Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A06
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 115140250
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2234201 characters in sequence are not A, C, G, or T
File 268 of 345
Found at i:91308560 original size:47 final size:47
Alignment explanation
Indices: 91308437--91308950 Score: 715
Period size: 47 Copynumber: 11.0 Consensus size: 47
91308427 TTAGGATTTT
** *
91308437 ATGTGATGAATGTGAATGTGTATATATGTGATAAGG-CGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * *
91308483 ATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCTGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * *
91308530 ATGTGGTGAATATGAACATGTATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * *
91308577 ATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCTGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * *
91308624 ATGTGGTGAATATGAACATGTATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * *
91308671 ATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCAAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * *
91308718 ATGTGGTGAATATGAACATGCATATATGTGATAAGGCCGAATGGCCT
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
91308765 ATGTGATGAATGTGAACATGTATATATGTGATGAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * *
91308812 ATGTGATAAATGTGAGCATGCATATATATGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * *
91308859 ATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCGAATAGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * * **
91308906 ATGTGGTGAATATGAACATGCATATATGTGGTAAAACCGAATGGC
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGC
91308951 TAGTGTGAAA
Statistics
Matches: 409, Mismatches: 58, Indels: 1
0.87 0.12 0.00
Matches are distributed among these distances:
46 31 0.08
47 378 0.92
ACGTcount: A:0.33, C:0.11, G:0.29, T:0.27
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
Found at i:91308958 original size:94 final size:94
Alignment explanation
Indices: 91308458--91308950 Score: 808
Period size: 94 Copynumber: 5.3 Consensus size: 94
91308448 GTGAATGTGT
*
91308458 ATATATGTGATAAGG-CGAATGGCCAATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCTG
1 ATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCG
*
91308522 AATGGCCAATGTGGTGAATATGAACATGT
66 AATGGCCAATGTGGTGAATATGAACATGC
*
91308551 ATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCTG
1 ATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCG
*
91308616 AATGGCCAATGTGGTGAATATGAACATGT
66 AATGGCCAATGTGGTGAATATGAACATGC
*
91308645 ATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCA
1 ATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCG
91308710 AATGGCCAATGTGGTGAATATGAACATGC
66 AATGGCCAATGTGGTGAATATGAACATGC
* * * * *
91308739 ATATATGTGATAAGGCCGAATGGCCTATGTGATGAATGTGAACATGTATATATGTGATGAGGCCG
1 ATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCG
* * * *
91308804 AATGGCCAATGTGATAAATGTGAGCATGC
66 AATGGCCAATGTGGTGAATATGAACATGC
*
91308833 ATATATATGATAAGGCCGAATGGCCAATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCG
1 ATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCG
*
91308898 AATAGCCAATGTGGTGAATATGAACATGC
66 AATGGCCAATGTGGTGAATATGAACATGC
* **
91308927 ATATATGTGGTAAAACCGAATGGC
1 ATATATGTGATAAGGCCGAATGGC
91308951 TAGTGTGAAA
Statistics
Matches: 371, Mismatches: 28, Indels: 1
0.93 0.07 0.00
Matches are distributed among these distances:
93 15 0.04
94 356 0.96
ACGTcount: A:0.33, C:0.12, G:0.29, T:0.27
Consensus pattern (94 bp):
ATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCG
AATGGCCAATGTGGTGAATATGAACATGC
Found at i:91309171 original size:37 final size:37
Alignment explanation
Indices: 91309113--91309258 Score: 229
Period size: 37 Copynumber: 3.9 Consensus size: 37
91309103 GGAAATATAT
* * *
91309113 TCCGGGTGAGACCCGATGACTACGTGTGGAGAGTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
*
91309150 TCTGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
*
91309187 CCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
* *
91309224 TCCGGGTAAGACCCGATAACTTCGTGTGGAGATTT
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTT
91309259 CGTCTGAGCT
Statistics
Matches: 100, Mismatches: 9, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
37 100 1.00
ACGTcount: A:0.22, C:0.19, G:0.33, T:0.26
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
Found at i:91310402 original size:21 final size:22
Alignment explanation
Indices: 91310357--91310402 Score: 58
Period size: 22 Copynumber: 2.1 Consensus size: 22
91310347 TTTCTTCAAC
**
91310357 TTTCAAGCTTCATTGTAAGTGA
1 TTTCAAGCCCCATTGTAAGTGA
*
91310379 TTTCAAGCCCCATTTTAA-TGA
1 TTTCAAGCCCCATTGTAAGTGA
91310400 TTT
1 TTT
91310403 TTATGTTTTT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
21 6 0.29
22 15 0.71
ACGTcount: A:0.26, C:0.17, G:0.13, T:0.43
Consensus pattern (22 bp):
TTTCAAGCCCCATTGTAAGTGA
Found at i:91311459 original size:49 final size:50
Alignment explanation
Indices: 91311298--91311481 Score: 181
Period size: 50 Copynumber: 3.7 Consensus size: 50
91311288 AAAACTATAC
* ** * * * **
91311298 GTACTAAGTGCAGGCTACTATGCATACCCGATAACTTCGATCATGTGTGTA
1 GTACTAAGTGCAGGCTACTACGTGTACCAGATAA-TTAGGTCACATGTGTA
* * ** **
91311349 GTACTAAGTGTAGGCTACTACGTGTATCAGATGGTTAGGTCATGTGTGTA
1 GTACTAAGTGCAGGCTACTACGTGTACCAGATAATTAGGTCACATGTGTA
* *
91311399 GTACTAAGTGCAGGCTACTACGTGTACCGGATAATT-GGTCGCATGTGTA
1 GTACTAAGTGCAGGCTACTACGTGTACCAGATAATTAGGTCACATGTGTA
* * *
91311448 GTACTATGTGCAGGCTACTATGCGTACCAGATAA
1 GTACTAAGTGCAGGCTACTACGTGTACCAGATAA
91311482 CCTTGTCTAC
Statistics
Matches: 111, Mismatches: 22, Indels: 2
0.82 0.16 0.01
Matches are distributed among these distances:
49 40 0.36
50 45 0.41
51 26 0.23
ACGTcount: A:0.26, C:0.18, G:0.26, T:0.30
Consensus pattern (50 bp):
GTACTAAGTGCAGGCTACTACGTGTACCAGATAATTAGGTCACATGTGTA
Found at i:91313949 original size:47 final size:46
Alignment explanation
Indices: 91313832--91313959 Score: 157
Period size: 46 Copynumber: 2.8 Consensus size: 46
91313822 GTGTGAATAA
* * * *
91313832 TACCTTATTTGGCTACGGGCCATGATATAGGTATTTTGAGAGGAGT
1 TACCTTATTTGGCTACGGGCCATGGTATAGGTACTCTGAGAGAAGT
** * * *
91313878 TATTTTATTTGGCTACGGGTCATGGTATAGGTACTCTGGGATAAGT
1 TACCTTATTTGGCTACGGGCCATGGTATAGGTACTCTGAGAGAAGT
*
91313924 TACCTTGATTTGGGTACGGGCCATGGTATAGGTACT
1 TACCTT-ATTTGGCTACGGGCCATGGTATAGGTACT
91313960 TATCAATTGT
Statistics
Matches: 68, Mismatches: 13, Indels: 1
0.83 0.16 0.01
Matches are distributed among these distances:
46 41 0.60
47 27 0.40
ACGTcount: A:0.22, C:0.13, G:0.29, T:0.36
Consensus pattern (46 bp):
TACCTTATTTGGCTACGGGCCATGGTATAGGTACTCTGAGAGAAGT
Found at i:91316816 original size:37 final size:37
Alignment explanation
Indices: 91316757--91316865 Score: 182
Period size: 37 Copynumber: 2.9 Consensus size: 37
91316747 AGCTCAGACG
* * *
91316757 AAATCTCCACATGAAGTTATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
91316794 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACG
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
91316831 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
91316866 ATATATTTCC
Statistics
Matches: 68, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 68 1.00
ACGTcount: A:0.27, C:0.30, G:0.20, T:0.23
Consensus pattern (37 bp):
AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
Found at i:91317062 original size:46 final size:46
Alignment explanation
Indices: 91317009--91317237 Score: 136
Period size: 47 Copynumber: 4.9 Consensus size: 46
91316999 TATATATACA
* * *
91317009 CATCTCATACATATCTCACATTAGCCATTTGGCTTTACCACATATC
1 CATCTCATACACATCTCACATTAGCCATTCGGCCTTACCACATATC
* * *
91317055 CATCTCATACACGTTTCGCATTAGCCATTCGGCCTTACCACATAT-
1 CATCTCATACACATCTCACATTAGCCATTCGGCCTTACCACATATC
* * * *
91317100 -AT-TCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCTCATATATG
1 CATCTCA--TACACA-TC-TCACATTAGCCATTCGGCCTTA-C-CACATATC
* *
91317150 CATGT--T-CACATTCATCACATTGGCCATTCGGCCTTATCACACATA-C
1 CATCTCATACACA-TC-TCACATTAGCCATTCGGCCTTA-C-CACATATC
* * *
91317196 GCATGT--T-CACATTCATCACATTGGCCATTCGGCCTTATCACA
1 -CATCTCATACACA-TC-TCACATTAGCCATTCGGCCTTACCACA
91317238 CATACGCATG
Statistics
Matches: 157, Mismatches: 16, Indels: 21
0.81 0.08 0.11
Matches are distributed among these distances:
43 3 0.02
44 2 0.01
45 8 0.05
46 40 0.25
47 93 0.59
48 2 0.01
49 6 0.04
51 2 0.01
52 1 0.01
ACGTcount: A:0.25, C:0.31, G:0.11, T:0.33
Consensus pattern (46 bp):
CATCTCATACACATCTCACATTAGCCATTCGGCCTTACCACATATC
Found at i:91317135 original size:47 final size:47
Alignment explanation
Indices: 91317073--91317457 Score: 554
Period size: 47 Copynumber: 8.1 Consensus size: 47
91317063 ACACGTTTCG
* * * **
91317073 CATTAGCCATTCGGCCTTACCACATATATTCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
* * *
91317120 CATTGGCCATTCGGCCTTATCTCATATATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
91317167 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
91317214 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
* * * ** *
91317261 CATTGGCCATTCAGCATTATCACGCATATATATATACAGGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCA--C----ACATACGCATGTTCACATTCATCA
*
91317314 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATCCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
*
91317361 CATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
* *
91317408 CATTGGCCATTCGGCCTTATCACACATACACATGTTCACATCCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
91317455 CAT
1 CAT
91317458 AAAATCCTAA
Statistics
Matches: 307, Mismatches: 25, Indels: 12
0.89 0.07 0.03
Matches are distributed among these distances:
47 265 0.86
49 1 0.00
51 1 0.00
53 40 0.13
ACGTcount: A:0.27, C:0.30, G:0.12, T:0.31
Consensus pattern (47 bp):
CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
Found at i:91317341 original size:147 final size:146
Alignment explanation
Indices: 91317073--91317437 Score: 578
Period size: 147 Copynumber: 2.5 Consensus size: 146
91317063 ACACGTTTCG
* * * *
91317073 CATTAGCCATTCGGCCTTACCACATATATTCATGTTCACATTCATCACATTGGCCATTCGGCCTT
1 CATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCATCACATTGGCCATTCGGCCTT
* *
91317138 AT---C-T-CATATATGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATACGC
66 ATCACCATACATATATACAGGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATACGC
*
91317198 ATGTTCACATTCATCA
131 ATGTTCACATCCATCA
* * *
91317214 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCACATTGGCCATTCAGCATT
1 CATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCATCACATTGGCCATTCGGCCTT
*
91317279 ATCACGCATATATATATACAGGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATACG
66 ATCAC-CATACATATATACAGGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATACG
91317344 CATGTTCACATCCATCA
130 CATGTTCACATCCATCA
91317361 CATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCATCACATTGGCCATTCGGCCTT
1 CATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCATCACATTGGCCATTCGGCCTT
91317426 ATCACACATACA
66 ATCAC-CATACA
91317438 CATGTTCACA
Statistics
Matches: 202, Mismatches: 16, Indels: 6
0.90 0.07 0.03
Matches are distributed among these distances:
141 60 0.30
145 1 0.00
146 1 0.00
147 140 0.69
ACGTcount: A:0.27, C:0.30, G:0.12, T:0.31
Consensus pattern (146 bp):
CATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCATCACATTGGCCATTCGGCCTT
ATCACCATACATATATACAGGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATACGC
ATGTTCACATCCATCA
Found at i:91317384 original size:22 final size:22
Alignment explanation
Indices: 91317357--91317431 Score: 57
Period size: 22 Copynumber: 3.3 Consensus size: 22
91317347 GTTCACATCC
91317357 ATCACATTGGCCATTCGGCCTT
1 ATCACATTGGCCATTCGGCCTT
* *
91317379 ATCACACATAT-G-CATGTTC-ACATT
1 AT--CACAT-TGGCCA--TTCGGCCTT
91317403 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
91317426 ATCACA
1 ATCACA
91317432 CATACACATG
Statistics
Matches: 40, Mismatches: 4, Indels: 18
0.65 0.06 0.29
Matches are distributed among these distances:
22 12 0.30
23 11 0.28
24 11 0.28
25 6 0.15
ACGTcount: A:0.25, C:0.31, G:0.13, T:0.31
Consensus pattern (22 bp):
ATCACATTGGCCATTCGGCCTT
Found at i:91317435 original size:194 final size:194
Alignment explanation
Indices: 91317096--91317457 Score: 643
Period size: 194 Copynumber: 1.9 Consensus size: 194
91317086 GCCTTACCAC
* * * * *
91317096 ATATATTCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCTCATATATGCATGTTCACAT
1 ATATATACAGGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATACGCATGTTCACAT
*
91317161 TCATCACATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCACATTGGCCATTC
66 CCATCACATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCACATTGGCCATTC
* *
