Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A06
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 115140250
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2234201 characters in sequence are not A, C, G, or T
File 266 of 345
Found at i:90561119 original size:29 final size:27
Alignment explanation
Indices: 90561087--90561184 Score: 70
Period size: 30 Copynumber: 3.3 Consensus size: 27
90561077 AATTTATATT
90561087 TAAAAAAATAAAAATCATATTTTTTAAAA
1 TAAAAAAATAAAAAT-A-ATTTTTTAAAA
*** * *
90561116 TAAATTTATAAAAAATAAACTCTTTAAAA
1 TAAAAAAAT-AAAAAT-AATTTTTTAAAA
*
90561145 TTAAAAAATATAAAAATTAATTTTTAAAATA
1 -TAAAAAA-ATAAAAA-TAATTTTTTAAA-A
90561176 TAAAAAAAT
1 TAAAAAAAT
90561185 TCTAAAATTC
Statistics
Matches: 52, Mismatches: 12, Indels: 10
0.70 0.16 0.14
Matches are distributed among these distances:
29 17 0.33
30 31 0.60
31 4 0.08
ACGTcount: A:0.62, C:0.03, G:0.00, T:0.35
Consensus pattern (27 bp):
TAAAAAAATAAAAATAATTTTTTAAAA
Found at i:90561160 original size:30 final size:30
Alignment explanation
Indices: 90561126--90561182 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
90561116 TAAATTTATA
90561126 AAAAATAAACTCTTTAAAAT-TAAAAAATAT
1 AAAAATAAA-TCTTTAAAATATAAAAAATAT
* *
90561156 AAAAATTAATTTTTAAAATATAAAAAA
1 AAAAATAAATCTTTAAAATATAAAAAA
90561183 ATTCTAAAAT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
29 9 0.38
30 15 0.62
ACGTcount: A:0.65, C:0.04, G:0.00, T:0.32
Consensus pattern (30 bp):
AAAAATAAATCTTTAAAATATAAAAAATAT
Found at i:90570322 original size:27 final size:29
Alignment explanation
Indices: 90570295--90570351 Score: 71
Period size: 30 Copynumber: 2.0 Consensus size: 29
90570285 TTGTAAATAG
* *
90570295 AAACTA-ATCTCAGTTACTGATTCTTAGA
1 AAACTAGATATCAATTACTGATTCTTAGA
*
90570323 AAATTAGGATATCAATTACTGATTCTTAG
1 AAACTA-GATATCAATTACTGATTCTTAG
90570352 GGATTAGGAT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
28 5 0.21
30 19 0.79
ACGTcount: A:0.37, C:0.14, G:0.12, T:0.37
Consensus pattern (29 bp):
AAACTAGATATCAATTACTGATTCTTAGA
Found at i:90572039 original size:136 final size:136
Alignment explanation
Indices: 90571795--90572066 Score: 535
Period size: 136 Copynumber: 2.0 Consensus size: 136
90571785 CGGACCACAT
90571795 GGATCTGCACTATGACAGCACTAAGGCTTTTCTTGGTATGAAGGATGGAAAGGAGTTAGAATGCA
1 GGATCTGCACTATGACAGCACTAAGGCTTTTCTTGGTATGAAGGATGGAAAGGAGTTAGAATGCA
90571860 AAATTTGATAATCAAATGGTTAAGATTCATAACCACTTTCTTACTTTGTAGCTTAAGCATTAGAT
66 AAATTTGATAATCAAATGGTTAAGATTCATAACCACTTTCTTACTTTGTAGCTTAAGCATTAGAT
90571925 TAACAA
131 TAACAA
90571931 GGATCTGCACTATGACAGCACTAAGGCTTTTCTTGGTATGAAGGATGGAAAGGAGTTAGAATGCA
1 GGATCTGCACTATGACAGCACTAAGGCTTTTCTTGGTATGAAGGATGGAAAGGAGTTAGAATGCA
*
90571996 AAATTTGTTAATCAAATGGTTAAGATTCATAACCACTTTCTTACTTTGTAGCTTAAGCATTAGAT
66 AAATTTGATAATCAAATGGTTAAGATTCATAACCACTTTCTTACTTTGTAGCTTAAGCATTAGAT
90572061 TAACAA
131 TAACAA
90572067 ATTTTCCATT
Statistics
Matches: 135, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
136 135 1.00
ACGTcount: A:0.34, C:0.14, G:0.20, T:0.32
Consensus pattern (136 bp):
GGATCTGCACTATGACAGCACTAAGGCTTTTCTTGGTATGAAGGATGGAAAGGAGTTAGAATGCA
AAATTTGATAATCAAATGGTTAAGATTCATAACCACTTTCTTACTTTGTAGCTTAAGCATTAGAT
TAACAA
Found at i:90575940 original size:9 final size:9
Alignment explanation
Indices: 90575918--90576009 Score: 55
Period size: 9 Copynumber: 9.9 Consensus size: 9
90575908 TTTTGAAAAA
*
90575918 TTAAAAACTC
1 TTAAAAA-TT
90575928 TTAAAAATT
1 TTAAAAATT
90575937 TTAAAAA--
1 TTAAAAATT
*
90575944 ATAAAAATCAT
1 TTAAAAAT--T
90575955 TCTAAATAA-T
1 T-TAAA-AATT
*
90575965 TTAAAAATA
1 TTAAAAATT
*
90575974 TGAAAAATT
1 TTAAAAATT
*
90575983 TTAAGAATT
1 TTAAAAATT
*
90575992 TCAAAAAATT
1 T-TAAAAATT
90576002 TTAAAAAT
1 TTAAAAAT
90576010 GTGTTATTTA
Statistics
Matches: 63, Mismatches: 11, Indels: 17
0.69 0.12 0.19
Matches are distributed among these distances:
7 6 0.10
8 2 0.03
9 33 0.52
10 16 0.25
12 4 0.06
13 2 0.03
ACGTcount: A:0.58, C:0.05, G:0.02, T:0.35
Consensus pattern (9 bp):
TTAAAAATT
Found at i:90580990 original size:78 final size:79
Alignment explanation
Indices: 90580851--90581061 Score: 243
Period size: 78 Copynumber: 2.7 Consensus size: 79
90580841 TATTCGAATG
* * * **
90580851 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGC
1 ATATCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTATATCCGGGTTAAGATCCGAAGGC
90580916 ATTTGTGCGAGTTACT
64 ATTTGTGCGAGTTACT
* *
90580932 A-ATTCCGGGCTAAG-CCGAAGGCATTGGTGCGAGTTACTAAATCCGGGTTAAG-TCCCGAAGGC
1 ATA-TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGTTAAGAT-CCGAAGGC
90580994 ATTTGTGCGAGTTACT
64 ATTTGTGCGAGTTACT
* * *
90581010 ATAACCGGGCTATGTCCCGAAGGCATTTGAGCGAG-TAGCTATATCC-GGTTAA
1 ATATCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTA-CTATATCCGGGTTAA
90581062 ATTCTGAAGG
Statistics
Matches: 112, Mismatches: 12, Indels: 14
0.81 0.09 0.10
Matches are distributed among these distances:
77 1 0.01
78 51 0.46
79 23 0.21
80 25 0.22
81 12 0.11
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.27
Consensus pattern (79 bp):
ATATCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGTTAAGATCCGAAGGCAT
TTGTGCGAGTTACT
Found at i:90581052 original size:40 final size:40
Alignment explanation
Indices: 90580851--90581057 Score: 253
Period size: 40 Copynumber: 5.2 Consensus size: 40
90580841 TATTCGAATG
* * *
90580851 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACT
*
90580892 ATATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACT
1 ATATCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACT
*
90580932 A-ATTCCGGGCTAAG--CCGAAGGCATTGGTGCGAGTTACT
1 ATA-TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* *
90580970 AAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* * *
90581010 ATAACCGGGCTATGTCCCGAAGGCATTTGAGCGAG-TAGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CT
90581050 ATATCCGG
1 ATATCCGG
90581058 TTAAATTCTG
Statistics
Matches: 146, Mismatches: 14, Indels: 13
0.84 0.08 0.08
Matches are distributed among these distances:
38 34 0.23
39 4 0.03
40 79 0.54
41 28 0.19
42 1 0.01
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
Found at i:90589069 original size:41 final size:41
Alignment explanation
Indices: 90589008--90589130 Score: 118
Period size: 41 Copynumber: 3.1 Consensus size: 41
90588998 TATTCGAATG
*
90589008 ATATTCGGGCTAAG-TCCCGAAGGCTTTTGTGCTAAGTGACT
1 ATATTCGGACTAAGAT-CCGAAGGCTTTTGTGCTAAGTGACT
* * *
90589049 ATATTCGGACTAAGATCCGAAGGCATTTGTGC-GAGTTACT
1 ATATTCGGACTAAGATCCGAAGGCTTTTGTGCTAAGTGACT
* *
90589089 A-ATTCCGGA-T---ATTC-TAGGCTTTTGTGCTAAGTGACT
1 ATATT-CGGACTAAGATCCGAAGGCTTTTGTGCTAAGTGACT
90589125 ATATTC
1 ATATTC
90589131 CGAAGGCATT
Statistics
Matches: 69, Mismatches: 9, Indels: 13
0.76 0.10 0.14
Matches are distributed among these distances:
35 11 0.16
36 11 0.16
37 3 0.04
39 4 0.06
40 11 0.16
41 28 0.41
42 1 0.01
ACGTcount: A:0.24, C:0.18, G:0.24, T:0.34
Consensus pattern (41 bp):
ATATTCGGACTAAGATCCGAAGGCTTTTGTGCTAAGTGACT
Found at i:90589159 original size:76 final size:75
Alignment explanation
Indices: 90589028--90589172 Score: 202
Period size: 76 Copynumber: 1.9 Consensus size: 75
90589018 TAAGTCCCGA
* * *
90589028 AGGCTTTTGTGCTAAGTGACTATATTCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAATT
1 AGGCTTTTGTGCTAAGTGACTATATTCCGAC-AAGATCCGAAGGCATTGGTGCGAGTTACTAAAT
90589093 CCGGATATTCT
65 CCGGATATTCT
* **
90589104 AGGCTTTTGTGCTAAGTGACTATATTCCGA-AGGCATTTGAAGGCATTGGTGGCGAGTTACTAAA
1 AGGCTTTTGTGCTAAGTGACTATATTCCGACAAG-ATCCGAAGGCATTGGT-GCGAGTTACTAAA
90589168 TCCGG
64 TCCGG
90589173 TTAAGTCCGA
Statistics
Matches: 61, Mismatches: 6, Indels: 4
0.86 0.08 0.06
Matches are distributed among these distances:
74 2 0.03
75 13 0.21
76 46 0.75
ACGTcount: A:0.25, C:0.17, G:0.26, T:0.32
Consensus pattern (75 bp):
AGGCTTTTGTGCTAAGTGACTATATTCCGACAAGATCCGAAGGCATTGGTGCGAGTTACTAAATC
CGGATATTCT
Found at i:90589201 original size:38 final size:38
Alignment explanation
Indices: 90589142--90589263 Score: 106
Period size: 39 Copynumber: 3.1 Consensus size: 38
90589132 GAAGGCATTT
*
90589142 GAAGGCATTGGTGGCGAGTTACTAAATCCGGTTAAGTCC
1 GAAGGCATTTGT-GCGAGTTACTAAATCCGGTTAAGTCC
* *
90589181 GAAGGCATTTGTGCGAGTTACTATAA-CCGGGCTATGTCCC
1 GAAGGCATTTGTGCGAGTTACTA-AATCC-GGTTAAGT-CC
* * * *
90589221 GAAGG-AATTGAGCGAG-TAGCTATATCCGGTTAAATTCC
1 GAAGGCATTTGTGCGAGTTA-CTAAATCCGGTT-AAGTCC
90589259 GAAGG
1 GAAGG
90589264 TATGTGATTC
Statistics
Matches: 68, Mismatches: 9, Indels: 13
0.76 0.10 0.14
Matches are distributed among these distances:
38 26 0.38
39 35 0.51
40 7 0.10
ACGTcount: A:0.27, C:0.18, G:0.30, T:0.25
Consensus pattern (38 bp):
GAAGGCATTTGTGCGAGTTACTAAATCCGGTTAAGTCC
Found at i:90603508 original size:21 final size:21
Alignment explanation
Indices: 90603465--90603517 Score: 54
Period size: 21 Copynumber: 2.5 Consensus size: 21
90603455 CAGGCTGCAG
**
90603465 CACGGGCGTGTCCTATGGTCA
1 CACGGGCGTGTCCTATGACCA
90603486 CACGGGCGTGTCCCT-TGACCA
1 CACGGGCGTGT-CCTATGACCA
* *
90603507 CATGGGTGTGT
1 CACGGGCGTGT
90603518 GTACCCTACA
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
21 24 0.89
22 3 0.11
ACGTcount: A:0.13, C:0.28, G:0.34, T:0.25
Consensus pattern (21 bp):
CACGGGCGTGTCCTATGACCA
Found at i:90605648 original size:26 final size:27
Alignment explanation
Indices: 90605590--90605648 Score: 102
Period size: 27 Copynumber: 2.2 Consensus size: 27
90605580 TGATTTCAAG
*
90605590 ATCACAAGGCCAAAATATCTGAAACAA
1 ATCACAAGGCAAAAATATCTGAAACAA
90605617 ATCACAAGGCAAAAATATCTGAAACAA
1 ATCACAAGGCAAAAATATCTGAAACAA
90605644 A-CACA
1 ATCACA
90605649 TATCATTTAC
Statistics
Matches: 31, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
26 4 0.13
27 27 0.87
ACGTcount: A:0.54, C:0.22, G:0.10, T:0.14
Consensus pattern (27 bp):
ATCACAAGGCAAAAATATCTGAAACAA
Found at i:90607602 original size:20 final size:20
Alignment explanation
Indices: 90607577--90607615 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
90607567 CAAATTAATT
*
90607577 AATTAAATAACATTTTATTA
1 AATTAAATAACATTATATTA
90607597 AATTAAATAACATTATATT
1 AATTAAATAACATTATATT
90607616 TCACATAAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.51, C:0.05, G:0.00, T:0.44
Consensus pattern (20 bp):
AATTAAATAACATTATATTA
Found at i:90607663 original size:29 final size:29
Alignment explanation
Indices: 90607630--90607688 Score: 118
Period size: 29 Copynumber: 2.0 Consensus size: 29
90607620 ATAAAATGAG
90607630 AGTTAGATCCCACACCTTAAACAGATCTA
1 AGTTAGATCCCACACCTTAAACAGATCTA
90607659 AGTTAGATCCCACACCTTAAACAGATCTA
1 AGTTAGATCCCACACCTTAAACAGATCTA
90607688 A
1 A
90607689 ACCGTACGCT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 30 1.00
ACGTcount: A:0.39, C:0.27, G:0.10, T:0.24
Consensus pattern (29 bp):
AGTTAGATCCCACACCTTAAACAGATCTA
Found at i:90609160 original size:28 final size:28
Alignment explanation
Indices: 90609128--90609184 Score: 114
Period size: 28 Copynumber: 2.0 Consensus size: 28
90609118 ATATTTTAAG
90609128 TAAGTTTCTAAAATTTGGTATGTGATTA
1 TAAGTTTCTAAAATTTGGTATGTGATTA
90609156 TAAGTTTCTAAAATTTGGTATGTGATTA
1 TAAGTTTCTAAAATTTGGTATGTGATTA
90609184 T
1 T
