Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A06
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 115140250
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2234201 characters in sequence are not A, C, G, or T
File 270 of 345
Found at i:91976301 original size:40 final size:40
Alignment explanation
Indices: 91976244--91976453 Score: 289
Period size: 40 Copynumber: 5.2 Consensus size: 40
91976234 CACAAGGCCG
* * * *
91976244 TCGGGTCTTAGCCCGG-ATATGGTCACTAGCACAAATGCCT
1 TCGGGACTTAGCCCGGAAT-TAGTAACTCGCACAAATGCCT
*
91976284 TTGGGACTTAGCCCGG-ATATAGTAACTCGCACAAATGCCT
1 TCGGGACTTAGCCCGGAAT-TAGTAACTCGCACAAATGCCT
91976324 TCGGGACTTAGCCCGGAATTAGTAACTCGCACAAATGCCT
1 TCGGGACTTAGCCCGGAATTAGTAACTCGCACAAATGCCT
91976364 TCGGGACTTAGCCCGGAATTAGTAACTCGCACAAATGCCT
1 TCGGGACTTAGCCCGGAATTAGTAACTCGCACAAATGCCT
** * * * *
91976404 TCTTGACTTAGCCCGGAATTAATCACTAGCACAAATGTCT
1 TCGGGACTTAGCCCGGAATTAGTAACTCGCACAAATGCCT
91976444 TCGGGACTTA
1 TCGGGACTTA
91976454 ACCCCGTTAG
Statistics
Matches: 155, Mismatches: 14, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
40 153 0.99
41 2 0.01
ACGTcount: A:0.27, C:0.26, G:0.22, T:0.25
Consensus pattern (40 bp):
TCGGGACTTAGCCCGGAATTAGTAACTCGCACAAATGCCT
Found at i:91978609 original size:93 final size:93
Alignment explanation
Indices: 91978352--91978611 Score: 290
Period size: 93 Copynumber: 2.8 Consensus size: 93
91978342 AGCTGTTACA
* * * * *
91978352 ATAGCAGATTACTGCATTGCACTATACCGCACGTACGTTAGCTGCGCTACATACTATTGGT-TGA
1 ATAGCAGATTACCGCATTGCACTGTACCGCAAGTACATTAGCTGCGCTACGTACTATT-GTCTGA
* *
91978416 ACTGACAGTTTTACTGCAAACCTATCGGT
65 ACTGGCAGTTTCACTGCAAACCTATCGGT
* * * * * * * *
91978445 ATAGCAGATTACCGCATTGCACTGTACCGTATGTATATTAGCTGCACAATGTA-TCATTGACAGA
1 ATAGCAGATTACCGCATTGCACTGTACCGCAAGTACATTAGCTGCGCTACGTACT-ATTGTCTGA
* *
91978509 ACAGGCAGTTTCACTGCAAATCTATCGGT
65 ACTGGCAGTTTCACTGCAAACCTATCGGT
* * * *
91978538 ATAGCGGATTACCGCATTACACTGTACCGCAAGTACATTAGCTACGCTACGTACTATTGTCTGAT
1 ATAGCAGATTACCGCATTGCACTGTACCGCAAGTACATTAGCTGCGCTACGTACTATTGTCTGAA
*
91978603 TTGGCAGTT
66 CTGGCAGTT
91978612 CATACTACTT
Statistics
Matches: 134, Mismatches: 30, Indels: 6
0.79 0.18 0.04
Matches are distributed among these distances:
92 2 0.01
93 131 0.98
94 1 0.01
ACGTcount: A:0.28, C:0.23, G:0.20, T:0.30
Consensus pattern (93 bp):
ATAGCAGATTACCGCATTGCACTGTACCGCAAGTACATTAGCTGCGCTACGTACTATTGTCTGAA
CTGGCAGTTTCACTGCAAACCTATCGGT
Found at i:91986800 original size:27 final size:27
Alignment explanation
Indices: 91986759--91986904 Score: 193
Period size: 27 Copynumber: 5.4 Consensus size: 27
91986749 TGGATAAGTT
*
91986759 GTAGAATTATCGAAATACCCCTGTAGG
1 GTAGAATTACCGAAATACCCCTGTAGG
**
91986786 GTAGAATTATTGAAATACCCCTGTAGG
1 GTAGAATTACCGAAATACCCCTGTAGG
*
91986813 ATAGAATTACCGAAATACCCCTGTAGG
1 GTAGAATTACCGAAATACCCCTGTAGG
* *
91986840 ATAGAATTACCAAAATACCCCTGTAGG
1 GTAGAATTACCGAAATACCCCTGTAGG
* * * *
91986867 GTAAAATTACCGAGATACCCTTGTGGG
1 GTAGAATTACCGAAATACCCCTGTAGG
*
91986894 GTAAAATTACC
1 GTAGAATTACC
91986905 ATTTTGCCCC
Statistics
Matches: 108, Mismatches: 11, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 108 1.00
ACGTcount: A:0.36, C:0.19, G:0.20, T:0.25
Consensus pattern (27 bp):
GTAGAATTACCGAAATACCCCTGTAGG
Found at i:91987675 original size:26 final size:27
Alignment explanation
Indices: 91987646--91987705 Score: 77
Period size: 27 Copynumber: 2.3 Consensus size: 27
91987636 CCACATATAT
*
91987646 ATATCTGT-TCTGGTGGCCTAGCCACA
1 ATATCTGTATCTGGTGACCTAGCCACA
* * *
91987672 ATATCTGTATCTGGTGACTTCGTCACA
1 ATATCTGTATCTGGTGACCTAGCCACA
91987699 ATATCTG
1 ATATCTG
91987706 GTAGCCTCGC
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 8 0.28
27 21 0.72
ACGTcount: A:0.22, C:0.23, G:0.20, T:0.35
Consensus pattern (27 bp):
ATATCTGTATCTGGTGACCTAGCCACA
Found at i:91993443 original size:27 final size:27
Alignment explanation
Indices: 91993404--91993548 Score: 191
Period size: 27 Copynumber: 5.4 Consensus size: 27
91993394 TGGATAAGTT
* *
91993404 GTAGAATTATTGAAATACCCCTATAGG
1 GTAGAATTACTGAAATACCCCTGTAGG
** *
91993431 GTAGAATTTTTGAAATACCCTTGTAGG
1 GTAGAATTACTGAAATACCCCTGTAGG
*
91993458 GTAGAATTACCGAAATACCCCTGTAGG
1 GTAGAATTACTGAAATACCCCTGTAGG
* * *
91993485 ATAGAATTACCGAAATACCCTTGTAGG
1 GTAGAATTACTGAAATACCCCTGTAGG
* *
91993512 GTAGAAATACTAAAATACCCCTGTAGG
1 GTAGAATTACTGAAATACCCCTGTAGG
91993539 GTAGAATTAC
1 GTAGAATTAC
91993549 CAAGATACCT
Statistics
Matches: 103, Mismatches: 15, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 103 1.00
ACGTcount: A:0.36, C:0.17, G:0.20, T:0.28
Consensus pattern (27 bp):
GTAGAATTACTGAAATACCCCTGTAGG
Found at i:91993479 original size:54 final size:54
Alignment explanation
Indices: 91993404--91993571 Score: 216
Period size: 54 Copynumber: 3.1 Consensus size: 54
91993394 TGGATAAGTT
* * ***
91993404 GTAGAATTATTGAAATACCCCTATAGGGTAGAATTTTTGAAATACCCTTGTAGG
1 GTAGAATTACTGAAATACCCCTGTAGGGTAGAATTACCGAAATACCCTTGTAGG
* *
91993458 GTAGAATTACCGAAATACCCCTGTAGGATAGAATTACCGAAATACCCTTGTAGG
1 GTAGAATTACTGAAATACCCCTGTAGGGTAGAATTACCGAAATACCCTTGTAGG
* * *
91993512 GTAGAAATACTAAAATACCCCTGTAGGGTAGAATTACC-AAGATA-CCTTGTGGG
1 GTAGAATTACTGAAATACCCCTGTAGGGTAGAATTACCGAA-ATACCCTTGTAGG
91993565 GTA-AATT
1 GTAGAATT
91993572 TACCATTTTG
Statistics
Matches: 100, Mismatches: 13, Indels: 4
0.85 0.11 0.03
Matches are distributed among these distances:
52 3 0.03
53 13 0.13
54 84 0.84
ACGTcount: A:0.35, C:0.16, G:0.21, T:0.28
Consensus pattern (54 bp):
GTAGAATTACTGAAATACCCCTGTAGGGTAGAATTACCGAAATACCCTTGTAGG
Found at i:91994271 original size:27 final size:26
Alignment explanation
Indices: 91994227--91994277 Score: 66
Period size: 27 Copynumber: 1.9 Consensus size: 26
91994217 CTTGCTGCAA
*
91994227 TCTGGTGGCCTCGCCACATATATCTAT
1 TCTGGTGACCTCGCCACA-ATATCTAT
* *
91994254 TCTGGTGACTTCGTCACAATATCT
1 TCTGGTGACCTCGCCACAATATCT
91994278 GACAGCCTCG
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
26 6 0.29
27 15 0.71
ACGTcount: A:0.20, C:0.27, G:0.18, T:0.35
Consensus pattern (26 bp):
TCTGGTGACCTCGCCACAATATCTAT
Found at i:91998745 original size:24 final size:25
Alignment explanation
Indices: 91998696--91998748 Score: 65
Period size: 24 Copynumber: 2.2 Consensus size: 25
91998686 TGTTTGTTTG
* *
91998696 ACTGAAATAATTGATTGACTGATCA
1 ACTGAAATAATTCACTGACTGATCA
91998721 ACTGAAAT-ATTCACTGACT-ATTCA
1 ACTGAAATAATTCACTGACTGA-TCA
91998745 ACTG
1 ACTG
91998749 GAAGTGCTTG
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
23 1 0.04
24 16 0.64
25 8 0.32
ACGTcount: A:0.38, C:0.17, G:0.13, T:0.32
Consensus pattern (25 bp):
ACTGAAATAATTCACTGACTGATCA
Found at i:92004262 original size:23 final size:24
Alignment explanation
Indices: 92004221--92004267 Score: 62
Period size: 24 Copynumber: 2.0 Consensus size: 24
92004211 TAAGTAGATT
92004221 AGAAAATAAAAGAAGTGAATTAAAA
1 AGAAAATAAAAGAAGTGAA-TAAAA
*
92004246 AGAAAA-AAAAGGA-TGAATAAAA
1 AGAAAATAAAAGAAGTGAATAAAA
92004268 TAAGGGAGGA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
22 5 0.24
23 4 0.19
24 6 0.29
25 6 0.29
ACGTcount: A:0.70, C:0.00, G:0.17, T:0.13
Consensus pattern (24 bp):
AGAAAATAAAAGAAGTGAATAAAA
Found at i:92005440 original size:27 final size:27
Alignment explanation
Indices: 92005406--92005583 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
92005396 TAAATTGGAC
92005406 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
92005433 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
92005459 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
92005487 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
92005515 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
92005542 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
92005569 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
92005584 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:92005520 original size:82 final size:81
Alignment explanation
Indices: 92005407--92005562 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
92005397 AAATTGGACA
* *
92005407 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
92005471 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
92005488 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
92005553 TGCGAGTTGA
65 TGCGAATTGA
92005563 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:92005574 original size:82 final size:81
Alignment explanation
Indices: 92005404--92005583 Score: 227
Period size: 82 Copynumber: 2.2 Consensus size: 81
92005394 AGTAAATTGG
* *
92005404 ACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAAG
1 ACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAAG
92005469 TGTGCGAATTGACCAT
66 TGTGCGAATTGACCAT
* * ** *
92005485 GCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACTA
1 ACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACTA
* **
92005549 AGTGTGCGAGTTGATTAT
64 AGTGTGCGAATTGACCAT
* *
92005567 ATAGCACTGAGTGTGCG
1 ACAGCACTAAGTGTGCG
92005584 GACTCAATAT
Statistics
Matches: 83, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 17 0.20
82 66 0.80
ACGTcount: A:0.27, C:0.16, G:0.28, T:0.29
Consensus pattern (81 bp):
ACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAAG
TGTGCGAATTGACCAT
Found at i:92012095 original size:23 final size:24
Alignment explanation
Indices: 92012054--92012100 Score: 62
Period size: 24 Copynumber: 2.0 Consensus size: 24
92012044 TAAGTAGATT
92012054 AGAAAATAAAAGAAGTGAATTAAAA
1 AGAAAATAAAAGAAGTGAA-TAAAA
*
92012079 AGAAAA-AAAAGGA-TGAATAAAA
1 AGAAAATAAAAGAAGTGAATAAAA
92012101 TAAGGGAGGA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
22 5 0.24
23 4 0.19
24 6 0.29
25 6 0.29
ACGTcount: A:0.70, C:0.00, G:0.17, T:0.13
Consensus pattern (24 bp):
AGAAAATAAAAGAAGTGAATAAAA
Found at i:92012828 original size:2 final size:2
Alignment explanation
Indices: 92012821--92012855 Score: 52
Period size: 2 Copynumber: 17.5 Consensus size: 2
92012811 CATATTCGGC
* *
92012821 TA TA TA TA TA TA TA TA TA TA TA TA CA CA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
92012856 GTAAGCCCAT
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.49, C:0.06, G:0.00, T:0.46
Consensus pattern (2 bp):
TA
Found at i:92013274 original size:27 final size:27
Alignment explanation
Indices: 92013238--92013417 Score: 209
Period size: 27 Copynumber: 6.6 Consensus size: 27
92013228 GAGTAAATTG
92013238 GTAGCACTAAGTGTGCGATTTGACTAT
1 GTAGCACTAAGTGTGCGATTTGACTAT
* ** *
92013265 GTTGCACTAAGTGTGCGAAATGAATAT
1 GTAGCACTAAGTGTGCGATTTGACTAT
* *
92013292 G-ATGCACTAAGTGTGCGAATTGACCAT
1 GTA-GCACTAAGTGTGCGATTTGACTAT
**
92013319 GCGGCACTAAGTGTGCGAGTTTGACTAT
1 GTAGCACTAAGTGTGCGA-TTTGACTAT
* *
92013347 GTAGCACTAAGTGTGCGATTTGATTAC
1 GTAGCACTAAGTGTGCGATTTGACTAT
* *
92013374 GTAGCACTAAGTGTGCGAGTTGATTAT
1 GTAGCACTAAGTGTGCGATTTGACTAT
* *
92013401 ATAGCACTGAGTGTGCG
1 GTAGCACTAAGTGTGCG
92013418 GACTCAATAT
Statistics
Matches: 131, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 108 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
GTAGCACTAAGTGTGCGATTTGACTAT
Found at i:92013354 original size:82 final size:81
Alignment explanation
Indices: 92013241--92013396 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
92013231 TAAATTGGTA
* *
92013241 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
92013305 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
92013322 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
92013387 TGCGAGTTGA
65 TGCGAATTGA
92013397 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:92013408 original size:82 final size:81
Alignment explanation
Indices: 92013239--92013417 Score: 225
Period size: 82 Copynumber: 2.2 Consensus size: 81
92013229 AGTAAATTGG
* *
92013239 TAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAAGT
1 TAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAAGT
*
92013304 GTGCGAATTGACCATG
66 GTGCGAATTGACCATA
** ** *
92013320 CGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACTAA
1 TAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACTAA
* **
92013384 GTGTGCGAGTTGATTATA
64 GTGTGCGAATTGACCATA
*
92013402 TAGCACTGAGTGTGCG
1 TAGCACTAAGTGTGCG
92013418 GACTCAATAT
Statistics
Matches: 82, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 16 0.20
82 66 0.80
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAAGT
GTGCGAATTGACCATA
Found at i:92015174 original size:62 final size:59
Alignment explanation
Indices: 92015061--92015177 Score: 144
Period size: 62 Copynumber: 1.9 Consensus size: 59
92015051 ATTATTTTAA
* * * * *
92015061 TATTAAATTAATACAATATTTATGAAGATAAATATTAGATTAAGTTTAATATTAAATAT
1 TATTAAAATAATACAATATTTATCAAGATAAACATAAAATTAAGTTTAATATTAAATAT
* *
92015120 TATTAAAATAATAGAATATTTATCTACAAGATAAACATAAAATTAATTTTAATATTAA
1 TATTAAAATAATACAATATTTA--T-CAAGATAAACATAAAATTAAGTTTAATATTAA
92015178 GATAATCAGT
Statistics
Matches: 48, Mismatches: 7, Indels: 3
0.83 0.12 0.05
Matches are distributed among these distances:
59 20 0.42
61 1 0.02
62 27 0.56
ACGTcount: A:0.51, C:0.03, G:0.05, T:0.40
Consensus pattern (59 bp):
TATTAAAATAATACAATATTTATCAAGATAAACATAAAATTAAGTTTAATATTAAATAT
Found at i:92019958 original size:85 final size:85
Alignment explanation
Indices: 92019815--92019993 Score: 349
Period size: 85 Copynumber: 2.1 Consensus size: 85
92019805 GGCCGGCCAT
92019815 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
1 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
92019880 GTAAGGATTAATAAAATAAA
66 GTAAGGATTAATAAAATAAA
92019900 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
1 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
92019965 GTAAGGATTAATAAAATAAA
66 GTAAGGATTAATAAAATAAA
*
92019985 GGGCATGGG
1 GAGCATGGG
92019994 CAATAAAATA
Statistics
Matches: 93, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
85 93 1.00
ACGTcount: A:0.37, C:0.08, G:0.28, T:0.26
Consensus pattern (85 bp):
GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
GTAAGGATTAATAAAATAAA
Found at i:92022225 original size:47 final size:47
Alignment explanation
Indices: 92022174--92022753 Score: 820
Period size: 47 Copynumber: 12.1 Consensus size: 47
92022164 TTAGGATTTT
*
92022174 ATGTGATGGATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
*** *
92022221 ATGTGATGAATGTGAACCCGTATATATATGGGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAA--C--ATGCGTATGTGTGATAAGGCCGAATGGCCA
92022272 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
* *
92022319 CTGTGATGGATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
***
92022366 ATGTGATGAATGTGAACCCGTATATATATG-GTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAA--C--ATGCGTATGTGTGATAAGGCCGAATGGCCA
92022416 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
* *
92022463 CTGTGATGGATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
92022510 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
** *
92022557 ATGTGATGAATGTGAACATGTATATATATATGCGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATG------CGTATGTGTGATAAGGCCGAATGGCCA
92022610 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
* * *
92022657 ATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
** * * *
92022704 ATGTGATGAATGTGAACATGAATATATGTGGTAAGGCCGAATGGCTA
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
92022751 ATG
1 ATG
92022754 CGAAACGTGT
Statistics
Matches: 482, Mismatches: 36, Indels: 30
0.88 0.07 0.05
Matches are distributed among these distances:
46 6 0.01
47 344 0.71
48 1 0.00
49 3 0.01
50 36 0.07
51 48 0.10
53 44 0.09
ACGTcount: A:0.31, C:0.13, G:0.31, T:0.26
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
Found at i:92022816 original size:46 final size:46
Alignment explanation
Indices: 92022727--92022817 Score: 119
Period size: 46 Copynumber: 2.0 Consensus size: 46
92022717 GAACATGAAT
* * * *
92022727 ATATGTGGTAAGGCCGAATGGCTAATGCGAAACGTGTATGAGATGG
1 ATATGTGGTAAAGCCAAATGGCTAATGCGAAACATGTACGAGATGG
* * *
92022773 ATATGTGGTAAAGCCAAATGGCTAATGTGAGATATGTACGAGATG
1 ATATGTGGTAAAGCCAAATGGCTAATGCGAAACATGTACGAGATG
92022818 TGTATATATA
Statistics
Matches: 38, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
46 38 1.00
ACGTcount: A:0.33, C:0.10, G:0.32, T:0.25
Consensus pattern (46 bp):
ATATGTGGTAAAGCCAAATGGCTAATGCGAAACATGTACGAGATGG
Found at i:92023070 original size:37 final size:37
Alignment explanation
Indices: 92022962--92023070 Score: 164
Period size: 37 Copynumber: 2.9 Consensus size: 37
92022952 GGAAATATAT
*
92022962 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
92022999 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
* * * * *
92023036 TCTGGGTAAGACCTGATAACTTCATGTGGAGATTT
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTT
92023071 CGTTTGAGCT
Statistics
Matches: 66, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
37 66 1.00
ACGTcount: A:0.24, C:0.17, G:0.30, T:0.28
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
Found at i:92032672 original size:27 final size:22
Alignment explanation
Indices: 92032618--92032667 Score: 93
Period size: 22 Copynumber: 2.3 Consensus size: 22
92032608 AAACAAATAA
92032618 GAATG-TTAGTTTTCCTGAAGT
1 GAATGATTAGTTTTCCTGAAGT
92032639 GAATGATTAGTTTTCCTGAAGT
1 GAATGATTAGTTTTCCTGAAGT
92032661 GAATGAT
1 GAATGAT
92032668 ATGATGGTGA
Statistics
Matches: 28, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
21 5 0.18
22 23 0.82
ACGTcount: A:0.28, C:0.08, G:0.24, T:0.40
Consensus pattern (22 bp):
GAATGATTAGTTTTCCTGAAGT
Found at i:92037429 original size:68 final size:64
Alignment explanation
Indices: 92037215--92037436 Score: 182
Period size: 64 Copynumber: 3.4 Consensus size: 64
92037205 CATAATTTTG
* ** * * *
92037215 GCTCTCTTGTGCACATGGTGCACACATAGTATCACCCATGTGACCTAGCCA-CTTTA-TCTCGTA
1 GCTCTCTTGT-CACATGGTGTACACATAGTATCACCCATGCAACCTAGCTACCTCTATTCTCATA
* * * * * * * *
92037278 GCTCTCTTGTTTACATGGTGTCCTTCACCTGGAACCACACATGCAACCTAGCTACATCTA-TCT-
1 GCTCTCTTG-TCACATGGTG---TACACATAGTATCACCCATGCAACCTAGCTACCTCTATTCTC
92037341 AGTA
62 A-TA
92037345 GCTCTCTTGTCTACATGGTGTACACATAGTATCACCCATGCAACCTAGCTACCTCATAATGTCTC
1 GCTCTCTTGTC-ACATGGTGTACACATAGTATCACCCATGCAACCTAGCTACCTC-T-AT-TCTC
92037410 ATA
62 ATA
*
92037413 GCTCTCTTGTACACATGGTATACA
1 GCTCTCTTGT-CACATGGTGTACA
92037437 TCTCGTATTA
Statistics
Matches: 123, Mismatches: 23, Indels: 21
0.74 0.14 0.13
Matches are distributed among these distances:
63 17 0.14
64 29 0.24
65 1 0.01
66 23 0.19
67 25 0.20
68 26 0.21
69 2 0.02
ACGTcount: A:0.24, C:0.29, G:0.15, T:0.31
Consensus pattern (64 bp):
GCTCTCTTGTCACATGGTGTACACATAGTATCACCCATGCAACCTAGCTACCTCTATTCTCATA
Found at i:92037964 original size:30 final size:30
Alignment explanation
Indices: 92037930--92037987 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
92037920 TCCTTAACTC
92037930 AAACTTTGGCAAAATTACAATTTTGCCCTT
1 AAACTTTGGCAAAATTACAATTTTGCCCTT
* * * *
92037960 AAACTTTTGCATATTTACACTTTTGCCC
1 AAACTTTGGCAAAATTACAATTTTGCCC
92037988 CTAGGCTCGG
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.29, C:0.22, G:0.09, T:0.40
Consensus pattern (30 bp):
AAACTTTGGCAAAATTACAATTTTGCCCTT
Found at i:92045668 original size:42 final size:43
Alignment explanation
Indices: 92045567--92045672 Score: 126
Period size: 44 Copynumber: 2.5 Consensus size: 43
92045557 CTGAGATATT
** * *
92045567 GTGTAAGACTGTGTCTGGGACACAGGCCTCGATTTGAGATTTAC
1 GTGTAAGACCATGTCTGGGACACAGGCATCGATCT-AGATTTAC
*
92045611 GTGTAAGACCATGTCTGGGACATAGGCATCGTATCT-GATTT-C
1 GTGTAAGACCATGTCTGGGACACAGGCATCG-ATCTAGATTTAC
*
92045653 GTGTAAGACCCTGTCTGGGA
1 GTGTAAGACCATGTCTGGGA
92045673 TAGAGTCATC
Statistics
Matches: 55, Mismatches: 6, Indels: 4
0.85 0.09 0.06
Matches are distributed among these distances:
42 20 0.36
43 5 0.09
44 27 0.49
45 3 0.05
ACGTcount: A:0.23, C:0.19, G:0.29, T:0.29
Consensus pattern (43 bp):
GTGTAAGACCATGTCTGGGACACAGGCATCGATCTAGATTTAC
Found at i:92058619 original size:39 final size:39
Alignment explanation
Indices: 92058576--92058659 Score: 141
Period size: 39 Copynumber: 2.2 Consensus size: 39
92058566 GTAATTAGCT
*
92058576 TGCTAGGTATAAACCTGAACTTATCACCGGCACGAGGCC
1 TGCTAGGTATAAACCTGAACTTATCACCAGCACGAGGCC
* *
92058615 TGCTAGGTATAAACCTGAATTTATCACCAGCAGGAGGCC
1 TGCTAGGTATAAACCTGAACTTATCACCAGCACGAGGCC
92058654 TGCTAG
1 TGCTAG
92058660 ACATTAAATC
Statistics
Matches: 42, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
39 42 1.00
ACGTcount: A:0.29, C:0.25, G:0.24, T:0.23
Consensus pattern (39 bp):
TGCTAGGTATAAACCTGAACTTATCACCAGCACGAGGCC
Found at i:92064466 original size:39 final size:40
Alignment explanation
Indices: 92064389--92064535 Score: 120
Period size: 40 Copynumber: 3.7 Consensus size: 40
92064379 TAGCTCCTCG
* * *
92064389 TTCAAGTGCCTTCGGGACATAGCCCGG-TTATAGTAACTCA
1 TTCAA-TGCCTTCGGGACTTAACCCGGATTATAGAAACTCA
* *
92064429 TTCAATGCCTTCGGGACTTAACCCGGATTTTA-AAACTCG
1 TTCAATGCCTTCGGGACTTAACCCGGATTATAGAAACTCA
** * * * *
92064468 CACGAATGCCTTCGGGACTTAACCCGGAAT-TAGTATCTCG
1 TTC-AATGCCTTCGGGACTTAACCCGGATTATAGAAACTCA
** *
92064508 CACAAAGGCCTTCGGGACTTAACCCGGA
1 TTC-AATGCCTTCGGGACTTAACCCGGA
92064536 ATTAATAACT
Statistics
Matches: 92, Mismatches: 12, Indels: 6
0.84 0.11 0.05
Matches are distributed among these distances:
39 27 0.29
40 65 0.71
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
TTCAATGCCTTCGGGACTTAACCCGGATTATAGAAACTCA
Found at i:92064546 original size:80 final size:80
Alignment explanation
Indices: 92064435--92064615 Score: 219
Period size: 80 Copynumber: 2.3 Consensus size: 80
92064425 CTCATTCAAT
* * *
92064435 GCCTTCGGGACTTAACCCGGATTTTAAAACTCGCACGAATGCCTTCGGGA-CTTAACCCGGA-AT
1 GCCTTCGGGACTTAACCCGGATATTAAAACTCGCACAAATACCTTC-GGATCTTAACCCGGATA-
*
92064498 TAGT-A-TCTCGCACAAA
64 TAGTCACT-TAGCACAAA
**
92064514 GGCCTTCGGGACTTAACCCGGA-ATTAATAACTCGCACAAATACCTTCGGATCTTAGTCCGGATA
1 -GCCTTCGGGACTTAACCCGGATATTAA-AACTCGCACAAATACCTTCGGATCTTAACCCGGATA
92064578 TAGTCACTTAGCACAAA
64 TAGTCACTTAGCACAAA
*
92064595 GCCTTCGGGACTTAGCCCGGA
1 GCCTTCGGGACTTAACCCGGA
92064616 CAGCATTCAA
Statistics
Matches: 89, Mismatches: 7, Indels: 10
0.84 0.07 0.09
Matches are distributed among these distances:
79 7 0.08
80 71 0.80
81 10 0.11
82 1 0.01
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.24
Consensus pattern (80 bp):
GCCTTCGGGACTTAACCCGGATATTAAAACTCGCACAAATACCTTCGGATCTTAACCCGGATATA
GTCACTTAGCACAAA
Found at i:92064575 original size:40 final size:40
Alignment explanation
Indices: 92064432--92064615 Score: 196
Period size: 40 Copynumber: 4.6 Consensus size: 40
92064422 TAACTCATTC
* *
92064432 AATGCCTTCGGGACTTAACCCGGATTTTAA-AACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGA-ATTAATAACTCGCACA
* *
92064472 AATGCCTTCGGGACTTAACCCGGAATTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
*
92064512 AAGGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
1 AATGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
* ** * * *
92064552 AATACCTTC-GGATCTTAGTCCGG-ATATAGTCACTTAGCACA
1 AATGCCTTCGGGA-CTTAACCCGGAAT-TAATAAC-TCGCACA
*
92064593 AA-GCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
92064616 CAGCATTCAA
Statistics
Matches: 122, Mismatches: 16, Indels: 11
0.82 0.11 0.07
Matches are distributed among these distances:
39 8 0.07
40 103 0.84
41 11 0.09
ACGTcount: A:0.28, C:0.27, G:0.21, T:0.24
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
Found at i:92072313 original size:39 final size:40
Alignment explanation
Indices: 92072236--92072342 Score: 119
Period size: 40 Copynumber: 2.7 Consensus size: 40
92072226 TAGCTCCTCG
* * *
92072236 TTCAAGTGCCTTCGGGACATAGCCCGG-TTATATTAACTCA
1 TTCAA-TGCCTTCGGGACTTAACCCGGATTATATAAACTCA
* *
92072276 TTCAATGCCTTCGGGACTTAACCCGGATTTTA-AAACTCG
1 TTCAATGCCTTCGGGACTTAACCCGGATTATATAAACTCA
**
92072315 CACGAATGCCTTCGGGACTTAACCCGGA
1 TTC-AATGCCTTCGGGACTTAACCCGGA
92072343 ATTAGTATCT
Statistics
Matches: 58, Mismatches: 7, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
39 25 0.43
40 33 0.57
ACGTcount: A:0.25, C:0.27, G:0.21, T:0.27
Consensus pattern (40 bp):
