Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A06
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 115140250
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2234201 characters in sequence are not A, C, G, or T
File 271 of 345
Found at i:92392397 original size:18 final size:18
Alignment explanation
Indices: 92392376--92392410 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
92392366 AAGAAACATT
92392376 ATCAGAA-CTAGAATTAGA
1 ATCAGAATC-AGAATTAGA
92392394 ATCAGAATCAGAATTAG
1 ATCAGAATCAGAATTAG
92392411 GTGACAGAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 15 0.94
19 1 0.06
ACGTcount: A:0.49, C:0.11, G:0.17, T:0.23
Consensus pattern (18 bp):
ATCAGAATCAGAATTAGA
Found at i:92392422 original size:25 final size:25
Alignment explanation
Indices: 92392391--92392445 Score: 83
Period size: 25 Copynumber: 2.2 Consensus size: 25
92392381 AACTAGAATT
* *
92392391 AGAATCAGAATCAGAATTAGGTGAC
1 AGAATCAGAATCAGAATCAGGTAAC
*
92392416 AGAATCAGAATCAGTATCAGGTAAC
1 AGAATCAGAATCAGAATCAGGTAAC
92392441 AGAAT
1 AGAAT
92392446 TAAAAACAGA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
25 27 1.00
ACGTcount: A:0.45, C:0.13, G:0.22, T:0.20
Consensus pattern (25 bp):
AGAATCAGAATCAGAATCAGGTAAC
Found at i:92392917 original size:27 final size:27
Alignment explanation
Indices: 92392877--92393154 Score: 387
Period size: 27 Copynumber: 10.3 Consensus size: 27
92392867 TACCTCACAA
*
92392877 GGTATCTCGGTAATTCTACCCTACAGG
1 GGTATTTCGGTAATTCTACCCTACAGG
** *
92392904 GGTATTTCACTAATTCCACCCTACAGG
1 GGTATTTCGGTAATTCTACCCTACAGG
* *
92392931 GGTATTTCGGTATTTCTACCCTACAAG
1 GGTATTTCGGTAATTCTACCCTACAGG
* *
92392958 CGTATTTCGGTAATTCTACCCTATAGG
1 GGTATTTCGGTAATTCTACCCTACAGG
92392985 GGTATTTCGGTAATTCTACCCTACA-G
1 GGTATTTCGGTAATTCTACCCTACAGG
* ** * *
92393011 GGTATTGCAATAATTCTACCCTATAAG
1 GGTATTTCGGTAATTCTACCCTACAGG
92393038 GGTATTTCGGTAATTCTACCCTACAGG
1 GGTATTTCGGTAATTCTACCCTACAGG
* *
92393065 GGTATTTCGATAATTCTACCCTATAGG
1 GGTATTTCGGTAATTCTACCCTACAGG
* *
92393092 GGTATTTCAGTAATTCTACCCTATAGG
1 GGTATTTCGGTAATTCTACCCTACAGG
*
92393119 GGTATTCCGGTAATTCTACCCTACAGG
1 GGTATTTCGGTAATTCTACCCTACAGG
92393146 GGTATTTCG
1 GGTATTTCG
92393155 ATATTATACA
Statistics
Matches: 218, Mismatches: 32, Indels: 2
0.87 0.13 0.01
Matches are distributed among these distances:
26 22 0.10
27 196 0.90
ACGTcount: A:0.24, C:0.22, G:0.19, T:0.34
Consensus pattern (27 bp):
GGTATTTCGGTAATTCTACCCTACAGG
Found at i:92393041 original size:134 final size:135
Alignment explanation
Indices: 92392887--92393151 Score: 415
Period size: 134 Copynumber: 2.0 Consensus size: 135
92392877 GGTATCTCGG
* * *
92392887 TAATTCTACCCTACAGGGGTATTTCACTAATTCCACCCTACAGGGGTATTTCGGTATTTCTACCC
1 TAATTCTACCCTACAAGGGTATTTCACTAATTCCACCCTACAGGGGTATTTCGATAATTCTACCC
* *
92392952 TACAAGCGTATTTCGGTAATTCTACCCTATAGGGGTATTTCGGTAATTCTACCCTACA-GGGTAT
66 TACAAGCGTATTTCAGTAATTCTACCCTATAGGGGTATTCCGGTAATTCTACCCTACAGGGGTAT
92393016 TGCAA
131 TGCAA
* ** *
92393021 TAATTCTACCCTATAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCGATAATTCTACCC
1 TAATTCTACCCTACAAGGGTATTTCACTAATTCCACCCTACAGGGGTATTTCGATAATTCTACCC
* * *
92393086 TATAGGGGTATTTCAGTAATTCTACCCTATAGGGGTATTCCGGTAATTCTACCCTACAGGGGTAT
66 TACAAGCGTATTTCAGTAATTCTACCCTATAGGGGTATTCCGGTAATTCTACCCTACAGGGGTAT
92393151 T
131 T
92393152 TCGATATTAT
Statistics
Matches: 118, Mismatches: 12, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
134 111 0.94
135 7 0.06
ACGTcount: A:0.25, C:0.22, G:0.18, T:0.34
Consensus pattern (135 bp):
TAATTCTACCCTACAAGGGTATTTCACTAATTCCACCCTACAGGGGTATTTCGATAATTCTACCC
TACAAGCGTATTTCAGTAATTCTACCCTATAGGGGTATTCCGGTAATTCTACCCTACAGGGGTAT
TGCAA
Found at i:92393203 original size:27 final size:27
Alignment explanation
Indices: 92393142--92393323 Score: 169
Period size: 27 Copynumber: 6.8 Consensus size: 27
92393132 TTCTACCCTA
* *
92393142 CAGGGGTATTTCGAT-ATTATACAAAT
1 CAGGGGTATTTTGATAATTTTACAAAT
* *
92393168 C-GAGAGTATTTTGATAATTTCACAAAT
1 CAG-GGGTATTTTGATAATTTTACAAAT
* *
92393195 CAGGGGTATTTTGGTAATTTTACAAGT
1 CAGGGGTATTTTGATAATTTTACAAAT
*
92393222 CAGGGGTATTTT-AGTAATTTTACAAAC
1 CAGGGGTATTTTGA-TAATTTTACAAAT
*
92393249 CAGGAGTATTTT-AGTAATTTTACAAA-
1 CAGGGGTATTTTGA-TAATTTTACAAAT
* **
92393275 CTAGGGGTATTTTGGTAATTTTACTGAT
1 C-AGGGGTATTTTGATAATTTTACAAAT
*
92393303 C-GAGGGTATTTTGGTAATTTT
1 CAG-GGGTATTTTGATAATTTT
92393324 GTAAACTAAG
Statistics
Matches: 132, Mismatches: 16, Indels: 15
0.81 0.10 0.09
Matches are distributed among these distances:
25 1 0.01
26 13 0.10
27 116 0.88
28 2 0.02
ACGTcount: A:0.30, C:0.09, G:0.21, T:0.40
Consensus pattern (27 bp):
CAGGGGTATTTTGATAATTTTACAAAT
Found at i:92393227 original size:134 final size:133
Alignment explanation
Indices: 92392925--92393240 Score: 309
Period size: 134 Copynumber: 2.4 Consensus size: 133
92392915 AATTCCACCC
* * * * * * *
92392925 TACAGGGGTATTTCGGTATTTCTACCCTACAAGCGTATTTCGGTAATTCTACCCTATAGGGGTAT
1 TACAGGGGTATTTCGATAATTCTA-CCAATAGGGGTATTTCAGTAATTCTACCCTATAGGGGTAT
* * ** * *
92392990 TTCGGTAATTCTACCCTACAGGGTATTGCAATAATTCTACCCTATAAGGGTATTTCGGTAATTCT
65 TCCGGTAATTCTACCCTACAGGGTATTGCAATAATTATACCAAATAAGAGTATTTCGATAATTCT
**
92393055 ACCC
130 ACAA
*
92393059 TACAGGGGTATTTCGATAATTCTACCCTATAGGGGTATTTCAGTAATTCTACCCTATAGGGGTAT
1 TACAGGGGTATTTCGATAATTCTA-CCAATAGGGGTATTTCAGTAATTCTACCCTATAGGGGTAT
* * * *
92393124 TCCGGTAATTCTACCCTACAGGGGTATTTCGAT-ATTATA-CAAATCGAGAGTATTTTGATAATT
65 TCCGGTAATTCTACCCTACA-GGGTATTGCAATAATTATACCAAAT-AAGAGTATTTCGATAATT
92393187 -TCACAA
128 CT-ACAA
* * * *
92393193 -ATCAGGGGTATTTTGGTAATTTTA-CAAGTCAGGGGTATTTTAGTAATT
1 TA-CAGGGGTATTTCGATAATTCTACCAA-T-AGGGGTATTTCAGTAATT
92393241 TTACAAACCA
Statistics
Matches: 153, Mismatches: 23, Indels: 12
0.81 0.12 0.06
Matches are distributed among these distances:
132 2 0.01
133 6 0.04
134 135 0.88
135 10 0.07
ACGTcount: A:0.27, C:0.17, G:0.20, T:0.36
Consensus pattern (133 bp):
TACAGGGGTATTTCGATAATTCTACCAATAGGGGTATTTCAGTAATTCTACCCTATAGGGGTATT
CCGGTAATTCTACCCTACAGGGTATTGCAATAATTATACCAAATAAGAGTATTTCGATAATTCTA
CAA
Found at i:92393240 original size:54 final size:53
Alignment explanation
Indices: 92393173--92393340 Score: 187
Period size: 54 Copynumber: 3.1 Consensus size: 53
92393163 CAAATCGAGA
* *
92393173 GTATTTTGATAATTTCACAAATCAGGGGTATTTTGGTAATTTTAC-AAGTCAGGG
1 GTATTTTG-TAATTTTACAAATCAGGGGTATTTTGGTAATTTTACAAACT-AGGG
* * *
92393227 GTATTTTAGTAATTTTACAAACCAGGAGTATTTTAGTAATTTTACAAACTAGGG
1 GTATTTT-GTAATTTTACAAATCAGGGGTATTTTGGTAATTTTACAAACTAGGG
** ** *
92393281 GTATTTTGGTAATTTTACTGATC-GAGGGTATTTTGGTAATTTTGTAAACTAAGG
1 GTATTTT-GTAATTTTACAAATCAG-GGGTATTTTGGTAATTTTACAAACTAGGG
92393335 GTATTT
1 GTATTT
92393341 CAATAATTTT
Statistics
Matches: 97, Mismatches: 14, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
53 1 0.01
54 92 0.95
55 4 0.04
ACGTcount: A:0.30, C:0.08, G:0.21, T:0.42
Consensus pattern (53 bp):
GTATTTTGTAATTTTACAAATCAGGGGTATTTTGGTAATTTTACAAACTAGGG
Found at i:92393281 original size:81 final size:81
Alignment explanation
Indices: 92393171--92393323 Score: 215
Period size: 81 Copynumber: 1.9 Consensus size: 81
92393161 TACAAATCGA
92393171 GAGTATTTTGATAATTTCACAAATCAGGGGTATTTTGGTAATTTTACA-AGTC-AGGGGTATTTT
1 GAGTATTTTGATAATTTCACAAATCAGGGGTATTTTGGTAATTTTACAGA-TCGA-GGGTATTTT
92393234 AGTAATTTTACAAACCAG
64 AGTAATTTTACAAACCAG
* *
92393252 GAGTATTTT-AGTAATTTTACAAA-CTAGGGGTATTTTGGTAATTTTACTGATCGAGGGTATTTT
1 GAGTATTTTGA-TAATTTCACAAATC-AGGGGTATTTTGGTAATTTTACAGATCGAGGGTATTTT
*
92393315 GGTAATTTT
64 AGTAATTTT
92393324 GTAAACTAAG
Statistics
Matches: 65, Mismatches: 3, Indels: 8
0.86 0.04 0.11
Matches are distributed among these distances:
80 2 0.03
81 61 0.94
82 2 0.03
ACGTcount: A:0.29, C:0.08, G:0.21, T:0.42
Consensus pattern (81 bp):
GAGTATTTTGATAATTTCACAAATCAGGGGTATTTTGGTAATTTTACAGATCGAGGGTATTTTAG
TAATTTTACAAACCAG
Found at i:92393335 original size:27 final size:27
Alignment explanation
Indices: 92393198--92393355 Score: 115
Period size: 27 Copynumber: 5.9 Consensus size: 27
92393188 CACAAATCAG
* * * *
92393198 GGGTATTTTGGTAATTTTA-CAAGTCAG
1 GGGTATTTTAGTAATTTTATAAACT-AA
* *
92393225 GGGTATTTTAGTAATTTTACAAAC-CA
1 GGGTATTTTAGTAATTTTATAAACTAA
* *
92393251 GGAGTATTTTAGTAATTTTACAAACTAG
1 GG-GTATTTTAGTAATTTTATAAACTAA
* * * *
92393279 GGGTATTTTGGTAATTTTACTGATC-GA
1 GGGTATTTTAGTAATTTTA-TAAACTAA
* *
92393306 GGGTATTTTGGTAATTTTGTAAACTAA
1 GGGTATTTTAGTAATTTTATAAACTAA
* * *
92393333 GGGTATTTCAATAATTTTGTAAA
1 GGGTATTTTAGTAATTTTATAAA
92393356 TCGAGGATAA
Statistics
Matches: 106, Mismatches: 20, Indels: 10
0.78 0.15 0.07
Matches are distributed among these distances:
26 5 0.05
27 95 0.90
28 6 0.06
ACGTcount: A:0.30, C:0.07, G:0.21, T:0.42
Consensus pattern (27 bp):
GGGTATTTTAGTAATTTTATAAACTAA
Found at i:92393339 original size:81 final size:81
Alignment explanation
Indices: 92393171--92393350 Score: 208
Period size: 81 Copynumber: 2.2 Consensus size: 81
92393161 TACAAATCGA
*
92393171 GAGTATTTT-GATAATTTCACAAATCAGGGGTATTTTGGTAATTTTACAAGTCAGGGGTATTTTA
1 GAGTATTTTAG-TAATTTTACAAATCAGGGGTATTTTGGTAATTTTACAAGTCAGGGGTATTTTA
*
92393235 GTAATTTTACAAACCAG
65 GTAATTTTACAAACAAG
*
92393252 GAGTATTTTAGTAATTTTACAAA-CTAGGGGTATTTTGGTAATTTTAC-TGATC-GAGGGTATTT
1 GAGTATTTTAGTAATTTTACAAATC-AGGGGTATTTTGGTAATTTTACAAG-TCAG-GGGTATTT
* **
92393314 TGGTAATTTTGTAAACTAAG
63 TAGTAATTTTACAAAC-AAG
* *
92393334 G-GTATTTCAATAATTTT
1 GAGTATTTTAGTAATTTT
92393351 GTAAATCGAG
Statistics
Matches: 86, Mismatches: 8, Indels: 10
0.83 0.08 0.10
Matches are distributed among these distances:
80 3 0.03
81 79 0.92
82 4 0.05
ACGTcount: A:0.31, C:0.08, G:0.20, T:0.42
Consensus pattern (81 bp):
GAGTATTTTAGTAATTTTACAAATCAGGGGTATTTTGGTAATTTTACAAGTCAGGGGTATTTTAG
TAATTTTACAAACAAG
Found at i:92393374 original size:27 final size:27
Alignment explanation
Indices: 92393344--92393620 Score: 383
Period size: 27 Copynumber: 10.3 Consensus size: 27
92393334 GGTATTTCAA
* * *
92393344 TAATTTTGTAAATCGAGGATAAAATAG
1 TAATTCTGTAAATCGAGGGTAAAATGG
92393371 TAATTCTGTAAATCGAGGGTAAAATGG
1 TAATTCTGTAAATCGAGGGTAAAATGG
* *
92393398 TAATTTTATAAATCGAGGGTAAAATGG
1 TAATTCTGTAAATCGAGGGTAAAATGG
* *
92393425 TAATTTTATAAATCGAGGGTAAAATGG
1 TAATTCTGTAAATCGAGGGTAAAATGG
*
92393452 TAATTCTGTAAATCGAGGGTAAAATAG
1 TAATTCTGTAAATCGAGGGTAAAATGG
* * *
92393479 TAATTCTATAAATCGAAGGTAAAACGG
1 TAATTCTGTAAATCGAGGGTAAAATGG
** * *
92393506 TAATTCTGTAAATTAAGGGTAAAACGA
1 TAATTCTGTAAATCGAGGGTAAAATGG
**
92393533 TAATTCTGTAAATCGAGGGTAAAACAG
1 TAATTCTGTAAATCGAGGGTAAAATGG
* *
92393560 TAATTTTGTAAATCGAGGGTAAAACGG
1 TAATTCTGTAAATCGAGGGTAAAATGG
92393587 TAATTCTGTAAATCGAGGGTAAAATGG
1 TAATTCTGTAAATCGAGGGTAAAATGG
92393614 TAATTCT
1 TAATTCT
92393621 ATCTTATTTC
Statistics
Matches: 225, Mismatches: 25, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 225 1.00
ACGTcount: A:0.40, C:0.07, G:0.22, T:0.31
Consensus pattern (27 bp):
TAATTCTGTAAATCGAGGGTAAAATGG
Found at i:92393665 original size:27 final size:25
Alignment explanation
Indices: 92393635--92393719 Score: 80
Period size: 27 Copynumber: 3.2 Consensus size: 25
92393625 TATTTCAGTG
92393635 ATTTTACAAATCGAGGATATTTGGGTA
1 ATTTTACAAATCGAGG-TATTT-GGTA
* *
92393662 ATTTTATAAATCGGGGGTACTTTGGTA
1 ATTTTACAAATC-GAGGTA-TTTGGTA
* *
92393689 ATTTTACAAGTCGAAGGTATTTCAGTA
1 ATTTTACAAATCG-AGGTATTT-GGTA
92393716 ATTT
1 ATTT
92393720 GGTAAACTAA
Statistics
Matches: 48, Mismatches: 6, Indels: 8
0.77 0.10 0.13
Matches are distributed among these distances:
26 4 0.08
27 38 0.79
28 6 0.12
ACGTcount: A:0.31, C:0.08, G:0.21, T:0.40
Consensus pattern (25 bp):
ATTTTACAAATCGAGGTATTTGGTA
Found at i:92403819 original size:44 final size:42
Alignment explanation
Indices: 92403751--92403851 Score: 105
Period size: 44 Copynumber: 2.3 Consensus size: 42
92403741 CCGATATGTT
* * * *
92403751 TTTTCGTGTAAGACCACATTTGGGACGTTGGGATCG-ACTTATGA
1 TTTT-GTGTAAGACCACATCTGGGACATCGGCATCGTA-TT-TGA
**
92403795 TTTATGTGTAAGACCATGTCTGGGACATCGGCATCGTATTTGA
1 TTT-TGTGTAAGACCACATCTGGGACATCGGCATCGTATTTGA
92403838 TTTTGTGTAAGACC
1 TTTTGTGTAAGACC
92403852 CTGTTTAGAA
Statistics
Matches: 49, Mismatches: 6, Indels: 6
0.80 0.10 0.10
Matches are distributed among these distances:
42 11 0.22
43 6 0.12
44 30 0.61
45 2 0.04
ACGTcount: A:0.23, C:0.16, G:0.26, T:0.36
Consensus pattern (42 bp):
TTTTGTGTAAGACCACATCTGGGACATCGGCATCGTATTTGA
Found at i:92411480 original size:43 final size:43
Alignment explanation
Indices: 92411325--92411481 Score: 167
Period size: 43 Copynumber: 3.7 Consensus size: 43
92411315 TGTGTTTTCG
* *
92411325 TGTAAGACCACGTCTGGGACGTTGGCATCGACT-TATGATTTACG
1 TGTAAGACCACGTCTGGGACGTTGGCATCGA-TATTTGA-TTACA
* * * * * * *
92411369 TCTAAGACCACGTCTAGGACATCGGTATC-AGATTTGATTTCA
1 TGTAAGACCACGTCTGGGACGTTGGCATCGATATTTGATTACA
* *
92411411 TGTAAGACCATGTCTGGGATAG-TGGCATCGATATTTGATTACA