90609185 GGAATTCATA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.32, C:0.04, G:0.18, T:0.47
Consensus pattern (28 bp):
TAAGTTTCTAAAATTTGGTATGTGATTA
Found at i:90610913 original size:20 final size:20
Alignment explanation
Indices: 90610884--90610930 Score: 76
Period size: 20 Copynumber: 2.4 Consensus size: 20
90610874 ATTTTAGTAA
* *
90610884 ACATGGTATGTATGCTATGC
1 ACATGATATGTATGATATGC
90610904 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
90610924 ACATGAT
1 ACATGAT
90610931 GTATTCATAA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.32, C:0.13, G:0.21, T:0.34
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:90611070 original size:24 final size:24
Alignment explanation
Indices: 90610980--90611096 Score: 152
Period size: 23 Copynumber: 5.0 Consensus size: 24
90610970 GAGGAAGTGC
* *
90610980 AAAAGGACTTATGCCCCAATTATT
1 AAAAGGGCTTATGCCCCAGTTATT
90611004 -AAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
90611027 -AAAGGGCTTAT-CCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
90611049 AAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
90611073 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
90611097 ACGAAAGCAG
Statistics
Matches: 84, Mismatches: 5, Indels: 7
0.88 0.05 0.07
Matches are distributed among these distances:
22 11 0.13
23 42 0.50
24 20 0.24
25 11 0.13
ACGTcount: A:0.30, C:0.21, G:0.20, T:0.29
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATT
Found at i:90618878 original size:24 final size:26
Alignment explanation
Indices: 90618836--90618883 Score: 73
Period size: 25 Copynumber: 1.9 Consensus size: 26
90618826 TTATAATATG
*
90618836 AAAATGACCATTTTGA-CCCTAAGTA
1 AAAATGACCATTATGACCCCTAAGTA
90618861 AAAATGACCATTAT-ACCCCTAAG
1 AAAATGACCATTATGACCCCTAAG
90618884 GTTTAAATGT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 1 0.05
25 20 0.95
ACGTcount: A:0.42, C:0.23, G:0.10, T:0.25
Consensus pattern (26 bp):
AAAATGACCATTATGACCCCTAAGTA
Found at i:90618987 original size:20 final size:20
Alignment explanation
Indices: 90618921--90618987 Score: 107
Period size: 20 Copynumber: 3.4 Consensus size: 20
90618911 ATTTTAGTAA
*
90618921 ACATGGTATGTATGATATGC
1 ACATGATATGTATGATATGC
* *
90618941 ACATGACATGTATGCTATGC
1 ACATGATATGTATGATATGC
90618961 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
90618981 ACATGAT
1 ACATGAT
90618988 GTATTCATAA
Statistics
Matches: 42, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 42 1.00
ACGTcount: A:0.33, C:0.13, G:0.21, T:0.33
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:90619068 original size:23 final size:23
Alignment explanation
Indices: 90619038--90619111 Score: 121
Period size: 23 Copynumber: 3.1 Consensus size: 23
90619028 AGGAAGTGCA
90619038 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
90619061 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
*
90619084 AAAAGGGCTTTTTGCCCCAGTTATT
1 -AAAGGGC-TTATGCCCCAGTTATT
90619109 AAA
1 AAA
90619112 AGAGGCTAGG
Statistics
Matches: 48, Mismatches: 1, Indels: 3
0.92 0.02 0.06
Matches are distributed among these distances:
23 23 0.48
24 10 0.21
25 15 0.31
ACGTcount: A:0.28, C:0.20, G:0.20, T:0.31
Consensus pattern (23 bp):
AAAGGGCTTATGCCCCAGTTATT
Found at i:90619105 original size:25 final size:24
Alignment explanation
Indices: 90619037--90619132 Score: 133
Period size: 25 Copynumber: 4.0 Consensus size: 24
90619027 GAGGAAGTGC
90619037 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
90619061 -AAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
90619084 AAAAGGGCTTTTTGCCCCAGTTATT
1 AAAAGGGC-TTATGCCCCAGTTATT
*
90619109 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
90619133 ACGAAAGTAG
Statistics
Matches: 65, Mismatches: 3, Indels: 7
0.87 0.04 0.09
Matches are distributed among these distances:
23 23 0.35
24 11 0.17
25 28 0.43
26 3 0.05
ACGTcount: A:0.28, C:0.21, G:0.22, T:0.29
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATT
Found at i:90619357 original size:31 final size:31
Alignment explanation
Indices: 90619322--90619381 Score: 102
Period size: 31 Copynumber: 1.9 Consensus size: 31
90619312 CGTTTACAGT
90619322 AAAGGCTTCGGCCCAGTAATATGAAATATAA
1 AAAGGCTTCGGCCCAGTAATATGAAATATAA
**
90619353 AAAGGCTTCGGCCCAGTGTTATGAAATAT
1 AAAGGCTTCGGCCCAGTAATATGAAATAT
90619382 GAAATATGAA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
31 27 1.00
ACGTcount: A:0.37, C:0.17, G:0.22, T:0.25
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATAA
Found at i:90627007 original size:16 final size:16
Alignment explanation
Indices: 90626986--90627019 Score: 68
Period size: 16 Copynumber: 2.1 Consensus size: 16
90626976 GCCGATGCCA
90626986 TATCCCAGACAGATCT
1 TATCCCAGACAGATCT
90627002 TATCCCAGACAGATCT
1 TATCCCAGACAGATCT
90627018 TA
1 TA
90627020 CACTGGCTGT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.32, C:0.29, G:0.12, T:0.26
Consensus pattern (16 bp):
TATCCCAGACAGATCT
Found at i:90627201 original size:46 final size:46
Alignment explanation
Indices: 90627093--90627259 Score: 169
Period size: 46 Copynumber: 3.6 Consensus size: 46
90627083 AAGCTGGCGC
* * * * **
90627093 CATGTCCCAGACAGGTCTTACACTAGCTTGTATATCGCGA-GGCCGATG
1 CATGTCCCAGACATGTCTTACACTAGC-TCT-CAT-GCTATGGCTAATG
* *
90627141 TATGTCCCAGACATGTCTTACACTAGCTCTCGT-CTCAAT-GCTAATG
1 CATGTCCCAGACATGTCTTACACTAGCTCTCATGCT--ATGGCTAATG
* * *
90627187 CATGTCCCAGACATGTCTTACACTGGCTCTCATGCTGTGGCTGATG
1 CATGTCCCAGACATGTCTTACACTAGCTCTCATGCTATGGCTAATG
90627233 CATGTCCCAGACATGTCTTACACTAGC
1 CATGTCCCAGACATGTCTTACACTAGC
90627260 ACACATATCA
Statistics
Matches: 100, Mismatches: 14, Indels: 12
0.79 0.11 0.10
Matches are distributed among these distances:
44 1 0.01
45 1 0.01
46 69 0.69
47 4 0.04
48 25 0.25
ACGTcount: A:0.22, C:0.29, G:0.20, T:0.29
Consensus pattern (46 bp):
CATGTCCCAGACATGTCTTACACTAGCTCTCATGCTATGGCTAATG
Found at i:90632605 original size:13 final size:13
Alignment explanation
Indices: 90632587--90632613 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
90632577 GCTCGGCAGG
90632587 GACACGCTCGTGT
1 GACACGCTCGTGT
90632600 GACACGCTCGTGT
1 GACACGCTCGTGT
90632613 G
1 G
90632614 CGATTACTCT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.15, C:0.30, G:0.33, T:0.22
Consensus pattern (13 bp):
GACACGCTCGTGT
Found at i:90644432 original size:46 final size:46
Alignment explanation
Indices: 90644374--90644498 Score: 216
Period size: 46 Copynumber: 2.7 Consensus size: 46
90644364 TAGGCATCCG
90644374 AGCTCGTTGAGTTGAGT-TCGAGTTCACTTATGGATGCAAACGCCCA
1 AGCTCGTTGAGTTGAGTCT-GAGTTCACTTATGGATGCAAACGCCCA
*
90644420 AGCTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACGCCCA
1 AGCTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCAAACGCCCA
*
90644466 AGCTCATTGAGTTGAGTCTGAGTTCACTTATGG
1 AGCTCGTTGAGTTGAGTCTGAGTTCACTTATGG
90644499 GCGGGTTACA
Statistics
Matches: 76, Mismatches: 2, Indels: 2
0.95 0.03 0.03
Matches are distributed among these distances:
46 75 0.99
47 1 0.01
ACGTcount: A:0.22, C:0.20, G:0.27, T:0.30
Consensus pattern (46 bp):
AGCTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCAAACGCCCA
Found at i:90647875 original size:24 final size:24
Alignment explanation
Indices: 90647847--90647929 Score: 148
Period size: 24 Copynumber: 3.5 Consensus size: 24
90647837 TGGAAGGGCA
90647847 ACACGCCCGTGTGCCTATTATGAC
1 ACACGCCCGTGTGCCTATTATGAC
**
90647871 ACACGCCCGTGTAACTATTATGAC
1 ACACGCCCGTGTGCCTATTATGAC
90647895 ACACGCCCGTGTGCCTATTATGAC
1 ACACGCCCGTGTGCCTATTATGAC
90647919 ACACGCCCGTG
1 ACACGCCCGTG
90647930 GCCAGATACT
Statistics
Matches: 55, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
24 55 1.00
ACGTcount: A:0.23, C:0.34, G:0.20, T:0.23
Consensus pattern (24 bp):
ACACGCCCGTGTGCCTATTATGAC
Found at i:90655785 original size:15 final size:16
Alignment explanation
Indices: 90655754--90655796 Score: 70
Period size: 15 Copynumber: 2.7 Consensus size: 16
90655744 GTCATAACCA
90655754 ATAGTTTTCACAATTCT
1 ATAG-TTTCACAATTCT
90655771 ATAGTTTCA-AATTCT
1 ATAGTTTCACAATTCT
90655786 ATAGTTTCACA
1 ATAGTTTCACA
90655797 TCTAAACAAC
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
15 15 0.60
16 6 0.24
17 4 0.16
ACGTcount: A:0.33, C:0.16, G:0.07, T:0.44
Consensus pattern (16 bp):
ATAGTTTCACAATTCT
Found at i:90664813 original size:32 final size:32
Alignment explanation
Indices: 90664767--90664827 Score: 104
Period size: 32 Copynumber: 1.9 Consensus size: 32
90664757 TGTCAAATAG
* *
90664767 TTAGAGAACCAAAATTGGGGGTCTTTAAAGGT
1 TTAGAGAACAAAAATTGGGGGTCATTAAAGGT
90664799 TTAGAGAACAAAAATTGGGGGTCATTAAA
1 TTAGAGAACAAAAATTGGGGGTCATTAAA
90664828 TCACAAATAA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
32 27 1.00
ACGTcount: A:0.39, C:0.08, G:0.26, T:0.26
Consensus pattern (32 bp):
TTAGAGAACAAAAATTGGGGGTCATTAAAGGT
Found at i:90665914 original size:46 final size:45
Alignment explanation
Indices: 90665841--90665945 Score: 117
Period size: 46 Copynumber: 2.3 Consensus size: 45
90665831 CGAGAGCTAA
* *
90665841 TGTAAGACATGT-TTAGAACATTAATCGGCCT-CGAGATGTAAGCCAG
1 TGTAAGACATGTCTAAGAACATGAATCGG-CTACGAGATGT--GCCAG
* *
90665887 TGTAAGACATGTCTAAG-ACATGCATCGGCTACGAGATGTGTCAG
1 TGTAAGACATGTCTAAGAACATGAATCGGCTACGAGATGTGCCAG
90665931 TGTAAGACCATGTCT
1 TGTAAGA-CATGTCT
90665946 GGGACATGGC
Statistics
Matches: 52, Mismatches: 4, Indels: 7
0.83 0.06 0.11
Matches are distributed among these distances:
44 11 0.21
45 9 0.17
46 29 0.56
47 3 0.06
ACGTcount: A:0.30, C:0.18, G:0.25, T:0.27
Consensus pattern (45 bp):
TGTAAGACATGTCTAAGAACATGAATCGGCTACGAGATGTGCCAG
Found at i:90674748 original size:28 final size:28
Alignment explanation
Indices: 90674712--90674766 Score: 76
Period size: 29 Copynumber: 1.9 Consensus size: 28
90674702 CACGGGATGA
90674712 GACACGGGC-GTGTCAAGGCCGTGTGAGG
1 GACACGGGCGGTGTC-AGGCCGTGTGAGG
*
90674740 GACATGGGCGTGTGTCAGGCCGTGTGA
1 GACACGGGCG-GTGTCAGGCCGTGTGA
90674767 AAACCCCTGT
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
28 8 0.33
29 11 0.46
30 5 0.21
ACGTcount: A:0.16, C:0.20, G:0.45, T:0.18
Consensus pattern (28 bp):
GACACGGGCGGTGTCAGGCCGTGTGAGG
Found at i:90681379 original size:20 final size:20
Alignment explanation
Indices: 90681351--90681388 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
90681341 TATTTAAGGC
* *
90681351 AAAATTTTTCTAAGTTTTGT
1 AAAACTTTTCCAAGTTTTGT
90681371 AAAACTTTTCCAAGTTTT
1 AAAACTTTTCCAAGTTTT
90681389 CGGTTTAGCC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.32, C:0.11, G:0.08, T:0.50
Consensus pattern (20 bp):
AAAACTTTTCCAAGTTTTGT
Found at i:90689529 original size:30 final size:30
Alignment explanation
Indices: 90689473--90689532 Score: 120
Period size: 30 Copynumber: 2.0 Consensus size: 30
90689463 ATAAGCCATT
90689473 ATACATGTTCTTGACCAAAAATAAGAGAAA
1 ATACATGTTCTTGACCAAAAATAAGAGAAA
90689503 ATACATGTTCTTGACCAAAAATAAGAGAAA
1 ATACATGTTCTTGACCAAAAATAAGAGAAA
90689533 TGCTTTGGCT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.50, C:0.13, G:0.13, T:0.23
Consensus pattern (30 bp):
ATACATGTTCTTGACCAAAAATAAGAGAAA
Found at i:90694001 original size:23 final size:23
Alignment explanation
Indices: 90693967--90694010 Score: 63
