Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A06
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 115140250
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2234201 characters in sequence are not A, C, G, or T
File 275 of 345
Found at i:93682878 original size:54 final size:54
Alignment explanation
Indices: 93682774--93682885 Score: 172
Period size: 54 Copynumber: 2.1 Consensus size: 54
93682764 AGGAAGCGTC
*
93682774 CTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTATGCCACAATTATCTGATCTGGTGACTCTGCCACATATATCTGTT
* * *
93682828 CTGGTGGCTCTGCCACGATTATCTGTATCTGGTGACTCTGTCACAT-TATCTGTT
1 CTGGTGGCTATGCCACAATTATCTG-ATCTGGTGACTCTGCCACATATATCTGTT
93682882 CTGG
1 CTGG
93682886 CAGCCATGCT
Statistics
Matches: 53, Mismatches: 4, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
54 35 0.66
55 18 0.34
ACGTcount: A:0.16, C:0.24, G:0.23, T:0.37
Consensus pattern (54 bp):
CTGGTGGCTATGCCACAATTATCTGATCTGGTGACTCTGCCACATATATCTGTT
Found at i:93689152 original size:24 final size:24
Alignment explanation
Indices: 93689119--93689186 Score: 102
Period size: 24 Copynumber: 2.8 Consensus size: 24
93689109 AAGTCTGTTT
* *
93689119 GGAGAAGATTTAGGAGCT-AATAA
1 GGAGAGGATTTAGGAGCTGAACAA
93689142 GGGAGAGGATTTAGGAGCTGAACAA
1 -GGAGAGGATTTAGGAGCTGAACAA
93689167 GGAGAGGATTTAGGAGCTGA
1 GGAGAGGATTTAGGAGCTGA
93689187 TCAGGGTGAA
Statistics
Matches: 41, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
24 37 0.90
25 4 0.10
ACGTcount: A:0.37, C:0.06, G:0.38, T:0.19
Consensus pattern (24 bp):
GGAGAGGATTTAGGAGCTGAACAA
Found at i:93689969 original size:16 final size:15
Alignment explanation
Indices: 93689943--93689972 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
93689933 ACTAGATCGG
93689943 CAAAAGCCGAAAAGC
1 CAAAAGCCGAAAAGC
93689958 CAAAATGCCGAAAAG
1 CAAAA-GCCGAAAAG
93689973 TTGGTATTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.53, C:0.23, G:0.20, T:0.03
Consensus pattern (15 bp):
CAAAAGCCGAAAAGC
Found at i:93690451 original size:27 final size:28
Alignment explanation
Indices: 93690390--93690478 Score: 85
Period size: 27 Copynumber: 3.2 Consensus size: 28
93690380 AGGAAGCGTC
93690390 CTGGTGGCTATGCCACAAATTATCTGAT
1 CTGGTGGCTATGCCACAAATTATCTGAT
* * * *
93690418 CTAGTGGCTCTGCCCCATA-TATCT-ATT
1 CTGGTGGCTATGCCACAAATTATCTGA-T
* *
93690445 CTGGTGGCTTTGCCAC-GATTATCTGTAT
1 CTGGTGGCTATGCCACAAATTATCTG-AT
93690473 CTGGTG
1 CTGGTG
93690479 ATTTTGTCAC
Statistics
Matches: 49, Mismatches: 8, Indels: 8
0.75 0.12 0.12
Matches are distributed among these distances:
26 2 0.04
27 24 0.49
28 22 0.45
29 1 0.02
ACGTcount: A:0.18, C:0.24, G:0.22, T:0.36
Consensus pattern (28 bp):
CTGGTGGCTATGCCACAAATTATCTGAT
Found at i:93690484 original size:28 final size:26
Alignment explanation
Indices: 93690390--93690502 Score: 82
Period size: 27 Copynumber: 4.2 Consensus size: 26
93690380 AGGAAGCGTC
* * *
93690390 CTGGTGGCTATGCCACAAATTATCTGAT
1 CTGGTGACTTTGCCAC--ATTATCTGTT
* * * * *
93690418 CTAGTGGCTCTGCCCCATATATCTATT
1 CTGGTGACTTTGCCACAT-TATCTGTT
*
93690445 CTGGTGGCTTTGCCACGATTATCTGTAT
1 CTGGTGACTTTGCCAC-ATTATCTGT-T
* *
93690473 CTGGTGATTTTGTCACATTATCTGTT
1 CTGGTGACTTTGCCACATTATCTGTT
93690499 CTGG
1 CTGG
93690503 CAGCCATGCT
Statistics
Matches: 70, Mismatches: 12, Indels: 8
0.78 0.13 0.09
Matches are distributed among these distances:
26 7 0.10
27 34 0.49
28 29 0.41
ACGTcount: A:0.18, C:0.22, G:0.21, T:0.39
Consensus pattern (26 bp):
CTGGTGACTTTGCCACATTATCTGTT
Found at i:93691806 original size:13 final size:15
Alignment explanation
Indices: 93691778--93691811 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
93691768 TTACTAAAAC
93691778 TTTATTATTATATTT
1 TTTATTATTATATTT
* *
93691793 TTTATTTTTATTTTT
1 TTTATTATTATATTT
93691808 TTTA
1 TTTA
93691812 AAAAAATCCA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.21, C:0.00, G:0.00, T:0.79
Consensus pattern (15 bp):
TTTATTATTATATTT
Found at i:93694300 original size:43 final size:43
Alignment explanation
Indices: 93694264--93694473 Score: 384
Period size: 43 Copynumber: 4.9 Consensus size: 43
93694254 CACCGGAATT
*
93694264 AAGCCTGCTAGGCACGAAGACCCGAATACACATCACCGGCACG
1 AAGCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACG
*
93694307 AAGCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACA
1 AAGCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACG
93694350 AAGCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACG
1 AAGCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACG
93694393 AAGCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACG
1 AAGCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACG
**
93694436 AAGCCTGCTAGGCACGAAGGCTGGAATACACATCACCG
1 AAGCCTGCTAGGCACGAAGGCCCGAATACACATCACCG
93694474 AGTTTCATGC
Statistics
Matches: 162, Mismatches: 5, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
43 162 1.00
ACGTcount: A:0.31, C:0.34, G:0.25, T:0.10
Consensus pattern (43 bp):
AAGCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACG
Found at i:93697969 original size:27 final size:27
Alignment explanation
Indices: 93697939--93698252 Score: 337
Period size: 27 Copynumber: 11.6 Consensus size: 27
93697929 TTAGTTTACC
93697939 AAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* * *
93697966 AAATTACTAAAATACCCTTGGTTTATA
1 AAATTACCAAAATACCCCTGGTTTGTA
* * *
93697993 AAATCACAAAAATACCCTTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* *
93698020 AAATTACCAAAATACCCTTGGTTTATA
1 AAATTACCAAAATACCCCTGGTTTGTA
*
93698047 AAATCACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* **
93698074 AAATTACCAAAATACCCTTGGTTTACA
1 AAATTACCAAAATACCCCTGGTTTGTA
*
93698101 AAATTACCAAAATACCCCTAGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* * * *
93698128 AAATTACTAGAATACCCTTGGTTTATA
1 AAATTACCAAAATACCCCTGGTTTGTA
* *
93698155 AAATTACCAAAATACCCCAT-ATTTGTG
1 AAATTACCAAAATACCCC-TGGTTTGTA
* **
93698182 AAATTACCAAAATA-CCCTTGTAAGGTA
1 AAATTACCAAAATACCCCTGGT-TTGTA
* * **
93698209 GAATTACCGAAATACCCCT-GTAGGGTA
1 AAATTACCAAAATACCCCTGGT-TTGTA
*
93698236 GAATTACCAAAATACCC
1 AAATTACCAAAATACCC
93698253 TTCTAGGGTA
Statistics
Matches: 244, Mismatches: 39, Indels: 8
0.84 0.13 0.03
Matches are distributed among these distances:
25 1 0.00
26 4 0.02
27 234 0.96
28 5 0.02
ACGTcount: A:0.40, C:0.21, G:0.10, T:0.29
Consensus pattern (27 bp):
AAATTACCAAAATACCCCTGGTTTGTA
Found at i:93698214 original size:54 final size:54
Alignment explanation
Indices: 93697939--93698254 Score: 415
Period size: 54 Copynumber: 5.9 Consensus size: 54
93697929 TTAGTTTACC
*
93697939 AAATTACCAAAATACCCCTGGTTTGTAAAATTACTAAAATACCCTTGGTTTATA
1 AAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCTTGGTTTATA
* * *
93697993 AAATCACAAAAATACCCTTGGTTTGTAAAATTACCAAAATACCCTTGGTTTATA
1 AAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCTTGGTTTATA
* *
93698047 AAATCACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCTTGGTTTACA
1 AAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCTTGGTTTATA
* * *
93698101 AAATTACCAAAATACCCCTAGTTTGTAAAATTACTAGAATACCCTTGGTTTATA
1 AAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCTTGGTTTATA
* * *
93698155 AAATTACCAAAATACCCCAT-ATTTGTGAAATTACCAAAATACCCTT-G-TAAGGTA
1 AAATTACCAAAATACCCC-TGGTTTGTAAAATTACCAAAATACCCTTGGTTTA--TA
* * ** *
93698209 GAATTACCGAAATACCCCT-GTAGGGTAGAATTACCAAAATACCCTT
1 AAATTACCAAAATACCCCTGGT-TTGTAAAATTACCAAAATACCCTT
93698255 CTAGGGTAGA
Statistics
Matches: 234, Mismatches: 24, Indels: 8
0.88 0.09 0.03
Matches are distributed among these distances:
52 2 0.01
53 3 0.01
54 228 0.97
55 1 0.00
ACGTcount: A:0.40, C:0.21, G:0.10, T:0.30
Consensus pattern (54 bp):
AAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCTTGGTTTATA
Found at i:93698241 original size:81 final size:81
Alignment explanation
Indices: 93698156--93698406 Score: 303
Period size: 81 Copynumber: 3.1 Consensus size: 81
93698146 TGGTTTATAA
* * ** * *
93698156 AATTACCAAAATACCCCATATTTGTG-A-AATTACCAAAATACCCTTGTAAGGTAGAATTACCGA
1 AATTACCAAAATACCCC-T-TTAGGGTAGAATTACTGAAATACCCCTGTAGGGTAGAATTACCGA
93698219 AATACCCCTGTAGGGTAG
64 AATACCCCTGTAGGGTAG
*
93698237 AATTACCAAAATA-CCCTTCTAGGGTAGAATTACTGAAATACCCCTGTAGGGTAGAATTA-CAAG
1 AATTACCAAAATACCCCTT-TAGGGTAGAATTACTGAAATACCCCTGTAGGGTAGAATTACCGA-
* *
93698300 AATACACCTATAGGGTAG
64 AATACCCCTGTAGGGTAG
* * *
93698318 AATTACCGAAATACCCCTGTAGGGTAGAATTACTGAAATACCCCTGTAGGGTAGAATTACCGAGA
1 AATTACCAAAATACCCCTTTAGGGTAGAATTACTGAAATACCCCTGTAGGGTAGAATTACCGAAA
* * *
93698383 TACCCTTGTGGGGTAA
66 TACCCCTGTAGGGTAG
93698399 AATTACCA
1 AATTACCA
93698407 TTTTACCCCT
Statistics
Matches: 145, Mismatches: 19, Indels: 12
0.82 0.11 0.07
Matches are distributed among these distances:
78 1 0.01
79 4 0.03
80 6 0.04
81 128 0.88
82 6 0.04
ACGTcount: A:0.37, C:0.20, G:0.18, T:0.25
Consensus pattern (81 bp):
AATTACCAAAATACCCCTTTAGGGTAGAATTACTGAAATACCCCTGTAGGGTAGAATTACCGAAA
TACCCCTGTAGGGTAG
Found at i:93698259 original size:27 final size:27
Alignment explanation
Indices: 93698183--93698405 Score: 295
Period size: 27 Copynumber: 8.3 Consensus size: 27
93698173 ATATTTGTGA
* * *
93698183 AATTACCAAAATACCCTTGTAAGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
93698210 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * *
93698237 AATTACCAAAATACCCTTCTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
93698264 AATTACTGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * *
93698291 AATTA-CAAGAATACACCTATAGGGTAG
1 AATTACCGA-AATACCCCTGTAGGGTAG
93698318 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
93698345 AATTACTGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * * *
93698372 AATTACCGAGATACCCTTGTGGGGTAA
1 AATTACCGAAATACCCCTGTAGGGTAG
93698399 AATTACC
1 AATTACC
93698406 ATTTTACCCC
Statistics
Matches: 171, Mismatches: 23, Indels: 4
0.86 0.12 0.02
Matches are distributed among these distances:
26 1 0.01
27 168 0.98
28 2 0.01
ACGTcount: A:0.36, C:0.20, G:0.20, T:0.25
Consensus pattern (27 bp):
AATTACCGAAATACCCCTGTAGGGTAG
Found at i:93698787 original size:22 final size:22
Alignment explanation
Indices: 93698762--93698811 Score: 64
Period size: 22 Copynumber: 2.3 Consensus size: 22
93698752 GATGGCTCTT
93698762 TGCCAACCTAAATATGGCTTCG
1 TGCCAACCTAAATATGGCTTCG
* * * *
93698784 TGCCATCTTGACTATGGCTTCG
1 TGCCAACCTAAATATGGCTTCG
93698806 TGCCAA
1 TGCCAA
93698812 ACATATTTAC
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.22, C:0.28, G:0.20, T:0.30
Consensus pattern (22 bp):
TGCCAACCTAAATATGGCTTCG
Found at i:93699214 original size:6 final size:6
Alignment explanation
Indices: 93699199--93699323 Score: 103
Period size: 6 Copynumber: 20.3 Consensus size: 6
93699189 ATTCTGTTAC
* * *
93699199 CTGATA CTGATT CTGATT TTGATT CTG-TT ACCTGATA CTGATT CTGATT
1 CTGATT CTGATT CTGATT CTGATT CTGATT --CTGATT CTGATT CTGATT
* * *
93699248 CTGATT CTG-TCAC CTAATT CTGATT CTGATT CTGATT CTGATT CTG-TCAC
1 CTGATT CTGAT--T CTGATT CTGATT CTGATT CTGATT CTGATT CTGAT--T
* *
93699298 CTTATT CTAATT CTGATT CTGATT CT
1 CTGATT CTGATT CTGATT CTGATT CT
93699324 AGTTCTAGTT
Statistics
Matches: 96, Mismatches: 14, Indels: 18
0.75 0.11 0.14
Matches are distributed among these distances:
5 4 0.04
6 82 0.85
7 7 0.07
8 3 0.03
ACGTcount: A:0.19, C:0.20, G:0.14, T:0.47
Consensus pattern (6 bp):
CTGATT
Found at i:93699227 original size:31 final size:31
Alignment explanation
Indices: 93699189--93699287 Score: 162
Period size: 31 Copynumber: 3.2 Consensus size: 31
93699179 CTGATTTTTT
*
93699189 ATTCTGTTACCTGATACTGATTCTGATTTTG
1 ATTCTGTTACCTGATACTGATTCTGATTCTG
93699220 ATTCTGTTACCTGATACTGATTCTGATTCTG
1 ATTCTGTTACCTGATACTGATTCTGATTCTG
* * *
93699251 ATTCTGTCACCTAATTCTGATTCTGATTCTG
1 ATTCTGTTACCTGATACTGATTCTGATTCTG
93699282 ATTCTG
1 ATTCTG
93699288 ATTCTGTCAC
Statistics
Matches: 64, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 64 1.00
ACGTcount: A:0.19, C:0.19, G:0.15, T:0.46
Consensus pattern (31 bp):
ATTCTGTTACCTGATACTGATTCTGATTCTG
Found at i:93699240 original size:37 final size:36
Alignment explanation
Indices: 93699199--93699323 Score: 152
Period size: 37 Copynumber: 3.6 Consensus size: 36
93699189 ATTCTGTTAC
* *
93699199 CTGATACTGATTCTGATTTTGATTCTGT----TA-C
1 CTGATACTGATTCTGATTCTGATTCTGTCACCTATT
93699230 CTGATACTGATTCTGATTCTGATTCTGTCACCTAATT
1 CTGATACTGATTCTGATTCTGATTCTGTCACCT-ATT
*
93699267 CTGATTCTGATTCTGATTCTGATTCTGTCACCTTATT
1 CTGATACTGATTCTGATTCTGATTCTGTCACC-TATT
* *
93699304 CTAATTCTGATTCTGATTCT
1 CTGATACTGATTCTGATTCT
93699324 AGTTCTAGTT
Statistics
Matches: 83, Mismatches: 4, Indels: 8
0.87 0.04 0.08
Matches are distributed among these distances:
31 27 0.33
35 1 0.01
36 1 0.01
37 53 0.64
38 1 0.01
ACGTcount: A:0.19, C:0.20, G:0.14, T:0.47
Consensus pattern (36 bp):
CTGATACTGATTCTGATTCTGATTCTGTCACCTATT
Found at i:93699305 original size:31 final size:31
Alignment explanation
Indices: 93699189--93699323 Score: 153
Period size: 31 Copynumber: 4.2 Consensus size: 31
93699179 CTGATTTTTT
* *
93699189 ATTCTGTTACCTGATACTGATTCTGATTTTG
1 ATTCTGTCACCTGATACTGATTCTGATTCTG
*
93699220 ATTCTGTTACCTGATACTGATTCTGATTCTG
1 ATTCTGTCACCTGATACTGATTCTGATTCTG
*
93699251 ATTCTGTCACCTAATTCTGATTCTGATTCTGATTCTG
1 ATTCTGTCA-C-----CTGATACTGATTCTGATTCTG
* * *
93699288 ATTCTGTCACCTTATTCTAATTCTGATTCTG
1 ATTCTGTCACCTGATACTGATTCTGATTCTG
93699319 ATTCT
1 ATTCT
93699324 AGTTCTAGTT
Statistics
Matches: 93, Mismatches: 5, Indels: 12
0.85 0.05 0.11
Matches are distributed among these distances:
31 62 0.67
32 1 0.01
36 1 0.01
37 29 0.31
ACGTcount: A:0.19, C:0.20, G:0.13, T:0.47
Consensus pattern (31 bp):
ATTCTGTCACCTGATACTGATTCTGATTCTG
Found at i:93700842 original size:27 final size:27
Alignment explanation
Indices: 93700811--93701081 Score: 317
Period size: 27 Copynumber: 10.0 Consensus size: 27
93700801 TAGAATACTT
*
93700811 TAGTTTATCAAATTACCAAAATACCCC
1 TAGTTTATAAAATTACCAAAATACCCC
* ** *
93700838 TAGTTTGTAAAATTACTGAAATACCCT
1 TAGTTTATAAAATTACCAAAATACCCC
* * *
93700865 TGGTTTATAAAATCACCAAAATACCCT
1 TAGTTTATAAAATTACCAAAATACCCC
* * * **
93700892 TGGTTTGTAAAATTACTAAAATACCTT
1 TAGTTTATAAAATTACCAAAATACCCC
*
93700919 TAGTTTATAAAATCACCAAAATACCCC
1 TAGTTTATAAAATTACCAAAATACCCC
* * *
93700946 TGGTTTGTAAAATTACCAAAATACCCT
1 TAGTTTATAAAATTACCAAAATACCCC
* *
93700973 TGGTTTACAAAATTACCAAAATACCCC
1 TAGTTTATAAAATTACCAAAATACCCC
* * * *
93701000 TAGTTTGTAAAATTACTAGAATACCCT
1 TAGTTTATAAAATTACCAAAATACCCC
*
93701027 TGGTTTATAAAATTACCAAAATACCCC
1 TAGTTTATAAAATTACCAAAATACCCC
*
93701054 TAGTTTGTAAAATTACCAAAATACCCC
1 TAGTTTATAAAATTACCAAAATACCCC
93701081 T
1 T
93701082 GATTCGTGAA
Statistics
Matches: 204, Mismatches: 40, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 204 1.00
ACGTcount: A:0.39, C:0.20, G:0.08, T:0.32
Consensus pattern (27 bp):
TAGTTTATAAAATTACCAAAATACCCC
Found at i:93700957 original size:81 final size:81
Alignment explanation
Indices: 93700820--93701081 Score: 389
Period size: 81 Copynumber: 3.2 Consensus size: 81
93700810 TTAGTTTATC
* *
93700820 AAATTACCAAAATACCCCTAGTTTGTAAAATTACTGAAATACCCTTGGTTTATAAAATCACCAAA
1 AAATTACCAAAATACCCCTAGTTTGTAAAATTACTAAAATACCCTTGGTTTATAAAATTACCAAA
93700885 ATACCCTTGGTTTGTA
66 ATACCCTTGGTTTGTA
* ** * * * * *
93700901 AAATTACTAAAATACCTTTAGTTTATAAAATCACCAAAATACCCCTGGTTTGTAAAATTACCAAA
1 AAATTACCAAAATACCCCTAGTTTGTAAAATTACTAAAATACCCTTGGTTTATAAAATTACCAAA
**
93700966 ATACCCTTGGTTTACA
66 ATACCCTTGGTTTGTA
*
93700982 AAATTACCAAAATACCCCTAGTTTGTAAAATTACTAGAATACCCTTGGTTTATAAAATTACCAAA
1 AAATTACCAAAATACCCCTAGTTTGTAAAATTACTAAAATACCCTTGGTTTATAAAATTACCAAA
* *
93701047 ATACCCCTAGTTTGTA
66 ATACCCTTGGTTTGTA
93701063 AAATTACCAAAATACCCCT
1 AAATTACCAAAATACCCCT
93701082 GATTCGTGAA
Statistics
Matches: 156, Mismatches: 25, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
81 156 1.00
ACGTcount: A:0.40, C:0.21, G:0.08, T:0.31
Consensus pattern (81 bp):
AAATTACCAAAATACCCCTAGTTTGTAAAATTACTAAAATACCCTTGGTTTATAAAATTACCAAA
ATACCCTTGGTTTGTA
Found at i:93701094 original size:81 final size:82
Alignment explanation
Indices: 93700810--93701108 Score: 383
Period size: 81 Copynumber: 3.7 Consensus size: 82
93700800 TTAGAATACT
*
93700810 TTAGTTTATCAAATTACCAAAATACCCCTAGTTTGTAAAATTACT-GAAATACCCTTGGTTTATA
1 TTAGTTTATAAAATTACCAAAATACCCCTAGTTTGTAAAATTACTAGAAATACCCTTGGTTTATA
*
93700874 AAATCACCAAAATACCC
66 AAATTACCAAAATACCC
* * * ** * * * * *
93700891 TTGGTTTGTAAAATTACTAAAATACCTTTAGTTTATAAAATCACCA-AAATACCCCTGGTTTGTA
1 TTAGTTTATAAAATTACCAAAATACCCCTAGTTTGTAAAATTACTAGAAATACCCTTGGTTTATA
93700955 AAATTACCAAAATACCC
66 AAATTACCAAAATACCC
* *
93700972 TTGGTTTACAAAATTACCAAAATACCCCTAGTTTGTAAAATTACTAG-AATACCCTTGGTTTATA
1 TTAGTTTATAAAATTACCAAAATACCCCTAGTTTGTAAAATTACTAGAAATACCCTTGGTTTATA
93701036 AAATTACCAAAATACCC
66 AAATTACCAAAATACCC
* * * * *
93701053 CTAGTTTGTAAAATTACCAAAATACCCCT-GATTCGTGAAATTA-TCGAAATACCCTT
1 TTAGTTTATAAAATTACCAAAATACCCCTAG-TTTGTAAAATTACTAGAAATACCCTT
93701109 ATAGGGTAGA
Statistics
Matches: 185, Mismatches: 29, Indels: 8
0.83 0.13 0.04
Matches are distributed among these distances:
80 3 0.02
81 182 0.98
ACGTcount: A:0.39, C:0.20, G:0.09, T:0.32
Consensus pattern (82 bp):
TTAGTTTATAAAATTACCAAAATACCCCTAGTTTGTAAAATTACTAGAAATACCCTTGGTTTATA
AAATTACCAAAATACCC
Found at i:93701106 original size:54 final size:54
Alignment explanation
Indices: 93700813--93701079 Score: 417
Period size: 54 Copynumber: 4.9 Consensus size: 54
93700803 GAATACTTTA
* *
93700813 GTTTATCAAATTACCAAAATACCCCTAGTTTGTAAAATTACTGAAATACCCTTG
1 GTTTATAAAATTACCAAAATACCCCTAGTTTGTAAAATTACTAAAATACCCTTG
* * * * *
93700867 GTTTATAAAATCACCAAAATACCCTTGGTTTGTAAAATTACTAAAATACCTTTA
1 GTTTATAAAATTACCAAAATACCCCTAGTTTGTAAAATTACTAAAATACCCTTG
* * *
93700921 GTTTATAAAATCACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCTTG
1 GTTTATAAAATTACCAAAATACCCCTAGTTTGTAAAATTACTAAAATACCCTTG
* *
93700975 GTTTACAAAATTACCAAAATACCCCTAGTTTGTAAAATTACTAGAATACCCTTG
1 GTTTATAAAATTACCAAAATACCCCTAGTTTGTAAAATTACTAAAATACCCTTG
*
93701029 GTTTATAAAATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCC
1 GTTTATAAAATTACCAAAATACCCCTAGTTTGTAAAATTACTAAAATACCC
93701080 CTGATTCGTG
Statistics
Matches: 194, Mismatches: 19, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
54 194 1.00
ACGTcount: A:0.40, C:0.20, G:0.08, T:0.32
Consensus pattern (54 bp):
GTTTATAAAATTACCAAAATACCCCTAGTTTGTAAAATTACTAAAATACCCTTG
Found at i:93701149 original size:81 final size:80
Alignment explanation
Indices: 93701037--93701339 Score: 333
Period size: 81 Copynumber: 3.8 Consensus size: 80
93701027 TGGTTTATAA
* ** * **
93701037 AATTACCAAAATACCCCTAGT-TTGTAAAATTACCAAAATACCCCTG-ATTCGT-GAAATTATCG
1 AATTACCGAAATACCCCT-GTAGGGTAGAATTACCAAAATACCCCTGTA-GGGTAG-AATTA-CG
* *
93701099 AAATACCCTTATAGGGTAG
62 AAATACCCCTGTAGGGTAG
* * * * *
93701118 AATTACCGAAATACCCCTGTAGAGTAGAATTACTAAAATGCACGTGTAGGGTAGAATTACCGAAA
1 AATTACCGAAATACCCCTGTAGGGTAGAATTACCAAAATACCCCTGTAGGGTAGAATTA-CGAAA
93701183 TACCCCTGTAGGGTAG
65 TACCCCTGTAGGGTAG
* **
93701199 AATTACCGGAATACCCCTGTAGGGTAGAATTACTGAAATACCCCTGTAGGGTAGAATTACTGAAA
1 AATTACCGAAATACCCCTGTAGGGTAGAATTACCAAAATACCCCTGTAGGGTAGAATTAC-GAAA
93701264 TACCCCTGTAGGGTAG
65 TACCCCTGTAGGGTAG
* * * * * *
93701280 AATTACTGAAATACCCCTGTAGGGTAGAATTACCGATATACCCTTGTGGGGTAAAATTAC
1 AATTACCGAAATACCCCTGTAGGGTAGAATTACCAAAATACCCCTGTAGGGTAGAATTAC
93701340 CATTTTACCC
Statistics
Matches: 192, Mismatches: 26, Indels: 8
0.85 0.12 0.04
Matches are distributed among these distances:
80 3 0.02
81 187 0.97
82 2 0.01
ACGTcount: A:0.35, C:0.19, G:0.19, T:0.26
Consensus pattern (80 bp):
AATTACCGAAATACCCCTGTAGGGTAGAATTACCAAAATACCCCTGTAGGGTAGAATTACGAAAT
ACCCCTGTAGGGTAG
Found at i:93701340 original size:27 final size:27
Alignment explanation
Indices: 93701091--93701340 Score: 347
Period size: 27 Copynumber: 9.3 Consensus size: 27
