Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A06
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 115140250
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2234201 characters in sequence are not A, C, G, or T
File 267 of 345
Found at i:90997141 original size:119 final size:118
Alignment explanation
Indices: 90996930--90997387 Score: 447
Period size: 118 Copynumber: 3.9 Consensus size: 118
90996920 AACAGAGGTA
* * **
90996930 GCCACAAAAGCTTTCCT-TTCAAATATTAGCCACAAAGGCATCATTTTCATTCAGTACTCA-CCA
1 GCCACAAAGGCTTT-CTATTCAAAGATTTTCCACAAAGGCATCATTTTCATTCAGTACT-AGCCA
* * *
90996993 AAAAGGCTTTCCTTTTAA-AGATTTTCCACAAAGGAATCATTTTCATTCAATACTC
64 TAAAGGCTTTCC-TTTAAGAGATTTTCCACAAAGGCATCCTTTTCATTCAATACTC
* * * * *
90997048 GCCACAAAGGTTTTCT-TTTAAATGATTTTCCACAAAAGGCATCATTTTCATTTAGTACTTGTCA
1 GCCACAAAGGCTTTCTATTCAAA-GATTTTCCAC-AAAGGCATCATTTTCATTCAGTACTAGCCA
* *
90997112 TAAAGGCTTTCCTTTAAGAGATTTGCCACAAAGCCATCCTTTTCATTCAGA-ACTC
64 TAAAGGCTTTCCTTTAAGAGATTTTCCACAAAGGCATCCTTTTCATTCA-ATACTC
* * * *
90997167 ACCATAAAGGCTTTCTATTCAAAGATTTTTCACAAAGGCATCATTTTCATTCAGTTCTAGCCATA
1 GCCACAAAGGCTTTCTATTCAAAGATTTTCCACAAAGGCATCATTTTCATTCAGTACTAGCCATA
* * *
90997232 AAGGCTTTCCTTTAAGAGATTTTCCATAAAGGCATCCTTTTCATTCAGTGCTC
66 AAGGCTTTCCTTTAAGAGATTTTCCACAAAGGCATCCTTTTCATTCAATACTC
* * * * * * * *
90997285 GCCGCAAA-G-------TTCAAAGATTTTCTACAAAGGAATCCTTTTCTTTCAATACTCGCCACA
1 GCCACAAAGGCTTTCTATTCAAAGATTTTCCACAAAGGCATCATTTTCATTCAGTACTAGCCATA
* * * * *
90997342 AAGGCTTTCCTTTTTATAGGTTTGCCACAAAGGCTTTCCTTTTCAT
66 AAGGCTTTCC-TTTAAGAGATTTTCCACAAAGGC-ATCCTTTTCAT
90997388 AAGTTTACCA
Statistics
Matches: 285, Mismatches: 46, Indels: 24
0.80 0.13 0.07
Matches are distributed among these distances:
110 49 0.17
111 18 0.06
112 10 0.04
117 8 0.03
118 104 0.36
119 90 0.32
120 6 0.02
ACGTcount: A:0.30, C:0.23, G:0.12, T:0.35
Consensus pattern (118 bp):
GCCACAAAGGCTTTCTATTCAAAGATTTTCCACAAAGGCATCATTTTCATTCAGTACTAGCCATA
AAGGCTTTCCTTTAAGAGATTTTCCACAAAGGCATCCTTTTCATTCAATACTC
Found at i:90997255 original size:178 final size:177
Alignment explanation
Indices: 90996939--90997276 Score: 466
Period size: 178 Copynumber: 1.9 Consensus size: 177
90996929 AGCCACAAAA
* * *
90996939 GCTTTCCTTTCAAATATTAGCCACAAAGGCATCATTTTCATTCAGTACTCACCAAAAAGGCTTTC
1 GCTTTCCTTTCAAAGATTAGCCACAAAGCCATCATTTTCATTCAGAACTCACCAAAAAGGCTTTC
* * * *
90997004 CTTTTAAAGATTTTCCACAAAGGAATCATTTTCATTCAATACTCGCCACAAAGGTTTTCTTTTAA
66 CTTTCAAAGATTTTCCACAAAGGAATCATTTTCATTCAATACTAGCCACAAAGGCTTTCCTTTAA
90997069 ATGATTTTCCACAAAAGGCATCATTTTCATTTAGTACTTGTCATAAAG
131 ATGATTTTCCA-AAAAGGCATCATTTTCATTTAGTACTTGTCATAAAG
* * *
90997117 GCTTTCCTTT-AAGAGATTTGCCACAAAGCCATCCTTTTCATTCAGAACTCACCATAAAGGCTTT
1 GCTTTCCTTTCAA-AGATTAGCCACAAAGCCATCATTTTCATTCAGAACTCACCAAAAAGGCTTT
* * * * *
90997181 -CTATTCAAAGATTTTTCACAAAGGCATCATTTTCATTCAGTTCTAGCCATAAAGGCTTTCCTTT
65 CCT-TTCAAAGATTTTCCACAAAGGAATCATTTTCATTCAATACTAGCCACAAAGGCTTTCCTTT
* *
90997245 AAGA-GATTTTCCATAAAGGCATCCTTTTCATT
129 AA-ATGATTTTCCAAAAAGGCATCATTTTCATT
90997277 CAGTGCTCGC
Statistics
Matches: 140, Mismatches: 17, Indels: 7
0.85 0.10 0.04
Matches are distributed among these distances:
177 21 0.15
178 118 0.84
179 1 0.01
ACGTcount: A:0.30, C:0.22, G:0.11, T:0.36
Consensus pattern (177 bp):
GCTTTCCTTTCAAAGATTAGCCACAAAGCCATCATTTTCATTCAGAACTCACCAAAAAGGCTTTC
CTTTCAAAGATTTTCCACAAAGGAATCATTTTCATTCAATACTAGCCACAAAGGCTTTCCTTTAA
ATGATTTTCCAAAAAGGCATCATTTTCATTTAGTACTTGTCATAAAG
Found at i:90997324 original size:51 final size:51
Alignment explanation
Indices: 90997248--90997344 Score: 131
Period size: 51 Copynumber: 1.9 Consensus size: 51
90997238 TTCCTTTAAG
* * * * *
90997248 AGATTTTCCATAAAGGCATCCTTTTCATTCAGTGCTCGCCGCAAAGTTCAA
1 AGATTTTCCACAAAGGAATCCTTTTCATTCAATACTCGCCACAAAGTTCAA
* *
90997299 AGATTTTCTACAAAGGAATCCTTTTCTTTCAATACTCGCCACAAAG
1 AGATTTTCCACAAAGGAATCCTTTTCATTCAATACTCGCCACAAAG
90997345 GCTTTCCTTT
Statistics
Matches: 39, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
51 39 1.00
ACGTcount: A:0.30, C:0.25, G:0.13, T:0.32
Consensus pattern (51 bp):
AGATTTTCCACAAAGGAATCCTTTTCATTCAATACTCGCCACAAAGTTCAA
Found at i:90997372 original size:29 final size:29
Alignment explanation
Indices: 90997336--90997414 Score: 113
Period size: 29 Copynumber: 2.7 Consensus size: 29
90997326 TTCAATACTC
* *
90997336 GCCACAAAGGCTTTCCTTTTTATAGGTTT
1 GCCACAAAGGCTTTCCTTTTCATAAGTTT
90997365 GCCACAAAGGCTTTCCTTTTCATAAGTTT
1 GCCACAAAGGCTTTCCTTTTCATAAGTTT
* * *
90997394 ACCAAAAAGGTTTTCCTTTTC
1 GCCACAAAGGCTTTCCTTTTC
90997415 TGACGTGTTT
Statistics
Matches: 45, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
29 45 1.00
ACGTcount: A:0.24, C:0.23, G:0.14, T:0.39
Consensus pattern (29 bp):
GCCACAAAGGCTTTCCTTTTCATAAGTTT
Found at i:91004405 original size:47 final size:48
Alignment explanation
Indices: 91004328--91004597 Score: 215
Period size: 47 Copynumber: 5.8 Consensus size: 48
91004318 TGGATAAGGT
*
91004328 GTCGATGTCATGTCCCAGACATGGTCTTACACTAGCTTATATCTC-AA
1 GTCGATGTCATGTCCCAGACATGGTCTTACACTAGCTTACATCTCGAA
* * * * * *
91004375 GTTGATGCCATGTCCCAAACATGGTCTTACATTAAC-TATCATCTCGTA
1 GTCGATGTCATGTCCCAGACATGGTCTTACACTAGCTTA-CATCTCGAA
* * * * *
91004423 GTCGATAT-ATGTCCTAGACAT-GTCTTACACTGGCTTACGTCTCGAG
1 GTCGATGTCATGTCCCAGACATGGTCTTACACTAGCTTACATCTCGAA
* *
91004469 GTCGATG-CATGTCCCAAACAT-GTCTTACACTAGCTCT-CGTCTC-AA
1 GTCGATGTCATGTCCCAGACATGGTCTTACACTAGCT-TACATCTCGAA
* * * * *
91004514 TGCCAATGTCATGTCCCAGACATGGTCTTACACTGGCTCT-CATAAT--ATG
1 -GTCGATGTCATGTCCCAGACATGGTCTTACACTAGCT-TACAT-CTCGA-A
*
91004563 GCCGATG-CATGTCCCAGACAT-GTCTTACACTAGCT
1 GTCGATGTCATGTCCCAGACATGGTCTTACACTAGCT
91004598 CACAAACAAA
Statistics
Matches: 181, Mismatches: 32, Indels: 21
0.77 0.14 0.09
Matches are distributed among these distances:
45 1 0.01
46 72 0.40
47 77 0.43
48 30 0.17
49 1 0.01
ACGTcount: A:0.24, C:0.27, G:0.18, T:0.31
Consensus pattern (48 bp):
GTCGATGTCATGTCCCAGACATGGTCTTACACTAGCTTACATCTCGAA
Found at i:91006843 original size:12 final size:12
Alignment explanation
Indices: 91006826--91006871 Score: 58
Period size: 12 Copynumber: 3.7 Consensus size: 12
91006816 ACCACACGGG
91006826 TGTGTGGTCACC
1 TGTGTGGTCACC
91006838 TGTGTGGT-AGGCC
1 TGTGTGGTCA--CC
91006851 GTGTGTGGTCACC
1 -TGTGTGGTCACC
91006864 TGTGTGGT
1 TGTGTGGT
91006872 AGGTCGTATG
Statistics
Matches: 30, Mismatches: 0, Indels: 8
0.79 0.00 0.21
Matches are distributed among these distances:
11 1 0.03
12 16 0.53
13 4 0.13
14 8 0.27
15 1 0.03
ACGTcount: A:0.07, C:0.17, G:0.41, T:0.35
Consensus pattern (12 bp):
TGTGTGGTCACC
Found at i:91006854 original size:26 final size:26
Alignment explanation
Indices: 91006825--91006874 Score: 100
Period size: 26 Copynumber: 1.9 Consensus size: 26
91006815 CACCACACGG
91006825 GTGTGTGGTCACCTGTGTGGTAGGCC
1 GTGTGTGGTCACCTGTGTGGTAGGCC
91006851 GTGTGTGGTCACCTGTGTGGTAGG
1 GTGTGTGGTCACCTGTGTGGTAGG
91006875 TCGTATGATG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.08, C:0.16, G:0.44, T:0.32
Consensus pattern (26 bp):
GTGTGTGGTCACCTGTGTGGTAGGCC
Found at i:91012557 original size:42 final size:40
Alignment explanation
Indices: 91012471--91012565 Score: 102
Period size: 42 Copynumber: 2.3 Consensus size: 40
91012461 TGTATCTGAT
* * *
91012471 TGGGCTAAGGCCCTAATATATTTCTAAATCTGTATCTGAT
1 TGGGCTAAGGCCCTAATATATTTCTAAATCTGCATCCGAG
* *
91012511 TGGGCTAAGGCCCTATAATATATATT-TGATTCTGCATCCGAG
1 TGGGCTAAGGCCC--TAATATAT-TTCTAAATCTGCATCCGAG
*
91012553 TGGGCTAAAGCCC
1 TGGGCTAAGGCCC
91012566 AAATTGTTTC
Statistics
Matches: 46, Mismatches: 6, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
40 13 0.28
42 31 0.67
43 2 0.04
ACGTcount: A:0.26, C:0.20, G:0.21, T:0.33
Consensus pattern (40 bp):
TGGGCTAAGGCCCTAATATATTTCTAAATCTGCATCCGAG
Found at i:91018247 original size:42 final size:42
Alignment explanation
Indices: 91018187--91018386 Score: 258
Period size: 42 Copynumber: 4.6 Consensus size: 42
91018177 GAGTGCCAAA
* * * *
91018187 GCCATATCCTAGACATGGTCTTACA-TGGATCTACATATCGAT
1 GCCATGTCCCAGACATGGTCTTACACTAGACCT-CATATCGAT
* * * *
91018229 GCCATATCCCAGATATGGTCTTACACAAAATCTCATATCAGTATCGAT
1 GCCATGTCCCAGACATGGTCTTACACTAGA-C-C---TCA-TATCGAT
91018277 GCCATGTCCCAGACATGGTCTTACACTAGACCTCATATCGAT
1 GCCATGTCCCAGACATGGTCTTACACTAGACCTCATATCGAT
91018319 GCCATGTCCCAGACATGGTCTTACACTAGACCTCATATCGAT
1 GCCATGTCCCAGACATGGTCTTACACTAGACCTCATATCGAT
91018361 GCCATGTCCCAGACATGGTCTTACAC
1 GCCATGTCCCAGACATGGTCTTACAC
91018387 AAAATCAAAA
Statistics
Matches: 141, Mismatches: 10, Indels: 14
0.85 0.06 0.08
Matches are distributed among these distances:
42 98 0.70
43 4 0.03
45 1 0.01
46 1 0.01
47 3 0.02
48 34 0.24
ACGTcount: A:0.28, C:0.28, G:0.16, T:0.28
Consensus pattern (42 bp):
GCCATGTCCCAGACATGGTCTTACACTAGACCTCATATCGAT
Found at i:91018278 original size:48 final size:46
Alignment explanation
Indices: 91018222--91018530 Score: 233
Period size: 48 Copynumber: 6.7 Consensus size: 46
91018212 TGGATCTACA
* * *
91018222 TATCGATGCCATATCCCAGATATGGTCTTACACAAAATCTCATATCAG
1 TATCGATGCCATGTCCCAGACATGGTCTTACACAAGATC-CA-ATCAG
*
91018270 TATCGATGCCATGTCCCAGACATGGTCTTACACTAGA-CC--TCA-
1 TATCGATGCCATGTCCCAGACATGGTCTTACACAAGATCCAATCAG
*
91018312 TATCGATGCCATGTCCCAGACATGGTCTTACACTAGA-CC--TCA-
1 TATCGATGCCATGTCCCAGACATGGTCTTACACAAGATCCAATCAG
* * * *
91018354 TATCGATGCCATGTCCCAGACATGGTCTTACACAAAATCAAAAAGCGG
1 TATCGATGCCATGTCCCAGACATGGTCTTACACAAGATC--CAATCAG
* * * * * ** *
91018402 T-GCAGAAGCCATATCCCTGATATGGTCTTACACGGGATCACATACCAG
1 TATC-GATGCCATGTCCCAGACATGGTCTTACACAAGATC-CA-ATCAG
* * * * *
91018450 TGTCGATGCCATGTCCCAGACATGGTCTTATACTAGCA-CTCACAGCAA
1 TATCGATGCCATGTCCCAGACATGGTCTTACACAAG-ATC-CA-ATCAG
** *
91018498 TGCCTATGCCATGTCCCAGACATGGTCTTACAC
1 TATCGATGCCATGTCCCAGACATGGTCTTACAC
91018531 TGGCTCTTAT
Statistics
Matches: 216, Mismatches: 35, Indels: 20
0.80 0.13 0.07
Matches are distributed among these distances:
42 77 0.36
43 4 0.02
46 1 0.00
47 5 0.02
48 127 0.59
49 2 0.01
ACGTcount: A:0.29, C:0.28, G:0.17, T:0.25
Consensus pattern (46 bp):
TATCGATGCCATGTCCCAGACATGGTCTTACACAAGATCCAATCAG
Found at i:91018413 original size:132 final size:137
Alignment explanation
Indices: 91018187--91018530 Score: 351
Period size: 132 Copynumber: 2.5 Consensus size: 137
91018177 GAGTGCCAAA
* * * * * *
91018187 GCCATATCCTAGACATGGTCTTACA-TGGATCTACATATCGATGCCATATCCCAGATATGGTCTT
1 GCCATGTCCCAGACATGGTCTTACACTAGACCT-CATATCGATGCCATGTCCCAGACATGGTCTT
** * * * * * *
91018251 ACACAAAATCTCATATCAGTATCGATGCCATGTCCCAGACATGGTCTTACACTAGA-C-C-T-CA
65 ACACAAAATCAAAAAGCAGTAGCGAAGCCATATCCCAGACATGGTCTTACACGAGATCACATACA
91018312 -TATCGAT
130 GTATCGAT
91018319 GCCATGTCCCAGACATGGTCTTACACTAGACCTCATATCGATGCCATGTCCCAGACATGGTCTTA
1 GCCATGTCCCAGACATGGTCTTACACTAGACCTCATATCGATGCCATGTCCCAGACATGGTCTTA
* * * *
91018384 CACAAAATCAAAAAGCGGT-GCAGAAGCCATATCCCTGATATGGTCTTACACGGGATCACATACC
66 CACAAAATCAAAAAGCAGTAGC-GAAGCCATATCCCAGACATGGTCTTACACGAGATCACATA-C
*
91018448 AGTGTCGAT
129 AGTATCGAT
* * * *
91018457 GCCATGTCCCAGACATGGTCTTATACTAGCACTCACAGCAATGCCTATGCCATGTCCCAGACATG
1 GCCATGTCCCAGACATGGTCTTACACTAG-AC-CTCA--TAT--CGATGCCATGTCCCAGACATG
91018522 GTCTTACAC
60 GTCTTACAC
91018531 TGGCTCTTAT
Statistics
Matches: 175, Mismatches: 23, Indels: 16
0.82 0.11 0.07
Matches are distributed among these distances:
131 1 0.01
132 94 0.54
133 6 0.03
134 1 0.01
135 1 0.01
137 2 0.01
138 34 0.19
139 2 0.01
140 3 0.02
142 2 0.01
144 29 0.17
ACGTcount: A:0.29, C:0.28, G:0.17, T:0.26
Consensus pattern (137 bp):
GCCATGTCCCAGACATGGTCTTACACTAGACCTCATATCGATGCCATGTCCCAGACATGGTCTTA
CACAAAATCAAAAAGCAGTAGCGAAGCCATATCCCAGACATGGTCTTACACGAGATCACATACAG
TATCGAT
Found at i:91027817 original size:48 final size:47
Alignment explanation
Indices: 91027745--91028008 Score: 239
Period size: 49 Copynumber: 5.6 Consensus size: 47
91027735 AGATGCCGAC
* *
91027745 GCCATGTCCCAGACATGATTTTACACTGGCTAGCACATCAAAGTCGAT
1 GCCATGTCCCAGACA-GGTCTTACACTGGCTAGCACATCAAAGTCGAT
*
91027793 GCCATGTCCCAGACATGGTCTTACACTGGCTAGCACATCAAATTCGAT
1 GCCATGTCCCAGACA-GGTCTTACACTGGCTAGCACATCAAAGTCGAT
* * ** * * * *
91027841 GCCATGTCCCAGACAGGTTTTACACTGACTTTCATATATCGAGGTTGAT
1 GCCATGTCCCAGACAGGTCTTACACTGGCTAGC--ACATCAAAGTCGAT
* * ** **
91027890 GCCGTGTCCCAGATAGGTCTTACACTGGCTCTCATCTATCAGTGTCGAT
1 GCCATGTCCCAGACAGGTCTTACACTGGCTAGCA-C-ATCAAAGTCGAT
** *
91027939 GCCATGTCCCAGACAGGTCTTACACTAAC-A-CACATC-AAG-CTAAT
1 GCCATGTCCCAGACAGGTCTTACACTGGCTAGCACATCAAAGTC-GAT
* *
91027983 GCCATGTTCCAGACAGGCCTTACACT
1 GCCATGTCCCAGACAGGTCTTACACT
91028009 AGCTTGTATA
Statistics