Period size: 23 Copynumber: 1.9 Consensus size: 23
90693957 TAGATCAATT
*
90693967 TATTGTTGTATTTATTGATGACA
1 TATTGTTGTATTTAGTGATGACA
90693990 TATTGATT-TATTTAGTGATGA
1 TATTG-TTGTATTTAGTGATGA
90694011 ATCTGAACAT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
23 17 0.89
24 2 0.11
ACGTcount: A:0.27, C:0.02, G:0.18, T:0.52
Consensus pattern (23 bp):
TATTGTTGTATTTAGTGATGACA
Found at i:90697495 original size:41 final size:40
Alignment explanation
Indices: 90697414--90697495 Score: 92
Period size: 41 Copynumber: 2.0 Consensus size: 40
90697404 AATGGTATTT
* * *
90697414 GGCACTAAATGTGCGATTTGAATTAGCTTAGGCTACTTGA
1 GGCACTAAATGTGCGATTCGAAATAGCTTAGGCTAATTGA
* * * *
90697454 GGCACTGAGTGTGCGATATCGAAATAGCTTCGGTTAATTGA
1 GGCACTAAATGTGCGAT-TCGAAATAGCTTAGGCTAATTGA
90697495 G
1 G
90697496 ATGGCACTAA
Statistics
Matches: 34, Mismatches: 7, Indels: 1
0.81 0.17 0.02
Matches are distributed among these distances:
40 15 0.44
41 19 0.56
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (40 bp):
GGCACTAAATGTGCGATTCGAAATAGCTTAGGCTAATTGA
Found at i:90700089 original size:48 final size:48
Alignment explanation
Indices: 90700033--90700140 Score: 162
Period size: 48 Copynumber: 2.2 Consensus size: 48
90700023 TCCAGATAGT
** * *
90700033 TCTTACACTAGCTTGTATATCGTGAGGCCGATGCATGTCCCAGGCATG
1 TCTTACACTAGCTTAAATATCGTGAGGCCGACGCATGTCCCAGACATG
* *
90700081 TCTTACACTAGCTTAAATATCTTGTGGCCGACGCATGTCCCAGACATG
1 TCTTACACTAGCTTAAATATCGTGAGGCCGACGCATGTCCCAGACATG
90700129 TCTTACACTAGC
1 TCTTACACTAGC
90700141 ACACATATCA
Statistics
Matches: 54, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
48 54 1.00
ACGTcount: A:0.23, C:0.27, G:0.20, T:0.30
Consensus pattern (48 bp):
TCTTACACTAGCTTAAATATCGTGAGGCCGACGCATGTCCCAGACATG
Found at i:90706226 original size:48 final size:48
Alignment explanation
Indices: 90706160--90706328 Score: 159
Period size: 48 Copynumber: 3.6 Consensus size: 48
90706150 AAGTTGACGC
* **
90706160 CATGTCCCAGACAGGTCTTACACTAGCTTGTATATCGCAAGGCCGATG
1 CATGTCCCAGACATGTCTTACACTAGCTTAAATATCGCAAGGCCGATG
* * * *
90706208 CATGTCCCAGGCATGTCTTACACTGGCTTAAATATCTCGAGGCCGATG
1 CATGTCCCAGACATGTCTTACACTAGCTTAAATATCGCAAGGCCGATG
* * * ** *
90706256 CATGTCCTAAACATGTCTTACATTAGCTCTCATGCTAT--C-A--CTGATG
1 CATGTCCCAGACATGTCTTACACTAGCT-T-A-AATATCGCAAGGCCGATG
90706302 CATGTCCCAGACATGTCTTACACTAGC
1 CATGTCCCAGACATGTCTTACACTAGC
90706329 ACACATATCA
Statistics
Matches: 100, Mismatches: 18, Indels: 8
0.79 0.14 0.06
Matches are distributed among these distances:
46 29 0.29
48 65 0.65
49 2 0.02
50 1 0.01
51 3 0.03
ACGTcount: A:0.25, C:0.28, G:0.19, T:0.28
Consensus pattern (48 bp):
CATGTCCCAGACATGTCTTACACTAGCTTAAATATCGCAAGGCCGATG
Found at i:90708431 original size:26 final size:26
Alignment explanation
Indices: 90708385--90708434 Score: 73
Period size: 26 Copynumber: 1.9 Consensus size: 26
90708375 CTAATTGATA
* *
90708385 AAATGACTATTATGCCTCTATGTGGT
1 AAATGACTATTATACCCCTATGTGGT
*
90708411 AAATGACTATTTTACCCCTATGTG
1 AAATGACTATTATACCCCTATGTG
90708435 ATGTATGATT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.28, C:0.18, G:0.16, T:0.38
Consensus pattern (26 bp):
AAATGACTATTATACCCCTATGTGGT
Found at i:90723300 original size:26 final size:27
Alignment explanation
Indices: 90723267--90723323 Score: 107
Period size: 26 Copynumber: 2.1 Consensus size: 27
90723257 GGAGAGAAAA
90723267 ATTTGGCAGCAACTTATGGAG-AGATG
1 ATTTGGCAGCAACTTATGGAGAAGATG
90723293 ATTTGGCAGCAACTTATGGAGAAGATG
1 ATTTGGCAGCAACTTATGGAGAAGATG
90723320 ATTT
1 ATTT
90723324 TTTTGTTATT
Statistics
Matches: 30, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
26 21 0.70
27 9 0.30
ACGTcount: A:0.32, C:0.11, G:0.28, T:0.30
Consensus pattern (27 bp):
ATTTGGCAGCAACTTATGGAGAAGATG
Found at i:90733503 original size:26 final size:26
Alignment explanation
Indices: 90733467--90733518 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
90733457 GCTTGGGTAA
90733467 GATAGAAAGTGCATCTATTTCATTAT
1 GATAGAAAGTGCATCTATTTCATTAT
*
90733493 GATAGAAAGTGCATCTGTTTCATTAT
1 GATAGAAAGTGCATCTATTTCATTAT
90733519 ACGAGCCTAG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.33, C:0.12, G:0.17, T:0.38
Consensus pattern (26 bp):
GATAGAAAGTGCATCTATTTCATTAT
Found at i:90738474 original size:81 final size:81
Alignment explanation
Indices: 90738333--90738494 Score: 288
Period size: 81 Copynumber: 2.0 Consensus size: 81
90738323 ATTATGCATG
* *
90738333 CATGAAAATTCCAAAGTAGATAAAAACGCAACCATAGTTCAAATAGCATTGTAGTCCAAAAACCA
1 CATGAAAATCCCAAAGTAGATAAAAACGCAACCATAGTTCAAATAGCATTATAGTCCAAAAACCA
90738398 AAGAAATTTAACTAAA
66 AAGAAATTTAACTAAA
*
90738414 CATGAAAATCCCAAAGTAGATAAAAACGCAACCATAGTTCAAATAGCATTATAGTTCAAAAACCA
1 CATGAAAATCCCAAAGTAGATAAAAACGCAACCATAGTTCAAATAGCATTATAGTCCAAAAACCA
*
90738479 AAGAAATTTAATTAAA
66 AAGAAATTTAACTAAA
90738495 ACTTAATAAA
Statistics
Matches: 77, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
81 77 1.00
ACGTcount: A:0.51, C:0.17, G:0.10, T:0.22
Consensus pattern (81 bp):
CATGAAAATCCCAAAGTAGATAAAAACGCAACCATAGTTCAAATAGCATTATAGTCCAAAAACCA
AAGAAATTTAACTAAA
Found at i:90742668 original size:81 final size:80
Alignment explanation
Indices: 90742556--90742848 Score: 310
Period size: 81 Copynumber: 3.6 Consensus size: 80
90742546 TGCCCTATAA
* * * *
90742556 GGGTATTTCAGA-AATTTTACACTAC-AAGGGTATTTTGGTAATTTTATACTACAAGGGTATTTT
1 GGGTATTTC-GATAATTTTACA-AACTAGGGGTATTTTGGTAATTTTACA-AACAAGGGTATTTT
90742619 GGTAATTTTACAAACTCG
63 GGTAATTTTACAAACTCG
* * *
90742637 GGGTATTTCGATAATTTTACAAACTAGGGGTATTTTAGTAATTTTACAAATTAAGGGTATTTAGG
1 GGGTATTTCGATAATTTTACAAACTAGGGGTATTTTGGTAATTTTACAAA-CAAGGGTATTTTGG
*
90742702 TAATTTTAC--ACTACAA
65 TAATTTTACAAACT-C-G
* * * * ** *
90742718 GGGTATTTC-AGTAATTTTATATACTAGAGGTATTTCGGTAATTTTACAAACTGGGGGTATTTTA
1 GGGTATTTCGA-TAATTTTACAAACTAGGGGTATTTTGGTAATTTTACAAAC-AAGGGTATTTTG
90742782 GTAATTTTACAAACT-G
64 GTAATTTTACAAACTCG
**
90742798 GGAGTATTTCGATAATTTTACAAACCGGGGGTATTTTGGTAATTTTACAAA
1 GG-GTATTTCGATAATTTTACAAACTAGGGGTATTTTGGTAATTTTACAAA
90742849 TTGGGGTCTA
Statistics
Matches: 176, Mismatches: 25, Indels: 22
0.79 0.11 0.10
Matches are distributed among these distances:
79 3 0.02
80 9 0.05
81 160 0.91
82 1 0.01
83 3 0.02
ACGTcount: A:0.32, C:0.10, G:0.19, T:0.40
Consensus pattern (80 bp):
GGGTATTTCGATAATTTTACAAACTAGGGGTATTTTGGTAATTTTACAAACAAGGGTATTTTGGT
AATTTTACAAACTCG
Found at i:90742854 original size:27 final size:27
Alignment explanation
Indices: 90742556--90742848 Score: 261
Period size: 27 Copynumber: 10.9 Consensus size: 27
90742546 TGCCCTATAA
* * * *
90742556 GGGTATTTCAGAAATTTTACACTAC-AA
1 GGGTATTTCGGTAATTTTACA-AACTAG
* * * *
90742583 GGGTATTTTGGTAATTTTATACTAC-AA
1 GGGTATTTCGGTAATTTTACA-AACTAG
* *
90742610 GGGTATTTTGGTAATTTTACAAACTCG
1 GGGTATTTCGGTAATTTTACAAACTAG
*
90742637 GGGTATTTCGATAATTTTACAAACTAG
1 GGGTATTTCGGTAATTTTACAAACTAG
** * *
90742664 GGGTATTTTAGTAATTTTACAAATTAA
1 GGGTATTTCGGTAATTTTACAAACTAG
* * *
90742691 GGGTATTTAGGTAATTTTACACTAC-AA
1 GGGTATTTCGGTAATTTTACA-AACTAG
* * *
90742718 GGGTATTTCAGTAATTTTATATACTAG
1 GGGTATTTCGGTAATTTTACAAACTAG
* *
90742745 AGGTATTTCGGTAATTTTACAAACTGG
1 GGGTATTTCGGTAATTTTACAAACTAG
**
90742772 GGGTATTTTAGTAATTTTACAAACT-G
1 GGGTATTTCGGTAATTTTACAAACTAG
* **
90742798 GGAGTATTTCGATAATTTTACAAACCGG
1 GG-GTATTTCGGTAATTTTACAAACTAG
*
90742826 GGGTATTTTGGTAATTTTACAAA
1 GGGTATTTCGGTAATTTTACAAA
90742849 TTGGGGTCTA
Statistics
Matches: 223, Mismatches: 38, Indels: 10
0.82 0.14 0.04
Matches are distributed among these distances:
26 8 0.04
27 211 0.95
28 4 0.02
ACGTcount: A:0.32, C:0.10, G:0.19, T:0.40
Consensus pattern (27 bp):
GGGTATTTCGGTAATTTTACAAACTAG
Found at i:90746613 original size:32 final size:32
Alignment explanation
Indices: 90746572--90746634 Score: 90
Period size: 32 Copynumber: 2.0 Consensus size: 32
90746562 CACGGCTTAT
*
90746572 AGCCATCAGTAACGGTAATTTGACCGACACAA
1 AGCCATCAGTAACGGTAATATGACCGACACAA
* * *
90746604 AGCCATCAGTACCTGTAATATGATCGACACA
1 AGCCATCAGTAACGGTAATATGACCGACACA
90746635 CAACCGTGAG
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
32 27 1.00
ACGTcount: A:0.37, C:0.25, G:0.17, T:0.21
Consensus pattern (32 bp):
AGCCATCAGTAACGGTAATATGACCGACACAA
Found at i:90746736 original size:22 final size:23
Alignment explanation
Indices: 90746699--90746745 Score: 78
Period size: 22 Copynumber: 2.1 Consensus size: 23
90746689 TAGCCACAGG
*
90746699 TAAATATGATTAGCACAAAGCCA
1 TAAATAAGATTAGCACAAAGCCA
90746722 TAAATAAGA-TAGCACAAAGCCA
1 TAAATAAGATTAGCACAAAGCCA
90746744 TA
1 TA
90746746 TTTAGGTTGG
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
22 15 0.65
23 8 0.35
ACGTcount: A:0.51, C:0.17, G:0.13, T:0.19
Consensus pattern (23 bp):
TAAATAAGATTAGCACAAAGCCA
Found at i:90747209 original size:27 final size:27
Alignment explanation
Indices: 90747135--90747215 Score: 108
Period size: 27 Copynumber: 3.0 Consensus size: 27
90747125 TCATTTTTTC
* *
90747135 CTACAGGGGTATTTCAGTAAATTTACA
1 CTACAAGGGTATTTCAGTAATTTTACA
* *
90747162 CTACAAGGGCATTTCAATAATTTTACA
1 CTACAAGGGTATTTCAGTAATTTTACA
**
90747189 CTACAAGGGTATTTTGGTAATTTTACA
1 CTACAAGGGTATTTCAGTAATTTTACA
90747216 AACTGGGGGT
Statistics
Matches: 46, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 46 1.00
ACGTcount: A:0.33, C:0.15, G:0.16, T:0.36
Consensus pattern (27 bp):
CTACAAGGGTATTTCAGTAATTTTACA
Found at i:90747225 original size:27 final size:28
Alignment explanation
Indices: 90747194--90747273 Score: 110
Period size: 27 Copynumber: 2.9 Consensus size: 28
90747184 TTACACTACA
*
90747194 AGGGTATTTTGGTAATTTTACAAACT-G
1 AGGGTATTTCGGTAATTTTACAAACTCG
* * *
90747221 GGGGTATTTCGATAATTTTCCAAA-TCG
1 AGGGTATTTCGGTAATTTTACAAACTCG
90747248 AGGGTATTTCGGTAATTTTACAAACT
1 AGGGTATTTCGGTAATTTTACAAACT
90747274 TGGGAAGCAT
Statistics
Matches: 44, Mismatches: 7, Indels: 3
0.81 0.13 0.06
Matches are distributed among these distances:
26 1 0.02
27 42 0.95
28 1 0.02
ACGTcount: A:0.29, C:0.11, G:0.21, T:0.39
Consensus pattern (28 bp):
AGGGTATTTCGGTAATTTTACAAACTCG
Found at i:90747426 original size:26 final size:27
Alignment explanation
Indices: 90747403--90747536 Score: 112
Period size: 27 Copynumber: 5.0 Consensus size: 27
90747393 TCATTTTTCC
*
90747403 CTACAAAGGTATTTCGGTAATTTTATA
1 CTACAAAGGTATTTCGGTAATTTTACA
* *
90747430 CTACAAGGGTATTTCGATAATTTTACA
1 CTACAAAGGTATTTCGGTAATTTTACA
* *
90747457 CTAGAGAGGTATTGT-GGTAATTTTACA
1 CTACAAAGGTATT-TCGGTAATTTTACA
** * *
90747484 CTACAGGGGTATTTTGGAAATTTATA-A
1 CTACAAAGGTATTTCGGTAATTT-TACA
** **
90747511 -TTTAGGGGTATTTCGGTAATTTTACA
1 CTACAAAGGTATTTCGGTAATTTTACA
90747537 AACTTGGGAT
Statistics
Matches: 89, Mismatches: 14, Indels: 9
0.79 0.12 0.08
Matches are distributed among these distances:
25 2 0.02
26 20 0.22
27 64 0.72
28 3 0.03
ACGTcount: A:0.31, C:0.10, G:0.20, T:0.40
Consensus pattern (27 bp):
CTACAAAGGTATTTCGGTAATTTTACA
Found at i:90747495 original size:268 final size:267
Alignment explanation
Indices: 90747010--90747545 Score: 821
Period size: 268 Copynumber: 2.0 Consensus size: 267
90747000 CATATATTAA
90747010 AAGCATATCAGTTTTACAACCAGAGTCAAGTCAGTTAAAACACAGTCATACAATCATAGTCAAAT
1 AAGCATATCAGTTTTACAACCAGAGTCAAGTCAGTTAAAACACAGTCATACAATCATAGTCAAAT