TTCAATGCCTTCGGGACTTAACCCGGATTATATAAACTCA
Found at i:92072341 original size:79 final size:80
Alignment explanation
Indices: 92072242--92072462 Score: 193
Period size: 80 Copynumber: 2.8 Consensus size: 80
92072232 CTCGTTCAAG
* * * ** * *
92072242 TGCCTTCGGGACATAGCCCGG-TTATATTAACTCATTC-AATGCCTTCGGGACTTAACCCGGATT
1 TGCCTTCGGGACATAACCCGGAAT-TAGTAACTCACACAAAGGCCTTCGGGACTTAACCCGGA-A
*
92072305 TTAA-AACTCGCACGAA
64 TTAATAACTCGCACAAA
* * *
92072321 TGCCTTCGGGACTTAACCCGGAATTAGTATCTCGCACAAAGGCCTTCGGGACTTAACCCGGAATT
1 TGCCTTCGGGACATAACCCGGAATTAGTAACTCACACAAAGGCCTTCGGGACTTAACCCGGAATT
92072386 AATAACTCGCACAAA
66 AATAACTCGCACAAA
* * ** * * *
92072401 TACCTTC-GGATCTTAGTCCGG-ATATAGTCACTTAGCACAAA-GCCTTCGGGACTTAGCCCGGA
1 TGCCTTCGGGA-CATAACCCGGAAT-TAGTAACTCA-CACAAAGGCCTTCGGGACTTAACCCGGA
92072463 CAGCATTCAA
Statistics
Matches: 117, Mismatches: 19, Indels: 11
0.80 0.13 0.07
Matches are distributed among these distances:
79 36 0.31
80 75 0.64
81 6 0.05
ACGTcount: A:0.27, C:0.27, G:0.20, T:0.25
Consensus pattern (80 bp):
TGCCTTCGGGACATAACCCGGAATTAGTAACTCACACAAAGGCCTTCGGGACTTAACCCGGAATT
AATAACTCGCACAAA
Found at i:92072393 original size:80 final size:80
Alignment explanation
Indices: 92072282--92072462 Score: 219
Period size: 80 Copynumber: 2.3 Consensus size: 80
92072272 CTCATTCAAT
* * *
92072282 GCCTTCGGGACTTAACCCGGATTTTAAAACTCGCACGAATGCCTTCGGGA-CTTAACCCGGA-AT
1 GCCTTCGGGACTTAACCCGGATATTAAAACTCGCACAAATACCTTC-GGATCTTAACCCGGATA-
*
92072345 TAGT-A-TCTCGCACAAA
64 TAGTCACT-TAGCACAAA
**
92072361 GGCCTTCGGGACTTAACCCGGA-ATTAATAACTCGCACAAATACCTTCGGATCTTAGTCCGGATA
1 -GCCTTCGGGACTTAACCCGGATATTAA-AACTCGCACAAATACCTTCGGATCTTAACCCGGATA
92072425 TAGTCACTTAGCACAAA
64 TAGTCACTTAGCACAAA
*
92072442 GCCTTCGGGACTTAGCCCGGA
1 GCCTTCGGGACTTAACCCGGA
92072463 CAGCATTCAA
Statistics
Matches: 89, Mismatches: 7, Indels: 10
0.84 0.07 0.09
Matches are distributed among these distances:
79 7 0.08
80 71 0.80
81 10 0.11
82 1 0.01
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.24
Consensus pattern (80 bp):
GCCTTCGGGACTTAACCCGGATATTAAAACTCGCACAAATACCTTCGGATCTTAACCCGGATATA
GTCACTTAGCACAAA
Found at i:92072422 original size:40 final size:40
Alignment explanation
Indices: 92072279--92072462 Score: 196
Period size: 40 Copynumber: 4.6 Consensus size: 40
92072269 TAACTCATTC
* *
92072279 AATGCCTTCGGGACTTAACCCGGATTTTAA-AACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGA-ATTAATAACTCGCACA
* *
92072319 AATGCCTTCGGGACTTAACCCGGAATTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
*
92072359 AAGGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
1 AATGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
* ** * * *
92072399 AATACCTTC-GGATCTTAGTCCGG-ATATAGTCACTTAGCACA
1 AATGCCTTCGGGA-CTTAACCCGGAAT-TAATAAC-TCGCACA
*
92072440 AA-GCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
92072463 CAGCATTCAA
Statistics
Matches: 122, Mismatches: 16, Indels: 11
0.82 0.11 0.07
Matches are distributed among these distances:
39 8 0.07
40 103 0.84
41 11 0.09
ACGTcount: A:0.28, C:0.27, G:0.21, T:0.24
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
Found at i:92074139 original size:39 final size:39
Alignment explanation
Indices: 92073965--92074123 Score: 237
Period size: 39 Copynumber: 4.1 Consensus size: 39
92073955 TGTGAATATA
*
92073965 TATATGCGAGAATTATATCCGGACTTCAGGTCCGTAGGC
1 TATATGCGAGAATTATATCCGGACTTCAGGTCCGCAGGC
* *
92074004 TATAAGCGAGAATTATATCCGGACTTCATGTCCGCAGGC
1 TATATGCGAGAATTATATCCGGACTTCAGGTCCGCAGGC
* * * *
92074043 TATATGCAAGAATTATATCCAGACTTTATGTCCGCAGGC
1 TATATGCGAGAATTATATCCGGACTTCAGGTCCGCAGGC
* *
92074082 TATATGCGAGAATTATATCCGGACTTTAGGTCCGTAGGC
1 TATATGCGAGAATTATATCCGGACTTCAGGTCCGCAGGC
92074121 TAT
1 TAT
92074124 GTGCTGGACA
Statistics
Matches: 109, Mismatches: 11, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
39 109 1.00
ACGTcount: A:0.28, C:0.20, G:0.23, T:0.30
Consensus pattern (39 bp):
TATATGCGAGAATTATATCCGGACTTCAGGTCCGCAGGC
Found at i:92088660 original size:47 final size:47
Alignment explanation
Indices: 92088606--92089159 Score: 948
Period size: 47 Copynumber: 11.7 Consensus size: 47
92088596 TTAGGATTTT
* * *
92088606 ATGTGATGAATGTGAATGTGCATATATGTGATAAGGCCTAATAGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
92088653 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
*
92088700 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGG-TG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAAT-GGCCG
92088747 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
92088794 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCG
*
92088843 ATGTGATGAATGTGAAAGTGTATATATGTGATACGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
92088890 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
*
92088937 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
92088984 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
92089031 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* * * * *
92089078 ATGTGATGAATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCA
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* * *
92089125 ACGTGATGGATGTGAAAGTGTATAAATGTGATAAG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAG
92089160 TCCCGAAGGG
Statistics
Matches: 484, Mismatches: 19, Indels: 8
0.95 0.04 0.02
Matches are distributed among these distances:
46 2 0.00
47 433 0.89
48 2 0.00
49 47 0.10
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.30
Consensus pattern (47 bp):
ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
Found at i:92091020 original size:22 final size:24
Alignment explanation
Indices: 92090995--92091042 Score: 66
Period size: 22 Copynumber: 2.1 Consensus size: 24
92090985 ATTTCTATGC
92090995 TAAATTGATAA-AGAT-T-ATTATA
1 TAAATT-ATAATAGATATAATTATA
92091017 TAAATTATAATAGATATAATTATA
1 TAAATTATAATAGATATAATTATA
92091041 TA
1 TA
92091043 TTAAAGATTA
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
21 4 0.17
22 10 0.43
23 1 0.04
24 8 0.35
ACGTcount: A:0.52, C:0.00, G:0.06, T:0.42
Consensus pattern (24 bp):
TAAATTATAATAGATATAATTATA
Found at i:92091151 original size:13 final size:14
Alignment explanation
Indices: 92091123--92091162 Score: 53
Period size: 14 Copynumber: 2.7 Consensus size: 14
92091113 CTAAAATTGA
92091123 TAATAATTAATATAT
1 TAATAATT-ATATAT
*
92091138 ATTATAATTATATAT
1 -TAATAATTATATAT
92091153 TAATAATTAT
1 TAATAATTAT
92091163 CATTTTTTAT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
14 9 0.41
15 6 0.27
16 7 0.32
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (14 bp):
TAATAATTATATAT
Found at i:92107168 original size:43 final size:43
Alignment explanation
Indices: 92107060--92107185 Score: 132
Period size: 42 Copynumber: 2.9 Consensus size: 43
92107050 AAGACTACGT
* *
92107060 CTGGGAT-GTTGGCATCGACT-TATGATTTACGTGTAAGACCATGT
1 CTGGGATAG-TGGCATCGA-TATTTGATTT-CGTGTAAGACCATGC
* * * *
92107104 CTGAGACATTGGCATCG-TATTTGATTTCGTGTAAGACCTTGC
1 CTGGGATAGTGGCATCGATATTTGATTTCGTGTAAGACCATGC
* *
92107146 CTGGGATAGTGGCATCGATATTTGATTACATGTAAGACCA
1 CTGGGATAGTGGCATCGATATTTGATTTCGTGTAAGACCA
92107186 CGTCTGGGGT
Statistics
Matches: 67, Mismatches: 12, Indels: 7
0.78 0.14 0.08
Matches are distributed among these distances:
42 28 0.42
43 26 0.39
44 13 0.19
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (43 bp):
CTGGGATAGTGGCATCGATATTTGATTTCGTGTAAGACCATGC
Found at i:92112507 original size:29 final size:30
Alignment explanation
Indices: 92112460--92112532 Score: 94
Period size: 29 Copynumber: 2.5 Consensus size: 30
92112450 GCCTAGAGGT
* * *
92112460 AAAATAGTCATTTTTTGAAAGT-TAGGGGC
1 AAAATGGTCATTTTGTGAAAGTCTAAGGGC
* *
92112489 GAAATGGTCATTTTGTGAAAGTCTAAGGTC
1 AAAATGGTCATTTTGTGAAAGTCTAAGGGC
92112519 AAAATGGTCATTTT
1 AAAATGGTCATTTT
92112533 ACCCAAAATA
Statistics
Matches: 37, Mismatches: 6, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
29 19 0.51
30 18 0.49
ACGTcount: A:0.33, C:0.08, G:0.23, T:0.36
Consensus pattern (30 bp):
AAAATGGTCATTTTGTGAAAGTCTAAGGGC
Found at i:92112963 original size:46 final size:48
Alignment explanation
Indices: 92112913--92113087 Score: 160
Period size: 49 Copynumber: 3.6 Consensus size: 48
92112903 CATGAGTGCC
* * * *
92112913 AGTGTAAGACATGTCTGAGACATGCATTGGCATTGAGA-CGA-GAGCT
1 AGTGTAAGACATGTCTGAGACATGCATCGGCATCGAGATAGACAAGCT
* * *
92112959 AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATATACAAGCT
1 AGTGTAAGACATGTCTGAGACATGCATCGGCATCGAGATAGACAAGCT
* * * *
92113007 AGTGTAAGACCTGTCTGAGACATGGCATCGACACCGATAGAT-GA-AAGCC
1 AGTGTAAGACATGTCTGAGACAT-GCATCGGCATCG--AGATAGACAAGCT
* * *
92113056 AGTGTAAGACCTGCCTGGGACATGGCATCGGC
1 AGTGTAAGACATGTCTGAGACAT-GCATCGGC
92113088 CTTGATATAT
Statistics
Matches: 107, Mismatches: 17, Indels: 7
0.82 0.13 0.05
Matches are distributed among these distances:
46 34 0.32
47 1 0.01
48 25 0.23
49 42 0.39
50 1 0.01
51 4 0.04
ACGTcount: A:0.29, C:0.21, G:0.29, T:0.21
Consensus pattern (48 bp):
AGTGTAAGACATGTCTGAGACATGCATCGGCATCGAGATAGACAAGCT
Found at i:92113063 original size:49 final size:48
Alignment explanation
Indices: 92112959--92113328 Score: 338
Period size: 49 Copynumber: 7.6 Consensus size: 48
92112949 GACGAGAGCT
* * * *
92112959 AGTGTAAGACATGTCTGGGACAT-GCATCGGCCTCGAGATAT-ACAAGCT
1 AGTGTAAGACCTGTCTGGGACATGGCATCGACC-CGATATATGA-AAGCC
* *
92113007 AGTGTAAGACCTGTCTGAGACATGGCATCGACACCGATAGATGAAAGCC
1 AGTGTAAGACCTGTCTGGGACATGGCATCGAC-CCGATATATGAAAGCC
* * * *
92113056 AGTGTAAGACCTGCCTGGGACATGGCATCGGCCTTGATATATGAAAGTC
1 AGTGTAAGACCTGTCTGGGACATGGCATCGACC-CGATATATGAAAGCC
* * * * * **
92113105 AGTGTAAGACCTGTTTGGGACACGGTATCGACTTC-A-ATTTGCTAGCC
1 AGTGTAAGACCTGTCTGGGACATGGCATCGAC-CCGATATATGAAAGCC
* *
92113152 AGTTTAAGACCATGTCTGGGACATGGCATCGACACCGATATATGAGAGCC
1 AGTGTAAGACC-TGTCTGGGACATGGCATCGAC-CCGATATATGAAAGCC
* * *
92113202 AGTGTAAGACCTGTCTGGGACATGGCATTGGCCTCGATATATGAAAGTC
1 AGTGTAAGACCTGTCTGGGACATGGCATCGACC-CGATATATGAAAGCC
* * * * **
92113251 AGTGTAAGACCTATCTGGGACATGGTATCGACTTC-A-ATGTGGTAGCC
1 AGTGTAAGACCTGTCTGGGACATGGCATCGAC-CCGATATATGAAAGCC
* *
92113298 AGTGTAAGACTATGTCTGGGATATGGCATCG
1 AGTGTAAGAC-CTGTCTGGGACATGGCATCG
92113329 GCTTTTTATC
Statistics
Matches: 261, Mismatches: 50, Indels: 22
0.78 0.15 0.07
Matches are distributed among these distances:
47 34 0.13
48 60 0.23
49 147 0.56
50 20 0.08
ACGTcount: A:0.28, C:0.20, G:0.28, T:0.25
Consensus pattern (48 bp):
AGTGTAAGACCTGTCTGGGACATGGCATCGACCCGATATATGAAAGCC
Found at i:92113168 original size:146 final size:146
Alignment explanation
Indices: 92113007--92113328 Score: 511
Period size: 146 Copynumber: 2.2 Consensus size: 146
92112997 TATACAAGCT
*
92113007 AGTGTAAGACC-TGTCTGAGACATGGCATCGACACCGATAGATGAAAGCCAGTGTAAGACCTGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGACACCGATAGATGAAAGCCAGTGTAAGACCTGCC
* * *
92113071 TGGGACATGGCATCGGCCTTGATATATGAAAGTCAGTGTAAGACCTGTTTGGGACACGGTATCGA
66 TGGGACATGGCATCGGCCTCGATATATGAAAGTCAGTGTAAGACCTATCTGGGACACGGTATCGA
*
92113136 CTTCAATTTGCTAGCC
131 CTTCAATGTGCTAGCC
* * * *
92113152 AGTTTAAGACCATGTCTGGGACATGGCATCGACACCGATATATGAGAGCCAGTGTAAGACCTGTC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGACACCGATAGATGAAAGCCAGTGTAAGACCTGCC
* *
92113217 TGGGACATGGCATTGGCCTCGATATATGAAAGTCAGTGTAAGACCTATCTGGGACATGGTATCGA
66 TGGGACATGGCATCGGCCTCGATATATGAAAGTCAGTGTAAGACCTATCTGGGACACGGTATCGA
*
92113282 CTTCAATGTGGTAGCC
131 CTTCAATGTGCTAGCC
* *
92113298 AGTGTAAGACTATGTCTGGGATATGGCATCG
1 AGTGTAAGACCATGTCTGGGACATGGCATCG
92113329 GCTTTTTATC
Statistics
Matches: 161, Mismatches: 15, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
145 10 0.06
146 151 0.94
ACGTcount: A:0.27, C:0.20, G:0.28, T:0.25
Consensus pattern (146 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCGACACCGATAGATGAAAGCCAGTGTAAGACCTGCC
TGGGACATGGCATCGGCCTCGATATATGAAAGTCAGTGTAAGACCTATCTGGGACACGGTATCGA
CTTCAATGTGCTAGCC
Found at i:92118425 original size:20 final size:21
Alignment explanation
Indices: 92118386--92118426 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