Matches: 179, Mismatches: 32, Indels: 14
0.80 0.14 0.06
Matches are distributed among these distances:
43 1 0.01
44 27 0.15
45 3 0.02
46 1 0.01
47 17 0.09
48 60 0.34
49 70 0.39
ACGTcount: A:0.26, C:0.28, G:0.19, T:0.27
Consensus pattern (47 bp):
GCCATGTCCCAGACAGGTCTTACACTGGCTAGCACATCAAAGTCGAT
Found at i:91034471 original size:48 final size:47
Alignment explanation
Indices: 91034400--91034714 Score: 240
Period size: 48 Copynumber: 6.6 Consensus size: 47
91034390 AGATGCTGAC
*
91034400 GCCATGTCCCAGACATGATCTTACACTGGCTAGCACATCAAAGTCGAT
1 GCCATGTCCCAGACA-GGTCTTACACTGGCTAGCACATCAAAGTCGAT
*
91034448 GCCATGTCCCAGATATGGTCTTACACTGGCTAGCACATCAAAGTCGAT
1 GCCATGTCCCAGACA-GGTCTTACACTGGCTAGCACATCAAAGTCGAT
* * ** * *
91034496 GCCATGTCCCAGATAGGTCTTACACTGACTTTCATAT-ATAGAGGCTGAT
1 GCCATGTCCCAGACAGGTCTTACACTGGCTAGCACATCA-A-AGTC-GAT
* * ** * *
91034545 GCCGTGTCCCAGACAGGTCTTACACTAGCTCTCATCTATCGATGTCGAT
1 GCCATGTCCCAGACAGGTCTTACACTGGCTAGCA-C-ATCAAAGTCGAT
* * * * * * *
91034594 GCCATGTGCCAGACAGGTCTTACACTAGCTTGTATATCTCGAAGCCGAT
1 GCCATGTCCCAGACAGGTCTTACACTGGCTAGCACA--TCAAAGTCGAT
* * * ** * * *
91034643 G-CATGTCCCAAACATGTCTTACACTAGCTCTCGTC-TCAATGCCGAT
1 GCCATGTCCCAGACAGGTCTTACACTGGCTAGC-ACATCAAAGTCGAT
* *
91034689 GTCATGTCCCAGACATGTCTTACACT
1 GCCATGTCCCAGACAGGTCTTACACT
91034715 AGCACACATA
Statistics
Matches: 222, Mismatches: 35, Indels: 21
0.80 0.13 0.08
Matches are distributed among these distances:
46 11 0.05
47 43 0.19
48 89 0.40
49 74 0.33
50 2 0.01
51 3 0.01
ACGTcount: A:0.25, C:0.28, G:0.19, T:0.27
Consensus pattern (47 bp):
GCCATGTCCCAGACAGGTCTTACACTGGCTAGCACATCAAAGTCGAT
Found at i:91034606 original size:98 final size:97
Alignment explanation
Indices: 91034400--91034717 Score: 308
Period size: 95 Copynumber: 3.3 Consensus size: 97
91034390 AGATGCTGAC
* * * * * * * *
91034400 GCCATGTCCCAGACATGATCTTACACTGGCTAGCACAT-CA-AAGTCGATGCCATGTCCCAGATA
1 GCCATGTCCCAGACA-GGTCTTACACTAGCTTGTATATATAGAAGCCGATGCCATGTCCCAGACA
* ** *
91034463 TGGTCTTACACTGGCTAGCA-CATCAAAGTCGAT
65 -GGTCTTACACTAGCTCTCATCATCAATGTCGAT
* * * *
91034496 GCCATGTCCCAGATAGGTCTTACACT-GACTT-TCATATATAGAGGCTGATGCCGTGTCCCAGAC
1 GCCATGTCCCAGACAGGTCTTACACTAG-CTTGT-ATATATAGAAGCCGATGCCATGTCCCAGAC
*
91034559 AGGTCTTACACTAGCTCTCATCTATCGATGTCGAT
64 AGGTCTTACACTAGCTCTCATC-ATCAATGTCGAT
* * * * *
91034594 GCCATGTGCCAGACAGGTCTTACACTAGCTTGTATATCTCGAAGCCGATG-CATGTCCCAAACAT
1 GCCATGTCCCAGACAGGTCTTACACTAGCTTGTATATATAGAAGCCGATGCCATGTCCCAGACAG
* *
91034658 GTCTTACACTAGCTCTCGTC-TCAATGCCGAT
66 GTCTTACACTAGCTCTCATCATCAATGTCGAT
* *
91034689 GTCATGTCCCAGACATGTCTTACACTAGC
1 GCCATGTCCCAGACAGGTCTTACACTAGC
91034718 ACACATATCA
Statistics
Matches: 183, Mismatches: 31, Indels: 17
0.79 0.13 0.07
Matches are distributed among these distances:
94 1 0.01
95 50 0.27
96 31 0.17
97 49 0.27
98 50 0.27
99 2 0.01
ACGTcount: A:0.25, C:0.28, G:0.19, T:0.27
Consensus pattern (97 bp):
GCCATGTCCCAGACAGGTCTTACACTAGCTTGTATATATAGAAGCCGATGCCATGTCCCAGACAG
GTCTTACACTAGCTCTCATCATCAATGTCGAT
Found at i:91034726 original size:95 final size:96
Alignment explanation
Indices: 91034444--91034726 Score: 250
Period size: 97 Copynumber: 2.9 Consensus size: 96
91034434 ACATCAAAGT
* * * ** * *
91034444 CGATGCCATGTCCCAGATATGGTCTTACACTGGCTAGCA-CATCAAAGTCGATGCCATGTCCCAG
1 CGATG-CATGTCCCAAACA-GGTCTTACACTAGCTCTCATCATCAATGCCGATGCCATGTCCCAG
* * * * *
91034508 ATAGGTCTTACACT-G-ACTTTCATATATAGAGGC
64 ACAGGTCTTACACTAGCAC--ACATATCTCGAAGC
* * * * * *
91034541 TGATGCCGTGTCCCAGACAGGTCTTACACTAGCTCTCATCTATCGATGTCGATGCCATGTGCCAG
1 CGATG-CATGTCCCAAACAGGTCTTACACTAGCTCTCATC-ATCAATGCCGATGCCATGTCCCAG
****
91034606 ACAGGTCTTACACTAGCTTGTATATCTCGAAGC
64 ACAGGTCTTACACTAGCACACATATCTCGAAGC
* * *
91034639 CGATGCATGTCCCAAACATGTCTTACACTAGCTCTCGTC-TCAATGCCGATGTCATGTCCCAGAC
1 CGATGCATGTCCCAAACAGGTCTTACACTAGCTCTCATCATCAATGCCGATGCCATGTCCCAGAC
*
91034703 ATGTCTTACACTAGCACACATATC
66 AGGTCTTACACTAGCACACATATC
91034727 ACACAAATGT
Statistics
Matches: 151, Mismatches: 31, Indels: 10
0.79 0.16 0.05
Matches are distributed among these distances:
95 40 0.26
96 16 0.11
97 47 0.31
98 47 0.31
99 1 0.01
ACGTcount: A:0.25, C:0.28, G:0.19, T:0.28
Consensus pattern (96 bp):
CGATGCATGTCCCAAACAGGTCTTACACTAGCTCTCATCATCAATGCCGATGCCATGTCCCAGAC
AGGTCTTACACTAGCACACATATCTCGAAGC
Found at i:91038051 original size:40 final size:40
Alignment explanation
Indices: 91038000--91038221 Score: 250
Period size: 40 Copynumber: 5.5 Consensus size: 40
91037990 TGCACAAGGA
* * * *
91038000 TTCGGGTCTTAGCCCGGATGTGGTCACTAGCATAAATGCC
1 TTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGCC
* *
91038040 TTCGGCACTTAGCCCGGATATAGTCGCTAGCACAAATGCC
1 TTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGCC
** * *
91038080 TTCGGGTTTTAGCCCGGATATAATCGCTAGCACAAATGCC
1 TTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGCC
* * *
91038120 TTCGGGTCTTAGCCCGGATATAG-CAACTCGCACGAATGCC
1 TTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATGCC
* * * *
91038160 TTC-GGATCTTAGTCCGGTTATAGTCACCTAGCACAAAAGCA
1 TTCGGGA-CTTAGCCCGGATATAGTCA-CTAGCACAAATGCC
91038201 TTCGGGACTTAGCCCGGATAT
1 TTCGGGACTTAGCCCGGATAT
91038222 CATTCGAATA
Statistics
Matches: 153, Mismatches: 24, Indels: 9
0.82 0.13 0.05
Matches are distributed among these distances:
39 3 0.02
40 121 0.79
41 26 0.17
42 3 0.02
ACGTcount: A:0.24, C:0.27, G:0.24, T:0.26
Consensus pattern (40 bp):
TTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGCC
Found at i:91038095 original size:80 final size:80
Alignment explanation
Indices: 91037962--91038221 Score: 276
Period size: 80 Copynumber: 3.3 Consensus size: 80
91037952 CTCAAGAAAT
* * * * ** * *
91037962 CTTCGGGATTTAG-CCGGATATAACTACTTGCAC-AA-GGATTCGGGTCTTAGCCCGGATGTGGT
1 CTTCGGGACTTAGCCCGGATATAGCAACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATAGT
*
91038024 CACTAGCATAAATGC
66 CACTAGCACAAATGC
* * * *
91038039 CTTCGGCACTTAGCCCGGATATAGTC-GCTAGCACAAATGCCTTCGGGTTTTAGCCCGGATATAA
1 CTTCGGGACTTAGCCCGGATATAG-CAACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATAG
*
91038103 TCGCTAGCACAAATGC
65 TCACTAGCACAAATGC
* * * * * *
91038119 CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACGAATGCCTTCGGATCTTAGTCCGGTTATAGT
1 CTTCGGGACTTAGCCCGGATATAGCAACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATAGT
*
91038184 CACCTAGCACAAAAGC
66 CA-CTAGCACAAATGC
*
91038200 ATTCGGGACTTAGCCCGGATAT
1 CTTCGGGACTTAGCCCGGATAT
91038222 CATTCGAATA
Statistics
Matches: 150, Mismatches: 27, Indels: 8
0.81 0.15 0.04
Matches are distributed among these distances:
77 11 0.07
78 15 0.10
79 4 0.03
80 88 0.59
81 32 0.21
ACGTcount: A:0.25, C:0.26, G:0.24, T:0.26
Consensus pattern (80 bp):
CTTCGGGACTTAGCCCGGATATAGCAACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATAGT
CACTAGCACAAATGC
Found at i:91038132 original size:120 final size:121
Alignment explanation
Indices: 91038000--91038221 Score: 297
Period size: 120 Copynumber: 1.8 Consensus size: 121
91037990 TGCACAAGGA
* * *
91038000 TTCGGGTCTTAGCCCGGATGTGGTC-ACTAGCATAAATGCCTTCGGCA-CTTAGCCCGGATATAG
1 TTCGGGTCTTAGCCCGGATATAG-CAACTAGCACAAATGCCTTCGG-ATCTTAGCCCGGATATAG
* * * **
91038063 TC-GCTAGCACAAATGCCTTCGGGTTTTAGCCCGGATATAATCGCTAGCACAAATGCC
64 TCACCTAGCACAAAAGCATTCGGGACTTAGCCCGGATATAATCGCTAGCACAAATGCC
* * * *
91038120 TTCGGGTCTTAGCCCGGATATAGCAACTCGCACGAATGCCTTCGGATCTTAGTCCGGTTATAGTC
1 TTCGGGTCTTAGCCCGGATATAGCAACTAGCACAAATGCCTTCGGATCTTAGCCCGGATATAGTC
91038185 ACCTAGCACAAAAGCATTCGGGACTTAGCCCGGATAT
66 ACCTAGCACAAAAGCATTCGGGACTTAGCCCGGATAT
91038222 CATTCGAATA
Statistics
Matches: 87, Mismatches: 12, Indels: 5
0.84 0.12 0.05
Matches are distributed among these distances:
119 2 0.02
120 54 0.62
121 31 0.36
ACGTcount: A:0.24, C:0.27, G:0.24, T:0.26
Consensus pattern (121 bp):
TTCGGGTCTTAGCCCGGATATAGCAACTAGCACAAATGCCTTCGGATCTTAGCCCGGATATAGTC
ACCTAGCACAAAAGCATTCGGGACTTAGCCCGGATATAATCGCTAGCACAAATGCC
Found at i:91041714 original size:90 final size:90
Alignment explanation
Indices: 91041567--91041732 Score: 219
Period size: 90 Copynumber: 1.8 Consensus size: 90
91041557 TACCAAAGCC
* *
91041567 ATGTCCCAGACATGGTCTTTCATGGATCCACATATCGATGCCATAACAAGAATATGGTCTTACAC
1 ATGTCCCAGACATGGTCTTACATGGATCCACATATCGATGCCATAACAAGAACATGGTCTTACAC
*
91041632 AAAATCTCATATTGGTACCGATGCA
66 AAAATCACATATTGGTACCGATGCA
* * ** * *
91041657 ATGTCCCAGACATGGTCTTACACTGGA-CCTCATATCGGTGCCATGTCCCAG-ACATGGTCTTAT
1 ATGTCCCAGACATGGTCTTACA-TGGATCCACATATCGATGCCAT-AACAAGAACATGGTCTTAC
91041720 ACAAAATCACATA
64 ACAAAATCACATA
91041733 ACGATGCTGA
Statistics
Matches: 65, Mismatches: 9, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
90 58 0.89
91 7 0.11
ACGTcount: A:0.31, C:0.25, G:0.17, T:0.27
Consensus pattern (90 bp):
ATGTCCCAGACATGGTCTTACATGGATCCACATATCGATGCCATAACAAGAACATGGTCTTACAC
AAAATCACATATTGGTACCGATGCA
Found at i:91052260 original size:10 final size:10
Alignment explanation
Indices: 91052245--91052274 Score: 60
Period size: 10 Copynumber: 3.0 Consensus size: 10
91052235 ATCTCCCTGT
91052245 ACAAAGATGA
1 ACAAAGATGA
91052255 ACAAAGATGA
1 ACAAAGATGA
91052265 ACAAAGATGA
1 ACAAAGATGA
91052275 CAATGGCAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 20 1.00
ACGTcount: A:0.60, C:0.10, G:0.20, T:0.10
Consensus pattern (10 bp):
ACAAAGATGA
Found at i:91057487 original size:40 final size:40
Alignment explanation
Indices: 91057413--91057615 Score: 342
Period size: 40 Copynumber: 5.2 Consensus size: 40
91057403 AACCCAAGTA
* * *
91057413 CCTTCGGGATTTAG-CCGGATATAGCAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATG
91057452 CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATG
91057492 CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATG
91057532 CCTTC-GGACTTAGCCCGGATATAGTAACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATG
*
91057571 CCTTCGGGACTTAG-CCGGATATAGTCA-TAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATG
91057609 CCTTCGG
1 CCTTCGG
91057616 ATCTTAGTCC
Statistics
Matches: 158, Mismatches: 4, Indels: 5
0.95 0.02 0.03
Matches are distributed among these distances:
38 18 0.11
39 64 0.41
40 76 0.48
ACGTcount: A:0.29, C:0.26, G:0.23, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATG
Found at i:91057547 original size:79 final size:78
Alignment explanation
Indices: 91057413--91057627 Score: 351
Period size: 79 Copynumber: 2.7 Consensus size: 78
91057403 AACCCAAGTA
* * *
91057413 CCTTCGGGATTTAGCCGGATATAGCAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAGT
1 CCTTCGGGACTTAGCCGGATATAGTAACTAGCACAAATGCCTTC-GGACTTAGCCCGGATATAGT
91057478 AACTAGCACAAATG
65 AACTAGCACAAATG
91057492 CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATGCCTTCGGACTTAGCCCGGATATAGT
1 CCTTCGGGACTTAG-CCGGATATAGTAACTAGCACAAATGCCTTCGGACTTAGCCCGGATATAGT
91057557 AACTAGCACAAATG
65 AACTAGCACAAATG
* *
91057571 CCTTCGGGACTTAGCCGGATATAGTCA-TAGCACAAATGCCTTCGGATCTTAGTCCGG
1 CCTTCGGGACTTAGCCGGATATAGTAACTAGCACAAATGCCTTCGGA-CTTAGCCCGG
91057628 TTATCATCCG
Statistics
Matches: 129, Mismatches: 5, Indels: 5
0.93 0.04 0.04
Matches are distributed among these distances:
77 19 0.15
78 21 0.16
79 61 0.47
80 28 0.22
ACGTcount: A:0.28, C:0.26, G:0.23, T:0.24
Consensus pattern (78 bp):
CCTTCGGGACTTAGCCGGATATAGTAACTAGCACAAATGCCTTCGGACTTAGCCCGGATATAGTA
ACTAGCACAAATG
Found at i:91060109 original size:40 final size:40
Alignment explanation
Indices: 91060064--91060286 Score: 268
Period size: 40 Copynumber: 5.5 Consensus size: 40
91060054 TGCACAAGGA
* * *
91060064 CTTCGGGTCTTAGCCCGGATGTGGTCACTAGCATAAATGC
1 CTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAATGC
* **
91060104 CTTCGGGACTTAGCCCGGATATAGTCGGTAGCACAAATGC
1 CTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAATGC
* * *
91060144 CTTCGGGTTTTAGCCCGGATATAATCGCTAGCACAAATGC
1 CTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAATGC
* *
91060184 CTTCGGGTCTTAGCCCGGATATAG-CAACTCGCACGAATGC
1 CTTCGGGTCTTAGCCCGGATATAGTC-ACTAGCACAAATGC
* * * *
91060224 CTTCGGATCTTAGTCCGGTTATAGTCACCTAGCACAAAAGC
1 CTTCGGGTCTTAGCCCGGATATAGTCA-CTAGCACAAATGC
* *
91060265 ATTCGGGACTTAGCCCGGATAT
1 CTTCGGGTCTTAGCCCGGATAT
91060287 CATTCGAATA
Statistics
Matches: 154, Mismatches: 26, Indels: 5
0.83 0.14 0.03
Matches are distributed among these distances:
39 1 0.01
40 125 0.81
41 28 0.18
ACGTcount: A:0.24, C:0.26, G:0.25, T:0.26
Consensus pattern (40 bp):
CTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAATGC
Found at i:91060159 original size:80 final size:80
Alignment explanation
Indices: 91060026--91060286 Score: 285
Period size: 80 Copynumber: 3.3 Consensus size: 80