1 TGTAAGACCACGTCTGGGA-CGTTGGCATCGATATTTGATTACA
92411454 TGTAAGACCACGTCTGGGACGTTGGCAT
1 TGTAAGACCACGTCTGGGACGTTGGCAT
92411482 TGTACGAGCT
Statistics
Matches: 89, Mismatches: 20, Indels: 9
0.75 0.17 0.08
Matches are distributed among these distances:
42 25 0.28
43 40 0.45
44 24 0.27
ACGTcount: A:0.25, C:0.19, G:0.25, T:0.30
Consensus pattern (43 bp):
TGTAAGACCACGTCTGGGACGTTGGCATCGATATTTGATTACA
Found at i:92413731 original size:40 final size:40
Alignment explanation
Indices: 92413637--92413781 Score: 175
Period size: 40 Copynumber: 3.6 Consensus size: 40
92413627 TACTCGAATG
* *
92413637 ATATCCGGGCTAAGTCCCGAAGACTTTTGTGCTAAGCGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCT-AGCGACT
* *
92413678 ACATCCGGACTAAGAT-CCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAG-TCCCGAAGGCATTTGTGCTAGCGACT
* * *
92413718 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGCGACT
* * *
92413758 ATATCTGGGTTAAGACCCGAAGGC
1 ATATCCGGGCTAAGTCCCGAAGGC
92413782 CTTGTGCGAG
Statistics
Matches: 90, Mismatches: 12, Indels: 5
0.84 0.11 0.05
Matches are distributed among these distances:
39 1 0.01
40 61 0.68
41 27 0.30
42 1 0.01
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.24
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGCGACT
Found at i:92417901 original size:85 final size:85
Alignment explanation
Indices: 92417758--92417936 Score: 322
Period size: 85 Copynumber: 2.1 Consensus size: 85
92417748 GGCCGGCCAT
*
92417758 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
1 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGCTAGTGCATTAT
*
92417823 ATAAGGATTAATAAAATAAA
66 ATAAGGATTAAGAAAATAAA
92417843 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGCTAGTGCATTAT
1 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGCTAGTGCATTAT
*
92417908 GTAAGGATTAAGAAAATAAA
66 ATAAGGATTAAGAAAATAAA
*
92417928 GGGCATGGG
1 GAGCATGGG
92417937 CAATAAAATA
Statistics
Matches: 90, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
85 90 1.00
ACGTcount: A:0.38, C:0.09, G:0.27, T:0.26
Consensus pattern (85 bp):
GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGCTAGTGCATTAT
ATAAGGATTAAGAAAATAAA
Found at i:92419253 original size:47 final size:47
Alignment explanation
Indices: 92419202--92419734 Score: 717
Period size: 47 Copynumber: 11.1 Consensus size: 47
92419192 TTAGGATTTT
* *
92419202 ATGTGATGGATGTGAACATGCGTATGTGTGATAAGGCCGAATGGTCA
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
***
92419249 ATGTGATGAATGTGAACCCGTATATATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAA--C--ATGCGTATGTGTGATAAGGCCGAATGGCCA
92419300 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
* *
92419347 CTGTGATGGATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
***
92419394 ATGTGATGAATGTGAACCCGTATATATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAA--C--ATGCGTATGTGTGATAAGGCCGAATGGCCA
92419445 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
*** *
92419492 ATGTGATGAATGTGAACCTGTATATATATATGCGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAA-C-----ATGCGTATGTGTGATAAGGCCGAATGGCCA
92419545 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
92419592 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCG-ATGGCCA
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
* ** *
92419638 ATGTGATGAATGTGAACATGCATAAATGAGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
** * * * *
92419685 ATGTGATGAATGTGAACATGAATATATGTGGTAAGGCTGAATGGCTA
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
92419732 ATG
1 ATG
92419735 CGAAACGTGT
Statistics
Matches: 435, Mismatches: 36, Indels: 30
0.87 0.07 0.06
Matches are distributed among these distances:
46 42 0.10
47 260 0.60
48 1 0.00
49 4 0.01
51 85 0.20
52 1 0.00
53 42 0.10
ACGTcount: A:0.31, C:0.12, G:0.30, T:0.26
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
Found at i:92419313 original size:98 final size:94
Alignment explanation
Indices: 92419202--92419734 Score: 717
Period size: 98 Copynumber: 5.5 Consensus size: 94
92419192 TTAGGATTTT
* * *
92419202 ATGTGATGGATGTGAACATGCGTATGTGTGATAAGGCCGAATGGTCAATGTGATGAATGTGAACC
1 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAA--
***
92419267 CGTATATATATGTGTGATAAGGCCGAATGGCCA
64 C--ATGCGTATGTGTGATAAGGCCGAATGGCCA
* * *
92419300 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCACTGTGATGGATGTGAACA
1 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA
92419365 TGCGTATGTGTGATAAGGCCGAATGGCCA
66 TGCGTATGTGTGATAAGGCCGAATGGCCA
**
92419394 ATGTGATGAATGTGAACCCGTATATATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTG
1 ATGTGATGAATGTGAA--C--ATGCATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTG
92419459 AACATGCGTATGTGTGATAAGGCCGAATGGCCA
62 AACATGCGTATGTGTGATAAGGCCGAATGGCCA
** *
92419492 ATGTGATGAATGTGAACCTGTATATATATATGCGTGATAAGGCCGAATGGCCAATGTGATGAATG
1 ATGTGATGAATGTGAA-C-----ATGCATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATG
92419557 TGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
60 TGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
*
92419592 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCG-ATGGCCAATGTGATGAATGTGAACA
1 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA
* ** *
92419656 TGCATAAATGAGATAAGGCCGAATGGCCA
66 TGCGTATGTGTGATAAGGCCGAATGGCCA
* * * * *
92419685 ATGTGATGAATGTGAACATGAATATATGTGGTAAGGCTGAATGGCTAATG
1 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCAATG
92419735 CGAAACGTGT
Statistics
Matches: 399, Mismatches: 28, Indels: 20
0.89 0.06 0.04
Matches are distributed among these distances:
93 84 0.21
94 70 0.18
96 2 0.01
97 2 0.01
98 147 0.37
99 1 0.00
100 93 0.23
ACGTcount: A:0.31, C:0.12, G:0.30, T:0.26
Consensus pattern (94 bp):
ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA
TGCGTATGTGTGATAAGGCCGAATGGCCA
Found at i:92419357 original size:145 final size:144
Alignment explanation
Indices: 92419202--92419734 Score: 774
Period size: 145 Copynumber: 3.7 Consensus size: 144
92419192 TTAGGATTTT
* * *
92419202 ATGTGATGGATGTGAACATGCGTATGTGTGATAAGGCCGAATGGTCAATGTGATGAATGTGAACC
1 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACC
92419267 CGTATATATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCGTATGTGTGAT
66 CG-ATATATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCGTATGTGTGAT
92419332 AAGGCCGAATGGCCA
130 AAGGCCGAATGGCCA
* * *
92419347 CTGTGATGGATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACC
1 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACC
92419412 CGTATATATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCGTATGTGTGAT
66 CG-ATATATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCGTATGTGTGAT
92419477 AAGGCCGAATGGCCA
130 AAGGCCGAATGGCCA
** *
92419492 ATGTGATGAATGTGAACCTGTATATATATATGCGTGATAAGGCCGAATGGCCAATGTGATGAATG
1 ATGTGATGAATGTGAA-C-----ATGCATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATG
***
92419557 TGAA--C-ATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCGTATGT
60 TGAACCCGATATATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCGTATGT
92419619 GTGATAAGGCCG-ATGGCCA
125 GTGATAAGGCCGAATGGCCA
** * *
92419638 ATGTGATGAATGTGAACATGCATAAATGAGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA
1 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACC
* * *
92419703 TGA-ATATATGTG-G-TAAGGCTGAATGGCTAATG
66 CGATATATATGTGTGATAAGGCCGAATGGCCAATG
92419735 CGAAACGTGT
Statistics
Matches: 356, Mismatches: 23, Indels: 23
0.89 0.06 0.06
Matches are distributed among these distances:
140 57 0.16
141 1 0.00
142 6 0.02
143 1 0.00
145 158 0.44
146 24 0.07
147 66 0.19
149 1 0.00
151 42 0.12
ACGTcount: A:0.31, C:0.12, G:0.30, T:0.26
Consensus pattern (144 bp):
ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACC
CGATATATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCGTATGTGTGATA
AGGCCGAATGGCCA
Found at i:92419449 original size:24 final size:24
Alignment explanation
Indices: 92419421--92419496 Score: 61
Period size: 24 Copynumber: 3.2 Consensus size: 24
92419411 CCGTATATAT
92419421 ATGTGTGATAAGGCCGAATGGCCA
1 ATGTGTGATAAGGCCGAATGGCCA
* * **
92419445 ATGTGATGA-ATGTG--AACAT-GCGT
1 ATGTG-TGATAAG-GCCGA-ATGGCCA
92419468 ATGTGTGATAAGGCCGAATGGCCA
1 ATGTGTGATAAGGCCGAATGGCCA
92419492 ATGTG
1 ATGTG
92419497 ATGAATGTGA
Statistics
Matches: 37, Mismatches: 8, Indels: 14
0.63 0.14 0.24
Matches are distributed among these distances:
22 4 0.11
23 12 0.32
24 17 0.46
25 4 0.11
ACGTcount: A:0.29, C:0.13, G:0.33, T:0.25
Consensus pattern (24 bp):
ATGTGTGATAAGGCCGAATGGCCA
Found at i:92419572 original size:23 final size:23
Alignment explanation
Indices: 92419545--92419619 Score: 57
Period size: 23 Copynumber: 3.2 Consensus size: 23
92419535 CGAATGGCCA
92419545 ATGTGATGAATGTGAACATGCGT
1 ATGTGATGAATGTGAACATGCGT
* * **
92419568 ATGTG-TGATAAG-G-CCGAATGGCCA
1 ATGTGATGA-ATGTGAAC--AT-GCGT
92419592 ATGTGATGAATGTGAACATGCGT
1 ATGTGATGAATGTGAACATGCGT
92419615 ATGTG
1 ATGTG
92419620 TGATAAGGCC
Statistics
Matches: 37, Mismatches: 8, Indels: 14
0.63 0.14 0.24
Matches are distributed among these distances:
21 1 0.03
22 4 0.11
23 16 0.43
24 11 0.30
25 4 0.11
26 1 0.03
ACGTcount: A:0.29, C:0.11, G:0.32, T:0.28
Consensus pattern (23 bp):
ATGTGATGAATGTGAACATGCGT
Found at i:92419797 original size:46 final size:46
Alignment explanation
Indices: 92419708--92419798 Score: 110
Period size: 46 Copynumber: 2.0 Consensus size: 46
92419698 GAACATGAAT
* ** * *
92419708 ATATGTGGTAAGGCTGAATGGCTAATGCGAAACGTGTATGAGATGG
1 ATATGTGGTAAAGCCAAATGGCTAATGCGAAACATGTACGAGATGG
* * *
92419754 ATATGTGGTAAAGCCAAATGGCTAATGTGAGATATGTACGAGATG
1 ATATGTGGTAAAGCCAAATGGCTAATGCGAAACATGTACGAGATG
92419799 TGTATATATA
Statistics
Matches: 37, Mismatches: 8, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
46 37 1.00
ACGTcount: A:0.33, C:0.09, G:0.32, T:0.26
Consensus pattern (46 bp):
ATATGTGGTAAAGCCAAATGGCTAATGCGAAACATGTACGAGATGG
Found at i:92419993 original size:37 final size:37
Alignment explanation
Indices: 92419943--92420087 Score: 236
Period size: 37 Copynumber: 3.9 Consensus size: 37
92419933 GGAAATATAT
*
92419943 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACATGTGGAGATTATG
*
92419980 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACATGTGGAGATTATG
* *
92420017 TCCGGGTAAGACCCGATGACTACATGTGGATATTTTG
1 TCCGGGTAAGACCCGATGACTACATGTGGAGATTATG
* *
92420054 TCCGGGTAAGACCCGATAACTTCATGTGGAGATT
1 TCCGGGTAAGACCCGATGACTACATGTGGAGATT
92420088 TCGTCTGAGC
Statistics
Matches: 102, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 102 1.00
ACGTcount: A:0.25, C:0.19, G:0.30, T:0.26
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACATGTGGAGATTATG
Found at i:92430306 original size:39 final size:40
Alignment explanation
Indices: 92430206--92430429 Score: 219
Period size: 40 Copynumber: 5.7 Consensus size: 40
92430196 TCGAATGATG
* * *
92430206 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAC-CAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAT
* *
92430245 ATCCGGACTAAGAT-CCGAAGGCATTTGTGTGAGTTACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAT
* * *
92430286 TCCAGGCTAAG-CCCGAAGGCATTGGTGC-AGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
*
92430324 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
* * *
92430363 AACTGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT-AT
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
* * *
92430403 AACCGAGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
92430430 AACGAGTAGC
Statistics
Matches: 156, Mismatches: 21, Indels: 14
0.82 0.11 0.07
Matches are distributed among these distances:
38 18 0.12
39 31 0.20
40 98 0.63
41 9 0.06
ACGTcount: A:0.25, C:0.22, G:0.26, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
Found at i:92430342 original size:78 final size:80
Alignment explanation
Indices: 92430210--92430429 Score: 238
Period size: 78 Copynumber: 2.8 Consensus size: 80
92430200 ATGATGTCCG
* * * *
92430210 GGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCG-GACTAAGAT-CCGAAGGCATTTG
1 GGCTAAGTCCCGAAGGCATTGGTGC-AAGTTACTATAACCGAG-CTAAG-TCCCGAAGGCATTTG
* *
92430272 TGTGAGTTACTA-ATTCCA
63 TGCGAGTTACTATA-ACCA
* *
92430290 GGCTAAG-CCCGAAGGCATTGGTGC-AGTTACTA-AATCCGGGTTAAGTCCCGAAGGCATTTGTG
1 GGCTAAGTCCCGAAGGCATTGGTGCAAGTTACTATAA-CCGAGCTAAGTCCCGAAGGCATTTGTG
**
92430352 CGAGTTACTATAACTG
65 CGAGTTACTATAACCA
* *
92430368 GGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTATAACCGAGCTATGTCCCGAAGGCATTTG
1 GGCTAAGTCCCGAAGGCATTGGTGCAAGTTACTATAACCGAGCTAAGTCCCGAAGGCATTTG
92430430 AACGAGTAGC
Statistics
Matches: 119, Mismatches: 13, Indels: 16
0.80 0.09 0.11
Matches are distributed among these distances:
77 2 0.02
78 45 0.38
79 27 0.23
80 43 0.36
81 2 0.02
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (80 bp):