92118376 GTCATAGTGG
* *
92118386 CTACACGGGCGTGTTGCCCTA
1 CTACACGAGCATGTTGCCCTA
92118407 CTACACGAGCATG-TGCCCTA
1 CTACACGAGCATGTTGCCCTA
92118427 TTTCAAAAAT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
20 7 0.39
21 11 0.61
ACGTcount: A:0.20, C:0.34, G:0.24, T:0.22
Consensus pattern (21 bp):
CTACACGAGCATGTTGCCCTA
Found at i:92131186 original size:17 final size:16
Alignment explanation
Indices: 92131146--92131189 Score: 52
Period size: 17 Copynumber: 2.7 Consensus size: 16
92131136 GTAAAATAGT
*
92131146 AAAAAATAAAATAAAA
1 AAAAAACAAAATAAAA
* *
92131162 TAATAACAAAAGTAAAA
1 AAAAAACAAAA-TAAAA
92131179 AAAAAACAAAA
1 AAAAAACAAAA
92131190 AGGAAAAACA
Statistics
Matches: 22, Mismatches: 5, Indels: 1
0.79 0.18 0.04
Matches are distributed among these distances:
16 8 0.36
17 14 0.64
ACGTcount: A:0.82, C:0.05, G:0.02, T:0.11
Consensus pattern (16 bp):
AAAAAACAAAATAAAA
Found at i:92132151 original size:7 final size:7
Alignment explanation
Indices: 92132139--92132191 Score: 106
Period size: 7 Copynumber: 7.6 Consensus size: 7
92132129 TCTGCTCTGT
92132139 CTCACTG
1 CTCACTG
92132146 CTCACTG
1 CTCACTG
92132153 CTCACTG
1 CTCACTG
92132160 CTCACTG
1 CTCACTG
92132167 CTCACTG
1 CTCACTG
92132174 CTCACTG
1 CTCACTG
92132181 CTCACTG
1 CTCACTG
92132188 CTCA
1 CTCA
92132192 GTCTCACTCA
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 46 1.00
ACGTcount: A:0.15, C:0.43, G:0.13, T:0.28
Consensus pattern (7 bp):
CTCACTG
Found at i:92132165 original size:21 final size:21
Alignment explanation
Indices: 92132139--92132199 Score: 106
Period size: 21 Copynumber: 3.0 Consensus size: 21
92132129 TCTGCTCTGT
92132139 CTCACTGCTCACTGCTCACTG
1 CTCACTGCTCACTGCTCACTG
92132160 CTCACTGCTCACTGCTCACTG
1 CTCACTGCTCACTGCTCACTG
*
92132181 CTCACTGCTCAGT-CTCACT
1 CTCACTGCTCACTGCTCACT
92132200 CACACCCATC
Statistics
Matches: 39, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
20 6 0.15
21 33 0.85
ACGTcount: A:0.15, C:0.43, G:0.13, T:0.30
Consensus pattern (21 bp):
CTCACTGCTCACTGCTCACTG
Found at i:92136212 original size:69 final size:69
Alignment explanation
Indices: 92136090--92136232 Score: 162
Period size: 69 Copynumber: 2.1 Consensus size: 69
92136080 TTTTCTTTTA
* * * * *
92136090 AAAAAGTTAATTTTAATCCTACATTGACTAGAGAATACTTACATAACTCACTTCTTCACTATTTT
1 AAAAAGTTAATTTGAATCCCACATGGACTAGAGAACACTTACATAACTCACTTCTTCACTAATTT
*
92136155 CGTT
66 CATT
* * * * **
92136159 AAAAAGTTAATTTGAATCCCATATGGGCTAGAGAACACTCT-CATAGCTTACTTCTTTGCTAATT
1 AAAAAGTTAATTTGAATCCCACATGGACTAGAGAACACT-TACATAACTCACTTCTTCACTAATT
92136223 TCATT
65 TCATT
92136228 AAAAA
1 AAAAA
92136233 TGAATTTCAA
Statistics
Matches: 61, Mismatches: 12, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
69 60 0.98
70 1 0.02
ACGTcount: A:0.36, C:0.18, G:0.10, T:0.36
Consensus pattern (69 bp):
AAAAAGTTAATTTGAATCCCACATGGACTAGAGAACACTTACATAACTCACTTCTTCACTAATTT
CATT
Found at i:92139023 original size:43 final size:43
Alignment explanation
Indices: 92138952--92139054 Score: 161
Period size: 43 Copynumber: 2.4 Consensus size: 43
92138942 CTATTCAGGC
* * *
92138952 CTTCAAGCCTAGCAGGCTACAATGCCGGTGAGTTAATATTGGG
1 CTTCGAGCCTAGCAGGCTACAATACCGGTGAGTTAATATCGGG
*
92138995 CTTCGAGCCTAGCAGGCTATAATACCGGTGAGTTAATATCGGG
1 CTTCGAGCCTAGCAGGCTACAATACCGGTGAGTTAATATCGGG
*
92139038 CTTCGAGCTTAGCAGGC
1 CTTCGAGCCTAGCAGGC
92139055 GTAATGCCGG
Statistics
Matches: 55, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
43 55 1.00
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.25
Consensus pattern (43 bp):
CTTCGAGCCTAGCAGGCTACAATACCGGTGAGTTAATATCGGG
Found at i:92139666 original size:16 final size:18
Alignment explanation
Indices: 92139635--92139667 Score: 52
Period size: 16 Copynumber: 1.9 Consensus size: 18
92139625 AACTCGTCAC
92139635 ACTATCTATCGTTTTGGT
1 ACTATCTATCGTTTTGGT
92139653 ACTAT-TAT-GTTTTGG
1 ACTATCTATCGTTTTGG
92139668 AATTTGTATG
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 7 0.47
17 3 0.20
18 5 0.33
ACGTcount: A:0.18, C:0.12, G:0.18, T:0.52
Consensus pattern (18 bp):
ACTATCTATCGTTTTGGT
Found at i:92147558 original size:49 final size:50
Alignment explanation
Indices: 92147477--92147650 Score: 242
Period size: 52 Copynumber: 3.4 Consensus size: 50
92147467 AGTGACTCAG
*
92147477 GTGTGGTACTATGTGAAGGCCACTTTGAGAAG-AGATAGCTTGGTCACAA
1 GTGTGGTACTATGTGAAGGCCACTTTGTGAAGAAGATAGCTTGGTCACAA
*
92147526 GTGCGGTACTATGTGAAGGCCACTTTGTGAAGAAAGATAGCTTTGGTCACAA
1 GTGTGGTACTATGTGAAGGCCACTTTGTGAAG-AAGATAGC-TTGGTCACAA
* * * *
92147578 GTGTTGTACTATGTGAAGGCCACTTTGTGAAGAAGATAACTTTGACTACAA
1 GTGTGGTACTATGTGAAGGCCACTTTGTGAAGAAGATAGCTTGGTC-ACAA
* *
92147629 GGGTGGTACTATGTGTAGGCCA
1 GTGTGGTACTATGTGAAGGCCA
92147651 TCGGGTATCA
Statistics
Matches: 111, Mismatches: 10, Indels: 6
0.87 0.08 0.05
Matches are distributed among these distances:
49 30 0.27
50 4 0.04
51 37 0.33
52 40 0.36
ACGTcount: A:0.28, C:0.14, G:0.29, T:0.28
Consensus pattern (50 bp):
GTGTGGTACTATGTGAAGGCCACTTTGTGAAGAAGATAGCTTGGTCACAA
Found at i:92147615 original size:51 final size:51
Alignment explanation
Indices: 92147477--92147650 Score: 246
Period size: 51 Copynumber: 3.4 Consensus size: 51
92147467 AGTGACTCAG
*
92147477 GTGTGGTACTATGTGAAGGCCACTTTGAGAAG-AGATAGC-TTGGTCACAA
1 GTGTGGTACTATGTGAAGGCCACTTTGTGAAGAAGATAGCTTTGGTCACAA
*
92147526 GTGCGGTACTATGTGAAGGCCACTTTGTGAAGAAAGATAGCTTTGGTCACAA
1 GTGTGGTACTATGTGAAGGCCACTTTGTGAAG-AAGATAGCTTTGGTCACAA
* * *
92147578 GTGTTGTACTATGTGAAGGCCACTTTGTGAAGAAGATAACTTT-GACTACAA
1 GTGTGGTACTATGTGAAGGCCACTTTGTGAAGAAGATAGCTTTGGTC-ACAA
* *
92147629 GGGTGGTACTATGTGTAGGCCA
1 GTGTGGTACTATGTGAAGGCCA
92147651 TCGGGTATCA
Statistics
Matches: 112, Mismatches: 9, Indels: 6
0.88 0.07 0.05
Matches are distributed among these distances:
49 30 0.27
50 2 0.02
51 40 0.36
52 40 0.36
ACGTcount: A:0.28, C:0.14, G:0.29, T:0.28
Consensus pattern (51 bp):
GTGTGGTACTATGTGAAGGCCACTTTGTGAAGAAGATAGCTTTGGTCACAA
Found at i:92149841 original size:21 final size:21
Alignment explanation
Indices: 92149799--92149842 Score: 52
Period size: 21 Copynumber: 2.1 Consensus size: 21
92149789 TATATGTTTG
* * * *
92149799 TTCATATTTCCTTTGCACATA
1 TTCACATTTCATTTCCAAATA
92149820 TTCACATTTCATTTCCAAATA
1 TTCACATTTCATTTCCAAATA
92149841 TT
1 TT
92149843 TTTTACCTTT
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.27, C:0.23, G:0.02, T:0.48
Consensus pattern (21 bp):
TTCACATTTCATTTCCAAATA
Found at i:92150071 original size:42 final size:42
Alignment explanation
Indices: 92149970--92150121 Score: 146
Period size: 43 Copynumber: 3.5 Consensus size: 42
92149960 CAATGCCAAC
* * * *
92149970 GTCCCAGACGTGGTCTTACATGTAATCAAATATCGATGCCACT
1 GTCCCAGACATGGTCTTACACGAAATCATATATCGATGCCA-T
* *
92150013 GTCCCAGATAGGGTCTTACACGAAATCATATAT-GATGCCGAT
1 GTCCCAGACATGGTCTTACACGAAATCATATATCGATGCC-AT
* * * *
92150055 GTCCCAGACATTGTCTTACACATAAATC-TCAAATCGATGCCAAC
1 GTCCCAGACATGGTCTTACAC-GAAATCAT-ATATCGATGCC-AT
*
92150099 GTCCCAGACGTGGTCTTACACGA
1 GTCCCAGACATGGTCTTACACGA
92150122 TAACACATAT
Statistics
Matches: 89, Mismatches: 16, Indels: 8
0.79 0.14 0.07
Matches are distributed among these distances:
42 26 0.29
43 37 0.42
44 26 0.29
ACGTcount: A:0.30, C:0.26, G:0.18, T:0.26
Consensus pattern (42 bp):
GTCCCAGACATGGTCTTACACGAAATCATATATCGATGCCAT
Found at i:92154104 original size:22 final size:23
Alignment explanation
Indices: 92154069--92154111 Score: 61
Period size: 22 Copynumber: 1.9 Consensus size: 23
92154059 AATGTTTATT
*
92154069 TTAATTAAAATAATTTTAATCCC
1 TTAATTAAAATAATTTAAATCCC
*
92154092 TTAA-TAAATTAATTTAAATC
1 TTAATTAAAATAATTTAAATC
92154112 TCTCATTGGC
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 14 0.78
23 4 0.22
ACGTcount: A:0.47, C:0.09, G:0.00, T:0.44
Consensus pattern (23 bp):
TTAATTAAAATAATTTAAATCCC
Found at i:92154420 original size:21 final size:22
Alignment explanation
Indices: 92154395--92154436 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
92154385 ACTAATCTCA
92154395 TTAAA-AATTAATTTTAATCCC
1 TTAAAGAATTAATTTTAATCCC
*
92154416 TTAAAGATTTAATTTTAATCC
1 TTAAAGAATTAATTTTAATCC
92154437 TACATTCGCT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 5 0.26
22 14 0.74
ACGTcount: A:0.40, C:0.12, G:0.02, T:0.45
Consensus pattern (22 bp):
TTAAAGAATTAATTTTAATCCC
Found at i:92154735 original size:69 final size:69
Alignment explanation
Indices: 92154607--92154761 Score: 170
Period size: 69 Copynumber: 2.3 Consensus size: 69
92154597 TTTTTTTTGT
* ** *
92154607 TAAAAAGTTAATTTTAATCCCACATTGACTAGAGATTACTCCTATGGCTTACTTCTTCACTACTT
1 TAAAAAGTTAATTTTAATCCCACATTGACTAGAGAATACTCCTATGAATTACTTATTCACTACTT
92154672 TCAA
66 TCAA
* * * * * *
92154676 TAAAAATTTAATTTTTATCCCATATTGACTAGATAATACTCTTAT-AATTCACTTATTCACTATT
1 TAAAAAGTTAATTTTAATCCCACATTGACTAGAGAATACTCCTATGAATT-ACTTATTCACTACT
**
92154740 TTCTG
65 TTCAA
*
92154745 TAAAAA-CTAATTTTAAT
1 TAAAAAGTTAATTTTAAT
92154762 TCCTTAAAAA
Statistics
Matches: 71, Mismatches: 14, Indels: 3
0.81 0.16 0.03
Matches are distributed among these distances:
68 11 0.15
69 60 0.85
ACGTcount: A:0.35, C:0.17, G:0.06, T:0.42
Consensus pattern (69 bp):
TAAAAAGTTAATTTTAATCCCACATTGACTAGAGAATACTCCTATGAATTACTTATTCACTACTT
TCAA
Found at i:92169261 original size:46 final size:45
Alignment explanation
Indices: 92169194--92169357 Score: 145
Period size: 46 Copynumber: 3.6 Consensus size: 45
92169184 TATATGTGCT
* *
92169194 AGTGTAAGACATTTATGGGACATGCATCAGCCACAGCATGAGAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCAGCCACAG-ATGAGAGCC
* *
92169240 AGTGTAAGACATGTCTGGGACATGCATCAGCCTCGAGAT-ATTTAAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCAGCCAC-AGATGA---GAGCC
* * * * * *
92169288 AGTGTAAGACATATTTGGG-CATGCATC-GACATTGAGACGAGAGCT
1 AGTGTAAGACATGTCTGGGACATGCATCAGCCA--CAGATGAGAGCC
*
92169333 AGTGTAAGACATGTCTAGGACATGC
1 AGTGTAAGACATGTCTGGGACATGC
92169358 TTCGGCCTCG
Statistics
Matches: 95, Mismatches: 15, Indels: 16
0.75 0.12 0.13
Matches are distributed among these distances:
45 20 0.21
46 40 0.42
47 13 0.14
48 22 0.23
ACGTcount: A:0.31, C:0.19, G:0.27, T:0.23
Consensus pattern (45 bp):
AGTGTAAGACATGTCTGGGACATGCATCAGCCACAGATGAGAGCC
Found at i:92177658 original size:39 final size:39
Alignment explanation
Indices: 92177600--92177686 Score: 120
Period size: 39 Copynumber: 2.2 Consensus size: 39
92177590 TTCAGTGATG
* * * * *
92177600 TATATCGGGACTTAGGGTCCGCAGGCTATGTGCTGGAAT
1 TATATCCGGACCTAAGGTCCGCAGGCTACGTGCTGGAAA
92177639 TATATCCGGACCTAAGGTCCGCAGGCTACGTGCTGGAAA
1 TATATCCGGACCTAAGGTCCGCAGGCTACGTGCTGGAAA
*
92177678 TATGTCCGG
1 TATATCCGG
92177687 GCTAAAGCCC
Statistics
Matches: 42, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
39 42 1.00
ACGTcount: A:0.22, C:0.22, G:0.31, T:0.25
Consensus pattern (39 bp):
TATATCCGGACCTAAGGTCCGCAGGCTACGTGCTGGAAA
Found at i:92184862 original size:30 final size:30
Alignment explanation
Indices: 92184828--92184887 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
92184818 ATTTAATACG
92184828 AACTTTGGAAAAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
* * *
92184858 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
92184888 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.30, C:0.25, G:0.08, T:0.37
Consensus pattern (30 bp):
AACTTTGGAAAAATTACACTTTTGCCCCTA
Found at i:92191928 original size:92 final size:93
Alignment explanation
Indices: 92191801--92191970 Score: 297
Period size: 92 Copynumber: 1.8 Consensus size: 93
92191791 GCCCATAAGT
*
92191801 GAACTCGGACTCAACTCAACGAGCTCAGGCGTTCGCATCCATAAGTGAACTCGGACTCAACT-AA
1 GAACTCGGACTCAACTCAACGAGCTCAGGCATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
92191865 CGAGTTCGGATGCCTAGTTACATTTCAC
66 CGAGTTCGGATGCCTAGTTACATTTCAC
* * *
92191893 GAACTCGGACTCAACTCAATGAGTTCGGGCATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCAGGCATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
92191958 CGAGTTCGGATGC
66 CGAGTTCGGATGC
92191971 TCAACCATCC
Statistics