93701081 TGATTCGTGA
* * *
93701091 AATTATCGAAATACCCTTATAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
93701118 AATTACCGAAATACCCCTGTAGAGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
** * * *
93701145 AATTACTAAAATGCACGTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
93701172 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
93701199 AATTACCGGAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
93701226 AATTACTGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
93701253 AATTACTGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
93701280 AATTACTGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * * *
93701307 AATTACCGATATACCCTTGTGGGGTAA
1 AATTACCGAAATACCCCTGTAGGGTAG
93701334 AATTACC
1 AATTACC
93701341 ATTTTACCCC
Statistics
Matches: 200, Mismatches: 23, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 200 1.00
ACGTcount: A:0.34, C:0.19, G:0.22, T:0.26
Consensus pattern (27 bp):
AATTACCGAAATACCCCTGTAGGGTAG
Found at i:93701722 original size:22 final size:22
Alignment explanation
Indices: 93701697--93701746 Score: 73
Period size: 22 Copynumber: 2.3 Consensus size: 22
93701687 GATGGCTCTT
93701697 TGCCAACCTAAATATGGCTTCG
1 TGCCAACCTAAATATGGCTTCG
* * *
93701719 TGCCATCTTAACTATGGCTTCG
1 TGCCAACCTAAATATGGCTTCG
93701741 TGCCAA
1 TGCCAA
93701747 ACATATTTAC
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.24, C:0.28, G:0.18, T:0.30
Consensus pattern (22 bp):
TGCCAACCTAAATATGGCTTCG
Found at i:93702149 original size:6 final size:6
Alignment explanation
Indices: 93702134--93702215 Score: 58
Period size: 6 Copynumber: 13.3 Consensus size: 6
93702124 ATTCTGTTAC
* * * * * *
93702134 CTGATA CTGATT CTGATT TTGATT TTGCTAC CTGATA CTGATT CTGATT
1 CTGATT CTGATT CTGATT CTGATT CTGAT-T CTGATT CTGATT CTGATT
* *
93702183 CTGATT CTG-TCAC CTAATT CTGATT CTGATT CT
1 CTGATT CTGAT--T CTGATT CTGATT CTGATT CT
93702216 AGTTCTAGTT
Statistics
Matches: 60, Mismatches: 12, Indels: 8
0.75 0.15 0.10
Matches are distributed among these distances:
5 1 0.02
6 53 0.88
7 5 0.08
8 1 0.02
ACGTcount: A:0.20, C:0.20, G:0.15, T:0.46
Consensus pattern (6 bp):
CTGATT
Found at i:93702169 original size:31 final size:30
Alignment explanation
Indices: 93702111--93702213 Score: 125
Period size: 31 Copynumber: 3.3 Consensus size: 30
93702101 TTGCATTCAC
*
93702111 ATTCTGATTTTTTATTCTGTTACCTGATACTG
1 ATTCTGA-TTTTGATTCTG-TACCTGATACTG
*
93702143 ATTCTGATTTTGATTTTGCTACCTGATACTG
1 ATTCTGATTTTGATTCTG-TACCTGATACTG
* * *
93702174 ATTCTGATTCTGATTCTGTCACCTAATTCTG
1 ATTCTGATTTTGATTCTGT-ACCTGATACTG
93702205 ATTCTGATT
1 ATTCTGATT
93702214 CTAGTTCTAG
Statistics
Matches: 63, Mismatches: 7, Indels: 3
0.86 0.10 0.04
Matches are distributed among these distances:
30 1 0.02
31 55 0.87
32 7 0.11
ACGTcount: A:0.19, C:0.17, G:0.14, T:0.50
Consensus pattern (30 bp):
ATTCTGATTTTGATTCTGTACCTGATACTG
Found at i:93706046 original size:23 final size:22
Alignment explanation
Indices: 93706013--93706120 Score: 90
Period size: 23 Copynumber: 4.5 Consensus size: 22
93706003 GGACAGCAAA
*
93706013 CTCTACTGAGCTGAAACGGTAAG
1 CTCTAC-GAGCTGAAACAGTAAG
* *
93706036 CTCTAACGAGCTGAATCAGCAAG
1 CTCT-ACGAGCTGAAACAGTAAG
* * *
93706059 TTCTTACGAGCTAAAATAGTAAG
1 CTC-TACGAGCTGAAACAGTAAG
93706082 CTCGTACGAGCTGATATATCAGTAAG
1 CTC-TACGAGCTGA-A-A-CAGTAAG
93706108 CTCATACGAGCTG
1 CTC-TACGAGCTG
93706121 TGATGAGTCC
Statistics
Matches: 67, Mismatches: 13, Indels: 7
0.77 0.15 0.08
Matches are distributed among these distances:
23 44 0.66
24 4 0.06
25 1 0.01
26 18 0.27
ACGTcount: A:0.32, C:0.21, G:0.22, T:0.24
Consensus pattern (22 bp):
CTCTACGAGCTGAAACAGTAAG
Found at i:93710743 original size:26 final size:26
Alignment explanation
Indices: 93710714--93710775 Score: 115
Period size: 26 Copynumber: 2.4 Consensus size: 26
93710704 ACTAGGGAAA
93710714 AAGCCCTTTTCGGTAAACTGGGGCAT
1 AAGCCCTTTTCGGTAAACTGGGGCAT
*
93710740 AAGCCATTTTCGGTAAACTGGGGCAT
1 AAGCCCTTTTCGGTAAACTGGGGCAT
93710766 AAGCCCTTTT
1 AAGCCCTTTT
93710776 GCACTTCCTC
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 34 1.00
ACGTcount: A:0.24, C:0.23, G:0.24, T:0.29
Consensus pattern (26 bp):
AAGCCCTTTTCGGTAAACTGGGGCAT
Found at i:93710840 original size:19 final size:19
Alignment explanation
Indices: 93710816--93710852 Score: 74
Period size: 19 Copynumber: 1.9 Consensus size: 19
93710806 CCAATGCATT
93710816 ATCATGTGCATATCATACA
1 ATCATGTGCATATCATACA
93710835 ATCATGTGCATATCATAC
1 ATCATGTGCATATCATAC
93710853 CTAGGGGCAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.35, C:0.22, G:0.11, T:0.32
Consensus pattern (19 bp):
ATCATGTGCATATCATACA
Found at i:93717284 original size:31 final size:31
Alignment explanation
Indices: 93717249--93717350 Score: 89
Period size: 31 Copynumber: 3.1 Consensus size: 31
93717239 GCTTTTGATA
93717249 TTTCATATTTCGTAACACTGGGCTGAAGCCTTTTCAT
1 TTTCATATTTCGTAACACTGGGCTGAAG-C----C-T
93717286 ATTTCATATTTCGTAACACTGGG-TCGAAGCCT
1 -TTTCATATTTCGTAACACTGGGCT-GAAGCCT
* ** *
93717318 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATATTTCGTAACACTGGGCTGAAGCCT
93717349 TT
1 TT
93717351 ACTGTAAACG
Statistics
Matches: 58, Mismatches: 4, Indels: 11
0.79 0.05 0.15
Matches are distributed among these distances:
31 28 0.48
32 1 0.02
33 1 0.02
37 2 0.03
38 26 0.45
ACGTcount: A:0.23, C:0.22, G:0.17, T:0.39
Consensus pattern (31 bp):
TTTCATATTTCGTAACACTGGGCTGAAGCCT
Found at i:93717288 original size:38 final size:38
Alignment explanation
Indices: 93717235--93717333 Score: 166
Period size: 38 Copynumber: 2.6 Consensus size: 38
93717225 TATACTAGGC
*
93717235 CGAAG-CTTTTGATATTTCATATTTCGTAACACTGGG-
1 CGAAGCCTTTTCATATTTCATATTTCGTAACACTGGGT
93717271 CTGAAGCCTTTTCATATTTCATATTTCGTAACACTGGGT
1 C-GAAGCCTTTTCATATTTCATATTTCGTAACACTGGGT
93717310 CGAAGCCTTTTCATATTTCATATT
1 CGAAGCCTTTTCATATTTCATATT
93717334 ACTGGGCCGA
Statistics
Matches: 59, Mismatches: 1, Indels: 4
0.92 0.02 0.06
Matches are distributed among these distances:
36 1 0.02
37 4 0.07
38 53 0.90
39 1 0.02
ACGTcount: A:0.24, C:0.19, G:0.15, T:0.41
Consensus pattern (38 bp):
CGAAGCCTTTTCATATTTCATATTTCGTAACACTGGGT
Found at i:93717605 original size:26 final size:26
Alignment explanation
Indices: 93717572--93717644 Score: 121
Period size: 26 Copynumber: 2.8 Consensus size: 26
93717562 CTCTTTTAAT
*
93717572 AACTGGGGCA-ACAGCCCTTTTTGGTA
1 AACTGGGGCATA-AGCCCTTTTCGGTA
93717598 AACTGGGGCATAAGCCCTTTTCGGTA
1 AACTGGGGCATAAGCCCTTTTCGGTA
93717624 AACTGGGGCATAAGCCCTTTT
1 AACTGGGGCATAAGCCCTTTT
93717645 GCACTTCCTC
Statistics
Matches: 45, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
26 44 0.98
27 1 0.02
ACGTcount: A:0.23, C:0.23, G:0.26, T:0.27
Consensus pattern (26 bp):
AACTGGGGCATAAGCCCTTTTCGGTA
Found at i:93717763 original size:4 final size:5
Alignment explanation
Indices: 93717702--93717787 Score: 65
Period size: 5 Copynumber: 17.6 Consensus size: 5
93717692 ACATCATGTG
* * * *
93717702 CATAT CATA- CATAT TATGT GCATAT CGTA- CATAT CATGT GCATAT CATA-
1 CATAT CATAT CATAT CATAT -CATAT CATAT CATAT CATAT -CATAT CATAT
*
93717751 CATAT CATA- CATAT CATGT GCATAT CATAT CA-AT CAT
1 CATAT CATAT CATAT CATAT -CATAT CATAT CATAT CAT
93717788 GTATATCAAA
Statistics
Matches: 63, Mismatches: 10, Indels: 16
0.71 0.11 0.18
Matches are distributed among these distances:
4 19 0.30
5 33 0.52
6 11 0.17
ACGTcount: A:0.36, C:0.20, G:0.08, T:0.36
Consensus pattern (5 bp):
CATAT
Found at i:93717778 original size:20 final size:20
Alignment explanation
Indices: 93717694--93717758 Score: 112
Period size: 20 Copynumber: 3.2 Consensus size: 20
93717684 TTATGATTAC
93717694 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
* *
93717714 ATTATGTGCATATCGTACAT
1 ATCATGTGCATATCATACAT
93717734 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
93717754 ATCAT
1 ATCAT
93717759 ACATATCATG
Statistics
Matches: 41, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 41 1.00
ACGTcount: A:0.34, C:0.18, G:0.11, T:0.37
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:93717795 original size:9 final size:10
Alignment explanation
Indices: 93717702--93717787 Score: 65
Period size: 9 Copynumber: 8.8 Consensus size: 10
93717692 ACATCATGTG
93717702 CATATCATA-
1 CATATCATAT
* *
93717711 CATATTATGT
1 CATATCATAT
*
93717721 GCATATCGTA-
1 -CATATCATAT
*
93717731 CATATCATGT
1 CATATCATAT
93717741 GCATATCATA-
1 -CATATCATAT
93717751 CATATCATA-
1 CATATCATAT
*
93717760 CATATCATGT
1 CATATCATAT
93717770 GCATATCATAT
1 -CATATCATAT
93717781 CA-ATCAT
1 CATATCAT
93717788 GTATATCAAA
Statistics
Matches: 61, Mismatches: 10, Indels: 12
0.73 0.12 0.14
Matches are distributed among these distances:
9 36 0.59
10 2 0.03
11 23 0.38
ACGTcount: A:0.36, C:0.20, G:0.08, T:0.36
Consensus pattern (10 bp):
CATATCATAT
Found at i:93717795 original size:29 final size:29
Alignment explanation
Indices: 93717722--93717787 Score: 107
Period size: 29 Copynumber: 2.3 Consensus size: 29
93717712 ATATTATGTG
*
93717722 CATATCGTACATATCATGTGCATATCATA
1 CATATCATACATATCATGTGCATATCATA
93717751 CATATCATACATATCATGTGCATATCATA
1 CATATCATACATATCATGTGCATATCATA
93717780 TCA-ATCAT
1 -CATATCAT
93717788 GTATATCAAA
Statistics
Matches: 35, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
29 33 0.94
30 2 0.06
ACGTcount: A:0.36, C:0.21, G:0.08, T:0.35
Consensus pattern (29 bp):
CATATCATACATATCATGTGCATATCATA
Found at i:93725665 original size:40 final size:36
Alignment explanation
Indices: 93725599--93725730 Score: 153
Period size: 35 Copynumber: 3.6 Consensus size: 36
93725589 CATGGCAAAG
93725599 TGTGAAATGTAGGTATGGTA-TCATCCATACTGAGT
1 TGTGAAATGTAGGTATGGTATTCATCCATACTGAGT
93725634 TGTGAAATGTAGGTATGGTATTACCAAATCCATACTGAGT
1 TGTGAAATGTAGGTATGGTATT--C--ATCCATACTGAGT
** * *
93725674 TAAGAAATGTAGGTATGGCATT--TCCCATACCGAGT
1 TGTGAAATGTAGGTATGGTATTCAT-CCATACTGAGT
*