91060016 CTCAAGAAAT
* * * * * * * *
91060026 CTTCGGGATTTAG-CCGGATATAACTACTTGCAC-AAGGACTTCGGGTCTTAGCCCGGATGTGGT
1 CTTCGGGACTTAGCCCGGATATAGCAACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATAGT
*
91060089 CACTAGCATAAATGC
66 CACTAGCACAAATGC
** * *
91060104 CTTCGGGACTTAGCCCGGATATAGTC-GGTAGCACAAATGCCTTCGGGTTTTAGCCCGGATATAA
1 CTTCGGGACTTAGCCCGGATATAG-CAACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATAG
*
91060168 TCGCTAGCACAAATGC
65 TCACTAGCACAAATGC
* * * * * *
91060184 CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACGAATGCCTTCGGATCTTAGTCCGGTTATAGT
1 CTTCGGGACTTAGCCCGGATATAGCAACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATAGT
*
91060249 CACCTAGCACAAAAGC
66 CA-CTAGCACAAATGC
*
91060265 ATTCGGGACTTAGCCCGGATAT
1 CTTCGGGACTTAGCCCGGATAT
91060287 CATTCGAATA
Statistics
Matches: 151, Mismatches: 27, Indels: 7
0.82 0.15 0.04
Matches are distributed among these distances:
78 12 0.08
79 15 0.10
80 92 0.61
81 32 0.21
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.26
Consensus pattern (80 bp):
CTTCGGGACTTAGCCCGGATATAGCAACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATAGT
CACTAGCACAAATGC
Found at i:91060247 original size:120 final size:120
Alignment explanation
Indices: 91060026--91060286 Score: 298
Period size: 120 Copynumber: 2.2 Consensus size: 120
91060016 CTCAAGAAAT
* * *
91060026 CTTCGGGATTTAG-CCGGATATAACTACTTGCACAAGGACTTCGGGTCTTAGCCCGGATGTGGTC
1 CTTCGGGATTTAGCCCGGATATAACTACTAGCACAAGGACTTCGGGTCTTAGCCCGGATATAGTC
* ** *
91060090 ACTAGCATAAATGCCTTCGGGACTTAGCCCGGATATAGTC-GGTAGCACAAATGC
66 ACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTCACCTAGCACAAAAGC
* * * *
91060144 CTTCGGGTTTTAGCCCGGATATAA-TCGCTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATAG
1 CTTCGGGATTTAGCCCGGATATAACT-ACTAGCAC-AAGGACTTCGGGTCTTAGCCCGGATATAG
* * * *
91060208 -CAACTCGCACGAATGCCTTC-GGATCTTAGTCCGGTTATAGTCACCTAGCACAAAAGC
64 TC-ACTAGCACAAATGCCTTCGGGA-CTTAGCCCGGATATAGTCACCTAGCACAAAAGC
* *
91060265 ATTCGGGACTTAGCCCGGATAT
1 CTTCGGGATTTAGCCCGGATAT
91060287 CATTCGAATA
Statistics
Matches: 119, Mismatches: 18, Indels: 9
0.82 0.12 0.06
Matches are distributed among these distances:
118 13 0.11
119 20 0.17
120 56 0.47
121 30 0.25
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.26
Consensus pattern (120 bp):
CTTCGGGATTTAGCCCGGATATAACTACTAGCACAAGGACTTCGGGTCTTAGCCCGGATATAGTC
ACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTCACCTAGCACAAAAGC
Found at i:91061222 original size:40 final size:39
Alignment explanation
Indices: 91061057--91061271 Score: 208
Period size: 39 Copynumber: 5.4 Consensus size: 39
91061047 CCCAAGTACC
* * *
91061057 TCGGATTTAG-CCGGATATAGCAACTCGCACAAATGCCT
1 TCGGACTTAGTCCGGATATAGTAACTAGCACAAATGCCT
*
91061095 TCGGACTTAGCCCGGATATAGTAACT-GCACAAATG-CT
1 TCGGACTTAGTCCGGATATAGTAACTAGCACAAATGCCT
*
91061132 TCGCGGACTTTAGCTCTGGAATATAGTAACTAGCACAAATGCCT
1 T--CGGAC-TTAG-TCCGG-ATATAGTAACTAGCACAAATGCCT
*
91061176 TCGGACTTAGTCCGGTTTATAAGTAACT-GCAC-AATGCCT
1 TCGGACTTAGTCCGG-ATAT-AGTAACTAGCACAAATGCCT
* * *
91061215 TCGGGACTATGGGCCGGATATAGTAAATAAGCACAAATGCCT
1 TC-GGACT-TAGTCCGGATATAGTAACT-AGCACAAATGCCT
91061257 TC-GATCTTAGTCCGG
1 TCGGA-CTTAGTCCGG
91061272 TTATCATCCG
Statistics
Matches: 149, Mismatches: 13, Indels: 28
0.78 0.07 0.15
Matches are distributed among these distances:
37 3 0.02
38 18 0.12
39 34 0.23
40 31 0.21
41 26 0.17
42 25 0.17
43 9 0.06
44 3 0.02
ACGTcount: A:0.28, C:0.23, G:0.22, T:0.26
Consensus pattern (39 bp):
TCGGACTTAGTCCGGATATAGTAACTAGCACAAATGCCT
Found at i:91061248 original size:81 final size:79
Alignment explanation
Indices: 91061065--91061273 Score: 255
Period size: 81 Copynumber: 2.6 Consensus size: 79
91061055 CCTCGGATTT
* * * *
91061065 AGCCGGATATAGCAACTCGCACAAATGCCTTCGGACTTAGCCCGG-ATATAGTAACTGCACAAAT
1 AGCCGGATATAGTAACTAGCACAAATGCCTTCGGACTTAGTCCGGTTTATAGTAACTGCACAAAT
*
91061129 GCTTCGCGGACTTT
66 GCTTCGCGGACTTG
91061143 AGCTCTGGAATATAGTAACTAGCACAAATGCCTTCGGACTTAGTCCGGTTTATAAGTAACTGCAC
1 AGC-C-GG-ATATAGTAACTAGCACAAATGCCTTCGGACTTAGTCCGGTTTAT-AGTAACTGCAC
91061208 -AATGCCTTCG-GGACTATG
62 AAATG-CTTCGCGGACT-TG
* *
91061226 GGCCGGATATAGTAAATAAGCACAAATGCCTTC-GATCTTAGTCCGGTT
1 AGCCGGATATAGTAACT-AGCACAAATGCCTTCGGA-CTTAGTCCGGTT
91061274 ATCATCCGAA
Statistics
Matches: 115, Mismatches: 7, Indels: 15
0.84 0.05 0.11
Matches are distributed among these distances:
78 3 0.03
79 1 0.01
80 14 0.12
81 65 0.57
82 13 0.11
83 19 0.17
ACGTcount: A:0.29, C:0.23, G:0.22, T:0.26
Consensus pattern (79 bp):
AGCCGGATATAGTAACTAGCACAAATGCCTTCGGACTTAGTCCGGTTTATAGTAACTGCACAAAT
GCTTCGCGGACTTG
Found at i:91072233 original size:40 final size:40
Alignment explanation
Indices: 91072184--91072386 Score: 252
Period size: 40 Copynumber: 5.1 Consensus size: 40
91072174 CGGAATTCAA
* * *
91072184 CCGGATATAGCT-ACTCGCTCGAATGCCTTCAGGACATAGC
1 CCGGATATAG-TAACTCGCACGAATGCCTTCGGGACTTAGC
* * *
91072224 CCGGTTATAGTAACTCGAACAAATGCCTTCGGGACTTAGC
1 CCGGATATAGTAACTCGCACGAATGCCTTCGGGACTTAGC
*
91072264 CCGGATATAATAACTCGCACGAATGCCTTCGGGACTTAGC
1 CCGGATATAGTAACTCGCACGAATGCCTTCGGGACTTAGC
*
91072304 CCGGATATAATAACTCGCAC-AATTGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACGAA-TGCCTTCGGGACTTAGC
* * *
91072343 CCGGA-ATTAGTCACTAGCACAAATGCCTTCGGGACTTAGC
1 CCGGATA-TAGTAACTCGCACGAATGCCTTCGGGACTTAGC
91072383 CCGG
1 CCGG
91072387 TTATCATCCG
Statistics
Matches: 145, Mismatches: 13, Indels: 10
0.86 0.08 0.06
Matches are distributed among these distances:
38 1 0.01
39 34 0.23
40 110 0.76
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.23
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACGAATGCCTTCGGGACTTAGC
Found at i:91075863 original size:16 final size:16
Alignment explanation
Indices: 91075815--91075865 Score: 57
Period size: 16 Copynumber: 3.2 Consensus size: 16
91075805 GTGGTCCTAC
* *
91075815 TTTTGACTTTTCAGCA
1 TTTTGACATTTCAGGA
**
91075831 TTTTGACATTTTTGGA
1 TTTTGACATTTCAGGA
*
91075847 TTTTGACATTTCGGGA
1 TTTTGACATTTCAGGA
91075863 TTT
1 TTT
91075866 AGGGATCTAG
Statistics
Matches: 29, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
16 29 1.00
ACGTcount: A:0.18, C:0.12, G:0.18, T:0.53
Consensus pattern (16 bp):
TTTTGACATTTCAGGA
Found at i:91075992 original size:25 final size:25
Alignment explanation
Indices: 91075961--91076011 Score: 93
Period size: 25 Copynumber: 2.0 Consensus size: 25
91075951 AGCCTTACTA
*
91075961 ATTTCCTTAACCGATATCAAGGTTT
1 ATTTCCTTAACAGATATCAAGGTTT
91075986 ATTTCCTTAACAGATATCAAGGTTT
1 ATTTCCTTAACAGATATCAAGGTTT
91076011 A
1 A
91076012 CACCTCCTTG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.31, C:0.18, G:0.12, T:0.39
Consensus pattern (25 bp):
ATTTCCTTAACAGATATCAAGGTTT
Found at i:91076946 original size:21 final size:21
Alignment explanation
Indices: 91076922--91076965 Score: 79
Period size: 21 Copynumber: 2.1 Consensus size: 21
91076912 ACACCAATAC
*
91076922 TAGCCGTCCATGTAACAAAAT
1 TAGCCGTCCATGTAAAAAAAT
91076943 TAGCCGTCCATGTAAAAAAAT
1 TAGCCGTCCATGTAAAAAAAT
91076964 TA
1 TA
91076966 ATATCCATCA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.41, C:0.20, G:0.14, T:0.25
Consensus pattern (21 bp):
TAGCCGTCCATGTAAAAAAAT
Found at i:91085198 original size:40 final size:40
Alignment explanation
Indices: 91085143--91085409 Score: 480
Period size: 40 Copynumber: 6.7 Consensus size: 40
91085133 AACATTGGAT
91085143 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
1 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
91085183 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
1 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
91085223 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
1 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
*
91085263 CATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
1 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
* * *
91085303 TATATCCGGGCTATGACCCGAAGGCAATTATGCGGGATGA
1 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
91085343 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
1 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
* *
91085383 TATGTCCGGGTTAAGACCCGAAGGCAA
1 TATATCCGGGCTAAGACCCGAAGGCAA
91085410 ATGTGTTTGC
Statistics
Matches: 217, Mismatches: 10, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
40 217 1.00
ACGTcount: A:0.30, C:0.21, G:0.28, T:0.22
Consensus pattern (40 bp):
TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
Found at i:91089822 original size:29 final size:29
Alignment explanation
Indices: 91089790--91089908 Score: 125
Period size: 29 Copynumber: 4.1 Consensus size: 29
91089780 GTGAGCATGA
* *
91089790 ATATGCATGTGATTTGGGCCTAATGGGCC
1 ATATGAATGTGAATTGGGCCTAATGGGCC
* * *
91089819 ATATGAATATGAAGTGGGCCTGATGGGCC
1 ATATGAATGTGAATTGGGCCTAATGGGCC
* *
91089848 ATATGAATGTGAATTGGGCCTGATGGGTC
1 ATATGAATGTGAATTGGGCCTAATGGGCC
* * *
91089877 ATATAAATGAG-ATTGGGCC-AAGTAGGCC
1 ATATGAATGTGAATTGGGCCTAA-TGGGCC
91089905 ATAT
1 ATAT
91089909 ACATGTGTGT
Statistics
Matches: 76, Mismatches: 13, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
27 1 0.01
28 16 0.21
29 59 0.78
ACGTcount: A:0.28, C:0.13, G:0.31, T:0.28
Consensus pattern (29 bp):
ATATGAATGTGAATTGGGCCTAATGGGCC
Found at i:91097552 original size:29 final size:28
Alignment explanation
Indices: 91097471--91097569 Score: 117
Period size: 29 Copynumber: 3.5 Consensus size: 28
91097461 ATGAATATAC
* * *
91097471 ATGTGATTTGGCCTAATGGGCCACATGA
1 ATGTGATTGGGCCTGATGGGCCATATGA
* *
91097499 ATATGAATTAGGCCTGATGGGCCATATGA
1 ATGTG-ATTGGGCCTGATGGGCCATATGA
*
91097528 ATGTGAATTGGGCCTGATGGGCCATATAA
1 ATGTG-ATTGGGCCTGATGGGCCATATGA
*
91097557 ATGAGATTGGGCC
1 ATGTGATTGGGCC
91097570 AAGTGGGCTA
Statistics
Matches: 62, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
28 12 0.19
29 50 0.81
ACGTcount: A:0.27, C:0.15, G:0.30, T:0.27
Consensus pattern (28 bp):
ATGTGATTGGGCCTGATGGGCCATATGA
Found at i:91100755 original size:3 final size:3
Alignment explanation
Indices: 91100733--91100778 Score: 58
Period size: 3 Copynumber: 15.3 Consensus size: 3
91100723 TATATAAATA
* *
91100733 AAT AAT AAC AAT AGAT -AT AAT AAT AAT AAT AAT AAT AAC AAT AAT
1 AAT AAT AAT AAT A-AT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
91100778 A
1 A
91100779 CGAGTACAAG
Statistics
Matches: 37, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
2 2 0.05
3 33 0.89
4 2 0.05
ACGTcount: A:0.65, C:0.04, G:0.02, T:0.28
Consensus pattern (3 bp):
AAT
Found at i:91100757 original size:21 final size:23
Alignment explanation
Indices: 91100724--91100766 Score: 63
Period size: 21 Copynumber: 2.0 Consensus size: 23
91100714 GTAGTAAAAT
91100724 ATATAAATAAATAATAACAATAG
1 ATATAAATAAATAATAACAATAG
*
91100747 ATAT-AAT-AATAATAATAATA
1 ATATAAATAAATAATAACAATA
91100767 ATAACAATAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
21 12 0.63
22 3 0.16
23 4 0.21
ACGTcount: A:0.65, C:0.02, G:0.02, T:0.30
Consensus pattern (23 bp):
ATATAAATAAATAATAACAATAG
Found at i:91113889 original size:21 final size:19
Alignment explanation
Indices: 91113849--91113893 Score: 54
Period size: 21 Copynumber: 2.2 Consensus size: 19
91113839 GAGTGCGTTT
91113849 TATCGATAGAAGTCCAAGTTG
1 TATCGATAGAA--CCAAGTTG
91113870 TATCGATAGAACCTAGAGTTG
1 TATCGATAGAACC-A-AGTTG
91113891 TAT
1 TAT
91113894 TGGTAGAACT
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
19 2 0.09
20 1 0.05
21 19 0.86
ACGTcount: A:0.33, C:0.13, G:0.22, T:0.31
Consensus pattern (19 bp):
TATCGATAGAACCAAGTTG
Found at i:91119237 original size:47 final size:47
Alignment explanation
Indices: 91119175--91119415 Score: 356
Period size: 47 Copynumber: 5.1 Consensus size: 47
91119165 TTAGGATTTT
* ** * *
91119175 ATGTAATGAATGTGAATGTGTATATATGAGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
91119222 ATGTGATGAACGTGAAAATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
91119269 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
91119316 ATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * * * *
91119363 ATGTGGTGAATATGAACATGCATATATGTGGTAAAGCCGAATGGCTA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
91119410 ATGTGA
1 ATGTGA
91119416 AATATGTATG
Statistics
Matches: 176, Mismatches: 18, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
47 176 1.00
ACGTcount: A:0.34, C:0.11, G:0.29, T:0.26
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
Found at i:91119275 original size:22 final size:22
Alignment explanation
Indices: 91119204--91119322 Score: 66
Period size: 22 Copynumber: 5.1 Consensus size: 22