91317226 GGCCTTATCACACATACGCATGTTCACATTCATCACATTGGCCATTCAGCATTATCACGCATAT
131 GGCCTTATCACACATACACATGTTCACATCCATCACATTGGCCATTCAGCATTATCACGCATAT
91317290 ATATATACAGGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATACGCATGTTCACAT
1 ATATATACAGGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATACGCATGTTCACAT
*
91317355 CCATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCATCACATTGGCCATTC
66 CCATCACATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCACATTGGCCATTC
91317420 GGCCTTATCACACATACACATGTTCACATCCATCACAT
131 GGCCTTATCACACATACACATGTTCACATCCATCACAT
91317458 AAAATCCTAA
Statistics
Matches: 159, Mismatches: 9, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
194 159 1.00
ACGTcount: A:0.27, C:0.30, G:0.12, T:0.31
Consensus pattern (194 bp):
ATATATACAGGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATACGCATGTTCACAT
CCATCACATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCACATTGGCCATTC
GGCCTTATCACACATACACATGTTCACATCCATCACATTGGCCATTCAGCATTATCACGCATAT
Found at i:91321380 original size:40 final size:40
Alignment explanation
Indices: 91321336--91321607 Score: 463
Period size: 40 Copynumber: 6.8 Consensus size: 40
91321326 CCAGCATGAT
* * * * *
91321336 TGCTCTTCGGGACCTAGCCCAGATATAACACCAGCACGAA
1 TGCTCCTCGGGACTTAGCCCGGATATATCACTAGCACGAA
*
91321376 TGCTCCTCGGGACTTAGCCCGAATATATCACTAGCACGAA
1 TGCTCCTCGGGACTTAGCCCGGATATATCACTAGCACGAA
91321416 TGCTCCTCGGGACTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCCTCGGGACTTAGCCCGGATATATCACTAGCACGAA
*
91321456 TGCTCATCGGGACTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCCTCGGGACTTAGCCCGGATATATCACTAGCACGAA
91321496 TGCTCCTCGGGACTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCCTCGGGACTTAGCCCGGATATATCACTAGCACGAA
91321536 TGCTCCTCGGGACTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCCTCGGGACTTAGCCCGGATATATCACTAGCACGAA
* *
91321576 TGCTCTTCAGGACTTAGCCCGGATATATCACT
1 TGCTCCTCGGGACTTAGCCCGGATATATCACT
91321608 CTCAATTCTC
Statistics
Matches: 221, Mismatches: 11, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
40 221 1.00
ACGTcount: A:0.26, C:0.30, G:0.21, T:0.23
Consensus pattern (40 bp):
TGCTCCTCGGGACTTAGCCCGGATATATCACTAGCACGAA
Found at i:91322918 original size:36 final size:36
Alignment explanation
Indices: 91322860--91322997 Score: 217
Period size: 36 Copynumber: 3.9 Consensus size: 36
91322850 AGCTCAGACG
* * *
91322860 AAATCTCCACATGAAGTTATCGGGTCTTACCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCGGACA
91322896 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTA-CCGGACA
*
91322933 TAATCTCCACACGTAGTCATC-GGTCTTACCGGAC-
1 AAATCTCCACACGTAGTCATCGGGTCTTACCGGACA
91322967 AAATCTCCACACGTAGTCATCGGGTCTTACC
1 AAATCTCCACACGTAGTCATCGGGTCTTACC
91322998 CGGAATATAT
Statistics
Matches: 95, Mismatches: 5, Indels: 5
0.90 0.05 0.05
Matches are distributed among these distances:
34 20 0.21
35 15 0.16
36 33 0.35
37 27 0.28
ACGTcount: A:0.27, C:0.30, G:0.18, T:0.25
Consensus pattern (36 bp):
AAATCTCCACACGTAGTCATCGGGTCTTACCGGACA
Found at i:91322982 original size:71 final size:73
Alignment explanation
Indices: 91322861--91323001 Score: 241
Period size: 71 Copynumber: 2.0 Consensus size: 73
91322851 GCTCAGACGA
* *
91322861 AATCTCCACATGAAGTTATCGGGTCTTACCGGACAAAATCTCCACACGTAGTCATCGGGTCTTAC
1 AATCTCCACACGAAGTCATCGGGTCTTACCGGACAAAATCTCCACACGTAGTCATCGGGTCTTAC
91322926 CCGGACAT
66 CCGGACAT
*
91322934 AATCTCCACACGTAGTCATC-GGTCTTACCGGAC-AAATCTCCACACGTAGTCATCGGGTCTTAC
1 AATCTCCACACGAAGTCATCGGGTCTTACCGGACAAAATCTCCACACGTAGTCATCGGGTCTTAC
91322997 CCGGA
66 CCGGA
91323002 ATATATTTCC
Statistics
Matches: 65, Mismatches: 3, Indels: 2
0.93 0.04 0.03
Matches are distributed among these distances:
71 35 0.54
72 13 0.20
73 17 0.26
ACGTcount: A:0.26, C:0.30, G:0.19, T:0.24
Consensus pattern (73 bp):
AATCTCCACACGAAGTCATCGGGTCTTACCGGACAAAATCTCCACACGTAGTCATCGGGTCTTAC
CCGGACAT
Found at i:91323268 original size:47 final size:47
Alignment explanation
Indices: 91323206--91323636 Score: 666
Period size: 47 Copynumber: 9.1 Consensus size: 47
91323196 ACACGTTTCG
* * * **
91323206 CATTAGCCATTCGGCCTTACCACATATATTCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
* * *
91323253 CATTGGCCATTCGGCCTTATCTCATATATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
91323300 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
91323347 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
***
91323394 CATTGGCCATTCGGCCTTATCACACATATATATACGGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCAT---GTTCACATTCATCA
***
91323444 CATTGGCCATTCGGCCTTATCACACATATATATACGGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCAT---GTTCACATTCATCA
91323494 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACA-TCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
91323540 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
*
91323587 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATCCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
91323634 CAT
1 CAT
91323637 AAAATCCTAA
Statistics
Matches: 366, Mismatches: 14, Indels: 8
0.94 0.04 0.02
Matches are distributed among these distances:
46 46 0.13
47 226 0.62
50 94 0.26
ACGTcount: A:0.26, C:0.31, G:0.12, T:0.31
Consensus pattern (47 bp):
CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
Found at i:91330912 original size:27 final size:26
Alignment explanation
Indices: 91330872--91330922 Score: 66
Period size: 27 Copynumber: 1.9 Consensus size: 26
91330862 ATGTTTAAAA
* *
91330872 ACTTTTTATTTATTTTTTTTATTTTC
1 ACTTTTTATTTATTTATCTTATTTTC
*
91330898 ACTTTTATCTTTATTTATCTTATTT
1 ACTTTT-TATTTATTTATCTTATTT
91330923 AAGTACTTTT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
26 6 0.29
27 15 0.71
ACGTcount: A:0.18, C:0.10, G:0.00, T:0.73
Consensus pattern (26 bp):
ACTTTTTATTTATTTATCTTATTTTC
Found at i:91349547 original size:6 final size:6
Alignment explanation
Indices: 91349536--91349562 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
91349526 TTTATTATTT
91349536 TTTTAA TTTTAA TTTTAA TTTTAA TTT
1 TTTTAA TTTTAA TTTTAA TTTTAA TTT
91349563 CCTTTTATTT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (6 bp):
TTTTAA
Found at i:91356845 original size:24 final size:24
Alignment explanation
Indices: 91356818--91356871 Score: 65
Period size: 24 Copynumber: 2.2 Consensus size: 24
91356808 AGATACATAG
91356818 TCAGAAACAGATACA-ATTCTAGAT
1 TCAGAAACAGATACAGATTC-AGAT
* *
91356842 TCAGAATCAGATTCAGATTCAGAT
1 TCAGAAACAGATACAGATTCAGAT
91356866 TACAGA
1 T-CAGA
91356872 TAAAGACATG
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
24 18 0.69
25 8 0.31
ACGTcount: A:0.43, C:0.17, G:0.15, T:0.26
Consensus pattern (24 bp):
TCAGAAACAGATACAGATTCAGAT
Found at i:91356846 original size:18 final size:19
Alignment explanation
Indices: 91356825--91356865 Score: 52
Period size: 18 Copynumber: 2.3 Consensus size: 19
91356815 TAGTCAGAAA
91356825 CAGATA-CA-ATTCTAGATT
1 CAGATATCAGATTC-AGATT
91356843 CAGA-ATCAGATTCAGATT
1 CAGATATCAGATTCAGATT
91356861 CAGAT
1 CAGAT
91356866 TACAGATAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 5
0.80 0.00 0.20
Matches are distributed among these distances:
17 1 0.05
18 15 0.75
19 4 0.20
ACGTcount: A:0.39, C:0.17, G:0.15, T:0.29
Consensus pattern (19 bp):
CAGATATCAGATTCAGATT
Found at i:91356857 original size:6 final size:6
Alignment explanation
Indices: 91356833--91356872 Score: 53
Period size: 6 Copynumber: 6.3 Consensus size: 6
91356823 AACAGATACA
*
91356833 ATTCTAG ATTCAG AATCAG ATTCAG ATTCAG ATTACAG AT
1 ATTC-AG ATTCAG ATTCAG ATTCAG ATTCAG ATT-CAG AT
91356873 AAAGACATGC
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
6 21 0.70
7 9 0.30
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.33
Consensus pattern (6 bp):
ATTCAG
Found at i:91367369 original size:19 final size:20
Alignment explanation
Indices: 91367345--91367382 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
91367335 GGTACCACCA
91367345 AAACAT-ATATCA-CATCTTT
1 AAACATCAT-TCATCATCTTT
91367364 AAACATCATTCATCATCTT
1 AAACATCATTCATCATCTT
91367383 ACCACCTTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.39, C:0.24, G:0.00, T:0.37
Consensus pattern (20 bp):
AAACATCATTCATCATCTTT
Found at i:91367718 original size:93 final size:93
Alignment explanation
Indices: 91367612--91367782 Score: 279
Period size: 93 Copynumber: 1.8 Consensus size: 93
91367602 GCCCCTAAGT
*
91367612 GAACTCGGACTCAACTCAACGAGCTCGGGCATTCGCATCCATAAATGAACTCGGACTCAAATCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAAATCAA
91367677 CAAGTTCGGATGCCTAGTTACATCTCAC
66 CAAGTTCGGATGCCTAGTTACATCTCAC
* ** * *
91367705 GAACTCGGACTCAACTCAACGAGTTCGGACATTTTCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAAATCAA
*
91367770 CGAGTTCGGATGC
66 CAAGTTCGGATGC
91367783 TCAACCATCC
Statistics
Matches: 71, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 71 1.00
ACGTcount: A:0.30, C:0.28, G:0.19, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAAATCAA
CAAGTTCGGATGCCTAGTTACATCTCAC
Found at i:91367765 original size:46 final size:46
Alignment explanation
Indices: 91367607--91367779 Score: 190
Period size: 46 Copynumber: 3.7 Consensus size: 46
91367597 AACCCGCCCC
* * **
91367607 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTACATCCA
* * * *
91367653 TAAATGAACTCGGACTCAAATCAACAAGTTCGGATGCCTAGTTACAT-C-
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-ATTTACATCCA
* * *
91367701 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTTTCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTACATCCA
91367746 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
91367780 TGCTCAACCA
Statistics
Matches: 104, Mismatches: 16, Indels: 14
0.78 0.12 0.10
Matches are distributed among these distances:
43 6 0.06
44 2 0.02
45 2 0.02
46 58 0.56
47 27 0.26
48 2 0.02
49 2 0.02
50 5 0.05
ACGTcount: A:0.31, C:0.27, G:0.19, T:0.23
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTACATCCA
Found at i:91368236 original size:30 final size:30
Alignment explanation
Indices: 91368202--91368261 Score: 84
Period size: 30 Copynumber: 2.0 Consensus size: 30
91368192 ATTTAATATG
91368202 AACTTTGGAAAAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
* * * *
91368232 AACTTTTGCATAATTACACTTTTTCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
91368262 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.30, C:0.25, G:0.07, T:0.38
Consensus pattern (30 bp):
AACTTTGGAAAAATTACACTTTTGCCCCTA
Found at i:91371760 original size:25 final size:25
Alignment explanation
Indices: 91371726--91371775 Score: 91
Period size: 25 Copynumber: 2.0 Consensus size: 25
91371716 GGGTAATTCG
*
91371726 AGGTAGGATCTGAATTTACCCTGGA
1 AGGTAGGATCTGAATTTAACCTGGA
91371751 AGGTAGGATCTGAATTTAACCTGGA
1 AGGTAGGATCTGAATTTAACCTGGA
91371776 CTGGTAATTC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.30, C:0.14, G:0.28, T:0.28
Consensus pattern (25 bp):
AGGTAGGATCTGAATTTAACCTGGA
Found at i:91376451 original size:13 final size:13
Alignment explanation
Indices: 91376433--91376460 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
91376423 AACAAATAGC
91376433 TAGGGTATTTTCT
1 TAGGGTATTTTCT
91376446 TAGGGTATTTTCT
1 TAGGGTATTTTCT
91376459 TA
1 TA
91376461 CCTTACCTTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.18, C:0.07, G:0.21, T:0.54
Consensus pattern (13 bp):
TAGGGTATTTTCT
Found at i:91378724 original size:40 final size:40
Alignment explanation
Indices: 91378661--91378753 Score: 102
Period size: 40 Copynumber: 2.3 Consensus size: 40
91378651 TATCTCGGTA
91378661 TCGCACACTTAGTGCCTTATATAGCCAAAGATA-TTCCAAT
1 TCGCACACTTAGTG-CTTATATAGCCAAAGATATTTCCAAT
* * **
91378701 TCGCACACTTAGTG-TTATCTATAGCCGAAGCTATTTTTAAT
1 TCGCACACTTAGTGCTTA--TATAGCCAAAGATATTTCCAAT
91378742 T-GCACACTTAGT
1 TCGCACACTTAGT
91378754 ACTGAACAAA
Statistics
Matches: 46, Mismatches: 4, Indels: 6
0.82 0.07 0.11
Matches are distributed among these distances:
38 3 0.07
40 37 0.80
41 6 0.13
ACGTcount: A:0.29, C:0.23, G:0.14, T:0.34
Consensus pattern (40 bp):
TCGCACACTTAGTGCTTATATAGCCAAAGATATTTCCAAT
Found at i:91380377 original size:54 final size:54
Alignment explanation
Indices: 91380275--91380430 Score: 213
Period size: 54 Copynumber: 2.9 Consensus size: 54
91380265 ATTACCAAAG
* *
91380275 TACCCTCTATTTATAGAATTACCGTTTTACCCTCAATTTACAGAATTATCATTT
1 TACCCTCGATTTATAGAATTACCGTTTTACCCTCGATTTACAGAATTATCATTT
* *
91380329 TACCCTCGATTTATAGAATTACCGTTTTACCCTCGATTTATAGAATTATTATTT
1 TACCCTCGATTTATAGAATTACCGTTTTACCCTCGATTTACAGAATTATCATTT
* * * * * * *
91380383 TACCATTGAATTACAAAATTACTGTTTTACCCTCGATTTACAAAATTA
1 TACCCTCGATTTATAGAATTACCGTTTTACCCTCGATTTACAGAATTA
91380431 CTAAAATACC
Statistics
Matches: 90, Mismatches: 12, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
54 90 1.00
ACGTcount: A:0.31, C:0.20, G:0.07, T:0.42