Matches: 73, Mismatches: 4, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
92 58 0.79
93 15 0.21
ACGTcount: A:0.28, C:0.28, G:0.22, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCAGGCATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATTTCAC
Found at i:92191965 original size:46 final size:46
Alignment explanation
Indices: 92191793--92191966 Score: 196
Period size: 46 Copynumber: 3.8 Consensus size: 46
92191783 TGTAACCCGC
* * *
92191793 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCAGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCATTCGCAT
*
92191839 CCATAAGTGAACTCGGACTCAACT-AACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG--G-C-A-TTCGCAT
* * * *
92191888 --TTCA-CGAACTCGGACTCAACTCAATGAGTTCGGGCATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCATTCGCAT
92191931 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG
92191967 ATGCTCAACC
Statistics
Matches: 105, Mismatches: 13, Indels: 20
0.76 0.09 0.14
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 1 0.01
45 12 0.11
46 67 0.64
47 13 0.12
48 1 0.01
49 3 0.03
50 2 0.02
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCATTCGCAT
Found at i:92193826 original size:48 final size:47
Alignment explanation
Indices: 92193766--92193885 Score: 150
Period size: 48 Copynumber: 2.5 Consensus size: 47
92193756 TATGTGTGCT
* **
92193766 AGTGTAATACATGTCTAGGACATGCATCGGCCTCGAGATATTTAAGCC
1 AGTGTAAGACATGTCT-GGACATGCATCGGCCTCGAGATATACAAGCC
* * *
92193814 AGTGTAAGACATGTTTGGGACATGCATCGGCCTCGTGATATACAAGCT
1 AGTGTAAGACATGTCT-GGACATGCATCGGCCTCGAGATATACAAGCC
*
92193862 AGTGTAAGACCTGTCTGAGACATG
1 AGTGTAAGACATGTCTG-GACATG
92193886 ATGTCAGCTT
Statistics
Matches: 62, Mismatches: 9, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
47 1 0.02
48 61 0.98
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.27
Consensus pattern (47 bp):
AGTGTAAGACATGTCTGGACATGCATCGGCCTCGAGATATACAAGCC
Found at i:92194007 original size:49 final size:49
Alignment explanation
Indices: 92193909--92194027 Score: 141
Period size: 49 Copynumber: 2.4 Consensus size: 49
92193899 GTGTGTCAGA
* * * *
92193909 GTAAGACATGTCTGGGACATGGCATCGACACTGATGGATGAGAGATAGT
1 GTAAGACCTGTCTGGGACATGGCATCGACACTCATAGATGAAAGATAGT
* * * *
92193958 GTAAGACCTATCTGGGACATGGCATCGGC-CTCACTATATGAAAGCTAGT
1 GTAAGACCTGTCTGGGACATGGCATCGACACTCA-TAGATGAAAGATAGT
92194007 GTAAGACCATGTCTGGGACAT
1 GTAAGACC-TGTCTGGGACAT
92194028 AGCGTCAGCA
Statistics
Matches: 59, Mismatches: 9, Indels: 3
0.83 0.13 0.04
Matches are distributed among these distances:
48 3 0.05
49 45 0.76
50 11 0.19
ACGTcount: A:0.29, C:0.18, G:0.29, T:0.24
Consensus pattern (49 bp):
GTAAGACCTGTCTGGGACATGGCATCGACACTCATAGATGAAAGATAGT
Found at i:92194225 original size:31 final size:31
Alignment explanation
Indices: 92194189--92194251 Score: 126
Period size: 31 Copynumber: 2.0 Consensus size: 31
92194179 GATCAATGTA
92194189 TGCAATATGAGTTGTATTGGATGGTGATGAG
1 TGCAATATGAGTTGTATTGGATGGTGATGAG
92194220 TGCAATATGAGTTGTATTGGATGGTGATGAG
1 TGCAATATGAGTTGTATTGGATGGTGATGAG
92194251 T
1 T
92194252 AAGTTGTACT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.25, C:0.03, G:0.35, T:0.37
Consensus pattern (31 bp):
TGCAATATGAGTTGTATTGGATGGTGATGAG
Found at i:92197056 original size:19 final size:19
Alignment explanation
Indices: 92197032--92197068 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
92197022 GTATTCATAA
* *
92197032 AATTTTAGAATTTTTCATC
1 AATTTTACAACTTTTCATC
92197051 AATTTTACAACTTTTCAT
1 AATTTTACAACTTTTCAT
92197069 TTTAGTCCCT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.32, C:0.14, G:0.03, T:0.51
Consensus pattern (19 bp):
AATTTTACAACTTTTCATC
Found at i:92213319 original size:43 final size:43
Alignment explanation
Indices: 92213249--92213363 Score: 153
Period size: 43 Copynumber: 2.7 Consensus size: 43
92213239 TATCACATAT
* * * *
92213249 CGATGCCACTG-CCCAGACAAGGTCTTACACGAAATC-GATTAA
1 CGATGCCAATGTCCCAGACATGGTCTTACACGAAATCTCAAT-A
*
92213291 CGATGCCAATGTCCCAGACATGGTCTTACACGGAATCTCAATA
1 CGATGCCAATGTCCCAGACATGGTCTTACACGAAATCTCAATA
*
92213334 CAATGCCAATGTCCCAGACATGGTCTTACA
1 CGATGCCAATGTCCCAGACATGGTCTTACA
92213364 TGTAATCACA
Statistics
Matches: 65, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
42 10 0.15
43 53 0.82
44 2 0.03
ACGTcount: A:0.31, C:0.29, G:0.18, T:0.22
Consensus pattern (43 bp):
CGATGCCAATGTCCCAGACATGGTCTTACACGAAATCTCAATA
Found at i:92230363 original size:41 final size:44
Alignment explanation
Indices: 92230318--92230425 Score: 123
Period size: 45 Copynumber: 2.5 Consensus size: 44
92230308 TCCTAGACAG
* *
92230318 GGTCTTACACGAATCA-A-ATA-CGATGCCGATGTCCCAAACAT
1 GGTCTTACACGAACCACATATATCGATGCCAATGTCCCAAACAT
** *
92230359 GGTCTTACACGTAACCACATATATCGATGCCAATGTCCCTGACGT
1 GGTCTTACACG-AACCACATATATCGATGCCAATGTCCCAAACAT
*
92230404 GGTCTTACACGAGAACACATAT
1 GGTCTTACACGA-ACCACATAT
92230426 CAGAAATCTT
Statistics
Matches: 56, Mismatches: 6, Indels: 6
0.82 0.09 0.09
Matches are distributed among these distances:
41 11 0.20
42 4 0.07
43 1 0.02
44 4 0.07
45 36 0.64
ACGTcount: A:0.31, C:0.27, G:0.18, T:0.24
Consensus pattern (44 bp):
GGTCTTACACGAACCACATATATCGATGCCAATGTCCCAAACAT
Found at i:92231566 original size:14 final size:15
Alignment explanation
Indices: 92231549--92231581 Score: 59
Period size: 14 Copynumber: 2.3 Consensus size: 15
92231539 AAAACACAAA
92231549 AAATTCACACAT-AT
1 AAATTCACACATAAT
92231563 AAATTCACACATAAT
1 AAATTCACACATAAT
92231578 AAAT
1 AAAT
92231582 ACTGAAAATA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
14 12 0.67
15 6 0.33
ACGTcount: A:0.55, C:0.18, G:0.00, T:0.27
Consensus pattern (15 bp):
AAATTCACACATAAT
Found at i:92233002 original size:40 final size:42
Alignment explanation
Indices: 92232922--92233017 Score: 114
Period size: 40 Copynumber: 2.4 Consensus size: 42
92232912 TTTTAAATAA
*
92232922 CCAAAGCTA-TCTCGATATCGCACACTTAGTGCCTCATATAG
1 CCAAAGCTATTCTCAATATCGCACACTTAGTGCCTCATATAG
92232963 CCAAAGCTATTC-CAAT-TCGCACACTTAGTG-CT-ATTTATAG
1 CCAAAGCTATTCTCAATATCGCACACTTAGTGCCTCA--TATAG
*
92233003 CCGAAGCTATT-TCAA
1 CCAAAGCTATTCTCAA
92233018 ATCTAACACT
Statistics
Matches: 49, Mismatches: 2, Indels: 9
0.82 0.03 0.15
Matches are distributed among these distances:
38 1 0.02
39 2 0.04
40 32 0.65
41 12 0.24
42 2 0.04
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.29
Consensus pattern (42 bp):
CCAAAGCTATTCTCAATATCGCACACTTAGTGCCTCATATAG
Found at i:92233027 original size:40 final size:40
Alignment explanation
Indices: 92232922--92233034 Score: 104
Period size: 40 Copynumber: 2.8 Consensus size: 40
92232912 TTTTAAATAA
* * *
92232922 CCAAAGCTATCTCGATATCGCACACTTAGTGCCTCA--TATAG
1 CCAAAGCTAT-TCCAAATCGAACACTTAGTG-CT-ATTTATAG
* *
92232963 CCAAAGCTATTCCAATTCGCACACTTAGTGCTATTTATAG
1 CCAAAGCTATTCCAAATCGAACACTTAGTGCTATTTATAG
* * * *
92233003 CCGAAGCTATTTCAAATCTAACACTTATTGCT
1 CCAAAGCTATTCCAAATCGAACACTTAGTGCT
92233035 GAACATAGTC
Statistics
Matches: 61, Mismatches: 9, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
38 1 0.02
39 2 0.03
40 48 0.79
41 10 0.16
ACGTcount: A:0.30, C:0.27, G:0.12, T:0.31
Consensus pattern (40 bp):
CCAAAGCTATTCCAAATCGAACACTTAGTGCTATTTATAG
Found at i:92244615 original size:18 final size:18
Alignment explanation
Indices: 92244592--92244650 Score: 53
Period size: 18 Copynumber: 3.7 Consensus size: 18
92244582 TATTACTGAG
92244592 GGACTACTATAGGTAGTA
1 GGACTACTATAGGTAGTA
92244610 GGACTAC-A-A--T-G--
1 GGACTACTATAGGTAGTA
*
92244621 GAACT-CTATAGGTAGTA
1 GGACTACTATAGGTAGTA
92244638 GGACTACTATAGG
1 GGACTACTATAGG
92244651 GTAAATTGAG
Statistics
Matches: 31, Mismatches: 2, Indels: 16
0.63 0.04 0.33
Matches are distributed among these distances:
10 1 0.03
11 5 0.16
12 1 0.03
13 1 0.03
14 2 0.06
15 1 0.03
16 1 0.03
17 5 0.16
18 14 0.45
ACGTcount: A:0.34, C:0.14, G:0.27, T:0.25
Consensus pattern (18 bp):
GGACTACTATAGGTAGTA
Found at i:92246302 original size:50 final size:51
Alignment explanation
Indices: 92246243--92246371 Score: 161
Period size: 50 Copynumber: 2.5 Consensus size: 51
92246233 ATCTGGTACG
* *
92246243 CATAGTAGCCTGCACTTAGTACTACACACGTGACCTAA-CCATCTAATACA
1 CATAGTAGCCTGCACTTAGTACTACACACGTGACCGAAGCCATCGAATACA
** * * ** *
92246293 TGTAGTAGCCTGCACTTATTACTACACACGTGATCGAAGTTATCGAGTACA
1 CATAGTAGCCTGCACTTAGTACTACACACGTGACCGAAGCCATCGAATACA
*
92246344 CATAGTAGCTTGCACTTAGTACTACACA
1 CATAGTAGCCTGCACTTAGTACTACACA
92246372 TGCGACCTCA
Statistics
Matches: 65, Mismatches: 13, Indels: 1
0.82 0.16 0.01
Matches are distributed among these distances:
50 33 0.51
51 32 0.49
ACGTcount: A:0.32, C:0.26, G:0.16, T:0.27
Consensus pattern (51 bp):
CATAGTAGCCTGCACTTAGTACTACACACGTGACCGAAGCCATCGAATACA
Found at i:92247572 original size:10 final size:10
Alignment explanation
Indices: 92247557--92247583 Score: 54
Period size: 10 Copynumber: 2.7 Consensus size: 10
92247547 GTCTAATTAC
92247557 CATTTAAGGA
1 CATTTAAGGA
92247567 CATTTAAGGA
1 CATTTAAGGA
92247577 CATTTAA
1 CATTTAA
92247584 TTTACCATTT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 17 1.00
ACGTcount: A:0.41, C:0.11, G:0.15, T:0.33
Consensus pattern (10 bp):
CATTTAAGGA
Found at i:92249210 original size:15 final size:16
Alignment explanation
Indices: 92249185--92249218 Score: 52
Period size: 15 Copynumber: 2.2 Consensus size: 16
92249175 AACAGAGAAG
*
92249185 CCAAGAATAAATAAAT
1 CCAAGAATAAAGAAAT
92249201 CCAA-AATAAAGAAAT
1 CCAAGAATAAAGAAAT
92249216 CCA
1 CCA
92249219 TGATACCAGA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 13 0.76
16 4 0.24
ACGTcount: A:0.62, C:0.18, G:0.06, T:0.15
Consensus pattern (16 bp):
CCAAGAATAAAGAAAT
Found at i:92266069 original size:41 final size:40
Alignment explanation
Indices: 92265958--92266086 Score: 179
Period size: 40 Copynumber: 3.2 Consensus size: 40
92265948 CGGGTTTTAA
* * *
92265958 CCGGATATGGTCACTAGCATAAATGCCTTCGGGACTTAGC
1 CCGGATATAGTCGCTAGCACAAATGCCTTCGGGACTTAGC
*
92265998 CCGGATATAGTCGCTAGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATATAGTCGCTAGCACAAATGCCTTCGGGA-CTTAGC
* *
92266038 CCGGATGTAGTCGCTTAGCACAAAAGCCTTCGGGACTTAGC
1 CCGGATATAGTCGC-TAGCACAAATGCCTTCGGGACTTAGC
92266079 CCGGATAT
1 CCGGATAT
92266087 CATTCGAGTA
Statistics
Matches: 78, Mismatches: 8, Indels: 5
0.86 0.09 0.05
Matches are distributed among these distances:
39 3 0.04
40 45 0.58
41 27 0.35
42 3 0.04
ACGTcount: A:0.25, C:0.26, G:0.25, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTCGCTAGCACAAATGCCTTCGGGACTTAGC
Found at i:92267314 original size:38 final size:38
Alignment explanation
Indices: 92267272--92267347 Score: 143
Period size: 38 Copynumber: 2.0 Consensus size: 38
92267262 CAAGAACTCC
92267272 TTCCTCCTTCCTTAGAATTTTCAGCCAAAAGAAATGAA
1 TTCCTCCTTCCTTAGAATTTTCAGCCAAAAGAAATGAA
*
92267310 TTCCTCCTTCCTTAGAATTTTCGGCCAAAAGAAATGAA
1 TTCCTCCTTCCTTAGAATTTTCAGCCAAAAGAAATGAA
92267348 AAAGGATGAA
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
38 37 1.00
ACGTcount: A:0.33, C:0.24, G:0.12, T:0.32
Consensus pattern (38 bp):
TTCCTCCTTCCTTAGAATTTTCAGCCAAAAGAAATGAA
Found at i:92275604 original size:26 final size:26
Alignment explanation
Indices: 92275570--92275619 Score: 100
Period size: 26 Copynumber: 1.9 Consensus size: 26
92275560 CCACTTAACA
92275570 AAACAAATCACACTATAGATACTTAG
1 AAACAAATCACACTATAGATACTTAG
92275596 AAACAAATCACACTATAGATACTT
1 AAACAAATCACACTATAGATACTT
92275620 GGACTTCTCA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.50, C:0.20, G:0.06, T:0.24
Consensus pattern (26 bp):
AAACAAATCACACTATAGATACTTAG
Found at i:92277807 original size:13 final size:14
Alignment explanation
Indices: 92277778--92277804 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
92277768 TTATATTATA
92277778 AATCATAAAAAATT
1 AATCATAAAAAATT
92277792 AATCATAAAAAAT
1 AATCATAAAAAAT
92277805 AATTTTTATA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.67, C:0.07, G:0.00, T:0.26
Consensus pattern (14 bp):
AATCATAAAAAATT
Found at i:92278071 original size:13 final size:13
Alignment explanation