91119194 GTATATATGA
91119204 GATAAGGCCGAATGGCCAATGT
1 GATAAGGCCGAATGGCCAATGT
** *
91119226 GATGAACGTG-AAAAT-GCATATATGT
1 GAT-AA-G-GCCGAATGGC-CA-ATGT
91119251 GATAAGGCCGAATGGCCAATGT
1 GATAAGGCCGAATGGCCAATGT
* * *
91119273 GATGAATG-TGAACAT-GCATATATGT
1 GAT-AAGGCCG-A-ATGGC-CA-ATGT
91119298 GATAAGGCCGAATGGCCAATGT
1 GATAAGGCCGAATGGCCAATGT
91119320 GAT
1 GAT
91119323 GAATGTGAGC
Statistics
Matches: 71, Mismatches: 12, Indels: 28
0.64 0.11 0.25
Matches are distributed among these distances:
22 19 0.27
23 18 0.25
24 18 0.25
25 16 0.23
ACGTcount: A:0.34, C:0.13, G:0.29, T:0.24
Consensus pattern (22 bp):
GATAAGGCCGAATGGCCAATGT
Found at i:91119371 original size:25 final size:25
Alignment explanation
Indices: 91119296--91119371 Score: 63
Period size: 23 Copynumber: 3.2 Consensus size: 25
91119286 ATGCATATAT
91119296 GTGATAAGGCCGAATGGCCAATGTG
1 GTGATAAGGCCGAATGGCCAATGTG
* * * *
91119321 ATGA-ATGTG-AGCAT-G-CATATGT-
1 GTGATAAG-GCCGAATGGCCA-ATGTG
91119343 GTGATAAGGCCGAATGGCCAATGTG
1 GTGATAAGGCCGAATGGCCAATGTG
91119368 GTGA
1 GTGA
91119372 ATATGAACAT
Statistics
Matches: 36, Mismatches: 8, Indels: 14
0.62 0.14 0.24
Matches are distributed among these distances:
22 6 0.17
23 10 0.28
24 10 0.28
25 10 0.28
ACGTcount: A:0.29, C:0.13, G:0.34, T:0.24
Consensus pattern (25 bp):
GTGATAAGGCCGAATGGCCAATGTG
Found at i:91119544 original size:98 final size:96
Alignment explanation
Indices: 91119386--91119569 Score: 316
Period size: 98 Copynumber: 1.9 Consensus size: 96
91119376 GAACATGCAT
*
91119386 ATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGA
1 ATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATGTATATGTGGTAAAGCCGA
91119451 ATGGCTAATGTGAAATATGTATGAGATATGC
66 ATGGCTAATGTGAAATATGTATGAGATATGC
91119482 ATATGTGGTAAAGCCGAATGG-TCAATGTGAAATATATATATGAGATATGTATATGTGGTAAAGC
1 ATATGTGGTAAAGCCGAATGGCT-AATGTG-AA-ATATATATGAGATATGTATATGTGGTAAAGC
*
91119546 CGAATGGCTAGTGTGAAATATGTA
63 CGAATGGCTAATGTGAAATATGTA
91119570 GGCGATGTGC
Statistics
Matches: 83, Mismatches: 2, Indels: 4
0.93 0.02 0.04
Matches are distributed among these distances:
95 1 0.01
96 27 0.33
97 2 0.02
98 53 0.64
ACGTcount: A:0.36, C:0.07, G:0.27, T:0.30
Consensus pattern (96 bp):
ATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATGTATATGTGGTAAAGCCGA
ATGGCTAATGTGAAATATGTATGAGATATGC
Found at i:91119585 original size:50 final size:48
Alignment explanation
Indices: 91119385--91119569 Score: 309
Period size: 48 Copynumber: 3.8 Consensus size: 48
91119375 TGAACATGCA
91119385 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
91119433 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
* *
91119481 CATATGTGGTAAAGCCGAATGG-TCAATGTGAAATATATATATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCT-AATGTG-AA-ATATGTATGAGATATG
*
91119531 TATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTA
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTA
91119570 GGCGATGTGC
Statistics
Matches: 128, Mismatches: 5, Indels: 8
0.91 0.04 0.06
Matches are distributed among these distances:
47 1 0.01
48 81 0.63
49 4 0.03
50 41 0.32
51 1 0.01
ACGTcount: A:0.36, C:0.07, G:0.26, T:0.31
Consensus pattern (48 bp):
TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
Found at i:91119823 original size:37 final size:37
Alignment explanation
Indices: 91119715--91119823 Score: 164
Period size: 37 Copynumber: 2.9 Consensus size: 37
91119705 GGAAATATAT
** *
91119715 TTCGGGTAAGACTTGATGACTACGTGTGGAGATTATG
1 TTCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
*
91119752 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TTCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
* *
91119789 TTCGGGTAAGACCCGATAACTTCGTGTGGAGATTT
1 TTCGGGTAAGACCCGATGACTACGTGTGGAGATTT
91119824 CGTCTGAGCT
Statistics
Matches: 65, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 65 1.00
ACGTcount: A:0.23, C:0.16, G:0.31, T:0.30
Consensus pattern (37 bp):
TTCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
Found at i:91125442 original size:12 final size:12
Alignment explanation
Indices: 91125425--91125467 Score: 50
Period size: 12 Copynumber: 3.5 Consensus size: 12
91125415 ACAGATTTGG
91125425 CACGGCCTAGCA
1 CACGGCCTAGCA
*
91125437 CACGGCCTGGCA
1 CACGGCCTAGCA
* *
91125449 CATGGGCTAGTCA
1 CACGGCCTAG-CA
91125462 CACGGC
1 CACGGC
91125468 ATGTGGTTGG
Statistics
Matches: 24, Mismatches: 6, Indels: 1
0.77 0.19 0.03
Matches are distributed among these distances:
12 18 0.75
13 6 0.25
ACGTcount: A:0.21, C:0.37, G:0.30, T:0.12
Consensus pattern (12 bp):
CACGGCCTAGCA
Found at i:91131548 original size:27 final size:27
Alignment explanation
Indices: 91131518--91131712 Score: 196
Period size: 27 Copynumber: 7.2 Consensus size: 27
91131508 CCGTACATTC
* *
91131518 AGTGCTATATAATCAACTCGCACACTT
1 AGTGCTACATAGTCAACTCGCACACTT
* *
91131545 AGTGCCACATAATCAAACTCGCACACTT
1 AGTGCTACATAGTC-AACTCGCACACTT
91131573 AGTGCTACATAGTCAACTCGCACACTT
1 AGTGCTACATAGTCAACTCGCACACTT
** * *
91131600 AGTGCCGCATGGTCAATTCGCACACTT
1 AGTGCTACATAGTCAACTCGCACACTT
* * ** *
91131627 AGTGCATTC-T-TTCATTTCCCACACTT
1 AGTGC-TACATAGTCAACTCGCACACTT
* * *
91131653 AGTGCAACATGGTCAAATCGCACACTT
1 AGTGCTACATAGTCAACTCGCACACTT
* *
91131680 AGTGCTACATAGCCAAATCGCACACTT
1 AGTGCTACATAGTCAACTCGCACACTT
91131707 AGTGCT
1 AGTGCT
91131713 GTACAATTTA
Statistics
Matches: 142, Mismatches: 22, Indels: 8
0.83 0.13 0.05
Matches are distributed among these distances:
25 1 0.01
26 19 0.13
27 96 0.68
28 26 0.18
ACGTcount: A:0.29, C:0.29, G:0.15, T:0.27
Consensus pattern (27 bp):
AGTGCTACATAGTCAACTCGCACACTT
Found at i:91139593 original size:27 final size:27
Alignment explanation
Indices: 91139563--91139767 Score: 205
Period size: 27 Copynumber: 7.6 Consensus size: 27
91139553 ATATTAAGTC
* *
91139563 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
*
91139590 CGCACACTTAGTGCCACATAATCAAACT
1 CGCACACTTAGTGCTACATAATC-AACT
*
91139618 CGCACACTTAGTGCTACATAGTCAACT
1 CGCACACTTAGTGCTACATAATCAACT
** ** *
91139645 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
** **
91139672 CGCACACTTAGTGC-ATCATTTTCATTT
1 CGCACACTTAGTGCTA-CATAATCAACT
* ** *
91139699 CGCACACTTAGTGCAACATGGTCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
** *
91139726 CGCACACTTAGTGCTACATAGCCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
91139753 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
91139768 GTACAATTTA
Statistics
Matches: 155, Mismatches: 20, Indels: 6
0.86 0.11 0.03
Matches are distributed among these distances:
27 129 0.83
28 26 0.17
ACGTcount: A:0.29, C:0.29, G:0.15, T:0.26
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:91139702 original size:54 final size:54
Alignment explanation
Indices: 91139563--91139766 Score: 257
Period size: 54 Copynumber: 3.8 Consensus size: 54
91139553 ATATTAAGTC
* * * **
91139563 CGCACACTCAGTGCTATATAATCAACTCGCACACTTAGTGCCACATAATCAAACT
1 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCCACATGGTCAAA-T
* *
91139618 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCCACATGGTCAAAT
** ** *
91139672 CGCACACTTAGTGC-ATCATTTTCATTTCGCACACTTAGTGCAACATGGTCAAAT
1 CGCACACTTAGTGCTA-CATAGTCAACTCGCACACTTAGTGCCACATGGTCAAAT
* *
91139726 CGCACACTTAGTGCTACATAGCCAAATCGCACACTTAGTGC
1 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGC
91139767 TGTACAATTT
Statistics
Matches: 128, Mismatches: 19, Indels: 5
0.84 0.12 0.03
Matches are distributed among these distances:
53 1 0.01
54 80 0.62
55 47 0.37
ACGTcount: A:0.29, C:0.29, G:0.15, T:0.26
Consensus pattern (54 bp):
CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCCACATGGTCAAAT
Found at i:91139732 original size:81 final size:81
Alignment explanation
Indices: 91139617--91139766 Score: 228
Period size: 81 Copynumber: 1.9 Consensus size: 81
91139607 ATAATCAAAC
* * * * * *
91139617 TCGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCCGCATGGTCAATTCGCACACTTA
1 TCGCACACTTAGTGCAACATAGTCAAATCGCACACTTAGTGCCACATAGCCAAATCGCACACTTA
91139682 GTGCATCATTTTCATT
66 GTGCATCATTTTCATT
* *
91139698 TCGCACACTTAGTGCAACATGGTCAAATCGCACACTTAGTGCTACATAGCCAAATCGCACACTTA
1 TCGCACACTTAGTGCAACATAGTCAAATCGCACACTTAGTGCCACATAGCCAAATCGCACACTTA
91139763 GTGC
66 GTGC
91139767 TGTACAATTT
Statistics
Matches: 61, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
81 61 1.00
ACGTcount: A:0.27, C:0.29, G:0.17, T:0.27
Consensus pattern (81 bp):
TCGCACACTTAGTGCAACATAGTCAAATCGCACACTTAGTGCCACATAGCCAAATCGCACACTTA
GTGCATCATTTTCATT
Found at i:91141843 original size:43 final size:43
Alignment explanation
Indices: 91141782--91142006 Score: 241
Period size: 43 Copynumber: 5.4 Consensus size: 43
91141772 TACTTCGGTA
* * *
91141782 TTATCTGATGATGCACTATGTGTTCTAGTATGTTGCTTCAGTT
1 TTATCCGATGATGCACTATGTGTGCCAGTATGTTGCTTCAGTT
*
91141825 TTATCCGATGATGCACTATGTGTGCCAGTATGTTGCTTCAGTA
1 TTATCCGATGATGCACTATGTGTGCCAGTATGTTGCTTCAGTT
* * * * *
91141868 TTATTCGATGATGTACTATATGTGCCAGTACGTTGCTTC-GATA
1 TTATCCGATGATGCACTATGTGTGCCAGTATGTTGCTTCAG-TT
*
91141911 TTAT---ATGATG-A-T-TGTGTG-CAGTATGTTGCTTCGGTT
1 TTATCCGATGATGCACTATGTGTGCCAGTATGTTGCTTCAGTT
* * * * *
91141947 TTATCCAATGATGCACTTTGTGTACCAGTATGTTGTTTCAATT
1 TTATCCGATGATGCACTATGTGTGCCAGTATGTTGCTTCAGTT
*
91141990 TTATCCAATGATGCACT
1 TTATCCGATGATGCACT
91142007 GTATGTGCAA
Statistics
Matches: 158, Mismatches: 15, Indels: 18
0.83 0.08 0.09
Matches are distributed among these distances:
36 18 0.11
37 6 0.04
38 1 0.01
39 7 0.04
40 7 0.04
41 1 0.01
42 6 0.04
43 112 0.71
ACGTcount: A:0.21, C:0.16, G:0.21, T:0.42
Consensus pattern (43 bp):
TTATCCGATGATGCACTATGTGTGCCAGTATGTTGCTTCAGTT
Found at i:91142044 original size:122 final size:121
Alignment explanation
Indices: 91141808--91142024 Score: 285
Period size: 122 Copynumber: 1.8 Consensus size: 121
91141798 TATGTGTTCT
* * * *
91141808 AGTATGTTGCTTCAGTTTTATCCGATGATGCACTATGTGTGCCAGTATGTTGCTTCAGTATTATT
1 AGTATGTTGCTTCAGTTTTATCCAATGATGCACTATGTGTACCAGTATGTTGCTTCAATATTATC
* * * **
91141873 CGATGATGTACTATATGTGCCAGTACGTTGCTTCGATATTATATGATGATTGTGTGC
66 CAATGATGCACTATATGTGCAAG-ACGTTAATTCGATATTATATGATGATTGTGTGC
* * * *
91141930 AGTATGTTGCTTCGGTTTTATCCAATGATGCACTTTGTGTACCAGTATGTTGTTTCAATTTTATC
1 AGTATGTTGCTTCAGTTTTATCCAATGATGCACTATGTGTACCAGTATGTTGCTTCAATATTATC
*
91141995 CAATGATGCACTGTATGTGCAAG-C-TTAATT
66 CAATGATGCACTATATGTGCAAGACGTTAATT
91142025 ACGTTAATTC
Statistics
Matches: 81, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
119 4 0.05
120 1 0.01
122 76 0.94
ACGTcount: A:0.22, C:0.15, G:0.21, T:0.41
Consensus pattern (121 bp):
AGTATGTTGCTTCAGTTTTATCCAATGATGCACTATGTGTACCAGTATGTTGCTTCAATATTATC
CAATGATGCACTATATGTGCAAGACGTTAATTCGATATTATATGATGATTGTGTGC
Found at i:91143984 original size:29 final size:29
Alignment explanation
Indices: 91143917--91144012 Score: 131
Period size: 29 Copynumber: 3.3 Consensus size: 29
91143907 AAGTCTACAT
* *
91143917 ACATGCATATGGCCCACTAGGCCC-AATC
1 ACATTCATATGGCCCATTAGGCCCAAATC
*
91143945 TCATTCATATGGCCCATTAGGCCCAAATC
1 ACATTCATATGGCCCATTAGGCCCAAATC
* * *
91143974 ACATTCGTATGGCCCATTAGGACCAAAAC
1 ACATTCATATGGCCCATTAGGCCCAAATC
91144003 ACATTCATAT
1 ACATTCATAT
91144013 TCATGCTTTT
Statistics
Matches: 59, Mismatches: 8, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
28 21 0.36
29 38 0.64
ACGTcount: A:0.31, C:0.30, G:0.15, T:0.24
Consensus pattern (29 bp):
ACATTCATATGGCCCATTAGGCCCAAATC
Found at i:91150620 original size:48 final size:48
Alignment explanation
Indices: 91150549--91150836 Score: 508
Period size: 48 Copynumber: 6.0 Consensus size: 48
91150539 CAAGATAAAT
* *
91150549 ATATATATGTGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
* *
91150597 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
91150645 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
91150693 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
*
91150741 ATATGTATATGTGGTAAAG-C-AATGGCTAATGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
*
91150787 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTAGGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
91150835 AT
1 AT
91150837 GTGTGTATAT
Statistics
Matches: 229, Mismatches: 9, Indels: 4
0.95 0.04 0.02
Matches are distributed among these distances:
46 44 0.19
47 2 0.01
48 183 0.80
ACGTcount: A:0.35, C:0.06, G:0.28, T:0.31
Consensus pattern (48 bp):
ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
Found at i:91151073 original size:36 final size:37
Alignment explanation
Indices: 91150977--91151078 Score: 179