Consensus pattern (54 bp):
TACCCTCGATTTATAGAATTACCGTTTTACCCTCGATTTACAGAATTATCATTT
Found at i:91380384 original size:81 final size:81
Alignment explanation
Indices: 91380275--91380431 Score: 192
Period size: 81 Copynumber: 1.9 Consensus size: 81
91380265 ATTACCAAAG
* * *
91380275 TACCCTCTATTTATAGAATTACCGTTTTACC-CTCAATTTACAGAATTA-TCATTTTACCCTCGA
1 TACCCTCGATTTATAGAATTACCATTTTACCACTCAA-TTACAAAATTACT-ATTTTACCCTCGA
* *
91380338 TTTATAGAATTACCGTTT
64 TTTACAAAATTACCGTTT
** * * *
91380356 TACCCTCGATTTATAGAATTATTATTTTACCATTGAATTACAAAATTACTGTTTTACCCTCGATT
1 TACCCTCGATTTATAGAATTACCATTTTACCACTCAATTACAAAATTACTATTTTACCCTCGATT
91380421 TACAAAATTAC
66 TACAAAATTAC
91380432 TAAAATACCC
Statistics
Matches: 64, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
81 60 0.94
82 4 0.06
ACGTcount: A:0.31, C:0.20, G:0.07, T:0.41
Consensus pattern (81 bp):
TACCCTCGATTTATAGAATTACCATTTTACCACTCAATTACAAAATTACTATTTTACCCTCGATT
TACAAAATTACCGTTT
Found at i:91380432 original size:27 final size:27
Alignment explanation
Indices: 91380275--91380432 Score: 165
Period size: 27 Copynumber: 5.9 Consensus size: 27
91380265 ATTACCAAAG
* * *
91380275 TACCCTCTATTTATAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACTGTTT
* *
91380302 TACCCTCAATTTACAGAATTA-TCATTT
1 TACCCTCGATTTACAGAATTACT-GTTT
* *
91380329 TACCCTCGATTTATAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACTGTTT
* * *
91380356 TACCCTCGATTTATAGAATTATTATTT
1 TACCCTCGATTTACAGAATTACTGTTT
* * * *
91380383 TACCATTGAATTACAAAATTACTGTTT
1 TACCCTCGATTTACAGAATTACTGTTT
*
91380410 TACCCTCGATTTACAAAATTACT
1 TACCCTCGATTTACAGAATTACT
91380433 AAAATACCCT
Statistics
Matches: 108, Mismatches: 21, Indels: 4
0.81 0.16 0.03
Matches are distributed among these distances:
27 108 1.00
ACGTcount: A:0.31, C:0.20, G:0.07, T:0.42
Consensus pattern (27 bp):
TACCCTCGATTTACAGAATTACTGTTT
Found at i:91380441 original size:81 final size:81
Alignment explanation
Indices: 91380262--91380442 Score: 186
Period size: 81 Copynumber: 2.2 Consensus size: 81
91380252 CTCAAATTGT
* * * *
91380262 AAAATTACCAAAGTACCCTCTATTTATAGAATTACCGTTTTACCCTCAATTTACAGAATTATCAT
1 AAAATTACCAAAATACCCTCGATTTATAGAATTACCATTTTACCCTCAATTTACAAAATTATCAT
*
91380327 TTTACCCTCGATTTAT
66 TTTACCCTCGATTTAC
* **** ** * *
91380343 AGAATTACCGTTTTACCCTCGATTTATAGAATTATTATTTTACCATTGAA-TTACAAAATTA-CT
1 AAAATTACCAAAATACCCTCGATTTATAGAATTACCATTTTACC-CTCAATTTACAAAATTATC-
*
91380406 GTTTTACCCTCGATTTAC
64 ATTTTACCCTCGATTTAC
*
91380424 AAAATTACTAAAATACCCT
1 AAAATTACCAAAATACCCT
91380443 TAGTTTACAA
Statistics
Matches: 78, Mismatches: 20, Indels: 4
0.76 0.20 0.04
Matches are distributed among these distances:
80 1 0.01
81 74 0.95
82 3 0.04
ACGTcount: A:0.34, C:0.20, G:0.07, T:0.39
Consensus pattern (81 bp):
AAAATTACCAAAATACCCTCGATTTATAGAATTACCATTTTACCCTCAATTTACAAAATTATCAT
TTTACCCTCGATTTAC
Found at i:91380451 original size:54 final size:54
Alignment explanation
Indices: 91380261--91380567 Score: 192
Period size: 54 Copynumber: 5.7 Consensus size: 54
91380251 CCTCAAATTG
* * * *
91380261 TAAAATTACCAAAGTACCCTCTA-TTTATAGAATTACCGTTTTACCCTCAATTTA
1 TAAAATTACTAAAATACCCT-TAGTTTATAAAATTACCGTTTTACCCTCGATTTA
* * *** * *
91380315 CAGAATTA-TCATTTTACCC-TCGATTTATAGAATTACCGTTTTACCCTCGATTTA
1 TAAAATTACT-AAAATACCCTTAG-TTTATAAAATTACCGTTTTACCCTCGATTTA
* * *** * * * *
91380369 TAGAATTATTATTTTACCATT-GAATTACAAAATTACTGTTTTACCCTCGATTTA
1 TAAAATTACTAAAATACCCTTAG-TTTATAAAATTACCGTTTTACCCTCGATTTA
* * ***
91380423 CAAAATTACTAAAATACCCTTAGTTTACAAAATTACCGAAATACCCTCGA-TTA
1 TAAAATTACTAAAATACCCTTAGTTTATAAAATTACCGTTTTACCCTCGATTTA
* * * * *** ** *
91380476 GTAAAATTGCTAAAATACCCCTGGTTTGTAAAATTACCGAAATACCCTTAATTTG
1 -TAAAATTACTAAAATACCCTTAGTTTATAAAATTACCGTTTTACCCTCGATTTA
* * *
91380531 TAAAATTACTAAAATACCCCTAATTTGTAAAATTACC
1 TAAAATTACTAAAATACCCTTAGTTTATAAAATTACC
91380568 AATATACCAC
Statistics
Matches: 207, Mismatches: 38, Indels: 16
0.79 0.15 0.06
Matches are distributed among these distances:
52 1 0.00
53 3 0.01
54 198 0.96
55 5 0.02
ACGTcount: A:0.36, C:0.20, G:0.07, T:0.36
Consensus pattern (54 bp):
TAAAATTACTAAAATACCCTTAGTTTATAAAATTACCGTTTTACCCTCGATTTA
Found at i:91380561 original size:81 final size:81
Alignment explanation
Indices: 91380424--91380637 Score: 277
Period size: 81 Copynumber: 2.6 Consensus size: 81
91380414 CTCGATTTAC
** * ** * * * *
91380424 AAAATTACTAAAATACCCTTAGTTTACAAAATTACCGAAATA-CCCTCGATTAGTAAAATTGCTA
1 AAAATTACCGAAATACCCTTAATTTGTAAAATTACCAAAATACCCCT-GATTTGTAAAATTACCA
*
91380488 AAATACCCCTGGTTTGT
65 AAATACCACTGGTTTGT
* *
91380505 AAAATTACCGAAATACCCTTAATTTGTAAAATTACTAAAATACCCCTAATTTGTAAAATTACCAA
1 AAAATTACCGAAATACCCTTAATTTGTAAAATTACCAAAATACCCCTGATTTGTAAAATTACCAA
*
91380570 TATACCACTGGTTTGT
66 AATACCACTGGTTTGT
* *
91380586 GAAATTACCGAAATACCCTCAATTTGTAAAATTACCAAAATACCCCTGATTT
1 AAAATTACCGAAATACCCTTAATTTGTAAAATTACCAAAATACCCCTGATTT
91380638 ACAAAGTTAC
Statistics
Matches: 115, Mismatches: 17, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
81 111 0.97
82 4 0.03
ACGTcount: A:0.40, C:0.20, G:0.08, T:0.31
Consensus pattern (81 bp):
AAAATTACCGAAATACCCTTAATTTGTAAAATTACCAAAATACCCCTGATTTGTAAAATTACCAA
AATACCACTGGTTTGT
Found at i:91380575 original size:54 final size:54
Alignment explanation
Indices: 91380410--91380713 Score: 238
Period size: 54 Copynumber: 5.6 Consensus size: 54
91380400 ATTACTGTTT
* ** * * **
91380410 TACCCTCGATTTACAAAATTACTAAAATACCCTTAGTTTACAAAATTACCGAAA
1 TACCCTTGATTTGTAAAATTACTAAAATACCCCTAATTTGTAAAATTACCGAAA
* * * **
91380464 TACCCTCGATTAGTAAAATTGCTAAAATACCCCTGGTTTGTAAAATTACCGAAA
1 TACCCTTGATTTGTAAAATTACTAAAATACCCCTAATTTGTAAAATTACCGAAA
*
91380518 TACCCTTAATTTGTAAAATTACTAAAATACCCCTAATTTGTAAAATTACC-AATA
1 TACCCTTGATTTGTAAAATTACTAAAATACCCCTAATTTGTAAAATTACCGAA-A
* * ** *
91380572 TACCAC-TGGTTTGTGAAATTACCGAAATA-CCCTCAATTTGTAAAATTACCAAAA
1 TACC-CTTGATTTGTAAAATTACTAAAATACCCCT-AATTTGTAAAATTACCGAAA
* ** * * * * **
91380626 TACCCCTGATTTACAAAGTTAC-AGAAATACCCTTGACTTTCTAAAAATTATGGAAA
1 TACCCTTGATTTGTAAAATTACTA-AAATACCCCT-AATTTGT-AAAATTACCGAAA
* * ** *
91380682 TACCATTGGTTTACAAAATTACTGAAATACCC
1 TACCCTTGATTTGTAAAATTACTAAAATACCC
91380714 TTGGTTTGTA
Statistics
Matches: 204, Mismatches: 37, Indels: 16
0.79 0.14 0.06
Matches are distributed among these distances:
53 7 0.03
54 150 0.74
55 11 0.05
56 36 0.18
ACGTcount: A:0.40, C:0.20, G:0.09, T:0.31
Consensus pattern (54 bp):
TACCCTTGATTTGTAAAATTACTAAAATACCCCTAATTTGTAAAATTACCGAAA
Found at i:91380656 original size:81 final size:81
Alignment explanation
Indices: 91380478--91380656 Score: 243
Period size: 81 Copynumber: 2.2 Consensus size: 81
91380468 CTCGATTAGT
* * * * *
91380478 AAAATTGCTAAAATACCCCTGGTTTGTAAAATTACCGAAATACCCTTAATTTGTAAAATTACTAA
1 AAAATTACCAAAATACCACTGGTTTGTAAAATTACCGAAATACCCTCAATTTGTAAAATTACCAA
**
91380543 AATACCCCTAATTTGT
66 AATACCCCTAATTTAC
* *
91380559 AAAATTACCAATATACCACTGGTTTGTGAAATTACCGAAATACCCTCAATTTGTAAAATTACCAA
1 AAAATTACCAAAATACCACTGGTTTGTAAAATTACCGAAATACCCTCAATTTGTAAAATTACCAA
*
91380624 AATACCCCTGATTTAC
66 AATACCCCTAATTTAC
*
91380640 AAAGTTA-CAGAAATACC
1 AAAATTACCA-AAATACC
91380657 CTTGACTTTC
Statistics
Matches: 85, Mismatches: 12, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
80 2 0.02
81 83 0.98
ACGTcount: A:0.41, C:0.20, G:0.09, T:0.30
Consensus pattern (81 bp):
AAAATTACCAAAATACCACTGGTTTGTAAAATTACCGAAATACCCTCAATTTGTAAAATTACCAA
AATACCCCTAATTTAC
Found at i:91380708 original size:27 final size:27
Alignment explanation
Indices: 91380383--91380716 Score: 176
Period size: 27 Copynumber: 12.3 Consensus size: 27
91380373 ATTATTATTT
* * ***
91380383 TACCATTGAATTACAAAATTACTGTTT
1 TACCCTTGATTTACAAAATTACTGAAA
* *
91380410 TACCCTCGATTTACAAAATTACTAAAA
1 TACCCTTGATTTACAAAATTACTGAAA
*
91380437 TACCCTT-AGTTTACAAAATTACCGAAA
1 TACCCTTGA-TTTACAAAATTACTGAAA
* * * *
91380464 TACCCTCGA-TTAGTAAAATTGCTAAAA
1 TACCCTTGATTTA-CAAAATTACTGAAA
* * ** *
91380491 TACCCCTGGTTTGTAAAATTACCGAAA
1 TACCCTTGATTTACAAAATTACTGAAA
* ** *
91380518 TACCCTTAATTTGTAAAATTACTAAAA
1 TACCCTTGATTTACAAAATTACTGAAA
* * ** *
91380545 TACCCCTAATTTGTAAAATTAC-CAATA
1 TACCCTTGATTTACAAAATTACTGAA-A
* *** *
91380572 TACCAC-TGGTTTGTGAAATTACCGAAA
1 TACC-CTTGATTTACAAAATTACTGAAA
** ** **
91380599 TACCCTCAATTTGTAAAATTACCAAAA
1 TACCCTTGATTTACAAAATTACTGAAA
* * *
91380626 TACCCCTGATTTACAAAGTTACAGAAA
1 TACCCTTGATTTACAAAATTACTGAAA
91380653 TACCCTTGACTTT-CTAAAAATTA-TGGAAA
1 TACCCTTGA-TTTAC--AAAATTACT-GAAA
* *
91380682 TACCATTGGTTTACAAAATTACTGAAA
1 TACCCTTGATTTACAAAATTACTGAAA
91380709 TACCCTTG
1 TACCCTTG
91380717 GTTTGTAGAT
Statistics
Matches: 241, Mismatches: 52, Indels: 28
0.75 0.16 0.09
Matches are distributed among these distances:
26 7 0.03
27 203 0.84
28 13 0.05
29 18 0.07
ACGTcount: A:0.39, C:0.20, G:0.09, T:0.32
Consensus pattern (27 bp):
TACCCTTGATTTACAAAATTACTGAAA
Found at i:91380838 original size:27 final size:27
Alignment explanation
Indices: 91380774--91380838 Score: 78
Period size: 27 Copynumber: 2.4 Consensus size: 27
91380764 TCCCCTATTA
* *
91380774 GGTAAAAAGACCGTAAAGCCCCTGTCG
1 GGTAAAATGACCGTAAAGCCCCTGTAG
* *
91380801 GGTAAAGTGACCGTAATA-CCCCTGTAT
1 GGTAAAATGACCGTAA-AGCCCCTGTAG
91380828 GGTAAAATGAC
1 GGTAAAATGAC
91380839 AAATATGCCC
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
27 31 0.97
28 1 0.03
ACGTcount: A:0.34, C:0.22, G:0.25, T:0.20
Consensus pattern (27 bp):
GGTAAAATGACCGTAAAGCCCCTGTAG
Found at i:91381671 original size:26 final size:26
Alignment explanation
Indices: 91381642--91381816 Score: 246
Period size: 26 Copynumber: 6.8 Consensus size: 26
91381632 GAGGAAGTGC
**
91381642 AAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTACCG
*
91381668 AAAAGGGCTTATGCCCCATTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTACCG
**
91381694 AAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTACCG
*
91381720 AAAAAGGCTTATGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTACCG
* * **
91381746 AAAAGGGCTTATGCTCCAGGTTATTG
1 AAAAGGGCTTATGCCCCAGTTTACCG
91381772 AAAAGGGCTT-TGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTACCG
91381797 AAAAGGGCTT-TGCCCCAGTT
1 AAAAGGGCTTATGCCCCAGTT
91381817 ATTAAAGAGG
Statistics
Matches: 131, Mismatches: 18, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
25 31 0.24
26 100 0.76
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Consensus pattern (26 bp):
AAAAGGGCTTATGCCCCAGTTTACCG
Found at i:91381720 original size:52 final size:52
Alignment explanation
Indices: 91381642--91381816 Score: 300
Period size: 52 Copynumber: 3.4 Consensus size: 52
91381632 GAGGAAGTGC
*
91381642 AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTTATGCCCCATTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTTATGCCCCAGTTTACCG
*
91381694 AAAAGGGCTTATGCCCCAGTTTATTGAAAAAGGCTTATGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTTATGCCCCAGTTTACCG
* *
91381746 AAAAGGGCTTATGCTCCAGGTTATTGAAAAGGGCTT-TGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTTATGCCCCAGTTTACCG
91381797 AAAAGGGCTT-TGCCCCAGTT
1 AAAAGGGCTTATGCCCCAGTT
91381817 ATTAAAGAGG
Statistics
Matches: 116, Mismatches: 7, Indels: 2
0.93 0.06 0.02
Matches are distributed among these distances:
50 8 0.07
51 25 0.22
52 83 0.72
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Consensus pattern (52 bp):
AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTTATGCCCCAGTTTACCG
Found at i:91382008 original size:42 final size:42
Alignment explanation
Indices: 91381961--91382048 Score: 140
Period size: 42 Copynumber: 2.1 Consensus size: 42
91381951 TAGTCTCCCC
* ** *
91381961 AAATGGGCTTGCATACATTCATTGGTATTTCATGTGATATTG
1 AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
91382003 AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
1 AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
91382045 AAAT
1 AAAT
91382049 AGGCCTAAGG
Statistics
Matches: 42, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
42 42 1.00
ACGTcount: A:0.31, C:0.14, G:0.19, T:0.36
Consensus pattern (42 bp):
AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
Found at i:91384949 original size:29 final size:28
Alignment explanation
Indices: 91384894--91384986 Score: 116
Period size: 29 Copynumber: 3.3 Consensus size: 28
91384884 ATTGCATGAC
* * *
91384894 TATGAATGTGATTGGGCCCAATAGGCCA
1 TATGAATGTGATTGGGCCTAGTGGGCCA
91384922 TATGAATGTGATTTGGGCCTAGTGGGCCA
1 TATGAATGTGA-TTGGGCCTAGTGGGCCA
* *
91384951 TATGAAAGAGATT-GGCCTAGTGGGCCA
1 TATGAATGTGATTGGGCCTAGTGGGCCA
*
91384978 TATGCATGT
1 TATGAATGT
91384987 ATGTAGACTT
Statistics
Matches: 56, Mismatches: 8, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
27 20 0.36
28 13 0.23
29 23 0.41
ACGTcount: A:0.26, C:0.15, G:0.31, T:0.28
Consensus pattern (28 bp):
TATGAATGTGATTGGGCCTAGTGGGCCA
Found at i:91384975 original size:27 final size:29