Indices: 92278053--92278080 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
92278043 TTTATAAAGG
92278053 TTATGGCCAAAAA
1 TTATGGCCAAAAA
92278066 TTATGGCCAAAAA
1 TTATGGCCAAAAA
92278079 TT
1 TT
92278081 TTATTATTTA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.43, C:0.14, G:0.14, T:0.29
Consensus pattern (13 bp):
TTATGGCCAAAAA
Found at i:92279154 original size:33 final size:34
Alignment explanation
Indices: 92279085--92279155 Score: 92
Period size: 33 Copynumber: 2.1 Consensus size: 34
92279075 ACAGCGCATG
*
92279085 CAGTAGCAGTCTGGGCCAGAGCCCTATTCAGTAA
1 CAGTAGCAGTCTGGGCCAGAGCCCTATTCAGAAA
**
92279119 CAGTA-CAGTCTGGGCCTTAGCCCTATAT-AGAAA
1 CAGTAGCAGTCTGGGCCAGAGCCCTAT-TCAGAAA
92279152 CAGT
1 CAGT
92279156 GTGGGCCTAG
Statistics
Matches: 33, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
33 27 0.82
34 6 0.18
ACGTcount: A:0.28, C:0.25, G:0.24, T:0.23
Consensus pattern (34 bp):
CAGTAGCAGTCTGGGCCAGAGCCCTATTCAGAAA
Found at i:92279569 original size:27 final size:27
Alignment explanation
Indices: 92279538--92279730 Score: 215
Period size: 27 Copynumber: 7.1 Consensus size: 27
92279528 GGGCATAATC
* * *
92279538 GTCATATTACCATACAGGGGTGTTACG
1 GTCATTTTACCCTACAGGGGTATTACG
* *
92279565 GTCATTTTACCCTACAGGAGCATTACG
1 GTCATTTTACCCTACAGGGGTATTACG
* * *
92279592 ATCATTTTACCCTATAGGGGTATGACG
1 GTCATTTTACCCTACAGGGGTATTACG
*
92279619 GTCATTTTACCCTACAGGGGTATTACA
1 GTCATTTTACCCTACAGGGGTATTACG
* * * *
92279646 GTCATTTTAACCTATAGAGGTATTATG
1 GTCATTTTACCCTACAGGGGTATTACG
* * * *
92279673 GTCATTTTACGCTACAGGGTTACTAAG
1 GTCATTTTACCCTACAGGGGTATTACG
* *
92279700 GTCAATTTACCCTATAGGGGTATTACG
1 GTCATTTTACCCTACAGGGGTATTACG
92279727 GTCA
1 GTCA
92279731 GATAATGACC
Statistics
Matches: 134, Mismatches: 32, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
27 134 1.00
ACGTcount: A:0.26, C:0.19, G:0.21, T:0.33
Consensus pattern (27 bp):
GTCATTTTACCCTACAGGGGTATTACG
Found at i:92283240 original size:28 final size:27
Alignment explanation
Indices: 92283174--92283242 Score: 68
Period size: 27 Copynumber: 2.5 Consensus size: 27
92283164 ACTACCATCT
* *
92283174 CTTTCAAAAAACTAATGTTTAGAAAAA
1 CTTTCAAAAACCCAATGTTTAGAAAAA
** *
92283201 CTTTTGAGAACCCAAT-TTTGAGAACAAA
1 CTTTCAAAAACCCAATGTTT-AGAA-AAA
92283229 CTTTCAAAAACCCA
1 CTTTCAAAAACCCA
92283243 TTCCACAGCT
Statistics
Matches: 32, Mismatches: 8, Indels: 3
0.74 0.19 0.07
Matches are distributed among these distances:
26 3 0.09
27 15 0.47
28 14 0.44
ACGTcount: A:0.45, C:0.19, G:0.09, T:0.28
Consensus pattern (27 bp):
CTTTCAAAAACCCAATGTTTAGAAAAA
Found at i:92284360 original size:27 final size:27
Alignment explanation
Indices: 92284273--92284432 Score: 180
Period size: 27 Copynumber: 6.0 Consensus size: 27
92284263 GGACATAATC
* *
92284273 GTCATATTACCATACA-GGGTATTACG
1 GTCATTTTACCCTACAGGGGTATTACG
* **
92284299 GTCATTTTACCCTACAAGGCCATTACG
1 GTCATTTTACCCTACAGGGGTATTACG
* ** *
92284326 ATTTTTTTACCCTACAGGGGTATGACG
1 GTCATTTTACCCTACAGGGGTATTACG
*
92284353 GTCATTTTACCCTATAGGGGTATTACG
1 GTCATTTTACCCTACAGGGGTATTACG
* * * *
92284380 ATCATTTTAGCATATA-GGGTATTACG
1 GTCATTTTACCCTACAGGGGTATTACG
92284406 GTCATTTTACCCTACAGGGGTATTACG
1 GTCATTTTACCCTACAGGGGTATTACG
92284433 TCAGATAATG
Statistics
Matches: 109, Mismatches: 23, Indels: 3
0.81 0.17 0.02
Matches are distributed among these distances:
26 36 0.33
27 73 0.67
ACGTcount: A:0.26, C:0.20, G:0.20, T:0.34
Consensus pattern (27 bp):
GTCATTTTACCCTACAGGGGTATTACG
Found at i:92284425 original size:53 final size:53
Alignment explanation
Indices: 92284274--92284432 Score: 210
Period size: 53 Copynumber: 3.0 Consensus size: 53
92284264 GACATAATCG
* * **
92284274 TCATATTACCATACAGGGTATTACGGTCATTTTACCCTACAAGGCCATTACGA
1 TCATTTTACCATACAGGGTATTACGGTCATTTTACCCTACAGGGGTATTACGA
** * * *
92284327 TTTTTTTACCCTACAGGGGTATGACGGTCATTTTACCCTATAGGGGTATTACGA
1 TCATTTTACCATACA-GGGTATTACGGTCATTTTACCCTACAGGGGTATTACGA
* *
92284381 TCATTTTAGCATATAGGGTATTACGGTCATTTTACCCTACAGGGGTATTACG
1 TCATTTTACCATACAGGGTATTACGGTCATTTTACCCTACAGGGGTATTACG
92284433 TCAGATAATG
Statistics
Matches: 89, Mismatches: 16, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
53 46 0.52
54 43 0.48
ACGTcount: A:0.26, C:0.20, G:0.19, T:0.35
Consensus pattern (53 bp):
TCATTTTACCATACAGGGTATTACGGTCATTTTACCCTACAGGGGTATTACGA
Found at i:92290024 original size:28 final size:29
Alignment explanation
Indices: 92289992--92290106 Score: 137
Period size: 29 Copynumber: 4.0 Consensus size: 29
92289982 TACCCGTATC
* *
92289992 TGGCCCATTAAGCCC-AATCATATTCATA
1 TGGCCCATTAGGCCCAAATCACATTCATA
*
92290020 TGGCCCATTAGGCCCAAATCAC-TTGTATA
1 TGGCCCATTAGGCCCAAATCACATT-CATA
*
92290049 TGGCCCATTAGGCCCAAATCACATTTATA
1 TGGCCCATTAGGCCCAAATCACATTCATA
* * *
92290078 TGGCCCGTTAGG-CCTAGTCACATTCATA
1 TGGCCCATTAGGCCCAAATCACATTCATA
92290106 T
1 T
92290107 TCATGCACAC
Statistics
Matches: 77, Mismatches: 7, Indels: 6
0.86 0.08 0.07
Matches are distributed among these distances:
28 30 0.39
29 45 0.58
30 2 0.03
ACGTcount: A:0.28, C:0.28, G:0.16, T:0.29
Consensus pattern (29 bp):
TGGCCCATTAGGCCCAAATCACATTCATA
Found at i:92290313 original size:24 final size:24
Alignment explanation
Indices: 92290285--92290330 Score: 65
Period size: 24 Copynumber: 1.9 Consensus size: 24
92290275 CCAACTTTTG
*
92290285 ACTTTTCAGCATTTTGGCTTTTCA
1 ACTTTTCAGCATTTCGGCTTTTCA
* *
92290309 ACTTTTCGGCGTTTCGGCTTTT
1 ACTTTTCAGCATTTCGGCTTTT
92290331 GCCGATTTAT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 19 1.00
ACGTcount: A:0.11, C:0.22, G:0.17, T:0.50
Consensus pattern (24 bp):
ACTTTTCAGCATTTCGGCTTTTCA
Found at i:92291912 original size:24 final size:24
Alignment explanation
Indices: 92291885--92291954 Score: 62
Period size: 24 Copynumber: 3.2 Consensus size: 24
92291875 CATACACAAC
92291885 ATAACTTAAATTATCTCATTCTCA
1 ATAACTTAAATTATCTCATTCTCA
* * * *
92291909 ATAA-TCAAAATA-CACA---AC-
1 ATAACTTAAATTATCTCATTCTCA
92291927 ATAACTTAAATTATCTCATTCTCA
1 ATAACTTAAATTATCTCATTCTCA
92291951 ATAA
1 ATAA
92291955 TCATTGTAGC
Statistics
Matches: 32, Mismatches: 8, Indels: 12
0.62 0.15 0.23
Matches are distributed among these distances:
18 4 0.12
19 7 0.22
20 3 0.09
22 3 0.09
23 7 0.22
24 8 0.25
ACGTcount: A:0.46, C:0.20, G:0.00, T:0.34
Consensus pattern (24 bp):
ATAACTTAAATTATCTCATTCTCA
Found at i:92291935 original size:42 final size:42
Alignment explanation
Indices: 92291876--92291957 Score: 164
Period size: 42 Copynumber: 2.0 Consensus size: 42
92291866 TTTCATACAC
92291876 ATACACAACATAACTTAAATTATCTCATTCTCAATAATCAAA
1 ATACACAACATAACTTAAATTATCTCATTCTCAATAATCAAA
92291918 ATACACAACATAACTTAAATTATCTCATTCTCAATAATCA
1 ATACACAACATAACTTAAATTATCTCATTCTCAATAATCA
92291958 TTGTAGCCAT
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
42 40 1.00
ACGTcount: A:0.46, C:0.22, G:0.00, T:0.32
Consensus pattern (42 bp):
ATACACAACATAACTTAAATTATCTCATTCTCAATAATCAAA
Found at i:92299018 original size:50 final size:50
Alignment explanation
Indices: 92298943--92299181 Score: 227
Period size: 50 Copynumber: 4.8 Consensus size: 50
92298933 GACCATGGCG
* * * * *
92298943 ATATGAGAGCCAGTGTAAGACCATGTCTATGACAGGGCATCGGCACCGGT
1 ATATGCGAGCTAGTGTAAGACCATGTCTAGGACATGGCATCGGCACCGAT
* * * *
92298993 ATATGCGAGCCAGTGTAAGACCATGTCTGGGACGTGGCATCGGCACCAAT
1 ATATGCGAGCTAGTGTAAGACCATGTCTAGGACATGGCATCGGCACCGAT
* * * * * **
92299043 ATGTGCAAGCTAATGTAAGACCAT-T-TTGGACCATGGCATCAGCATTG-T
1 ATATGCGAGCTAGTGTAAGACCATGTCTAGGA-CATGGCATCGGCACCGAT
*
92299091 -TATGTC-AGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCACCGAT
1 ATATG-CGAGCTAGTGTAAGACCATGTCTAGGACATGGCATCGGCACCGAT
** * * *
92299140 ATATAAGAGCTGGTGTAAGACCATATCCAGGACATGGCATCG
1 ATATGCGAGCTAGTGTAAGACCATGTCTAGGACATGGCATCG
92299182 ACATTTTATC
Statistics
Matches: 153, Mismatches: 29, Indels: 14
0.78 0.15 0.07
Matches are distributed among these distances:
47 19 0.12
48 20 0.13
49 17 0.11
50 97 0.63
ACGTcount: A:0.28, C:0.21, G:0.28, T:0.23
Consensus pattern (50 bp):
ATATGCGAGCTAGTGTAAGACCATGTCTAGGACATGGCATCGGCACCGAT
Found at i:92303415 original size:50 final size:51
Alignment explanation
Indices: 92303284--92303578 Score: 265
Period size: 50 Copynumber: 5.8 Consensus size: 51
92303274 CTTGTAACCG
* * * * * * *
92303284 AAGCTATCTGGTACGCATAATAGCCTACACTTAGTACTACACATGCGACC-
1 AAGCCATCTGATACACATAGTAGCCTGCACTTAGTACTACACACGTGACCT
* * * * *
92303334 AA-CAATCCGGTCCACATAGTAGCCTGCACTTAGTACTACACACATGACCT
1 AAGCCATCTGATACACATAGTAGCCTGCACTTAGTACTACACACGTGACCT
** * * *
92303384 AA-CCATCTGATATTCGTAGTAGCCTGCACTTAGTACTACACACGTGATCG
1 AAGCCATCTGATACACATAGTAGCCTGCACTTAGTACTACACACGTGACCT
*** * * * * *
92303434 AAGTTGTCGGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCT
1 AAGCCATCTGATACACATAGTAGCCTGCACTTAGTACTACACACGTGACCT
* * * *
92303485 AA-CTATCTGTTACACGTAGTAGCCTACACTTAGTACTACACACGTGACCT
1 AAGCCATCTGATACACATAGTAGCCTGCACTTAGTACTACACACGTGACCT
* * *
92303535 AAAGCCATCTTAAACACATAGTAGCCTGCACATAGTACTACACA
1 -AAGCCATCTGATACACATAGTAGCCTGCACTTAGTACTACACA
92303579 TGTGTTCTCA
Statistics
Matches: 194, Mismatches: 47, Indels: 6
0.79 0.19 0.02
Matches are distributed among these distances:
49 38 0.20
50 83 0.43
51 40 0.21
52 33 0.17
ACGTcount: A:0.31, C:0.28, G:0.16, T:0.25
Consensus pattern (51 bp):
AAGCCATCTGATACACATAGTAGCCTGCACTTAGTACTACACACGTGACCT
Found at i:92303475 original size:101 final size:101
Alignment explanation
Indices: 92303348--92303531 Score: 296
Period size: 101 Copynumber: 1.8 Consensus size: 101
92303338 ATCCGGTCCA
* ** *
92303348 CATAGTAGCCTGCACTTAGTACTACACACATGACCTAACCATCTGATATTCGTAGTAGCCTGCAC
1 CATAGTAGCCTGCACTTAGTACTACACACACGACCTAACCATCTGATACACGTAGTAGCCTACAC
92303413 TTAGTACTACACACGTGATCGAAGTTGTCGGGTACG
66 TTAGTACTACACACGTGATCGAAGTTGTCGGGTACG
** * *
92303449 CATAGTAGCCTGCACTTAGTACTACACATGCGACCTAACTATCTGTTACACGTAGTAGCCTACAC
1 CATAGTAGCCTGCACTTAGTACTACACACACGACCTAACCATCTGATACACGTAGTAGCCTACAC
92303514 TTAGTACTACACACGTGA
66 TTAGTACTACACACGTGA
92303532 CCTAAAGCCA
Statistics
Matches: 75, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
101 75 1.00
ACGTcount: A:0.29, C:0.27, G:0.18, T:0.27
Consensus pattern (101 bp):
CATAGTAGCCTGCACTTAGTACTACACACACGACCTAACCATCTGATACACGTAGTAGCCTACAC
TTAGTACTACACACGTGATCGAAGTTGTCGGGTACG
Found at i:92310829 original size:46 final size:45
Alignment explanation
Indices: 92310779--92310951 Score: 181
Period size: 46 Copynumber: 3.8 Consensus size: 45
92310769 TGGTTGAGCA
92310779 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTAT-GATGCGAATG
* * * *
92310825 TCCGAACTCGTTGAGTTGAGTCCGAGTT-AGTGA-AATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGATGCGAA-T--G
*
92310870 CATCCGAACTCGTTGAGTTGAGTCCCAGTTCACTTATAGATGCGAATG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTAT-GATGCGAATG
* * * *
92310918 CCCGAGCTCATTGAGTTGAGTTCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
92310952 GGGGAGGGTT
Statistics
Matches: 104, Mismatches: 14, Indels: 18
0.76 0.10 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
45 4 0.04
46 57 0.55
47 27 0.26
48 4 0.04
50 4 0.04
51 2 0.02
ACGTcount: A:0.24, C:0.20, G:0.26, T:0.30
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGATGCGAATG
Found at i:92310935 original size:93 final size:93
Alignment explanation
Indices: 92310776--92310945 Score: 286
Period size: 93 Copynumber: 1.8 Consensus size: 93
92310766 GGATGGTTGA
* * * *
92310776 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCCAGTTCACTTATAGATGCGAATGCCCGAACTCATTGAGT
92310841 TGAGTCCGAGTTAGTGAAATGTAACTAG
66 TGAGTCCGAGTTAGTGAAATGTAACTAG
*
92310869 GCATCCGAACTCGTTGAGTTGAGTCCCAGTTCACTTATAGATGCGAATGCCCGAGCTCATTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCCAGTTCACTTATAGATGCGAATGCCCGAACTCATTGAGT
*
92310934 TGAGTTCGAGTT
66 TGAGTCCGAGTT
92310946 CACTTAGGGG
Statistics
Matches: 71, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 71 1.00
ACGTcount: A:0.24, C:0.20, G:0.27, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCCAGTTCACTTATAGATGCGAATGCCCGAACTCATTGAGT
