAGAC
1 AAGAC
90493433 TTCGTAATAA
Statistics
Matches: 39, Mismatches: 1, Indels: 4
0.89 0.02 0.09
Matches are distributed among these distances:
36 1 0.03
37 37 0.95
38 1 0.03
ACGTcount: A:0.27, C:0.18, G:0.29, T:0.27
Consensus pattern (37 bp):
AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
Found at i:90494682 original size:24 final size:25
Alignment explanation
Indices: 90494655--90494731 Score: 59
Period size: 25 Copynumber: 3.1 Consensus size: 25
90494645 GTACATGTAT
* *
90494655 GCTCATATAAGC-ATGTAAATGGAA
1 GCTCATATAAGCTATATAAAGGGAA
* * *
90494679 GCTCTTCTAAGCTATATAACGGGAA
1 GCTCATATAAGCTATATAAAGGGAA
* * *
90494704 GCTCATGTGAGCTA-AGTAACGGGAA
1 GCTCATATAAGCTATA-TAAAGGGAA
90494729 GCT
1 GCT
90494732 TCTACGAGCT
Statistics
Matches: 43, Mismatches: 8, Indels: 3
0.80 0.15 0.06
Matches are distributed among these distances:
24 11 0.26
25 32 0.74
ACGTcount: A:0.34, C:0.17, G:0.25, T:0.25
Consensus pattern (25 bp):
GCTCATATAAGCTATATAAAGGGAA
Found at i:90494706 original size:25 final size:25
Alignment explanation
Indices: 90494675--90494756 Score: 71
Period size: 25 Copynumber: 3.3 Consensus size: 25
90494665 GCATGTAAAT
90494675 GGAAGCTCTTCTAAGCTATATAACG
1 GGAAGCTCTTCTAAGCTATATAACG
* * *
90494700 GGAAGCTCATGTGAGCTA-AGTAACG
1 GGAAGCTCTTCTAAGCTATA-TAACG
* *
90494725 GGAAG--CTTCTACGAGCTATATATCA
1 GGAAGCTCTTCTA--AGCTATATAACG
90494750 GGAAGCT
1 GGAAGCT
90494757 TTTGTGAGCC
Statistics
Matches: 43, Mismatches: 8, Indels: 10
0.70 0.13 0.16
Matches are distributed among these distances:
23 3 0.07
24 1 0.02
25 38 0.88
26 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.26, T:0.24
Consensus pattern (25 bp):
GGAAGCTCTTCTAAGCTATATAACG
Found at i:90494765 original size:25 final size:25
Alignment explanation
Indices: 90494688--90494765 Score: 68
Period size: 25 Copynumber: 3.1 Consensus size: 25
90494678 AGCTCTTCTA
* *
90494688 AGCTATATAACGGGAAGCTCATGTG
1 AGCTATATAACAGGAAGCTTATGTG
* * **
90494713 AGCTA-AGTAACGGGAAGCTTCTACG
1 AGCTATA-TAACAGGAAGCTTATGTG
* *
90494738 AGCTATATATCAGGAAGCTTTTGTG
1 AGCTATATAACAGGAAGCTTATGTG
90494763 AGC
1 AGC
90494766 CAAATATCAA
Statistics
Matches: 42, Mismatches: 9, Indels: 4
0.76 0.16 0.07
Matches are distributed among these distances:
24 1 0.02
25 40 0.95
26 1 0.02
ACGTcount: A:0.31, C:0.17, G:0.27, T:0.26
Consensus pattern (25 bp):
AGCTATATAACAGGAAGCTTATGTG
Found at i:90494790 original size:25 final size:25
Alignment explanation
Indices: 90494744--90494793 Score: 64
Period size: 25 Copynumber: 2.0 Consensus size: 25
90494734 TACGAGCTAT
* ** *
90494744 ATATCAGGAAGCTTTTGTGAGCCAA
1 ATATCAAGAAGCTCATGAGAGCCAA
90494769 ATATCAAGAAGCTCATGAGAGCCAA
1 ATATCAAGAAGCTCATGAGAGCCAA
90494794 TGTAACAGCA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.38, C:0.18, G:0.22, T:0.22
Consensus pattern (25 bp):
ATATCAAGAAGCTCATGAGAGCCAA
Found at i:90504622 original size:13 final size:13
Alignment explanation
Indices: 90504604--90504628 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
90504594 ATTTTTAAAA
90504604 TTATTTTCTGTGT
1 TTATTTTCTGTGT
90504617 TTATTTTCTGTG
1 TTATTTTCTGTG