Alignment explanation
Indices: 91384917--91384981 Score: 98
Period size: 27 Copynumber: 2.3 Consensus size: 29
91384907 GGGCCCAATA
* *
91384917 GGCCATATGAATGTGATTTGGGCCTAGTG
1 GGCCATATGAAAGAGATTTGGGCCTAGTG
91384946 GGCCATATGAAAGAGA-TT-GGCCTAGTG
1 GGCCATATGAAAGAGATTTGGGCCTAGTG
91384973 GGCCATATG
1 GGCCATATG
91384982 CATGTATGTA
Statistics
Matches: 34, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
27 18 0.53
28 2 0.06
29 14 0.41
ACGTcount: A:0.25, C:0.15, G:0.34, T:0.26
Consensus pattern (29 bp):
GGCCATATGAAAGAGATTTGGGCCTAGTG
Found at i:91386204 original size:17 final size:18
Alignment explanation
Indices: 91386173--91386206 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
91386163 TTTAAAGAAG
91386173 GGTTTTTAATGAAAACAA
1 GGTTTTTAATGAAAACAA
*
91386191 GGTTTTTGAT-AAAACA
1 GGTTTTTAATGAAAACA
91386207 CTTCAATGTG
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.41, C:0.06, G:0.18, T:0.35
Consensus pattern (18 bp):
GGTTTTTAATGAAAACAA
Found at i:91391677 original size:28 final size:29
Alignment explanation
Indices: 91391619--91391684 Score: 80
Period size: 28 Copynumber: 2.3 Consensus size: 29
91391609 TTTTCATTTA
* * *
91391619 TTTCACAATTTAACCCCTTAATTTACATT
1 TTTCTCAAATTAACCCCTTAATTGACATT
*
91391648 TTTCTCAAATTAATCCC-TAATTGACATT
1 TTTCTCAAATTAACCCCTTAATTGACATT
*
91391676 TTTGTCAAA
1 TTTCTCAAA
91391685 AATCACTTTA
Statistics
Matches: 32, Mismatches: 5, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
28 18 0.56
29 14 0.44
ACGTcount: A:0.32, C:0.21, G:0.03, T:0.44
Consensus pattern (29 bp):
TTTCTCAAATTAACCCCTTAATTGACATT
Found at i:91393267 original size:46 final size:46
Alignment explanation
Indices: 91393214--91393388 Score: 212
Period size: 46 Copynumber: 3.8 Consensus size: 46
91393204 ATTTGGGCAT
*
91393214 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGC
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGC
* * * *
91393260 CCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGC
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--ACGC
* *
91393305 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCGAACGC
1 --CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGC
* *
91393353 CCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
91393389 GCGAGTTACA
Statistics
Matches: 110, Mismatches: 12, Indels: 14
0.81 0.09 0.10
Matches are distributed among these distances:
43 6 0.05
45 5 0.05
46 61 0.55
47 28 0.25
48 5 0.05
50 5 0.05
ACGTcount: A:0.21, C:0.22, G:0.29, T:0.27
Consensus pattern (46 bp):
CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGC
Found at i:91393368 original size:93 final size:93
Alignment explanation
Indices: 91393209--91393381 Score: 310
Period size: 93 Copynumber: 1.9 Consensus size: 93
91393199 AGGATATTTG
* *
91393209 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGCCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCAAACGCCCGAACTCGTTGAG
91393274 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
* *
91393302 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCAAACGCCCGAACTCGTTGAG
91393367 TTGAGTCCGAGTTCG
66 TTGAGTCCGAGTTCG
91393382 CTTATGGGCG
Statistics
Matches: 76, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.21, C:0.23, G:0.29, T:0.27
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCAAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:91396205 original size:48 final size:48
Alignment explanation
Indices: 91396150--91396524 Score: 322
Period size: 48 Copynumber: 7.8 Consensus size: 48
91396140 GTGAATTGTG
* * *
91396150 GATGCCATGTTCCAAACATGGTCTTACACTGGCTCACATGTCGAGGCC
1 GATGCCATGTTCCAAACATGGTCTTACACTAGCTCACATATCAAGGCC
* * * * * * *
91396198 GATGCCATCTCCCAGACATGGTCTTACACTAGCTCTCGTCTCAATGCC
1 GATGCCATGTTCCAAACATGGTCTTACACTAGCTCACATATCAAGGCC
* ** * * * *
91396246 AATGCCATGCCCCAGACATGGTCTTACACTGGCTCTCATATCATGGCC
1 GATGCCATGTTCCAAACATGGTCTTACACTAGCTCACATATCAAGGCC
* * * * *
91396294 GACGCCATGTTCCAGAA-ATGGTATTACACTAGCTCACATTTCAATGCT
1 GATGCCATGTTCCA-AACATGGTCTTACACTAGCTCACATATCAAGGCC
* * ** *
91396342 GATGCCATGTTCCAAACATGGTCTTACTCTAGCTCTCATATCGTGGCT
1 GATGCCATGTTCCAAACATGGTCTTACACTAGCTCACATATCAAGGCC
* * * * * * *
91396390 TATGCCATGTCCCAGACGTGGTCTTAGACTAGCTCACATTTCAATGCC
1 GATGCCATGTTCCAAACATGGTCTTACACTAGCTCACATATCAAGGCC
* * * * ** **
91396438 AATGCCATGTTCCAAACATGGTCTTACATTGGCTCTCATATCGTGGTT
1 GATGCCATGTTCCAAACATGGTCTTACACTAGCTCACATATCAAGGCC
* *
91396486 GATGGCATG-TCTCAGACATGGTCTTACACTAGCTCACAT
1 GATGCCATGTTC-CAAACATGGTCTTACACTAGCTCACAT
91396525 TTCATCCAAA
Statistics
Matches: 255, Mismatches: 69, Indels: 6
0.77 0.21 0.02
Matches are distributed among these distances:
47 4 0.02
48 250 0.98
49 1 0.00
ACGTcount: A:0.23, C:0.29, G:0.19, T:0.29
Consensus pattern (48 bp):
GATGCCATGTTCCAAACATGGTCTTACACTAGCTCACATATCAAGGCC
Found at i:91396315 original size:96 final size:96
Alignment explanation
Indices: 91396151--91396528 Score: 488
Period size: 96 Copynumber: 3.9 Consensus size: 96
91396141 TGAATTGTGG
* * *
91396151 ATGCCATGTTCCAAACATGGTCTTACACTGGCTCACATGTCGA-GGCCGATGCCATCTCCCAGAC
1 ATGCCATGTTCCAAACATGGTCTTACACTGGCTCTCATATC-ATGGCCGATGCCATGTCCCAGAC
* * *
91396215 ATGGTCTTACACTAGCTCTCGTCTCAATGCCA
65 ATGGTCTTACACTAGCTCACATTTCAATGCCA
** * * * *
91396247 ATGCCATGCCCCAGACATGGTCTTACACTGGCTCTCATATCATGGCCGACGCCATGTTCCAGAAA
1 ATGCCATGTTCCAAACATGGTCTTACACTGGCTCTCATATCATGGCCGATGCCATGTCCCAGACA
* **
91396312 TGGTATTACACTAGCTCACATTTCAATGCTG
66 TGGTCTTACACTAGCTCACATTTCAATGCCA
* * * ** *
91396343 ATGCCATGTTCCAAACATGGTCTTACTCTAGCTCTCATATCGTGGCTTATGCCATGTCCCAGACG
1 ATGCCATGTTCCAAACATGGTCTTACACTGGCTCTCATATCATGGCCGATGCCATGTCCCAGACA
*
91396408 TGGTCTTAGACTAGCTCACATTTCAATGCCA
66 TGGTCTTACACTAGCTCACATTTCAATGCCA
* * ** * *
91396439 ATGCCATGTTCCAAACATGGTCTTACATTGGCTCTCATATCGTGGTTGATGGCATGTCTCAGACA
1 ATGCCATGTTCCAAACATGGTCTTACACTGGCTCTCATATCATGGCCGATGCCATGTCCCAGACA
91396504 TGGTCTTACACTAGCTCACATTTCA
66 TGGTCTTACACTAGCTCACATTTCA
91396529 TCCAAATGTC
Statistics
Matches: 241, Mismatches: 40, Indels: 2
0.85 0.14 0.01
Matches are distributed among these distances:
95 1 0.00
96 240 1.00
ACGTcount: A:0.24, C:0.29, G:0.19, T:0.29
Consensus pattern (96 bp):
ATGCCATGTTCCAAACATGGTCTTACACTGGCTCTCATATCATGGCCGATGCCATGTCCCAGACA
TGGTCTTACACTAGCTCACATTTCAATGCCA
Found at i:91396413 original size:144 final size:144
Alignment explanation
Indices: 91396153--91396520 Score: 373
Period size: 144 Copynumber: 2.6 Consensus size: 144
91396143 AATTGTGGAT
* * *
91396153 GCCATGTTCCAAACATGGTCTTACACTGGCTCACATGTCGAGGCCGATGCCATCTCCCAGACATG
1 GCCATGTTCCAAACATGGTCTTACACTAGCTCACATGTCAAGGCCGATGCCATCTCCCAAACATG
* * * *
91396218 GTCTTACACTAGCTCTCGTCTCAATGCCAATGCCATGCCCCAGACATGGTCTTACACTGGCTCTC
66 GTCTTACACTAGCTCTCATATCAATGCCAATGCCATGCCCCAGACATGGTCTTACACTAGCTCAC
*
91396283 ATATC-ATGGCCGAC
131 ATATCAAT-GCCAAC
* * * * * *
91396297 GCCATGTTCCAGAA-ATGGTATTACACTAGCTCACATTTCAATGCTGATGCCATGTTCCAAACAT
1 GCCATGTTCCA-AACATGGTCTTACACTAGCTCACATGTCAAGGCCGATGCCATCTCCCAAACAT
* * ** * * *
91396361 GGTCTTACTCTAGCTCTCATATC-GTGGCTTATGCCATGTCCCAGACGTGGTCTTAGACTAGCTC
65 GGTCTTACACTAGCTCTCATATCAAT-GCCAATGCCATGCCCCAGACATGGTCTTACACTAGCTC
* *
91396425 ACATTTCAATGCCAAT
129 ACATATCAATGCCAAC
* * * * ** ** * * * *
91396441 GCCATGTTCCAAACATGGTCTTACATTGGCTCTCATATCGTGGTTGATGGCATGTCTCAGACATG
1 GCCATGTTCCAAACATGGTCTTACACTAGCTCACATGTCAAGGCCGATGCCATCTCCCAAACATG
91396506 GTCTTACACTAGCTC
66 GTCTTACACTAGCTC
91396521 ACATTTCATC
Statistics
Matches: 183, Mismatches: 37, Indels: 8
0.80 0.16 0.04
Matches are distributed among these distances:
143 3 0.02
144 176 0.96
145 4 0.02
ACGTcount: A:0.23, C:0.29, G:0.19, T:0.29
Consensus pattern (144 bp):
GCCATGTTCCAAACATGGTCTTACACTAGCTCACATGTCAAGGCCGATGCCATCTCCCAAACATG
GTCTTACACTAGCTCTCATATCAATGCCAATGCCATGCCCCAGACATGGTCTTACACTAGCTCAC
ATATCAATGCCAAC
Found at i:91399969 original size:39 final size:39
Alignment explanation
Indices: 91399888--91399980 Score: 116
Period size: 39 Copynumber: 2.4 Consensus size: 39
91399878 TGCATGGTAT
* *
91399888 TGGAAAAATATCCGGACTTGAAGTCCGCAGGCTTTACAC
1 TGGAAAAATATCCGGACTTAAAGTCCGCAGGCTTAACAC
* * **
91399927 TGGAAATATATCCGGACTTAAAGTCTGCAGGC-TAAGTGC
1 TGGAAAAATATCCGGACTTAAAGTCCGCAGGCTTAA-CAC
91399966 TGGAAAAATATCCGG
1 TGGAAAAATATCCGG
91399981 GCTGAGTCCC
Statistics
Matches: 46, Mismatches: 7, Indels: 2
0.84 0.13 0.04
Matches are distributed among these distances:
38 2 0.04
39 44 0.96
ACGTcount: A:0.32, C:0.19, G:0.25, T:0.24
Consensus pattern (39 bp):
TGGAAAAATATCCGGACTTAAAGTCCGCAGGCTTAACAC
Found at i:91400005 original size:39 final size:39
Alignment explanation
Indices: 91399973--91400188 Score: 315
Period size: 39 Copynumber: 5.5 Consensus size: 39
91399963 TGCTGGAAAA
*
91399973 ATATCCGGGCTGAGTCCCGAAGGCATTCGTGCTGGTATT
1 ATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTATT
* *
91400012 ATATCCGGGCTAAGTCCTGAAGGTATTCGTGCTGGTATT
1 ATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTATT
* **
91400051 ATATCCAGGCTAAGTCCCGAAGGCATTCGTGCTGGTGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTATT
* **
91400090 ATATCTGGGCTAAGTCCCGAAGGCATTCGTGCTGGCGTT
1 ATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTATT
* *
91400129 ATATCCGAGCTAAGTCCCGAAGGCATTCGTGCTAGTATT
1 ATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTATT
91400168 ATATCCGGGCTTAAAGTCCCG
1 ATATCCGGGC-T-AAGTCCCG
91400189 CATGCTTTGT
Statistics
Matches: 157, Mismatches: 18, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
39 148 0.94
40 1 0.01
41 8 0.05
ACGTcount: A:0.21, C:0.23, G:0.28, T:0.28
Consensus pattern (39 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTATT
Found at i:91400018 original size:78 final size:77
Alignment explanation
Indices: 91399933--91400178 Score: 280
Period size: 78 Copynumber: 3.2 Consensus size: 77
91399923 ACACTGGAAA
* * * ** *
91399933 TATATCCGGACTTAAAGT-CTGCAGGCTAAGTGCTGGAAAAATATCCGGGCTGAGTCCCGAAGGC
1 TATATCCGGGC-T-AAGTCCTGAAGGCTACGTGCTGGAATTATATCCGGGCTAAGTCCCGAAGGC
91399997 ATTCGTGCTGGTAT
64 ATTCGTGCTGGTAT
* *
91400011 TATATCCGGGCTAAGTCCTGAAGG-TATTCGTGCTGGTATTATATCCAGGCTAAGTCCCGAAGGC
1 TATATCCGGGCTAAGTCCTGAAGGCTA--CGTGCTGGAATTATATCCGGGCTAAGTCCCGAAGGC
**
91400075 ATTCGTGCTGGTGC
64 ATTCGTGCTGGTAT
* * * ** *
91400089 TATATCTGGGCTAAGTCCCGAAGGCATTCGTGCTGGCGTTATATCCGAGCTAAGTCCCGAAGGCA
1 TATATCCGGGCTAAGTCCTGAAGGC-TACGTGCTGGAATTATATCCGGGCTAAGTCCCGAAGGCA
*
91400154 TTCGTGCTAGTAT
65 TTCGTGCTGGTAT
91400167 TATATCCGGGCT
1 TATATCCGGGCT
91400179 TAAAGTCCCG
Statistics
Matches: 142, Mismatches: 21, Indels: 10
0.82 0.12 0.06
Matches are distributed among these distances:
76 6 0.04
77 7 0.05
78 128 0.90
80 1 0.01
ACGTcount: A:0.22, C:0.22, G:0.28, T:0.28
Consensus pattern (77 bp):
TATATCCGGGCTAAGTCCTGAAGGCTACGTGCTGGAATTATATCCGGGCTAAGTCCCGAAGGCAT
TCGTGCTGGTAT
Found at i:91405512 original size:48 final size:48
Alignment explanation
Indices: 91405448--91405854 Score: 661
Period size: 48 Copynumber: 8.5 Consensus size: 48
91405438 AATATATATG
* * *
91405448 TATGTGGTAAGGCCGAACGGCTAATGTGAAACATGTATGAGATATGTA
1 TATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTA
* *
91405496 TATGTGGTAGAGCCGAATGGCTAATGTGAAATATGTATGAGATGTGTA
1 TATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTA
*
91405544 TATGTGGTAAAGCCGAATGGCTAATGTGAAACATGTATGAGATATGTA
1 TATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTA
* *
91405592 TACGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTA
1 TATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTA
* * *
91405640 TACGTGGTAAAGCTGAATGGCTAGTGTGAAATATGTATGAGATATGTA
1 TATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTA
* *
91405688 TATGTGGTAAAGCCGAATCGCTAGTGTGAAATATGTATGAGATATGTA
1 TATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTA
* *
91405736 TACGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTA
1 TATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTA
*
91405784 TATGTGGTAAAGCCGAATGGCTAATGCGAAATATGTATGAGATATGTA
1 TATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTA
*
91405832 TATGTGGTAAAGTCGAATGGCTA
1 TATGTGGTAAAGCCGAATGGCTA
91405855 GTGATTCGGC
Statistics
Matches: 338, Mismatches: 21, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
48 338 1.00
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.30
Consensus pattern (48 bp):
TATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTA
Found at i:91406077 original size:37 final size:37
Alignment explanation
Indices: 91406027--91406129 Score: 179
Period size: 37 Copynumber: 2.8 Consensus size: 37
91406017 GGAAATATAT
91406027 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* *
91406064 TCCGGGTAAGACCCGATGACAACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
91406101 TCCGGGTAAGACCCGATAACTACGTGTGG
1 TCCGGGTAAGACCCGATGACTACGTGTGG