93725709 TGTAAAATGTAGGTATGGTATT
1 TGTGAAATGTAGGTATGGTATT
93725731 TCAATGAGGA
Statistics
Matches: 83, Mismatches: 8, Indels: 12
0.81 0.08 0.12
Matches are distributed among these distances:
34 1 0.01
35 48 0.58
36 1 0.01
38 1 0.01
40 32 0.39
ACGTcount: A:0.31, C:0.11, G:0.24, T:0.33
Consensus pattern (36 bp):
TGTGAAATGTAGGTATGGTATTCATCCATACTGAGT
Found at i:93729447 original size:40 final size:40
Alignment explanation
Indices: 93729392--93729537 Score: 206
Period size: 40 Copynumber: 3.6 Consensus size: 40
93729382 GATATATTAA
93729392 ATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAATGT
1 ATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAATGT
* *
93729432 ATATCCGAGTTAAATCCCGCAAGCTTCGTGCTGGTAATGT
1 ATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAATGT
* *
93729472 ATATCCGGGTTAAATCCCGCAGGCTTAGTGCTGGT-A-CT
1 ATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAATGT
* *
93729510 ATATCCGGGCTTATAGTTCCGCAGGCTT
1 ATATCCGGG-TTA-AATCCCGCAGGCTT
93729538 TGAGCTAGTA
Statistics
Matches: 96, Mismatches: 8, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
38 10 0.10
39 4 0.04
40 82 0.85
ACGTcount: A:0.21, C:0.23, G:0.25, T:0.30
Consensus pattern (40 bp):
ATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAATGT
Found at i:93737478 original size:39 final size:40
Alignment explanation
Indices: 93737407--93737521 Score: 196
Period size: 39 Copynumber: 2.9 Consensus size: 40
93737397 GATATATTAA
*
93737407 ATATCCGGGTTAAATCCCGTAGGCTTCATGCTGGTAATGT
1 ATATCCGGGTTAAATCCCGTAGGCTTCGTGCTGGTAATGT
*
93737447 ATATCCGGGTTAAAT-CCGTAAGCTTCGTGCTGGTAATGT
1 ATATCCGGGTTAAATCCCGTAGGCTTCGTGCTGGTAATGT
*
93737486 ATATCCGGGTTAAATCCCGTAGGCTTAGTGCTGGTA
1 ATATCCGGGTTAAATCCCGTAGGCTTCGTGCTGGTA
93737522 CTATATCCGA
Statistics
Matches: 70, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
39 37 0.53
40 33 0.47
ACGTcount: A:0.23, C:0.19, G:0.26, T:0.32
Consensus pattern (40 bp):
ATATCCGGGTTAAATCCCGTAGGCTTCGTGCTGGTAATGT
Found at i:93739208 original size:42 final size:43
Alignment explanation
Indices: 93739108--93739259 Score: 157
Period size: 43 Copynumber: 3.5 Consensus size: 43
93739098 CAATGGAAAC
* * * *
93739108 GTCCCAGACGTGGTCTTACATGTAATCAAATATCGATGCCACT
1 GTCCCAGACATGGTCTTACACGAAATCAAATATCGATGCCAAT
*
93739151 GTCCCAGACAGGGTCTTACACGAAATCAAATA-CGATG-CAGAT
1 GTCCCAGACATGGTCTTACACGAAATCAAATATCGATGCCA-AT
* * *
93739193 GTCCCAAACATGGTCTTACACGTAAATCATAA-GTCGATGCCAAC
1 GTCCCAGACATGGTCTTACACG-AAATCA-AATATCGATGCCAAT
* * *
93739237 GTTCCAGACGTGTTCTTACACGA
1 GTCCCAGACATGGTCTTACACGA
93739260 TAACACATAT
Statistics
Matches: 91, Mismatches: 13, Indels: 10
0.80 0.11 0.09
Matches are distributed among these distances:
41 2 0.02
42 26 0.29
43 35 0.38
44 26 0.29
45 2 0.02
ACGTcount: A:0.31, C:0.26, G:0.19, T:0.24
Consensus pattern (43 bp):
GTCCCAGACATGGTCTTACACGAAATCAAATATCGATGCCAAT
Found at i:93742974 original size:50 final size:50
Alignment explanation
Indices: 93742788--93742977 Score: 177
Period size: 50 Copynumber: 3.8 Consensus size: 50
93742778 GTACGCATGA
* *
93742788 GACCTATCAATCTGGAACACATAGTAGCCTACACTTAGTACTACACACGT
1 GACCTATCAATCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGT
* * ** * * *
93742838 GACTTAACCGTCTGATACACGTAGTACCCTGCACTTAGTACTACACACGT
1 GACCTATCAATCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGT
* * * * * *
93742888 GA-TTGAATTTAAT-GGGTACGCATAGTAGCCTGCACTTAGTACTACACATGC
1 GACCT--A-TCAATCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGT
* * *
93742939 AACCTATCAATTTGGTACACGTAGTAGCCTGCACTTAGT
1 GACCTATCAATCTGGTACACATAGTAGCCTGCACTTAGT
93742978 TTTTCCCACG
Statistics
Matches: 109, Mismatches: 26, Indels: 10
0.75 0.18 0.07
Matches are distributed among these distances:
49 6 0.06
50 68 0.62
51 33 0.30
52 2 0.02
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.27
Consensus pattern (50 bp):
GACCTATCAATCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGT
Found at i:93752950 original size:42 final size:43
Alignment explanation
Indices: 93752874--93752956 Score: 116
Period size: 42 Copynumber: 2.0 Consensus size: 43
93752864 CTTCTATGTA
*
93752874 ATCAAATATCGATGCCACTATCCCGGACAGGGTCTTACACGAG
1 ATCAAATATCGATGCCACTATCCCAGACAGGGTCTTACACGAG
* *
93752917 ATCAAATA-CGATGCCGA-TGTCCCAGACATGGTCTTACACG
1 ATCAAATATCGATGCC-ACTATCCCAGACAGGGTCTTACACG
93752957 TAAATCATAA
Statistics
Matches: 36, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
42 27 0.75
43 9 0.25
ACGTcount: A:0.30, C:0.28, G:0.20, T:0.22
Consensus pattern (43 bp):
ATCAAATATCGATGCCACTATCCCAGACAGGGTCTTACACGAG
Found at i:93757567 original size:37 final size:37
Alignment explanation
Indices: 93757488--93757567 Score: 97
Period size: 37 Copynumber: 2.2 Consensus size: 37
93757478 CTTATTACGA
* * * *
93757488 AGTCTTACCCGGACATAATCTCTACACGAAGTTATCG
1 AGTCTTACCCGGACAAAATCCCCACACGAAGTCATCG
**
93757525 AGTCTTACCCGGACAAAATCCCCACACGTCGTCATCG
1 AGTCTTACCCGGACAAAATCCCCACACGAAGTCATCG
*
93757562 GGTCTT
1 AGTCTT
93757568 TAGAGCTCGG
Statistics
Matches: 36, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
37 36 1.00
ACGTcount: A:0.26, C:0.31, G:0.17, T:0.25
Consensus pattern (37 bp):
AGTCTTACCCGGACAAAATCCCCACACGAAGTCATCG
Found at i:93757758 original size:47 final size:47
Alignment explanation
Indices: 93757686--93758340 Score: 1018
Period size: 47 Copynumber: 13.9 Consensus size: 47
93757676 CCCTTCGGGA
* * * * * *
93757686 CTTATCACATTTATACACTTTCACATCCATCACGTTGG-CACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
93757732 CCTGTCACATTATATACACTTTCACATTCATCACATCGGCCGTTAGGC
1 CTTATCACA-TATATACACTTTCACATTCATCACATCGGCCATTAGGC
93757780 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
93757827 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
93757874 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCCTTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
93757923 CCTATCACATATATATACACTTTCACATTCATCATATCGGCCGTTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
93757972 CTTATCAC-TATATACACTTTCACATTCATCACATCGG-CATTAGG-
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
93758016 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
93758063 CCTATCA-ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
93758109 CCTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
93758158 CGTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
93758205 CTTATCACATATATACACTTTCACCTTCATCGCATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
93758252 CTTATCACATATATACACTTTCACATTCATCGCATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
93758299 CTTATCAC--ATATACACTTTCACATTCATCACATCGGTCATTA
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTA
93758341 CGCCATACTA
Statistics
Matches: 572, Mismatches: 27, Indels: 21
0.92 0.04 0.03
Matches are distributed among these distances:
44 8 0.01
45 67 0.12
46 88 0.15
47 260 0.45
48 12 0.02
49 137 0.24
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:93759460 original size:1 final size:1
Alignment explanation
Indices: 93759456--93759481 Score: 52
Period size: 1 Copynumber: 26.0 Consensus size: 1
93759446 GAAAAACGGG
93759456 AAAAAAAAAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAA
93759482 GGAACCTCGA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 25 1.00
ACGTcount: A:1.00, C:0.00, G:0.00, T:0.00
Consensus pattern (1 bp):
A
Found at i:93765203 original size:15 final size:15
Alignment explanation
Indices: 93765183--93765213 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
93765173 AGAATATGTT
93765183 AATGTGTTATGCTTG
1 AATGTGTTATGCTTG
*
93765198 AATGTGTTATGGTTG
1 AATGTGTTATGCTTG
93765213 A
1 A
93765214 TTGATGGTTG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.23, C:0.03, G:0.29, T:0.45
Consensus pattern (15 bp):
AATGTGTTATGCTTG
Found at i:93765243 original size:85 final size:85
Alignment explanation
Indices: 93765100--93765276 Score: 281
Period size: 85 Copynumber: 2.1 Consensus size: 85
93765090 GCATCCATAC
93765100 AATGTGTTATGCTTGAATGTTGTTATGGTTGATTAGGTGATGAGTGGGAGGATGGCATGTATGTT
1 AATGTGTTATGCTTGAATGTTGTTATGGTTGATTAGGTGATGAGTGGGAGGATGGCATGTATGTT
93765165 TGGAGTGTAGAAT-ATG-TT
66 TGGAGTGTAGAATCATGATT
93765183 AATGTGTTATGCTTGAATG-TGTTATGGTTGATTGATGGTTGATGAGT-GGACGGATGGCATGTA
1 AATGTGTTATGCTTGAATGTTGTTATGGTTGATT-A-GG-TGATGAGTGGGA-GGATGGCATGTA
93765246 TGTTTGGAGTGTAGAATCATGATT
62 TGTTTGGAGTGTAGAATCATGATT
*
93765270 CATGTGT
1 AATGTGT
93765277 ATACAATAAA
Statistics
Matches: 87, Mismatches: 1, Indels: 8
0.91 0.01 0.08
Matches are distributed among these distances:
82 14 0.16
83 20 0.23
84 5 0.06
85 37 0.43
86 3 0.03
87 8 0.09
ACGTcount: A:0.23, C:0.04, G:0.34, T:0.40
Consensus pattern (85 bp):
AATGTGTTATGCTTGAATGTTGTTATGGTTGATTAGGTGATGAGTGGGAGGATGGCATGTATGTT
TGGAGTGTAGAATCATGATT
Found at i:93769999 original size:46 final size:46
Alignment explanation
Indices: 93769932--93770057 Score: 225
Period size: 46 Copynumber: 2.7 Consensus size: 46
93769922 TAACCCGCCC
* * *
93769932 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
93769978 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
93770024 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
93770058 TGCTCAACCA
Statistics
Matches: 77, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
46 77 1.00
ACGTcount: A:0.29, C:0.28, G:0.22, T:0.21
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
Found at i:93770076 original size:46 final size:45
Alignment explanation
Indices: 93769934--93770076 Score: 146
Period size: 46 Copynumber: 3.1 Consensus size: 45
93769924 ACCCGCCCTA
* ** * *
93769934 AGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTC-GCATCCAT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCACCATCC-T
*** *
93769979 AAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTC-GCATCCAT
1 -AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCACCATCC-T