90504629 AATTTATACC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.08, C:0.08, G:0.16, T:0.68
Consensus pattern (13 bp):
TTATTTTCTGTGT
Found at i:90507662 original size:10 final size:10
Alignment explanation
Indices: 90507647--90507678 Score: 57
Period size: 10 Copynumber: 3.3 Consensus size: 10
90507637 TAAATACAAT
90507647 TAATTAAAGA
1 TAATTAAAGA
90507657 TAATTAAAGA
1 TAATTAAAGA
90507667 TAATTAAA-A
1 TAATTAAAGA
90507676 TAA
1 TAA
90507679 AATCCTAAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
9 4 0.18
10 18 0.82
ACGTcount: A:0.62, C:0.00, G:0.06, T:0.31
Consensus pattern (10 bp):
TAATTAAAGA
Found at i:90509347 original size:37 final size:37
Alignment explanation
Indices: 90509297--90509448 Score: 225
Period size: 37 Copynumber: 4.1 Consensus size: 37
90509287 ACCTTTAGCT
* * *
90509297 CGGACGAAATCTCCACACGAAGTTATCGGGTCTTACC
1 CGGACAAAATCTCCACACGTAGTCATCGGGTCTTACC
90509334 CGGACAAAATCTCCACACGTAGTCATCGGGTCTTACC
1 CGGACAAAATCTCCACACGTAGTCATCGGGTCTTACC
*
90509371 C-GAGCAAAATCTCCACACGTAGTCATCTGGTCTTACC
1 CGGA-CAAAATCTCCACACGTAGTCATCGGGTCTTACC
* * *
90509408 CGGACATACTCTCCACACGTAGTCATCGGGTCTCACC
1 CGGACAAAATCTCCACACGTAGTCATCGGGTCTTACC
90509445 CGGA
1 CGGA
90509449 ATATATTTCC
Statistics
Matches: 105, Mismatches: 8, Indels: 4
0.90 0.07 0.03
Matches are distributed among these distances:
36 2 0.02
37 101 0.96
38 2 0.02
ACGTcount: A:0.26, C:0.33, G:0.20, T:0.22
Consensus pattern (37 bp):
CGGACAAAATCTCCACACGTAGTCATCGGGTCTTACC
Found at i:90509663 original size:47 final size:47
Alignment explanation
Indices: 90509611--90510125 Score: 733
Period size: 47 Copynumber: 11.0 Consensus size: 47
90509601 TTTCACACTA
* * * * *
90509611 GCCATTCGGCTTTACCACATATATGCATGATCATATTCACCACATTG
1 GCCATTCGGCCTTATCACATATATGCATGCTCACATTCATCACATTG
*
90509658 GCCATTCGGCCTTATCACACATATGCATGCTCACATTCATCACATTG
1 GCCATTCGGCCTTATCACATATATGCATGCTCACATTCATCACATTG
* *
90509705 GCCATTCGGCCTTATCATATATATGCATGCTCACATTCATCACATTA
1 GCCATTCGGCCTTATCACATATATGCATGCTCACATTCATCACATTG
* * * *
90509752 GCCATTCGGCCTCATCACATATATACATGTTCACATTCATCACATAG
1 GCCATTCGGCCTTATCACATATATGCATGCTCACATTCATCACATTG
* * *
90509799 GCCATTCGGCCTTATCACATATATGCATGTTCATATTCACCACATTG
1 GCCATTCGGCCTTATCACATATATGCATGCTCACATTCATCACATTG
*
90509846 GCCATTCGGCCTTATCACACATATGCATGCTCACATTCATCACATTG
1 GCCATTCGGCCTTATCACATATATGCATGCTCACATTCATCACATTG
* * *
90509893 GCCATTCGGCCTTATCACATATATACATGCTCATATTCACCACATTG
1 GCCATTCGGCCTTATCACATATATGCATGCTCACATTCATCACATTG
** *
90509940 GCCATTCATCCTTATCACACATATGCATGCTCACATTCATCACATTG
1 GCCATTCGGCCTTATCACATATATGCATGCTCACATTCATCACATTG
* * * *
90509987 GCCATTCGGCCTTATCACATATATACATGTTCATATTCACCACATTG
1 GCCATTCGGCCTTATCACATATATGCATGCTCACATTCATCACATTG
* *
90510034 GCCATTCAGCCTTATCACACATATGCATGCTCACATTCATCACATTG
1 GCCATTCGGCCTTATCACATATATGCATGCTCACATTCATCACATTG
* * ***
90510081 GCCATTCGGCCTCATCACATATATACACATTCACATTCATCACAT
1 GCCATTCGGCCTTATCACATATATGCATGCTCACATTCATCACAT
90510126 AAAATCCTAA
Statistics
Matches: 414, Mismatches: 54, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
47 414 1.00
ACGTcount: A:0.28, C:0.30, G:0.11, T:0.31
Consensus pattern (47 bp):