91406130 GGACTATTCG
Statistics
Matches: 62, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 62 1.00
ACGTcount: A:0.24, C:0.20, G:0.32, T:0.23
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:91413447 original size:39 final size:39
Alignment explanation
Indices: 91413393--91413524 Score: 203
Period size: 39 Copynumber: 3.4 Consensus size: 39
91413383 TGCATGGTAT
91413393 TGGAAAAATATCCGGACTTGAAGTCCGCAGGCTTTATGC
1 TGGAAAAATATCCGGACTTGAAGTCCGCAGGCTTTATGC
*
91413432 TGGAAATATATCCGGACTTGAAGTCCGCAGGCTTTATGC
1 TGGAAAAATATCCGGACTTGAAGTCCGCAGGCTTTATGC
* * * *
91413471 TGGAAATATATCCGGACTTAAAGTCCACAGGC-TAAGTGC
1 TGGAAAAATATCCGGACTTGAAGTCCGCAGGCTTTA-TGC
91413510 TGGAAAAATATCCGG
1 TGGAAAAATATCCGG
91413525 GCTAAGTCCC
Statistics
Matches: 87, Mismatches: 5, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
38 2 0.02
39 85 0.98
ACGTcount: A:0.30, C:0.20, G:0.25, T:0.25
Consensus pattern (39 bp):
TGGAAAAATATCCGGACTTGAAGTCCGCAGGCTTTATGC
Found at i:91413549 original size:39 final size:39
Alignment explanation
Indices: 91413517--91413732 Score: 360
Period size: 39 Copynumber: 5.5 Consensus size: 39
91413507 TGCTGGAAAA
91413517 ATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTATT
1 ATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTATT
*
91413556 ATATCCGGGCTAAGTCCTGAAGGCATTCGTGCTGGTATT
1 ATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTATT
* **
91413595 ATATCCAGGCTAAGTCCCGAAGGCATTCGTGCTGGTGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTATT
**
91413634 ATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGCGTT
1 ATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTATT
91413673 ATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTATT
1 ATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTATT
91413712 ATATCCGGGCTTAAAGTCCCG
1 ATATCCGGGC-T-AAGTCCCG
91413733 CATGCTTTGT
Statistics
Matches: 165, Mismatches: 10, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
39 156 0.95
40 1 0.01
41 8 0.05
ACGTcount: A:0.20, C:0.24, G:0.28, T:0.27
Consensus pattern (39 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTATT
Found at i:91413550 original size:78 final size:78
Alignment explanation
Indices: 91413400--91413730 Score: 318
Period size: 78 Copynumber: 4.2 Consensus size: 78
91413390 TATTGGAAAA
* * * * *
91413400 ATATCCGGACTTGAAGTCCGCAGGCTTTA-TGCTGGAAATATATCCGGACTTGAAGT-CCGCAGG
1 ATATCCGGGCTT-AAGTCCACAGGCATTAGTGCTGGAAATATATCCGGGC-T-AAGTCCCGAAGG
** *
91413463 C-TTTATGCTGGAAAT
63 CATTCGTGCTGGTAAT
* * *
91413478 ATATCCGGACTTAAAGTCCACAGGC-TAAGTGCTGGAAAAATATCCGGGCTAAGTCCCGAAGGCA
1 ATATCCGGGCTT-AAGTCCACAGGCATTAGTGCTGGAAATATATCCGGGCTAAGTCCCGAAGGCA
*
91413542 TTCGTGCTGGTATT
65 TTCGTGCTGGTAAT
* * * *
91413556 ATATCCGGGC-TAAGTCCTGA-AGGCATTCGTGCTGGTATTATATCCAGGCTAAGTCCCGAAGGC
1 ATATCCGGGCTTAAGTCC--ACAGGCATTAGTGCTGGAAATATATCCGGGCTAAGTCCCGAAGGC
**
91413619 ATTCGTGCTGGTGCT
64 ATTCGTGCTGGTAAT
* ***
91413634 ATATCCGGGC-TAAGTCC-CGAAGGCATTCGTGCTGGCGTTATATCCGGGCTAAGTCCCGAAGGC
1 ATATCCGGGCTTAAGTCCAC--AGGCATTAGTGCTGGAAATATATCCGGGCTAAGTCCCGAAGGC
*
91413697 ATTCGTGCTGGTATT
64 ATTCGTGCTGGTAAT
91413712 ATATCCGGGCTTAAAGTCC
1 ATATCCGGGCTT-AAGTCC
91413731 CGCATGCTTT
Statistics
Matches: 218, Mismatches: 24, Indels: 20
0.83 0.09 0.08
Matches are distributed among these distances:
76 10 0.05
77 15 0.07
78 186 0.85
79 1 0.00
80 6 0.03
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.27
Consensus pattern (78 bp):
ATATCCGGGCTTAAGTCCACAGGCATTAGTGCTGGAAATATATCCGGGCTAAGTCCCGAAGGCAT
TCGTGCTGGTAAT
Found at i:91413599 original size:117 final size:117
Alignment explanation
Indices: 91413468--91413731 Score: 356
Period size: 117 Copynumber: 2.2 Consensus size: 117
91413458 GCAGGCTTTA
* *
91413468 TGCTGGAAATATATCCGGACTTAAAGT-CCACAGGC-TAAGTGCTGGAAAAATATCCGGGCTAAG
1 TGCTGGTATTATATCCGG-CTTAAAGTCCCA-AGGCATAAGTGCTGGAAAAATATCCGGGCTAAG
* *
91413531 TCCCGAAGGCATTCGTGCTGGTATTATATCCGGGCTAAGTCCTGAAGGCATTCG
64 TCCCGAAGGCATTCGTGCTGGCATTATATCCGGGCTAAGTCCCGAAGGCATTCG
** ****
91413585 TGCTGGTATTATATCCAGGC-T-AAGTCCCGAAGGCATTCGTGCTGGTGCTATATCCGGGCTAAG
1 TGCTGGTATTATATCC-GGCTTAAAGTCCC-AAGGCATAAGTGCTGGAAAAATATCCGGGCTAAG
*
91413648 TCCCGAAGGCATTCGTGCTGGCGTTATATCCGGGCTAAGTCCCGAAGGCATTCG
64 TCCCGAAGGCATTCGTGCTGGCATTATATCCGGGCTAAGTCCCGAAGGCATTCG
91413702 TGCTGGTATTATATCCGGGCTTAAAGTCCC
1 TGCTGGTATTATATCC-GGCTTAAAGTCCC
91413732 GCATGCTTTG
Statistics
Matches: 129, Mismatches: 12, Indels: 10
0.85 0.08 0.07
Matches are distributed among these distances:
115 4 0.03
116 7 0.05
117 108 0.84
118 3 0.02
119 7 0.05
ACGTcount: A:0.23, C:0.23, G:0.27, T:0.27
Consensus pattern (117 bp):
TGCTGGTATTATATCCGGCTTAAAGTCCCAAGGCATAAGTGCTGGAAAAATATCCGGGCTAAGTC
CCGAAGGCATTCGTGCTGGCATTATATCCGGGCTAAGTCCCGAAGGCATTCG
Found at i:91417567 original size:24 final size:23
Alignment explanation
Indices: 91417540--91417587 Score: 69
Period size: 23 Copynumber: 2.0 Consensus size: 23
91417530 AATCCAATAA
*
91417540 AAGAAATTTGTAAAAAAATAAACT
1 AAGAAATTTAT-AAAAAATAAACT
*
91417564 AAGAAATTTATCAAAAATAAACT
1 AAGAAATTTATAAAAAATAAACT
91417587 A
1 A
91417588 TCCAAGCTAT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
23 12 0.55
24 10 0.45
ACGTcount: A:0.62, C:0.06, G:0.06, T:0.25
Consensus pattern (23 bp):
AAGAAATTTATAAAAAATAAACT
Found at i:91425130 original size:27 final size:27
Alignment explanation
Indices: 91425071--91425130 Score: 75
Period size: 27 Copynumber: 2.2 Consensus size: 27
91425061 GGATATAATC
*
91425071 GTCATTCTACCATACAGGGGTATTACA
1 GTCATTCTACCATACAGGGGCATTACA
* * * *
91425098 GCCATTTTACCCTACAGGGGCATTATA
1 GTCATTCTACCATACAGGGGCATTACA
91425125 GTCATT
1 GTCATT
91425131 ATAGTCATTT
Statistics
Matches: 27, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.27, C:0.23, G:0.18, T:0.32
Consensus pattern (27 bp):
GTCATTCTACCATACAGGGGCATTACA
Found at i:91425271 original size:80 final size:80
Alignment explanation
Indices: 91425176--91425467 Score: 308
Period size: 80 Copynumber: 3.6 Consensus size: 80
91425166 TTTACACTAC
** * * *
91425176 CAGGGTATTTCGATAATTTTATGAACCCG-GGGTATTTTGGTAATTTTGCAAA-TTGGGGTATTT
1 CAGGGTATTTCGATAATTTT-CCAAACCGAGGGTATTTTGGTAATTTTACAAACTAGGGGTATTT
*
91425239 CGGTAATTTTTAAAAT
65 TGGTAATTTTTAAAAT
* * * * *
91425255 CGAGGGTATTTTGATAATTTTCCAAATCGAGAGTATTTTGGTAATTTTCCAAACTAAGGGTATTT
1 C-AGGGTATTTCGATAATTTTCCAAACCGAGGGTATTTTGGTAATTTTACAAACTAGGGGTATTT
91425320 TGGTAA-TTTTACAAAT
65 TGGTAATTTTTA-AAAT
* * * * *
91425336 CAAGGTATTTC-AGTAATTTTCCAAACTGTGGGTATTTCGGTAATTTTACAAACTAGTGGTATTT
1 CAGGGTATTTCGA-TAATTTTCCAAACCGAGGGTATTTTGGTAATTTTACAAACTAGGGGTATTT
*
91425400 TGGTAATTTTTCAAAT
65 TGGTAATTTTTAAAAT
* *
91425416 CAGGGGTATTTCGATAATTTTACAAACC-AGGGGTATTTAAGG-AATTTTACAA
1 CA-GGGTATTTCGATAATTTTCCAAACCGA-GGGTATTT-TGGTAATTTTACAA
91425468 TCCGGGGTCT
Statistics
Matches: 177, Mismatches: 26, Indels: 18
0.80 0.12 0.08
Matches are distributed among these distances:
79 6 0.03
80 107 0.60
81 61 0.34
82 3 0.02
ACGTcount: A:0.30, C:0.10, G:0.20, T:0.40
Consensus pattern (80 bp):
CAGGGTATTTCGATAATTTTCCAAACCGAGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTT
GGTAATTTTTAAAAT
Found at i:91425323 original size:107 final size:107
Alignment explanation
Indices: 91425205--91425441 Score: 273
Period size: 107 Copynumber: 2.2 Consensus size: 107
91425195 TATGAACCCG
* *** * * *
91425205 GGGTATTTTGGTAATTTTGCAAATTGGGGTATTTCGGTAATTTTTAAAA-TCGAGGGTATTTTGA
1 GGGTATTTTGGTAATTTTACAAATCAAGGTATTTCAGTAATTTTCAAAACT-GAGGGTATTTCGA
*
91425269 TAATTTTCCAAATCGAG-AGTATTTTGGTAATTTTCCAAA-CTAA
65 TAATTTTACAAA-CGAGTAGTATTTTGGTAATTTTCCAAATC-AA
* * *
91425312 GGGTATTTTGGTAATTTTACAAATCAAGGTATTTCAGTAATTTTCCAAACTGTGGGTATTTCGGT
1 GGGTATTTTGGTAATTTTACAAATCAAGGTATTTCAGTAATTTTCAAAACTGAGGGTATTTCGAT
* * * *
91425377 AATTTTACAAACTAGTGGTATTTTGGTAATTTTTCAAATCAG
66 AATTTTACAAACGAGTAGTATTTTGGTAATTTTCCAAATCAA
* *
91425419 GGGTATTTCGATAATTTTACAAA
1 GGGTATTTTGGTAATTTTACAAA
91425442 CCAGGGGTAT
Statistics
Matches: 110, Mismatches: 17, Indels: 6
0.83 0.13 0.05
Matches are distributed among these distances:
106 3 0.03
107 105 0.95
108 2 0.02
ACGTcount: A:0.30, C:0.09, G:0.19, T:0.42
Consensus pattern (107 bp):
GGGTATTTTGGTAATTTTACAAATCAAGGTATTTCAGTAATTTTCAAAACTGAGGGTATTTCGAT
AATTTTACAAACGAGTAGTATTTTGGTAATTTTCCAAATCAA
Found at i:91425446 original size:27 final size:27
Alignment explanation
Indices: 91425159--91425475 Score: 211
Period size: 27 Copynumber: 11.9 Consensus size: 27
91425149 AAGGGTATCA
* *
91425159 CGGTCATTTTACACTACCA-GGGTATTT
1 CGGTAATTTTACA-AACCAGGGGTATTT
* ** *
91425186 CGATAATTTTATGAACCCGGGGTATTT
1 CGGTAATTTTACAAACCAGGGGTATTT
* * **
91425213 TGGTAATTTTGCAAA-TTGGGGTATTT
1 CGGTAATTTTACAAACCAGGGGTATTT
*
91425239 CGGTAATTTTTA-AAATC-GAGGGTATTT
1 CGGTAA-TTTTACAAACCAG-GGGTATTT
* * * * *
91425266 TGATAATTTTCCAAATC-GAGAGTATTT
1 CGGTAATTTTACAAACCAG-GGGTATTT
* * * *
91425293 TGGTAATTTTCCAAACTAAGGGTATTT
1 CGGTAATTTTACAAACCAGGGGTATTT
* * *
91425320 TGGTAATTTTACAAATCA-AGGTATTT
1 CGGTAATTTTACAAACCAGGGGTATTT
* * *
91425346 CAGTAATTTTCCAAA-CTGTGGGTATTT
1 CGGTAATTTTACAAACCAG-GGGTATTT
* *
91425373 CGGTAATTTTACAAACTAGTGGTATTT
1 CGGTAATTTTACAAACCAGGGGTATTT
* * *
91425400 TGGTAATTTTTCAAATCAGGGGTATTT
1 CGGTAATTTTACAAACCAGGGGTATTT
*
91425427 CGATAATTTTACAAACCAGGGGTATTT
1 CGGTAATTTTACAAACCAGGGGTATTT
* *
91425454 AAGG-AATTTTACAATCC-GGGGT
1 -CGGTAATTTTACAAACCAGGGGT
91425476 CTTAACAACC
Statistics
Matches: 229, Mismatches: 51, Indels: 21
0.76 0.17 0.07
Matches are distributed among these distances:
25 1 0.00
26 49 0.21
27 177 0.77
28 2 0.01
ACGTcount: A:0.29, C:0.12, G:0.20, T:0.39
Consensus pattern (27 bp):
CGGTAATTTTACAAACCAGGGGTATTT
Found at i:91426501 original size:13 final size:13
Alignment explanation
Indices: 91426483--91426559 Score: 93
Period size: 13 Copynumber: 5.9 Consensus size: 13
91426473 AGTTCTTCAT
91426483 TGCTTTTGAAAAG
1 TGCTTTTGAAAAG
91426496 TGCTTTTGAAAAG
1 TGCTTTTGAAAAG
* *
91426509 TGCTGTGGAAAAG
1 TGCTTTTGAAAAG
*
91426522 TGCTTTTGAGAAG
1 TGCTTTTGAAAAG
* *
91426535 TACTTTTGAGAAG
1 TGCTTTTGAAAAG
91426548 TG-TTTTGGAAAA
1 TGCTTTT-GAAAA
91426560 ATTTAAGTGT
Statistics
Matches: 55, Mismatches: 8, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
12 4 0.07
13 51 0.93
ACGTcount: A:0.30, C:0.06, G:0.27, T:0.36
Consensus pattern (13 bp):
TGCTTTTGAAAAG
Found at i:91426541 original size:39 final size:39
Alignment explanation
Indices: 91426483--91426559 Score: 109
Period size: 39 Copynumber: 2.0 Consensus size: 39
91426473 AGTTCTTCAT
*
91426483 TGCTTTTGAAAAGTGCTTTTGAAAAGTGCTGTGGAAAAG
1 TGCTTTTGAAAAGTACTTTTGAAAAGTGCTGTGGAAAAG
* * * *
91426522 TGCTTTTGAGAAGTACTTTTGAGAAGTGTTTTGGAAAA
1 TGCTTTTGAAAAGTACTTTTGAAAAGTGCTGTGGAAAA
91426560 ATTTAAGTGT
Statistics
Matches: 33, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
39 33 1.00
ACGTcount: A:0.30, C:0.06, G:0.27, T:0.36
Consensus pattern (39 bp):
TGCTTTTGAAAAGTACTTTTGAAAAGTGCTGTGGAAAAG
Found at i:91427768 original size:24 final size:24
Alignment explanation
Indices: 91427719--91427769 Score: 59
Period size: 24 Copynumber: 2.1 Consensus size: 24
91427709 ATTTCAAATT
* * *
91427719 TCCTTGATTTTCTCCCGAATCTCC
1 TCCTTGACTTGCTCCCAAATCTCC
91427743 TCCTTGACTTGCTCCACAAATC-CC
1 TCCTTGACTTGCTCC-CAAATCTCC
91427767 TCC
1 TCC
91427770 AAGACCAAAT
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
24 18 0.78
25 5 0.22
ACGTcount: A:0.16, C:0.41, G:0.08, T:0.35
Consensus pattern (24 bp):
TCCTTGACTTGCTCCCAAATCTCC
Found at i:91447529 original size:38 final size:38
Alignment explanation
Indices: 91447459--91447689 Score: 211
Period size: 38 Copynumber: 6.1 Consensus size: 38
91447449 AATCTTGTTA
* * * * *
91447459 AACACTGGCACACA-GCTTGCTAGGCACATAGCCCG-T
1 AACACTAGCACAAAGGCCTGCTAGGCACTTAGCCTGAT
* *
91447495 AAACACCAGCACAAGGGCCTGCTAGGCACTTAGCCTGAT
1 -AACACTAGCACAAAGGCCTGCTAGGCACTTAGCCTGAT
*
91447534 AACACTAGCACAAAGGCCTACTAGGCACTTAGCCTGAT
1 AACACTAGCACAAAGGCCTGCTAGGCACTTAGCCTGAT
* * * *
91447572 AACACTGGTACAAAGGCCTGCTAGGCACTTATCTTGAT
1 AACACTAGCACAAAGGCCTGCTAGGCACTTAGCCTGAT
* * * *
91447610 AACACT-GACACAAAGGCCTACTATGCA-TAAAGCCTAAT
1 AACACTAG-CACAAAGGCCTGCTAGGCACT-TAGCCTGAT
* * * * *
91447648 AACACCAGCACAAA-GCCTTCTAGCCACGTAGCCTCAT
1 AACACTAGCACAAAGGCCTGCTAGGCACTTAGCCTGAT
91447685 AACAC
1 AACAC
91447690 CGTATATACA
Statistics
Matches: 159, Mismatches: 29, Indels: 12
0.80 0.14 0.06
Matches are distributed among these distances:
37 33 0.21
38 124 0.78
39 2 0.01
ACGTcount: A:0.33, C:0.30, G:0.18, T:0.18
Consensus pattern (38 bp):
AACACTAGCACAAAGGCCTGCTAGGCACTTAGCCTGAT
Found at i:91453978 original size:45 final size:44
Alignment explanation
Indices: 91453868--91454019 Score: 189
Period size: 45 Copynumber: 3.4 Consensus size: 44
91453858 AGGAGGAAGA
* * * *
91453868 ATTGGTGGCTTCATTCACAACCTACATAGCAGCTTGTCTACAAA