93770025 AAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCCT
1 -AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTC-ACCATCCT
93770072 AGTGA
1 AGTGA
93770077 CATGTCACTT
Statistics
Matches: 88, Mismatches: 7, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
46 82 0.93
47 1 0.01
48 5 0.06
ACGTcount: A:0.29, C:0.29, G:0.22, T:0.21
Consensus pattern (45 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCACCATCCT
Found at i:93777479 original size:46 final size:46
Alignment explanation
Indices: 93777412--93777633 Score: 308
Period size: 46 Copynumber: 4.8 Consensus size: 46
93777402 TGTAACCCGC
* * *
93777412 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
93777458 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
* * *
93777508 --TTCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
93777551 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
93777597 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
93777634 TGCTCAAGCA
Statistics
Matches: 156, Mismatches: 11, Indels: 18
0.84 0.06 0.10
Matches are distributed among these distances:
42 2 0.01
43 4 0.03
44 1 0.01
45 2 0.01
46 110 0.71
47 29 0.19
48 2 0.01
49 1 0.01
50 3 0.02
51 2 0.01
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:93778089 original size:30 final size:30
Alignment explanation
Indices: 93778055--93778114 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
93778045 ATTTAATACG
93778055 AACTTTAGAAAAATTACACTTTTGCCCCTA
1 AACTTTAGAAAAATTACACTTTTGCCCCTA
* * *
93778085 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTAGAAAAATTACACTTTTGCCCCTA
93778115 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.32, C:0.25, G:0.07, T:0.37
Consensus pattern (30 bp):
AACTTTAGAAAAATTACACTTTTGCCCCTA
Found at i:93784001 original size:49 final size:49
Alignment explanation
Indices: 93783828--93784059 Score: 311
Period size: 49 Copynumber: 4.7 Consensus size: 49
93783818 TCTATTGTGA
* * * * *
93783828 GGTCACATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCTGAAAACTGT
1 GGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAA-T-T
* * * * **
93783879 GATCACGTGTGTAGTACTAAGTGCAGGCTACTACATGTATCAGATGGTT
1 GGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT
*
93783928 AGGTCACGTGTGTAGTACTAAGTGCAGGCTATTACGTGTACCGGATAATT
1 -GGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT
93783978 GGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT
1 GGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT
* *
93784027 GGTCACATGTGTAGTACTATGTGCAGGCTACTA
1 GGTCACGTGTGTAGTACTAAGTGCAGGCTACTA
93784060 TGCGTACCAG
Statistics
Matches: 160, Mismatches: 20, Indels: 4
0.87 0.11 0.02
Matches are distributed among these distances:
49 80 0.50
50 43 0.27
51 37 0.23
ACGTcount: A:0.26, C:0.18, G:0.27, T:0.29
Consensus pattern (49 bp):
GGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT
Found at i:93786725 original size:42 final size:42
Alignment explanation
Indices: 93786664--93786777 Score: 156
Period size: 43 Copynumber: 2.7 Consensus size: 42
93786654 ACTAAGATTA
*
93786664 CGTGTAAGACCATATCTGGGATTTGGCATCTATACGAGACTT
1 CGTGTAAGACCATATCTGGGATTTGGCATCGATACGAGACTT
* * *
93786706 CGTGTAAGACCATAGCTGGGCTATTGGCATCGATACGAGATTT
1 CGTGTAAGACCATATCTGGGAT-TTGGCATCGATACGAGACTT
* * *
93786749 CATGTAAGACCATATATGGGATATGGCAT
1 CGTGTAAGACCATATCTGGGATTTGGCAT
93786778 TGGTATGGTA
Statistics
Matches: 62, Mismatches: 9, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
42 26 0.42
43 36 0.58
ACGTcount: A:0.28, C:0.18, G:0.25, T:0.29
Consensus pattern (42 bp):
CGTGTAAGACCATATCTGGGATTTGGCATCGATACGAGACTT
Found at i:93793121 original size:42 final size:42
Alignment explanation
Indices: 93793054--93793173 Score: 152
Period size: 43 Copynumber: 2.8 Consensus size: 42
93793044 CGGGTTACTA
* * *
93793054 AGATTACGTGTAAGACCATATCTGGGATTTGGCATCTATACG
1 AGATTTCGTGTAAGACCATATCTGGGATATGGCATCGATACG
* * *
93793096 AGACTTT-GTGTAAGACCATAGCTGGGCTACTAGCATCGATACG
1 AGA-TTTCGTGTAAGACCATATCTGGGATA-TGGCATCGATACG
*
93793139 AGATTTCATGTAAGACCATATCTGGGATATGGCAT
1 AGATTTCGTGTAAGACCATATCTGGGATATGGCAT
93793174 TGGTATGGTA
Statistics
Matches: 65, Mismatches: 10, Indels: 6
0.80 0.12 0.07
Matches are distributed among these distances:
42 30 0.46
43 35 0.54
ACGTcount: A:0.29, C:0.17, G:0.24, T:0.29
Consensus pattern (42 bp):
AGATTTCGTGTAAGACCATATCTGGGATATGGCATCGATACG
Found at i:93802626 original size:20 final size:20
Alignment explanation
Indices: 93802601--93802668 Score: 84
Period size: 20 Copynumber: 3.4 Consensus size: 20
93802591 GCTTGTACAG
* *
93802601 TGGTGCCTCTATTTGCAGTT
1 TGGTGCCTCTGTTTGCACTT
93802621 TGGTGCCTCTGTCTT-CACTT
1 TGGTGCCTCTGT-TTGCACTT
* *
93802641 TGGCGCCTCTGCTTGCACTT
1 TGGTGCCTCTGTTTGCACTT
93802661 TGGTGCCT
1 TGGTGCCT
93802669 TCGATTGCAC
Statistics
Matches: 41, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
19 2 0.05
20 37 0.90
21 2 0.05
ACGTcount: A:0.06, C:0.28, G:0.25, T:0.41
Consensus pattern (20 bp):
TGGTGCCTCTGTTTGCACTT
Found at i:93805883 original size:46 final size:46
Alignment explanation
Indices: 93805831--93806144 Score: 187
Period size: 46 Copynumber: 6.7 Consensus size: 46
93805821 TGATATGTGT
93805831 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCACATTATGAGA
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCACATTATGAGA
*
93805877 GCCAGTGTAAGACCATGTCTGGGACATGGCATCAG---CATTGA-GACGA
1 GCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCACATT-ATGA-GA
* * * * *** *
93805923 GTGCTAGTGTAAGACATGTCTAGGACATACATCGGCCTCGGGACGTA-A
1 --GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCACATTATG-AGA
** * *
93805971 GCCAGTGTAAGACATGTCTAAGACATGCATCGGCTACA--A-GATA
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCACATTATGAGA
* * * * * *
93806014 TGTCAGTGTAAGACCATGTTTGGGACATGGCGTCGG-CACGAATATGTGT
1 -GCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCAC-ATTATGAGA
* ** * ** *
93806063 GCTAGTGTAAGACATGTCTAAGACATGCATCAGCCACATCGTGAAA
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCACATTATGAGA
* * *
93806109 GCTAGTTTAAGACCATGTCTGAGACATGGCATCGGC
1 GCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGC
93806145 TTGATATGTG
Statistics
Matches: 207, Mismatches: 39, Indels: 42
0.72 0.14 0.15
Matches are distributed among these distances:
42 1 0.00
43 2 0.01
44 12 0.06
45 19 0.09
46 78 0.38
47 54 0.26
48 37 0.18
49 3 0.01
50 1 0.00
ACGTcount: A:0.29, C:0.21, G:0.28, T:0.23
Consensus pattern (46 bp):
GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCACATTATGAGA
Found at i:93806081 original size:138 final size:137
Alignment explanation
Indices: 93805831--93806178 Score: 366
Period size: 138 Copynumber: 2.5 Consensus size: 137
93805821 TGATATGTGT
* * * *
93805831 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCACATTATGAGA-GCCAGTGTAAGACCATGT
1 GCCAGTGTAAGACATGTCTGAGACATGCATCGGCTACA--A-GATATGTCAGTGTAAGACCATGT
* * *
93805895 CTGGGACATGGCATCAGCATTGAGACGAGTGCTAGTGTAAGACATGTCTAGGACATACATCGGCC
63 CTGGGACATGGCATCAGCATCGAGACGAGTGCTAGTGTAAGACATGTCTAAGACATACATCAGCC
*
93805960 TCGGGA-CGT-AA
128 AC---ATCGTAAA
* *
93805971 GCCAGTGTAAGACATGTCTAAGACATGCATCGGCTACAAGATATGTCAGTGTAAGACCATGTTTG
1 GCCAGTGTAAGACATGTCTGAGACATGCATCGGCTACAAGATATGTCAGTGTAAGACCATGTCTG
* * * * * *
93806036 GGACATGGCGTCGGCA-CGAATATGTGTGCTAGTGTAAGACATGTCTAAGACATGCATCAGCCAC
66 GGACATGGCATCAGCATCG-AGACGAGTGCTAGTGTAAGACATGTCTAAGACATACATCAGCCAC
93806100 ATCGTGAAA
130 ATCGT-AAA
* * ** * *
93806109 GCTAGTTTAAGACCATGTCTGAGACATGGCATCGGCT-TGATATGTGTCAGTGTAAGACC-TGTC
1 GCCAGTGTAAGA-CATGTCTGAGACAT-GCATCGGCTACAAGATATGTCAGTGTAAGACCATGTC
93806172 TGGGACA
64 TGGGACA
93806179 CAGCATTGAC
Statistics
Matches: 177, Mismatches: 24, Indels: 16
0.82 0.11 0.07
Matches are distributed among these distances:
135 1 0.01
136 3 0.02
137 4 0.02
138 94 0.53
139 31 0.18
140 44 0.25
ACGTcount: A:0.28, C:0.20, G:0.28, T:0.24
Consensus pattern (137 bp):
GCCAGTGTAAGACATGTCTGAGACATGCATCGGCTACAAGATATGTCAGTGTAAGACCATGTCTG
GGACATGGCATCAGCATCGAGACGAGTGCTAGTGTAAGACATGTCTAAGACATACATCAGCCACA
TCGTAAA
Found at i:93811307 original size:43 final size:46
Alignment explanation
Indices: 93811246--93811379 Score: 166
Period size: 43 Copynumber: 2.9 Consensus size: 46
93811236 GAAATTATAA
*
93811246 ATCCGAACTCGTTGAGTGGTCCGAGTTCATTATGGATGTG-A-G-C
1 ATCCGAGCTCGTTGAGTGGTCCGAGTTCATTATGGATGTGCATGAC
*
93811289 ATCCGAGCTCGTTGAGTGGTCCGAGTTCATGATGGATGCAATGCATGTAAC
1 ATCCGAGCTCGTTGAGTGGTCCGAGTTCATTATGGATG---TGCATG--AC
* *
93811340 ATCCTAGCTCGTTGAGTGGTCCGAGTTCGTTATGGATGTG
1 ATCCGAGCTCGTTGAGTGGTCCGAGTTCATTATGGATGTG
93811380 TTACATTATA
Statistics
Matches: 78, Mismatches: 5, Indels: 11
0.83 0.05 0.12
Matches are distributed among these distances:
43 36 0.46
46 2 0.03
47 1 0.01
48 3 0.04
51 36 0.46
ACGTcount: A:0.20, C:0.19, G:0.31, T:0.31
Consensus pattern (46 bp):
ATCCGAGCTCGTTGAGTGGTCCGAGTTCATTATGGATGTGCATGAC
Found at i:93811400 original size:20 final size:22
Alignment explanation
Indices: 93811375--93811419 Score: 67
Period size: 20 Copynumber: 2.1 Consensus size: 22
93811365 TTCGTTATGG
93811375 ATGTGTTACAT-TATAT-GAAA
1 ATGTGTTACATGTATATGGAAA
93811395 ATGTGTTACATGGTATATGGAAA
1 ATGTGTTACAT-GTATATGGAAA
93811418 AT
1 AT
93811420 TGAATTGGAT
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
20 11 0.50
22 5 0.23
23 6 0.27
ACGTcount: A:0.38, C:0.04, G:0.20, T:0.38
Consensus pattern (22 bp):
ATGTGTTACATGTATATGGAAA
Found at i:93815069 original size:27 final size:28
Alignment explanation
Indices: 93814989--93815080 Score: 123
Period size: 27 Copynumber: 3.3 Consensus size: 28
93814979 AGATTGGCAG
* * * *
93814989 TAAGTGTGCGGGTTTAAATTGTACAGCAC
1 TAAGTGTGCGAGTTT-GATTATATAGCAC
93815018 TAAGTGTGCGAGTTTGATTATATAGCAC
1 TAAGTGTGCGAGTTTGATTATATAGCAC
93815046 TAAGTGTGCGAG-TTGATTATATAGCAC
1 TAAGTGTGCGAGTTTGATTATATAGCAC
*
93815073 TGAGTGTG
1 TAAGTGTG