GCCATTCGGCCTTATCACATATATGCATGCTCACATTCATCACATTG
Found at i:90509727 original size:94 final size:94
Alignment explanation
Indices: 90509611--90510104 Score: 808
Period size: 94 Copynumber: 5.3 Consensus size: 94
90509601 TTTCACACTA
* * *
90509611 GCCATTCGGCTTTACCACATATATGCATGATCATATTCACCACATTGGCCATTCGGCCTTATCAC
1 GCCATTCGGCCTTATCACATATATGCATGCTCATATTCACCACATTGGCCATTCGGCCTTATCAC
90509676 ACATATGCATGCTCACATTCATCACATTG
66 ACATATGCATGCTCACATTCATCACATTG
* * * * *
90509705 GCCATTCGGCCTTATCATATATATGCATGCTCACATTCATCACATTAGCCATTCGGCCTCATCAC
1 GCCATTCGGCCTTATCACATATATGCATGCTCATATTCACCACATTGGCCATTCGGCCTTATCAC
* * * *
90509770 ATATATACATGTTCACATTCATCACATAG
66 ACATATGCATGCTCACATTCATCACATTG
*
90509799 GCCATTCGGCCTTATCACATATATGCATGTTCATATTCACCACATTGGCCATTCGGCCTTATCAC
1 GCCATTCGGCCTTATCACATATATGCATGCTCATATTCACCACATTGGCCATTCGGCCTTATCAC
90509864 ACATATGCATGCTCACATTCATCACATTG
66 ACATATGCATGCTCACATTCATCACATTG
* **
90509893 GCCATTCGGCCTTATCACATATATACATGCTCATATTCACCACATTGGCCATTCATCCTTATCAC
1 GCCATTCGGCCTTATCACATATATGCATGCTCATATTCACCACATTGGCCATTCGGCCTTATCAC
90509958 ACATATGCATGCTCACATTCATCACATTG
66 ACATATGCATGCTCACATTCATCACATTG
* * *
90509987 GCCATTCGGCCTTATCACATATATACATGTTCATATTCACCACATTGGCCATTCAGCCTTATCAC
1 GCCATTCGGCCTTATCACATATATGCATGCTCATATTCACCACATTGGCCATTCGGCCTTATCAC
90510052 ACATATGCATGCTCACATTCATCACATTG
66 ACATATGCATGCTCACATTCATCACATTG
*
90510081 GCCATTCGGCCTCATCACATATAT
1 GCCATTCGGCCTTATCACATATAT
90510105 ACACATTCAC
Statistics
Matches: 371, Mismatches: 29, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
94 371 1.00
ACGTcount: A:0.27, C:0.30, G:0.11, T:0.32
Consensus pattern (94 bp):
GCCATTCGGCCTTATCACATATATGCATGCTCATATTCACCACATTGGCCATTCGGCCTTATCAC
ACATATGCATGCTCACATTCATCACATTG
Found at i:90514370 original size:20 final size:20
Alignment explanation
Indices: 90514317--90514378 Score: 63
Period size: 20 Copynumber: 3.1 Consensus size: 20
90514307 GTGTAAAAAT
*
90514317 AGGCATGATTGTGCAAACAA
1 AGGCACGATTGTGCAAACAA
* * *
90514337 AGGAACCGA-AGTGCAAACAG
1 AGGCA-CGATTGTGCAAACAA
*
90514357 AGGCACGATTGTGCAATCAA
1 AGGCACGATTGTGCAAACAA
90514377 AG
1 AG
90514379 TTACCTAAGT
Statistics
Matches: 32, Mismatches: 8, Indels: 4
0.73 0.18 0.09
Matches are distributed among these distances:
19 3 0.09
20 27 0.84
21 2 0.06
ACGTcount: A:0.40, C:0.18, G:0.27, T:0.15
Consensus pattern (20 bp):
AGGCACGATTGTGCAAACAA
Found at i:90521468 original size:17 final size:18
Alignment explanation
Indices: 90521446--90521480 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
90521436 TCACATTGAA
90521446 GTGTTTT-AGTGAAAACC
1 GTGTTTTCAGTGAAAACC
*
90521463 GTGTTTTCATTGAAAACC
1 GTGTTTTCAGTGAAAACC
90521481 CTTCTTAAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 7 0.44
18 9 0.56
ACGTcount: A:0.29, C:0.14, G:0.20, T:0.37
Consensus pattern (18 bp):
GTGTTTTCAGTGAAAACC
Found at i:90522598 original size:29 final size:28
Alignment explanation
Indices: 90522541--90522671 Score: 167
Period size: 29 Copynumber: 4.6 Consensus size: 28
90522531 TACCTGTATC
* *
90522541 TGGCCCATTAAGCCC-AATCATATTCATA
1 TGGCCCATTAGGCCCAAATCATCTT-ATA
90522569 TGGCCCATTAGGCCCAAATCATCTATATA