*
90747075 CAGTCAAATTCATAGTTTAAGCCGGTCATTTACCCATAAGGGCAAAACAGTCATTTTTTCCTACA
66 CAGTCAAATTCATAGTTTAAGCCGGTCATTTACCCATAAGGGCAAAACAGTCATTTTTCCCTACA
** *
90747140 GGGGTATTTCAGTAAATTTACACTACAAGGGCATTTCAATAATTTTACACTACAAGGGTATTTTG
131 AAGGTATTTCAGTAAATTTACACTACAAGGGCATTTCAATAATTTTACACTACAAGGGTATTGTG
*
90747205 GTAATTTTACAAACTGGGGGTA-TTTCGATAATTT-TCCAAATCGA-GGGTATTTCGGTAATTTT
196 GTAATTTTACAAACTAGGGGTATTTTCGA-AATTTAT---AATCGAGGGGTATTTCGGTAATTTT
90747267 ACAAACTTGGG
257 ACAAACTTGGG
*
90747278 AAGCATATCAGTTTTACAACCAGAGTTAAGTCAGTTAAAACACAGTCATACAATCATAGTCAAAT
1 AAGCATATCAGTTTTACAACCAGAGTCAAGTCAGTTAAAACACAGTCATACAATCATAGTCAAAT
* *
90747343 CAGTCAAATTCATAGTTTAAGCCGGTCATTTACCCATAAGGGCGAAATAGTCATTTTTCCCTACA
66 CAGTCAAATTCATAGTTTAAGCCGGTCATTTACCCATAAGGGCAAAACAGTCATTTTTCCCTACA
* * * * * *
90747408 AAGGTATTTCGGTAATTTTATACTACAAGGGTATTTCGATAATTTTACACTA-GAGAGGTATTGT
131 AAGGTATTTCAGTAAATTTACACTACAAGGGCATTTCAATAATTTTACACTACAAG-GGTATTGT
* * **
90747472 GGTAATTTTACACTAC-AGGGGTATTTTGGAAATTTATAATTTAGGGGTATTTCGGTAATTTTAC
195 GGTAATTTTACA-AACTAGGGGTATTTTCGAAATTTATAATCGAGGGGTATTTCGGTAATTTTAC
90747536 AAACTTGGG
259 AAACTTGGG
90747545 A
1 A
90747546 TATTTCGATA
Statistics
Matches: 245, Mismatches: 18, Indels: 11
0.89 0.07 0.04
Matches are distributed among these distances:
266 4 0.02
267 32 0.13
268 201 0.82
269 8 0.03
ACGTcount: A:0.34, C:0.16, G:0.17, T:0.33
Consensus pattern (267 bp):
AAGCATATCAGTTTTACAACCAGAGTCAAGTCAGTTAAAACACAGTCATACAATCATAGTCAAAT
CAGTCAAATTCATAGTTTAAGCCGGTCATTTACCCATAAGGGCAAAACAGTCATTTTTCCCTACA
AAGGTATTTCAGTAAATTTACACTACAAGGGCATTTCAATAATTTTACACTACAAGGGTATTGTG
GTAATTTTACAAACTAGGGGTATTTTCGAAATTTATAATCGAGGGGTATTTCGGTAATTTTACAA
ACTTGGG
Found at i:90747549 original size:27 final size:27
Alignment explanation
Indices: 90747519--90747592 Score: 87
Period size: 27 Copynumber: 2.7 Consensus size: 27
90747509 AATTTAGGGG
*
90747519 TATTTCGGTAATTTTACAAACTTGGG-A
1 TATTTCGGTAATTTTACAAAC-CGGGTA
* *
90747546 TATTTCGATAATTTTACAAACCGGGTG
1 TATTTCGGTAATTTTACAAACCGGGTA
**
90747573 TATTTTAGTAATTTTACAAA
1 TATTTCGGTAATTTTACAAA
90747593 TTGAGGTCTC
Statistics
Matches: 40, Mismatches: 6, Indels: 2
0.83 0.12 0.04
Matches are distributed among these distances:
26 3 0.08
27 37 0.93
ACGTcount: A:0.32, C:0.11, G:0.15, T:0.42
Consensus pattern (27 bp):
TATTTCGGTAATTTTACAAACCGGGTA
Found at i:90753818 original size:235 final size:235
Alignment explanation
Indices: 90753401--90753872 Score: 854
Period size: 235 Copynumber: 2.0 Consensus size: 235
90753391 TCGAAAACAC
90753401 TTTTGAAAAACTCCTTCAGAACAACATTCTCCCTAAAATTATGAATTTGATATACTCATGCTCAA
1 TTTTGAAAAACTCCTTCAGAACAACATTCTCCCTAAAATTATGAATTTGATATACTCATGCTCAA
* *
90753466 AAACAAGAAATATGATAGTTATGGTACTTATTATAATAGCAAATTTTAGACTAAATGCTTTTATA
66 AAACAAGAAATATGATAGTTATGCTACTTATTATAATAGAAAATTTTAGACTAAATGCTTTTATA
* *
90753531 ACAAAGACATGTTAACCCTTACCAATTTGATTTTTATTCCTTTATCCAAGACTAAGCTGCAATCA
131 ACAAAGACATGTTAACCCTTACAAATTTGATTTTTATTCCTTTATCCAAGACTAAGCGGCAATCA
* *
90753596 TTGAGCTTAATTTATGTCTTCATTTGTTGATCGTAGCAAT
196 TTGAGCTTAATTTATGTCTTCATATGTTGATCGTAGAAAT
*
90753636 TTTTGAAAAACTCCTTCAGAACAACGTTCTCCCTAAAATTATGAATTTGATATACTCATGCTCAA
1 TTTTGAAAAACTCCTTCAGAACAACATTCTCCCTAAAATTATGAATTTGATATACTCATGCTCAA
* *
90753701 AAACAAGAAATATGATAGTTATGCTACTTATTATAATAGAAAATTTTAGACTAAATTCTTTTGTA
66 AAACAAGAAATATGATAGTTATGCTACTTATTATAATAGAAAATTTTAGACTAAATGCTTTTATA
*
90753766 ACAAAGACATGTTAACCCTTACAAATTTGATTTTTATTCCTTTATTCAAGACTAAGCGGCAATCA
131 ACAAAGACATGTTAACCCTTACAAATTTGATTTTTATTCCTTTATCCAAGACTAAGCGGCAATCA
90753831 TTGAGCTTAATTTATGTCTTCATATGTTGATCGTAGAAAT
196 TTGAGCTTAATTTATGTCTTCATATGTTGATCGTAGAAAT
90753871 TT
1 TT
90753873 CTCTCTACTA
Statistics
Matches: 227, Mismatches: 10, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
235 227 1.00
ACGTcount: A:0.36, C:0.16, G:0.11, T:0.37
Consensus pattern (235 bp):
TTTTGAAAAACTCCTTCAGAACAACATTCTCCCTAAAATTATGAATTTGATATACTCATGCTCAA
AAACAAGAAATATGATAGTTATGCTACTTATTATAATAGAAAATTTTAGACTAAATGCTTTTATA
ACAAAGACATGTTAACCCTTACAAATTTGATTTTTATTCCTTTATCCAAGACTAAGCGGCAATCA
TTGAGCTTAATTTATGTCTTCATATGTTGATCGTAGAAAT
Found at i:90762948 original size:15 final size:16
Alignment explanation
Indices: 90762918--90762951 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
90762908 ATAATCACAG
*
90762918 AAAATTTAAGTGAGGA
1 AAAATTTAAATGAGGA
90762934 AAAATTTAAAT-AGGA
1 AAAATTTAAATGAGGA
90762949 AAA
1 AAA
90762952 TAAACCAAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 7 0.41
16 10 0.59
ACGTcount: A:0.59, C:0.00, G:0.18, T:0.24
Consensus pattern (16 bp):
AAAATTTAAATGAGGA
Found at i:90766740 original size:27 final size:27
Alignment explanation
Indices: 90766710--90766825 Score: 97
Period size: 27 Copynumber: 4.3 Consensus size: 27
90766700 GCATAATTGA
* *
90766710 CATTTTACCATACAGGGGTATTACGGT
1 CATTTTACCATACAGGGGCATTACGAT
* **
90766737 CATTTTACCATATAGAAGCATTACGAT
1 CATTTTACCATACAGGGGCATTACGAT
* * * * * * *
90766764 CATTTAAGCTTATAGGGGGATTGCGTT
1 CATTTTACCATACAGGGGCATTACGAT
* *
90766791 CATTTTACCCTACAGGGGCATTTCGAT
1 CATTTTACCATACAGGGGCATTACGAT
*
90766818 AATTTTAC
1 CATTTTAC
90766826 AAATCGAGGT
Statistics
Matches: 68, Mismatches: 21, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
27 68 1.00
ACGTcount: A:0.28, C:0.18, G:0.19, T:0.35
Consensus pattern (27 bp):
CATTTTACCATACAGGGGCATTACGAT
Found at i:90770182 original size:33 final size:33
Alignment explanation
Indices: 90770145--90770240 Score: 95
Period size: 33 Copynumber: 2.9 Consensus size: 33
90770135 TTGCAGTAAC
* * * *
90770145 AGTCTGGGCC-TAGGCCTTATCCAGTATCAGTAT
1 AGTCTGGGCCTTA-GCCCTATACAGTAACAGAAT
* *
90770178 AGTCTAGGCCTTAGCCCTATACAGTAACTGAAT
1 AGTCTGGGCCTTAGCCCTATACAGTAACAGAAT
* * *
90770211 AGTCTGGGCTTTAGCCTTATATAGTAACAG
1 AGTCTGGGCCTTAGCCCTATACAGTAACAG
90770241 TATGAGCCTA
Statistics
Matches: 51, Mismatches: 11, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
33 49 0.96
34 2 0.04
ACGTcount: A:0.26, C:0.22, G:0.22, T:0.30
Consensus pattern (33 bp):
AGTCTGGGCCTTAGCCCTATACAGTAACAGAAT
Found at i:90770680 original size:27 final size:27
Alignment explanation
Indices: 90770649--90770763 Score: 151
Period size: 27 Copynumber: 4.3 Consensus size: 27
90770639 GCATAATCAA
* * *
90770649 CATTTTACCATATAGGGGTATTACGGT
1 CATTTTACCCTACAGGGGCATTACGGT
* * *
90770676 TATTTTACCTTATA-GGGCATTACGGT
1 CATTTTACCCTACAGGGGCATTACGGT
* *
90770702 CATTTTACCCCACAGGGGCATTACAGT
1 CATTTTACCCTACAGGGGCATTACGGT
90770729 CATTTTACCCTACAGGGGCATTACGGT
1 CATTTTACCCTACAGGGGCATTACGGT
90770756 CATTTTAC
1 CATTTTAC
90770764 AAATTAGGGT
Statistics
Matches: 77, Mismatches: 10, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
26 21 0.27
27 56 0.73
ACGTcount: A:0.24, C:0.22, G:0.19, T:0.35
Consensus pattern (27 bp):
CATTTTACCCTACAGGGGCATTACGGT
Found at i:90770763 original size:54 final size:53
Alignment explanation
Indices: 90770662--90770763 Score: 150
Period size: 53 Copynumber: 1.9 Consensus size: 53
90770652 TTTACCATAT
* * * * *
90770662 AGGGGTATTACGGTTATTTTACCTTATAGGGCATTACGGTCATTTTACCCCAC
1 AGGGGCATTACAGTCATTTTACCCTACAGGGCATTACGGTCATTTTACCCCAC
90770715 AGGGGCATTACAGTCATTTTACCCTACAGGGGCATTACGGTCATTTTAC
1 AGGGGCATTACAGTCATTTTACCCTACA-GGGCATTACGGTCATTTTAC
90770764 AAATTAGGGT
Statistics
Matches: 43, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
53 23 0.53
54 20 0.47
ACGTcount: A:0.24, C:0.22, G:0.22, T:0.33
Consensus pattern (53 bp):
AGGGGCATTACAGTCATTTTACCCTACAGGGCATTACGGTCATTTTACCCCAC
Found at i:90771808 original size:27 final size:27
Alignment explanation
Indices: 90771771--90771857 Score: 84
Period size: 27 Copynumber: 3.2 Consensus size: 27
90771761 AGCATAGCTG
* *
90771771 CCAGAAACAGTAAATGTGGTAAAGCCA
1 CCAGTAACAGTAAATGTGGCAAAGCCA
* * * *
90771798 CCAGTATCAGTAATTGTGGCATAGTCA
1 CCAGTAACAGTAAATGTGGCAAAGCCA
* * * *
90771825 CCAGTAACAGTGAATGTGACATAGTCA
1 CCAGTAACAGTAAATGTGGCAAAGCCA
90771852 CCAGTA
1 CCAGTA
90771858 TAGAACTTCC
Statistics
Matches: 50, Mismatches: 10, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
27 50 1.00
ACGTcount: A:0.37, C:0.20, G:0.22, T:0.22
Consensus pattern (27 bp):
CCAGTAACAGTAAATGTGGCAAAGCCA
Found at i:90772048 original size:27 final size:27
Alignment explanation
Indices: 90772000--90772114 Score: 151
Period size: 27 Copynumber: 4.3 Consensus size: 27
90771990 GCATAATTGA
* *
90772000 CATTTTACCAT-CAGGGGTATTACGAT
1 CATTTTACCCTACAGGGGCATTACGAT
* *
90772026 TATTTTACCCTACAGGGGCATTACGGT
1 CATTTTACCCTACAGGGGCATTACGAT
* *
90772053 CATTTTACCCTACATGGGCATTACAAT
1 CATTTTACCCTACAGGGGCATTACGAT
*
90772080 CATTTTACCCTACAGGGGCATTTCGAT
1 CATTTTACCCTACAGGGGCATTACGAT
*
90772107 AATTTTAC
1 CATTTTAC
90772115 AAATCGGGGT
Statistics
Matches: 76, Mismatches: 12, Indels: 1
0.85 0.13 0.01
Matches are distributed among these distances:
26 9 0.12
27 67 0.88
ACGTcount: A:0.26, C:0.23, G:0.17, T:0.35
Consensus pattern (27 bp):
CATTTTACCCTACAGGGGCATTACGAT
Found at i:90773164 original size:27 final size:27
Alignment explanation
Indices: 90773134--90773186 Score: 79
Period size: 27 Copynumber: 2.0 Consensus size: 27
90773124 CTGCTAGAAA
*
90773134 CAGTAAATGTGGCAAAGCCATCAGTAT
1 CAGTAAATGTGGCAAAGCCACCAGTAT
* *
90773161 CAGTAATTGTGGCATAGCCACCAGTA
1 CAGTAAATGTGGCAAAGCCACCAGTA
90773187 CAAAACTTCC
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.34, C:0.21, G:0.23, T:0.23
Consensus pattern (27 bp):
CAGTAAATGTGGCAAAGCCACCAGTAT
Found at i:90773470 original size:27 final size:27
Alignment explanation
Indices: 90773329--90773458 Score: 215
Period size: 27 Copynumber: 4.8 Consensus size: 27
90773319 GCATAATTGA
* * *
90773329 CATTTTTCCATACAAGGGCATTACGGT
1 CATTTTACCCTACAGGGGCATTACGGT
*
90773356 CATTTTACCCTATAGGGGCATTACGGT
1 CATTTTACCCTACAGGGGCATTACGGT
90773383 CATTTTACCCTACAGGGGCATTACGGT
1 CATTTTACCCTACAGGGGCATTACGGT
*
90773410 TATTTTACCCTACAGGGGCATTACGGT
1 CATTTTACCCTACAGGGGCATTACGGT
90773437 CATTTTACCCTACAGGGGCATT
1 CATTTTACCCTACAGGGGCATT
90773459 TCGATAATTT
Statistics
Matches: 96, Mismatches: 7, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 96 1.00
ACGTcount: A:0.23, C:0.24, G:0.21, T:0.32
Consensus pattern (27 bp):
CATTTTACCCTACAGGGGCATTACGGT
Found at i:90773965 original size:16 final size:17
Alignment explanation
Indices: 90773922--90773967 Score: 67
Period size: 17 Copynumber: 2.8 Consensus size: 17
90773912 TACATTTTAT
*
90773922 CCATGTGGGCCCATAGT
1 CCATGTGGGCCCATAGC
*
90773939 CCGTGTGGGCCCATAGC
1 CCATGTGGGCCCATAGC
90773956 CCAT-TGGGCCCA
1 CCATGTGGGCCCA
90773968 CACGGCCCAG
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
16 8 0.31
17 18 0.69
ACGTcount: A:0.15, C:0.35, G:0.30, T:0.20
Consensus pattern (17 bp):
CCATGTGGGCCCATAGC
Found at i:90778867 original size:13 final size:13
Alignment explanation
Indices: 90778851--90778879 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
90778841 GGCTGAAGAA
90778851 AAAAACCTTTCTC
1 AAAAACCTTTCTC
90778864 AAAAACCTTTCTC
1 AAAAACCTTTCTC
90778877 AAA
1 AAA
90778880 GGGAGAAATC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.45, C:0.28, G:0.00, T:0.28
Consensus pattern (13 bp):
AAAAACCTTTCTC
Found at i:90799360 original size:93 final size:93