GGCTAAGTCCCGAAGGCATTGGTGCAAGTTACTATAACCGAGCTAAGTCCCGAAGGCATTTGTGC
GAGTTACTATAACCA
Found at i:92433604 original size:40 final size:40
Alignment explanation
Indices: 92433549--92433773 Score: 195
Period size: 40 Copynumber: 5.6 Consensus size: 40
92433539 CTTGCACAAG
* * * * *
92433549 GCCTTCGGGTCTTAGCCCTGATGTGGTCACCAGCATAAAT
1 GCCTTCGGGTCTTAGCCCTGATATAGTCGCTAGCACAAAT
* *
92433589 GCCTTCGGGACTTAG-CCTGGATATAGTCGCTAGAACAAAT
1 GCCTTCGGGTCTTAGCCCT-GATATAGTCGCTAGCACAAAT
* * *
92433629 GCCTTCGGGTTTTAGCCCGGATATAATCGCTAGCACAAAT
1 GCCTTCGGGTCTTAGCCCTGATATAGTCGCTAGCACAAAT
* * * *
92433669 GCCTTCGGGTCTTAGCCCGGATATAG-CAACTCGCACGAAT
1 GCCTTCGGGTCTTAGCCCTGATATAGTC-GCTAGCACAAAT
** * * * *
92433709 GCCTTCGAATCTTAGTCCGGTTATAGTCACCTAGCACAAAAT
1 GCCTTCGGGTCTTAGCCCTGATATAGTC-GCTAGCAC-AAAT
* *
92433751 -CCTTCGGGACTTAGCCCGGATAT
1 GCCTTCGGGTCTTAGCCCTGATAT
92433774 CATTCGAATA
Statistics
Matches: 151, Mismatches: 29, Indels: 9
0.80 0.15 0.05
Matches are distributed among these distances:
39 4 0.03
40 116 0.77
41 28 0.19
42 3 0.02
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (40 bp):
GCCTTCGGGTCTTAGCCCTGATATAGTCGCTAGCACAAAT
Found at i:92433683 original size:80 final size:81
Alignment explanation
Indices: 92433575--92433773 Score: 226
Period size: 80 Copynumber: 2.5 Consensus size: 81
92433565 CCTGATGTGG
* * * **
92433575 TCACC-AGCATAAATGCCTTCGGGACTTAGCCTGGATATAGTC-GCTAGAACAAATGCCTTCGGG
1 TCACCTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAG-CAACTAGAACAAATGCCTTCGAA
*
92433638 TTTTAGCCCGGATATAA
65 TCTTAGCCCGGATATAA
* * * * *
92433655 TC-GCTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATAGCAACTCGCACGAATGCCTTCGAAT
1 TCACCTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAGCAACTAGAACAAATGCCTTCGAAT
* * *
92433719 CTTAGTCCGGTTATAG
66 CTTAGCCCGGATATAA
92433735 TCACCTAGCACAAAAT-CCTTCGGGACTTAGCCCGGATAT
1 TCACCTAGCAC-AAATGCCTTCGGGACTTAGCCCGGATAT
92433774 CATTCGAATA
Statistics
Matches: 99, Mismatches: 16, Indels: 7
0.81 0.13 0.06
Matches are distributed among these distances:
79 2 0.02
80 64 0.65
81 29 0.29
82 4 0.04
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.26
Consensus pattern (81 bp):
TCACCTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAGCAACTAGAACAAATGCCTTCGAAT
CTTAGCCCGGATATAA
Found at i:92443650 original size:29 final size:29
Alignment explanation
Indices: 92443569--92443720 Score: 136
Period size: 29 Copynumber: 5.3 Consensus size: 29
92443559 GTGAGCATGA
* *
92443569 ATATG-ATGTGATTTGGGCCAGATGGGCC
1 ATATGAATGTGAATTGGGCCTGATGGGCC
* ** ** *
92443597 ATATAAATAAG-ATTGGGCCCAATGGACC
1 ATATGAATGTGAATTGGGCCTGATGGGCC
92443625 ATATGAATGTGAATTGGGCCTGATGGGCC
1 ATATGAATGTGAATTGGGCCTGATGGGCC
*
92443654 ATATGAACGTGAATTGGGCC-GAATGGGCC
1 ATATGAATGTGAATTGGGCCTG-ATGGGCC
*
92443683 ATAT-AGATGAG-ATTGGGCCT-AGTGGGCC
1 ATATGA-ATGTGAATTGGGCCTGA-TGGGCC
*
92443711 ATATGCATGT
1 ATATGAATGT
92443721 ATGTAGGGGT
Statistics
Matches: 99, Mismatches: 18, Indels: 14
0.76 0.14 0.11
Matches are distributed among these distances:
27 1 0.01
28 48 0.48
29 50 0.51
ACGTcount: A:0.28, C:0.15, G:0.32, T:0.26
Consensus pattern (29 bp):
ATATGAATGTGAATTGGGCCTGATGGGCC
Found at i:92443656 original size:57 final size:58
Alignment explanation
Indices: 92443569--92443715 Score: 162
Period size: 57 Copynumber: 2.6 Consensus size: 58
92443559 GTGAGCATGA
* *
92443569 ATATG-ATGTGATTTGGGCCAGATGGGCCATAT-AA-ATAAGATTGGGCCCAATGGACC
1 ATATGAATGTGAATTGGGCCTGATGGGCCATATGAACATAA-ATTGGGCCCAATGGACC
* * * *
92443625 ATATGAATGTGAATTGGGCCTGATGGGCCATATGAACGTGAATTGGGCCGAATGGGCC
1 ATATGAATGTGAATTGGGCCTGATGGGCCATATGAACATAAATTGGGCCCAATGGACC
*
92443683 ATAT-AGATGAG-ATTGGGCCT-AGTGGGCCATATG
1 ATATGA-ATGTGAATTGGGCCTGA-TGGGCCATATG
92443716 CATGTATGTA
Statistics
Matches: 79, Mismatches: 7, Indels: 9
0.83 0.07 0.09
Matches are distributed among these distances:
56 6 0.08
57 46 0.58
58 25 0.32
59 2 0.03
ACGTcount: A:0.28, C:0.15, G:0.32, T:0.25
Consensus pattern (58 bp):
ATATGAATGTGAATTGGGCCTGATGGGCCATATGAACATAAATTGGGCCCAATGGACC
Found at i:92446312 original size:18 final size:20
Alignment explanation
Indices: 92446278--92446327 Score: 59
Period size: 18 Copynumber: 2.5 Consensus size: 20
92446268 CTTGTTGTAG
92446278 GCCAAGGTGGTGCTCAGC-CA
1 GCCAAGG-GGTGCTCAGCGCA
*
92446298 -CCAAGGGGTGGTCAGCTGCA
1 GCCAAGGGGTGCTCAGC-GCA
92446318 GCCAAGGGGT
1 GCCAAGGGGT
92446328 CGTGGGCAGG
Statistics
Matches: 26, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
18 9 0.35
19 6 0.23
20 2 0.08
21 9 0.35
ACGTcount: A:0.20, C:0.26, G:0.40, T:0.14
Consensus pattern (20 bp):
GCCAAGGGGTGCTCAGCGCA
Found at i:92450576 original size:47 final size:47
Alignment explanation
Indices: 92450505--92450671 Score: 262
Period size: 47 Copynumber: 3.6 Consensus size: 47
92450495 CCCTTCGGGA
* * * * * *
92450505 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCGTTGGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
92450552 CCTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
92450599 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
92450646 CTTATCACATATATACACTTTCACAT
1 CTTATCACATATATACACTTTCACAT
92450672 ATATACACTT
Statistics
Matches: 111, Mismatches: 9, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
47 111 1.00
ACGTcount: A:0.28, C:0.29, G:0.09, T:0.34
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:92450671 original size:16 final size:16
Alignment explanation
Indices: 92450650--92450687 Score: 76
Period size: 16 Copynumber: 2.4 Consensus size: 16
92450640 TTAGGCCTTA
92450650 TCACATATATACACTT
1 TCACATATATACACTT
92450666 TCACATATATACACTT
1 TCACATATATACACTT
92450682 TCACAT
1 TCACAT
92450688 TCATCACATC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 22 1.00
ACGTcount: A:0.37, C:0.26, G:0.00, T:0.37
Consensus pattern (16 bp):
TCACATATATACACTT
Found at i:92450675 original size:63 final size:63
Alignment explanation
Indices: 92450603--92450734 Score: 255
Period size: 63 Copynumber: 2.1 Consensus size: 63
92450593 TTAGGCCTTA
*
92450603 TCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATACACTT
1 TCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTT
92450666 TCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTT
1 TCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTT
92450729 TCACAT
1 TCACAT
92450735 TTATTCAAAT
Statistics
Matches: 68, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
63 68 1.00
ACGTcount: A:0.32, C:0.28, G:0.06, T:0.34
Consensus pattern (63 bp):
TCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTT
Found at i:92453008 original size:40 final size:40
Alignment explanation
Indices: 92452964--92453187 Score: 287
Period size: 40 Copynumber: 5.6 Consensus size: 40
92452954 GCTACTCGTT
*
92452964 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
92453004 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
*
92453044 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGG-TTATAGTAACTCGCA
* *
92453084 CCAATGCCTTCGGG-CTTAGCCCGG-AATTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTA-TAGTAACTCGCA
** * * * *
92453123 CAAATGCCTTC-GGATCTTAGTTCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGTTATAGTAAC-TCGCA
92453164 CAAA-GCCTTCGGGACTTAGCCCGG
1 CAAATGCCTTCGGGACTTAGCCCGG
92453188 ACATCATTCG
Statistics
Matches: 162, Mismatches: 14, Indels: 16
0.84 0.07 0.08
Matches are distributed among these distances:
38 2 0.01
39 31 0.19
40 115 0.71
41 14 0.09
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
Found at i:92453142 original size:119 final size:120
Alignment explanation
Indices: 92452966--92453188 Score: 310
Period size: 119 Copynumber: 1.9 Consensus size: 120
92452956 TACTCGTTCA
* *
92452966 AATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGTT
1 AATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGAT
*
92453031 ATAGTAAC-TCGCACAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACC
66 ATAGTAACTTAGCACAAA-GCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACC
* **
92453086 AATGCCTTCGGG-CTTAGCCCGGA-ATTAGTAACTCGCACAAATGCCTTC-GGATCTTAGTTCGG
1 AATGCCTTCGGGACATAGCCCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGCCCGG
* * *
92453148 ATATGGTCACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
64 ATATAGTAACTTAGCACAAAGCCTTCGGGACTTAACCCGGA
92453189 CATCATTCGA
Statistics
Matches: 91, Mismatches: 9, Indels: 7
0.85 0.08 0.07
Matches are distributed among these distances:
118 4 0.04
119 67 0.74
120 20 0.22
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (120 bp):
AATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGAT
ATAGTAACTTAGCACAAAGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACC
Found at i:92456480 original size:85 final size:85
Alignment explanation
Indices: 92456351--92456529 Score: 349
Period size: 85 Copynumber: 2.1 Consensus size: 85
92456341 TATTTTATTG
*
92456351 CCCATGCCCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
1 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
92456416 TAGCCATAACATCTTGTCCA
66 TAGCCATAACATCTTGTCCA
92456436 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
1 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
92456501 TAGCCATAACATCTTGTCCA
66 TAGCCATAACATCTTGTCCA
92456521 CCCATGCTC
1 CCCATGCTC
92456530 ATGGCCGGCC
Statistics
Matches: 93, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
85 93 1.00
ACGTcount: A:0.26, C:0.28, G:0.08, T:0.37
Consensus pattern (85 bp):
CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
TAGCCATAACATCTTGTCCA
Found at i:92458203 original size:16 final size:16
Alignment explanation
Indices: 92458190--92458224 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
92458180 GTAAAAGCTG
92458190 AAATACCGAAAAGCCA
1 AAATACCGAAAAGCCA
* *
92458206 AAATGCCGAAAAGTCA
1 AAATACCGAAAAGCCA
92458222 AAA
1 AAA
92458225 ATTTGGGTAC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.57, C:0.20, G:0.14, T:0.09
Consensus pattern (16 bp):
AAATACCGAAAAGCCA
Found at i:92458467 original size:28 final size:28
Alignment explanation
Indices: 92458436--92458581 Score: 89
Period size: 29 Copynumber: 5.1 Consensus size: 28
92458426 GTGAGCATGA
92458436 ATAT-AATGTGATTTGGGCTAGATGGGCC
1 ATATAAATGTGATTTGGGCTA-ATGGGCC
* * *
92458464 ATATAAATGAGA-TTGGGCCCAATGGGCT
1 ATATAAATGTGATTTGGG-CTAATGGGCC
* * * * *
92458492 ATATGAGTGTGAATTAGGCCTAATGGGCT
1 ATATAAATGTG-ATTTGGGCTAATGGGCC
* * * *
92458521 ATATGAACGTGAATTGGGCCCAATGGGCC
1 ATATAAATGTGATTTGGG-CTAATGGGCC
* ** * *
92458550 ATATAAATGAGATTACGCCTAGTGGGCC
1 ATATAAATGTGATTTGGGCTAATGGGCC
92458578 ATAT
1 ATAT
92458582 GCATGTATGT
Statistics
Matches: 88, Mismatches: 25, Indels: 10
0.72 0.20 0.08
Matches are distributed among these distances:
28 39 0.44
29 46 0.52
30 3 0.03
ACGTcount: A:0.29, C:0.14, G:0.29, T:0.27
Consensus pattern (28 bp):
ATATAAATGTGATTTGGGCTAATGGGCC
Found at i:92458518 original size:29 final size:29
Alignment explanation
Indices: 92458479--92458553 Score: 105
Period size: 29 Copynumber: 2.6 Consensus size: 29
92458469 AATGAGATTG
**
92458479 GGCCCAATGGGCTATATGAGTGTGAATTA
1 GGCCCAATGGGCTATATGAACGTGAATTA
* *
92458508 GGCCTAATGGGCTATATGAACGTGAATTG
1 GGCCCAATGGGCTATATGAACGTGAATTA
*
92458537 GGCCCAATGGGCCATAT
1 GGCCCAATGGGCTATAT
92458554 AAATGAGATT
Statistics
Matches: 40, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
29 40 1.00
ACGTcount: A:0.27, C:0.17, G:0.31, T:0.25
Consensus pattern (29 bp):
GGCCCAATGGGCTATATGAACGTGAATTA
Found at i:92469496 original size:33 final size:33
Alignment explanation
Indices: 92469432--92469500 Score: 79
Period size: 33 Copynumber: 2.1 Consensus size: 33
92469422 AATCAAAAAT
* **
92469432 AGTGTGGGCCTGAGCCCATTTTAGTAACAGTATC
1 AGTGTGGGCCTAAGCCCATTACAGTAACAGTA-C
92469466 AGTG-GGGCCTAAGCCCATTACAG-AATCAGTAC
1 AGTGTGGGCCTAAGCCCATTACAGTAA-CAGTAC
92469498 AGT
1 AGT
92469501 ATGCAACCAG
Statistics
Matches: 31, Mismatches: 3, Indels: 4
0.82 0.08 0.11
Matches are distributed among these distances:
32 6 0.19
33 21 0.68
34 4 0.13
ACGTcount: A:0.28, C:0.22, G:0.26, T:0.25
Consensus pattern (33 bp):
AGTGTGGGCCTAAGCCCATTACAGTAACAGTAC
Found at i:92473892 original size:6 final size:6
Alignment explanation
Indices: 92473865--92473986 Score: 63
Period size: 6 Copynumber: 19.8 Consensus size: 6
92473855 TCTCAAAACT
* * * *
92473865 AGAATC AAAATG AGAATC AGAATT AGAATC AG-GTGAC AGAATC AGAATC
1 AGAATC AGAATC AGAATC AGAATC AGAATC AGAAT--C AGAATC AGAATC
* * * * * *
92473914 AGAATT AGAATC AAAATT AG-GTGAC AGAATT AGAATC AGAATC AGTATC
1 AGAATC AGAATC AGAATC AGAAT--C AGAATC AGAATC AGAATC AGAATC
92473963 AGGTAA-C AGAATC -GAAATC AGAAT
1 A-G-AATC AGAATC AG-AATC AGAAT
92473987 GTAAATGCAA
Statistics
Matches: 85, Mismatches: 20, Indels: 22
0.67 0.16 0.17
Matches are distributed among these distances:
5 5 0.06
6 68 0.80
7 9 0.11