Period size: 37 Copynumber: 2.8 Consensus size: 37
91150967 GGAAATATAT
91150977 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
91151014 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
91151051 TCCGGGTAAGA-CCGATAACTACGTGTGG
1 TCCGGGTAAGACCCGATGACTACGTGTGG
91151079 GGACTATTCG
Statistics
Matches: 63, Mismatches: 2, Indels: 1
0.95 0.03 0.02
Matches are distributed among these distances:
36 16 0.25
37 47 0.75
ACGTcount: A:0.24, C:0.20, G:0.32, T:0.25
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:91152413 original size:40 final size:40
Alignment explanation
Indices: 91152354--91152685 Score: 538
Period size: 40 Copynumber: 8.3 Consensus size: 40
91152344 GAGTTATATA
* *
91152354 TATCCAGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATG
1 TATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATG
91152394 TATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATG
1 TATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATG
* ***
91152434 AATCCGGGCTAAGTTTATAAGAGCATTCGTGCTAGTGATG
1 TATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATG
*
91152474 TATCCGGGCTATGTTCCGAAGAGCATTCGTGCTAGTGATG
1 TATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATG
91152514 TATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATG
1 TATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATG
*
91152554 TATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTAATG
1 TATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATG
* * *
91152594 TATCCGGGCTAAGTTTCGAAGAGCATTCATGCTAGTAATG
1 TATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATG
* * *
91152634 TATCCGGGCTAAGTTTCGAAAAGCATTCGTGCTAGTGATA
1 TATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATG
91152674 TATCCGGGCTAA
1 TATCCGGGCTAA
91152686 ACCTCGAAGG
Statistics
Matches: 273, Mismatches: 19, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
40 273 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (40 bp):
TATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATG
Found at i:91152757 original size:28 final size:27
Alignment explanation
Indices: 91152717--91152873 Score: 143
Period size: 28 Copynumber: 5.6 Consensus size: 27
91152707 GAGTTATGAG
* * *
91152717 GCACTGTGTGTGCAAGTTCTTCAACCGA
1 GCACTATGTGTGCGAGTTCTT-AATCGA
* * * * *
91152745 GCACTATGTGTGCCAGATCAGTAGTTGA
1 GCACTATGTGTGCGAGTTC-TTAATCGA
91152773 GGCACTATGTGTGCGAGTTCTTCAATCGA
1 -GCACTATGTGTGCGAGTTCTT-AATCGA
** *
91152802 GCACTATGTGTGCGAGATTGGTAATTGA
1 GCACTATGTGTGCGAG-TTCTTAATCGA
91152830 GGCACTATGTGTGCGAGTTCTTTAATCGA
1 -GCACTATGTGTGCGAGTTC-TTAATCGA
*
91152859 GCGCTATGTGTGCGA
1 GCACTATGTGTGCGA
91152874 AATCAGTCAG
Statistics
Matches: 104, Mismatches: 19, Indels: 12
0.77 0.14 0.09
Matches are distributed among these distances:
28 57 0.55
29 47 0.45
ACGTcount: A:0.22, C:0.18, G:0.29, T:0.31
Consensus pattern (27 bp):
GCACTATGTGTGCGAGTTCTTAATCGA
Found at i:91152780 original size:29 final size:28
Alignment explanation
Indices: 91152745--91152873 Score: 118
Period size: 29 Copynumber: 4.5 Consensus size: 28
91152735 CTTCAACCGA
* *
91152745 GCACTATGTGTGCCAGATCAGTAGTTGAG
1 GCACTATGTGTGCGAGATC-GTAATTGAG
* * *
91152774 GCACTATGTGTGCGAGTTCTTCAATCGA-
1 GCACTATGTGTGCGAGATCGT-AATTGAG
*
91152802 GCACTATGTGTGCGAGATTGGTAATTGAG
1 GCACTATGTGTGCGAGA-TCGTAATTGAG
* * *
91152831 GCACTATGTGTGCGAGTTCTTTAATCGA-
1 GCACTATGTGTGCGAGATC-GTAATTGAG
*
91152859 GCGCTATGTGTGCGA
1 GCACTATGTGTGCGA
91152874 AATCAGTCAG
Statistics
Matches: 82, Mismatches: 14, Indels: 9
0.78 0.13 0.09
Matches are distributed among these distances:
28 37 0.45
29 45 0.55
ACGTcount: A:0.22, C:0.17, G:0.30, T:0.31
Consensus pattern (28 bp):
GCACTATGTGTGCGAGATCGTAATTGAG
Found at i:91152803 original size:57 final size:57
Alignment explanation
Indices: 91152713--91152901 Score: 247
Period size: 57 Copynumber: 3.3 Consensus size: 57
91152703 GCTGGAGTTA
* * * *
91152713 TGAGGCACTGTGTGTGCAAGTTCTTCAACCGAGCACTATGTGTGCCAGATCAGTAGT
1 TGAGGCACTATGTGTGCGAGTTCTTCAATCGAGCACTATGTGTGCGAGATCAGTAGT
** *
91152770 TGAGGCACTATGTGTGCGAGTTCTTCAATCGAGCACTATGTGTGCGAGATTGGTAAT
1 TGAGGCACTATGTGTGCGAGTTCTTCAATCGAGCACTATGTGTGCGAGATCAGTAGT
* * *
91152827 TGAGGCACTATGTGTGCGAGTTCTTTAATCGAGCGCTATGTGTGCGAAATCAGTCAG-
1 TGAGGCACTATGTGTGCGAGTTCTTCAATCGAGCACTATGTGTGCGAGATCAGT-AGT
* *
91152884 TG-GGCACTGTGTATGCGA
1 TGAGGCACTATGTGTGCGA
91152902 AGTGTGTTTC
Statistics
Matches: 116, Mismatches: 15, Indels: 3
0.87 0.11 0.02
Matches are distributed among these distances:
56 14 0.12
57 101 0.87
58 1 0.01
ACGTcount: A:0.22, C:0.18, G:0.30, T:0.30
Consensus pattern (57 bp):
TGAGGCACTATGTGTGCGAGTTCTTCAATCGAGCACTATGTGTGCGAGATCAGTAGT
Found at i:91156477 original size:48 final size:48
Alignment explanation
Indices: 91156406--91156693 Score: 499
Period size: 48 Copynumber: 6.0 Consensus size: 48
91156396 CAAGATAAAT
* *
91156406 ATATATATGTGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
* *
91156454 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
91156502 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
91156550 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
*
91156598 ATATGTATATGTGGTAAAG-C-AATGGCTAATGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
* *
91156644 ATATGTATATGTGGTAAAGTCGAATGGCTAGTGTGAAATATGTAGGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
91156692 AT
1 AT
91156694 GTGTGTATAT
Statistics
Matches: 229, Mismatches: 9, Indels: 4
0.95 0.04 0.02
Matches are distributed among these distances:
46 44 0.19
47 2 0.01
48 183 0.80
ACGTcount: A:0.35, C:0.06, G:0.28, T:0.32
Consensus pattern (48 bp):
ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
Found at i:91156884 original size:37 final size:37
Alignment explanation
Indices: 91156834--91156936 Score: 179
Period size: 37 Copynumber: 2.8 Consensus size: 37
91156824 GGAAATATAT
91156834 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* *
91156871 TCCGGGTAAGACCCGATGACTACGTGTAGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
91156908 TCCGGGTAAGACCCGATAACTACGTGTGG
1 TCCGGGTAAGACCCGATGACTACGTGTGG
91156937 GGACTATTCG
Statistics
Matches: 62, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 62 1.00
ACGTcount: A:0.24, C:0.20, G:0.31, T:0.24
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:91158438 original size:29 final size:29
Alignment explanation
Indices: 91158375--91158494 Score: 170
Period size: 29 Copynumber: 4.2 Consensus size: 29
91158365 TACATGCATG
* * **
91158375 CATATGGCCCACTAGGCCC-AATCTCAAC
1 CATATGGCCCATTAGGCCCAAATCACATT
91158403 CATATGGCCCATTAGGCCCAAATCACATT
1 CATATGGCCCATTAGGCCCAAATCACATT
*
91158432 CGTATGGCCCATTAGGCCCAAATCACATT
1 CATATGGCCCATTAGGCCCAAATCACATT
* *
91158461 CATGTGGCCCATTAGGCCCAAATAACATT
1 CATATGGCCCATTAGGCCCAAATCACATT
91158490 CATAT
1 CATAT
91158495 TCATGCTTTT
Statistics
Matches: 82, Mismatches: 9, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
28 18 0.22
29 64 0.78
ACGTcount: A:0.30, C:0.32, G:0.15, T:0.23
Consensus pattern (29 bp):
CATATGGCCCATTAGGCCCAAATCACATT
Found at i:91158715 original size:16 final size:16
Alignment explanation
Indices: 91158694--91158725 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
91158684 AAACTTCTGA
*
91158694 CTTTTCGGCATTTCAG
1 CTTTTCAGCATTTCAG
91158710 CTTTTCAGCATTTCAG
1 CTTTTCAGCATTTCAG
91158726 GATTTGCCGA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.16, C:0.25, G:0.16, T:0.44
Consensus pattern (16 bp):
CTTTTCAGCATTTCAG
Found at i:91164188 original size:28 final size:28
Alignment explanation
Indices: 91164172--91164229 Score: 98
Period size: 28 Copynumber: 2.1 Consensus size: 28
91164162 TACAGTGTTA
91164172 TATGAGATTTTGATTTAACAGATTGTAT
1 TATGAGATTTTGATTTAACAGATTGTAT
* *
91164200 TATGAGATTTTGATTTGACAGATTTTAT
1 TATGAGATTTTGATTTAACAGATTGTAT
91164228 TA
1 TA
91164230 ACTGATCAGT
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.31, C:0.03, G:0.17, T:0.48
Consensus pattern (28 bp):
TATGAGATTTTGATTTAACAGATTGTAT
Found at i:91164224 original size:15 final size:15
Alignment explanation
Indices: 91164176--91164225 Score: 52
Period size: 15 Copynumber: 3.5 Consensus size: 15
91164166 GTGTTATATG
*
91164176 AGATTTTGATTTAAC
1 AGATTTTGATTTGAC
*
91164191 AGATTGT-ATTATG--
1 AGATTTTGATT-TGAC
91164204 AGATTTTGATTTGAC
1 AGATTTTGATTTGAC
91164219 AGATTTT
1 AGATTTT
91164226 ATTAACTGAT
Statistics
Matches: 28, Mismatches: 3, Indels: 8
0.72 0.08 0.21
Matches are distributed among these distances:
13 8 0.29
14 6 0.21
15 14 0.50
ACGTcount: A:0.30, C:0.04, G:0.18, T:0.48
Consensus pattern (15 bp):
AGATTTTGATTTGAC
Found at i:91166467 original size:28 final size:27
Alignment explanation
Indices: 91166390--91166467 Score: 75
Period size: 28 Copynumber: 2.8 Consensus size: 27
91166380 GAAACTCCAG
** *
91166390 TGGGTAAAATGACTAAAATACCCCTGA
1 TGGGTAAAATGACTATTATACCCCTAA
* * *
91166417 GGGGTAAAAATTACTATTCTACCCCTAA
1 TGGGT-AAAATGACTATTATACCCCTAA
*
91166445 TGGGTGAAAATGACTGTTATACC
1 TGGGT-AAAATGACTATTATACC
91166468 TTAGGTAGGT
Statistics
Matches: 39, Mismatches: 11, Indels: 1
0.76 0.22 0.02
Matches are distributed among these distances:
27 4 0.10
28 35 0.90
ACGTcount: A:0.36, C:0.18, G:0.19, T:0.27
Consensus pattern (27 bp):
TGGGTAAAATGACTATTATACCCCTAA
Found at i:91168419 original size:49 final size:49
Alignment explanation
Indices: 91168342--91168586 Score: 310
Period size: 49 Copynumber: 4.9 Consensus size: 49
91168332 TAGCTGAAGC
* * *
91168342 TATCTGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAAT
1 TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGCGACCAAT
* * * *
91168391 TATCCGGTACACGTAGTAGCCTGCACTTAGAACTACACACGTGACCTAAC
1 TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGCGACC-AAT
* * * *
91168441 CATCTGATACACGTAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGT
1 TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGCGA-CCAA-T
* * * * *
91168492 TATCAGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCAACCAAT
1 TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGCGACCAAT
*
91168541 TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACC
1 TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGCGACC
91168587 TCACAATAGC
Statistics
Matches: 165, Mismatches: 28, Indels: 6
0.83 0.14 0.03
Matches are distributed among these distances:
49 81 0.49
50 47 0.28
51 37 0.22
ACGTcount: A:0.29, C:0.27, G:0.18, T:0.25
Consensus pattern (49 bp):
TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGCGACCAAT
Found at i:91170084 original size:42 final size:42
Alignment explanation
Indices: 91170025--91170107 Score: 157
Period size: 42 Copynumber: 2.0 Consensus size: 42
91170015 TTATGTTCTG
91170025 TATGACTTGCATATATGATTGTGCTAAGTATGACTTTGCATA
1 TATGACTTGCATATATGATTGTGCTAAGTATGACTTTGCATA
*
91170067 TATGATTTGCATATATGATTGTGCTAAGTATGACTTTGCAT
1 TATGACTTGCATATATGATTGTGCTAAGTATGACTTTGCAT
91170108 GCATGTAATA
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
42 40 1.00
ACGTcount: A:0.28, C:0.11, G:0.19, T:0.42
Consensus pattern (42 bp):
TATGACTTGCATATATGATTGTGCTAAGTATGACTTTGCATA
Found at i:91170099 original size:15 final size:13
Alignment explanation
Indices: 91170025--91170086 Score: 72
Period size: 13 Copynumber: 4.5 Consensus size: 13
91170015 TTATGTTCTG
*
91170025 TATGACTTGCATA
1 TATGATTTGCATA
91170038 TATGATTGTGC-TAA
1 TATGATT-TGCAT-A
91170052 GTATGACTTTGCATA
1 -TATGA-TTTGCATA
91170067 TATGATTTGCATA
1 TATGATTTGCATA
91170080 TATGATT
1 TATGATT
91170087 GTGCTAAGTA
Statistics
Matches: 43, Mismatches: 1, Indels: 10
0.80 0.02 0.19
Matches are distributed among these distances:
13 22 0.51
14 9 0.21
15 9 0.21
16 3 0.07
ACGTcount: A:0.29, C:0.10, G:0.18, T:0.44
Consensus pattern (13 bp):
TATGATTTGCATA
Found at i:91170907 original size:55 final size:55
Alignment explanation
Indices: 91170821--91170942 Score: 208
Period size: 55 Copynumber: 2.2 Consensus size: 55
91170811 TTTCTGATTT
* *
91170821 TCTTTTAAGTTATCTATTTACAAGTACTTATATTTGATCTGGGTTGTAACAAGGCC
1 TCTTTTAA-TTTTCTATTTACAAGTACTTATATTTGATATGGGTTGTAACAAGGCC
*
91170877 TCTTTTAATTTTCTATTTACAAGTATTTATATTTGATATGGGTTGTAACAAGGCC
1 TCTTTTAATTTTCTATTTACAAGTACTTATATTTGATATGGGTTGTAACAAGGCC
91170932 TCTTTTAATTT
1 TCTTTTAATTT
91170943 CTGGTTCTAA
Statistics
Matches: 63, Mismatches: 3, Indels: 1
0.94 0.04 0.01
Matches are distributed among these distances:
55 55 0.87
56 8 0.13
ACGTcount: A:0.26, C:0.12, G:0.14, T:0.48
Consensus pattern (55 bp):
TCTTTTAATTTTCTATTTACAAGTACTTATATTTGATATGGGTTGTAACAAGGCC
Found at i:91174482 original size:22 final size:22