1 TGGCCCATTAGGCCCAAATCATCT-TATA
90522598 TGGCCCATTAGGCCCAAATCATCTGTATA
1 TGGCCCATTAGGCCCAAATCATCT-TATA
90522627 TGGCCCATTAGGCCCAAATCA-CATTTATA
1 TGGCCCATTAGGCCCAAATCATC--TTATA
**
90522656 TGGCTTATTAGGCCCA
1 TGGCCCATTAGGCCCA
90522672 GTCACATTCA
Statistics
Matches: 94, Mismatches: 5, Indels: 7
0.89 0.05 0.07
Matches are distributed among these distances:
28 15 0.16
29 77 0.82
30 2 0.02
ACGTcount: A:0.29, C:0.27, G:0.15, T:0.28
Consensus pattern (28 bp):
TGGCCCATTAGGCCCAAATCATCTTATA
Found at i:90526123 original size:20 final size:18
Alignment explanation
Indices: 90526098--90526155 Score: 62
Period size: 20 Copynumber: 2.9 Consensus size: 18
90526088 ATCAACTTTA
90526098 AATCAAGTTGAAATGGTTTC
1 AATCAAGTT-AAAT-GTTTC
*
90526118 AATCAAGTTAGAATTTTTC
1 AATCAAGTTA-AATGTTTC
90526137 AATCAAAGTTAAATTGTTT
1 AATC-AAGTTAAA-TGTTT
90526156 TTAAAACAAG
Statistics
Matches: 33, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
19 11 0.33
20 22 0.67
ACGTcount: A:0.38, C:0.09, G:0.14, T:0.40
Consensus pattern (18 bp):
AATCAAGTTAAATGTTTC
Found at i:90526138 original size:19 final size:19
Alignment explanation
Indices: 90526114--90526151 Score: 60
Period size: 19 Copynumber: 2.0 Consensus size: 19
90526104 GTTGAAATGG
90526114 TTTCAATC-AAGTTAGAATT
1 TTTCAATCAAAGTTA-AATT
90526133 TTTCAATCAAAGTTAAATT
1 TTTCAATCAAAGTTAAATT
90526152 GTTTTTAAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 12 0.67
20 6 0.33
ACGTcount: A:0.39, C:0.11, G:0.08, T:0.42
Consensus pattern (19 bp):
TTTCAATCAAAGTTAAATT
Found at i:90528237 original size:27 final size:27
Alignment explanation
Indices: 90528207--90528381 Score: 172
Period size: 27 Copynumber: 6.4 Consensus size: 27
90528197 TTGAGTCCGT
* *
90528207 ACACTCAGTGCTATATAATCAACTCGC
1 ACACTTAGTGCTACATAATCAACTCGC
* *
90528234 ACACTTAGTGCTACGTAATCAAATCGC
1 ACACTTAGTGCTACATAATCAACTCGC
*
90528261 ACACTTAGTGCTACATAGTCAAACTCGC
1 ACACTTAGTGCTACATAATC-AACTCGC
** ** *
90528289 ACACTTAGTGCCGCATGGTCAATTCGC
1 ACACTTAGTGCTACATAATCAACTCGC
* **
90528316 ACACTTAGTGC-ATCATATTCATTTCGC
1 ACACTTAGTGCTA-CATAATCAACTCGC
* * * *
90528343 ACATTTAGTGCAACATAGTCAAATCGC
1 ACACTTAGTGCTACATAATCAACTCGC
90528370 ACACTTAGTGCT
1 ACACTTAGTGCT
90528382 GTACAATTTA
Statistics
Matches: 124, Mismatches: 21, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
27 100 0.81
28 24 0.19
ACGTcount: A:0.30, C:0.27, G:0.15, T:0.28
Consensus pattern (27 bp):
ACACTTAGTGCTACATAATCAACTCGC
Found at i:90528344 original size:82 final size:81
Alignment explanation
Indices: 90528225--90528380 Score: 224
Period size: 82 Copynumber: 1.9 Consensus size: 81
90528215 TGCTATATAA
* *
90528225 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
90528290 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * ** *
90528307 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACATTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
90528371 CACTTAGTGC
65 CACTTAGTGC
90528381 TGTACAATTT
Statistics
Matches: 66, Mismatches: 7, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
81 16 0.24
82 50 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.28