1 ATTGGTGGCTTCATCCACAACCTACATGGCAGCTTGTCTGCAAT
* * *
91453912 ATTGATGG-TTTATCCACAACCTATATGGCAGCTTGTCTGCAGAT
1 ATTGGTGGCTTCATCCACAACCTACATGGCAGCTTGTCTGCA-AT
** *
91453956 ATTGGTGGCTTCATCCACAACCTACATGATAACTTGTCTGCAAAT
1 ATTGGTGGCTTCATCCACAACCTACATGGCAGCTTGTCTGC-AAT
91454001 ATTGGTGGCTTCATCCACA
1 ATTGGTGGCTTCATCCACA
91454020 TATATTAGAG
Statistics
Matches: 92, Mismatches: 13, Indels: 5
0.84 0.12 0.05
Matches are distributed among these distances:
43 28 0.30
44 15 0.16
45 48 0.52
46 1 0.01
ACGTcount: A:0.27, C:0.24, G:0.18, T:0.32
Consensus pattern (44 bp):
ATTGGTGGCTTCATCCACAACCTACATGGCAGCTTGTCTGCAAT
Found at i:91455682 original size:23 final size:23
Alignment explanation
Indices: 91455655--91455758 Score: 122
Period size: 23 Copynumber: 4.6 Consensus size: 23
91455645 TAAGCTAATG
91455655 AACAGTAAGATCTATTGAGCTGA
1 AACAGTAAGATCTATTGAGCTGA
*
91455678 AACAGTAAGCTCTATTGAGCTG-
1 AACAGTAAGATCTATTGAGCTGA
* *
91455700 AACAGTAAGCTC-ATACGAGCTGA
1 AACAGTAAGATCTAT-TGAGCTGA
* * * *
91455723 AACAGTAAGTTCCAATGATCTGA
1 AACAGTAAGATCTATTGAGCTGA
91455746 AACAGTAAGATCT
1 AACAGTAAGATCT
91455759 TACGAGCTAA
Statistics
Matches: 70, Mismatches: 8, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
21 2 0.03
22 18 0.26
23 49 0.70
24 1 0.01
ACGTcount: A:0.38, C:0.17, G:0.20, T:0.24
Consensus pattern (23 bp):
AACAGTAAGATCTATTGAGCTGA
Found at i:91455705 original size:45 final size:46
Alignment explanation
Indices: 91455653--91455766 Score: 144
Period size: 45 Copynumber: 2.5 Consensus size: 46
91455643 CCTAAGCTAA
* * *
91455653 TGAACAGTAAGATCTAT-TGAGCTGAAACAGTAAGCTCTATTGAGC
1 TGAACAGTAAGATCTATACGAGCTGAAACAGTAAGCTCCAATGAGC
* * *
91455698 TGAACAGTAAGCTC-ATACGAGCTGAAACAGTAAGTTCCAATGATC
1 TGAACAGTAAGATCTATACGAGCTGAAACAGTAAGCTCCAATGAGC
91455743 TGAAACAGTAAGATCT-TACGAGCT
1 TG-AACAGTAAGATCTATACGAGCT
91455767 AATATTTCGA
Statistics
Matches: 59, Mismatches: 7, Indels: 5
0.83 0.10 0.07
Matches are distributed among these distances:
44 2 0.03
45 38 0.64
46 19 0.32
ACGTcount: A:0.37, C:0.18, G:0.21, T:0.25
Consensus pattern (46 bp):
TGAACAGTAAGATCTATACGAGCTGAAACAGTAAGCTCCAATGAGC
Found at i:91463708 original size:14 final size:14
Alignment explanation
Indices: 91463689--91463715 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
91463679 TATCAAACCA
91463689 ATAATTAAGAACAC
1 ATAATTAAGAACAC
91463703 ATAATTAAGAACA
1 ATAATTAAGAACA
91463716 ATTTAAATAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.59, C:0.11, G:0.07, T:0.22
Consensus pattern (14 bp):
ATAATTAAGAACAC
Found at i:91465331 original size:48 final size:48
Alignment explanation
Indices: 91465260--91465357 Score: 196
Period size: 48 Copynumber: 2.0 Consensus size: 48
91465250 ATGCATAATC
91465260 AAGCAAGTTCTAGAATAACAGTTCAATACTGATGCACTCAAAGCAATA
1 AAGCAAGTTCTAGAATAACAGTTCAATACTGATGCACTCAAAGCAATA
91465308 AAGCAAGTTCTAGAATAACAGTTCAATACTGATGCACTCAAAGCAATA
1 AAGCAAGTTCTAGAATAACAGTTCAATACTGATGCACTCAAAGCAATA
91465356 AA
1 AA
91465358 AAAAGTGAGC
Statistics
Matches: 50, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
48 50 1.00
ACGTcount: A:0.45, C:0.18, G:0.14, T:0.22
Consensus pattern (48 bp):
AAGCAAGTTCTAGAATAACAGTTCAATACTGATGCACTCAAAGCAATA
Found at i:91470331 original size:23 final size:23
Alignment explanation
Indices: 91470286--91470389 Score: 140
Period size: 23 Copynumber: 4.5 Consensus size: 23
91470276 TATCGAGCTG
* *
91470286 AACAGTAAGCT-CATACGACCTAA
1 AACAGTAAGCTCCA-ATGAGCTAA
91470309 AAC-GATAAGCTCCAATGAGCTAA
1 AACAG-TAAGCTCCAATGAGCTAA
*
91470332 AACAGTAAGCTCCAATGAGCTGA
1 AACAGTAAGCTCCAATGAGCTAA
91470355 AACAGTAAGCTCCAATGAGCTAA
1 AACAGTAAGCTCCAATGAGCTAA
*
91470378 AATAGTAAGCTC
1 AACAGTAAGCTC
91470390 TTACGAGCTG
Statistics
Matches: 73, Mismatches: 5, Indels: 6
0.87 0.06 0.07
Matches are distributed among these distances:
22 1 0.01
23 69 0.95
24 3 0.04
ACGTcount: A:0.42, C:0.22, G:0.17, T:0.18
Consensus pattern (23 bp):
AACAGTAAGCTCCAATGAGCTAA
Found at i:91474910 original size:47 final size:47
Alignment explanation
Indices: 91474777--91474912 Score: 146
Period size: 47 Copynumber: 2.9 Consensus size: 47
91474767 CCATGGAAAT
** * * * * *
91474777 ATGTGATATGTGATTTCTGTATAAGACCATATCTGAGATATGGCATCG
1 ATGTGATATGTG-TTTCCATATAAGACCATAGCTGGGCTATGACATCA
* * * * *
91474825 GTGTGATATGTGTTTCCCTATAACACTATAGCTAGGCTATGACATCA
1 ATGTGATATGTGTTTCCATATAAGACCATAGCTGGGCTATGACATCA
*
91474872 ATGTGATATGTGCTTCCATATAAGACCATAGCTGGGCTATG
1 ATGTGATATGTGTTTCCATATAAGACCATAGCTGGGCTATG
91474913 GCTTTGGTGT
Statistics
Matches: 71, Mismatches: 17, Indels: 1
0.80 0.19 0.01
Matches are distributed among these distances:
47 60 0.85
48 11 0.15
ACGTcount: A:0.28, C:0.16, G:0.22, T:0.34
Consensus pattern (47 bp):
ATGTGATATGTGTTTCCATATAAGACCATAGCTGGGCTATGACATCA
Found at i:91478020 original size:17 final size:17
Alignment explanation
Indices: 91477998--91478036 Score: 69
Period size: 17 Copynumber: 2.3 Consensus size: 17
91477988 TTATGTGTAG
91477998 AAAATGTAATTTAGTGA
1 AAAATGTAATTTAGTGA
*
91478015 AAAATGTAATTTAGTGT
1 AAAATGTAATTTAGTGA
91478032 AAAAT
1 AAAAT
91478037 AAGTGCTTTT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 21 1.00
ACGTcount: A:0.49, C:0.00, G:0.15, T:0.36
Consensus pattern (17 bp):
AAAATGTAATTTAGTGA
Found at i:91479686 original size:104 final size:104
Alignment explanation
Indices: 91479506--91479772 Score: 455
Period size: 104 Copynumber: 2.6 Consensus size: 104
91479496 TAACCGTTAT
* **
91479506 TGGTGGATCTCGCACTTAGCACCACCGCTGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGGG
1 TGGTGGATATCGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGGG
91479571 AATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATA
66 AATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATA
*
91479610 TGGTGGATATCGCACTTAGCACCACCAATGAACCGGGGAATCAGCACTTAGCAACCCCTCGGGGG
1 TGGTGGATATCGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGGG
91479675 AATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATA
66 AATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATA
* **
91479714 TGGTGGATCA-CGCACATAGCACCACCAATGAATCGGGGAATCAGCACACAGCAACCCCT
1 TGGTGGAT-ATCGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCT
91479773 TTATATACAA
Statistics
Matches: 154, Mismatches: 8, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
104 153 0.99
105 1 0.01
ACGTcount: A:0.30, C:0.31, G:0.21, T:0.18
Consensus pattern (104 bp):
TGGTGGATATCGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGGG
AATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATA
Found at i:91480129 original size:29 final size:29
Alignment explanation
Indices: 91480096--91480159 Score: 76
Period size: 30 Copynumber: 2.2 Consensus size: 29
91480086 TAATCCACCA
91480096 CCCAACTTTTTG-AAAATTACAATTTTGCC
1 CCCAAC-TTTTGCAAAATTACAATTTTGCC
* * *
91480125 CCCAAACTTTTGCATAATTACACTTTTGTC
1 CCC-AACTTTTGCAAAATTACAATTTTGCC
91480155 CCCAA
1 CCCAA
91480160 GCTCGGAAAT
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
29 10 0.33
30 20 0.67
ACGTcount: A:0.30, C:0.28, G:0.06, T:0.36
Consensus pattern (29 bp):
CCCAACTTTTGCAAAATTACAATTTTGCC
Found at i:91480133 original size:30 final size:30
Alignment explanation
Indices: 91480103--91480159 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
91480093 CCACCCAACT
91480103 TTTTG-AAAATTACAATTTTGCCCCCAAAC
1 TTTTGCAAAATTACAATTTTGCCCCCAAAC
* * *
91480132 TTTTGCATAATTACACTTTTGTCCCCAA
1 TTTTGCAAAATTACAATTTTGCCCCCAA
91480160 GCTCGGAAAT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
29 5 0.21
30 19 0.79
ACGTcount: A:0.30, C:0.25, G:0.07, T:0.39
Consensus pattern (30 bp):
TTTTGCAAAATTACAATTTTGCCCCCAAAC
Found at i:91487163 original size:104 final size:104
Alignment explanation
Indices: 91486983--91487249 Score: 455
Period size: 104 Copynumber: 2.6 Consensus size: 104
91486973 TAACCGTTAT
* **
91486983 TGGTGGATCTCGCACTTAGCACCACCGCTGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGGG
1 TGGTGGATATCGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGGG
91487048 AATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATA
66 AATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATA
*
91487087 TGGTGGATATCGCACTTAGCACCACCAATGAACCGGGGAATCAGCACTTAGCAACCCCTCGGGGG
1 TGGTGGATATCGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGGG
91487152 AATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATA
66 AATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATA
* **
91487191 TGGTGGATCA-CGCACATAGCACCACCAATGAATCGGGGAATCAGCACACAGCAACCCCT
1 TGGTGGAT-ATCGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCT
91487250 TTATATACAA
Statistics
Matches: 154, Mismatches: 8, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
104 153 0.99
105 1 0.01
ACGTcount: A:0.30, C:0.31, G:0.21, T:0.18
Consensus pattern (104 bp):
TGGTGGATATCGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGGG
AATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATA
Found at i:91487609 original size:29 final size:29
Alignment explanation
Indices: 91487576--91487639 Score: 76
Period size: 30 Copynumber: 2.2 Consensus size: 29
91487566 TAATCCACCA
91487576 CCCAACTTTTTG-AAAATTACAATTTTGCC
1 CCCAAC-TTTTGCAAAATTACAATTTTGCC
* * *
91487605 CCCAAACTTTTGCATAATTACACTTTTGTC
1 CCC-AACTTTTGCAAAATTACAATTTTGCC
91487635 CCCAA
1 CCCAA
91487640 GCTCGGAAAT
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
29 10 0.33
30 20 0.67
ACGTcount: A:0.30, C:0.28, G:0.06, T:0.36
Consensus pattern (29 bp):
CCCAACTTTTGCAAAATTACAATTTTGCC
Found at i:91487613 original size:30 final size:30
Alignment explanation
Indices: 91487583--91487639 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
91487573 CCACCCAACT
91487583 TTTTG-AAAATTACAATTTTGCCCCCAAAC
1 TTTTGCAAAATTACAATTTTGCCCCCAAAC
* * *
91487612 TTTTGCATAATTACACTTTTGTCCCCAA
1 TTTTGCAAAATTACAATTTTGCCCCCAA
91487640 GCTCGGAAAT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
29 5 0.21
30 19 0.79
ACGTcount: A:0.30, C:0.25, G:0.07, T:0.39
Consensus pattern (30 bp):
TTTTGCAAAATTACAATTTTGCCCCCAAAC
Found at i:91488666 original size:49 final size:50
Alignment explanation
Indices: 91488613--91488727 Score: 133
Period size: 52 Copynumber: 2.3 Consensus size: 50
91488603 CATATGAAGC
* * **
91488613 CCACTTTGAGAAGAGATAAC-TTGGTCATGAGTGTGGTACTATGCAAAAG
1 CCACTTTGTGAAGAGACAACTTTGGTCACAAGTGTGGTACTATGCAAAAG
* ** *
91488662 CCACTTTGTGAAGAAAGACAGCTTTGGTCACAAGTGTGGTACTATGTGAAGG
1 CCACTTTGTGAAG--AGACAACTTTGGTCACAAGTGTGGTACTATGCAAAAG
91488714 CCACTTTGTGAAGA
1 CCACTTTGTGAAGA
91488728 AAGTAGCTTT
Statistics
Matches: 55, Mismatches: 8, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
49 12 0.22
50 1 0.02
51 5 0.09
52 37 0.67
ACGTcount: A:0.30, C:0.16, G:0.27, T:0.27
Consensus pattern (50 bp):
CCACTTTGTGAAGAGACAACTTTGGTCACAAGTGTGGTACTATGCAAAAG
Found at i:91488700 original size:52 final size:51
Alignment explanation
Indices: 91488633--91488758 Score: 155
Period size: 52 Copynumber: 2.5 Consensus size: 51
91488623 AAGAGATAAC
**
91488633 TTGGTCATGAGTGTGGTACTATGCAAAAGCCACTTTGTGAAGAAAGACAGCT
1 TTGGTCACAAGTGTGGTACTATGCAAAAGCCACTTTGTGAAGAAAG-CAGCT
** * *
91488685 TTGGTCACAAGTGTGGTACTATGTGAAGGCCACTTTGTGAAGAAAGTAGCT
1 TTGGTCACAAGTGTGGTACTATGCAAAAGCCACTTTGTGAAGAAAGCAGCT
* *
91488736 TT-GACTACAAGGGTGGTACTATG
1 TTGGTC-ACAAGTGTGGTACTATG
91488759 TGCAGGCCAC
Statistics
Matches: 65, Mismatches: 8, Indels: 3
0.86 0.11 0.04
Matches are distributed among these distances:
50 2 0.03
51 22 0.34
52 41 0.63
ACGTcount: A:0.29, C:0.14, G:0.29, T:0.29
Consensus pattern (51 bp):
TTGGTCACAAGTGTGGTACTATGCAAAAGCCACTTTGTGAAGAAAGCAGCT
Found at i:91488757 original size:51 final size:52
Alignment explanation
Indices: 91488645--91488769 Score: 164
Period size: 51 Copynumber: 2.4 Consensus size: 52
91488635 GGTCATGAGT
** * * *
91488645 GTGGTACTATGCAAAAGCCACTTTGTGAAGAAAGACAGCTTTGGTCACAAGT
1 GTGGTACTATGTGAAGGCCACTTTGTGAAGAAAGACAGCTTTGCTCACAAGG
*
91488697 GTGGTACTATGTGAAGGCCACTTTGTGAAGAAAG-TAGCTTTGACT-ACAAGG
1 GTGGTACTATGTGAAGGCCACTTTGTGAAGAAAGACAGCTTTG-CTCACAAGG
*
91488748 GTGGTACTATGTGCAGGCCACT
1 GTGGTACTATGTGAAGGCCACT
91488770 AGGTATCCGT
Statistics
Matches: 65, Mismatches: 7, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
51 33 0.51
52 32 0.49
ACGTcount: A:0.29, C:0.17, G:0.28, T:0.26
Consensus pattern (52 bp):
GTGGTACTATGTGAAGGCCACTTTGTGAAGAAAGACAGCTTTGCTCACAAGG
Found at i:91489227 original size:30 final size:30
Alignment explanation
Indices: 91489193--91489272 Score: 124
Period size: 30 Copynumber: 2.7 Consensus size: 30
91489183 TGGTTGACAC
91489193 ATCTCTTTTCATAATTTGATAGACAAAGCT
1 ATCTCTTTTCATAATTTGATAGACAAAGCT
* * *
91489223 ATCTCTCTTCATAATTTGATAGCCAAAGTT
1 ATCTCTTTTCATAATTTGATAGACAAAGCT
*
91489253 ATCCCTTTTCATAATTTGAT
1 ATCTCTTTTCATAATTTGAT
91489273 GGTCGTCACA