Alignment explanation
Indices: 91174455--91174510 Score: 94
Period size: 22 Copynumber: 2.5 Consensus size: 22
91174445 GGCCTTTAGC
91174455 CATCCTGTCTACGGTGTTGAGT
1 CATCCTGTCTACGGTGTTGAGT
*
91174477 CGTCCTGTCTACGGTGTTGAGT
1 CATCCTGTCTACGGTGTTGAGT
*
91174499 CATCATGTCTAC
1 CATCCTGTCTAC
91174511 AACGTTGAGC
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 31 1.00
ACGTcount: A:0.14, C:0.25, G:0.25, T:0.36
Consensus pattern (22 bp):
CATCCTGTCTACGGTGTTGAGT
Found at i:91178088 original size:13 final size:13
Alignment explanation
Indices: 91178070--91178094 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
91178060 TCTCAAAAGG
91178070 ATTTAGTTCAAAA
1 ATTTAGTTCAAAA
91178083 ATTTAGTTCAAA
1 ATTTAGTTCAAA
91178095 TCAGTAGAGC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.44, C:0.08, G:0.08, T:0.40
Consensus pattern (13 bp):
ATTTAGTTCAAAA
Found at i:91178853 original size:18 final size:18
Alignment explanation
Indices: 91178830--91178873 Score: 52
Period size: 18 Copynumber: 2.4 Consensus size: 18
91178820 TTAATTTTTT
91178830 TTTTCAATTTTAAGTTTA
1 TTTTCAATTTTAAGTTTA
* **
91178848 TTTTCATTTTTATTTTTA
1 TTTTCAATTTTAAGTTTA
*
91178866 TGTTCAAT
1 TTTTCAAT
91178874 AGGAGGGTCA
Statistics
Matches: 21, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.23, C:0.07, G:0.05, T:0.66
Consensus pattern (18 bp):
TTTTCAATTTTAAGTTTA
Found at i:91183276 original size:16 final size:16
Alignment explanation
Indices: 91183255--91183340 Score: 63
Period size: 16 Copynumber: 5.4 Consensus size: 16
91183245 TGATATGACA
91183255 TTTTGATATGATATGT
1 TTTTGATATGATATGT
* *
91183271 TTTTGA-A-AATATGACA
1 TTTTGATATGATATG--T
*
91183287 TTTTGATTTGATATGT
1 TTTTGATATGATATGT
* *
91183303 TTTTGA-A-AATATGACA
1 TTTTGATATGATATG--T
91183319 TTTTGATATGATATGT
1 TTTTGATATGATATGT
91183335 TTTTGA
1 TTTTGA
91183341 AATATGACAT
Statistics
Matches: 52, Mismatches: 10, Indels: 16
0.67 0.13 0.21
Matches are distributed among these distances:
14 10 0.19
15 1 0.02
16 30 0.58
17 1 0.02
18 10 0.19
ACGTcount: A:0.30, C:0.02, G:0.16, T:0.51
Consensus pattern (16 bp):
TTTTGATATGATATGT
Found at i:91183288 original size:32 final size:32
Alignment explanation
Indices: 91183247--91183351 Score: 194
Period size: 32 Copynumber: 3.3 Consensus size: 32
91183237 TTCTGATCTG
91183247 ATATGACATTTTGATATGATATGTTTTTGAAA
1 ATATGACATTTTGATATGATATGTTTTTGAAA
*
91183279 ATATGACATTTTGATTTGATATGTTTTTGAAA
1 ATATGACATTTTGATATGATATGTTTTTGAAA
91183311 ATATGACATTTTGATATGATATGTTTTTG-AA
1 ATATGACATTTTGATATGATATGTTTTTGAAA
91183342 ATATGACATT
1 ATATGACATT
91183352 CTGGTCTTGT
Statistics
Matches: 71, Mismatches: 2, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
31 12 0.17
32 59 0.83
ACGTcount: A:0.33, C:0.04, G:0.15, T:0.48
Consensus pattern (32 bp):
ATATGACATTTTGATATGATATGTTTTTGAAA
Found at i:91183399 original size:34 final size:34
Alignment explanation
Indices: 91183280--91183426 Score: 117
Period size: 34 Copynumber: 4.5 Consensus size: 34
91183270 TTTTTGAAAA
** * * *
91183280 TATGACATTTTGA-TTTG-ATATGTTTTTGAAAA
1 TATGACATTTTGATTTTGTATATAATATTGGAAC
* * * * *
91183312 TATGACATTTTGA-TATG-ATAT-GTTTTTGAAA
1 TATGACATTTTGATTTTGTATATAATATTGGAAC
* * *
91183343 TATGACATTCTGGTCTTGTATATAAT-TCTGGAAC
1 TATGACATTTTGATTTTGTATATAATAT-TGGAAC
*
91183377 TATGACATTTTGATTTTTTATATAATATTGGAAC
1 TATGACATTTTGATTTTGTATATAATATTGGAAC
91183411 TATGACATTTTGATTT
1 TATGACATTTTGATTT
91183427 AATATATGTT
Statistics
Matches: 95, Mismatches: 15, Indels: 8
0.81 0.13 0.07
Matches are distributed among these distances:
31 18 0.19
32 22 0.23
33 5 0.05
34 49 0.52
35 1 0.01
ACGTcount: A:0.30, C:0.07, G:0.15, T:0.48
Consensus pattern (34 bp):
TATGACATTTTGATTTTGTATATAATATTGGAAC
Found at i:91183802 original size:19 final size:21
Alignment explanation
Indices: 91183758--91183810 Score: 65
Period size: 19 Copynumber: 2.6 Consensus size: 21
91183748 AAACAGGGTC
91183758 ACATGCCTGTGTGGGCACAGGG
1 ACATGCCTGTGT-GGCACAGGG
*
91183780 ACATGCCTGTGT-GCCCA-GG
1 ACATGCCTGTGTGGCACAGGG
*
91183799 ACATGCCCGTGT
1 ACATGCCTGTGT
91183811 CTTCAGGCCT
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
19 13 0.45
20 4 0.14
22 12 0.41
ACGTcount: A:0.17, C:0.28, G:0.34, T:0.21
Consensus pattern (21 bp):
ACATGCCTGTGTGGCACAGGG
Found at i:91185767 original size:49 final size:49
Alignment explanation
Indices: 91185705--91185834 Score: 172
Period size: 49 Copynumber: 2.7 Consensus size: 49
91185695 ACATCTAAGT
* *
91185705 CGATGCCATGTCCCAGACAGGTCTTATACTGACTTTCATATATCGAG-GC
1 CGATGCCATGTCCCAGACAGGTCTTACACTGACTCTCATATATCG-GTGC
* * * * *
91185754 CGATGTCGTGTCCCAGACAGGTCTTACACTGGCTCTCATCTATCGGTGT
1 CGATGCCATGTCCCAGACAGGTCTTACACTGACTCTCATATATCGGTGC
*
91185803 CGATGCCATGTCCCAGATAGGTCTTACACTGA
1 CGATGCCATGTCCCAGACAGGTCTTACACTGA
91185835 AACACAACAA
Statistics
Matches: 69, Mismatches: 11, Indels: 2
0.84 0.13 0.02
Matches are distributed among these distances:
48 1 0.01
49 68 0.99
ACGTcount: A:0.22, C:0.28, G:0.22, T:0.28
Consensus pattern (49 bp):
CGATGCCATGTCCCAGACAGGTCTTACACTGACTCTCATATATCGGTGC
Found at i:91185953 original size:46 final size:46
Alignment explanation
Indices: 91185853--91186019 Score: 180
Period size: 46 Copynumber: 3.6 Consensus size: 46
91185843 AAGCTTACGC
* * * *
91185853 CATGTCCCAGACAGGTCTTACACTAGCTTGTATATCTCAAGGCCGATG
1 CATGTCCCAGACATGTCTTACACTAGC-TCT-CATCTCAATGCCGATG
*
91185901 CATGTCCCAGGCATGTCTTACACTAGCTCTCATCTCAATGCCGATG
1 CATGTCCCAGACATGTCTTACACTAGCTCTCATCTCAATGCCGATG
* **
91185947 CATGTCCC-GAACATGTCTTACACTGGCTCTCA--T-AATGTGATTGATG
1 CATGTCCCAG-ACATGTCTTACACTAGCTCTCATCTCAA--TG-CCGATG
91185993 CATGTCCCAGACATGTCTTACACTAGC
1 CATGTCCCAGACATGTCTTACACTAGC
91186020 ACACATATCA
Statistics
Matches: 104, Mismatches: 10, Indels: 12
0.83 0.08 0.10
Matches are distributed among these distances:
43 2 0.02
44 1 0.01
45 3 0.03
46 70 0.67
47 3 0.03
48 25 0.24
ACGTcount: A:0.24, C:0.29, G:0.19, T:0.29
Consensus pattern (46 bp):
CATGTCCCAGACATGTCTTACACTAGCTCTCATCTCAATGCCGATG
Found at i:91188185 original size:21 final size:20
Alignment explanation
Indices: 91188159--91188199 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 20
91188149 TACTATACTC
91188159 ATATTTGATA-TTTAATATTTA
1 ATATTT-ATATTTTAAT-TTTA
91188180 ATATTTATATTTTAATTTTA
1 ATATTTATATTTTAATTTTA
91188200 CATAATCTGA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
20 7 0.37
21 12 0.63
ACGTcount: A:0.37, C:0.00, G:0.02, T:0.61
Consensus pattern (20 bp):
ATATTTATATTTTAATTTTA
Found at i:91188199 original size:6 final size:7
Alignment explanation
Indices: 91188159--91188191 Score: 50
Period size: 7 Copynumber: 4.9 Consensus size: 7
91188149 TACTATACTC
*
91188159 ATATTTG
1 ATATTTA
91188166 ATATTTA
1 ATATTTA
91188173 ATATTTA
1 ATATTTA
91188180 ATATTT-
1 ATATTTA
91188186 ATATTT
1 ATATTT
91188192 TAATTTTACA
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
6 6 0.24
7 19 0.76
ACGTcount: A:0.36, C:0.00, G:0.03, T:0.61
Consensus pattern (7 bp):
ATATTTA
Found at i:91193844 original size:46 final size:46
Alignment explanation
Indices: 91193794--91193969 Score: 205
Period size: 46 Copynumber: 3.8 Consensus size: 46
91193784 TGGTTGAGCA
*
91193794 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
* * * * *
91193840 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--AATGTAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--ATG
* *
91193885 CATCTGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
* *
91193933 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
91193970 GCGGGTTACA
Statistics
Matches: 108, Mismatches: 15, Indels: 14
0.79 0.11 0.10
Matches are distributed among these distances:
43 4 0.04
45 4 0.04
46 63 0.58
47 28 0.26
48 4 0.04
50 5 0.05
ACGTcount: A:0.22, C:0.20, G:0.28, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
Found at i:91193950 original size:93 final size:93
Alignment explanation
Indices: 91193791--91193961 Score: 297
Period size: 93 Copynumber: 1.8 Consensus size: 93
91193781 GGATGGTTGA
* * *
91193791 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
91193856 TGAGTCCGAGTTCGTGAAATGTAACTAG
66 TGAGTCCGAGTTCGTGAAATGTAACTAG
* *
91193884 GCATCTGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
91193949 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
91193962 ACTTATGGGC
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAAATGTAACTAG
Found at i:91196571 original size:15 final size:15
Alignment explanation
Indices: 91196551--91196582 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
91196541 AAAAGCTAGT
*
91196551 GGTGCAAACTCGAGG
1 GGTGCAAACTCAAGG
91196566 GGTGCAAACTCAAGG
1 GGTGCAAACTCAAGG
91196581 GG
1 GG
91196583 AAGGTATCCG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.28, C:0.19, G:0.41, T:0.12
Consensus pattern (15 bp):
GGTGCAAACTCAAGG
Found at i:91199269 original size:18 final size:17
Alignment explanation
Indices: 91199246--91199279 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
91199236 TTACAAGTCC
*
91199246 TACCAACACACCACACCG
1 TACCAAC-CAACACACCG
91199264 TACCAACCAACACACC
1 TACCAACCAACACACC
91199280 ATGTGGGGAT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 8 0.53
18 7 0.47
ACGTcount: A:0.41, C:0.50, G:0.03, T:0.06
Consensus pattern (17 bp):
TACCAACCAACACACCG
Found at i:91199367 original size:27 final size:27
Alignment explanation
Indices: 91199335--91199399 Score: 69
Period size: 27 Copynumber: 2.4 Consensus size: 27
91199325 AGCAAAGTTG
91199335 CCAGTAACAGTAAATGTGGCAAAGCAA
1 CCAGTAACAGTAAATGTGGCAAAGCAA
* * ** * *
91199362 CGAGTAATAGTAGTTGTGGCAGAGCCA
1 CCAGTAACAGTAAATGTGGCAAAGCAA
91199389 CCAGT-ACAGTA
1 CCAGTAACAGTA
91199400 CTTCCTCCAA
Statistics
Matches: 30, Mismatches: 8, Indels: 1
0.77 0.21 0.03
Matches are distributed among these distances:
26 5 0.17
27 25 0.83
ACGTcount: A:0.37, C:0.18, G:0.26, T:0.18
Consensus pattern (27 bp):
CCAGTAACAGTAAATGTGGCAAAGCAA
Found at i:91207226 original size:27 final size:28
Alignment explanation
Indices: 91207196--91207488 Score: 327
Period size: 27 Copynumber: 10.8 Consensus size: 28
91207186 ATTACCAAAG
* * *
91207196 TACCCCCGATTTATAGAATTACT-GTTT
1 TACCCTCGATTTACAAAATTACTCGTTT
*
91207223 TACCCTCGATTTACAAAATTA-TCATTT
1 TACCCTCGATTTACAAAATTACTCGTTT
*
91207250 TACCCTCGATTTACAAAATTAC-CATTT
1 TACCCTCGATTTACAAAATTACTCGTTT
* * * * *
91207277 TACTCTCAATTTATAGAATTA-TCATTT
1 TACCCTCGATTTACAAAATTACTCGTTT
*
91207304 TACCCTTGATTTACAAAATTAC-CGTTT
1 TACCCTCGATTTACAAAATTACTCGTTT
* *
91207331 TACCCTCAAATTACAAAATTA-TCGTTT
1 TACCCTCGATTTACAAAATTACTCGTTT
91207358 TACCCTCGATTTACAAAATTAC-CGTTT
1 TACCCTCGATTTACAAAATTACTCGTTT
*
91207385 TACCCTTGATTTACAAAATTA-TCGTTT
1 TACCCTCGATTTACAAAATTACTCGTTT
* * *
91207412 TACCCTCGATTTATAGAATTA-TCATTT
1 TACCCTCGATTTACAAAATTACTCGTTT
* * *
91207439 TACCCTCAATTTATAGAATTACT-GTTT
1 TACCCTCGATTTACAAAATTACTCGTTT
*
91207466 TATCCTCGATTTACAAAATTACT
1 TACCCTCGATTTACAAAATTACT
91207489 AAAATACCCT
Statistics
Matches: 228, Mismatches: 30, Indels: 16
0.83 0.11 0.06
Matches are distributed among these distances:
26 1 0.00
27 226 0.99
28 1 0.00
ACGTcount: A:0.31, C:0.21, G:0.06, T:0.41
Consensus pattern (28 bp):
TACCCTCGATTTACAAAATTACTCGTTT
Found at i:91207293 original size:81 final size:81
Alignment explanation
Indices: 91207204--91207486 Score: 397
Period size: 81 Copynumber: 3.5 Consensus size: 81
91207194 AGTACCCCCG
*
91207204 ATTTATAGAATTACTGTTTTACCCTCGATTTACAAAATTATCATTTTACCCTCGATTTACAAAAT
1 ATTTATAGAATTACTGTTTTACCCTCGATTTACAAAATTATCGTTTTACCCTCGATTTACAAAAT
* *
91207269 TACCATTTTACTCTCA
66 TATCATTTTACCCTCA
* * * * *
91207285 ATTTATAGAATTA-TCATTTTACCCTTGATTTACAAAATTACCGTTTTACCCTCAAATTACAAAA
1 ATTTATAGAATTACT-GTTTTACCCTCGATTTACAAAATTATCGTTTTACCCTCGATTTACAAAA
* *
91207349 TTATCGTTTTACCCTCG
65 TTATCATTTTACCCTCA
* * * * * *
91207366 ATTTACAAAATTACCGTTTTACCCTTGATTTACAAAATTATCGTTTTACCCTCGATTTATAGAAT
1 ATTTATAGAATTACTGTTTTACCCTCGATTTACAAAATTATCGTTTTACCCTCGATTTACAAAAT
91207431 TATCATTTTACCCTCA
66 TATCATTTTACCCTCA
*
91207447 ATTTATAGAATTACTGTTTTATCCTCGATTTACAAAATTA
1 ATTTATAGAATTACTGTTTTACCCTCGATTTACAAAATTA
91207487 CTAAAATACC
Statistics
Matches: 174, Mismatches: 26, Indels: 4
0.85 0.13 0.02
Matches are distributed among these distances:
80 1 0.01
81 173 0.99
ACGTcount: A:0.32, C:0.20, G:0.06, T:0.42
Consensus pattern (81 bp):
ATTTATAGAATTACTGTTTTACCCTCGATTTACAAAATTATCGTTTTACCCTCGATTTACAAAAT
TATCATTTTACCCTCA
Found at i:91207498 original size:54 final size:54
Alignment explanation
Indices: 91207196--91207487 Score: 361