8 3 0.04
ACGTcount: A:0.48, C:0.11, G:0.20, T:0.20
Consensus pattern (6 bp):
AGAATC
Found at i:92473896 original size:12 final size:12
Alignment explanation
Indices: 92473864--92473955 Score: 70
Period size: 12 Copynumber: 8.0 Consensus size: 12
92473854 TTCTCAAAAC
*
92473864 TAGAATCAAAAT
1 TAGAATCAGAAT
*
92473876 GAGAATCAGAAT
1 TAGAATCAGAAT
*
92473888 TAGAATCAG--G
1 TAGAATCAGAAT
92473898 T-G-A-CAGAAT
1 TAGAATCAGAAT
*
92473907 CAGAATCAGAAT
1 TAGAATCAGAAT
*
92473919 TAGAATCAAAAT
1 TAGAATCAGAAT
*
92473931 TAG-GTGACAGAAT
1 TAGAAT--CAGAAT
92473944 TAGAATCAGAAT
1 TAGAATCAGAAT
92473956 CAGTATCAGG
Statistics
Matches: 61, Mismatches: 11, Indels: 16
0.69 0.12 0.18
Matches are distributed among these distances:
7 3 0.05
8 1 0.02
9 1 0.02
10 2 0.03
11 2 0.03
12 43 0.70
13 8 0.13
14 1 0.02
ACGTcount: A:0.49, C:0.10, G:0.20, T:0.22
Consensus pattern (12 bp):
TAGAATCAGAAT
Found at i:92473906 original size:37 final size:37
Alignment explanation
Indices: 92473865--92473963 Score: 126
Period size: 37 Copynumber: 2.7 Consensus size: 37
92473855 TCTCAAAACT
* * * *
92473865 AGAATCAAAATGAGAATCAGAATTAGAATCAGGTGAC
1 AGAATCAGAATCAGAATCAGAATCAAAATCAGGTGAC
* *
92473902 AGAATCAGAATCAGAATTAGAATCAAAATTAGGTGAC
1 AGAATCAGAATCAGAATCAGAATCAAAATCAGGTGAC
* *
92473939 AGAATTAGAATCAGAATCAGTATCA
1 AGAATCAGAATCAGAATCAGAATCA
92473964 GGTAACAGAA
Statistics
Matches: 53, Mismatches: 9, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
37 53 1.00
ACGTcount: A:0.48, C:0.11, G:0.19, T:0.21
Consensus pattern (37 bp):
AGAATCAGAATCAGAATCAGAATCAAAATCAGGTGAC
Found at i:92473915 original size:31 final size:31
Alignment explanation
Indices: 92473877--92473986 Score: 114
Period size: 31 Copynumber: 3.4 Consensus size: 31
92473867 AATCAAAATG
92473877 AGAATCAGAATTAGAATCAGGTGACAGAATC
1 AGAATCAGAATTAGAATCAGGTGACAGAATC
*
92473908 AGAATCAGAATTAGAATCAAAATTAGGTGACAGAATT
1 AGAATCAGAATTAGAATC------AGGTGACAGAATC
* * *
92473945 AGAATCAGAATCAGTATCAGGTAACAGAATC
1 AGAATCAGAATTAGAATCAGGTGACAGAATC
92473976 -GAAATCAGAAT
1 AG-AATCAGAAT
92473987 GTAAATGCAA
Statistics
Matches: 67, Mismatches: 5, Indels: 14
0.78 0.06 0.16
Matches are distributed among these distances:
30 1 0.01
31 38 0.57
37 28 0.42
ACGTcount: A:0.47, C:0.12, G:0.20, T:0.21
Consensus pattern (31 bp):
AGAATCAGAATTAGAATCAGGTGACAGAATC
Found at i:92473986 original size:37 final size:36
Alignment explanation
Indices: 92473865--92473986 Score: 119
Period size: 37 Copynumber: 3.4 Consensus size: 36
92473855 TCTCAAAACT
* *
92473865 AGAATCAAAATGAGAATCAGAATTAGAATCAGGTGAC
1 AGAATC-AAATCAGAATCAGAATCAGAATCAGGTGAC
* * *
92473902 AGAATCAGAATCAGAATTAGAATCAAAATTAGGTGAC
1 AGAATCA-AATCAGAATCAGAATCAGAATCAGGTGAC
* *
92473939 AGAAT----T-AGAATCAGAATCAGTATCAGGTAAC
1 AGAATCAAATCAGAATCAGAATCAGAATCAGGTGAC
92473970 AGAATCGAAATCAGAAT
1 AGAATC-AAATCAGAAT
92473987 GTAAATGCAA
Statistics
Matches: 68, Mismatches: 10, Indels: 14
0.74 0.11 0.15
Matches are distributed among these distances:
31 25 0.37
32 1 0.01
36 2 0.03
37 40 0.59
ACGTcount: A:0.48, C:0.11, G:0.20, T:0.20
Consensus pattern (36 bp):
AGAATCAAATCAGAATCAGAATCAGAATCAGGTGAC
Found at i:92474530 original size:27 final size:27
Alignment explanation
Indices: 92474500--92474756 Score: 234
Period size: 27 Copynumber: 9.2 Consensus size: 27
92474490 GGGTAAAATG
* * *
92474500 GTAATTTTACCCCACAAGGGTATCTCA
1 GTAATTCTACCCTACAAGGGTATTTCA
*
92474527 GTAATTCTACCTTAC-AGGAGTATTTCA
1 GTAATTCTACCCTACAAGG-GTATTTCA
* *
92474554 ATAATTCTACCCTACAGGGGTATTTCA
1 GTAATTCTACCCTACAAGGGTATTTCA
* *
92474581 GTATTTCTACCCTACAAGGGTATTTCG
1 GTAATTCTACCCTACAAGGGTATTTCA
* * *
92474608 GTAATTTTACCCTATAAGGGTATTTTA
1 GTAATTCTACCCTACAAGGGTATTTCA
92474635 GTAATTCTACCCTACAAGGGTATTTC-
1 GTAATTCTACCCTACAAGGGTATTTCA
* *
92474661 GATATTTCTACCCTGCAAGGGTATTTCGGTATTTCA
1 G-TAATTCTACCCTACAA--G------GGTATTTCA
*
92474697 GTATTTCTACCCTACAAGGGTATTTC-
1 GTAATTCTACCCTACAAGGGTATTTCA
*
92474723 G-ACATTTCTACCCAACAAGGGTATTTCA
1 GTA-A-TTCTACCCTACAAGGGTATTTCA
*
92474751 ATAATT
1 GTAATT
92474757 TTGTAAATCG
Statistics
Matches: 189, Mismatches: 25, Indels: 32
0.77 0.10 0.13
Matches are distributed among these distances:
25 1 0.01
26 5 0.03
27 153 0.81
28 3 0.02
29 2 0.01
33 1 0.01
35 23 0.12
36 1 0.01
ACGTcount: A:0.28, C:0.21, G:0.16, T:0.36
Consensus pattern (27 bp):
GTAATTCTACCCTACAAGGGTATTTCA
Found at i:92474565 original size:54 final size:54
Alignment explanation
Indices: 92474501--92474756 Score: 262
Period size: 54 Copynumber: 4.6 Consensus size: 54
92474491 GGTAAAATGG
* * * * *
92474501 TAATTTTACCCCACAAGGGTATCTCAGTAATTCTACCTTAC-AGGAGTATTTCAA
1 TAATTCTACCCTACAAGGGTATTTCAGTAATTCTACCCTACAAGG-GTATTTCGA
* * *
92474555 TAATTCTACCCTACAGGGGTATTTCAGTATTTCTACCCTACAAGGGTATTTCGG
1 TAATTCTACCCTACAAGGGTATTTCAGTAATTCTACCCTACAAGGGTATTTCGA
* * *
92474609 TAATTTTACCCTATAAGGGTATTTTAGTAATTCTACCCTACAAGGGTATTTCGA
1 TAATTCTACCCTACAAGGGTATTTCAGTAATTCTACCCTACAAGGGTATTTCGA
* * *
92474663 TATTTCTACCCTGCAAGGGTATTTCGGTATTTCAGTATTTCTACCCTACAAGGGTATTTCGA
1 TAATTCTACCCTACAA--G------GGTATTTCAGTAATTCTACCCTACAAGGGTATTTCGA
* * * *
92474725 CATTTCTACCCAACAAGGGTATTTCAATAATT
1 TAATTCTACCCTACAAGGGTATTTCAGTAATT
92474757 TTGTAAATCG
Statistics
Matches: 168, Mismatches: 25, Indels: 18
0.80 0.12 0.09
Matches are distributed among these distances:
54 115 0.68
55 3 0.02
56 1 0.01
60 1 0.01
62 48 0.29
ACGTcount: A:0.28, C:0.21, G:0.15, T:0.36
Consensus pattern (54 bp):
TAATTCTACCCTACAAGGGTATTTCAGTAATTCTACCCTACAAGGGTATTTCGA
Found at i:92474692 original size:35 final size:35
Alignment explanation
Indices: 92474653--92474723 Score: 117
Period size: 35 Copynumber: 2.0 Consensus size: 35
92474643 ACCCTACAAG
*
92474653 GGTATTTC-GATATTTCTACCCTGCAAGGGTATTTC
1 GGTATTTCAG-TATTTCTACCCTACAAGGGTATTTC
92474688 GGTATTTCAGTATTTCTACCCTACAAGGGTATTTC
1 GGTATTTCAGTATTTCTACCCTACAAGGGTATTTC
92474723 G
1 G
92474724 ACATTTCTAC
Statistics
Matches: 34, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
35 33 0.97
36 1 0.03
ACGTcount: A:0.21, C:0.20, G:0.20, T:0.39
Consensus pattern (35 bp):
GGTATTTCAGTATTTCTACCCTACAAGGGTATTTC
Found at i:92474707 original size:62 final size:62
Alignment explanation
Indices: 92474626--92474749 Score: 203
Period size: 62 Copynumber: 2.0 Consensus size: 62
92474616 ACCCTATAAG
* * **
92474626 GGTATTTTAGTAATTCTACCCTACAAGGGTATTTCGATATTTCTACCCTGCAAGGGTATTTC
1 GGTATTTCAGTAATTCTACCCTACAAGGGTATTTCGACATTTCTACCCAACAAGGGTATTTC
*
92474688 GGTATTTCAGTATTTCTACCCTACAAGGGTATTTCGACATTTCTACCCAACAAGGGTATTTC
1 GGTATTTCAGTAATTCTACCCTACAAGGGTATTTCGACATTTCTACCCAACAAGGGTATTTC
92474750 AATAATTTTG
Statistics
Matches: 57, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
62 57 1.00
ACGTcount: A:0.25, C:0.21, G:0.17, T:0.37
Consensus pattern (62 bp):
GGTATTTCAGTAATTCTACCCTACAAGGGTATTTCGACATTTCTACCCAACAAGGGTATTTC
Found at i:92474730 original size:35 final size:35
Alignment explanation
Indices: 92474663--92474730 Score: 109
Period size: 35 Copynumber: 1.9 Consensus size: 35
92474653 GGTATTTCGA
* **
92474663 TATTTCTACCCTGCAAGGGTATTTCGGTATTTCAG
1 TATTTCTACCCTACAAGGGTATTTCGACATTTCAG
92474698 TATTTCTACCCTACAAGGGTATTTCGACATTTC
1 TATTTCTACCCTACAAGGGTATTTCGACATTTC
92474731 TACCCAACAA
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
35 30 1.00
ACGTcount: A:0.22, C:0.22, G:0.16, T:0.40
Consensus pattern (35 bp):
TATTTCTACCCTACAAGGGTATTTCGACATTTCAG
Found at i:92474808 original size:27 final size:27
Alignment explanation
Indices: 92474778--92475104 Score: 273
Period size: 27 Copynumber: 12.1 Consensus size: 27
92474768 GGGTAAAATA
* * *
92474778 GTAATTCTATAAATCAAGGGTACTTTG
1 GTAATTTTACAAATCAAGGGTATTTTG
* * **
92474805 GTAATTTTACAAGTTAAGGGTATTTCA
1 GTAATTTTACAAATCAAGGGTATTTTG
* ** ** *
92474832 ATAATTTTACAGGTTGAGGGTATTTTA
1 GTAATTTTACAAATCAAGGGTATTTTG
* * *
92474859 GTAATTTCACAAATTAGGGGTATTTTG
1 GTAATTTTACAAATCAAGGGTATTTTG
*
92474886 GTAATTTTACAAA-CTAGGGGTATTTTG
1 GTAATTTTACAAATC-AAGGGTATTTTG
* * *
92474913 ATAATTTTACAAACCAGGGGTATTTTG
1 GTAATTTTACAAATCAAGGGTATTTTG
* * *
92474940 GTAATTTTATAAA-CAAAGGTTATTTTA
1 GTAATTTTACAAATC-AAGGGTATTTTG
* *
92474967 GTAATTTTACAAACCAGGGGTATTTTG
1 GTAATTTTACAAATCAAGGGTATTTTG
** *
92474994 GTAATTTTGTAAACCAAGGGTATTTTG
1 GTAATTTTACAAATCAAGGGTATTTTG
* * * *
92475021 GTAATTTGAAAAACCAGGGGTATTTTG
1 GTAATTTTACAAATCAAGGGTATTTTG
* * *
92475048 GTGATTTTATAAA-CTAAGGGTATTTTA
1 GTAATTTTACAAATC-AAGGGTATTTTG
* *
92475075 GTAATTTTACAAATTAGGGGTATTTTG
1 GTAATTTTACAAATCAAGGGTATTTTG
92475102 GTA
1 GTA
92475105 CTTTGGTAAA
Statistics
Matches: 247, Mismatches: 47, Indels: 12
0.81 0.15 0.04
Matches are distributed among these distances:
26 2 0.01
27 243 0.98
28 2 0.01
ACGTcount: A:0.32, C:0.07, G:0.20, T:0.40
Consensus pattern (27 bp):
GTAATTTTACAAATCAAGGGTATTTTG
Found at i:92474851 original size:81 final size:81
Alignment explanation
Indices: 92474739--92475088 Score: 211
Period size: 81 Copynumber: 4.3 Consensus size: 81
92474729 TCTACCCAAC
** *
92474739 AAGGGTATTTCAATAATTTTGTAAATCGAGGGTAAAATAGTAA-TTCTATAAATCAAGGGTACTT
1 AAGGGTATTTCAATAATTTTACAAATCGAGGGTAAAATAGTAATTTC-ACAAATCAAGGGTACTT
**
92474803 TGGTAATTTTACAAGTT
65 TGGTAATTTTACAAACT
** * *** * * *
92474820 AAGGGTATTTCAATAATTTTACAGGTTGAGGGTATTTTAGTAATTTCACAAATTAGGGGTATTTT
1 AAGGGTATTTCAATAATTTTACAAATCGAGGGTAAAATAGTAATTTCACAAATCAAGGGTACTTT
92474885 GGTAATTTTACAAACT
66 GGTAATTTTACAAACT
* ** * *** * * * * *
92474901 AGGGGTATTTTGATAATTTTACAAA-CCAGGGGTATTTTGGTAATTTTATAAA-CAAAGGTTATT
1 AAGGGTATTTCAATAATTTTACAAATCGA-GGGTAAAATAGTAATTTCACAAATC-AAGGGTACT
* *
92474964 TTAGTAATTTTACAAACC
64 TTGGTAATTTTACAAACT
* *** ** * * *** * * * * * *
92474982 AGGGGTATTTTGGTAATTTTGTAAACCAAGGGTATTTTGGTAATTTGAAAAACCAGGGGTATTTT
1 AAGGGTATTTCAATAATTTTACAAATCGAGGGTAAAATAGTAATTTCACAAATCAAGGGTACTTT
* *
92475047 GGTGATTTTATAAACT
66 GGTAATTTTACAAACT
* *
92475063 AAGGGTATTTTAGTAATTTTACAAAT
1 AAGGGTATTTCAATAATTTTACAAAT
92475089 TAGGGGTATT
Statistics
Matches: 218, Mismatches: 46, Indels: 10
0.80 0.17 0.04
Matches are distributed among these distances:
80 1 0.00
81 211 0.97
82 6 0.03
ACGTcount: A:0.34, C:0.07, G:0.20, T:0.39
Consensus pattern (81 bp):
AAGGGTATTTCAATAATTTTACAAATCGAGGGTAAAATAGTAATTTCACAAATCAAGGGTACTTT
GGTAATTTTACAAACT
Found at i:92474891 original size:54 final size:54
Alignment explanation
Indices: 92474848--92475127 Score: 366
Period size: 54 Copynumber: 5.2 Consensus size: 54
92474838 TTACAGGTTG
* ** *
92474848 AGGGTATTTTAGTAATTTCACAAATTAGGGGTATTTTGGTAATTTTACAAACTA
1 AGGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTATAAACTA
* *
92474902 GGGGTATTTT-GATAATTTTACAAACCAGGGGTATTTTGGTAATTTTATAAACAA
1 AGGGTATTTTAG-TAATTTTACAAACCAGGGGTATTTTGGTAATTTTATAAACTA
* * *
92474956 AGGTTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTGTAAACCA
1 AGGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTATAAACTA
* * * *
92475010 AGGGTATTTTGGTAATTTGAAAAACCAGGGGTATTTTGGTGATTTTATAAACTA
1 AGGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTATAAACTA
** * **
92475064 AGGGTATTTTAGTAATTTTACAAATTAGGGGTATTTTGGTACTTTGGTAAACTA
1 AGGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTATAAACTA
*
92475118 A-AGTATTTTA
1 AGGGTATTTTA
92475128 AACAGAGATA
Statistics
Matches: 197, Mismatches: 27, Indels: 5
0.86 0.12 0.02
Matches are distributed among these distances:
53 9 0.05
54 187 0.95
55 1 0.01
ACGTcount: A:0.32, C:0.07, G:0.20, T:0.41
Consensus pattern (54 bp):
AGGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTATAAACTA
Found at i:92475096 original size:81 final size:81
Alignment explanation
Indices: 92474795--92475109 Score: 310
Period size: 81 Copynumber: 3.9 Consensus size: 81
92474785 TATAAATCAA
* ** * * **** *
92474795 GGGTACTTTGGTAATTTTACAAGTTAAGGGTATTTCAATAATTTTAC-AGGTTGAGGGTATTTTA
1 GGGTATTTTGGTAATTTTACAAACTAAGGGTATTTTAGTAATTTTACAAACCAG-GGGTATTTTG
* * **
92474859 GTAATTTCACAAATTAG
65 GTAATTTGAAAAACAAG
*
92474876 GGGTATTTTGGTAATTTTACAAACTAGGGGTATTTT-GATAATTTTACAAACCAGGGGTATTTTG
1 GGGTATTTTGGTAATTTTACAAACTAAGGGTATTTTAG-TAATTTTACAAACCAGGGGTATTTTG
* * *
92474940 GTAATTTTATAAACAAA
65 GTAATTTGAAAAACAAG
* * * * * ** *
92474957 GGTTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTGTAAACCAAGGGTATTTTGG
1 GGGTATTTTGGTAATTTTACAAACTAAGGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGG
*
92475022 TAATTTGAAAAACCAG
66 TAATTTGAAAAACAAG
* * **
92475038 GGGTATTTTGGTGATTTTATAAACTAAGGGTATTTTAGTAATTTTACAAATTAGGGGTATTTTGG
1 GGGTATTTTGGTAATTTTACAAACTAAGGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGG
*
92475103 TACTTTG
66 TAATTTG
92475110 GTAAACTAAA
Statistics
Matches: 192, Mismatches: 39, Indels: 6
0.81 0.16 0.03
Matches are distributed among these distances:
81 189 0.98
82 3 0.02
ACGTcount: A:0.31, C:0.07, G:0.21, T:0.41
Consensus pattern (81 bp):