TGAGTCCGAGTTAGTGAAATGTAACTAG
Found at i:92326936 original size:16 final size:16
Alignment explanation
Indices: 92326915--92326955 Score: 50
Period size: 14 Copynumber: 2.7 Consensus size: 16
92326905 GTTTCAGTTA
92326915 GAAGAAAAAGAAAAAG
1 GAAGAAAAAGAAAAAG
*
92326931 GAAG--AAAGAAAATG
1 GAAGAAAAAGAAAAAG
*
92326945 GAGGAAAAAGA
1 GAAGAAAAAGA
92326956 GAGGAAGAAG
Statistics
Matches: 21, Mismatches: 2, Indels: 4
0.78 0.07 0.15
Matches are distributed among these distances:
14 12 0.57
16 9 0.43
ACGTcount: A:0.68, C:0.00, G:0.29, T:0.02
Consensus pattern (16 bp):
GAAGAAAAAGAAAAAG
Found at i:92328416 original size:22 final size:19
Alignment explanation
Indices: 92328383--92328429 Score: 58
Period size: 22 Copynumber: 2.3 Consensus size: 19
92328373 AAGGATGATA
92328383 ATTATTAATATATAATTATATCT
1 ATTA-TAATATAT-ATTA-AT-T
92328406 ATTATAATATATATTAATT
1 ATTATAATATATATTAATT
92328425 ATTAT
1 ATTAT
92328430 CAACTTTATA
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
19 6 0.25
20 2 0.08
21 4 0.17
22 8 0.33
23 4 0.17
ACGTcount: A:0.45, C:0.02, G:0.00, T:0.53
Consensus pattern (19 bp):
ATTATAATATATATTAATT
Found at i:92328425 original size:16 final size:15
Alignment explanation
Indices: 92328385--92328426 Score: 50
Period size: 16 Copynumber: 2.7 Consensus size: 15
92328375 GGATGATAAT
92328385 TATTAATATATAATTA
1 TATTAAT-TATAATTA
92328401 TATCT-ATTATAATATA
1 TAT-TAATTATAAT-TA
92328417 TATTAATTAT
1 TATTAATTAT
92328427 TATCAACTTT
Statistics
Matches: 23, Mismatches: 0, Indels: 6
0.79 0.00 0.21
Matches are distributed among these distances:
15 7 0.30
16 15 0.65
17 1 0.04
ACGTcount: A:0.45, C:0.02, G:0.00, T:0.52
Consensus pattern (15 bp):
TATTAATTATAATTA
Found at i:92330353 original size:19 final size:20
Alignment explanation
Indices: 92330329--92330367 Score: 55
Period size: 19 Copynumber: 2.0 Consensus size: 20
92330319 TTTAGCATGG
92330329 TAAACAT-ATATCA-CATCTT
1 TAAACATCAT-TCATCATCTT
92330348 TAAACATCATTCATCATCTT
1 TAAACATCATTCATCATCTT
92330368 ACCACCTTAT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
19 10 0.56
20 8 0.44
ACGTcount: A:0.38, C:0.23, G:0.00, T:0.38
Consensus pattern (20 bp):
TAAACATCATTCATCATCTT
Found at i:92330649 original size:46 final size:45
Alignment explanation
Indices: 92330582--92330753 Score: 170
Period size: 46 Copynumber: 3.7 Consensus size: 45
92330572 AAATCATGTC
* *
92330582 TAAATGAACTCAGACTCAACTCAACGAGCTCGGGCGTTCGCATCCA
1 TAAATGAACTCGGACTCAACTCAACGAGTTCGGGCGTT-GCATCCA
*
92330628 TAAATGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT-C-
1 TAAATGAACTCGGACTCAACTCAACGAGTTCGG--G-C--GTTGCATCCA
* * * * *
92330676 T-CACGAACTCGGACTCAACTCAACGAGTTCAGACATTTGCATCCA
1 TAAATGAACTCGGACTCAACTCAACGAGTTCGGGC-GTTGCATCCA
* *
92330721 TAAGTGAACTCGGACTCAACTCAATGAGTTCGG
1 TAAATGAACTCGGACTCAACTCAACGAGTTCGG
92330754 ATGCTCAACC
Statistics
Matches: 104, Mismatches: 14, Indels: 16
0.78 0.10 0.12
Matches are distributed among these distances:
43 6 0.06
44 2 0.02
45 1 0.01
46 57 0.55
47 28 0.27
48 2 0.02
49 2 0.02
50 3 0.03
51 3 0.03
ACGTcount: A:0.31, C:0.27, G:0.19, T:0.23
Consensus pattern (45 bp):
TAAATGAACTCGGACTCAACTCAACGAGTTCGGGCGTTGCATCCA
Found at i:92330750 original size:93 final size:93
Alignment explanation
Indices: 92330587--92330757 Score: 270
Period size: 93 Copynumber: 1.8 Consensus size: 93
92330577 ATGTCTAAAT
* * *
92330587 GAACTCAGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAATGAACTCGGACTCAACTCAA
1 GAACTCAGACTCAACTCAACGAGCTCAGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
92330652 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
* * * *
92330680 GAACTCGGACTCAACTCAACGAGTTCAGACATTTGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCAGACTCAACTCAACGAGCTCAGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
*
92330745 TGAGTTCGGATGC
66 CGAGTTCGGATGC
92330758 TCAACCATCC
Statistics
Matches: 70, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
93 70 1.00
ACGTcount: A:0.30, C:0.28, G:0.20, T:0.22
Consensus pattern (93 bp):
GAACTCAGACTCAACTCAACGAGCTCAGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:92333354 original size:45 final size:47
Alignment explanation
Indices: 92333286--92333526 Score: 343
Period size: 45 Copynumber: 5.2 Consensus size: 47
92333276 TACAAGATAA
* *
92333286 ATATATATGTGTGGTAAAGCCGAATGGCTATGTG-AA-ATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTATGTGAAATATGTATGAG
92333331 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCT-ATGTGAAATATGTATGAG
**
92333379 ATA--TATATGTGGTAAAGCCGAATGGCTAAATGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTATGTGAAATATGTATGAG
*
92333424 ATATATATATG-GGT-AAGCCGAAT-GCTAATGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCT-ATGTGAAATATGTATGAG
**
92333469 ATATGTATATGTGGTAAAGCCGAATGGCTAAATGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTATGTGAAATATGTATGAG
92333516 TATATGTATAT
1 -ATATGTATAT
92333527 TGATGTGTAT
Statistics
Matches: 177, Mismatches: 9, Indels: 17
0.87 0.04 0.08
Matches are distributed among these distances:
44 3 0.02
45 81 0.46
46 35 0.20
47 33 0.19
48 25 0.14
ACGTcount: A:0.37, C:0.06, G:0.25, T:0.32
Consensus pattern (47 bp):
ATATGTATATGTGGTAAAGCCGAATGGCTATGTGAAATATGTATGAG
Found at i:92333443 original size:91 final size:92
Alignment explanation
Indices: 92333288--92333526 Score: 378
Period size: 92 Copynumber: 2.6 Consensus size: 92
92333278 CAAGATAAAT
* **
92333288 ATATATGTGTGGTAAAGCCGAATGGCTATGTG-AA-ATGTATGAGATATGTATATGTGGTAAAGC
1 ATATATATGTGGTAAAGCCGAATGGCTAAATGAAATATGTATGAGATATGTATATGTGGTAAAGC
92333351 CGAATGGCTAATGTGAAATATGTATGAG
66 CGAAT-GCTAATGTGAAATATGTATGAG
*
92333379 ATATATATGTGGTAAAGCCGAATGGCTAAATGAAATATGTATGAGATATATATATG-GGT-AAGC
1 ATATATATGTGGTAAAGCCGAATGGCTAAATGAAATATGTATGAGATATGTATATGTGGTAAAGC
92333442 CGAATGCTAATGTGAAATATGTATGAG
66 CGAATGCTAATGTGAAATATGTATGAG
92333469 ATATGTATATGTGGTAAAGCCGAATGGCTAAATGAAATATGTATGAGTATATGTATAT
1 ATA--TATATGTGGTAAAGCCGAATGGCTAAATGAAATATGTATGAG-ATATGTATAT
92333527 TGATGTGTAT
Statistics
Matches: 138, Mismatches: 5, Indels: 8
0.91 0.03 0.05
Matches are distributed among these distances:
90 25 0.18
91 38 0.28
92 47 0.34
93 28 0.20
ACGTcount: A:0.37, C:0.06, G:0.26, T:0.31
Consensus pattern (92 bp):
ATATATATGTGGTAAAGCCGAATGGCTAAATGAAATATGTATGAGATATGTATATGTGGTAAAGC
CGAATGCTAATGTGAAATATGTATGAG
Found at i:92333597 original size:46 final size:45
Alignment explanation
Indices: 92333541--92333644 Score: 158
Period size: 46 Copynumber: 2.3 Consensus size: 45
92333531 GTGTATGAGA
92333541 ATGAATGTATATG-GGTAAAG-CGAATATGGCTAATGTGAAATATGT
1 ATGAATGTATATGTGGTAAAGCCG--TATGGCTAATGTGAAATATGT
92333586 ATGATATGTATATGTGGTAAAGCCGTATGGCTAATGTGAAATATGT
1 ATGA-ATGTATATGTGGTAAAGCCGTATGGCTAATGTGAAATATGT
92333632 ATGAGATGTATAT
1 ATGA-ATGTATAT
92333645 ATTGTGGCCG
Statistics
Matches: 55, Mismatches: 1, Indels: 5
0.90 0.02 0.08
Matches are distributed among these distances:
45 4 0.07
46 42 0.76
47 7 0.13
48 2 0.04
ACGTcount: A:0.36, C:0.05, G:0.26, T:0.34
Consensus pattern (45 bp):
ATGAATGTATATGTGGTAAAGCCGTATGGCTAATGTGAAATATGT
Found at i:92333836 original size:34 final size:36
Alignment explanation
Indices: 92333776--92333842 Score: 111
Period size: 34 Copynumber: 1.9 Consensus size: 36
92333766 GGAAATATAT
92333776 TCCGGGTAAGACCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCGATGACTACGTGTGGAGATTTTG
*
92333812 TCCGGGTAAGA-CGAT-ACTACGTGTGGGGATT
1 TCCGGGTAAGACCGATGACTACGTGTGGAGATT
92333843 ATTCGAGCTA
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
34 15 0.50
35 4 0.13
36 11 0.37
ACGTcount: A:0.22, C:0.16, G:0.34, T:0.27
Consensus pattern (36 bp):
TCCGGGTAAGACCGATGACTACGTGTGGAGATTTTG
Found at i:92335651 original size:43 final size:43
Alignment explanation
Indices: 92335532--92335878 Score: 597
Period size: 43 Copynumber: 8.1 Consensus size: 43
92335522 TGAAACTCGA
* *
92335532 TGATATATATTTGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGG
1 TGATATGTATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGG
92335575 TGATATGTATTC-GGCCTTCGTGCCTAGCAGGCTTCGTGCCGG
1 TGATATGTATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGG
*
92335617 TGATATGTATTCGGGTCTTCGTGCCTAGCAGGCTTCGTGCCGG
1 TGATATGTATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGG
* *
92335660 TTATATGTATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCAG
1 TGATATGTATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGG
92335703 TGATATGTATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGG
1 TGATATGTATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGG
*
92335746 TGATATATATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGG
1 TGATATGTATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGG
*
92335789 TGATATGTATCCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGG
1 TGATATGTATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGG
* **
92335832 TGATATGTATTCGGGTCTTCGTGCCTAGCAGGCTTAATGCCGG
1 TGATATGTATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGG
92335875 TGAT
1 TGAT
92335879 TCGAGCAAGG
Statistics
Matches: 288, Mismatches: 15, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
42 42 0.15
43 246 0.85
ACGTcount: A:0.13, C:0.24, G:0.31, T:0.31
Consensus pattern (43 bp):
TGATATGTATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGG
Found at i:92336041 original size:29 final size:29
Alignment explanation
Indices: 92336009--92336143 Score: 80
Period size: 29 Copynumber: 4.7 Consensus size: 29
92335999 AATGAATATG
*
92336009 GGCATTATGTGTGCGAGATCAGTAATTGA
1 GGCACTATGTGTGCGAGATCAGTAATTGA
* * ** **
92336038 GGCACTGTGTGTGC-AAATTCCTTTAACCGA
1 GGCACTATGTGTGCGAGA-T-CAGTAATTGA
* **
92336068 -GCATTATGTGTGCGAGATTGGTAATTGA
1 GGCACTATGTGTGCGAGATCAGTAATTGA
* * * **
92336096 GGCACTGTGTGTGCGAGTTC-TTCAACCGA
1 GGCACTATGTGTGCGAGATCAGT-AATTGA
92336125 -GCACTATGTGTGCGAGATC
1 GGCACTATGTGTGCGAGATC
92336144 GGTCAGTGGG
Statistics
Matches: 77, Mismatches: 24, Indels: 11
0.69 0.21 0.10
Matches are distributed among these distances:
28 25 0.32
29 44 0.57
30 8 0.10
ACGTcount: A:0.23, C:0.17, G:0.30, T:0.30
Consensus pattern (29 bp):
GGCACTATGTGTGCGAGATCAGTAATTGA
Found at i:92336135 original size:28 final size:27
Alignment explanation
Indices: 92336060--92336140 Score: 81
Period size: 28 Copynumber: 2.9 Consensus size: 27
92336050 GCAAATTCCT
* *
92336060 TTAACCGAGCATTATGTGTGCGAGATTG
1 TTAACCGAGCACTATGTGTGCGAG-TTC
* ** *
92336088 GTAATTGAGGCACTGTGTGTGCGAGTTC
1 TTAACCGA-GCACTATGTGTGCGAGTTC
92336116 TTCAACCGAGCACTATGTGTGCGAG
1 TT-AACCGAGCACTATGTGTGCGAG
92336141 ATCGGTCAGT
Statistics
Matches: 41, Mismatches: 10, Indels: 4
0.75 0.18 0.07
Matches are distributed among these distances:
28 23 0.56
29 18 0.44
ACGTcount: A:0.22, C:0.17, G:0.31, T:0.30
Consensus pattern (27 bp):
TTAACCGAGCACTATGTGTGCGAGTTC
Found at i:92336156 original size:28 final size:28
Alignment explanation
Indices: 92336072--92336164 Score: 71
Period size: 28 Copynumber: 3.3 Consensus size: 28
92336062 AACCGAGCAT
* * *
92336072 TATGTGTGCGAGATTGGTAATTGAGGCAC
1 TATGTGTGCGAGATCGGTCACTG-GGCAC
* * * * *
92336101 TGTGTGTGCGAGTTC-TTCAACCGAGCAC
1 TATGTGTGCGAGATCGGTC-ACTGGGCAC
*
92336129 TATGTGTGCGAGATCGGTCAGTGGGCAC
1 TATGTGTGCGAGATCGGTCACTGGGCAC
*
92336157 TAAGTGTG
1 TATGTGTG
92336165 TGAAATGAGA
Statistics
Matches: 47, Mismatches: 15, Indels: 5
0.70 0.22 0.07
Matches are distributed among these distances:
28 31 0.66
29 16 0.34
ACGTcount: A:0.20, C:0.16, G:0.34, T:0.29
Consensus pattern (28 bp):
TATGTGTGCGAGATCGGTCACTGGGCAC
Found at i:92336166 original size:58 final size:58
Alignment explanation
Indices: 92336014--92336146 Score: 205
Period size: 58 Copynumber: 2.3 Consensus size: 58
92336004 ATATGGGCAT
* * *
92336014 TATGTGTGCGAGATCAGTAATTGAGGCACTGTGTGTGCAAATTCCTTTAACCGAGCAT
1 TATGTGTGCGAGATCGGTAATTGAGGCACTGTGTGTGCAAATTCCTTCAACCGAGCAC
* * *
92336072 TATGTGTGCGAGATTGGTAATTGAGGCACTGTGTGTGCGAGTT-CTTCAACCGAGCAC
1 TATGTGTGCGAGATCGGTAATTGAGGCACTGTGTGTGCAAATTCCTTCAACCGAGCAC