Period size: 54 Copynumber: 5.4 Consensus size: 54
91207186 ATTACCAAAG
* * * ** * *
91207196 TACCCCCGATTTATAGAATTACTGTTTTACCCTCGATTTACAAAATTATCATTT
1 TACCCTCGATTTACAAAATTACCATTTTACCCTCAATTTACAAAATTATCGTTT
* * * *
91207250 TACCCTCGATTTACAAAATTACCATTTTACTCTCAATTTATAGAATTATCATTT
1 TACCCTCGATTTACAAAATTACCATTTTACCCTCAATTTACAAAATTATCGTTT
* * *
91207304 TACCCTTGATTTACAAAATTACCGTTTTACCCTCAAATTACAAAATTATCGTTT
1 TACCCTCGATTTACAAAATTACCATTTTACCCTCAATTTACAAAATTATCGTTT
* **
91207358 TACCCTCGATTTACAAAATTACCGTTTTACCCTTGATTTACAAAATTATCGTTT
1 TACCCTCGATTTACAAAATTACCATTTTACCCTCAATTTACAAAATTATCGTTT
* * * * *
91207412 TACCCTCGATTTATAGAATTATCATTTTACCCTCAATTTATAGAATTA-CTGTTT
1 TACCCTCGATTTACAAAATTACCATTTTACCCTCAATTTACAAAATTATC-GTTT
*
91207466 TATCCTCGATTTACAAAATTAC
1 TACCCTCGATTTACAAAATTAC
91207488 TAAAATACCC
Statistics
Matches: 205, Mismatches: 32, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
53 1 0.00
54 204 1.00
ACGTcount: A:0.32, C:0.21, G:0.06, T:0.41
Consensus pattern (54 bp):
TACCCTCGATTTACAAAATTACCATTTTACCCTCAATTTACAAAATTATCGTTT
Found at i:91207554 original size:27 final size:27
Alignment explanation
Indices: 91207480--91207603 Score: 119
Period size: 27 Copynumber: 4.6 Consensus size: 27
91207470 CTCGATTTAC
* * **
91207480 AAAATTACTAAAATA-CCCTTAGTTTAC
1 AAAATTACCAAAATACCCCTGA-TTTGT
* *
91207507 AAAATTACCGAAATACCCCTGGTTTGT
1 AAAATTACCAAAATACCCCTGATTTGT
91207534 AAAATTACCAAAATACCCCTGATTTGT
1 AAAATTACCAAAATACCCCTGATTTGT
* * *
91207561 GAAATTATCAAAATA-CTCTCGATTTGT
1 AAAATTACCAAAATACCCCT-GATTTGT
*
91207588 AAAA-TATCAAAATACC
1 AAAATTACCAAAATACC
91207604 TTGTAGGGTA
Statistics
Matches: 82, Mismatches: 12, Indels: 6
0.82 0.12 0.06
Matches are distributed among these distances:
26 13 0.16
27 65 0.79
28 4 0.05
ACGTcount: A:0.42, C:0.19, G:0.08, T:0.31
Consensus pattern (27 bp):
AAAATTACCAAAATACCCCTGATTTGT
Found at i:91207640 original size:27 final size:27
Alignment explanation
Indices: 91207597--91207752 Score: 183
Period size: 27 Copynumber: 5.9 Consensus size: 27
91207587 TAAAATATCA
91207597 AAATA-CCTTGTAGGGTAGAAATACCG
1 AAATACCCTTGTAGGGTAGAAATACCG
* **
91207623 AAATACCCTTGTAGGGTAGAATTACTA
1 AAATACCCTTGTAGGGTAGAAATACCG
* * *
91207650 AAATA-CCTCTATAGGGTAGAATTACTG
1 AAATACCCT-TGTAGGGTAGAAATACCG
91207677 AAATACCCTTGTAGGGTAGAAATACCG
1 AAATACCCTTGTAGGGTAGAAATACCG
* * *
91207704 AAATACCCCTGTAGGATAGAATTACCG
1 AAATACCCTTGTAGGGTAGAAATACCG
* *
91207731 AGATACCCTTGTGGGGTA-AAAT
1 AAATACCCTTGTAGGGTAGAAAT
91207753 TACCATTTTA
Statistics
Matches: 111, Mismatches: 16, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
26 11 0.10
27 97 0.87
28 3 0.03
ACGTcount: A:0.37, C:0.17, G:0.21, T:0.26
Consensus pattern (27 bp):
AAATACCCTTGTAGGGTAGAAATACCG
Found at i:91207680 original size:54 final size:54
Alignment explanation
Indices: 91207595--91207757 Score: 220
Period size: 54 Copynumber: 3.0 Consensus size: 54
91207585 TGTAAAATAT
*
91207595 CAAAATACCT-TGTAGGGTAGAAATACCGAAATACCCTTGTAGGGTAGAATTAC
1 CAAAATACCTCTGTAGGGTAGAATTACCGAAATACCCTTGTAGGGTAGAATTAC
* * * *
91207648 TAAAATACCTCTATAGGGTAGAATTACTGAAATACCCTTGTAGGGTAGAAATAC
1 CAAAATACCTCTGTAGGGTAGAATTACCGAAATACCCTTGTAGGGTAGAATTAC
* * * * * *
91207702 CGAAATACCCCTGTAGGATAGAATTACCGAGATACCCTTGTGGGGTAAAATTAC
1 CAAAATACCTCTGTAGGGTAGAATTACCGAAATACCCTTGTAGGGTAGAATTAC
91207756 CA
1 CA
91207758 TTTTACCCCT
Statistics
Matches: 93, Mismatches: 16, Indels: 1
0.85 0.15 0.01
Matches are distributed among these distances:
53 9 0.10
54 84 0.90
ACGTcount: A:0.37, C:0.18, G:0.20, T:0.25
Consensus pattern (54 bp):
CAAAATACCTCTGTAGGGTAGAATTACCGAAATACCCTTGTAGGGTAGAATTAC
Found at i:91207748 original size:81 final size:80
Alignment explanation
Indices: 91207597--91207755 Score: 221
Period size: 81 Copynumber: 2.0 Consensus size: 80
91207587 TAAAATATCA
* * *
91207597 AAATACCTTGTAGGGTAGAAATACCGAAATACCCTTGTAGGGTAGAATTACTAAAATACCTCTAT
1 AAATACCTTGTAGGGTAGAAATACCGAAATACCCCTGTAGGATAGAATTACCAAAATACCTCTAT
*
91207662 AGGGTAGAATTACTG
66 AGGGTAAAATTACTG
* *
91207677 AAATACCCTTGTAGGGTAGAAATACCGAAATACCCCTGTAGGATAGAATTACCGAGATACC-CTT
1 AAATA-CCTTGTAGGGTAGAAATACCGAAATACCCCTGTAGGATAGAATTACCAAAATACCTC-T
* *
91207741 GTGGGGTAAAATTAC
64 ATAGGGTAAAATTAC
91207756 CATTTTACCC
Statistics
Matches: 69, Mismatches: 8, Indels: 3
0.86 0.10 0.04
Matches are distributed among these distances:
80 6 0.09
81 63 0.91
ACGTcount: A:0.36, C:0.17, G:0.21, T:0.26
Consensus pattern (80 bp):
AAATACCTTGTAGGGTAGAAATACCGAAATACCCCTGTAGGATAGAATTACCAAAATACCTCTAT
AGGGTAAAATTACTG
Found at i:91208235 original size:22 final size:22
Alignment explanation
Indices: 91208183--91208247 Score: 69
Period size: 22 Copynumber: 3.0 Consensus size: 22
91208173 TTAAAGCCTT
* *
91208183 CTGATTATGGCTTTGTGTCAAC
1 CTGATTATGGCTCTGTGCCAAC
*
91208205 CT-ACATATGGCTCTGTGCCAAC
1 CTGA-TTATGGCTCTGTGCCAAC
* *
91208227 CTGATTATGGTTGTGTGCCAA
1 CTGATTATGGCTCTGTGCCAA
91208248 ATGTATTTGC
Statistics
Matches: 35, Mismatches: 6, Indels: 4
0.78 0.13 0.09
Matches are distributed among these distances:
21 1 0.03
22 33 0.94
23 1 0.03
ACGTcount: A:0.20, C:0.22, G:0.23, T:0.35
Consensus pattern (22 bp):
CTGATTATGGCTCTGTGCCAAC
Found at i:91208436 original size:27 final size:27
Alignment explanation
Indices: 91208406--91208507 Score: 116
Period size: 27 Copynumber: 3.8 Consensus size: 27
91208396 ATTCTGTTAA
*
91208406 GTGGCTTTGCCACATTATCTGTTTCTG
1 GTGGCTTTGCCACAATATCTGTTTCTG
* *
91208433 GTGGCTATGCCACAAATATCT-ATTCTG
1 GTGGCTTTGCCAC-AATATCTGTTTCTG
* * *
91208460 GTGGCTCTGCCACAATATCTATATCTG
1 GTGGCTTTGCCACAATATCTGTTTCTG
* *
91208487 GTGACTTTGTCACAATATCTG
1 GTGGCTTTGCCACAATATCTG
91208508 ATAACTGAGC
Statistics
Matches: 63, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
26 7 0.11
27 50 0.79
28 6 0.10
ACGTcount: A:0.21, C:0.23, G:0.20, T:0.37
Consensus pattern (27 bp):
GTGGCTTTGCCACAATATCTGTTTCTG
Found at i:91210133 original size:79 final size:80
Alignment explanation
Indices: 91209949--91210173 Score: 260
Period size: 79 Copynumber: 2.8 Consensus size: 80
91209939 GCTACTCGTT
* * * * * *
91209949 CAAATGCCTTCGGGACATAGCCCAGTTATAGTAACTCGCACAAATGCCTTCCGGACTTAGCCCGG
1 CAAATGCCTTCGGGACTTACCCCGGATATAGTAACTCGCACCAATGCCTT-CGGGCTTAGCCCGG
*
91210014 -TTATAGTAACTCGCA
65 AATATAGTAACTCGCA
*
91210029 CAAATGCCTTCGGGACTTACCCCGGATTTAGTAACTCGCACCAATGCCTTCGGGCTTAGCCCGGA
1 CAAATGCCTTCGGGACTTACCCCGGATATAGTAACTCGCACCAATGCCTTCGGGCTTAGCCCGGA
91210094 AT-TAGTAACTCGCA
66 ATATAGTAACTCGCA
** * * * *
91210108 CAAATGCCTTC-GGATCTTATTCCGGATATGGTCACTTAGCA-CAAAGCCTTCGGGACTTAGCCC
1 CAAATGCCTTCGGGA-CTTACCCCGGATATAGTAAC-TCGCACCAATGCCTTCGGG-CTTAGCCC
91210171 GGA
63 GGA
91210174 CATCATTCGA
Statistics
Matches: 126, Mismatches: 15, Indels: 8
0.85 0.10 0.05
Matches are distributed among these distances:
78 3 0.02
79 63 0.50
80 60 0.48
ACGTcount: A:0.25, C:0.29, G:0.21, T:0.24
Consensus pattern (80 bp):
CAAATGCCTTCGGGACTTACCCCGGATATAGTAACTCGCACCAATGCCTTCGGGCTTAGCCCGGA
ATATAGTAACTCGCA
Found at i:91210157 original size:119 final size:120
Alignment explanation
Indices: 91209951--91210173 Score: 301
Period size: 119 Copynumber: 1.9 Consensus size: 120
91209941 TACTCGTTCA
* *
91209951 AATGCCTTCGGGACATAGCCCAGTTATAGTAACTCGCACAAATGCCTTCCGGACTTAGCCCGGTT
1 AATGCCTTCGGGACATAGCCCAGATATAGTAACTCGCACAAATGCCTTCCGGACTTAGCCCGGAT
*
91210016 ATAGTAACTCGCACAAATGCCTTCGGGACTTACCCCGGATTTAGTAACTCGCACC
66 ATAGTAACTAGCACAAATGCCTTCGGGACTTACCCCGGATTTAGTAACTCGCACC
* * **
91210071 AATGCCTTCGGG-CTTAGCCCGGA-ATTAGTAACTCGCACAAATGCCTT-CGGATCTTATTCCGG
1 AATGCCTTCGGGACATAGCCCAGATA-TAGTAACTCGCACAAATGCCTTCCGGA-CTTAGCCCGG
* * *
91210133 ATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGCCCGGA
64 ATATAGTAAC-TAGCACAAATGCCTTCGGGACTTACCCCGGA
91210174 CATCATTCGA
Statistics
Matches: 90, Mismatches: 10, Indels: 7
0.84 0.09 0.07
Matches are distributed among these distances:
118 5 0.06
119 65 0.72
120 20 0.22
ACGTcount: A:0.25, C:0.29, G:0.22, T:0.25
Consensus pattern (120 bp):
AATGCCTTCGGGACATAGCCCAGATATAGTAACTCGCACAAATGCCTTCCGGACTTAGCCCGGAT
ATAGTAACTAGCACAAATGCCTTCGGGACTTACCCCGGATTTAGTAACTCGCACC
Found at i:91210173 original size:40 final size:40
Alignment explanation
Indices: 91209930--91210173 Score: 282
Period size: 40 Copynumber: 6.1 Consensus size: 40
91209920 CGGAATTTAA
** *
91209930 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* * *
91209970 CCAGTTATAGTAACTCGCACAAATGCCTTCCGGACTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
91210010 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTACC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
91210050 CCGGATTTAGTAACTCGCACCAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
**
91210089 CCGGA-ATTAGTAACTCGCACAAATGCCTTC-GGATCTTATT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
91210129 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
91210169 CCGGA
1 CCGGA
91210174 CATCATTCGA
Statistics
Matches: 175, Mismatches: 22, Indels: 14
0.83 0.10 0.07
Matches are distributed among these distances:
38 2 0.01
39 33 0.19
40 128 0.73
41 12 0.07
ACGTcount: A:0.25, C:0.29, G:0.21, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:91213106 original size:28 final size:28
Alignment explanation
Indices: 91213066--91213120 Score: 76
Period size: 28 Copynumber: 2.0 Consensus size: 28
91213056 CAGTGCTGTC
*
91213066 TGGGCCTTAGCCCTAA-ACAGAAACAGTG
1 TGGGCCTAAGCCC-AATACAGAAACAGTG
*
91213094 TGGGCCTAAGCCCAATACAGAATCAGT
1 TGGGCCTAAGCCCAATACAGAAACAGT
91213121 ACAGAGCAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
27 2 0.08
28 22 0.92
ACGTcount: A:0.33, C:0.25, G:0.24, T:0.18
Consensus pattern (28 bp):
TGGGCCTAAGCCCAATACAGAAACAGTG
Found at i:91213261 original size:27 final size:27
Alignment explanation
Indices: 91213231--91213304 Score: 96
Period size: 27 Copynumber: 2.8 Consensus size: 27
91213221 CAATATCGCA
**
91213231 GCAAAGCTGCCAGTAACAGTAAATGTG
1 GCAAAGCCACCAGTAACAGTAAATGTG
**
91213258 GCAAAGCCACCAGTAACAGTAGTTGTG
1 GCAAAGCCACCAGTAACAGTAAATGTG
*
91213285 GCAAAGCCACCGGT-ACAGTA
1 GCAAAGCCACCAGTAACAGTA
91213305 CTTCCTCCAA
Statistics
Matches: 42, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
26 6 0.14
27 36 0.86
ACGTcount: A:0.35, C:0.23, G:0.26, T:0.16
Consensus pattern (27 bp):
GCAAAGCCACCAGTAACAGTAAATGTG
Found at i:91215631 original size:40 final size:41
Alignment explanation
Indices: 91215547--91215640 Score: 115
Period size: 40 Copynumber: 2.3 Consensus size: 41
91215537 GTCAGTATCG
* *
91215547 CACACTTAGTGCC-TTATATAGCCGAAGATATGCCAACTCG
1 CACACTTAGTGCCATTATATAGCCGAAGATATGCAAACTCA
*
91215587 CACACTTAGTGCCATT-TATAGCCGAAGCTATAT-TAAAC-CA
1 CACACTTAGTGCCATTATATAGCCGAAG--ATATGCAAACTCA
91215627 CACACTTAGTGCCA
1 CACACTTAGTGCCA
91215641 ATTGTAGTCG
Statistics
Matches: 48, Mismatches: 3, Indels: 6
0.84 0.05 0.11
Matches are distributed among these distances:
40 39 0.81
41 5 0.10
42 4 0.08
ACGTcount: A:0.32, C:0.28, G:0.15, T:0.26
Consensus pattern (41 bp):
CACACTTAGTGCCATTATATAGCCGAAGATATGCAAACTCA
Found at i:91218404 original size:18 final size:18
Alignment explanation
Indices: 91218381--91218418 Score: 67
Period size: 18 Copynumber: 2.1 Consensus size: 18
91218371 CGGATGATAA
*
91218381 TCAATTACAAGTTTGTAG
1 TCAATTACAAGTTCGTAG
91218399 TCAATTACAAGTTCGTAG
1 TCAATTACAAGTTCGTAG
91218417 TC
1 TC
91218419 TTTTAATAGT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.37
Consensus pattern (18 bp):
TCAATTACAAGTTCGTAG
Found at i:91229725 original size:62 final size:60
Alignment explanation
Indices: 91229628--91229766 Score: 154
Period size: 62 Copynumber: 2.3 Consensus size: 60
91229618 GATCAGCCAA
* * * * * *
91229628 CTCGCACACTCAATGCTAAATCTTTGTAATGTATCGCACACTTAGTGCCATTACATTAACAT
1 CTCGCACACTTAGTGCTAAATCTTTG-AACGTATCGCACACTCAGTGCCATCACATTAAC-C
* * *
91229690 CTCGCACACTTAGTGCTAAAATCTTATG-ACGTATCGCACACTCAGTGCCGTCACTTTATCC
1 CTCGCACACTTAGTGCT-AAATCTT-TGAACGTATCGCACACTCAGTGCCATCACATTAACC
91229751 CTCGCACACTTAGTGC
1 CTCGCACACTTAGTGC
91229767 CATATTTCTT
Statistics
Matches: 66, Mismatches: 9, Indels: 5
0.82 0.11 0.06
Matches are distributed among these distances:
61 16 0.24
62 41 0.62
63 7 0.11
64 2 0.03
ACGTcount: A:0.27, C:0.29, G:0.14, T:0.30
Consensus pattern (60 bp):
CTCGCACACTTAGTGCTAAATCTTTGAACGTATCGCACACTCAGTGCCATCACATTAACC
Found at i:91231878 original size:40 final size:41
Alignment explanation
Indices: 91231794--91231886 Score: 120
Period size: 40 Copynumber: 2.3 Consensus size: 41
91231784 TTGGTATCAC
** *
91231794 ACACTTAGTGCC-TTATATAGCCGAAGCTATGCCAACTCGC