GGGTATTTTGGTAATTTTACAAACTAAGGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGG
TAATTTGAAAAACAAG
Found at i:92480357 original size:27 final size:27
Alignment explanation
Indices: 92480326--92480503 Score: 187
Period size: 27 Copynumber: 6.6 Consensus size: 27
92480316 TAAATTGTAC
92480326 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
92480353 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
92480379 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
92480407 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* * *
92480435 AGCACTAAGTGTGAGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
92480462 AGCACTAAGTGTGCGAGTTGGTTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
92480489 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
92480504 GACTCAATAT
Statistics
Matches: 126, Mismatches: 22, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
27 104 0.83
28 22 0.17
ACGTcount: A:0.27, C:0.15, G:0.29, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:92480467 original size:82 final size:81
Alignment explanation
Indices: 92480327--92480477 Score: 223
Period size: 82 Copynumber: 1.9 Consensus size: 81
92480317 AAATTGTACA
* * *
92480327 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAAGTGT
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGAGAAATGAATACGATGCACTAAGTGT
92480392 GCGAATTGACCATGCG
66 GCGAATTGACCATGCG
** *
92480408 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGAGATTTGATTACG-TAGCACTAAGT
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGAGAAATGAATACGAT-GCACTAAGT
92480472 GTGCGA
64 GTGCGA
92480478 GTTGGTTATA
Statistics
Matches: 62, Mismatches: 6, Indels: 3
0.87 0.08 0.04
Matches are distributed among these distances:
81 16 0.26
82 46 0.74
ACGTcount: A:0.28, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGAGAAATGAATACGATGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:92485224 original size:24 final size:24
Alignment explanation
Indices: 92485179--92485224 Score: 58
Period size: 24 Copynumber: 1.9 Consensus size: 24
92485169 GATAATGATT
*
92485179 TGTTATATTTTTACTATTATTATA
1 TGTTATATTTTTACTATCATTATA
*
92485203 TGTTTTATTTTTA-TAGTCATTA
1 TGTTATATTTTTACTA-TCATTA
92485225 AAAATTAATA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 2 0.11
24 17 0.89
ACGTcount: A:0.26, C:0.04, G:0.07, T:0.63
Consensus pattern (24 bp):
TGTTATATTTTTACTATCATTATA
Found at i:92487334 original size:21 final size:21
Alignment explanation
Indices: 92487310--92487358 Score: 89
Period size: 21 Copynumber: 2.3 Consensus size: 21
92487300 AACTGGAAAG
92487310 TAAACCTACCAAGTAATAGCA
1 TAAACCTACCAAGTAATAGCA
92487331 TAAACCTACCAAGTAATAGCA
1 TAAACCTACCAAGTAATAGCA
92487352 TACAACC
1 TA-AACC
92487359 ATATTTAGCA
Statistics
Matches: 27, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
21 23 0.85
22 4 0.15
ACGTcount: A:0.47, C:0.27, G:0.08, T:0.18
Consensus pattern (21 bp):
TAAACCTACCAAGTAATAGCA
Found at i:92489488 original size:37 final size:37
Alignment explanation
Indices: 92489432--92489507 Score: 118
Period size: 37 Copynumber: 2.1 Consensus size: 37
92489422 ATGCGTAGAG
* *
92489432 TCCATTTAACAAAATTTCCAAAACTTG-CTTGTAGGTA
1 TCCATTTAAAAAAAATTCCAAAACTTGTC-TGTAGGTA
92489469 TCCATTTAAAAAAAATTCCAAAACTTGTCTGTAGGTA
1 TCCATTTAAAAAAAATTCCAAAACTTGTCTGTAGGTA
92489506 TC
1 TC
92489508 GATACTGACA
Statistics
Matches: 36, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
37 35 0.97
38 1 0.03
ACGTcount: A:0.37, C:0.18, G:0.11, T:0.34
Consensus pattern (37 bp):
TCCATTTAAAAAAAATTCCAAAACTTGTCTGTAGGTA
Found at i:92494071 original size:55 final size:53
Alignment explanation
Indices: 92493984--92494238 Score: 236
Period size: 55 Copynumber: 4.8 Consensus size: 53
92493974 ATTAGGGTTT
* *
92493984 AAGGATACCATGTAAGACCATGTCAAGGCATGGAAATTGGTCAGGTTTCTAAGGC
1 AAGGATACCATGTAAGACCATGTCAAGACATGG-AATTGGT-AAGTTTCTAAGGC
* * * *
92494039 AAGGATACCATGTAAGACCATGTTAAGACATGGCATTGATAAGTTACTATAAGGC
1 AAGGATACCATGTAAGACCATGTCAAGACATGGAATTGGTAAGTT--TCTAAGGC
* * * ** *
92494094 AAAGG-TCCCATGTAAGACCATGCCAAGGCATGGCGTTGGTGAG-TTCATAAGGC
1 -AAGGATACCATGTAAGACCATGTCAAGACATGGAATTGGTAAGTTTC-TAAGGC
* *
92494147 AAGGATACCATGTAAGACCAGGTCGAGACATGGCAA-TGGTAAGTTTC-AA---
1 AAGGATACCATGTAAGACCATGTCAAGACATGG-AATTGGTAAGTTTCTAAGGC
* * * *
92494196 AAGGATACCACGTAAGACCATGACAAGTCATGGAAATGGTAAG
1 AAGGATACCATGTAAGACCATGTCAAGACATGGAATTGGTAAG
92494239 GTACCCGTGT
Statistics
Matches: 165, Mismatches: 27, Indels: 22
0.77 0.13 0.10
Matches are distributed among these distances:
48 2 0.01
49 35 0.21
52 7 0.04
53 39 0.24
54 9 0.05
55 69 0.42
56 4 0.02
ACGTcount: A:0.35, C:0.17, G:0.26, T:0.22
Consensus pattern (53 bp):
AAGGATACCATGTAAGACCATGTCAAGACATGGAATTGGTAAGTTTCTAAGGC
Found at i:92494190 original size:108 final size:110
Alignment explanation
Indices: 92493991--92494191 Score: 291
Period size: 108 Copynumber: 1.8 Consensus size: 110
92493981 TTTAAGGATA
*
92493991 CCATGTAAGACCATGTCAAGGCATGGAAATTGGTCAGGTTTCTAAGGCAAGGATACCATGTAAGA
1 CCATGTAAGACCATGCCAAGGCATGGAAATTGGTCAGGTTTCTAAGGCAAGGATACCATGTAAGA
* * *
92494056 CCATGTTAAGACATGGCATTGATAAGTTACTATAAGGCAAAGGTC
66 CCAGGTCAAGACATGGCAATGATAAGTTACTATAAGGCAAAGGTC
** *
92494101 CCATGTAAGACCATGCCAAGGCATGG-CGTTGGTGA-G-TTCATAAGGCAAGGATACCATGTAAG
1 CCATGTAAGACCATGCCAAGGCATGGAAATTGGTCAGGTTTC-TAAGGCAAGGATACCATGTAAG
* *
92494163 ACCAGGTCGAGACATGGCAATGGTAAGTT
65 ACCAGGTCAAGACATGGCAATGATAAGTT
92494192 TCAAAAGGAT
Statistics
Matches: 81, Mismatches: 9, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
107 3 0.04
108 47 0.58
109 6 0.07
110 25 0.31
ACGTcount: A:0.33, C:0.17, G:0.27, T:0.23
Consensus pattern (110 bp):
CCATGTAAGACCATGCCAAGGCATGGAAATTGGTCAGGTTTCTAAGGCAAGGATACCATGTAAGA
CCAGGTCAAGACATGGCAATGATAAGTTACTATAAGGCAAAGGTC
Found at i:92494451 original size:16 final size:16
Alignment explanation
Indices: 92494430--92494460 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
92494420 ATAATTTTGA
92494430 TTAAGTAAGTAAGTAT
1 TTAAGTAAGTAAGTAT
*
92494446 TTAAGTAAGTTAGTA
1 TTAAGTAAGTAAGTA
92494461 AGTGAAGAAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.42, C:0.00, G:0.19, T:0.39
Consensus pattern (16 bp):
TTAAGTAAGTAAGTAT
Found at i:92500543 original size:20 final size:20
Alignment explanation
Indices: 92500518--92500559 Score: 84
Period size: 20 Copynumber: 2.1 Consensus size: 20
92500508 AGTACGTATG
92500518 ATACCTATGTGGTAGATGGT
1 ATACCTATGTGGTAGATGGT
92500538 ATACCTATGTGGTAGATGGT
1 ATACCTATGTGGTAGATGGT
92500558 AT
1 AT
92500560 TATGTATATA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.26, C:0.10, G:0.29, T:0.36
Consensus pattern (20 bp):
ATACCTATGTGGTAGATGGT
Found at i:92511529 original size:33 final size:33
Alignment explanation
Indices: 92511492--92511560 Score: 113
Period size: 33 Copynumber: 2.1 Consensus size: 33
92511482 TTAGATGTTT
*
92511492 AAGAGATT-GAAGGAGTGTTTTGAGGAGTGGATC
1 AAGAGATTGGAA-GAGAGTTTTGAGGAGTGGATC
92511525 AAGAGATTGGAAGAGAGTTTTGAGGAGTGGATC
1 AAGAGATTGGAAGAGAGTTTTGAGGAGTGGATC
92511558 AAG
1 AAG
92511561 GAAAGGGGGG
Statistics
Matches: 34, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
33 31 0.91
34 3 0.09
ACGTcount: A:0.33, C:0.03, G:0.39, T:0.25
Consensus pattern (33 bp):
AAGAGATTGGAAGAGAGTTTTGAGGAGTGGATC
Found at i:92515385 original size:40 final size:40
Alignment explanation
Indices: 92515330--92515521 Score: 278
Period size: 40 Copynumber: 4.8 Consensus size: 40
92515320 ATAACCACAA
* * * *
92515330 GCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
92515370 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
*
92515410 ACACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
* * *
92515450 GCACAAATGCCTTCGGGTCTTAGCCCAGATAAAATC-ACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGAT-ATATCAACTC
* *
92515490 GCATAAATGCCTTCGGGACTTAGCCCGGATAT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATAT
92515522 CATTCAAATG
Statistics
Matches: 138, Mismatches: 13, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
39 1 0.01
40 133 0.96
41 4 0.03
ACGTcount: A:0.27, C:0.29, G:0.20, T:0.24
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
Found at i:92518379 original size:19 final size:19
Alignment explanation
Indices: 92518355--92518402 Score: 60
Period size: 19 Copynumber: 2.5 Consensus size: 19
92518345 AAGGTAAAGG
*
92518355 ACACAGGCGTATCCGAAGC
1 ACACAGGCGTATCCCAAGC
* *
92518374 ACACAGACGTGTCCCAAGC
1 ACACAGGCGTATCCCAAGC
*
92518393 ACACAAGCGT
1 ACACAGGCGT
92518403 GTGCATTGTC
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
19 24 1.00
ACGTcount: A:0.33, C:0.33, G:0.23, T:0.10
Consensus pattern (19 bp):
ACACAGGCGTATCCCAAGC
Found at i:92525573 original size:42 final size:42
Alignment explanation
Indices: 92525518--92525633 Score: 135
Period size: 43 Copynumber: 2.7 Consensus size: 42
92525508 CATTGACTTA
92525518 TGATTTACGTGTAAGACCATGTTTGGGACATCAGCATCG-TATT
1 TGATTT-CGTGTAAGACCATGTTTGGGACAT-AGCATCGATATT
* * * *
92525561 TGATTTCGTGTAAGACCCTGTCTGGGATAATGGCATCGATATT
1 TGATTTCGTGTAAGACCATGTTTGGGA-CATAGCATCGATATT
* * *
92525604 TGATTACATGTAAGACCACGTTTGGGACAT
1 TGATTTCGTGTAAGACCATGTTTGGGACAT
92525634 TTGCGTTGTA
Statistics
Matches: 61, Mismatches: 10, Indels: 5
0.80 0.13 0.07
Matches are distributed among these distances:
42 27 0.44
43 34 0.56
ACGTcount: A:0.26, C:0.16, G:0.24, T:0.34
Consensus pattern (42 bp):
TGATTTCGTGTAAGACCATGTTTGGGACATAGCATCGATATT
Found at i:92534173 original size:25 final size:26
Alignment explanation
Indices: 92534143--92534193 Score: 86
Period size: 25 Copynumber: 2.0 Consensus size: 26
92534133 CCTTATAATA
92534143 TGAAAATAACCATTTTG-CCCCTAGG
1 TGAAAATAACCATTTTGACCCCTAGG
*
92534168 TGAAAATGACCATTTTGACCCCTAGG
1 TGAAAATAACCATTTTGACCCCTAGG
92534194 GATATGCTAT
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
25 16 0.67
26 8 0.33
ACGTcount: A:0.31, C:0.24, G:0.18, T:0.27
Consensus pattern (26 bp):
TGAAAATAACCATTTTGACCCCTAGG
Found at i:92534238 original size:21 final size:21
Alignment explanation
Indices: 92534214--92534275 Score: 90
Period size: 21 Copynumber: 3.0 Consensus size: 21
92534204 AATTAAGATG
*
92534214 CATGATTTGTACATGATATGC
1 CATGATATGTACATGATATGC
*
92534235 CATGATATGCACATGATATGC
1 CATGATATGTACATGATATGC
*
92534256 CATGATATGTTCAT-ATATGC
1 CATGATATGTACATGATATGC
92534276 ATGGGTTGGG
Statistics
Matches: 37, Mismatches: 4, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
20 6 0.16
21 31 0.84
ACGTcount: A:0.31, C:0.16, G:0.18, T:0.35
Consensus pattern (21 bp):
CATGATATGTACATGATATGC
Found at i:92534249 original size:11 final size:10
Alignment explanation
Indices: 92534225--92534264 Score: 71
Period size: 10 Copynumber: 3.9 Consensus size: 10
92534215 ATGATTTGTA
92534225 CATGATATGC
1 CATGATATGC
92534235 CATGATATGC
1 CATGATATGC
92534245 ACATGATATGC
1 -CATGATATGC
92534256 CATGATATG
1 CATGATATG
92534265 TTCATATATG
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
10 19 0.66
11 10 0.34
ACGTcount: A:0.33, C:0.17, G:0.20, T:0.30
Consensus pattern (10 bp):
CATGATATGC
Found at i:92542535 original size:93 final size:93
Alignment explanation
Indices: 92542426--92542641 Score: 360
Period size: 93 Copynumber: 2.3 Consensus size: 93
92542416 AGCCCATAAG
* *
92542426 CGAACTCGGACTCAACTCAACGAGCTCGGGCATTCGCATCCACAAGTGAACTCAGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCACAAGTGAACTCAGACTCAACTCA
92542491 ACAAGCTCGGATGCCTAGTTACATCTCT
66 ACAAGCTCGGATGCCTAGTTACATCTCT
* * *
92542519 CGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCACAAGTGAACTCAGACTCAACTCA
*
92542584 ACGAGCTCGGATGCCTAGTTACATCTCT
66 ACAAGCTCGGATGCCTAGTTACATCTCT
* *
92542612 CAAACTCTGACTCAACTCAACGAGTTCGGA
1 CGAACTCGGACTCAACTCAACGAGTTCGGA
92542642 TGCCCAAATA
Statistics
Matches: 115, Mismatches: 8, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
93 115 1.00
ACGTcount: A:0.29, C:0.31, G:0.19, T:0.22
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCACAAGTGAACTCAGACTCAACTCA
ACAAGCTCGGATGCCTAGTTACATCTCT
Found at i:92542538 original size:47 final size:47
Alignment explanation
Indices: 92542473--92542645 Score: 194
Period size: 47 Copynumber: 3.7 Consensus size: 47
92542463 ATCCACAAGT
* *
92542473 GAACTCAGACTCAACTCAACAAGCTCGGATGCCTAGTTACATCTCTC
1 GAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTCTC
* * * *
92542520 GAACTCGGACTCAACTCAACGAGTTCGGA---C-ATTTGCATC-CATAAGT
1 GAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTC-T---C
92542566 GAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTCTC
1 GAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTCTC
* * *
92542613 AAACTCTGACTCAACTCAACGAGTTCGGATGCC
1 GAACTCGGACTCAACTCAACGAGCTCGGATGCC
92542646 CAAATATCCT
Statistics
Matches: 104, Mismatches: 13, Indels: 18
0.77 0.10 0.13
Matches are distributed among these distances:
42 1 0.01
43 8 0.08