Alignment explanation
Indices: 90799201--90799371 Score: 290
Period size: 93 Copynumber: 1.8 Consensus size: 93
90799191 GCCCCTAAGT
*
90799201 GAACTCGGACTCAACTCAACGAGCTCGAGCATTCGCATCCATAGGTGAACTCAGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGAGCATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
90799266 CGAGTTCGGATGCCTAGTTACATTTCAC
66 CGAGTTCGGATGCCTAGTTACATTTCAC
* * *
90799294 GAACTTGGACTCAACTCAACGAGTTCG-GACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 GAACTCGGACTCAACTCAACGAGCTCGAG-CATTCGCATCCATAAGTGAACTCAGACTCAACTCA
90799358 ACGAGTTCGGATGC
65 ACGAGTTCGGATGC
90799372 TCAACCATCC
Statistics
Matches: 73, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
92 1 0.01
93 72 0.99
ACGTcount: A:0.29, C:0.28, G:0.20, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGAGCATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATTTCAC
Found at i:90799368 original size:46 final size:47
Alignment explanation
Indices: 90799196--90799368 Score: 196
Period size: 46 Copynumber: 3.7 Consensus size: 47
90799186 AACCCGCCCC
*
90799196 TAAGTGAACTCGGACTCAACTCAACGAGCTC-GAGCATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGAGCATTCGCATCCA
* * * *
90799242 TAGGTGAACTCAGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT--T
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA-G-C-A-TTCGCATCCA
* * *
90799290 TCA-CGAACTTGGACTCAACTCAACGAGTTCGGA-CATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGAGCATTCGCATCCA
90799335 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
90799369 TGCTCAACCA
Statistics
Matches: 103, Mismatches: 15, Indels: 18
0.76 0.11 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 1 0.01
45 2 0.02
46 56 0.54
47 29 0.28
48 2 0.02
49 1 0.01
50 4 0.04
51 2 0.02
ACGTcount: A:0.30, C:0.27, G:0.20, T:0.23
Consensus pattern (47 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGAGCATTCGCATCCA
Found at i:90801183 original size:27 final size:27
Alignment explanation
Indices: 90801150--90801207 Score: 98
Period size: 27 Copynumber: 2.1 Consensus size: 27
90801140 GTTAAAATGG
*
90801150 TGACCGAAATACCCCCATAGGGTAAAA
1 TGACCGAAATACCCCCATAAGGTAAAA
*
90801177 TGACCGAAATACCCTCATAAGGTAAAA
1 TGACCGAAATACCCCCATAAGGTAAAA
90801204 TGAC
1 TGAC
90801208 TATTTTGCCT
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
27 29 1.00
ACGTcount: A:0.41, C:0.24, G:0.17, T:0.17
Consensus pattern (27 bp):
TGACCGAAATACCCCCATAAGGTAAAA
Found at i:90801223 original size:27 final size:27
Alignment explanation
Indices: 90801197--90801412 Score: 243
Period size: 27 Copynumber: 8.0 Consensus size: 27
90801187 ACCCTCATAA
* **
90801197 GGTAAAATGACTATTTTGCCTTTATAA
1 GGTAAAATGACTATTTTGCCCTTATGT
* * * *
90801224 GATAAAATAACTGTTTTGCCCCTATGT
1 GGTAAAATGACTATTTTGCCCTTATGT
* *
90801251 GATAAAATGATTATTTTGCCCTTATGT
1 GGTAAAATGACTATTTTGCCCTTATGT
*
90801278 GGTTAAATGACTATTTTGCCCTTATGT
1 GGTAAAATGACTATTTTGCCCTTATGT
* * * *
90801305 GGTAGAATGATTGTTTTTCCCTTATGT
1 GGTAAAATGACTATTTTGCCCTTATGT
* *
90801332 GGTAAAATGATTGTTTTGCCCTTATGT
1 GGTAAAATGACTATTTTGCCCTTATGT
* *
90801359 GGCAAAATGACTATTTTGCCCTTATAT
1 GGTAAAATGACTATTTTGCCCTTATGT
* * *
90801386 GGTAAGATGACTGTTTTGCCCCTATGT
1 GGTAAAATGACTATTTTGCCCTTATGT
90801413 AATGTATGTT
Statistics
Matches: 159, Mismatches: 30, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 159 1.00
ACGTcount: A:0.25, C:0.14, G:0.19, T:0.42
Consensus pattern (27 bp):
GGTAAAATGACTATTTTGCCCTTATGT
Found at i:90801290 original size:81 final size:81
Alignment explanation
Indices: 90801200--90801412 Score: 300
Period size: 81 Copynumber: 2.6 Consensus size: 81
90801190 CTCATAAGGT
* * * *
90801200 AAAATGACTATTTTGCCTTTATAAGATAAAATAACTGTTTTGCCCCTATGTGATAAAATGATTAT
1 AAAATGACTATTTTGCCCTTATATGGTAAAATGACTGTTTTGCCCCTATGTGATAAAATGATTAT
*
90801265 TTTGCCCTTATGTGGT
66 TTTGCCCTTATGTGGC
* * * * * * * *
90801281 TAAATGACTATTTTGCCCTTATGTGGTAGAATGATTGTTTTTCCCTTATGTGGTAAAATGATTGT
1 AAAATGACTATTTTGCCCTTATATGGTAAAATGACTGTTTTGCCCCTATGTGATAAAATGATTAT
90801346 TTTGCCCTTATGTGGC
66 TTTGCCCTTATGTGGC
*
90801362 AAAATGACTATTTTGCCCTTATATGGTAAGATGACTGTTTTGCCCCTATGT
1 AAAATGACTATTTTGCCCTTATATGGTAAAATGACTGTTTTGCCCCTATGT
90801413 AATGTATGTT
Statistics
Matches: 112, Mismatches: 20, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
81 112 1.00
ACGTcount: A:0.26, C:0.15, G:0.18, T:0.42
Consensus pattern (81 bp):
AAAATGACTATTTTGCCCTTATATGGTAAAATGACTGTTTTGCCCCTATGTGATAAAATGATTAT
TTTGCCCTTATGTGGC
Found at i:90801745 original size:18 final size:18
Alignment explanation
Indices: 90801722--90801772 Score: 66
Period size: 18 Copynumber: 2.8 Consensus size: 18
90801712 ACTTGCATAT
*
90801722 TGTTTACTATTTCTACAC
1 TGTTTACTATTACTACAC
* *
90801740 TGTTTACTGTTACTGCAC
1 TGTTTACTATTACTACAC
*
90801758 TGTTTACTGTTACTA
1 TGTTTACTATTACTA
90801773 GAAAGGGCCA
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 29 1.00
ACGTcount: A:0.20, C:0.20, G:0.12, T:0.49
Consensus pattern (18 bp):
TGTTTACTATTACTACAC
Found at i:90804040 original size:29 final size:29
Alignment explanation
Indices: 90804005--90804078 Score: 112
Period size: 29 Copynumber: 2.6 Consensus size: 29
90803995 GTTGTGAGAT
* *
90804005 TGGCACTAAGTGTGCGGGCTTAAAATGCA
1 TGGCACTAAGTGTGCGAGCTTAAAATACA
* *
90804034 TGGCACTAAGTGTGCGAGTTTAAAGTACA
1 TGGCACTAAGTGTGCGAGCTTAAAATACA
90804063 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
90804079 TGGTTGATTA
Statistics
Matches: 41, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
29 41 1.00
ACGTcount: A:0.27, C:0.16, G:0.31, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGCTTAAAATACA
Found at i:90806697 original size:47 final size:44
Alignment explanation
Indices: 90806629--90806796 Score: 180
Period size: 47 Copynumber: 3.6 Consensus size: 44
90806619 TGTGTGTGCT
*
90806629 AGTGTAAGACATGTCTAGGACATGCATCGGCCACATTATGAGAGAC
1 AGTGTAAGACATGTCTGGGACATGCATCGG-CACA-TATGAGAGAC
*
90806675 AGTGTAAGACCATGTCTGGGACATGCATCGG--C-TATGAGATGTGC
1 AGTGTAAGA-CATGTCTGGGACATGCATCGGCACATATGAGA-G-AC
* *
90806719 TAGTGTAAGACATGTCTGGGACATGCATCGACACAGATATGTGAGACC
1 -AGTGTAAGACATGTCTGGGACATGCATCGGCAC--ATATGAGAGA-C
90806767 AGTGTAAGACCATGTCTGGGACATGGCATC
1 AGTGTAAGA-CATGTCTGGGACAT-GCATC
90806797 AGCATTATAC
Statistics
Matches: 105, Mismatches: 5, Indels: 21
0.80 0.04 0.16
Matches are distributed among these distances:
42 7 0.07
43 1 0.01
44 22 0.21
45 9 0.09
46 10 0.10
47 29 0.28
48 16 0.15
49 11 0.10
ACGTcount: A:0.29, C:0.19, G:0.29, T:0.23
Consensus pattern (44 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCACATATGAGAGAC
Found at i:90814470 original size:29 final size:29
Alignment explanation
Indices: 90814437--90814495 Score: 84
Period size: 29 Copynumber: 2.0 Consensus size: 29
90814427 GTTCAGCAAG
* *
90814437 TGTGAATTCTGGCTGCG-GAAAGTGACATT
1 TGTGAATTCTAGCTGCGAG-AAGAGACATT
90814466 TGTGAATTCTAGCTGCGAGAAGAGACATT
1 TGTGAATTCTAGCTGCGAGAAGAGACATT
90814495 T
1 T
90814496 TTGGGACATT
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
29 26 0.96
30 1 0.04
ACGTcount: A:0.27, C:0.14, G:0.29, T:0.31
Consensus pattern (29 bp):
TGTGAATTCTAGCTGCGAGAAGAGACATT
Found at i:90818416 original size:19 final size:20
Alignment explanation
Indices: 90818375--90818420 Score: 58
Period size: 19 Copynumber: 2.4 Consensus size: 20
90818365 AATAACTCAA
*
90818375 TTTATATGGGATTTTTAGCT
1 TTTATATGGGATTTTGAGCT
**
90818395 TTTA-ATGGGATTTTGATTT
1 TTTATATGGGATTTTGAGCT
90818414 TTTATAT
1 TTTATAT
90818421 TAAACTGCTG
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
19 16 0.73
20 6 0.27
ACGTcount: A:0.22, C:0.02, G:0.17, T:0.59
Consensus pattern (20 bp):
TTTATATGGGATTTTGAGCT
Found at i:90820335 original size:27 final size:25
Alignment explanation
Indices: 90820297--90820392 Score: 102
Period size: 27 Copynumber: 3.6 Consensus size: 25
90820287 CAATATTGCA
*
90820297 GCAAAGCTACCAGTAACAGTACATGTG
1 GCAAAGCCACCAGTAACA-TA-ATGTG
*
90820324 GCAAAGCCACCAGTATCTATATATGTG
1 GCAAAGCCACCAGTAAC-ATA-ATGTG
*
90820351 GCAAAGCCACCGGTAACAATAATTGTG
1 GCAAAGCCACCAGTAAC-ATAA-TGTG
*
90820378 GCAGAGCCACCAGTA
1 GCAAAGCCACCAGTA
90820393 TAATACTAAC
Statistics
Matches: 59, Mismatches: 8, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
26 1 0.02
27 57 0.97
28 1 0.02
ACGTcount: A:0.35, C:0.24, G:0.22, T:0.19
Consensus pattern (25 bp):
GCAAAGCCACCAGTAACATAATGTG
Found at i:90828074 original size:27 final size:26
Alignment explanation
Indices: 90828043--90828117 Score: 78
Period size: 27 Copynumber: 2.8 Consensus size: 26
90828033 CAATATCGCA
90828043 GCAAAGCTGCTAGTAACAGTATATGTG
1 GCAAAGC-GCTAGTAACAGTATATGTG
* *
90828070 GCAAAGCGACCAGTATCAGTATATGTG
1 GCAAAGCG-CTAGTAACAGTATATGTG
* * *
90828097 GTAAAGCCACTGGTAACAGTA
1 GCAAAG-CGCTAGTAACAGTA
90828118 ATTGTTGTAG
Statistics
Matches: 39, Mismatches: 7, Indels: 4
0.78 0.14 0.08
Matches are distributed among these distances:
26 1 0.03
27 37 0.95
28 1 0.03
ACGTcount: A:0.35, C:0.17, G:0.25, T:0.23
Consensus pattern (26 bp):
GCAAAGCGCTAGTAACAGTATATGTG
Found at i:90837296 original size:14 final size:13
Alignment explanation
Indices: 90837274--90837308 Score: 52
Period size: 14 Copynumber: 2.6 Consensus size: 13
90837264 TTAATAAAAA
*
90837274 AATAGATAATTATT
1 AATATATAATTA-T
90837288 AATATATAATTAT
1 AATATATAATTAT
90837301 AATATATA
1 AATATATA
90837309 TTAATTATTA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
13 9 0.45
14 11 0.55
ACGTcount: A:0.54, C:0.00, G:0.03, T:0.43
Consensus pattern (13 bp):
AATATATAATTAT
Found at i:90837444 original size:22 final size:24
Alignment explanation
Indices: 90837399--90837446 Score: 66
Period size: 22 Copynumber: 2.1 Consensus size: 24
90837389 TAATCTTTAA
90837399 TATATAATTATATCTATTATAATT
1 TATATAATTATATCTATTATAATT
90837423 TATAT-ATTA-ATCT-TTATCAATT
1 TATATAATTATATCTATTAT-AATT
90837445 TA
1 TA
90837447 GCATAGAAAT
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
21 4 0.17
22 10 0.43
23 4 0.17
24 5 0.22
ACGTcount: A:0.40, C:0.06, G:0.00, T:0.54
Consensus pattern (24 bp):
TATATAATTATATCTATTATAATT
Found at i:90838130 original size:25 final size:24
Alignment explanation
Indices: 90838083--90838136 Score: 65
Period size: 25 Copynumber: 2.2 Consensus size: 24
90838073 TAGTTTTCTC
*
90838083 TTAATTTTTAATTTTATTCAATTA
1 TTAATTTTTAATTTCATTCAATTA
*
90838107 GTTAATTTTTCAA-TTCATTGAATTA
1 -TTAATTTTT-AATTTCATTCAATTA
90838132 TTAAT
1 TTAAT
90838137 AATTTTTATT
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
24 5 0.19
25 19 0.73
26 2 0.08
ACGTcount: A:0.33, C:0.06, G:0.04, T:0.57
Consensus pattern (24 bp):
TTAATTTTTAATTTCATTCAATTA
Found at i:90844545 original size:10 final size:10
Alignment explanation
Indices: 90844530--90844578 Score: 55
Period size: 10 Copynumber: 4.8 Consensus size: 10
90844520 ATGAACATGT
90844530 TTAATTTTAA
1 TTAATTTTAA
90844540 TTAATTTTATA
1 TTAATTTTA-A
* *
90844551 TCAAATTTTGA
1 T-TAATTTTAA
90844562 TTAATTTTAA
1 TTAATTTTAA
90844572 TT-ATTTT
1 TTAATTTT
90844579 CGACAAATTT
Statistics
Matches: 33, Mismatches: 4, Indels: 5
0.79 0.10 0.12
Matches are distributed among these distances:
9 5 0.15
10 18 0.55
11 4 0.12
12 6 0.18