92336129 TATGTGTGCGAGATCGGT
1 TATGTGTGCGAGATCGGT
92336147 CAGTGGGCAC
Statistics
Matches: 68, Mismatches: 7, Indels: 1
0.89 0.09 0.01
Matches are distributed among these distances:
57 29 0.43
58 39 0.57
ACGTcount: A:0.23, C:0.17, G:0.30, T:0.31
Consensus pattern (58 bp):
TATGTGTGCGAGATCGGTAATTGAGGCACTGTGTGTGCAAATTCCTTCAACCGAGCAC
Found at i:92339609 original size:48 final size:48
Alignment explanation
Indices: 92339538--92339779 Score: 358
Period size: 48 Copynumber: 5.0 Consensus size: 48
92339528 CAAGATAAAT
* * * *
92339538 ATATATATGTGTGGTAAATCCGAATGGCTAATGTTAAAAATGTATGAG
1 ATATATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
* **
92339586 ATATGTATATGTGGTAAAGCCGAATGGCTAACATGAAATATGTATGAG
1 ATATATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
* **
92339634 ATATATATATGTGGTAAAGCTGAATGGCTAACATGAAATATGTATGAG
1 ATATATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
* *
92339682 ATATATATATGCGGTAAATCCGAATGGCTAATGTGAAATATGTATGAG
1 ATATATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
* *
92339730 ATATGTATATGTGGTAAAGCCGTATGGCTAATGTGAAATATGTATGAG
1 ATATATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
92339778 AT
1 AT
92339780 GTGTATATAT
Statistics
Matches: 176, Mismatches: 18, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
48 176 1.00
ACGTcount: A:0.37, C:0.07, G:0.24, T:0.32
Consensus pattern (48 bp):
ATATATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
Found at i:92349301 original size:40 final size:40
Alignment explanation
Indices: 92349242--92349385 Score: 175
Period size: 40 Copynumber: 3.6 Consensus size: 40
92349232 CTCGCACAAG
* * * * *
92349242 GCCTTCGGGTCTTAACCCGGATATGGTCACTAGCATAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
*
92349282 GCCTTCAGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
* * *
92349322 GCCTTC-GGATCTTAGTCCGGATGTAGTCGCTTAGCACAAAA
1 GCCTTCGGGA-CTTAGCCCGGATATAGTCGC-TAGCACAAAT
92349363 GCCTT-GGGACTTAGCCCGGATAT
1 GCCTTCGGGACTTAGCCCGGATAT
92349386 CATTCGAGTA
Statistics
Matches: 90, Mismatches: 11, Indels: 6
0.84 0.10 0.06
Matches are distributed among these distances:
39 3 0.03
40 70 0.78
41 17 0.19
ACGTcount: A:0.24, C:0.26, G:0.24, T:0.26
Consensus pattern (40 bp):
GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
Found at i:92351562 original size:79 final size:81
Alignment explanation
Indices: 92351448--92351630 Score: 216
Period size: 79 Copynumber: 2.3 Consensus size: 81
92351438 TACTCGTTCA
* *
92351448 AATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCG-ACAAAATGCCTTCGGGA-CTTAAACCG
1 AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCAC-AAATGCCTTC-GGATCTTAAACCG
* *
92351510 GATTTAGTAAC-TCGCACC
64 GATATAGTAACTTAGCA-C
**
92351528 AATGCCTTCGGG-CTTAGCCCGGAAT-TAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGGA
1 AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAAACCGGA
* *
92351591 TATGGTCACTTAGCAC
66 TATAGTAACTTAGCAC
*
92351607 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAGCCCGGA
92351631 CATCATTCGA
Statistics
Matches: 89, Mismatches: 9, Indels: 10
0.82 0.08 0.09
Matches are distributed among these distances:
78 3 0.03
79 56 0.63
80 30 0.34
ACGTcount: A:0.26, C:0.27, G:0.23, T:0.24
Consensus pattern (81 bp):
AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAAACCGGA
TATAGTAACTTAGCAC
Found at i:92351630 original size:40 final size:40
Alignment explanation
Indices: 92351427--92351630 Score: 213
Period size: 40 Copynumber: 5.1 Consensus size: 40
92351417 CGGAATTTAA
** *
92351427 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* **
92351467 CCGGTTATAGTAACTCG-ACAAAATGCCTTCGGGACTTAAA
1 CCGGATATAGTAACTCGCAC-AAATGCCTTCGGGACTTAGC
* *
92351507 CCGGATTTAGTAACTCGCACCAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
92351546 CCGGA-ATTAGTAACTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
92351586 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
92351626 CCGGA
1 CCGGA
92351631 CATCATTCGA
Statistics
Matches: 138, Mismatches: 17, Indels: 18
0.80 0.10 0.10
Matches are distributed among these distances:
38 2 0.01
39 33 0.24
40 89 0.64
41 14 0.10
ACGTcount: A:0.26, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:92353700 original size:1 final size:1
Alignment explanation
Indices: 92353694--92353732 Score: 78
Period size: 1 Copynumber: 39.0 Consensus size: 1
92353684 CTTCTTTTCC
92353694 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
92353733 GAGGTGAATC
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 38 1.00
ACGTcount: A:0.00, C:0.00, G:0.00, T:1.00
Consensus pattern (1 bp):
T
Found at i:92359153 original size:79 final size:79
Alignment explanation
Indices: 92359036--92359259 Score: 294
Period size: 79 Copynumber: 2.8 Consensus size: 79
92359026 GCTACTCGTT
*
92359036 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCG
1 CAAATGCCTTC-GGACTTAGCCCGGATT-TAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCG
*
92359100 G-TTATAGTAACTCGCA
64 GAAT-TAGTAACTCGCA
* *
92359116 CAAATGCCTTCGGACTTAACCCGGATTTAGTAACTCGCACCAATGCCTTCGGG-CTTAGCCCGGA
1 CAAATGCCTTCGGACTTAGCCCGGATTTAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGA
92359180 ATTAGTAACTCGCA
66 ATTAGTAACTCGCA
* * * * *
92359194 CAAATGCCTTCGGATCTTAGTCCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGCCCG
1 CAAATGCCTTCGGA-CTTAGCCCGGATTTAGTAAC-TCGCACAAATGCCTTCGGGACTTAGCCCG
92359258 GA
64 GA
92359260 CATCATTCGA
Statistics
Matches: 128, Mismatches: 11, Indels: 10
0.86 0.07 0.07
Matches are distributed among these distances:
78 36 0.28
79 61 0.48
80 31 0.24
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.24
Consensus pattern (79 bp):
CAAATGCCTTCGGACTTAGCCCGGATTTAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGA
ATTAGTAACTCGCA
Found at i:92359259 original size:40 final size:40
Alignment explanation
Indices: 92359017--92359259 Score: 300
Period size: 40 Copynumber: 6.1 Consensus size: 40
92359007 CGGAATTTAA
** *
92359017 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
*
92359057 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
92359097 CCGGTTATAGTAACTCGCACAAATGCCTTC-GGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
92359136 CCGGATTTAGTAACTCGCACCAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
92359175 CCGGA-ATTAGTAACTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
92359215 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
92359255 CCGGA
1 CCGGA
92359260 CATCATTCGA
Statistics
Matches: 179, Mismatches: 16, Indels: 16
0.85 0.08 0.08
Matches are distributed among these distances:
38 2 0.01
39 68 0.38
40 97 0.54
41 12 0.07
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:92366280 original size:40 final size:40
Alignment explanation
Indices: 92366185--92366409 Score: 224
Period size: 40 Copynumber: 5.6 Consensus size: 40
92366175 TATTCGAATG
* *
92366185 ATATCCGGGCTAAG-TCCCGAAGGCTTTTGTGCTAGGTGACT
1 ATATCCGGGCTAAGAT-CCGAAGGCATTTGTGCTA-GCGACT
* * * * *
92366226 ATAACCGGACTAAGATCCGAAGGCATTCGTGCGAGTTG-CT
1 ATATCCGGGCTAAGATCCGAAGGCATTTGTGCTAG-CGACT
* * * *
92366266 ATATCCGGGTTAAGACCCGAAGCCATTTGTGCTAGCGATT
1 ATATCCGGGCTAAGATCCGAAGGCATTTGTGCTAGCGACT
* *
92366306 ATATCCGGGCTAAAACCCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAGATCCGAAGGCATTTGTGCTAGCGACT
* * *
92366346 ATATCCGGGCTAAG-TCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGAT-CCGAAGGCATTTGTGCTAGCGACT
*
92366386 ACATCCGGGCTAAGA-CGCGAAGGC
1 ATATCCGGGCTAAGATC-CGAAGGC
92366410 CTTGTGCAAG
Statistics
Matches: 154, Mismatches: 24, Indels: 13
0.81 0.13 0.07
Matches are distributed among these distances:
39 2 0.01
40 122 0.79
41 29 0.19
42 1 0.01
ACGTcount: A:0.25, C:0.24, G:0.27, T:0.24
Consensus pattern (40 bp):
ATATCCGGGCTAAGATCCGAAGGCATTTGTGCTAGCGACT
Found at i:92366365 original size:80 final size:80
Alignment explanation
Indices: 92366185--92366445 Score: 276
Period size: 80 Copynumber: 3.3 Consensus size: 80
92366175 TATTCGAATG
* * * *
92366185 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAGGTGACTATAACCGGACTAAGATCCGAAGGC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTA-GTGACTATATCCGGGCTAAGACCCGAAGGC
*
92366250 ATTCGTGCGAGTTGCT
65 ATTCGTGCGAGTCGCT
* * * * * *
92366266 ATATCCGGGTTAAGACCCGAAGCCATTTGTGCTAGCGATTATATCCGGGCTAAAACCCGAAGGCA
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGACCCGAAGGCA
* *
92366331 TTTGTGCTAG-CGACT
66 TTCGTGCGAGTCG-CT
* * * * *
92366346 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACCACATCCGGGCTAAGACGCGAAGGCC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGACCCGAAGGCA
* * *
92366411 TT-GTGCAAGTAGTT
66 TTCGTGCGAGTCGCT
* *
92366425 ATATCC-GGATAAATCCCGAAG
1 ATATCCGGGCTAAGTCCCGAAG
92366446 ATTTCTTGAG
Statistics
Matches: 149, Mismatches: 29, Indels: 7
0.81 0.16 0.04
Matches are distributed among these distances:
78 13 0.09
79 14 0.09
80 92 0.62
81 30 0.20
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.24
Consensus pattern (80 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCGCT
Found at i:92366400 original size:120 final size:121
Alignment explanation
Indices: 92366185--92366407 Score: 290
Period size: 120 Copynumber: 1.9 Consensus size: 121
92366175 TATTCGAATG
** * *
92366185 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAGGTGACTATAACCGGACTAAGATCCGAAGGC
1 ATATCCGGGCTAAAACCCGAAGGCATTTGTGCTAGGCGACTATAACCGGACTAAGATCCGAAGGC
* * * *
92366250 ATTCGTGCGAGTTGCTATATCCGGGTTAAGACCCGAAGCCATTTGTGCTAGCGATT
66 ATTCATGCGAGTTGCCACATCCGGGCTAAGACCCGAAGCCATTTGTGCTAGCGATT
* *
92366306 ATATCCGGGCTAAAACCCGAAGGCATTTGTGCTA-GCGACTATATCCGGGCTAAG-TCCCGAAGG
1 ATATCCGGGCTAAAACCCGAAGGCATTTGTGCTAGGCGACTATAACCGGACTAAGAT-CCGAAGG
* * *
92366369 CATTTATGCTAG-TGACCACATCCGGGCTAAGACGCGAAG
65 CATTCATGCGAGTTG-CCACATCCGGGCTAAGACCCGAAG
92366408 GCCTTGTGCA
Statistics
Matches: 87, Mismatches: 13, Indels: 5
0.83 0.12 0.05
Matches are distributed among these distances:
119 3 0.03
120 53 0.61
121 31 0.36
ACGTcount: A:0.26, C:0.24, G:0.27, T:0.24
Consensus pattern (121 bp):
ATATCCGGGCTAAAACCCGAAGGCATTTGTGCTAGGCGACTATAACCGGACTAAGATCCGAAGGC
ATTCATGCGAGTTGCCACATCCGGGCTAAGACCCGAAGCCATTTGTGCTAGCGATT
Found at i:92368925 original size:47 final size:47
Alignment explanation
Indices: 92368847--92369636 Score: 1303
Period size: 47 Copynumber: 16.7 Consensus size: 47
92368837 CCCTTCGGGA
* * * * * *
92368847 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
92368894 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
92368941 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
92368988 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
92369035 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
92369082 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
92369129 CTTATCACGTATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
92369176 CTTATCACATATATATACACTTTCATATTCATCACATTGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
92369225 CTTATCACATATATACAGTTTCACATTCATCACATCAGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
92369272 CTTATCACATATATACACTTCCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
92369319 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
92369366 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
92369413 CTTA-CACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
92369459 CTTATCACATATATATACACTTTCACATTCATCACATTGGTCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
92369508 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
92369555 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
** *
92369602 CTTATCACATATATGGACATTCACATTCATCACAT
1 CTTATCACATATATACACTTTCACATTCATCACAT
92369637 AAAATACTAA
Statistics
Matches: 696, Mismatches: 42, Indels: 10
0.93 0.06 0.01
Matches are distributed among these distances:
46 45 0.06
47 564 0.81
49 87 0.12
ACGTcount: A:0.29, C:0.29, G:0.09, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Done.