44 1 0.01
46 28 0.27
47 56 0.54
49 1 0.01
50 8 0.08
51 1 0.01
ACGTcount: A:0.29, C:0.30, G:0.18, T:0.23
Consensus pattern (47 bp):
GAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTCTC
Found at i:92542594 original size:46 final size:46
Alignment explanation
Indices: 92542419--92542594 Score: 189
Period size: 46 Copynumber: 3.8 Consensus size: 46
92542409 TGTAACCAGC
* *
92542419 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGACATTTGCAT
* * * * * *
92542465 CCACAAGTGAACTCAGACTCAACTCAACAAGCTCGGATGCCTAGTTACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGA---C-ATTTGCAT
*
92542515 CTC-T---CGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCAT
1 C-CATAAGCGAACTCGGACTCAACTCAACGAGCTCGGACATTTGCAT
*
92542558 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGA
92542595 TGCCTAGTTA
Statistics
Matches: 104, Mismatches: 17, Indels: 18
0.75 0.12 0.13
Matches are distributed among these distances:
42 1 0.01
43 8 0.08
44 1 0.01
46 60 0.58
47 26 0.25
49 1 0.01
50 6 0.06
51 1 0.01
ACGTcount: A:0.30, C:0.31, G:0.19, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGACATTTGCAT
Found at i:92544528 original size:25 final size:25
Alignment explanation
Indices: 92544482--92544532 Score: 66
Period size: 25 Copynumber: 2.0 Consensus size: 25
92544472 CCCTTATAAT
* ** *
92544482 GTGAAAATGATCATTTTTCCCCTAG
1 GTGAAAATGACCATGATACCCCTAG
92544507 GTGAAAATGACCATGATACCCCTAG
1 GTGAAAATGACCATGATACCCCTAG
92544532 G
1 G
92544533 GATATGCTAT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.31, C:0.22, G:0.20, T:0.27
Consensus pattern (25 bp):
GTGAAAATGACCATGATACCCCTAG
Found at i:92544577 original size:21 final size:21
Alignment explanation
Indices: 92544553--92544614 Score: 90
Period size: 21 Copynumber: 3.0 Consensus size: 21
92544543 AATTAAGATG
*
92544553 CATGATTTGTACATGATATGC
1 CATGATATGTACATGATATGC
*
92544574 CATGATATGCACATGATATGC
1 CATGATATGTACATGATATGC
*
92544595 CATGATATGTTCAT-ATATGC
1 CATGATATGTACATGATATGC
92544615 ATGGGTTGGG
Statistics
Matches: 37, Mismatches: 4, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
20 6 0.16
21 31 0.84
ACGTcount: A:0.31, C:0.16, G:0.18, T:0.35
Consensus pattern (21 bp):
CATGATATGTACATGATATGC
Found at i:92544588 original size:11 final size:10
Alignment explanation
Indices: 92544564--92544603 Score: 71
Period size: 10 Copynumber: 3.9 Consensus size: 10
92544554 ATGATTTGTA
92544564 CATGATATGC
1 CATGATATGC
92544574 CATGATATGC
1 CATGATATGC
92544584 ACATGATATGC
1 -CATGATATGC
92544595 CATGATATG
1 CATGATATG
92544604 TTCATATATG
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
10 19 0.66
11 10 0.34
ACGTcount: A:0.33, C:0.17, G:0.20, T:0.30
Consensus pattern (10 bp):
CATGATATGC
Found at i:92546667 original size:22 final size:22
Alignment explanation
Indices: 92546642--92546698 Score: 69
Period size: 22 Copynumber: 2.6 Consensus size: 22
92546632 TTGTATATGT
*
92546642 ATATGTGAACCCTAGGTGATTA
1 ATATGTGAACCCTAGGAGATTA
** *
92546664 ATATACGAACTCTAGGAGATTA
1 ATATGTGAACCCTAGGAGATTA
*
92546686 ACATGTGAACCCT
1 ATATGTGAACCCT
92546699 TAATGTGTAC
Statistics
Matches: 27, Mismatches: 8, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
22 27 1.00
ACGTcount: A:0.35, C:0.18, G:0.19, T:0.28
Consensus pattern (22 bp):
ATATGTGAACCCTAGGAGATTA
Found at i:92548069 original size:33 final size:33
Alignment explanation
Indices: 92548025--92548090 Score: 114
Period size: 33 Copynumber: 2.0 Consensus size: 33
92548015 TGGAATTCGG
* *
92548025 TTGTATGCAGTTTAGTCAAGGATTTTTTATCCA
1 TTGTATACAGTTTAGTCAAGGAGTTTTTATCCA
92548058 TTGTATACAGTTTAGTCAAGGAGTTTTTATCCA
1 TTGTATACAGTTTAGTCAAGGAGTTTTTATCCA
92548091 GTCTTTGTCA
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
33 31 1.00
ACGTcount: A:0.26, C:0.12, G:0.18, T:0.44
Consensus pattern (33 bp):
TTGTATACAGTTTAGTCAAGGAGTTTTTATCCA
Found at i:92555918 original size:50 final size:49
Alignment explanation
Indices: 92555822--92556134 Score: 315
Period size: 50 Copynumber: 6.3 Consensus size: 49
92555812 TTGGTCGCAT
* * * * *
92555822 GTGCAGGCTACTATGCGTACCCGATAACTTCGATCACGTGTGTAGTACTAA
1 GTGCAGGCTACTACGTGTATCAGATAA-TT-GGTCACGTGTGTAGTACTAA
* ** *
92555873 GTGCAGGCTACTACATGTATCAGATGGTTAGGTCACGCGTGTAGTACTAA
1 GTGCAGGCTACTACGTGTATCAGATAATT-GGTCACGTGTGTAGTACTAA
* * * *
92555923 GTGCAGGCTACTACGTGTACCGGATAATTGGTCGCATGTGTAGTACTAA
1 GTGCAGGCTACTACGTGTATCAGATAATTGGTCACGTGTGTAGTACTAA
* * * * * *
92555972 GTGCAGGCTACTATGCGTACCCA-ATAACTTCGATCATGTGTTTAGTACTAA
1 GTGCAGGCTACTACGTGTA-TCAGATAA-TT-GGTCACGTGTGTAGTACTAA
* **
92556023 GTGCAAGCTACTACGTGTATCAGATGGTTAGGTCACGTGTGTAGTACTAA
1 GTGCAGGCTACTACGTGTATCAGATAATT-GGTCACGTGTGTAGTACTAA
* * *
92556073 GTGTAGGCTACTACGTGTATCGGATAATTGGT-AGCATGTGTAGTACTAA
1 GTGCAGGCTACTACGTGTATCAGATAATTGGTCA-CGTGTGTAGTACTAA
92556122 GTGCAGGCTACTA
1 GTGCAGGCTACTA
92556135 TGCGTACTAG
Statistics
Matches: 214, Mismatches: 43, Indels: 12
0.80 0.16 0.04
Matches are distributed among these distances:
48 1 0.00
49 67 0.31
50 93 0.43
51 53 0.25
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.29
Consensus pattern (49 bp):
GTGCAGGCTACTACGTGTATCAGATAATTGGTCACGTGTGTAGTACTAA
Found at i:92556097 original size:150 final size:150
Alignment explanation
Indices: 92555822--92556141 Score: 559
Period size: 150 Copynumber: 2.1 Consensus size: 150
92555812 TTGGTCGCAT
* *
92555822 GTGCAGGCTACTATGCGTACCCGATAACTTCGATCACGTGTGTAGTACTAAGTGCAGGCTACTAC
1 GTGCAGGCTACTATGCGTACCCAATAACTTCGATCACGTGTGTAGTACTAAGTGCAAGCTACTAC
92555887 ATGTATCAGATGGTTAGGTCACGCGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT
66 ATGTATCAGATGGTTAGGTCACGCGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT
*
92555952 GGTCGCATGTGTAGTACTAA
131 GGTAGCATGTGTAGTACTAA
* *
92555972 GTGCAGGCTACTATGCGTACCCAATAACTTCGATCATGTGTTTAGTACTAAGTGCAAGCTACTAC
1 GTGCAGGCTACTATGCGTACCCAATAACTTCGATCACGTGTGTAGTACTAAGTGCAAGCTACTAC
* * * *
92556037 GTGTATCAGATGGTTAGGTCACGTGTGTAGTACTAAGTGTAGGCTACTACGTGTATCGGATAATT
66 ATGTATCAGATGGTTAGGTCACGCGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT
92556102 GGTAGCATGTGTAGTACTAA
131 GGTAGCATGTGTAGTACTAA
92556122 GTGCAGGCTACTATGCGTAC
1 GTGCAGGCTACTATGCGTAC
92556142 TAGATAGCCT
Statistics
Matches: 161, Mismatches: 9, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
150 161 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.29
Consensus pattern (150 bp):
GTGCAGGCTACTATGCGTACCCAATAACTTCGATCACGTGTGTAGTACTAAGTGCAAGCTACTAC
ATGTATCAGATGGTTAGGTCACGCGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT
GGTAGCATGTGTAGTACTAA
Found at i:92557390 original size:27 final size:27
Alignment explanation
Indices: 92557360--92557514 Score: 145
Period size: 27 Copynumber: 5.7 Consensus size: 27
92557350 TTAGTTTACC
92557360 AAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* * *
92557387 AAATTACTAAAATACCCTTGGTTTATA
1 AAATTACCAAAATACCCCTGGTTTGTA
* *
92557414 AAATCACCAAAATAACCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
** *
92557441 AAATTA-CATAAATA-CCCTCATACTGTA
1 AAATTACCA-AAATACCCCTGGT-TTGTA
** **
92557468 AAATTATTAAAATA-CCCTCGACTTGTA
1 AAATTACCAAAATACCCCT-GGTTTGTA
*
92557495 AAATTACCAAAGTACCCCTG
1 AAATTACCAAAATACCCCTG
92557515 ATTTACAGAA
Statistics
Matches: 104, Mismatches: 19, Indels: 10
0.78 0.14 0.08
Matches are distributed among these distances:
26 7 0.07
27 91 0.88
28 6 0.06
ACGTcount: A:0.41, C:0.21, G:0.08, T:0.30
Consensus pattern (27 bp):
AAATTACCAAAATACCCCTGGTTTGTA
Found at i:92557564 original size:27 final size:27
Alignment explanation
Indices: 92557477--92557566 Score: 85
Period size: 27 Copynumber: 3.3 Consensus size: 27
92557467 AAAATTATTA
* **
92557477 AAATACCCTCGACTTGTAAAATTACC-
1 AAATACCCTCGATTTACAAAATTACCG
*
92557503 AAAGTACCC-CTGATTTACAGAATTACCG
1 AAA-TACCCTC-GATTTACAAAATTACCG
***
92557531 TTTTACCCTCGATTTACAAAATTACCG
1 AAATACCCTCGATTTACAAAATTACCG
92557558 AAATACCCT
1 AAATACCCT
92557567 TGTAGGGTAG
Statistics
Matches: 49, Mismatches: 11, Indels: 7
0.73 0.16 0.10
Matches are distributed among these distances:
26 4 0.08
27 44 0.90
28 1 0.02
ACGTcount: A:0.36, C:0.27, G:0.09, T:0.29
Consensus pattern (27 bp):
AAATACCCTCGATTTACAAAATTACCG
Found at i:92557650 original size:6 final size:6
Alignment explanation
Indices: 92557641--92557808 Score: 103
Period size: 6 Copynumber: 27.3 Consensus size: 6
92557631 TTGCATTCAC
*
92557641 ATTCTG ATTCTG ATTCTG -TTACCTG ATACTG ATTCTG ATTCTG -TTACCTG
1 ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG ATT--CTG
* * * * *
92557691 ATACTG ATTCTG ATTCTG -TTACCTA ATTCTG ATTTTG ATTTTG ATTTTG
1 ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG
* * * * * *
92557740 ATTTTG ATTTTG ATTCT- ATCACCTA ATTCTG ATTCTG GTTCTG ATTCTC
1 ATTCTG ATTCTG ATTCTG AT--TCTG ATTCTG ATTCTG ATTCTG ATTCTG
*
92557789 ATTTTG ATTCT- AGTTCTG AT
1 ATTCTG ATTCTG A-TTCTG AT
92557809 AATGTTTCTT
Statistics
Matches: 131, Mismatches: 17, Indels: 28
0.74 0.10 0.16
Matches are distributed among these distances:
5 9 0.07
6 105 0.80
7 11 0.08
8 6 0.05
ACGTcount: A:0.19, C:0.16, G:0.14, T:0.51
Consensus pattern (6 bp):
ATTCTG
Found at i:92557691 original size:19 final size:18
Alignment explanation
Indices: 92557644--92557724 Score: 57
Period size: 19 Copynumber: 4.7 Consensus size: 18
92557634 CATTCACATT
92557644 CTGATTCTGATTCTGTTA
1 CTGATTCTGATTCTGTTA
*
92557662 CCTGATACTGATTCTGATT-
1 -CTGATTCTGATTCTG-TTA
* *
92557681 CTG--T-T-A-CCTGATA
1 CTGATTCTGATTCTGTTA
92557694 CTGATTCTGATTCTGTTA
1 CTGATTCTGATTCTGTTA
*
92557712 CCTAATTCTGATT
1 -CTGATTCTGATT
92557725 TTGATTTTGA
Statistics
Matches: 47, Mismatches: 7, Indels: 16
0.67 0.10 0.23
Matches are distributed among these distances:
12 1 0.02
13 6 0.13
14 1 0.02
15 2 0.04
16 1 0.02
17 1 0.02
18 8 0.17
19 25 0.53
20 2 0.04
ACGTcount: A:0.20, C:0.20, G:0.15, T:0.46
Consensus pattern (18 bp):
CTGATTCTGATTCTGTTA
Found at i:92557764 original size:49 final size:49
Alignment explanation
Indices: 92557635--92557799 Score: 152
Period size: 49 Copynumber: 3.3 Consensus size: 49
92557625 ATGGGTTTGC
* * * * * *
92557635 ATTCACATTCTGATTCTGATTCTGTTACCTGATACTGATTCTGATTCTG
1 ATTCTCATTTTGATTCTGATTCTATCACCTAATTCTGATTCTGATTCTG
* ** * * * *
92557684 -TTACCTGATACTGATTCTGATTCTGTTACCTAATTCTGATTTTGATTTTG
1 ATT--CTCATTTTGATTCTGATTCTATCACCTAATTCTGATTCTGATTCTG
* * * *
92557734 ATTTTGATTTTGATTTTGATTCTATCACCTAATTCTGATTCTGGTTCTG
1 ATTCTCATTTTGATTCTGATTCTATCACCTAATTCTGATTCTGATTCTG
92557783 ATTCTCATTTTGATTCT
1 ATTCTCATTTTGATTCT
92557800 AGTTCTGATA
Statistics
Matches: 94, Mismatches: 19, Indels: 6
0.79 0.16 0.05
Matches are distributed among these distances:
48 2 0.02
49 51 0.54
50 39 0.41
51 2 0.02
ACGTcount: A:0.19, C:0.17, G:0.13, T:0.50
Consensus pattern (49 bp):
ATTCTCATTTTGATTCTGATTCTATCACCTAATTCTGATTCTGATTCTG
Found at i:92557781 original size:25 final size:25
Alignment explanation
Indices: 92557641--92557782 Score: 153
Period size: 25 Copynumber: 5.7 Consensus size: 25
92557631 TTGCATTCAC
92557641 ATTCTGATTCTGATTCTGTTACCTG
1 ATTCTGATTCTGATTCTGTTACCTG
*
92557666 ATACTGATTCTGATTCTGTTACCTG
1 ATTCTGATTCTGATTCTGTTACCTG
* *
92557691 ATACTGATTCTGATTCTGTTACCTA
1 ATTCTGATTCTGATTCTGTTACCTG
* * *
92557716 ATTCTGATTTTGATTTTGATT--TTG
1 ATTCTGATTCTGATTCTG-TTACCTG
* * * * *
92557740 ATTTTGATTTTGATTCTATCACCTA
1 ATTCTGATTCTGATTCTGTTACCTG
*
92557765 ATTCTGATTCTGGTTCTG
1 ATTCTGATTCTGATTCTG
92557783 ATTCTCATTT
Statistics
Matches: 97, Mismatches: 17, Indels: 6
0.81 0.14 0.05
Matches are distributed among these distances:
23 1 0.01
24 16 0.16
25 78 0.80
26 2 0.02
ACGTcount: A:0.19, C:0.16, G:0.15, T:0.50
Consensus pattern (25 bp):
ATTCTGATTCTGATTCTGTTACCTG
Found at i:92558091 original size:15 final size:15
Alignment explanation
Indices: 92558071--92558106 Score: 63
Period size: 15 Copynumber: 2.4 Consensus size: 15
92558061 ATACTGTTTA
92558071 TGTTACAGTTTTGAT
1 TGTTACAGTTTTGAT
92558086 TGTTACAGTTTTGAT
1 TGTTACAGTTTTGAT
*
92558101 TATTAC
1 TGTTAC
92558107 TTTTAAATGT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 20 1.00
ACGTcount: A:0.22, C:0.08, G:0.17, T:0.53
Consensus pattern (15 bp):
TGTTACAGTTTTGAT
Found at i:92570719 original size:31 final size:31
Alignment explanation
Indices: 92570676--92570738 Score: 108
Period size: 31 Copynumber: 2.0 Consensus size: 31
92570666 ATATACCTTT
*
92570676 TTAGCTTTCCTAATTACTAATTTGGCAGACA
1 TTAGATTTCCTAATTACTAATTTGGCAGACA
*
92570707 TTAGATTTCCTAATTACTAATTTGGTAGACA
1 TTAGATTTCCTAATTACTAATTTGGCAGACA
92570738 T
1 T
92570739 ATTTCCTTTT
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.30, C:0.16, G:0.13, T:0.41
Consensus pattern (31 bp):
TTAGATTTCCTAATTACTAATTTGGCAGACA
Found at i:92581680 original size:20 final size:20
Alignment explanation
Indices: 92581657--92581695 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