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:90529919 original size:23 final size:24
Alignment explanation
Indices: 90529888--90529934 Score: 62
Period size: 24 Copynumber: 2.0 Consensus size: 24
90529878 TCCTCCCTTA
90529888 TTTTATTCA-TCCTTTT-TTTTCT
1 TTTTATTCACTCCTTTTATTTTCT
*
90529910 TTTTAATTCACTTCTTTTATTTTCT
1 TTTT-ATTCACTCCTTTTATTTTCT
90529935 AATCTACTTA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
22 4 0.19
23 5 0.24
24 6 0.29
25 6 0.29
ACGTcount: A:0.13, C:0.17, G:0.00, T:0.70
Consensus pattern (24 bp):
TTTTATTCACTCCTTTTATTTTCT
Found at i:90538099 original size:173 final size:173
Alignment explanation
Indices: 90537803--90538150 Score: 633
Period size: 173 Copynumber: 2.0 Consensus size: 173
90537793 ATTATCTACT
*
90537803 ATTGCTGGACAGGTCTGAGAGCTTTATGTTGATTACAAAACCATCCAAATGGAGGACCAAGTCAA
1 ATTGCTAGACAGGTCTGAGAGCTTTATGTTGATTACAAAACCATCCAAATGGAGGACCAAGTCAA
90537868 CCCAAAATTCGGCTGCATATGGATGTTCATAAATCAAATTTTGGTTTAATTACACAAGGTCCTTA
66 CCCAAAATTCGGCTGCATATGGATGTTCATAAATCAAATTTTGGTTTAATTACACAAGGTCCTTA
*
90537933 AAGAGTTGAAGAAATCAGAGATTTACCCAGAGATTTGCAATTG
131 AAGAGTTGAAGAAATCAGAGATTTACCCAGAGATTTACAATTG
90537976 ATTGCTAGACAGGTCTGAGAGCTTTATGTTGATTACAAAACCATCCAAATGGAGGACCAAGTCAA
1 ATTGCTAGACAGGTCTGAGAGCTTTATGTTGATTACAAAACCATCCAAATGGAGGACCAAGTCAA
* * *
90538041 CCCAAAATTTGGCTGCATGTGGATGTTCATAAATCAAATTTTGGTTTAATTACACAAGGTCCTTG
66 CCCAAAATTCGGCTGCATATGGATGTTCATAAATCAAATTTTGGTTTAATTACACAAGGTCCTTA
**
90538106 AAGAGTTGAAGAAATCAGAGATTTACCTGGAGATTTACAATTG
131 AAGAGTTGAAGAAATCAGAGATTTACCCAGAGATTTACAATTG
90538149 AT
1 AT
90538151 CGAGTCCTGA
Statistics
Matches: 168, Mismatches: 7, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
173 168 1.00
ACGTcount: A:0.34, C:0.16, G:0.20, T:0.29
Consensus pattern (173 bp):
ATTGCTAGACAGGTCTGAGAGCTTTATGTTGATTACAAAACCATCCAAATGGAGGACCAAGTCAA
CCCAAAATTCGGCTGCATATGGATGTTCATAAATCAAATTTTGGTTTAATTACACAAGGTCCTTA
AAGAGTTGAAGAAATCAGAGATTTACCCAGAGATTTACAATTG
Found at i:90544380 original size:14 final size:16
Alignment explanation
Indices: 90544361--90544399 Score: 55
Period size: 14 Copynumber: 2.6 Consensus size: 16
90544351 AAGAAAATGA
*
90544361 TGATATATGACA-A-G
1 TGATATATGAAATAGG
90544375 TGATATATGAAATAGG
1 TGATATATGAAATAGG
90544391 TGATATATG
1 TGATATATG
90544400 TGATGTAAAT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
14 11 0.50
15 1 0.05
16 10 0.45
ACGTcount: A:0.41, C:0.03, G:0.23, T:0.33
Consensus pattern (16 bp):
TGATATATGAAATAGG
Found at i:90549473 original size:21 final size:21
Alignment explanation
Indices: 90549448--90549489 Score: 84
Period size: 21 Copynumber: 2.0 Consensus size: 21
90549438 AAAAAGTGAA
90549448 AGAGAGATTTGATTCAATTTT
1 AGAGAGATTTGATTCAATTTT
90549469 AGAGAGATTTGATTCAATTTT
1 AGAGAGATTTGATTCAATTTT
90549490 CAAGCATCAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.33, C:0.05, G:0.19, T:0.43
Consensus pattern (21 bp):
AGAGAGATTTGATTCAATTTT
Found at i:90552810 original size:173 final size:173
Alignment explanation
Indices: 90552514--90553034 Score: 936
Period size: 173 Copynumber: 3.0 Consensus size: 173
90552504 ATTATCTACT
* *
90552514 ATTGCTGGACAGGTCTGAAATCTTTATGTTGATTACAAAACCATCCAAATGGAGGACCAAGTCAA