1 ACACTTAGTGCCATTATATAGCCGAAGCTATGAAAACTCGA
*
91231834 ACACTTAGTGCCATT-TATAGCCGAAGCTATATAAAAC-CGA
1 ACACTTAGTGCCATTATATAGCCGAAGCTAT-GAAAACTCGA
91231874 ACACTTAGTGCCA
1 ACACTTAGTGCCA
91231887 ATCGTAGTCG
Statistics
Matches: 47, Mismatches: 4, Indels: 4
0.85 0.07 0.07
Matches are distributed among these distances:
40 42 0.89
41 5 0.11
ACGTcount: A:0.32, C:0.27, G:0.16, T:0.25
Consensus pattern (41 bp):
ACACTTAGTGCCATTATATAGCCGAAGCTATGAAAACTCGA
Found at i:91232655 original size:26 final size:26
Alignment explanation
Indices: 91232615--91232664 Score: 64
Period size: 26 Copynumber: 1.9 Consensus size: 26
91232605 CATCTTTTTG
*
91232615 TTTTATTATTATAACATTTATATTCA
1 TTTTACTATTATAACATTTATATTCA
* * *
91232641 TTTTACTATTTTAACCTTTTTATT
1 TTTTACTATTATAACATTTATATT
91232665 ATCATTAGAA
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
26 20 1.00
ACGTcount: A:0.28, C:0.10, G:0.00, T:0.62
Consensus pattern (26 bp):
TTTTACTATTATAACATTTATATTCA
Found at i:91247829 original size:21 final size:22
Alignment explanation
Indices: 91247803--91247843 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
91247793 TGCTTGACAC
91247803 AGGGGC-ACACGCCCGTGTGGG
1 AGGGGCAACACGCCCGTGTGGG
*
91247824 AGGGGCAACATGCCCGTGTG
1 AGGGGCAACACGCCCGTGTG
91247844 AGCATTCCAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 6 0.33
22 12 0.67
ACGTcount: A:0.17, C:0.27, G:0.44, T:0.12
Consensus pattern (22 bp):
AGGGGCAACACGCCCGTGTGGG
Found at i:91250121 original size:35 final size:35
Alignment explanation
Indices: 91250082--91250154 Score: 146
Period size: 35 Copynumber: 2.1 Consensus size: 35
91250072 ACACATTCTT
91250082 TATTCTCGTCAGATCAATCTCACATAAATAATATA
1 TATTCTCGTCAGATCAATCTCACATAAATAATATA
91250117 TATTCTCGTCAGATCAATCTCACATAAATAATATA
1 TATTCTCGTCAGATCAATCTCACATAAATAATATA
91250152 TAT
1 TAT
91250155 ATCACATACC
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 38 1.00
ACGTcount: A:0.40, C:0.19, G:0.05, T:0.36
Consensus pattern (35 bp):
TATTCTCGTCAGATCAATCTCACATAAATAATATA
Found at i:91253057 original size:30 final size:30
Alignment explanation
Indices: 91253016--91253094 Score: 122
Period size: 30 Copynumber: 2.6 Consensus size: 30
91253006 AAATTGGGCT
* * *
91253016 AAATTACCATTTTGCCCCTAGACTTTTGCA
1 AAATGACCATTTTACCCCTAGACATTTGCA
*
91253046 AAATGACCATTTTACCCTTAGACATTTGCA
1 AAATGACCATTTTACCCCTAGACATTTGCA
91253076 AAATGACCATTTTACCCCT
1 AAATGACCATTTTACCCCT
91253095 TGACCTGAAA
Statistics
Matches: 44, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 44 1.00
ACGTcount: A:0.30, C:0.27, G:0.09, T:0.34
Consensus pattern (30 bp):
AAATGACCATTTTACCCCTAGACATTTGCA
Found at i:91255989 original size:47 final size:47
Alignment explanation
Indices: 91255937--91256197 Score: 378
Period size: 47 Copynumber: 5.6 Consensus size: 47
91255927 GATAATTGTG
* * *
91255937 ATGTGAATGTATATATATGTGATAAGGCCTAATGGCTGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
91255984 ATGTGAAAGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
**
91256031 ATGTGAAAGTGTATATATGTGATAAGGCCTAATATCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
91256078 ATGTGAAAGTGTATATATGTGATGAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* * * * * * * *
91256125 GTGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATGG
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
91256172 ATGTGAAAGTGTATAAATGTGATAAG
1 ATGTGAAAGTGTATATATGTGATAAG
91256198 TCCCGAAGGG
Statistics
Matches: 193, Mismatches: 21, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
47 193 1.00
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.30
Consensus pattern (47 bp):
ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
Found at i:91270430 original size:20 final size:20
Alignment explanation
Indices: 91270389--91270431 Score: 52
Period size: 20 Copynumber: 2.1 Consensus size: 20
91270379 CAAAACTTAC
**
91270389 TTTCAAGTTTTGTTGAATAT
1 TTTCAAGTTTTAATGAATAT
91270409 TTTCAATGTTTTAATGAA-AT
1 TTTCAA-GTTTTAATGAATAT
91270429 TTT
1 TTT
91270432 TTGAAAATTT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
20 11 0.55
21 9 0.45
ACGTcount: A:0.28, C:0.05, G:0.12, T:0.56
Consensus pattern (20 bp):
TTTCAAGTTTTAATGAATAT
Found at i:91272971 original size:25 final size:25
Alignment explanation
Indices: 91272933--91273049 Score: 146
Period size: 25 Copynumber: 4.6 Consensus size: 25
91272923 TTATTATGCA
91272933 CTAACTAATCAGAGAGCACTAACGTG
1 CTAA-TAATCAGAGAGCACTAACGTG
* *
91272959 CTAATAATTAGAGAGCAC-AGATGTG
1 CTAATAATCAGAGAGCACTA-ACGTG
* * *
91272984 CTAATGATCAGAGAGCACTGACATG
1 CTAATAATCAGAGAGCACTAACGTG
* *
91273009 CTAATAATCAGAGAGCACTGACGTA
1 CTAATAATCAGAGAGCACTAACGTG
91273034 CTAATAATCAGAGAGC
1 CTAATAATCAGAGAGC
91273050 GCGCTAAGGT
Statistics
Matches: 79, Mismatches: 10, Indels: 5
0.84 0.11 0.05
Matches are distributed among these distances:
24 1 0.01
25 74 0.94
26 4 0.05
ACGTcount: A:0.39, C:0.19, G:0.21, T:0.21
Consensus pattern (25 bp):
CTAATAATCAGAGAGCACTAACGTG
Found at i:91273011 original size:50 final size:50
Alignment explanation
Indices: 91272932--91273049 Score: 164
Period size: 50 Copynumber: 2.3 Consensus size: 50
91272922 ATTATTATGC
* * *
91272932 ACTAACTAATCAGAGAGCACTAACGTGCTAATAATTAGAGAGCACAGATGT
1 ACTAA-TAATCAGAGAGCACTAACATGCTAATAATCAGAGAGCACAGACGT
* * * *
91272983 GCTAATGATCAGAGAGCACTGACATGCTAATAATCAGAGAGCACTGACGT
1 ACTAATAATCAGAGAGCACTAACATGCTAATAATCAGAGAGCACAGACGT
91273033 ACTAATAATCAGAGAGC
1 ACTAATAATCAGAGAGC
91273050 GCGCTAAGGT
Statistics
Matches: 58, Mismatches: 9, Indels: 1
0.85 0.13 0.01
Matches are distributed among these distances:
50 54 0.93
51 4 0.07
ACGTcount: A:0.40, C:0.19, G:0.21, T:0.20
Consensus pattern (50 bp):
ACTAATAATCAGAGAGCACTAACATGCTAATAATCAGAGAGCACAGACGT
Found at i:91274529 original size:3 final size:3
Alignment explanation
Indices: 91274521--91274556 Score: 72
Period size: 3 Copynumber: 12.0 Consensus size: 3
91274511 TCTTTAATTT
91274521 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
91274557 CCAATGTCAT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 33 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:91276868 original size:43 final size:43
Alignment explanation
Indices: 91276810--91277024 Score: 229
Period size: 43 Copynumber: 5.0 Consensus size: 43
91276800 ACATATCGTA
* * * *
91276810 CAATGCCAACGTCCCAGACGTGGTCTTCCATGTA-ATCACATAT
1 CAATGCTAACATCCCAGACGTGGTCTTACATG-AGAACACATAT
* * * * * *
91276853 CGATGC-CACTATCCCATACAG-AGTCTTACACGAGAAAACATAT
1 CAATGCTAAC-ATCCCAGAC-GTGGTCTTACATGAGAACACATAT
* *
91276896 CGATGCCAACATCCCAGACGTGGTCTTACATGAGAACACATAT
1 CAATGCTAACATCCCAGACGTGGTCTTACATGAGAACACATAT
* *
91276939 CAATGCTAACGTCCCAGACGTGGTCTTGCATGAGAACACATAT
1 CAATGCTAACATCCCAGACGTGGTCTTACATGAGAACACATAT
* * *
91276982 CAATGCTAACGTCCCAGACGTGGTCTTATACGAGAACACATAT
1 CAATGCTAACATCCCAGACGTGGTCTTACATGAGAACACATAT
91277025 AGGAATCCTA
Statistics
Matches: 146, Mismatches: 21, Indels: 10
0.82 0.12 0.06
Matches are distributed among these distances:
42 4 0.03
43 139 0.95
44 3 0.02
ACGTcount: A:0.32, C:0.27, G:0.18, T:0.23
Consensus pattern (43 bp):
CAATGCTAACATCCCAGACGTGGTCTTACATGAGAACACATAT
Found at i:91278167 original size:14 final size:15
Alignment explanation
Indices: 91278150--91278178 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
91278140 ACACGAAAAT
91278150 TTCACACAT-ATAAA
1 TTCACACATAATAAA
91278164 TTCACACATAATAAA
1 TTCACACATAATAAA
91278179 CATAGAAAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 9 0.64
15 5 0.36
ACGTcount: A:0.52, C:0.21, G:0.00, T:0.28
Consensus pattern (15 bp):
TTCACACATAATAAA
Found at i:91283945 original size:16 final size:17
Alignment explanation
Indices: 91283914--91283946 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
91283904 TTCATAAGTA
91283914 TATATCAATCATTTCAT
1 TATATCAATCATTTCAT
91283931 TATATCAAT-ATTTCAT
1 TATATCAATCATTTCAT
91283947 GCTCCATCAT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 7 0.44
17 9 0.56
ACGTcount: A:0.36, C:0.15, G:0.00, T:0.48
Consensus pattern (17 bp):
TATATCAATCATTTCAT
Found at i:91284304 original size:46 final size:46
Alignment explanation
Indices: 91284232--91284643 Score: 549
Period size: 46 Copynumber: 9.0 Consensus size: 46
91284222 TTTGACATGA
* * * * *
91284232 TGCCATAGTGTCTTTTAACTATGGTCTTACTCATTTTC-TATCATGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCA-TTTCATATCAGGT
* * * ***
91284278 TGCCATGGTATATTTCAACCATGGTCTTATTCATTTCATGTCACAC
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATATCAGGT
* *** *
91284324 TGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCCCCTCATGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATATCAGGT
* *
91284370 TGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATATCACGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATATCAGGT
* *
91284416 TGCCATGGCATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATATCAGGT
* * *
91284462 TGCCATGGTATCTTTCAACAATGGTCTTACACATTTCATATTAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATATCAGGT
*
91284508 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATATCAGGT
*
91284554 TGCCATGGTATCTTTCAACCATGGTCTTA-TACATTTCATATTAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACT-CATTTCATATCAGGT
* *
91284600 TGCCATGGTATCTTTCAACCATGGTCTTCCTCGTTTCATATCAG
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATATCAG
91284644 AGAGCACACT
Statistics
Matches: 328, Mismatches: 35, Indels: 6
0.89 0.09 0.02
Matches are distributed among these distances:
45 4 0.01
46 323 0.98
47 1 0.00
ACGTcount: A:0.22, C:0.24, G:0.14, T:0.40
Consensus pattern (46 bp):
TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATATCAGGT
Found at i:91287488 original size:26 final size:29
Alignment explanation
Indices: 91287451--91287504 Score: 78
Period size: 27 Copynumber: 2.0 Consensus size: 29
91287441 TTGAAATCAT
91287451 CTTTTCCAAAA-CCAAATTTT-AGAAAAA
1 CTTTTCCAAAACCCAAATTTTGAGAAAAA
*
91287478 CTTTT-CAAAACCCTAATTTTGAGAAAA
1 CTTTTCCAAAACCCAAATTTTGAGAAAA
91287505 GATTTCAGAA
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
26 5 0.21
27 13 0.54
28 6 0.25
ACGTcount: A:0.44, C:0.19, G:0.06, T:0.31
Consensus pattern (29 bp):
CTTTTCCAAAACCCAAATTTTGAGAAAAA
Found at i:91288406 original size:28 final size:26
Alignment explanation
Indices: 91288343--91288408 Score: 71
Period size: 28 Copynumber: 2.4 Consensus size: 26
91288333 AACAGAGCTG
91288343 CTAATAATAGTAAATTTGGCAAAGCCA
1 CTAAT-ATAGTAAATTTGGCAAAGCCA
* *
91288370 CCAGA-ATAGTAATTTCGTGGCAAAGCCA
1 CTA-ATATAGTAAATT--TGGCAAAGCCA
91288398 CTAATATAGTA
1 CTAATATAGTA
91288409 CTTCCTCCAA
Statistics
Matches: 32, Mismatches: 3, Indels: 7
0.76 0.07 0.17
Matches are distributed among these distances:
26 9 0.28
27 3 0.09
28 20 0.62
ACGTcount: A:0.41, C:0.17, G:0.17, T:0.26
Consensus pattern (26 bp):
CTAATATAGTAAATTTGGCAAAGCCA
Found at i:91299084 original size:14 final size:13
Alignment explanation
Indices: 91299064--91299095 Score: 55
Period size: 14 Copynumber: 2.4 Consensus size: 13
91299054 AATATTTGAC
91299064 TTGTTCTTAATTA
1 TTGTTCTTAATTA
91299077 TGTGTTCTTAATTA
1 T-TGTTCTTAATTA
91299091 TTGTT
1 TTGTT
91299096 TTGATATTTC
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 5 0.28
14 13 0.72
ACGTcount: A:0.19, C:0.06, G:0.12, T:0.62
Consensus pattern (13 bp):
TTGTTCTTAATTA
Found at i:91302331 original size:13 final size:14
Alignment explanation
Indices: 91302311--91302345 Score: 54
Period size: 13 Copynumber: 2.6 Consensus size: 14
91302301 CAATTAAAAA
*
91302311 ATAAACATATCAAT
1 ATAAACATATAAAT
91302325 A-AAACATATAAAT
1 ATAAACATATAAAT
91302338 ATAAACAT
1 ATAAACAT
91302346 GGTCAAAATG
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
13 12 0.63
14 7 0.37
ACGTcount: A:0.63, C:0.11, G:0.00, T:0.26
Consensus pattern (14 bp):
ATAAACATATAAAT
Found at i:91303700 original size:43 final size:43
Alignment explanation
Indices: 91303621--91303714 Score: 118
Period size: 43 Copynumber: 2.2 Consensus size: 43
91303611 TACATGTAAT
* * *
91303621 CACATATCGATGCCACTGTCCCAGATAGGGTTTTACACGAGAA
1 CACATATCGATGCCAATGTCCCAGACAGGGTTTTACACAAGAA
* * *
91303664 CACATATCGATGCCAATGTTCCTGACA-TGTTCTTACACAAGAA
1 CACATATCGATGCCAATGTCCCAGACAGGGTT-TTACACAAGAA
91303707 CACATATC
1 CACATATC
91303715 AGAAATCCTA
Statistics
Matches: 44, Mismatches: 6, Indels: 2
0.85 0.12 0.04
Matches are distributed among these distances:
42 3 0.07
43 41 0.93
ACGTcount: A:0.32, C:0.27, G:0.16, T:0.26
Consensus pattern (43 bp):
CACATATCGATGCCAATGTCCCAGACAGGGTTTTACACAAGAA
Done.