92581647 TAAACATGGT
*
92581657 ATGTATTATATGCACATGAC
1 ATGTATGATATGCACATGAC
92581677 ATGTATGATATGCACATGA
1 ATGTATGATATGCACATGA
92581696 TGTATTCATA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.36, C:0.13, G:0.18, T:0.33
Consensus pattern (20 bp):
ATGTATGATATGCACATGAC
Found at i:92581775 original size:25 final size:24
Alignment explanation
Indices: 92581745--92581864 Score: 174
Period size: 23 Copynumber: 5.0 Consensus size: 24
92581735 GGAGGAAGTG
92581745 TAAAAGGGCTTATGCCCCAGTTAT
1 TAAAAGGGCTTATGCCCCAGTTAT
*
92581769 GATAAAGGGCTTATGCCCCAGTTAT
1 TA-AAAGGGCTTATGCCCCAGTTAT
92581794 TAAAAGGGCTT-TGCCCCAGTTAT
1 TAAAAGGGCTTATGCCCCAGTTAT
92581817 TAAAAGGGCTT-TGCCCCAGTTAT
1 TAAAAGGGCTTATGCCCCAGTTAT
*
92581840 TAAAAGAGGC-TAGGCCTCCAGTTAT
1 TAAAAG-GGCTTATGCC-CCAGTTAT
92581865 ATGATAAAGC
Statistics
Matches: 89, Mismatches: 3, Indels: 7
0.90 0.03 0.07
Matches are distributed among these distances:
23 42 0.47
24 16 0.18
25 31 0.35
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (24 bp):
TAAAAGGGCTTATGCCCCAGTTAT
Found at i:92582093 original size:31 final size:31
Alignment explanation
Indices: 92582058--92582120 Score: 108
Period size: 31 Copynumber: 2.0 Consensus size: 31
92582048 CATTTATAGT
92582058 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
**
92582089 AAAGGCTTCGGCCCAGTGTTATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
92582120 A
1 A
92582121 GTGTGAAACG
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.37, C:0.16, G:0.24, T:0.24
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:92589788 original size:11 final size:11
Alignment explanation
Indices: 92589752--92589807 Score: 57
Period size: 11 Copynumber: 5.5 Consensus size: 11
92589742 CATGGTATGT
92589752 ATGATATGCAC
1 ATGATATGCAC
* *
92589763 ATGACATG--T
1 ATGATATGCAC
92589772 ATGATATGCAC
1 ATGATATGCAC
*
92589783 ATGATATG--T
1 ATGATATGCAC
92589792 ATGATATGCAC
1 ATGATATGCAC
92589803 ATGAT
1 ATGAT
92589808 GTATTCATAA
Statistics
Matches: 35, Mismatches: 6, Indels: 8
0.71 0.12 0.16
Matches are distributed among these distances:
9 15 0.43
11 20 0.57
ACGTcount: A:0.36, C:0.12, G:0.20, T:0.32
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:92589807 original size:20 final size:20
Alignment explanation
Indices: 92589741--92589807 Score: 116
Period size: 20 Copynumber: 3.4 Consensus size: 20
92589731 ATTTTGATAA
*
92589741 ACATGGTATGTATGATATGC
1 ACATGATATGTATGATATGC
*
92589761 ACATGACATGTATGATATGC
1 ACATGATATGTATGATATGC
92589781 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
92589801 ACATGAT
1 ACATGAT
92589808 GTATTCATAA
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 44 1.00
ACGTcount: A:0.34, C:0.12, G:0.21, T:0.33
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:92589948 original size:23 final size:24
Alignment explanation
Indices: 92589856--92589999 Score: 213
Period size: 23 Copynumber: 6.0 Consensus size: 24
92589846 GGAGGAAGTG
92589856 TAAAAGGGCTTATGCCCCAGTTAT
1 TAAAAGGGCTTATGCCCCAGTTAT
*
92589880 GATAAAGGGCTTATGCCCCAGTTAT
1 TA-AAAGGGCTTATGCCCCAGTTAT
*
92589905 TAAAAGGGCTTATGCCTCAGTTAT
1 TAAAAGGGCTTATGCCCCAGTTAT
92589929 TAAAAGGGCTT-TGCCCCAGTTAT
1 TAAAAGGGCTTATGCCCCAGTTAT
92589952 TAAAAGGGCTT-TGCCCCAGTTAT
1 TAAAAGGGCTTATGCCCCAGTTAT
*
92589975 TAAAAGAGGC-TAGGCCTCCAGTTAT
1 TAAAAG-GGCTTATGCC-CCAGTTAT
92590000 ATGATAAAGC
Statistics
Matches: 111, Mismatches: 5, Indels: 7
0.90 0.04 0.06
Matches are distributed among these distances:
23 41 0.37
24 39 0.35
25 31 0.28
ACGTcount: A:0.28, C:0.20, G:0.22, T:0.29
Consensus pattern (24 bp):
TAAAAGGGCTTATGCCCCAGTTAT
Found at i:92590228 original size:31 final size:31
Alignment explanation
Indices: 92590193--92590255 Score: 99
Period size: 31 Copynumber: 2.0 Consensus size: 31
92590183 CGTTTATAGT
*
92590193 AAAGGCTTTGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
**
92590224 AAAGGCTTCGGCCCAGTGTTATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
92590255 A
1 A
92590256 GTGTGAAACG
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.37, C:0.14, G:0.24, T:0.25
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:92602674 original size:16 final size:18
Alignment explanation
Indices: 92602643--92602679 Score: 51
Period size: 17 Copynumber: 2.2 Consensus size: 18
92602633 GTTTAGTTCT
92602643 AATAGCTAAAGGAATT-A
1 AATAGCTAAAGGAATTCA
*
92602660 AATAGCT-ATGGAATTCA
1 AATAGCTAAAGGAATTCA
92602677 AAT
1 AAT
92602680 TTTGAGGTCC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
16 7 0.39
17 11 0.61
ACGTcount: A:0.49, C:0.08, G:0.16, T:0.27
Consensus pattern (18 bp):
AATAGCTAAAGGAATTCA
Found at i:92603239 original size:14 final size:14
Alignment explanation
Indices: 92603220--92603252 Score: 66
Period size: 14 Copynumber: 2.4 Consensus size: 14
92603210 CTTGGAATAA
92603220 GAATTAAATTATAT
1 GAATTAAATTATAT
92603234 GAATTAAATTATAT
1 GAATTAAATTATAT
92603248 GAATT
1 GAATT
92603253 TCATTTTCTC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.48, C:0.00, G:0.09, T:0.42
Consensus pattern (14 bp):
GAATTAAATTATAT
Found at i:92613677 original size:46 final size:46
Alignment explanation
Indices: 92613529--92613693 Score: 206
Period size: 47 Copynumber: 3.5 Consensus size: 46
92613519 AGTGCGAATA
*
92613529 TTACCTTGATTTGGCTACGAGCCATGCTATAGGTATTCAGAGAGGAG
1 TTACCTTGATTTGGCTACGGGCCATGCTATAGGTATTCAG-GAGGAG
* * * * **
92613576 TTACCTTGATTTGGTTACGGGCCATGGTATAGGTACTCTGGTATAAG
1 TTACCTTGATTTGGCTACGGGCCATGCTATAGGTATTCAGG-AGGAG
* *
92613623 TTAACTTGATTTGTCTACGGGCCATGCT-TAGGTATTCAGTGAGGAG
1 TTACCTTGATTTGGCTACGGGCCATGCTATAGGTATTCAG-GAGGAG
*
92613669 TTACCTTGATTTGGGTACGGGCCAT
1 TTACCTTGATTTGGCTACGGGCCAT
92613694 CTTGATTTGG
Statistics
Matches: 98, Mismatches: 18, Indels: 5
0.81 0.15 0.04
Matches are distributed among these distances:
46 35 0.36
47 63 0.64
ACGTcount: A:0.22, C:0.16, G:0.28, T:0.34
Consensus pattern (46 bp):
TTACCTTGATTTGGCTACGGGCCATGCTATAGGTATTCAGGAGGAG
Found at i:92613699 original size:21 final size:21
Alignment explanation
Indices: 92613673--92613714 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
92613663 GAGGAGTTAC
* *
92613673 CTTGATTTGGGTACGGGCCAT
1 CTTGATTTGGCTACGAGCCAT
92613694 CTTGATTTGGCTACGAGCCAT
1 CTTGATTTGGCTACGAGCCAT
92613715 GGTGTAGCTA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.17, C:0.21, G:0.29, T:0.33
Consensus pattern (21 bp):
CTTGATTTGGCTACGAGCCAT
Found at i:92616907 original size:39 final size:39
Alignment explanation
Indices: 92616782--92616964 Score: 201
Period size: 40 Copynumber: 4.6 Consensus size: 39
92616772 GCTACTTGTT
* *
92616782 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGATT-TAGTAACTCGCA
*
92616822 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCC-GATTTAGTAACTCGCA
* *
92616862 CCAATGCCTTCGGG-CTTAGCCCAGAATTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCC-GATTTAGTAACTCGCA
* * * * *
92616901 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAG-CCCGATTTAGTAAC-TCGCA
92616942 CAAA-GCCTTCGGGACTTAGCCCG
1 CAAATGCCTTCGGGACTTAGCCCG
92616965 GACATCATTC
Statistics
Matches: 122, Mismatches: 15, Indels: 13
0.81 0.10 0.09
Matches are distributed among these distances:
38 2 0.02
39 35 0.29
40 69 0.57
41 16 0.13
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (39 bp):
CAAATGCCTTCGGGACTTAGCCCGATTTAGTAACTCGCA
Found at i:92616926 original size:79 final size:80
Alignment explanation
Indices: 92616784--92616964 Score: 217
Period size: 79 Copynumber: 2.3 Consensus size: 80
92616774 TACTTGTTCA
* **
92616784 AATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
1 AATGCCTTCGGGACTTAGCCCGAATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
* *
92616849 TTAGTAAC-TCGCACC
66 ATAGTAACTTAGCA-C
**
92616864 AATGCCTTCGGG-CTTAGCCCAGAAT-TAGTAACTCGCACAAATGCCTTC-GGATCTTAGTCCGG
1 AATGCCTTCGGGACTTAGCCC-GAATATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGG
* *
92616926 ATATGGTCACTTAGCAC
64 ATATAGTAACTTAGCAC
*
92616943 AAAGCCTTCGGGACTTAGCCCG
1 AATGCCTTCGGGACTTAGCCCG
92616965 GACATCATTC
Statistics
Matches: 87, Mismatches: 10, Indels: 9
0.82 0.09 0.08
Matches are distributed among these distances:
78 3 0.03
79 58 0.67
80 26 0.30
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.24
Consensus pattern (80 bp):
AATGCCTTCGGGACTTAGCCCGAATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
ATAGTAACTTAGCAC
Found at i:92618262 original size:85 final size:85
Alignment explanation
Indices: 92618133--92618311 Score: 358
Period size: 85 Copynumber: 2.1 Consensus size: 85
92618123 TATTTTATTG
92618133 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
1 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
92618198 TAGCCATAACATCTTGTCCA
66 TAGCCATAACATCTTGTCCA
92618218 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
1 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
92618283 TAGCCATAACATCTTGTCCA
66 TAGCCATAACATCTTGTCCA
92618303 CCCATGCTC
1 CCCATGCTC
92618312 ATGGCCGGCC
Statistics
Matches: 94, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
85 94 1.00
ACGTcount: A:0.26, C:0.27, G:0.08, T:0.38
Consensus pattern (85 bp):
CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
TAGCCATAACATCTTGTCCA
Found at i:92624329 original size:13 final size:13
Alignment explanation
Indices: 92624311--92624338 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
92624301 ACAAAATTGG
92624311 AAAGATGATAAAT
1 AAAGATGATAAAT
92624324 AAAGATGATAAAT
1 AAAGATGATAAAT
92624337 AA
1 AA
92624339 TAAAATAAAG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.64, C:0.00, G:0.14, T:0.21
Consensus pattern (13 bp):
AAAGATGATAAAT
Found at i:92626270 original size:50 final size:49
Alignment explanation
Indices: 92626139--92626382 Score: 283
Period size: 49 Copynumber: 4.9 Consensus size: 49
92626129 TAGCCGAAGC
* ** * *
92626139 TATCTGGTACGCACAGTAGCCTGCACTTAGTACTACACATGCGACCAAT
1 TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCAAT
* *
92626188 TATCCGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAAC
1 TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACC-AAT
* * * *
92626238 CATCTGATACACGCAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGT
1 TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGA-CCAA-T
* * * * * *
92626289 TATCAGGTACGCATAGTAG-CTGCACTTAGTACTACACATGCGACCAAG
1 TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCAAT
* *
92626337 AATCTGGTGCACGTAGTAGCCTGCACTTAGTACTACACACGTGACC
1 TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACC
92626383 CCACAATAGC
Statistics
Matches: 161, Mismatches: 30, Indels: 8
0.81 0.15 0.04
Matches are distributed among these distances:
48 14 0.09
49 67 0.42
50 66 0.41
51 14 0.09
ACGTcount: A:0.29, C:0.28, G:0.20, T:0.24
Consensus pattern (49 bp):
TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCAAT
Found at i:92626342 original size:99 final size:99
Alignment explanation
Indices: 92626152--92626382 Score: 313
Period size: 99 Copynumber: 2.3 Consensus size: 99
92626142 CTGGTACGCA
* * * *
92626152 CAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACACGTAGTAGCCTGCACTTA
1 CAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCAGGTACACATAGTAGCCTGCACTTA
* *
92626217 GTACTACACACGTGACCTAACCATCTGATACACG
66 GTACTACACACGCGACCTAACAATCTGATACACG
* *
92626251 CAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGTTATCAGGTACGCATAGTAG-CTGCACT
1 CAGTAGCCTGCACTTAGTACTACACACGTGA-CCAA-TTATCAGGTACACATAGTAGCCTGCACT
* * * *
92626315 TAGTACTACACATGCGACC-AAGAATCTGGTGCACG
64 TAGTACTACACACGCGACCTAACAATCTGATACACG
*
92626350 TAGTAGCCTGCACTTAGTACTACACACGTGACC
1 CAGTAGCCTGCACTTAGTACTACACACGTGACC
92626383 CCACAATAGC
Statistics
Matches: 116, Mismatches: 14, Indels: 5
0.86 0.10 0.04
Matches are distributed among these distances:
98 1 0.01
99 71 0.61
100 27 0.23
101 17 0.15
ACGTcount: A:0.29, C:0.28, G:0.19, T:0.23
Consensus pattern (99 bp):
CAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCAGGTACACATAGTAGCCTGCACTTA
GTACTACACACGCGACCTAACAATCTGATACACG
Found at i:92627064 original size:30 final size:30
Alignment explanation
Indices: 92627030--92627089 Score: 84
Period size: 30 Copynumber: 2.0 Consensus size: 30
92627020 CTTTAATACG
*
92627030 AACTTTGGAAAAATTACCATTTTGCCCCTA
1 AACTTTGGAAAAATTACAATTTTGCCCCTA
* * *
92627060 AACTTTTGCATAATTACAATTTTGCCCCTA
1 AACTTTGGAAAAATTACAATTTTGCCCCTA
92627090 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.32, C:0.23, G:0.08, T:0.37
Consensus pattern (30 bp):
AACTTTGGAAAAATTACAATTTTGCCCCTA
Found at i:92628418 original size:26 final size:26
Alignment explanation
Indices: 92628382--92628433 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
92628372 TAGGGTTAGC
92628382 CACCTGAAAGCTTTCACTGTCATTCA
1 CACCTGAAAGCTTTCACTGTCATTCA
92628408 CACCTGAAAGCTTTCACTGTCATTCA
1 CACCTGAAAGCTTTCACTGTCATTCA