ACGTcount: A:0.35, C:0.02, G:0.02, T:0.61
Consensus pattern (10 bp):
TTAATTTTAA
Found at i:90846765 original size:12 final size:11
Alignment explanation
Indices: 90846732--90846765 Score: 50
Period size: 11 Copynumber: 3.0 Consensus size: 11
90846722 ACTCGGTCAA
90846732 TTTTAAAACTT
1 TTTTAAAACTT
*
90846743 TTTTCAAACTT
1 TTTTAAAACTT
90846754 TGTTTAAAACTT
1 T-TTTAAAACTT
90846766 CTTATCTTGG
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
11 11 0.55
12 9 0.45
ACGTcount: A:0.32, C:0.12, G:0.03, T:0.53
Consensus pattern (11 bp):
TTTTAAAACTT
Found at i:90849109 original size:22 final size:23
Alignment explanation
Indices: 90849084--90849126 Score: 70
Period size: 22 Copynumber: 1.9 Consensus size: 23
90849074 TATCCCCACA
*
90849084 TGGAGTGTAG-GGTTGGATGGAG
1 TGGAGTGTAGAGGATGGATGGAG
90849106 TGGAGTGTAGAGGATGGATGG
1 TGGAGTGTAGAGGATGGATGG
90849127 GTAGGATCTC
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
22 10 0.53
23 9 0.47
ACGTcount: A:0.21, C:0.00, G:0.53, T:0.26
Consensus pattern (23 bp):
TGGAGTGTAGAGGATGGATGGAG
Found at i:90857991 original size:248 final size:248
Alignment explanation
Indices: 90857553--90858051 Score: 989
Period size: 248 Copynumber: 2.0 Consensus size: 248
90857543 GACGATGCGA
90857553 TAGCAATACCTTTTTCTATTTTGATTAGGCAAATTTCGAGGCCAAAATTTTCTTTTAGGAGGGTA
1 TAGCAATACCTTTTTCTATTTTGATTAGGCAAATTTCGAGGCCAAAATTTTCTTTTAGGAGGGTA
90857618 GAATTATAACGCCCCAATCTCTCAAATCCCGAAAACTGTGTTAAAATTATTATTGTGTGTAAGTG
66 GAATTATAACGCCCCAATCTCTCAAATCCCGAAAACTGTGTTAAAATTATTATTGTGTGTAAGTG
90857683 ACATGGGTGTATGTTTGCCTTAGTGGTTTAGTGCTTTGGGAGTGTCTGGGAAGTCTTTGATTTAA
131 ACATGGGTGTATGTTTGCCTTAGTGGTTTAGTGCTTTGGGAGTGTCTGGGAAGTCTTTGATTTAA
90857748 GCCTTGACCTTAGCAAATTTTTGCTTCTAATTGAATAAATCCTTGGTTACTGT
196 GCCTTGACCTTAGCAAATTTTTGCTTCTAATTGAATAAATCCTTGGTTACTGT
90857801 TAGCAATACCTTTTTCTATTTTGATTAGGCAAATTTCGAGGCCAAAATTTTCTTTTAGGAGGGTA
1 TAGCAATACCTTTTTCTATTTTGATTAGGCAAATTTCGAGGCCAAAATTTTCTTTTAGGAGGGTA
*
90857866 GAATTATAATGCCCCAATCTCTCAAATCCCGAAAACTGTGTTAAAATTATTATTGTGTGTAAGTG
66 GAATTATAACGCCCCAATCTCTCAAATCCCGAAAACTGTGTTAAAATTATTATTGTGTGTAAGTG
90857931 ACATGGGTGTATGTTTGCCTTAGTGGTTTAGTGCTTTGGGAGTGTCTGGGAAGTCTTTGATTTAA
131 ACATGGGTGTATGTTTGCCTTAGTGGTTTAGTGCTTTGGGAGTGTCTGGGAAGTCTTTGATTTAA
90857996 GCCTTGACCTTAGCAAATTTTTGCTTCTAATTGAATAAATCCTTGGTTACTGT
196 GCCTTGACCTTAGCAAATTTTTGCTTCTAATTGAATAAATCCTTGGTTACTGT
90858049 TAG
1 TAG
90858052 TAGACTTTTA
Statistics
Matches: 250, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
248 250 1.00
ACGTcount: A:0.26, C:0.15, G:0.21, T:0.39
Consensus pattern (248 bp):
TAGCAATACCTTTTTCTATTTTGATTAGGCAAATTTCGAGGCCAAAATTTTCTTTTAGGAGGGTA
GAATTATAACGCCCCAATCTCTCAAATCCCGAAAACTGTGTTAAAATTATTATTGTGTGTAAGTG
ACATGGGTGTATGTTTGCCTTAGTGGTTTAGTGCTTTGGGAGTGTCTGGGAAGTCTTTGATTTAA
GCCTTGACCTTAGCAAATTTTTGCTTCTAATTGAATAAATCCTTGGTTACTGT
Found at i:90866218 original size:21 final size:20
Alignment explanation
Indices: 90866189--90866228 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 20
90866179 ATTTGAAACA
90866189 GGGCACACGCCCGTGTGGAT
1 GGGCACACGCCCGTGTGGAT
**
90866209 GGGCAACACGGTCGTGTGGA
1 GGGC-ACACGCCCGTGTGGA
90866229 ACTTGAACAT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 4 0.24
21 13 0.76
ACGTcount: A:0.17, C:0.25, G:0.42, T:0.15
Consensus pattern (20 bp):
GGGCACACGCCCGTGTGGAT
Found at i:90873850 original size:93 final size:93
Alignment explanation
Indices: 90873737--90873908 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
90873727 CGCCCATAAG
* *
90873737 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
90873802 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
*
90873830 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
90873895 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
90873909 TCAACCATCC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:90873905 original size:46 final size:46
Alignment explanation
Indices: 90873730--90873905 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
90873720 TGTAACCCGC
* * *
90873730 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* *
90873776 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
*
90873826 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
90873869 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
90873906 TGCTCAACCA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 63 0.57
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:90881404 original size:93 final size:93
Alignment explanation
Indices: 90881291--90881462 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
90881281 CGCCCATAAG
* *
90881291 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
90881356 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
*
90881384 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
90881449 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
90881463 TCAACCATCC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:90881459 original size:46 final size:46
Alignment explanation
Indices: 90881284--90881459 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
90881274 TGTAACCCGC
* * *
90881284 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* *
90881330 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
*
90881380 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
90881423 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
90881460 TGCTCAACCA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 63 0.57
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:90885837 original size:22 final size:22
Alignment explanation
Indices: 90885812--90885856 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
90885802 AGTAGCAGAG
*
90885812 ATATGAATATAAACATGCAAAC
1 ATATCAATATAAACATGCAAAC
* * *
90885834 ATATCCATGTAAACCTGCAAAC
1 ATATCAATATAAACATGCAAAC
90885856 A
1 A
90885857 AACACATCAC
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.49, C:0.20, G:0.09, T:0.22
Consensus pattern (22 bp):
ATATCAATATAAACATGCAAAC
Found at i:90892592 original size:30 final size:30
Alignment explanation
Indices: 90892557--90892614 Score: 82
Period size: 30 Copynumber: 2.0 Consensus size: 30
90892547 CAATTAATTT
* *
90892557 TAAAATTTAGTTG-CTCTTTTAGTAAATAA
1 TAAAAATTAGGTGCCTCTTTTAGTAAATAA
*
90892586 TAAAAATTAGGTGCCTCTTTTTGTAAATA
1 TAAAAATTAGGTGCCTCTTTTAGTAAATA
90892615 TTTTCAGAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
29 11 0.44
30 14 0.56
ACGTcount: A:0.36, C:0.09, G:0.12, T:0.43
Consensus pattern (30 bp):
TAAAAATTAGGTGCCTCTTTTAGTAAATAA
Found at i:90892795 original size:17 final size:18
Alignment explanation
Indices: 90892775--90892810 Score: 56
Period size: 17 Copynumber: 2.1 Consensus size: 18
90892765 TAATAATGTT
90892775 TTAATAAATTAATA-GCA
1 TTAATAAATTAATATGCA
*
90892792 TTAATAATTTAATATGCA
1 TTAATAAATTAATATGCA
90892810 T
1 T
90892811 ATATTTGATT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 13 0.76
18 4 0.24
ACGTcount: A:0.47, C:0.06, G:0.06, T:0.42
Consensus pattern (18 bp):
TTAATAAATTAATATGCA
Found at i:90895942 original size:12 final size:12
Alignment explanation
Indices: 90895925--90895950 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
90895915 ACATGTTGAA
90895925 TTATAATTAATT
1 TTATAATTAATT
90895937 TTATAATTAATT
1 TTATAATTAATT
90895949 TT
1 TT
90895951 GATTAATTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (12 bp):
TTATAATTAATT
Found at i:90896542 original size:19 final size:19
Alignment explanation
Indices: 90896514--90896557 Score: 52
Period size: 19 Copynumber: 2.3 Consensus size: 19
90896504 CTCATTTACA
*
90896514 TCTCTTCTCTTACAATTCT
1 TCTCTCCTCTTACAATTCT
* * *
90896533 TCTCTCCTCTTTCACTTTT
1 TCTCTCCTCTTACAATTCT
90896552 TCTCTC
1 TCTCTC
90896558 ATTTTCCCAT
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.09, C:0.36, G:0.00, T:0.55
Consensus pattern (19 bp):
TCTCTCCTCTTACAATTCT
Found at i:90898643 original size:16 final size:16
Alignment explanation
Indices: 90898622--90898654 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
90898612 GTTATTATAA
90898622 GAAAATTAAACTAAAG
1 GAAAATTAAACTAAAG
*
90898638 GAAAATTCAACTAAAG
1 GAAAATTAAACTAAAG
90898654 G
1 G
90898655 CAAGTCCATA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.58, C:0.09, G:0.15, T:0.18
Consensus pattern (16 bp):
GAAAATTAAACTAAAG
Found at i:90901141 original size:27 final size:27
Alignment explanation
Indices: 90901087--90901197 Score: 136
Period size: 27 Copynumber: 4.1 Consensus size: 27
90901077 AGCATGGCTG
* * *
90901087 CCAGAACAGATAA-TGTGACAGTGTCA
1 CCAGAACAGATAATTGTGGCAGAGCCA
90901113 CCAGAACAGATAATTGTGGCAGAGCCA
1 CCAGAACAGATAATTGTGGCAGAGCCA
* *
90901140 CCAGAATAGAT-ATATGTGGCAGTGCCA
1 CCAGAACAGATAAT-TGTGGCAGAGCCA
* *
90901167 CCAGATCAGATAATTGTGGCATAGCCA
1 CCAGAACAGATAATTGTGGCAGAGCCA
90901194 CCAG
1 CCAG
90901198 GACGCTTCCT
Statistics
Matches: 73, Mismatches: 9, Indels: 5
0.84 0.10 0.06
Matches are distributed among these distances:
26 15 0.21
27 56 0.77
28 2 0.03
ACGTcount: A:0.35, C:0.22, G:0.24, T:0.19
Consensus pattern (27 bp):
CCAGAACAGATAATTGTGGCAGAGCCA
Found at i:90901170 original size:54 final size:53
Alignment explanation
Indices: 90901087--90901197 Score: 168
Period size: 54 Copynumber: 2.1 Consensus size: 53
90901077 AGCATGGCTG
*
90901087 CCAGAACAGATAATGTGACAGTGTCACCAGAACAGATAATTGTGGCAGAGCCA
1 CCAGAACAGATAATGTGACAGTGCCACCAGAACAGATAATTGTGGCAGAGCCA
* * * *
90901140 CCAGAATAGATATATGTGGCAGTGCCACCAGATCAGATAATTGTGGCATAGCCA
1 CCAGAACAGATA-ATGTGACAGTGCCACCAGAACAGATAATTGTGGCAGAGCCA
90901194 CCAG
1 CCAG
90901198 GACGCTTCCT
Statistics
Matches: 52, Mismatches: 5, Indels: 1
0.90 0.09 0.02
Matches are distributed among these distances:
53 11 0.21
54 41 0.79
ACGTcount: A:0.35, C:0.22, G:0.24, T:0.19
Consensus pattern (53 bp):
CCAGAACAGATAATGTGACAGTGCCACCAGAACAGATAATTGTGGCAGAGCCA
Found at i:90903369 original size:79 final size:79
Alignment explanation
Indices: 90903187--90903417 Score: 324
Period size: 79 Copynumber: 2.9 Consensus size: 79
90903177 GGATATAGCT
* * *
90903187 ACTCGCTCAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGACA
1 ACTCGCACAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCACAAATGCCTTCGGGACA
90903251 TAGCCCGGTTAAAGTA
65 TAGCCCGGTT-AAGTA
* * * *
90903267 ACTCGCACAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCACACCAATGCCTTTGGG-CTT
1 ACTCGCACAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACAAATGCCTTCGGGACAT
90903331 AGCCCGGAATT-AGTA
66 AGCCCGG--TTAAGTA
*
90903346 ACTCGCACAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACAAATGCCTTCGGGACCT
1 ACTCGCACAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACAAATGCCTTCGGGACAT
*
90903411 AACCCGG
66 AGCCCGG
90903418 ATATCATTCG
Statistics
Matches: 135, Mismatches: 12, Indels: 8
0.87 0.08 0.05
Matches are distributed among these distances:
79 71 0.53
80 60 0.44
81 4 0.03
ACGTcount: A:0.27, C:0.29, G:0.21, T:0.23
Consensus pattern (79 bp):
ACTCGCACAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACAAATGCCTTCGGGACAT
AGCCCGGTTAAGTA
Found at i:90903377 original size:119 final size:120
Alignment explanation
Indices: 90903196--90903419 Score: 346