1 ATTGCTAGACAGGTCTGAAAGCTTTATGTTGATTACAAAACCATCCAAATGGAGGACCAAGTCAA
*
90552579 CCCAAAATTC-AGCTGCATGTGGATGTTCATAAATCAAATTTTAGTTTAATTACACAAGGTCCTT
66 CCCAAAATTCGA-CTGCATGTGGATGTTCATAAATCAAATTTTGGTTTAATTACACAAGGTCCTT
*
90552643 GAAGAGTTGAAGAAATCGGAGATTTACCTGGAGATTTGCAATTG
130 GAAGAGTTGAAGAAATCGGAGATTTACCCGGAGATTTGCAATTG
90552687 ATTGCTAGACAGGTCTGAAAGCTTTATGTTGATTACAAAACCATCCAAATGGAGGACCAAGTCAA
1 ATTGCTAGACAGGTCTGAAAGCTTTATGTTGATTACAAAACCATCCAAATGGAGGACCAAGTCAA
90552752 CCCAAAATTCGACTGCATGTGGATGTTCATAAATCAAATTTTGGTTTAATTACACAAGGTCCTTG
66 CCCAAAATTCGACTGCATGTGGATGTTCATAAATCAAATTTTGGTTTAATTACACAAGGTCCTTG
*
90552817 AAGAGTTGAAGAAATCGGAGATTTACCCAGAGATTTGCAATTG
131 AAGAGTTGAAGAAATCGGAGATTTACCCGGAGATTTGCAATTG
*
90552860 ATTGCTAGACAGGTCTGAGAGCTTTATGTTGATTACAAAACCATCCAAATGGAGGACCAAGTCAA
1 ATTGCTAGACAGGTCTGAAAGCTTTATGTTGATTACAAAACCATCCAAATGGAGGACCAAGTCAA
* * *
90552925 CCCAAAATTCGGCTACATGTGGATATTCATAAATCAAATTTTGGTTTAATTACACAAGGTCCTTG
66 CCCAAAATTCGACTGCATGTGGATGTTCATAAATCAAATTTTGGTTTAATTACACAAGGTCCTTG
*
90552990 AAGAGTTGAAGAAATCGGAGATTTACCCGGAGATTTACAATTG
131 AAGAGTTGAAGAAATCGGAGATTTACCCGGAGATTTGCAATTG
90553033 AT
1 AT
90553035 CGAGTCTTGA
Statistics
Matches: 336, Mismatches: 11, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
173 335 1.00
174 1 0.00
ACGTcount: A:0.35, C:0.17, G:0.20, T:0.29
Consensus pattern (173 bp):
ATTGCTAGACAGGTCTGAAAGCTTTATGTTGATTACAAAACCATCCAAATGGAGGACCAAGTCAA
CCCAAAATTCGACTGCATGTGGATGTTCATAAATCAAATTTTGGTTTAATTACACAAGGTCCTTG
AAGAGTTGAAGAAATCGGAGATTTACCCGGAGATTTGCAATTG
Found at i:90555759 original size:22 final size:21
Alignment explanation
Indices: 90555717--90555787 Score: 56
Period size: 22 Copynumber: 3.1 Consensus size: 21
90555707 TGTTTTAGTA
90555717 TTATTTTTATTTGTCTT-AATAT
1 TTATTTTTATTT-T-TTAAATAT
90555739 TTATTTTTATGTTTTTAAATATAT
1 TTATTTTTAT-TTTTT-AA-ATAT
90555763 TTGATTTATTATATTTTTAAA-AT
1 TT-ATTT-TTAT-TTTTTAAATAT
90555786 TT
1 TT
90555788 TTTATTTAAT
Statistics
Matches: 42, Mismatches: 1, Indels: 11
0.78 0.02 0.20
Matches are distributed among these distances:
21 2 0.05
22 11 0.26
23 7 0.17
24 7 0.17
25 6 0.14
26 9 0.21
ACGTcount: A:0.28, C:0.01, G:0.04, T:0.66
Consensus pattern (21 bp):
TTATTTTTATTTTTTAAATAT
Found at i:90555781 original size:26 final size:24
Alignment explanation
Indices: 90555735--90555783 Score: 71
Period size: 26 Copynumber: 2.0 Consensus size: 24
90555725 ATTTGTCTTA
*
90555735 ATATTTATTTTTATGTTTTTAAAT
1 ATATTTATTTTTATATTTTTAAAT
90555759 ATATTTGATTTATTATATTTTTAAA
1 ATATTT-ATTT-TTATATTTTTAAA
90555784 ATTTTTTATT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 6 0.27
25 4 0.18
26 12 0.55
ACGTcount: A:0.33, C:0.00, G:0.04, T:0.63
Consensus pattern (24 bp):
ATATTTATTTTTATATTTTTAAAT
Found at i:90555794 original size:25 final size:26
Alignment explanation
Indices: 90555738--90555795 Score: 75
Period size: 25 Copynumber: 2.3 Consensus size: 26
90555728 TGTCTTAATA
*
90555738 TTTATTT-TTATGTTTTTAAATATAT
1 TTTATTTATTATATTTTTAAATATAT
* *
90555763 TTGATTTATTATATTTTTAAA-ATTT
1 TTTATTTATTATATTTTTAAATATAT
90555788 TTTATTTA
1 TTTATTTA