Statistics
Matches: 45, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 45 1.00
ACGTcount: A:0.30, C:0.19, G:0.09, T:0.42
Consensus pattern (30 bp):
ATCTCTTTTCATAATTTGATAGACAAAGCT
Found at i:91489295 original size:29 final size:30
Alignment explanation
Indices: 91489253--91489324 Score: 119
Period size: 29 Copynumber: 2.4 Consensus size: 30
91489243 AGCCAAAGTT
91489253 ATCCCTTTTCATAATTTGATGGTCGTCA-C
1 ATCCCTTTTCATAATTTGATGGTCGTCACC
*
91489282 ATCCCTTATCATAATTTGATGGTCGTCACC
1 ATCCCTTTTCATAATTTGATGGTCGTCACC
*
91489312 ATCCTTTTTCATA
1 ATCCCTTTTCATA
91489325 GATCAATGTC
Statistics
Matches: 39, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
29 27 0.69
30 12 0.31
ACGTcount: A:0.22, C:0.25, G:0.11, T:0.42
Consensus pattern (30 bp):
ATCCCTTTTCATAATTTGATGGTCGTCACC
Found at i:91489344 original size:30 final size:30
Alignment explanation
Indices: 91489310--91489385 Score: 84
Period size: 30 Copynumber: 2.5 Consensus size: 30
91489300 ATGGTCGTCA
* *
91489310 CCATCCTTTTTCATAGATCAAT-GTCCGAAG
1 CCATCCTTTTTCATAAATCAATAG-CCAAAG
* *
91489340 CCATCCCTTTTCATAAATCGATAGCCAAAG
1 CCATCCTTTTTCATAAATCAATAGCCAAAG
91489370 CCAT-CTCTTTTCATAA
1 CCATCCT-TTTTCATAA
91489386 TTCGGTGGTA
Statistics
Matches: 39, Mismatches: 5, Indels: 4
0.81 0.10 0.08
Matches are distributed among these distances:
29 1 0.03
30 37 0.95
31 1 0.03
ACGTcount: A:0.29, C:0.29, G:0.09, T:0.33
Consensus pattern (30 bp):
CCATCCTTTTTCATAAATCAATAGCCAAAG
Found at i:91495623 original size:27 final size:27
Alignment explanation
Indices: 91495564--91495682 Score: 152
Period size: 27 Copynumber: 4.4 Consensus size: 27
91495554 GAATGGACAC
*
91495564 CAATAATTCTACCCTAC-TGGGTATTT
1 CAATAATTCTACCCTACAGGGGTATTT
*
91495590 CAGTAATTCTACCCTACTA-GGGTATTT
1 CAATAATTCTACCCTAC-AGGGGTATTT
91495617 CAATAATTCTACCCTACAGGGGTATTT
1 CAATAATTCTACCCTACAGGGGTATTT
* * *
91495644 CGATAATTCTACCTTACAGGGGTCTTT
1 CAATAATTCTACCCTACAGGGGTATTT
**
91495671 CGGTAATTCTAC
1 CAATAATTCTAC
91495683 AACTTATCCA
Statistics
Matches: 84, Mismatches: 6, Indels: 5
0.88 0.06 0.05
Matches are distributed among these distances:
26 17 0.20
27 67 0.80
ACGTcount: A:0.26, C:0.23, G:0.15, T:0.36
Consensus pattern (27 bp):
CAATAATTCTACCCTACAGGGGTATTT
Found at i:91502150 original size:26 final size:27
Alignment explanation
Indices: 91502121--91502174 Score: 74
Period size: 27 Copynumber: 2.0 Consensus size: 27
91502111 TCACACAAGT
*
91502121 TAGTCATTT-ACGCACGAGGGGAAAAA
1 TAGTCATTTAACACACGAGGGGAAAAA
* *
91502147 TAGTCATTTAACACCCTAGGGGAAAAA
1 TAGTCATTTAACACACGAGGGGAAAAA
91502174 T
1 T
91502175 GGTAATTTTA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
26 9 0.38
27 15 0.62
ACGTcount: A:0.39, C:0.17, G:0.22, T:0.22
Consensus pattern (27 bp):
TAGTCATTTAACACACGAGGGGAAAAA
Found at i:91502206 original size:27 final size:27
Alignment explanation
Indices: 91502176--91502374 Score: 213
Period size: 27 Copynumber: 7.4 Consensus size: 27
91502166 GGGAAAAATG
* * *
91502176 GTAATTTTACCCCACAAGGGTATCTCA
1 GTAATTCTACCCTACAAGGGTATTTCA
91502203 GTAATTCTACCCTACAAGGGTATTTCA
1 GTAATTCTACCCTACAAGGGTATTTCA
* *
91502230 GTATTTCTACCCTACAAGGGTATTT-T
1 GTAATTCTACCCTACAAGGGTATTTCA
*
91502256 GATAATTCTATCCC-ACAAGGGTATTTCG
1 G-TAATTCTA-CCCTACAAGGGTATTTCA
**
91502284 GTAATTCTACCCTACTGGGGTATTTCA
1 GTAATTCTACCCTACAAGGGTATTTCA
* * **
91502311 ATAATTCTACCCTACAGGGGTATTTTG
1 GTAATTCTACCCTACAAGGGTATTTCA
* * * * *
91502338 GTAATTCCACCTTATAGGGGTATTTCG
1 GTAATTCTACCCTACAAGGGTATTTCA
91502365 GTAATTCTAC
1 GTAATTCTAC
91502375 AACTTATCCA
Statistics
Matches: 148, Mismatches: 20, Indels: 8
0.84 0.11 0.05
Matches are distributed among these distances:
26 4 0.03
27 140 0.95
28 4 0.03
ACGTcount: A:0.26, C:0.21, G:0.17, T:0.36
Consensus pattern (27 bp):
GTAATTCTACCCTACAAGGGTATTTCA
Found at i:91502319 original size:81 final size:80
Alignment explanation
Indices: 91502177--91502374 Score: 252
Period size: 81 Copynumber: 2.4 Consensus size: 80
91502167 GGAAAAATGG
* * * * *
91502177 TAATTTTACCCCACAAGGGTATCTCAGTAATTCTACCCTACAAGGGTATTTCAGTATTTCTACCC
1 TAATTCTA-CCCACAAGGGTATTTCGGTAATTCTACCCTACAAGGGTATTTCAATAATTCTACCC
91502242 TACAAGGGTATTTTGA
65 TACAAGGGTATTTTGA
**
91502258 TAATTCTATCCCACAAGGGTATTTCGGTAATTCTACCCTACTGGGGTATTTCAATAATTCTACCC
1 TAATTCTA-CCCACAAGGGTATTTCGGTAATTCTACCCTACAAGGGTATTTCAATAATTCTACCC
* *
91502323 TACAGGGGTATTTTGG
65 TACAAGGGTATTTTGA
* * * *
91502339 TAATTCCACCTTATAGGGGTATTTCGGTAATTCTAC
1 TAATTCTACC-CACAAGGGTATTTCGGTAATTCTAC
91502375 AACTTATCCA
Statistics
Matches: 102, Mismatches: 14, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
80 2 0.02
81 100 0.98
ACGTcount: A:0.26, C:0.21, G:0.17, T:0.36
Consensus pattern (80 bp):
TAATTCTACCCACAAGGGTATTTCGGTAATTCTACCCTACAAGGGTATTTCAATAATTCTACCCT
ACAAGGGTATTTTGA
Found at i:91507300 original size:39 final size:39
Alignment explanation
Indices: 91507182--91507322 Score: 167
Period size: 39 Copynumber: 3.6 Consensus size: 39
91507172 AACATGTTTT
* *
91507182 TGAGTATTACGATATATGCTTGAATGTTATGTGATTATA
1 TGAGTATTGCGATATATGCTTAAATGTTATGTGATTATA
* * * *
91507221 TAAGTATTGCGATATGTGCTTGAACGTTATGT-ACTTATA
1 TGAGTATTGCGATATATGCTTAAATGTTATGTGA-TTATA
*
91507260 TGAGTATTGTGATATATGCTTAAATGTTATGTGATTATA
1 TGAGTATTGCGATATATGCTTAAATGTTATGTGATTATA
* * * *
91507299 TGTGTAATGTGATATATGATTAAA
1 TGAGTATTGCGATATATGCTTAAA
91507323 AGTGAATACG
Statistics
Matches: 88, Mismatches: 12, Indels: 4
0.85 0.12 0.04
Matches are distributed among these distances:
38 1 0.01
39 86 0.98
40 1 0.01
ACGTcount: A:0.31, C:0.05, G:0.21, T:0.43
Consensus pattern (39 bp):
TGAGTATTGCGATATATGCTTAAATGTTATGTGATTATA
Found at i:91510536 original size:19 final size:19
Alignment explanation
Indices: 91510512--91510557 Score: 83
Period size: 19 Copynumber: 2.4 Consensus size: 19
91510502 ATACATCATG
91510512 AGCTCAGACCAACTCAATA
1 AGCTCAGACCAACTCAATA
*
91510531 AGCTCAGACCAACTCAATG
1 AGCTCAGACCAACTCAATA
91510550 AGCTCAGA
1 AGCTCAGA
91510558 TGTCACATAT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
19 26 1.00
ACGTcount: A:0.39, C:0.30, G:0.15, T:0.15
Consensus pattern (19 bp):
AGCTCAGACCAACTCAATA
Found at i:91513319 original size:7 final size:7
Alignment explanation
Indices: 91513307--91513331 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
91513297 TTCAGTCACA
91513307 TCTCTTC
1 TCTCTTC
91513314 TCTCTTC
1 TCTCTTC
91513321 TCTCTTC
1 TCTCTTC
91513328 TCTC
1 TCTC
91513332 CCTTTCTCCT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.00, C:0.44, G:0.00, T:0.56
Consensus pattern (7 bp):
TCTCTTC
Found at i:91513857 original size:39 final size:39
Alignment explanation
Indices: 91513814--91513900 Score: 102
Period size: 39 Copynumber: 2.2 Consensus size: 39
91513804 CGTTTGAATG
* * *
91513814 AAAAACGGCACCAAAGAACGAGCATTAGCTGCGCTTTTC
1 AAAAACGCCACAAAAGAACGAGCATTAGCGGCGCTTTTC
* ** * *
91513853 AAAAACGCCGCAAAAGATTGAGTATTAGCGGCGCTTTTT
1 AAAAACGCCACAAAAGAACGAGCATTAGCGGCGCTTTTC
91513892 AAAAACGCC
1 AAAAACGCC
91513901 GCTATATGTA
Statistics
Matches: 40, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
39 40 1.00
ACGTcount: A:0.37, C:0.23, G:0.21, T:0.20
Consensus pattern (39 bp):
AAAAACGCCACAAAAGAACGAGCATTAGCGGCGCTTTTC
Found at i:91514485 original size:15 final size:15
Alignment explanation
Indices: 91514465--91514512 Score: 55
Period size: 15 Copynumber: 3.3 Consensus size: 15
91514455 ACTGTTGTAA
91514465 GGTTTATGTATTATG
1 GGTTTATGTATTATG
* *
91514480 GGTTTAGGGATTAT-
1 GGTTTATGTATTATG
91514494 GGTTTATGGT-TTATG
1 GGTTTAT-GTATTATG
91514509 GGTT
1 GGTT
91514513 AAAGGTTAGG
Statistics
Matches: 27, Mismatches: 4, Indels: 4
0.77 0.11 0.11
Matches are distributed among these distances:
14 10 0.37
15 17 0.63
ACGTcount: A:0.17, C:0.00, G:0.33, T:0.50
Consensus pattern (15 bp):
GGTTTATGTATTATG
Found at i:91514549 original size:22 final size:22
Alignment explanation
Indices: 91514516--91514578 Score: 76
Period size: 22 Copynumber: 2.9 Consensus size: 22
91514506 ATGGGTTAAA
91514516 GGTT-AGGGTTTAAGTTTTAGG
1 GGTTAAGGGTTTAAGTTTTAGG
* *
91514537 GTGTT-GGGGTTTAAGGTTTAGG
1 G-GTTAAGGGTTTAAGTTTTAGG
*
91514559 GGTTAAGGGTTTATGTTTTA
1 GGTTAAGGGTTTAAGTTTTA
91514579 TTGTTTAAGG
Statistics
Matches: 35, Mismatches: 5, Indels: 3
0.81 0.12 0.07
Matches are distributed among these distances:
21 4 0.11
22 31 0.89
ACGTcount: A:0.17, C:0.00, G:0.38, T:0.44
Consensus pattern (22 bp):
GGTTAAGGGTTTAAGTTTTAGG
Found at i:91514556 original size:7 final size:7
Alignment explanation
Indices: 91514479--91514601 Score: 68
Period size: 7 Copynumber: 17.3 Consensus size: 7
91514469 TATGTATTAT
91514479 GGGTTTA
1 GGGTTTA
*
91514486 GGGATTA
1 GGGTTTA
*
91514493 TGGTTTA
1 GGGTTTA
*
91514500 TGGTTTA
1 GGGTTTA
*
91514507 TGGGTTAA
1 -GGGTTTA
*
91514515 AGG-TTA
1 GGGTTTA
91514521 GGGTTTA
1 GGGTTTA
* *
91514528 AGTTTTA
1 GGGTTTA
*
91514535 GGGTGTTG
1 GGGT-TTA
91514543 GGGTTTA
1 GGGTTTA
*
91514550 AGGTTTA
1 GGGTTTA
*
91514557 GGGGTTAA
1 -GGGTTTA
91514565 GGGTTTA
1 GGGTTTA
* *
91514572 TGTTTTA
1 GGGTTTA
**
91514579 TTGTTTA
1 GGGTTTA
*
91514586 AGGTTTA
1 GGGTTTA
*
91514593 GGGGTTA
1 GGGTTTA
91514600 GG
1 GG
91514602 AATTCAGGGT
Statistics
Matches: 86, Mismatches: 26, Indels: 8
0.72 0.22 0.07
Matches are distributed among these distances:
6 4 0.05
7 66 0.77
8 16 0.19
ACGTcount: A:0.19, C:0.00, G:0.37, T:0.44
Consensus pattern (7 bp):
GGGTTTA
Found at i:91524148 original size:11 final size:11
Alignment explanation
Indices: 91524132--91524156 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
91524122 TTTCTTTGAG
91524132 TTTTTTTTAAT
1 TTTTTTTTAAT
91524143 TTTTTTTTAAT
1 TTTTTTTTAAT
91524154 TTT
1 TTT
91524157 CAGTATAGGA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.16, C:0.00, G:0.00, T:0.84
Consensus pattern (11 bp):
TTTTTTTTAAT
Found at i:91528644 original size:48 final size:48
Alignment explanation
Indices: 91528573--91528891 Score: 464
Period size: 48 Copynumber: 6.6 Consensus size: 48
91528563 ACGATGCCTC
* * * *
91528573 ATGCTGATGCCATGTTCCAGACATGGTCTTGCACTGGCTCATATAACG
1 ATGCTGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATAACA
*
91528621 ATGCTGATGCCATGACCCAGACATGGTCTTACACTGGCTCACA-ATACA
1 ATGCTGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATA-ACA
* * *
91528669 ATGCCGATGCCATGTCCAAGACATGGTCTTACGCTGGCTCACATAACA
1 ATGCTGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATAACA
* * *
91528717 ATGCCGATGCCATGTCCCAAACATGGTTTTACACTGGCTCACATAACA
1 ATGCTGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATAACA
91528765 ATG-TCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATAACA
1 ATGCT-GATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATAACA
91528813 ATG-TCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATAACA
1 ATGCT-GATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATAACA
* * *
91528861 ATGCCGATGCCATGCCCCAAACATGGTCTTA
1 ATGCTGATGCCATGTCCCAGACATGGTCTTA
91528892 TACGGGATCC
Statistics
Matches: 248, Mismatches: 19, Indels: 8
0.90 0.07 0.03
Matches are distributed among these distances:
47 1 0.00
48 246 0.99
49 1 0.00
ACGTcount: A:0.27, C:0.29, G:0.19, T:0.25
Consensus pattern (48 bp):
ATGCTGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATAACA
Found at i:91531112 original size:13 final size:13
Alignment explanation
Indices: 91531096--91531120 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
91531086 CAAATGAAAT
91531096 TTTCATGAAATCA
1 TTTCATGAAATCA
91531109 TTTCATGAAATC
1 TTTCATGAAATC
91531121 GTAGACCATG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.08, T:0.40
Consensus pattern (13 bp):
TTTCATGAAATCA
Found at i:91538017 original size:22 final size:23
Alignment explanation
Indices: 91537969--91538017 Score: 57
Period size: 22 Copynumber: 2.2 Consensus size: 23
91537959 AGAAAATTTT
*
91537969 GAAATAATTTTAAAATCAAGTGA
1 GAAATAATTTTAAAATCAAGTCA
* *
91537992 -AAATGATTTTCAAA-CAAGTCA
1 GAAATAATTTTAAAATCAAGTCA
91538013 GAAAT
1 GAAAT
91538018 TACTCTAGGC
Statistics
Matches: 22, Mismatches: 3, Indels: 3
0.79 0.11 0.11
Matches are distributed among these distances:
21 6 0.27
22 16 0.73
ACGTcount: A:0.51, C:0.08, G:0.12, T:0.29
Consensus pattern (23 bp):
GAAATAATTTTAAAATCAAGTCA
Found at i:91544535 original size:43 final size:42
Alignment explanation
Indices: 91544488--91544791 Score: 144
Period size: 42 Copynumber: 7.2 Consensus size: 42
91544478 GCAATAAGCT
*
91544488 TGCTAGACTTTTAAGTTCGATATCATTTCACCGGTATTACGCC
1 TGCTAGAC-TTTAAGTCCGATATCATTTCACCGGTATTACGCC
* * * * * * *
91544531 TGCTAGGC-TCAGAGCCCGATA--ATATTCACCAGCT-TAAAGCT
1 TGCTAGACTTTA-AGTCCGATATCAT-TTCACC-GGTATTACGCC
* *
91544572 TGCTAGACCTTTAAGTCCGAAATCATTTCACCGGCATTACGCC
1 TGCTAGA-CTTTAAGTCCGATATCATTTCACCGGTATTACGCC
* * * * * * * *
91544615 TACTAGGC-TCAGAGCCCGATA--ATATTCACCAGCT-TAAAGCT