92628434 TCCTTTCTGA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.27, C:0.31, G:0.12, T:0.31
Consensus pattern (26 bp):
CACCTGAAAGCTTTCACTGTCATTCA
Found at i:92628518 original size:21 final size:22
Alignment explanation
Indices: 92628489--92628541 Score: 58
Period size: 21 Copynumber: 2.5 Consensus size: 22
92628479 CTTGGTGCCG
92628489 ATTTCTTCTTCC-TCTCTTTTT-C
1 ATTT-TTCTTCCTTC-CTTTTTGC
*
92628511 ATTTTTCTTTCTTCCTTTTTGC
1 ATTTTTCTTCCTTCCTTTTTGC
92628533 -TTTTTCTTC
1 ATTTTTCTTC
92628542 TAGCTGAAAC
Statistics
Matches: 27, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
21 20 0.74
22 7 0.26
ACGTcount: A:0.04, C:0.26, G:0.02, T:0.68
Consensus pattern (22 bp):
ATTTTTCTTCCTTCCTTTTTGC
Found at i:92629967 original size:64 final size:65
Alignment explanation
Indices: 92629849--92629978 Score: 235
Period size: 64 Copynumber: 2.0 Consensus size: 65
92629839 CCCCTAGGGT
*
92629849 TAAGGTTGACCTGAATGCATGTTTGACTGTTATTATTTACTGCATGCCATGTTATTATTATCTGA
1 TAAGGTTGACCTGAATGCATGTTTGACTGTTACTATTTACTGCATGCCATGTTATTATTATCTGA
*
92629914 TAAGGTTGACCTGAATGCATGTTTGA-TGTTACTATTTACTGCATGTCATGTTATTATTATCTGA
1 TAAGGTTGACCTGAATGCATGTTTGACTGTTACTATTTACTGCATGCCATGTTATTATTATCTGA
92629978 T
1 T
92629979 GCATGGGACT
Statistics
Matches: 63, Mismatches: 2, Indels: 1
0.95 0.03 0.02
Matches are distributed among these distances:
64 37 0.59
65 26 0.41
ACGTcount: A:0.25, C:0.13, G:0.18, T:0.44
Consensus pattern (65 bp):
TAAGGTTGACCTGAATGCATGTTTGACTGTTACTATTTACTGCATGCCATGTTATTATTATCTGA
Found at i:92633550 original size:48 final size:48
Alignment explanation
Indices: 92633494--92633762 Score: 217
Period size: 48 Copynumber: 5.6 Consensus size: 48
92633484 GGGTGAACTA
**
92633494 CCGATGCCATGTTTCAAACATGGTCTTACATTGGCTTATATGTCGAGG
1 CCGATGCCATGTCCCAAACATGGTCTTACATTGGCTTATATGTCGAGG
* * * * * * *
92633542 CCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCT-TGTCTCAATG
1 CCGATGCCATGTCCCAAACATGGTCTTACATTGGCT-TATATGTCGAGG
* * * * *
92633590 CTGATGCCATGTCCTAGACATGGTCTTATATTGGCTTACATGTCGAGG
1 CCGATGCCATGTCCCAAACATGGTCTTACATTGGCTTATATGTCGAGG
* * * ** * * *
92633638 CCGATGCCATGTCCCAAACATGGTCTTATACTAGCTCT-CGTCTCAATG
1 CCGATGCCATGTCCCAAACATGGTCTTACATTGGCT-TATATGTCGAGG
* * *
92633686 CCGATGTCATATCCCAGACATGGTCTTACATTGGCTCTCATAATGT---GG
1 CCGATGCCATGTCCCAAACATGGTCTTACATTGGCT-T-AT-ATGTCGAGG
*
92633734 CCGATGCCATGTCCCAGA-ATGGTCTTACA
1 CCGATGCCATGTCCCAAACATGGTCTTACA
92633763 CTAGCACACA
Statistics
Matches: 175, Mismatches: 40, Indels: 13
0.77 0.18 0.06
Matches are distributed among these distances:
47 12 0.07
48 159 0.91
49 2 0.01
51 2 0.01
ACGTcount: A:0.22, C:0.26, G:0.21, T:0.30
Consensus pattern (48 bp):
CCGATGCCATGTCCCAAACATGGTCTTACATTGGCTTATATGTCGAGG
Found at i:92633660 original size:96 final size:96
Alignment explanation
Indices: 92633511--92633767 Score: 376
Period size: 96 Copynumber: 2.7 Consensus size: 96
92633501 CATGTTTCAA
*
92633511 ACATGGTCTTACATTGGCTTATATGTCGAGGCCGATGCCATGTCCCAGACATGGTCTTACACTAG
1 ACATGGTCTTACATTGGCTTACATGTCGAGGCCGATGCCATGTCCCAGACATGGTCTTACACTAG
* * * *
92633576 CTCTTGTCTCAATGCTGATGCCATGTCCTAG
66 CTCTCGTCTCAATGCCGATGCCATATCCCAG
* * *
92633607 ACATGGTCTTATATTGGCTTACATGTCGAGGCCGATGCCATGTCCCAAACATGGTCTTATACTAG
1 ACATGGTCTTACATTGGCTTACATGTCGAGGCCGATGCCATGTCCCAGACATGGTCTTACACTAG
*
92633672 CTCTCGTCTCAATGCCGATGTCATATCCCAG
66 CTCTCGTCTCAATGCCGATGCCATATCCCAG
* *
92633703 ACATGGTCTTACATTGGCTCT-CATAAT-GTGGCCGATGCCATGTCCCAGA-ATGGTCTTACACT
1 ACATGGTCTTACATTGGCT-TACAT-GTCGAGGCCGATGCCATGTCCCAGACATGGTCTTACACT
92633765 AGC
64 AGC
92633768 ACACATATCA
Statistics
Matches: 145, Mismatches: 14, Indels: 5
0.88 0.09 0.03
Matches are distributed among these distances:
95 15 0.10
96 128 0.88
97 2 0.01
ACGTcount: A:0.22, C:0.26, G:0.21, T:0.30
Consensus pattern (96 bp):
ACATGGTCTTACATTGGCTTACATGTCGAGGCCGATGCCATGTCCCAGACATGGTCTTACACTAG
CTCTCGTCTCAATGCCGATGCCATATCCCAG
Found at i:92638941 original size:49 final size:47
Alignment explanation
Indices: 92638810--92639261 Score: 746
Period size: 47 Copynumber: 9.6 Consensus size: 47
92638800 TATTTGAATA
92638810 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
92638857 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
92638904 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG
92638953 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
92639002 AATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
92639049 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
92639096 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
92639143 AATGTGAAAGTG--TATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* * * * *
92639188 AATGTGAAAGTGTATATATGTGATAGGGCCGAGTGGCCAACGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
92639235 GATGTGAAAGTGTATAAATGTGATAAG
1 AATGTGAAAGTGTATATATGTGATAAG
92639262 TCCGAAGGGC
Statistics
Matches: 387, Mismatches: 14, Indels: 8
0.95 0.03 0.02
Matches are distributed among these distances:
45 45 0.12
47 248 0.64
49 94 0.24
ACGTcount: A:0.33, C:0.08, G:0.30, T:0.29
Consensus pattern (47 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
Found at i:92639141 original size:22 final size:22
Alignment explanation
Indices: 92639113--92639186 Score: 62
Period size: 22 Copynumber: 3.3 Consensus size: 22
92639103 AAGTGTATAT
92639113 ATGTGATAAGGCCTAATGGCCG
1 ATGTGATAAGGCCTAATGGCCG
* * ***
92639135 ATGTGATGAATG--TGAAAGTGTAT
1 ATGTGAT-AAGGCCT-AATG-GCCG
92639158 ATGTGATAAGGCCTAATGGCCG
1 ATGTGATAAGGCCTAATGGCCG
92639180 ATGTGAT
1 ATGTGAT
92639187 GAATGTGAAA
Statistics
Matches: 37, Mismatches: 10, Indels: 10
0.65 0.18 0.18
Matches are distributed among these distances:
21 1 0.03
22 21 0.57
23 14 0.38
24 1 0.03
ACGTcount: A:0.30, C:0.11, G:0.31, T:0.28
Consensus pattern (22 bp):
ATGTGATAAGGCCTAATGGCCG
Found at i:92641253 original size:79 final size:81
Alignment explanation
Indices: 92641117--92641299 Score: 232
Period size: 79 Copynumber: 2.3 Consensus size: 81
92641107 TCGAATGATG
* *
92641117 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
92641181 TGTGCGAGTTACTA-A
66 TGTGCGAGTTACTATA
* * * **
92641196 TTCCGGGCTAAG-CCCGAAGGCATTGGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
92641258 TTTGTGCGAGTTACTATA
64 TTTGTGCGAGTTACTATA
* *
92641276 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
92641300 TGAACGAGTA
Statistics
Matches: 90, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 1 0.01
79 59 0.66
80 30 0.33
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
TGTGCGAGTTACTATA
Found at i:92641315 original size:40 final size:40
Alignment explanation
Indices: 92641118--92641301 Score: 216
Period size: 40 Copynumber: 4.6 Consensus size: 40
92641108 CGAATGATGT
* * * *
92641118 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA
* *
92641158 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTA-ATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-A
*
92641198 CCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTA-AA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
92641236 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
92641277 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
92641302 AACGAGTAGC
Statistics
Matches: 126, Mismatches: 11, Indels: 14
0.83 0.07 0.09
Matches are distributed among these distances:
39 35 0.28
40 81 0.64
41 10 0.08
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:92641323 original size:79 final size:79
Alignment explanation
Indices: 92641170--92641334 Score: 210
Period size: 79 Copynumber: 2.1 Consensus size: 79
92641160 GGACTAAGAT
* **
92641170 CCGAAGGCATTTGTGCGAGTTACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
*
92641235 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* *
92641249 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCATTTGTGCGAGTTACTAAT-ACCGGGCTAAG-CCCGAAGGCATTGGAACGAGTTA-C
* *
92641312 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
92641328 CCGAAGG
1 CCGAAGG
92641335 TACGTGATTC
Statistics
Matches: 75, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
78 2 0.03
79 49 0.65
80 24 0.32
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:92649399 original size:39 final size:39
Alignment explanation
Indices: 92649281--92649458 Score: 179
Period size: 40 Copynumber: 4.6 Consensus size: 39
92649271 TCGAACGATG
* * * * *
92649281 TCCGGGCTAAGTCCCGAAGGC-TTGCGCTAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTGTGCGAGTTACTAAA
* *
92649319 TCCGGACTAAGAT--CGAA-GCATTGTGCGAGTTACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTGTGCGAGTTACTAAA
92649356 TCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATT-GTGCGAGTTACTAAA
* *
92649395 TCCGGGTTAAGTCCCGAATGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCA-TTGTGCGAGTTACTA-AA
* *
92649436 -CCAGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
92649459 TGAACGAGTA
Statistics
Matches: 116, Mismatches: 15, Indels: 17
0.78 0.10 0.11
Matches are distributed among these distances:
36 2 0.02
37 29 0.25
38 15 0.13
39 27 0.23
40 39 0.34
41 4 0.03
ACGTcount: A:0.25, C:0.24, G:0.27, T:0.25
Consensus pattern (39 bp):
TCCGGGCTAAGTCCCGAAGGCATTGTGCGAGTTACTAAA
Found at i:92649482 original size:79 final size:77
Alignment explanation
Indices: 92649332--92649492 Score: 175
Period size: 79 Copynumber: 2.1 Consensus size: 77
92649322 GGACTAAGAT
* * **
92649332 CGAAGCATTGTGCGAGTTACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAAATC
1 CGAAGCATTGTGCGAGTTACTAATACCAGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAAATC
92649397 CGGGTTAAGTCC
66 CGGGTTAAGTCC
* *
92649409 CGAATGCATTTGTGCGAGTTACT-ATAACCAGGCTATGTCCCGAAGGCATTTGAACGAG-TAGCT
1 CGAA-GCA-TTGTGCGAGTTACTAAT-ACCAGGCTAAG-CCCGAAGGCATTGGAACGAGTTA-CT
* * *
92649472 ATATCC-GGTTAAATTC
61 AAATCCGGGTTAAGTCC
92649488 CGAAG
1 CGAAG
92649493 GTACGTGATT
Statistics
Matches: 70, Mismatches: 9, Indels: 9
0.80 0.10 0.10
Matches are distributed among these distances:
77 4 0.06
78 6 0.09
79 36 0.51
80 24 0.34
ACGTcount: A:0.27, C:0.21, G:0.26, T:0.26
Consensus pattern (77 bp):
CGAAGCATTGTGCGAGTTACTAATACCAGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAAATC
CGGGTTAAGTCC
Found at i:92653212 original size:267 final size:268
Alignment explanation
Indices: 92652731--92653258 Score: 776
Period size: 267 Copynumber: 2.0 Consensus size: 268
92652721 ATTCAAAAAG
** *
92652731 TGCACATACTATTCCCTATAGCATGTCAATAGTATCTTAACAACTTCTCTAAGTTTACAAGAGTA
1 TGCACATACTATTCCCTATAGCATGTCAATAGTATCTTAACAACTTCTCTAAAATTACAAGAGCA
* *
92652796 AAGTTTAAGTAACAATTCAATTTTGTTTCACTGCAATCATATTCACATATTCACTCATTCATTTA
66 AAGTTTAAGTAACAATTAAATTTCGTTTCACTGCAATCATATTCACATATTCACTCATTCATTTA
***
92652861 TGCACATATCCATACACATTGCCACTTGATACTTTTTAGAGTAGCACCCATATATCATAATCATA
131 TGCACATATCCATACACATTGCCACTTGATACTTCCCAGAGTAGCACCCATATATCATAATCATA
* * * *
92652926 ATCAAGGATTCAATAGGCAACCATTCATGTTTTAATCTAAGATTTTGTACTCTCTTGCTCTTATA
196 ATCAAGGATTCAATAGGCAACCATTCATATTTTAATCTAAGAGTTTATAATCTCTTGCTCTTATA
92652991 TTCGACAA
261 TTCGACAA
* * *
92652999 TGCACATACTATTTCCTATAGCATGTCAATTGTATGC-T-ATAACTTCTCTAAAATT-CGAAGAG
1 TGCACATACTATTCCCTATAGCATGTCAATAGTAT-CTTAACAACTTCTCTAAAATTAC-AAGAG
*
92653061 CAAAGTTTAAGTAACAATTAAATTTCGTTTCACTGCAATCATATTCACATATTCACTCTTTCATT
64 CAAAGTTTAAGTAACAATTAAATTTCGTTTCACTGCAATCATATTCACATATTCACTCATTCATT
** * * * * *
92653126 TATGCATGTGTGCATACTCATTGCGACTTGATACTTCCCA-ATGTAGCACCCATATATCATAGTC
129 TATGCACATATCCATACACATTGCCACTTGATACTTCCCAGA-GTAGCACCCATATATCATAATC
* *
92653190 ATAATCAAGGATTCAGTAGGCAACCATTCATATTTTAATGTAAGAGTTTATAATCTCTTGCTCTT
193 ATAATCAAGGATTCAATAGGCAACCATTCATATTTTAATCTAAGAGTTTATAATCTCTTGCTCTT
92653255 ATAT
258 ATAT
92653259 CCGGTTGTCA
Statistics
Matches: 232, Mismatches: 25, Indels: 7
0.88 0.09 0.03
Matches are distributed among these distances:
266 2 0.01
267 195 0.84
268 34 0.15
269 1 0.00
ACGTcount: A:0.32, C:0.20, G:0.11, T:0.37
Consensus pattern (268 bp):
TGCACATACTATTCCCTATAGCATGTCAATAGTATCTTAACAACTTCTCTAAAATTACAAGAGCA
AAGTTTAAGTAACAATTAAATTTCGTTTCACTGCAATCATATTCACATATTCACTCATTCATTTA
TGCACATATCCATACACATTGCCACTTGATACTTCCCAGAGTAGCACCCATATATCATAATCATA
ATCAAGGATTCAATAGGCAACCATTCATATTTTAATCTAAGAGTTTATAATCTCTTGCTCTTATA
TTCGACAA
Found at i:92654366 original size:22 final size:24
Alignment explanation
Indices: 92654311--92654367 Score: 66
Period size: 24 Copynumber: 2.5 Consensus size: 24
92654301 ACCTGAAAAG
92654311 GAAGAAGGGAAAGAGAGAGAAGAT
1 GAAGAAGGGAAAGAGAGAGAAGAT
* *
92654335 GATGAAGGGAGAA-AG-GAGCAG-T
1 GAAGAAGGGA-AAGAGAGAGAAGAT
92654357 GAAGAAGGGAA
1 GAAGAAGGGAA
92654368 GACTTGTTTG
Statistics
Matches: 29, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
21 1 0.03
22 10 0.34
23 5 0.17
24 11 0.38
25 2 0.07
ACGTcount: A:0.49, C:0.02, G:0.44, T:0.05
Consensus pattern (24 bp):
GAAGAAGGGAAAGAGAGAGAAGAT
Done.