90555796 ATGAAATAAG
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
25 16 0.57
26 12 0.43
ACGTcount: A:0.29, C:0.00, G:0.03, T:0.67
Consensus pattern (26 bp):
TTTATTTATTATATTTTTAAATATAT
Found at i:90556103 original size:8 final size:9
Alignment explanation
Indices: 90556081--90556116 Score: 56
Period size: 9 Copynumber: 4.0 Consensus size: 9
90556071 AATAAATATA
90556081 ATTTTTAATT
1 ATTTTT-ATT
90556091 -TTTTTATT
1 ATTTTTATT
90556099 ATTTTTATT
1 ATTTTTATT
90556108 ATTTTTATT
1 ATTTTTATT
90556117 GAAAATATAA
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
8 3 0.12
9 22 0.88
ACGTcount: A:0.22, C:0.00, G:0.00, T:0.78
Consensus pattern (9 bp):
ATTTTTATT
Found at i:90558580 original size:20 final size:20
Alignment explanation
Indices: 90558555--90558598 Score: 70
Period size: 20 Copynumber: 2.2 Consensus size: 20
90558545 CTTCCTTCTA
*
90558555 TTTTTTGAATTTTTTTATAT
1 TTTTTTGAATTTTTGTATAT
*
90558575 TTTTTTGTATTTTTGTATAT
1 TTTTTTGAATTTTTGTATAT
90558595 TTTT
1 TTTT
90558599 AATGTTTTTA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.16, C:0.00, G:0.07, T:0.77
Consensus pattern (20 bp):
TTTTTTGAATTTTTGTATAT
Found at i:90558595 original size:10 final size:10
Alignment explanation
Indices: 90558553--90558598 Score: 58
Period size: 10 Copynumber: 4.7 Consensus size: 10
90558543 TACTTCCTTC
*
90558553 TATTTTTTGA
1 TATTTTTTTA
90558563 -ATTTTTTTA
1 TATTTTTTTA
*
90558572 TATTTTTTTG
1 TATTTTTTTA
*
90558582 TATTTTTGTA
1 TATTTTTTTA
90558592 TATTTTT
1 TATTTTT
90558599 AATGTTTTTA
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
9 8 0.26
10 23 0.74
ACGTcount: A:0.17, C:0.00, G:0.07, T:0.76
Consensus pattern (10 bp):
TATTTTTTTA
Found at i:90558607 original size:20 final size:19
Alignment explanation
Indices: 90558564--90558612 Score: 55
Period size: 20 Copynumber: 2.5 Consensus size: 19
90558554 ATTTTTTGAA
*
90558564 TTTTTT-TATATTTTTTTG
1 TTTTTTGTATATTTTTATG
90558582 TATTTTTGTATATTTTTAATG
1 T-TTTTTGTATATTTTT-ATG
90558603 TTTTTATGTA
1 TTTTT-TGTA
90558613 ATATAGTCAA
Statistics
Matches: 26, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
18 1 0.04
19 5 0.19
20 13 0.50
21 7 0.27
ACGTcount: A:0.18, C:0.00, G:0.08, T:0.73
Consensus pattern (19 bp):
TTTTTTGTATATTTTTATG
Found at i:90559500 original size:29 final size:28
Alignment explanation
Indices: 90559465--90559523 Score: 82
Period size: 29 Copynumber: 2.1 Consensus size: 28
90559455 GGCCTTTGCT
90559465 CCCAATAATATTACTTCCAAGATTTGAAA
1 CCCAATAATATTACTTCCAAGATTT-AAA
* * *
90559494 CCCAATAATGTTACTTTCAATATTTAAA
1 CCCAATAATATTACTTCCAAGATTTAAA
90559522 CC
1 CC
90559524 TACATTCTCA
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
28 5 0.19
29 22 0.81
ACGTcount: A:0.39, C:0.22, G:0.05, T:0.34
Consensus pattern (28 bp):
CCCAATAATATTACTTCCAAGATTTAAA
Found at i:90559738 original size:14 final size:14
Alignment explanation
Indices: 90559696--90559739 Score: 52
Period size: 14 Copynumber: 3.1 Consensus size: 14
90559686 GAATTTAAAT
90559696 ATAAATATAATTACA
1 ATAAATATAATTA-A
* *
90559711 ATAAATACATTTAA
1 ATAAATATAATTAA
*
90559725 ATAACTATAATTAA
1 ATAAATATAATTAA
90559739 A
1 A