Period size: 119 Copynumber: 1.9 Consensus size: 120
90903186 TACTCGCTCA
* *
90903196 AATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACATAGCCCGG-T
1 AATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACATAACCCGGAT
*
90903260 TAAAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCACACC
66 T-AAGTAACTCGCACAAATGCCTTCGGGACCTAACCCGGATTTAGTAACTCACACC
* * *
90903316 AATGCCTTTGGG-CTTAGCCCGGA-ATTAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGA
1 AATGCCTTCGGGACATAGCCCGGATA-TAGTAACTCGCACAAATGCCTTCGGGACATAACCCGGA
*
90903379 TTTAGTAACTCGCACAAATGCCTTCGGGACCTAACCCGGAT
65 TTAAGTAACTCGCACAAATGCCTTCGGGACCTAACCCGGAT
90903420 ATCATTCGAA
Statistics
Matches: 95, Mismatches: 7, Indels: 5
0.89 0.07 0.05
Matches are distributed among these distances:
118 1 0.01
119 81 0.85
120 13 0.14
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.23
Consensus pattern (120 bp):
AATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACATAACCCGGAT
TAAGTAACTCGCACAAATGCCTTCGGGACCTAACCCGGATTTAGTAACTCACACC
Found at i:90903418 original size:40 final size:40
Alignment explanation
Indices: 90903161--90903419 Score: 321
Period size: 40 Copynumber: 6.5 Consensus size: 40
90903151 GAATCACATA
* * * *
90903161 CCTTCGGAATTTAA-CCGGATATAGCT-ACTCGCTCAAATG
1 CCTTCGGGACTTAACCCGGATTTAG-TAACTCGCACAAATG
* *
90903200 CCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAACCCGGATT-TAGTAACTCGCACAAATG
* * *
90903240 CCTTCGGGACATAGCCCGG-TTAAAGTAACTCGCACAAATG
1 CCTTCGGGACTTAACCCGGATT-TAGTAACTCGCACAAATG
* *
90903280 CCTTCGGGACTTAACCCGGATTTAGTAACTCACACCAATG
1 CCTTCGGGACTTAACCCGGATTTAGTAACTCGCACAAATG
* * *
90903320 CCTTTGGG-CTTAGCCCGGAATTAGTAACTCGCACAAATG
1 CCTTCGGGACTTAACCCGGATTTAGTAACTCGCACAAATG
90903359 CCTTCGGGACTTAACCCGGATTTAGTAACTCGCACAAATG
1 CCTTCGGGACTTAACCCGGATTTAGTAACTCGCACAAATG
*
90903399 CCTTCGGGACCTAACCCGGAT
1 CCTTCGGGACTTAACCCGGAT
90903420 ATCATTCGAA
Statistics
Matches: 194, Mismatches: 21, Indels: 9
0.87 0.09 0.04
Matches are distributed among these distances:
39 46 0.24
40 146 0.75
41 2 0.01
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAACCCGGATTTAGTAACTCGCACAAATG
Found at i:90906088 original size:24 final size:24
Alignment explanation
Indices: 90906060--90906112 Score: 97
Period size: 24 Copynumber: 2.2 Consensus size: 24
90906050 CCAACACCGT
90906060 TCTCCCTTATCAGCTCCTAAATCC
1 TCTCCCTTATCAGCTCCTAAATCC
*
90906084 TCTCCCTTATCAGCTCCTAAATCT
1 TCTCCCTTATCAGCTCCTAAATCC
90906108 TCTCC
1 TCTCC
90906113 TGACAGCCTT
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
24 28 1.00
ACGTcount: A:0.19, C:0.42, G:0.04, T:0.36
Consensus pattern (24 bp):
TCTCCCTTATCAGCTCCTAAATCC
Found at i:90909020 original size:21 final size:20
Alignment explanation
Indices: 90908992--90909030 Score: 60
Period size: 21 Copynumber: 1.9 Consensus size: 20
90908982 GTTTCATGAT
*
90908992 AAAATTTTCTAAGTTTTCCC
1 AAAATTTTCAAAGTTTTCCC
90909012 AAAAGTTTTCAAAGTTTTC
1 AAAA-TTTTCAAAGTTTTC
90909031 GGTTTAGTCC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 4 0.24
21 13 0.76
ACGTcount: A:0.33, C:0.15, G:0.08, T:0.44
Consensus pattern (20 bp):
AAAATTTTCAAAGTTTTCCC
Found at i:90909914 original size:37 final size:37
Alignment explanation
Indices: 90909863--90910185 Score: 392
Period size: 37 Copynumber: 8.8 Consensus size: 37
90909853 ACATGTGGTA
*
90909863 CGTGTAAGACCATAGCTGGGCTATGGCATCGTAATAG
1 CGTGTAAGACCATAGCTGGGCTATGGCATCGTGATAG
* *
90909900 TGTGTAAGACCATAGCTGGGCTATGGCATCGTAATAG
1 CGTGTAAGACCATAGCTGGGCTATGGCATCGTGATAG
* *
90909937 TGTGTAAGACCATAGCTGGGCTATGGCATCGTAATAG
1 CGTGTAAGACCATAGCTGGGCTATGGCATCGTGATAG
* **
90909974 TGTGTAAGACCATAGCTGGGCTATGGCATTTTGATA-
1 CGTGTAAGACCATAGCTGGGCTATGGCATCGTGATAG
* *
90910010 CGTGCAAGACCATAACTGGGCTATGGCATCGTGAT-G
1 CGTGTAAGACCATAGCTGGGCTATGGCATCGTGATAG
* * * *
90910046 ACATGTAAGACCATAGCTGTGTTATGGCATTGTGATA-
1 -CGTGTAAGACCATAGCTGGGCTATGGCATCGTGATAG
* *
90910083 TGTGTAAGACCATAGCTGGGCTATGGCATCGTGATGACA
1 CGTGTAAGACCATAGCTGGGCTATGGCATCGTGAT-A-G
*
90910122 CGTG--AGACCATAGCTGGGCTATGGCATTGTGATA-
1 CGTGTAAGACCATAGCTGGGCTATGGCATCGTGATAG
90910156 CGTGTAAGACCAT-GTCTGGGAC-ATGGCATC
1 CGTGTAAGACCATAG-CTGGG-CTATGGCATC
90910186 AATATGAGAT
Statistics
Matches: 253, Mismatches: 23, Indels: 21
0.85 0.08 0.07
Matches are distributed among these distances:
34 4 0.02
35 1 0.00
36 80 0.32
37 165 0.65
39 3 0.01
ACGTcount: A:0.26, C:0.18, G:0.29, T:0.27
Consensus pattern (37 bp):
CGTGTAAGACCATAGCTGGGCTATGGCATCGTGATAG
Found at i:90910061 original size:73 final size:73
Alignment explanation
Indices: 90909856--90910185 Score: 425
Period size: 73 Copynumber: 4.5 Consensus size: 73
90909846 TGGCAATACA
* **
90909856 TGTGGTACGTGTAAGACCATAGCTGGGCTATGGCATCGTAATAGTGTGTAAGACCATAGCTGGGC
1 TGTGATACGTGTAAGACCATAGCTGGGCTATGGCATCGTAATAGCATGTAAGACCATAGCTGGGC
90909921 TATGGCAT
66 TATGGCAT
* * * **
90909929 CGTAATAGTGTGTAAGACCATAGCTGGGCTATGGCATCGTAATAGTGTGTAAGACCATAGCTGGG
1 TGTGATA-CGTGTAAGACCATAGCTGGGCTATGGCATCGTAATAGCATGTAAGACCATAGCTGGG
90909994 CTATGGCAT
65 CTATGGCAT
* * * * *
90910003 TTTGATACGTGCAAGACCATAACTGGGCTATGGCATCGTGAT-GACATGTAAGACCATAGCTGTG
1 TGTGATACGTGTAAGACCATAGCTGGGCTATGGCATCGTAATAG-CATGTAAGACCATAGCTGGG
*
90910067 TTATGGCAT
65 CTATGGCAT
* * * *
90910076 TGTGATATGTGTAAGACCATAGCTGGGCTATGGCATCGTGAT-GACACGTGAGACCATAGCTGGG
1 TGTGATACGTGTAAGACCATAGCTGGGCTATGGCATCGTAATAG-CATGTAAGACCATAGCTGGG
90910140 CTATGGCAT
65 CTATGGCAT
90910149 TGTGATACGTGTAAGACCAT-GTCTGGGAC-ATGGCATC
1 TGTGATACGTGTAAGACCATAG-CTGGG-CTATGGCATC
90910186 AATATGAGAT
Statistics
Matches: 229, Mismatches: 24, Indels: 8
0.88 0.09 0.03
Matches are distributed among these distances:
72 2 0.01
73 157 0.69
74 70 0.31
ACGTcount: A:0.26, C:0.17, G:0.30, T:0.27
Consensus pattern (73 bp):
TGTGATACGTGTAAGACCATAGCTGGGCTATGGCATCGTAATAGCATGTAAGACCATAGCTGGGC
TATGGCAT
Found at i:90910320 original size:48 final size:47
Alignment explanation
Indices: 90910154--90910362 Score: 176
Period size: 48 Copynumber: 4.6 Consensus size: 47
90910144 GGCATTGTGA
* *
90910154 TACGTGTAAGACCATGTCTGGGACATGGCAT--CA---ATATGAGAT
1 TACGTGTAAGACCATATCTGGGATATGGCATCACATCGATATGAGAT
* * *
90910196 CCTA--TATAAGACCATATCTGGGATATGGAATCAACATCGATATGGGA-
1 --TACGTGTAAGACCATATCTGGGATATGGCATC-ACATCGATATGAGAT
*
90910243 -ACTTGTGTAAGACCATATTTGGGATATGGCATCAGCATCGATATGAGAT
1 TAC--GTGTAAGACCATATCTGGGATATGGCATCA-CATCGATATGAGAT
* *
90910292 TACGTGTAAGACCATATCTGGGATATGGC-T----TTGGTATGAGAT
1 TACGTGTAAGACCATATCTGGGATATGGCATCACATCGATATGAGAT
* *
90910334 TTCGTGTAAGACCATATTTGGGATATGGC
1 TACGTGTAAGACCATATCTGGGATATGGC
90910363 TTCTATATGA
Statistics
Matches: 138, Mismatches: 14, Indels: 28
0.77 0.08 0.16
Matches are distributed among these distances:
42 60 0.43
44 3 0.02
45 2 0.01
47 2 0.01
48 69 0.50
50 2 0.01
ACGTcount: A:0.30, C:0.15, G:0.25, T:0.30
Consensus pattern (47 bp):
TACGTGTAAGACCATATCTGGGATATGGCATCACATCGATATGAGAT
Found at i:90910448 original size:42 final size:42
Alignment explanation
Indices: 90910156--90910491 Score: 234
Period size: 42 Copynumber: 7.7 Consensus size: 42
90910146 CATTGTGATA
* * * *
90910156 CGTGTAAGACCATGTCTGGGACATGGCATCAATATGAGA-TC
1 CGTGTAAGACCATATCTGGGATATGGCATCGATATGAGATTT
* * * *
90910197 CTATATAAGACCATATCTGGGATATGGAATCAACATCGATATGGGAACTT
1 C-GTGTAAGACCATATCTGGGATATGG------CATCGATATGAG-ATTT
* *
90910247 -GTGTAAGACCATATTTGGGATATGGCATCAGCATCGATATGAGATTA
1 CGTGTAAGACCATATCTGGGATAT-G-----GCATCGATATGAGATTT
* * *
90910294 CGTGTAAGACCATATCTGGGATATGGCTTTGGTATGAGATTT
1 CGTGTAAGACCATATCTGGGATATGGCATCGATATGAGATTT
* * *
90910336 CGTGTAAGACCATATTTGGGATATGGCTTCTATATGAGATTT
1 CGTGTAAGACCATATCTGGGATATGGCATCGATATGAGATTT
** * * * *
90910378 CGTGTAAGACTGTGTTTGGGATACGGCATCGATATGTGATTT
1 CGTGTAAGACCATATCTGGGATATGGCATCGATATGAGATTT
* * *
90910420 CGTATAAGACCATGTCTGGGACATGGCATCGA-AGTGAGAATTT
1 CGTGTAAGACCATATCTGGGATATGGCATCGATA-TGAG-ATTT
*
90910463 -TTGTAAGACCATAGT-T-GGACTATGGCATC
1 CGTGTAAGACCATA-TCTGGGA-TATGGCATC
90910492 AAGTAAACGA
Statistics
Matches: 235, Mismatches: 40, Indels: 39
0.75 0.13 0.12
Matches are distributed among these distances:
41 5 0.02
42 155 0.66
43 5 0.02
47 3 0.01
48 63 0.27
49 2 0.01
50 1 0.00
54 1 0.00
ACGTcount: A:0.29, C:0.15, G:0.26, T:0.31
Consensus pattern (42 bp):
CGTGTAAGACCATATCTGGGATATGGCATCGATATGAGATTT
Found at i:90931185 original size:15 final size:15
Alignment explanation
Indices: 90931165--90931197 Score: 57
Period size: 15 Copynumber: 2.2 Consensus size: 15
90931155 TGTGTGATTA
90931165 AACTATTTAAAACCT
1 AACTATTTAAAACCT
*
90931180 AACTATTTCAAACCT
1 AACTATTTAAAACCT
90931195 AAC
1 AAC
90931198 ACATTCCTGT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.45, C:0.24, G:0.00, T:0.30
Consensus pattern (15 bp):
AACTATTTAAAACCT
Found at i:90938004 original size:72 final size:71
Alignment explanation
Indices: 90937887--90938028 Score: 187
Period size: 72 Copynumber: 2.0 Consensus size: 71
90937877 ATTGTTGCTG
* * * * *
90937887 CAAGAAGATTGCCGAAGCACCAACGTTGTTGCCGTACAGCACCATTGCCGTCTCACGCTATTGTT
1 CAAGAAGATTACCGAAGCACCAACATTGTTGCCGCACACCACCATTGCCGTCTCAC-CTATCGTT
90937952 GCCGCTA
65 GCCGCTA
* * *
90937959 CAAGAAGATTATCGAAGCACCAACATTGTCT-CCGCACACCGCCATTGCCGTCTCACCTGTCGTT
1 CAAGAAGATTACCGAAGCACCAACATTGT-TGCCGCACACCACCATTGCCGTCTCACCTATCGTT
90938023 GCCGCT
65 GCCGCT
90938029 TCAGTCGTCT
Statistics
Matches: 61, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
71 12 0.20
72 48 0.79
73 1 0.02
ACGTcount: A:0.23, C:0.33, G:0.20, T:0.23
Consensus pattern (71 bp):
CAAGAAGATTACCGAAGCACCAACATTGTTGCCGCACACCACCATTGCCGTCTCACCTATCGTTG
CCGCTA
Found at i:90944125 original size:47 final size:47
Alignment explanation
Indices: 90944047--90944401 Score: 566
Period size: 47 Copynumber: 7.5 Consensus size: 47
90944037 TCCTTCGGGA
* * * * * *
90944047 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
90944094 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
90944141 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGTC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
90944188 CTTATCACACATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
90944235 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
90944282 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGT
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
90944329 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
90944378 CTTATCACATATATACACTTTCAC
1 CTTATCACATATATACACTTTCAC
90944402 TGTAACACCC
Statistics
Matches: 286, Mismatches: 20, Indels: 4
0.92 0.06 0.01
Matches are distributed among these distances:
47 242 0.85
49 44 0.15
ACGTcount: A:0.29, C:0.30, G:0.08, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:90945905 original size:79 final size:81
Alignment explanation
Indices: 90945796--90945978 Score: 232
Period size: 79 Copynumber: 2.3 Consensus size: 81
90945786 TACTCGTTCA
* *
90945796 AATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGG
1 AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCCGG
* *
90945859 ATTTAGTAAC-TCGCACC
65 ATATAGTAACTTAGCA-C
**
90945876 AATGCCTTCGGG-CTTAGCCCGGAAT-TAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGGA
1 AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGA
* *
90945939 TATGGTCACTTAGCAC
66 TATAGTAACTTAGCAC
*
90945955 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAGCCCGGA
90945979 CATCATTCGA
Statistics
Matches: 90, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 3 0.03
79 59 0.66
80 28 0.31
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (81 bp):
AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGA
TATAGTAACTTAGCAC
Found at i:90945978 original size:40 final size:40
Alignment explanation
Indices: 90945775--90945978 Score: 238
Period size: 40 Copynumber: 5.1 Consensus size: 40
90945765 CGGAATTTAA
** *
90945775 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* *
90945815 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
90945855 CCGGATTTAGTAACTCGCACCAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
90945894 CCGGA-ATTAGTAACTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
90945934 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
90945974 CCGGA
1 CCGGA
90945979 CATCATTCGA
Statistics
Matches: 141, Mismatches: 16, Indels: 14
0.82 0.09 0.08
Matches are distributed among these distances:
38 2 0.01
39 33 0.23
40 94 0.67
41 12 0.09
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:90951750 original size:40 final size:40
Alignment explanation
Indices: 90951677--90951921 Score: 343
Period size: 40 Copynumber: 6.2 Consensus size: 40
90951667 CGGATGATAA
* * * *
90951677 CGAAGGCATTTGTGCTAGTGACTA-ATTCTGGGCTAAGTCT
1 CGAAGGCATTTGTGCGAGTTACTATA-TCCGGGCTAAGTCC
*
90951717 CGAAGGCATTTGTGTGAGTTACTATATCCGGGCTAAGTCC
1 CGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCC
*
90951757 TGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCC
1 CGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCC
*
90951797 CGAAGGCATTTGTGCGAGTTACTATATCCAGGCTAAGTCC
1 CGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCC
* *
90951837 CGAAGGCATTGGTGCGAGCTACTATATCCGGGCTAAGTCC
1 CGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCC
* * *
90951877 CGAAGGCATTTGAGCGAG-TAGCTATATCC-GGTTAAATCC
1 CGAAGGCATTTGTGCGAGTTA-CTATATCCGGGCTAAGTCC
90951916 CGAAGG
1 CGAAGG
90951922 TACTTGGTTT
Statistics
Matches: 187, Mismatches: 16, Indels: 5
0.90 0.08 0.02
Matches are distributed among these distances:
39 16 0.09
40 170 0.91
41 1 0.01
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.27
Consensus pattern (40 bp):
CGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCC
Found at i:90959640 original size:33 final size:34
Alignment explanation
Indices: 90959563--90959643 Score: 94
Period size: 33 Copynumber: 2.4 Consensus size: 34
90959553 TATGGGCTAT
*
90959563 ACTGTTATCTGAATAAGGGGCTAAGGCCCAGTTT
1 ACTGTTATCTGAATAAGGGGCTAAGGCCCAGTTC
* * **
90959597 AATGTAATCTGAA-AA-GGGCTCTGGCCCAGTATC
1 ACTGTTATCTGAATAAGGGGCTAAGGCCCAGT-TC
90959630 ACTGTTATCTGAAT
1 ACTGTTATCTGAAT
90959644 GGGCTTAGGC
Statistics
Matches: 38, Mismatches: 7, Indels: 4
0.78 0.14 0.08
Matches are distributed among these distances:
32 13 0.34
33 14 0.37
34 11 0.29
ACGTcount: A:0.28, C:0.19, G:0.23, T:0.30
Consensus pattern (34 bp):
ACTGTTATCTGAATAAGGGGCTAAGGCCCAGTTC
Found at i:90959648 original size:32 final size:30
Alignment explanation
Indices: 90959563--90959656 Score: 71
Period size: 32 Copynumber: 2.9 Consensus size: 30
90959553 TATGGGCTAT
* *
90959563 ACTGTTATCTGAATAAGGGGCTAAGGCCCAGTTT
1 ACTGTTATCTGAAT---GGGCT-TGGCCCAGTTC
* * *
90959597 AATGTAATCTGAAAAGGGCTCTGGCCCAGTATC
1 ACTGTTATCTG-AATGGGCT-TGGCCCAGT-TC
90959630 ACTGTTATCTGAATGGGCTTAGGCCCA
1 ACTGTTATCTGAATGGGCTT-GGCCCA
90959657 ATGGGCTTGA
Statistics
Matches: 48, Mismatches: 9, Indels: 8
0.74 0.14 0.12
Matches are distributed among these distances:
31 1 0.02
32 26 0.54
33 10 0.21
34 9 0.19
35 2 0.04
ACGTcount: A:0.27, C:0.20, G:0.26, T:0.28
Consensus pattern (30 bp):
ACTGTTATCTGAATGGGCTTGGCCCAGTTC
Found at i:90968106 original size:39 final size:40
Alignment explanation
Indices: 90968012--90968233 Score: 287
Period size: 39 Copynumber: 5.7 Consensus size: 40
90968002 GCTACTCGTT
*
90968012 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
90968052 CAAATGCCTTC-GGACTTAGCCCGG-TTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
*
90968090 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* *
90968130 CCAATGCCTTCGGG-CTTAGCCCGGAATTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * * * *
90968169 -AAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
90968209 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
90968234 CATCATTCGA
Statistics
Matches: 162, Mismatches: 13, Indels: 14
0.86 0.07 0.07
Matches are distributed among these distances:
37 2 0.01
38 32 0.20
39 64 0.40
40 58 0.36
41 6 0.04
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:90968233 original size:40 final size:40
Alignment explanation
Indices: 90967993--90968233 Score: 282
Period size: 40 Copynumber: 6.1 Consensus size: 40
90967983 CGGAATTTAA
** *
90967993 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
*
90968033 CCGGTTATAGTAACTCGCACAAATGCCTTC-GGACTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
90968072 CCGG-TTTAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
90968111 CCGGATTTAGTAACTCGCACCAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
90968150 CCGGA-ATTAGTAACTCGCA-AAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
90968189 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
90968229 CCGGA
1 CCGGA
90968234 CATCATTCGA
Statistics
Matches: 176, Mismatches: 15, Indels: 20
0.83 0.07 0.09
Matches are distributed among these distances:
37 2 0.01
38 33 0.19
39 62 0.35
40 73 0.41
41 6 0.03
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:90976221 original size:119 final size:120
Alignment explanation
Indices: 90976045--90976267 Score: 319
Period size: 119 Copynumber: 1.9 Consensus size: 120
90976035 TACTCGTTCA
* *
90976045 AATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGTT
1 AATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGAT
*
90976110 ATAGTAAC-TCGCACAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACC
66 ATAGTAACTTAGCACAAA-GCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACC
* *
90976165 AATGCCTTCGGG-CTTAGCCCGGA-ATTAGTAACTCGCACAAATGCCTTC-GGATCTTAGTCCGG
1 AATGCCTTCGGGACATAGCCCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGCCCGG
* * *
90976227 ATATGGTCACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
64 ATATAGTAACTTAGCACAAAGCCTTCGGGACTTAACCCGGA
90976268 CATCATTCGA
Statistics
Matches: 92, Mismatches: 8, Indels: 7
0.86 0.07 0.07
Matches are distributed among these distances:
118 4 0.04
119 68 0.74
120 20 0.22
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (120 bp):
AATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGAT
ATAGTAACTTAGCACAAAGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACC
Found at i:90976267 original size:40 final size:40
Alignment explanation
Indices: 90976024--90976267 Score: 309
Period size: 40 Copynumber: 6.1 Consensus size: 40
90976014 CGGAATTTAA
** *
90976024 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
*
90976064 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
90976104 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
90976144 CCGGATTTAGTAACTCGCACCAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
90976183 CCGGA-ATTAGTAACTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
90976223 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
90976263 CCGGA
1 CCGGA
90976268 CATCATTCGA
Statistics
Matches: 181, Mismatches: 16, Indels: 14
0.86 0.08 0.07
Matches are distributed among these distances:
38 2 0.01
39 33 0.18
40 134 0.74
41 12 0.07
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:90980713 original size:17 final size:16
Alignment explanation
Indices: 90980665--90980715 Score: 68
Period size: 17 Copynumber: 3.1 Consensus size: 16
90980655 TAACATCAAA
90980665 AAAT-ATTTTTAAAAT
1 AAATAATTTTTAAAAT
*
90980680 AAATAATTTTAATAAAT
1 AAATAATTTTTA-AAAT
90980697 AAATAATTTTTTAAAAT
1 AAATAA-TTTTTAAAAT
90980714 AA
1 AA
90980716 TTATTTAAGA
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
15 4 0.13
16 6 0.19
17 16 0.52
18 5 0.16
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (16 bp):
AAATAATTTTTAAAAT
Found at i:90982997 original size:3 final size:3
Alignment explanation
Indices: 90982989--90983036 Score: 96
Period size: 3 Copynumber: 16.0 Consensus size: 3
90982979 GAAACTCCTG
90982989 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
90983037 CTCCTTAAAT
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 45 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TAT
Found at i:90992566 original size:9 final size:9
Alignment explanation
Indices: 90992552--90992580 Score: 58
Period size: 9 Copynumber: 3.2 Consensus size: 9
90992542 TTATTACTTT
90992552 AAAATTTTA
1 AAAATTTTA
90992561 AAAATTTTA
1 AAAATTTTA
90992570 AAAATTTTA
1 AAAATTTTA
90992579 AA
1 AA
90992581 TAAAAAAATT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (9 bp):
AAAATTTTA
Found at i:90993942 original size:2 final size:2
Alignment explanation
Indices: 90993935--90993977 Score: 86
Period size: 2 Copynumber: 21.5 Consensus size: 2
90993925 GCCATTAGTT
90993935 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
90993977 T
1 T
90993978 TTTTGTAATT
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 41 1.00
ACGTcount: A:0.00, C:0.49, G:0.00, T:0.51
Consensus pattern (2 bp):
TC
Found at i:90997007 original size:59 final size:58
Alignment explanation
Indices: 90996939--90997354 Score: 391
Period size: 59 Copynumber: 7.2 Consensus size: 58
90996929 AGCCACAAAA
* ** *
90996939 GCTTTCCTTTCAAATATTAGCCACAAAGGCATCATTTTCATTCAGTACTCACCAAAAAG
1 GCTTTCCTTT-AAAGATTTTCCACAAAGGCATCATTTTCATTCAGTACTCACCATAAAG
* * * *
90996998 GCTTTCCTTTTAAAGATTTTCCACAAAGGAATCATTTTCATTCAATACTCGCCACAAAG
1 GCTTTCC-TTTAAAGATTTTCCACAAAGGCATCATTTTCATTCAGTACTCACCATAAAG
* * * ***
90997057 GTTTTCTTTTAAATGATTTTCCACAAAAGGCATCATTTTCATTTAGTACTTGTCATAAAG
1 GCTTTCCTTTAAA-GATTTTCCAC-AAAGGCATCATTTTCATTCAGTACTCACCATAAAG
* * * *
90997117 GCTTTCCTTTAAGAGATTTGCCACAAAGCCATCCTTTTCATTCAGAACTCACCATAAAG
1 GCTTTCCTTTAA-AGATTTTCCACAAAGGCATCATTTTCATTCAGTACTCACCATAAAG
* *
90997176 GCTTT-CTATTCAAAGATTTTTCACAAAGGCATCATTTTCATTCAGTTCT-AGCCATAAAG
1 GCTTTCCT-TT-AAAGATTTTCCACAAAGGCATCATTTTCATTCAGTACTCA-CCATAAAG
* * * * **
90997235 GCTTTCCTTTAAGAGATTTTCCATAAAGGCATCCTTTTCATTCAGTGCTCGCCGCAAA-
1 GCTTTCCTTTAA-AGATTTTCCACAAAGGCATCATTTTCATTCAGTACTCACCATAAAG
* * * * * * *
90997293 G--TT-C---AAAGATTTTCTACAAAGGAATCCTTTTCTTTCAATACTCGCCACAAAG
1 GCTTTCCTTTAAAGATTTTCCACAAAGGCATCATTTTCATTCAGTACTCACCATAAAG
90997345 GCTTTCCTTT
1 GCTTTCCTTT
90997355 TTATAGGTTT
Statistics
Matches: 295, Mismatches: 45, Indels: 35
0.79 0.12 0.09
Matches are distributed among these distances:
51 38 0.13
52 3 0.01
54 2 0.01
55 2 0.01
56 2 0.01
58 12 0.04
59 180 0.61
60 55 0.19
61 1 0.00
ACGTcount: A:0.30, C:0.23, G:0.12, T:0.35
Consensus pattern (58 bp):
GCTTTCCTTTAAAGATTTTCCACAAAGGCATCATTTTCATTCAGTACTCACCATAAAG
Done.