1 TGCTAGACTTTA-AGTCCGATATCAT-TTCACC-GGTATTACGCC
*
91544656 TGCTAGACCTTTAAGTCCGATATCATTTCACCGGCATTACGCC
1 TGCTAGA-CTTTAAGTCCGATATCATTTCACCGGTATTACGCC
** * * * * * *
91544699 TGCTAGACTTGGAGACTGATA--ATATTCACCAGCT-TAAAGCT
1 TGCTAGACTTTAAGTCCGATATCAT-TTCACC-GGTATTACGCC
** * *
91544740 TGCTAGACCTTTAAGTCTAAAATCATTTCACCGGCATTACGCC
1 TGCTAGA-CTTTAAGTCCGATATCATTTCACCGGTATTACGCC
91544783 TGCTAGACT
1 TGCTAGACT
91544792 CGGAGCCCGA
Statistics
Matches: 184, Mismatches: 55, Indels: 45
0.65 0.19 0.16
Matches are distributed among these distances:
40 6 0.03
41 52 0.28
42 60 0.33
43 60 0.33
44 6 0.03
ACGTcount: A:0.27, C:0.26, G:0.17, T:0.29
Consensus pattern (42 bp):
TGCTAGACTTTAAGTCCGATATCATTTCACCGGTATTACGCC
Found at i:91544576 original size:41 final size:41
Alignment explanation
Indices: 91544531--91544834 Score: 149
Period size: 41 Copynumber: 7.2 Consensus size: 41
91544521 GTATTACGCC
* *
91544531 TGCTAGGCTCAGAGCCCGATAATATTCACCAGCTTAAAGCT
1 TGCTAGCCTTAGAGCCCGATAATATTCACCAGCTTAAAGCT
* * * *
91544572 TGCTAGACCTTTA-AGTCCGA-AATCATTTCACCGGCATT-ACGCC
1 TGCTAG-CC-TTAGAGCCCGATAAT-A-TTCACCAGC-TTAAAGCT
* * *
91544615 TACTAGGCTCAGAGCCCGATAATATTCACCAGCTTAAAGCT
1 TGCTAGCCTTAGAGCCCGATAATATTCACCAGCTTAAAGCT
* * * *
91544656 TGCTAGACCTTTA-AGTCCGAT-ATCATTTCACCGGCATT-ACGCC
1 TGCTAG-CC-TTAGAGCCCGATAAT-A-TTCACCAGC-TTAAAGCT
* * * *
91544699 TGCTAGACTTGGAGACTGATAATATTCACCAGCTTAAAGCT
1 TGCTAGCCTTAGAGCCCGATAATATTCACCAGCTTAAAGCT
* * * * * *
91544740 TGCTAGACCTTTA-AG-TCTAAAATCATTTCACCGGCATT-ACGCC
1 TGCTAG-CC-TTAGAGCCCGATAAT-A-TTCACCAGC-TTAAAGCT
* ** **
91544783 TGCTAGACTCGGAGCCCGATAATATTCAAAAGCTTAAAGCT
1 TGCTAGCCTTAGAGCCCGATAATATTCACCAGCTTAAAGCT
91544824 TGCTAGACCTT
1 TGCTAG-CCTT
91544835 CAAGTCCGAT
Statistics
Matches: 189, Mismatches: 49, Indels: 49
0.66 0.17 0.17
Matches are distributed among these distances:
40 6 0.03
41 68 0.36
42 43 0.23
43 66 0.35
44 6 0.03
ACGTcount: A:0.29, C:0.26, G:0.17, T:0.28
Consensus pattern (41 bp):
TGCTAGCCTTAGAGCCCGATAATATTCACCAGCTTAAAGCT
Found at i:91544579 original size:84 final size:84
Alignment explanation
Indices: 91544483--91544883 Score: 604
Period size: 84 Copynumber: 4.8 Consensus size: 84
91544473 CACCGGCAAT
* * *
91544483 AAGCTTGCTAGACTTTTAAGTTCGATATCATTTCACCGGTATTACGCCTGCTAGGCTCAGAGCCC
1 AAGCTTGCTAGACCTTTAAGTCCGATATCATTTCACCGGCATTACGCCTGCTAGGCTCAGAGCCC
91544548 GATAATATTCACCAGCTTA
66 GATAATATTCACCAGCTTA
* *
91544567 AAGCTTGCTAGACCTTTAAGTCCGAAATCATTTCACCGGCATTACGCCTACTAGGCTCAGAGCCC
1 AAGCTTGCTAGACCTTTAAGTCCGATATCATTTCACCGGCATTACGCCTGCTAGGCTCAGAGCCC
91544632 GATAATATTCACCAGCTTA
66 GATAATATTCACCAGCTTA
* ** * *
91544651 AAGCTTGCTAGACCTTTAAGTCCGATATCATTTCACCGGCATTACGCCTGCTAGACTTGGAGACT
1 AAGCTTGCTAGACCTTTAAGTCCGATATCATTTCACCGGCATTACGCCTGCTAGGCTCAGAGCCC
91544716 GATAATATTCACCAGCTTA
66 GATAATATTCACCAGCTTA
** * * *
91544735 AAGCTTGCTAGACCTTTAAGTCTAAAATCATTTCACCGGCATTACGCCTGCTAGACTCGGAGCCC
1 AAGCTTGCTAGACCTTTAAGTCCGATATCATTTCACCGGCATTACGCCTGCTAGGCTCAGAGCCC
**
91544800 GATAATATTCAAAAGCTTA
66 GATAATATTCACCAGCTTA
* * * * *
91544819 AAGCTTGCTAGACCTTCAAGTCCGATATCATGTCACCGACAATACGCCTGCTAGGCTCAAAGCCC
1 AAGCTTGCTAGACCTTTAAGTCCGATATCATTTCACCGGCATTACGCCTGCTAGGCTCAGAGCCC
91544884 AAAATTCATC
Statistics
Matches: 287, Mismatches: 30, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
84 287 1.00
ACGTcount: A:0.28, C:0.27, G:0.17, T:0.27
Consensus pattern (84 bp):
AAGCTTGCTAGACCTTTAAGTCCGATATCATTTCACCGGCATTACGCCTGCTAGGCTCAGAGCCC
GATAATATTCACCAGCTTA
Found at i:91546792 original size:14 final size:15
Alignment explanation
Indices: 91546763--91546792 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
91546753 CAAAATTAAG
91546763 ACATGATACTTTCAC
1 ACATGATACTTTCAC
91546778 ACATGATAC-TTCAC
1 ACATGATACTTTCAC
91546792 A
1 A
91546793 TATAATAAAC
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 6 0.40
15 9 0.60
ACGTcount: A:0.37, C:0.27, G:0.07, T:0.30
Consensus pattern (15 bp):
ACATGATACTTTCAC
Found at i:91551350 original size:84 final size:84
Alignment explanation
Indices: 91550920--91551320 Score: 597
Period size: 84 Copynumber: 4.8 Consensus size: 84
91550910 CACCGGCAAT
* * *
91550920 AAGCTTGCTAGACTTTTAAGTTCGATATCATTTCACCGGTATTACGCCTGCTAGGCTCAGAGCCC
1 AAGCTTGCTAGACCTTTAAGTCCGATATCATTTCACCGGCATTACGCCTGCTAGGCTCAGAGCCC
91550985 GATAATATTCACCAGCTTA
66 GATAATATTCACCAGCTTA
* * * * *
91551004 AAGCTTGCTAGACCTTTAAGTCCGAAATAATTTCATCGGTATTACGCCTACTAGGCTCAGAGCCC
1 AAGCTTGCTAGACCTTTAAGTCCGATATCATTTCACCGGCATTACGCCTGCTAGGCTCAGAGCCC
91551069 GATAATATTCACCAGCTTA
66 GATAATATTCACCAGCTTA
** * *
91551088 AAGCTTGCTAGACCTTTAAGTCCGATATCATTTCACCGGCATTACGCCTGCTAGGCTTGGAGACT
1 AAGCTTGCTAGACCTTTAAGTCCGATATCATTTCACCGGCATTACGCCTGCTAGGCTCAGAGCCC
91551153 GATAATATTCACCAGCTTA
66 GATAATATTCACCAGCTTA
* * * *
91551172 AAGCTTGATAGACCTTTAAGTCTGACATCATTTCACCAGCATTACGCCTGCTAGGCTC-GAAGCC
1 AAGCTTGCTAGACCTTTAAGTCCGATATCATTTCACCGGCATTACGCCTGCTAGGCTCAG-AGCC
**
91551236 CGATAATATTCAAAAGCTTA
65 CGATAATATTCACCAGCTTA
* * *
91551256 AAGGTTGCTAGACCTTTAAGTCCGATATCATTTCACCGGCATTACGCTTGCTAGGCTCAAAGCCC
1 AAGCTTGCTAGACCTTTAAGTCCGATATCATTTCACCGGCATTACGCCTGCTAGGCTCAGAGCCC
91551321 AAAATTCATC
Statistics
Matches: 284, Mismatches: 31, Indels: 4
0.89 0.10 0.01
Matches are distributed among these distances:
83 1 0.00
84 283 1.00
ACGTcount: A:0.28, C:0.25, G:0.18, T:0.29
Consensus pattern (84 bp):
AAGCTTGCTAGACCTTTAAGTCCGATATCATTTCACCGGCATTACGCCTGCTAGGCTCAGAGCCC
GATAATATTCACCAGCTTA
Found at i:91557415 original size:46 final size:46
Alignment explanation
Indices: 91557362--91557530 Score: 196
Period size: 46 Copynumber: 3.6 Consensus size: 46
91557352 TGTGCTAATC
* *
91557362 TAAGACATGTTTGGGACATGCATCGGCCACAATATGAGAGCTAGTG
1 TAAGACATGTCTGGGACATGCATCGGCCTCAATATGAGAGCTAGTG
* *
91557408 TAAGACATGTCTGGGACATGCATCGGCCTCGAGATATTTA-AGCCAGTG
1 TAAGACATGTCTGGGACATGCATCGGCCTC-A-ATA-TGAGAGCTAGTG
* * * ** * *
91557456 TAAGACATATTTGGGACATGCATCGGCTTTGAGACGAGAGCTAGTG
1 TAAGACATGTCTGGGACATGCATCGGCCTCAATATGAGAGCTAGTG
*
91557502 TAAGACATGTCTAGGACATGCATCGGCCT
1 TAAGACATGTCTGGGACATGCATCGGCCT
91557531 TGAGATAGAC
Statistics
Matches: 102, Mismatches: 17, Indels: 8
0.80 0.13 0.06
Matches are distributed among these distances:
45 1 0.01
46 62 0.61
47 1 0.01
48 36 0.35
49 2 0.02
ACGTcount: A:0.28, C:0.19, G:0.28, T:0.25
Consensus pattern (46 bp):
TAAGACATGTCTGGGACATGCATCGGCCTCAATATGAGAGCTAGTG
Found at i:91557505 original size:94 final size:94
Alignment explanation
Indices: 91557362--91557537 Score: 271
Period size: 94 Copynumber: 1.9 Consensus size: 94
91557352 TGTGCTAATC
* * * *
91557362 TAAGACATGTTTGGGACATGCATCGGCCACAATATGAGAGCTAGTGTAAGACATGTCTGGGACAT
1 TAAGACATATTTGGGACATGCATCGGCCACAAGACGAGAGCTAGTGTAAGACATGTCTAGGACAT
91557427 GCATCGGCCTCGAGATATTTAAGCCAGTG
66 GCATCGGCCTCGAGATATTTAAGCCAGTG
****
91557456 TAAGACATATTTGGGACATGCATCGGCTTTGAGACGAGAGCTAGTGTAAGACATGTCTAGGACAT
1 TAAGACATATTTGGGACATGCATCGGCCACAAGACGAGAGCTAGTGTAAGACATGTCTAGGACAT
*
91557521 GCATCGGCCTTGAGATA
66 GCATCGGCCTCGAGATA
91557538 GACAAGATAG
Statistics
Matches: 73, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
94 73 1.00
ACGTcount: A:0.29, C:0.18, G:0.28, T:0.25
Consensus pattern (94 bp):
TAAGACATATTTGGGACATGCATCGGCCACAAGACGAGAGCTAGTGTAAGACATGTCTAGGACAT
GCATCGGCCTCGAGATATTTAAGCCAGTG
Found at i:91558928 original size:20 final size:21
Alignment explanation
Indices: 91558890--91558928 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
91558880 TTATAAGGAC
91558890 CACACAGGCGTGTTGCCCTTT
1 CACACAGGCGTGTTGCCCTTT
*
91558911 CACACGGGCGTG-TGCCCT
1 CACACAGGCGTGTTGCCCT
91558929 ATTTCAAGAG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 6 0.35
21 11 0.65
ACGTcount: A:0.13, C:0.36, G:0.28, T:0.23
Consensus pattern (21 bp):
CACACAGGCGTGTTGCCCTTT
Found at i:91561224 original size:43 final size:43
Alignment explanation
Indices: 91561199--91561282 Score: 114
Period size: 43 Copynumber: 1.9 Consensus size: 43
91561189 TATTACATAT
* *
91561199 CGATGCCACTGTCCCAAACAAGGTCTTACATGAAATAGATTAA
1 CGATGCCAATGTCCCAAACAAGGTCTTACATGAAATACATTAA
* * *
91561242 CGATGCTAATGTCCCAAACATGGTCTTACATGTAATCACAT
1 CGATGCCAATGTCCCAAACAAGGTCTTACATGAAAT-ACAT
91561283 CTCGGTAACC
Statistics
Matches: 35, Mismatches: 5, Indels: 1
0.85 0.12 0.02
Matches are distributed among these distances:
43 32 0.91
44 3 0.09
ACGTcount: A:0.35, C:0.24, G:0.15, T:0.26
Consensus pattern (43 bp):
CGATGCCAATGTCCCAAACAAGGTCTTACATGAAATACATTAA
Found at i:91567543 original size:16 final size:16
Alignment explanation
Indices: 91567522--91567557 Score: 56
Period size: 16 Copynumber: 2.2 Consensus size: 16
91567512 AAAATATTTA
91567522 AAAAAAATA-AATACAT
1 AAAAAAATATAATA-AT
91567538 AAAAAAATATAATAAT
1 AAAAAAATATAATAAT
91567554 AAAA
1 AAAA
91567558 TTACATTTTA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
16 15 0.79
17 4 0.21
ACGTcount: A:0.78, C:0.03, G:0.00, T:0.19
Consensus pattern (16 bp):
AAAAAAATATAATAAT
Found at i:91568272 original size:20 final size:21
Alignment explanation
Indices: 91568248--91568296 Score: 68
Period size: 18 Copynumber: 2.5 Consensus size: 21
91568238 TTTCTTGTCA
*
91568248 ATTTTTTATATTT-TT-TTAT
1 ATTTTTTAAATTTATTATTAT
91568267 A-TTTTTAAATTTATTATTAT
1 ATTTTTTAAATTTATTATTAT
91568287 ATTTTTTAAA
1 ATTTTTTAAA
91568297 AATATTTATG
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
18 10 0.38
19 3 0.12
20 5 0.19
21 8 0.31
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (21 bp):
ATTTTTTAAATTTATTATTAT
Found at i:91568305 original size:22 final size:21
Alignment explanation
Indices: 91568263--91568302 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
91568253 TTATATTTTT
**
91568263 TTATA-TTTTTAAATTTATTA
1 TTATATTTTTTAAAAATATTA
91568283 TTATATTTTTTAAAAATATT
1 TTATATTTTTTAAAAATATT
91568303 TATGTATTTT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 5 0.29
21 12 0.71
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (21 bp):
TTATATTTTTTAAAAATATTA
Found at i:91568789 original size:29 final size:29
Alignment explanation
Indices: 91568733--91568789 Score: 69
Period size: 29 Copynumber: 2.0 Consensus size: 29
91568723 CGAAGAACAA
*** *
91568733 ATGCTTCGCTAAATGTTTTTTTTTAAAAT
1 ATGCTTCGCTAAATGTTAGATTTCAAAAT
*
91568762 ATGCTTCGTTAAATGTTAGATTTCAAAA
1 ATGCTTCGCTAAATGTTAGATTTCAAAA
91568790 GTTCATACAG
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
29 23 1.00
ACGTcount: A:0.32, C:0.11, G:0.12, T:0.46
Consensus pattern (29 bp):
ATGCTTCGCTAAATGTTAGATTTCAAAAT
Found at i:91569090 original size:9 final size:9
Alignment explanation
Indices: 91569076--91569178 Score: 55
Period size: 9 Copynumber: 10.8 Consensus size: 9
91569066 AATTTTTCTA
91569076 ATAAAAATT
1 ATAAAAATT
*
91569085 ATAAAAA-A
1 ATAAAAATT
*
91569093 ATTAAAATTT
1 A-TAAAAATT
*
91569103 TTAAAAATATTT
1 AT-AAAA-A-TT
*
91569115 ATATAAACTT
1 ATA-AAAATT
*
91569125 ATAAAGATT
1 ATAAAAATT
*
91569134 ATAAAACTT
1 ATAAAAATT
*
91569143 ATAAATATT
1 ATAAAAATT
*
91569152 ATAAGAAATAC
1 ATAA-AAAT-T
*
91569163 AAAAAAATT
1 ATAAAAATT
91569172 ATAAAAA
1 ATAAAAA
91569179 AAAGTCTTTT
Statistics
Matches: 68, Mismatches: 18, Indels: 16
0.67 0.18 0.16
Matches are distributed among these distances:
8 1 0.01
9 41 0.60
10 16 0.24
11 4 0.06
12 6 0.09
ACGTcount: A:0.62, C:0.03, G:0.02, T:0.33
Consensus pattern (9 bp):
ATAAAAATT
Found at i:91569142 original size:18 final size:18
Alignment explanation
Indices: 91569113--91569155 Score: 68
Period size: 18 Copynumber: 2.3 Consensus size: 18
91569103 TTAAAAATAT
91569113 TTATATAAACTTATAAAGA
1 TTATA-AAACTTATAAAGA
*
91569132 TTATAAAACTTATAAATA
1 TTATAAAACTTATAAAGA
91569150 TTATAA
1 TTATAA
91569156 GAAATACAAA
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
18 18 0.78
19 5 0.22
ACGTcount: A:0.53, C:0.05, G:0.02, T:0.40
Consensus pattern (18 bp):
TTATAAAACTTATAAAGA
Found at i:91570827 original size:8 final size:8
Alignment explanation
Indices: 91570814--91570843 Score: 51
Period size: 8 Copynumber: 3.6 Consensus size: 8
91570804 TTAACAATTA
91570814 TAAAATAT
1 TAAAATAT
91570822 TAAAATAT
1 TAAAATAT
91570830 TAAAATATT
1 TAAAATA-T
91570839 TAAAA
1 TAAAA
91570844 AAGTATTATA
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
8 15 0.71
9 6 0.29
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (8 bp):
TAAAATAT
Found at i:91571095 original size:17 final size:18
Alignment explanation
Indices: 91571073--91571112 Score: 55
Period size: 19 Copynumber: 2.2 Consensus size: 18
91571063 TTTGTTATCA
*
91571073 CTTTTT-CTTTTTTTTTT
1 CTTTTTCCTTTTTTTATT
91571090 CTTTTTCCCTTTTTTTATT
1 CTTTTT-CCTTTTTTTATT
91571109 CTTT
1 CTTT
91571113 CCTTTCCCTT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
17 6 0.30
19 14 0.70
ACGTcount: A:0.03, C:0.17, G:0.00, T:0.80
Consensus pattern (18 bp):
CTTTTTCCTTTTTTTATT
Done.