90559740 ATTAATTGTT
Statistics
Matches: 24, Mismatches: 5, Indels: 1
0.80 0.17 0.03
Matches are distributed among these distances:
14 13 0.54
15 11 0.46
ACGTcount: A:0.59, C:0.07, G:0.00, T:0.34
Consensus pattern (14 bp):
ATAAATATAATTAA
Found at i:90559780 original size:25 final size:26
Alignment explanation
Indices: 90559732--90559781 Score: 66
Period size: 25 Copynumber: 2.0 Consensus size: 26
90559722 TAAATAACTA
** *
90559732 TAATTAAAATTAATTGTTATAATATC
1 TAATTAAAATTAATAATTAAAATATC
90559758 TAATT-AAATTAATAATTAAAATAT
1 TAATTAAAATTAATAATTAAAATAT
90559782 ATTTAACCTC
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
25 16 0.76
26 5 0.24
ACGTcount: A:0.52, C:0.02, G:0.02, T:0.44
Consensus pattern (26 bp):
TAATTAAAATTAATAATTAAAATATC
Found at i:90560200 original size:21 final size:21
Alignment explanation
Indices: 90560176--90560215 Score: 64
Period size: 21 Copynumber: 1.9 Consensus size: 21
90560166 TTTGGATTTT
90560176 TTTTATATTTTT-AAATTTATA
1 TTTTAT-TTTTTGAAATTTATA
90560197 TTTTATTTTTTGAAATTTA
1 TTTTATTTTTTGAAATTTA
90560216 AAGAGTTATT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 5 0.28
21 13 0.72
ACGTcount: A:0.30, C:0.00, G:0.03, T:0.68
Consensus pattern (21 bp):
TTTTATTTTTTGAAATTTATA
Found at i:90561081 original size:29 final size:29
Alignment explanation
Indices: 90561032--90561099 Score: 75
Period size: 29 Copynumber: 2.3 Consensus size: 29
90561022 AATAAATTTT
* * *
90561032 AAAAATTAAATTTTCATATTT-TAAATAA
1 AAAAATAAAATTTTAAAATTTATAAATAA
**
90561060 AAAACATAAAATTTTAAAATTTATATTTAA
1 AAAA-ATAAAATTTTAAAATTTATAAATAA
90561090 AAAAATAAAA
1 AAAAATAAAA
90561100 ATCATATTTT
Statistics
Matches: 33, Mismatches: 5, Indels: 3
0.80 0.12 0.07
Matches are distributed among these distances:
28 4 0.12
29 20 0.61
30 9 0.27
ACGTcount: A:0.60, C:0.03, G:0.00, T:0.37
Consensus pattern (29 bp):
AAAAATAAAATTTTAAAATTTATAAATAA
Found at i:90561098 original size:21 final size:21
Alignment explanation
Indices: 90561074--90561125 Score: 52
Period size: 21 Copynumber: 2.5 Consensus size: 21
90561064 CATAAAATTT
90561074 TAAAATTTATATTTAAAAAAA
1 TAAAATTTATATTTAAAAAAA
* * ***
90561095 TAAAAATCATATTTTTTAAAA
1 TAAAATTTATATTTAAAAAAA
90561116 T-AAATTTATA
1 TAAAATTTATA
90561126 AAAAATAAAC
Statistics
Matches: 24, Mismatches: 7, Indels: 1
0.75 0.22 0.03
Matches are distributed among these distances:
20 7 0.29
21 17 0.71
ACGTcount: A:0.56, C:0.02, G:0.00, T:0.42
Consensus pattern (21 bp):
TAAAATTTATATTTAAAAAAA
Found at i:90561100 original size:37 final size:36
Alignment explanation
Indices: 90561054--90561134 Score: 92
Period size: 38 Copynumber: 2.2 Consensus size: 36
90561044 TTCATATTTT
* *
90561054 AAATAAAAAACATAAAATTTTAAAATTTATATTTA-AAA
1 AAATAAAAATCAT-AAATTTTAAAA--TAAATTTATAAA
**
90561092 AAATAAAAATCATATTTTTTAAAATAAATTTATAAA
1 AAATAAAAATCATAAATTTTAAAATAAATTTATAAA
90561128 AAATAAA
1 AAATAAA
90561135 CTCTTTAAAA
Statistics
Matches: 38, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
35 7 0.18
36 10 0.26
37 9 0.24
38 12 0.32
ACGTcount: A:0.63, C:0.02, G:0.00, T:0.35
Consensus pattern (36 bp):
AAATAAAAATCATAAATTTTAAAATAAATTTATAAA
Done.