93815081 TGGACTTAAT
Statistics
Matches: 58, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
27 22 0.38
28 22 0.38
29 14 0.24
ACGTcount: A:0.27, C:0.11, G:0.28, T:0.34
Consensus pattern (28 bp):
TAAGTGTGCGAGTTTGATTATATAGCAC
Found at i:93815095 original size:29 final size:27
Alignment explanation
Indices: 93815013--93815096 Score: 87
Period size: 27 Copynumber: 3.0 Consensus size: 27
93815003 TAAATTGTAC
* *
93815013 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGA-CTTAATTATAT
* *
93815041 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGACTTAATTATAT
* *
93815068 AGCACTGAGTGTGTGGACTTAATATATAT
1 AGCACTAAGTGTG-CGACTTAAT-TATAT
93815097 TTTGAATCAC
Statistics
Matches: 49, Mismatches: 5, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
27 22 0.45
28 22 0.45
29 5 0.10
ACGTcount: A:0.30, C:0.11, G:0.25, T:0.35
Consensus pattern (27 bp):
AGCACTAAGTGTGCGACTTAATTATAT
Found at i:93823114 original size:27 final size:28
Alignment explanation
Indices: 93823030--93823127 Score: 135
Period size: 27 Copynumber: 3.5 Consensus size: 28
93823020 CATGAGATTG
* * * *
93823030 GCACTAAGTGTGCGGGTTTAAATTGTACA
1 GCACTAAGTGTGCGAGTTT-GATTATATA
93823059 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
93823087 GCACTAAGTGTGCGAG-TTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
93823114 GCACTGAGTGTGCG
1 GCACTAAGTGTGCG
93823128 GACTTAATAT
Statistics
Matches: 64, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
27 24 0.38
28 22 0.34
29 18 0.28
ACGTcount: A:0.27, C:0.13, G:0.29, T:0.32
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:93823138 original size:27 final size:27
Alignment explanation
Indices: 93823058--93823139 Score: 94
Period size: 27 Copynumber: 3.0 Consensus size: 27
93823048 TAAATTGTAC
* *
93823058 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGA-CTTGAATATAT
* *
93823086 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGACTTGAATATAT
*
93823113 AGCACTGAGTGTGCGGACTT-AATATAT
1 AGCACTAAGTGTGC-GACTTGAATATAT
93823140 TTTTGAATCA
Statistics
Matches: 49, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
27 29 0.59
28 20 0.41
ACGTcount: A:0.29, C:0.12, G:0.26, T:0.33
Consensus pattern (27 bp):
AGCACTAAGTGTGCGACTTGAATATAT
Found at i:93827158 original size:40 final size:39
Alignment explanation
Indices: 93827075--93827258 Score: 219
Period size: 40 Copynumber: 4.6 Consensus size: 39
93827065 TTGAATGATG
* * * *
93827075 TCCGGGCTAAGTCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCGAAGGCATTTGTGC-GAGTTACTAAA
* * *
93827114 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCGAAGGCATTTGTGCGAGTTACTAAA
*
93827154 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAAA
*
93827193 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGT-CCGAAGGCATTTGTGCGAGTTACTA-AA
*
93827234 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGT-CCGAAGGCATTTG
93827259 AACGAGTAGC
Statistics
Matches: 126, Mismatches: 15, Indels: 7
0.85 0.10 0.05
Matches are distributed among these distances:
39 45 0.36
40 72 0.57
41 9 0.07
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (39 bp):
TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:93827210 original size:79 final size:80
Alignment explanation
Indices: 93827075--93827258 Score: 223
Period size: 79 Copynumber: 2.3 Consensus size: 80
93827065 TTGAATGATG
* *
93827075 TCCGGGCTAAGTCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATTT
1 TCCGGGCTAAGCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATTT
93827139 GTGCGAGATACTA-A
66 GTGCGAGATACTATA
* * * **
93827153 TTCCGGGCTAAGCCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCAT
1 -TCCGGGCTAAGCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCAT
*
93827216 TTGTGCGAGTTACTATA
64 TTGTGCGAGATACTATA
* *
93827233 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAG-CCCGAAGGCATTTG
93827259 AACGAGTAGC
Statistics
Matches: 91, Mismatches: 10, Indels: 7
0.84 0.09 0.06
Matches are distributed among these distances:
78 1 0.01
79 68 0.75
80 22 0.24
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (80 bp):
TCCGGGCTAAGCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATTT
GTGCGAGATACTATA
Found at i:93827280 original size:79 final size:79
Alignment explanation
Indices: 93827127--93827291 Score: 210
Period size: 79 Copynumber: 2.1 Consensus size: 79
93827117 GGACTAAGAT
* **
93827127 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
*
93827192 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* *
93827206 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCATTTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTTA-C
* *
93827269 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
93827285 CCGAAGG
1 CCGAAGG
93827292 TACGTGATTT
Statistics
Matches: 75, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
78 2 0.03
79 48 0.64
80 25 0.33
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:93832854 original size:30 final size:31
Alignment explanation
Indices: 93832830--93832888 Score: 84
Period size: 30 Copynumber: 1.9 Consensus size: 31
93832820 GTAAATACTC
* *
93832830 AAAATTTGAGGGATTAA-AGTGTAAATATGA
1 AAAATTTGAAGGACTAATAGTGTAAATATGA
*
93832860 AAAATTTGAAGGACTAATAGTGCAAATAT
1 AAAATTTGAAGGACTAATAGTGTAAATAT
93832889 TTTAAGGGTG
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
30 15 0.60
31 10 0.40
ACGTcount: A:0.47, C:0.03, G:0.20, T:0.29
Consensus pattern (31 bp):
AAAATTTGAAGGACTAATAGTGTAAATATGA
Found at i:93833151 original size:8 final size:8
Alignment explanation
Indices: 93833140--93833164 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
93833130 TTTAACAAGA
93833140 TATTTTAT
1 TATTTTAT
93833148 TATTTTAT
1 TATTTTAT
93833156 TATTTTAT
1 TATTTTAT
93833164 T
1 T
93833165 TAGTCTATAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (8 bp):
TATTTTAT
Found at i:93841279 original size:39 final size:39
Alignment explanation
Indices: 93841229--93841354 Score: 180
Period size: 39 Copynumber: 3.2 Consensus size: 39
93841219 GACTTAATGT
* *
93841229 CTAGCAAGCCTCGTGCCGGTGATAAATTCAGGTTTATAA
1 CTAGCAGGCCTCGTGCCGGTGATAAATTCAGGTTTATAC
* * *
93841268 CTAGCAGGCCTCATACCGATGATAAATTCAGGTTTATAC
1 CTAGCAGGCCTCGTGCCGGTGATAAATTCAGGTTTATAC
* * *
93841307 CTAGCAGGCCTCGTGCCGGTGTTAAGTTCGGGTTTATAC
1 CTAGCAGGCCTCGTGCCGGTGATAAATTCAGGTTTATAC
93841346 CTAGCAGGC
1 CTAGCAGGC
93841355 AAATTGCCGA
Statistics
Matches: 76, Mismatches: 11, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
39 76 1.00
ACGTcount: A:0.25, C:0.23, G:0.25, T:0.28
Consensus pattern (39 bp):
CTAGCAGGCCTCGTGCCGGTGATAAATTCAGGTTTATAC
Found at i:93846884 original size:31 final size:31
Alignment explanation
Indices: 93846849--93846911 Score: 126
Period size: 31 Copynumber: 2.0 Consensus size: 31
93846839 ATAAGGTATG
93846849 TAAGAAATATCTTTTGGTAGTTAAGGGTCAT
1 TAAGAAATATCTTTTGGTAGTTAAGGGTCAT
93846880 TAAGAAATATCTTTTGGTAGTTAAGGGTCAT
1 TAAGAAATATCTTTTGGTAGTTAAGGGTCAT
93846911 T
1 T
93846912 GCTTTTTGTC
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.32, C:0.06, G:0.22, T:0.40
Consensus pattern (31 bp):
TAAGAAATATCTTTTGGTAGTTAAGGGTCAT
Found at i:93847450 original size:20 final size:20
Alignment explanation
Indices: 93847412--93847450 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 20
93847402 TCAAGTTGGT
93847412 CACACGGGCATGTTGCCCTTC
1 CACACGGG-ATGTTGCCCTTC
93847433 CACACGGG-TGTGTGCCCT
1 CACACGGGATGT-TGCCCT
93847451 GTTTTAAGGA
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 3 0.18
20 6 0.35
21 8 0.47
ACGTcount: A:0.13, C:0.36, G:0.28, T:0.23
Consensus pattern (20 bp):
CACACGGGATGTTGCCCTTC
Found at i:93850358 original size:24 final size:24
Alignment explanation
Indices: 93850313--93850358 Score: 67
Period size: 24 Copynumber: 1.9 Consensus size: 24
93850303 TTTCTTATGT
*
93850313 GGAGAAATAAGGAAGATGAGAGAA
1 GGAGAAATAAGGAAAATGAGAGAA
93850337 GGAGAAATAAGGAGAAAT-AGAG
1 GGAGAAATAAGGA-AAATGAGAG
93850359 TGAAATAGGA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
24 17 0.85
25 3 0.15
ACGTcount: A:0.54, C:0.00, G:0.37, T:0.09
Consensus pattern (24 bp):
GGAGAAATAAGGAAAATGAGAGAA
Found at i:93852248 original size:46 final size:46
Alignment explanation
Indices: 93852196--93852366 Score: 186
Period size: 46 Copynumber: 3.7 Consensus size: 46
93852186 TCATCTCATA
93852196 GCCGATGCATGTCCCAGACATGTCTTACACTGGCTTATGTCTTGAG
1 GCCGATGCATGTCCCAGACATGTCTTACACTGGCTTATGTCTTGAG
* ** *
93852242 GCCGATGCATGTCCCAGACATGTCTTACACTAGC-TATCGTCTCAAT
1 GCCGATGCATGTCCCAGACATGTCTTACACTGGCTTAT-GTCTTGAG
* ** *
93852288 GCCGATGCCATGTCCTAGACATGGTCTTACACTGGCTCTCA--TAATGTG
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTGGCT-T-ATGTCTTGAG
* *
93852336 GTCGATGCATGTCCCAGATATGTCTTACACT
1 GCCGATGCATGTCCCAGACATGTCTTACACT
93852367 AGCTCACAAA
Statistics
Matches: 104, Mismatches: 15, Indels: 12
0.79 0.11 0.09
Matches are distributed among these distances:
45 3 0.03
46 55 0.53
47 25 0.24
48 19 0.18
50 1 0.01
51 1 0.01
ACGTcount: A:0.22, C:0.27, G:0.21, T:0.30
Consensus pattern (46 bp):
GCCGATGCATGTCCCAGACATGTCTTACACTGGCTTATGTCTTGAG
Found at i:93852347 original size:94 final size:91
Alignment explanation
Indices: 93852183--93852370 Score: 245
Period size: 94 Copynumber: 2.0 Consensus size: 91
93852173 CTTAGACTGA
**
93852183 CTATCATCTCATAGCCGATGCATGTCCCAGACATGTCTTACACTGGCTTATGTCTTGAGGCCGAT
1 CTATCATCTCATAGCCGATGCATGTCCCAGACATGTCTTACACTGGCTTA-GTAATGAGGCCGAT
93852248 GCATGTCCCAGACATGTCTTACACTAG
65 GCATGTCCCAGACATGTCTTACACTAG
* * * *
93852275 CTATCGTCTCA-ATGCCGATGCCATGTCCTAGACATGGTCTTACACTGGCTCTCA-TAATGTGGT
1 CTATCATCTCATA-GCCGATG-CATGTCCCAGACAT-GTCTTACACTGGCT-T-AGTAATGAGGC
*
93852338 CGATGCATGTCCCAGATATGTCTTACACTAG
61 CGATGCATGTCCCAGACATGTCTTACACTAG
93852369 CT
1 CT
93852371 CACAAACAAA
Statistics
Matches: 84, Mismatches: 7, Indels: 8
0.85 0.07 0.08
Matches are distributed among these distances:
91 1 0.01
92 17 0.20
93 13 0.15
94 51 0.61
95 1 0.01
96 1 0.01
ACGTcount: A:0.22, C:0.28, G:0.20, T:0.30
Consensus pattern (91 bp):
CTATCATCTCATAGCCGATGCATGTCCCAGACATGTCTTACACTGGCTTAGTAATGAGGCCGATG
CATGTCCCAGACATGTCTTACACTAG
Found at i:93852747 original size:30 final size:30
Alignment explanation
Indices: 93852702--93852759 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 30
93852692 AAATTCACAT
* * *
93852702 CTTTGGTAAATTGACCATTTTGCCCCTAAA
1 CTTTGGCAAAATGACCATTTTACCCCTAAA
93852732 CTTTGGCAAAATGACCATTTTACCCCTA
1 CTTTGGCAAAATGACCATTTTACCCCTA
93852760 TGCTCGAAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.28, C:0.26, G:0.12, T:0.34
Consensus pattern (30 bp):
CTTTGGCAAAATGACCATTTTACCCCTAAA
Found at i:93854584 original size:37 final size:37
Alignment explanation
Indices: 93854534--93854612 Score: 113
Period size: 37 Copynumber: 2.1 Consensus size: 37
93854524 TTATTACGAA
* * * *
93854534 GTCTTACCCGGACATAATCTCTACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
*
93854571 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
93854608 GTCTT
1 GTCTT
93854613 TAGAGCTCGG
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.25, C:0.30, G:0.19, T:0.25
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:93854805 original size:49 final size:49
Alignment explanation
Indices: 93854731--93854973 Score: 363
Period size: 47 Copynumber: 5.1 Consensus size: 49
93854721 CCCTTCGGGA
* * * * *
93854731 CTTATCACAT-T-TATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * * *
93854778 CCTGTCACATATATATACACTTCCACATTCATCACATTGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
93854827 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
93854874 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
93854921 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
93854970 CTTA
1 CTTA
93854974 CTATCATTTC
Statistics
Matches: 181, Mismatches: 11, Indels: 6
0.91 0.06 0.03
Matches are distributed among these distances:
47 100 0.55
48 1 0.01
49 80 0.44
ACGTcount: A:0.28, C:0.30, G:0.09, T:0.32
Consensus pattern (49 bp):
CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:93854935 original size:96 final size:97
Alignment explanation
Indices: 93854731--93854973 Score: 361
Period size: 96 Copynumber: 2.5 Consensus size: 97
93854721 CCCTTCGGGA
* * * * * * *
93854731 CTTATCACAT-T-TATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCACATATATAT
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACA-ATATAT
*
93854794 ACACTTCCACATTCATCACATTGGCCATTAGGC
65 ACACTTCCACATTCATCACATCGGCCATTAGGC
93854827 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC-ATATATA
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACAATATATA
*
93854889 CACTTTCACATTCATCACATCGGCCATTAGGC
66 CACTTCCACATTCATCACATCGGCCATTAGGC
93854921 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
93854974 CTATCATTTC
Statistics
Matches: 134, Mismatches: 9, Indels: 8
0.89 0.06 0.05
Matches are distributed among these distances:
94 45 0.34
95 1 0.01
96 88 0.66
ACGTcount: A:0.28, C:0.30, G:0.09, T:0.32
Consensus pattern (97 bp):
CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACAATATATA
CACTTCCACATTCATCACATCGGCCATTAGGC
Found at i:93858830 original size:40 final size:40
Alignment explanation
Indices: 93858770--93858869 Score: 155
Period size: 40 Copynumber: 2.5 Consensus size: 40
93858760 GCATGATTGA
* * *
93858770 TCTTCGGGATTTAGCACGGATATATCACTAGCACGAATGC
1 TCTTCGGGACTTAGCCCGGATACATCACTAGCACGAATGC
* *
93858810 TCTTCGGAACTTAGCCCGGATACATCACTAGCATGAATGC
1 TCTTCGGGACTTAGCCCGGATACATCACTAGCACGAATGC
93858850 TCTTCGGGACTTAGCCCGGA
1 TCTTCGGGACTTAGCCCGGA
93858870 CATCATTCGA
Statistics
Matches: 54, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
40 54 1.00
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (40 bp):
TCTTCGGGACTTAGCCCGGATACATCACTAGCACGAATGC
Found at i:93859216 original size:29 final size:29
Alignment explanation
Indices: 93859182--93859253 Score: 92
Period size: 29 Copynumber: 2.5 Consensus size: 29
93859172 ATCAACCACG
* *
93859182 CACACTTAGTGCCATGTACTTT-AAACTCA
1 CACACTTAGTGCCATGCA-TTTCAAACCCA
* *
93859211 CACACTTAGTGCCATGCATTTCAAGCCCG
1 CACACTTAGTGCCATGCATTTCAAACCCA
93859240 CACACTTAGTGCCA
1 CACACTTAGTGCCA
93859254 ATCTCACAAC
Statistics
Matches: 38, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
28 3 0.08
29 35 0.92
ACGTcount: A:0.28, C:0.32, G:0.14, T:0.26
Consensus pattern (29 bp):
CACACTTAGTGCCATGCATTTCAAACCCA
Found at i:93859296 original size:43 final size:43
Alignment explanation
Indices: 93859235--93859378 Score: 288
Period size: 43 Copynumber: 3.3 Consensus size: 43
93859225 TGCATTTCAA
93859235 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
1 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
93859278 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
1 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
93859321 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
1 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
93859364 GCCCGCACACTTAGT
1 GCCCGCACACTTAGT
93859379 ACTGAAAACC
Statistics
Matches: 101, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 101 1.00
ACGTcount: A:0.27, C:0.35, G:0.15, T:0.23
Consensus pattern (43 bp):
GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
Found at i:93861513 original size:47 final size:47
Alignment explanation
Indices: 93861435--93861767 Score: 562
Period size: 47 Copynumber: 7.1 Consensus size: 47
93861425 CCCTTCGGGA
* * * * * *
93861435 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
93861482 CTGTCA-CATATATATACAC-TTCACATTCATCACATCGGCCATTAGGC
1 CT-T-ATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
93861529 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
93861576 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
93861623 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
93861670 CTTATCACATATATATACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
93861717 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
93861764 CTTA
1 CTTA
93861768 CTATCATTTC
Statistics
Matches: 272, Mismatches: 10, Indels: 8
0.94 0.03 0.03
Matches are distributed among these distances:
45 1 0.00
46 13 0.05
47 245 0.90
48 12 0.04
49 1 0.00
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:93866004 original size:59 final size:59
Alignment explanation
Indices: 93865912--93866036 Score: 214
Period size: 59 Copynumber: 2.1 Consensus size: 59
93865902 AGTGTTATGA
*
93865912 CCCTAAAGTCAAGTGGTTTTAGAAAATGAGGTATCGAGACCTTGTTTTTATAAATCAAG
1 CCCTAAAGTCAAGTGGTTTTAGAAAATGAGGTATCGAGACCTCGTTTTTATAAATCAAG
* *
93865971 CCCTATAGTCAAGTGGTTTTAGAAAATGAGGTATTGAGACCTCGTTTTTATAAATCAAG
1 CCCTAAAGTCAAGTGGTTTTAGAAAATGAGGTATCGAGACCTCGTTTTTATAAATCAAG
*
93866030 CCGTAAA
1 CCCTAAA
93866037 TATTTTATTA
Statistics
Matches: 61, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
59 61 1.00
ACGTcount: A:0.34, C:0.14, G:0.20, T:0.32
Consensus pattern (59 bp):
CCCTAAAGTCAAGTGGTTTTAGAAAATGAGGTATCGAGACCTCGTTTTTATAAATCAAG
Found at i:93868871 original size:34 final size:33
Alignment explanation
Indices: 93868808--93868878 Score: 90
Period size: 34 Copynumber: 2.1 Consensus size: 33
93868798 TCAGTCGCAA
* *
93868808 TATCAGTGTGGGTCTTAGCCCAATACAGTAACAG
1 TATCAATGTGGGCCTTAGCCCAATACAGT-ACAG
*
93868842 TATCAATGTGGGCCTTAGCCC-ATCTCAGTACAG
1 TATCAATGTGGGCCTTAGCCCAAT-ACAGTACAG
93868875 TATC
1 TATC
93868879 TAAAATGCAT
Statistics
Matches: 33, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
33 10 0.30
34 23 0.70
ACGTcount: A:0.27, C:0.24, G:0.21, T:0.28
Consensus pattern (33 bp):
TATCAATGTGGGCCTTAGCCCAATACAGTACAG
Found at i:93887342 original size:46 final size:46
Alignment explanation
Indices: 93887292--93887464 Score: 201
Period size: 46 Copynumber: 3.7 Consensus size: 46
93887282 TGGTTGAGCA
93887292 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * *
93887338 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--AATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
* *
93887383 CATCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
93887431 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
93887465 GGGGCAGGTT
Statistics
Matches: 105, Mismatches: 13, Indels: 18
0.77 0.10 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
45 3 0.03
46 60 0.57
47 28 0.27
48 3 0.03
50 3 0.03
51 2 0.02
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:93887448 original size:93 final size:93
Alignment explanation
Indices: 93887289--93887459 Score: 306
Period size: 93 Copynumber: 1.8 Consensus size: 93
93887279 GGATGGTTGA
* *
93887289 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
93887354 TGAGTCCGAGTTCGTGAAATGTAACTAG
66 TGAGTCCGAGTTCGTGAAATGTAACTAG
* *
93887382 GCATCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
93887447 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
93887460 ACTTAGGGGC
Statistics
Matches: 74, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.22, C:0.21, G:0.29, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAAATGTAACTAG
Found at i:93899003 original size:40 final size:40
Alignment explanation
Indices: 93898820--93899003 Score: 173
Period size: 39 Copynumber: 4.7 Consensus size: 40
93898810 GCTACTCGTT
* * *
93898820 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTAGCA
* * * * *
93898860 CAAATGCCTTC-GAACTTAACCCGAATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTAGCA
* *
93898899 CCAATGCCTTCGGG-CTTAGCCCGGA-ATTAGTATCTCA-CA
1 CAAATGCCTTCGGGACTTAGCCCGGATA-TAGTAACT-AGCA
* * *
93898938 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATATAGTAAC-TAGCA
93898979 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
93899004 CATCATTCGA
Statistics
Matches: 116, Mismatches: 19, Indels: 18
0.76 0.12 0.12
Matches are distributed among these distances:
38 2 0.02
39 60 0.52
40 43 0.37
41 11 0.09
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTAGCA
Found at i:93901201 original size:26 final size:26
Alignment explanation
Indices: 93901151--93901220 Score: 92
Period size: 26 Copynumber: 2.8 Consensus size: 26
93901141 CCTCTTTAAT
**
93901151 AACT-GGG-AAAGCCC-TTTTCGGTA
1 AACTGGGGCAAAGCCCTTTTTCAATA
93901174 AACTGGGGCAAAGCCCTTTTTCAATA
1 AACTGGGGCAAAGCCCTTTTTCAATA
93901200 AACTGGGGCATAAGCCCTTTT
1 AACTGGGGCA-AAGCCCTTTT
93901221 GCACTTCCTC
Statistics
Matches: 41, Mismatches: 2, Indels: 4
0.87 0.04 0.09
Matches are distributed among these distances:
23 4 0.10
24 3 0.07
25 7 0.17
26 17 0.41
27 10 0.24
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Consensus pattern (26 bp):
AACTGGGGCAAAGCCCTTTTTCAATA
Found at i:93903783 original size:6 final size:6
Alignment explanation
Indices: 93903693--93903762 Score: 131
Period size: 6 Copynumber: 11.7 Consensus size: 6
93903683 ATTTATTTTC
*
93903693 TTTTTA TTTTGA TTTTGA TTTTGA TTTTGA TTTTGA TTTTGA TTTTGA
1 TTTTGA TTTTGA TTTTGA TTTTGA TTTTGA TTTTGA TTTTGA TTTTGA
93903741 TTTTGA TTTTGA TTTTGA TTTT
1 TTTTGA TTTTGA TTTTGA TTTT
93903763 TAGTTTTAGT
Statistics
Matches: 63, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
6 63 1.00
ACGTcount: A:0.16, C:0.00, G:0.14, T:0.70
Consensus pattern (6 bp):
TTTTGA
Found at i:93911781 original size:21 final size:20
Alignment explanation
Indices: 93911753--93911792 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 20
93911743 CAAAACTTGT
*
93911753 ATAACTATCATCAAACATTC
1 ATAACTATAATCAAACATTC
*
93911773 ATAATCTATAATCAATCATT
1 ATAA-CTATAATCAAACATT
93911793 AAAATAAGTG
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 4 0.24
21 13 0.76
ACGTcount: A:0.45, C:0.20, G:0.00, T:0.35
Consensus pattern (20 bp):
ATAACTATAATCAAACATTC
Found at i:93916316 original size:40 final size:40
Alignment explanation
Indices: 93916227--93916332 Score: 108
Period size: 40 Copynumber: 2.7 Consensus size: 40
93916217 TGAGGAATTG
* * * *
93916227 TATCCAGGCTTAAAGACCCCCAGGCTATATGCTGGAATAT
1 TATCCGGGCTTAAAGACCCGCAGGCTATATGCTAGAATAC
* * *
93916267 TATCTGGGCTTAAAGACCCGCAGGCT-TCGTGCTAGAATGC
1 TATCCGGGCTTAAAGACCCGCAGGCTAT-ATGCTAGAATAC
* *
93916307 TATCCGGGC-TAGAGACCCGTAGGCTA
1 TATCCGGGCTTAAAGACCCGCAGGCTA
93916333 CGAGCTGGTA
Statistics
Matches: 54, Mismatches: 10, Indels: 4
0.79 0.15 0.06
Matches are distributed among these distances:
39 15 0.28
40 39 0.72
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.24
Consensus pattern (40 bp):
TATCCGGGCTTAAAGACCCGCAGGCTATATGCTAGAATAC
Found at i:93926316 original size:43 final size:43
Alignment explanation
Indices: 93926251--93926417 Score: 167
Period size: 43 Copynumber: 3.9 Consensus size: 43
93926241 ATCTTGTACA
* * * *
93926251 ATGCC-ATATCCCAGATATGGTCTTACATGTTATCACATATCG
1 ATGCCAATGTCCCAGACATGGTCTTACACGTAATCACATATCG
* ** * * * *
93926293 ATGCCACTGTCCCAGACGGGGTCTTAGACGAAATCATATAACG
1 ATGCCAATGTCCCAGACATGGTCTTACACGTAATCACATATCG
* *
93926336 ATGCCAATGTCCCAGACATGGTCTTACACATAATCACA-ATACA
1 ATGCCAATGTCCCAGACATGGTCTTACACGTAATCACATAT-CG
* * *
93926379 ATGCCAATGTCTCAGACATGGTATTACATGTAATCACAT
1 ATGCCAATGTCCCAGACATGGTCTTACACGTAATCACAT
93926418 CTCGTAATCC
Statistics
Matches: 98, Mismatches: 24, Indels: 4
0.78 0.19 0.03
Matches are distributed among these distances:
42 6 0.06
43 92 0.94
ACGTcount: A:0.32, C:0.25, G:0.16, T:0.27
Consensus pattern (43 bp):
ATGCCAATGTCCCAGACATGGTCTTACACGTAATCACATATCG
Found at i:93928248 original size:21 final size:20
Alignment explanation
Indices: 93928220--93928259 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 20
93928210 CAAAACTTGT
93928220 ATAACTATCATCAAACATTC
1 ATAACTATCATCAAACATTC
*
93928240 ATAATCTATCATCAATCATT
1 ATAA-CTATCATCAAACATT
93928260 AAAATACATA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 4 0.22
21 14 0.78
ACGTcount: A:0.42, C:0.23, G:0.00, T:0.35
Consensus pattern (20 bp):
ATAACTATCATCAAACATTC
Found at i:93929116 original size:12 final size:12
Alignment explanation
Indices: 93929101--93929139 Score: 51
Period size: 12 Copynumber: 3.2 Consensus size: 12
93929091 CCTTTGGGCC
*
93929101 TTTGGTTTTTGT
1 TTTGTTTTTTGT
*
93929113 TTTGTTTTTTAT
1 TTTGTTTTTTGT
*
93929125 TTTATTTTTTGT
1 TTTGTTTTTTGT
93929137 TTT
1 TTT
93929140 CTGCCTTTTC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
12 23 1.00
ACGTcount: A:0.05, C:0.00, G:0.13, T:0.82
Consensus pattern (12 bp):
TTTGTTTTTTGT
Found at i:93931451 original size:33 final size:33
Alignment explanation
Indices: 93931409--93931482 Score: 78
Period size: 33 Copynumber: 2.2 Consensus size: 33
93931399 GATGAATAAT
**
93931409 TTATATAATC-AATTAATATTTTTATATTTAAAA
1 TTATATAATCTAATTAAT-TTGATATATTTAAAA
* *
93931442 TTATTTAATCTAATTCATTTGATATATTTAAATA
1 TTATATAATCTAATTAATTTGATATATTTAAA-A
*
93931476 TTTTATA
1 TTATATA
93931483 TATTAAATAT
Statistics
Matches: 33, Mismatches: 6, Indels: 3
0.79 0.14 0.07
Matches are distributed among these distances:
33 21 0.64
34 12 0.36
ACGTcount: A:0.41, C:0.04, G:0.01, T:0.54
Consensus pattern (33 bp):
TTATATAATCTAATTAATTTGATATATTTAAAA
Found at i:93931483 original size:17 final size:16
Alignment explanation
Indices: 93931423--93931494 Score: 60
Period size: 16 Copynumber: 4.4 Consensus size: 16
93931413 ATAATCAATT
93931423 AATATTTTTATATTTA
1 AATATTTTTATATTTA
*
93931439 AA-ATTATTTA-ATCTA
1 AATATT-TTTATATTTA
* *
93931454 ATTCATTTGATATATTTA
1 AAT-ATTT-TTATATTTA
93931472 AATA-TTTTATATATTA
1 AATATTTTTATAT-TTA
93931488 AATATTT
1 AATATTT
93931495 AAAAAAATAT
Statistics
Matches: 43, Mismatches: 6, Indels: 13
0.69 0.10 0.21
Matches are distributed among these distances:
15 13 0.30
16 16 0.37
17 8 0.19
18 6 0.14
ACGTcount: A:0.40, C:0.03, G:0.01, T:0.56
Consensus pattern (16 bp):
AATATTTTTATATTTA
Found at i:93931981 original size:148 final size:147
Alignment explanation
Indices: 93931670--93931945 Score: 376
Period size: 148 Copynumber: 1.9 Consensus size: 147
93931660 TTTAATATAT
* * * *
93931670 ATACTTTAATTTCTAATATAATTTGATCCTCTATCATTAGTTTGTTTAAATAGTTAAATATTATT
1 ATAC-TTAATTTTTAATATAATTTGATCCTCTATCATTAATTAGTTTAAATAGTTAAATATTAAT
* ***
93931735 AAATATTTCAATAAAATACTTACATTATTTTTTTCTTGAAAACATTATTCTAATAATATGCTAAA
65 AAATATTTCAATAAAATACTTACATTATTTTTTTCTCGAAAACATTATTCTAATAATAAAATAAA
* *
93931800 ATTTAAGATTCAATCTAT
130 ATTTAAGATTAAATCTAA
*
93931818 ATACTTTAATTTTTAATATAATTTGATTCTCTATCATTAATTAGTTTAAATAGTTAAATATTAAT
1 ATAC-TTAATTTTTAATATAATTTGATCCTCTATCATTAATTAGTTTAAATAGTTAAATATTAAT
* *
93931883 AACTATTTCAATGAAAATA-TTGACATTATTTTTTTTCTCGAGAACATTATTCTAATAA-AAAAT
65 AAATATTTCAAT-AAAATACTT-ACATTA-TTTTTTTCTCGAAAACATTATTCTAATAATAAAAT
93931946 TATTTTATCA
Statistics
Matches: 114, Mismatches: 11, Indels: 5
0.88 0.08 0.04
Matches are distributed among these distances:
148 73 0.64
149 14 0.12
150 27 0.24
ACGTcount: A:0.39, C:0.09, G:0.05, T:0.46
Consensus pattern (147 bp):
ATACTTAATTTTTAATATAATTTGATCCTCTATCATTAATTAGTTTAAATAGTTAAATATTAATA
AATATTTCAATAAAATACTTACATTATTTTTTTCTCGAAAACATTATTCTAATAATAAAATAAAA
TTTAAGATTAAATCTAA
Found at i:93932190 original size:9 final size:9
Alignment explanation
Indices: 93932178--93932211 Score: 50
Period size: 9 Copynumber: 3.8 Consensus size: 9
93932168 GTTAATCAAA
93932178 TCGAGTTAT
1 TCGAGTTAT
93932187 TCGAGTTAT
1 TCGAGTTAT
*
93932196 TCGAATTAT
1 TCGAGTTAT
*
93932205 TCAAGTT
1 TCGAGTT
93932212 CTGAGTTCAA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
9 22 1.00
ACGTcount: A:0.26, C:0.12, G:0.18, T:0.44
Consensus pattern (9 bp):
TCGAGTTAT
Found at i:93932361 original size:19 final size:19
Alignment explanation
Indices: 93932339--93932377 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
93932329 ATTACGAAAT
93932339 AATTCAAAATAATTT-TAAA
1 AATTCAAAAT-ATTTATAAA
*
93932358 AATTCAGAATATTTATAAA
1 AATTCAAAATATTTATAAA
93932377 A
1 A
93932378 TTTTAAAAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 4 0.22
19 14 0.78
ACGTcount: A:0.56, C:0.05, G:0.03, T:0.36
Consensus pattern (19 bp):
AATTCAAAATATTTATAAA
Found at i:93932580 original size:15 final size:15
Alignment explanation
Indices: 93932560--93932593 Score: 59
Period size: 15 Copynumber: 2.3 Consensus size: 15
93932550 CTCAATTAAC
93932560 TTAAAAAATTTTCAA
1 TTAAAAAATTTTCAA
*
93932575 TTAAAAAATTTTCAC
1 TTAAAAAATTTTCAA
93932590 TTAA
1 TTAA
93932594 TTCAACTTAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.50, C:0.09, G:0.00, T:0.41
Consensus pattern (15 bp):
TTAAAAAATTTTCAA
Found at i:93932892 original size:14 final size:14
Alignment explanation
Indices: 93932873--93932912 Score: 55
Period size: 14 Copynumber: 2.9 Consensus size: 14
93932863 TACCTTTCTT
93932873 TTCTTTCTCCTCTC
1 TTCTTTCTCCTCTC
93932887 TTCTTT-TCCCTCTC
1 TTCTTTCT-CCTCTC
*
93932901 TTTTTTCTCCTC
1 TTCTTTCTCCTC
93932913 ACTGCCAGCT
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
13 1 0.04
14 21 0.91
15 1 0.04
ACGTcount: A:0.00, C:0.40, G:0.00, T:0.60
Consensus pattern (14 bp):
TTCTTTCTCCTCTC
Found at i:93941142 original size:16 final size:16
Alignment explanation
Indices: 93941111--93941145 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
93941101 GATTAGGGTG
**
93941111 AATAGAATAAGGTTGT
1 AATAGAATAAAATTGT
93941127 AATAGAATAAAATTGT
1 AATAGAATAAAATTGT
93941143 AAT
1 AAT
93941146 CAATAATTCA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.51, C:0.00, G:0.17, T:0.31
Consensus pattern (16 bp):
AATAGAATAAAATTGT
Found at i:93941563 original size:117 final size:120
Alignment explanation
Indices: 93941320--93941571 Score: 376
Period size: 117 Copynumber: 2.1 Consensus size: 120
93941310 TGTTATTGTT
* *
93941320 ATTAAATT-TTAATA-AGATTATTATTAAATATAATTTAATAAAAATATAAATTAAATAATTTAA
1 ATTACATTCTTAATATAGATTATTATTAAATATAATTTAACAAAAATATAAATTAAATAATTTAA
93941383 TCATATTTTAACATAATTATTATTAAATACAATTTAATAAAATAATATATAATTTA
66 TCATATTTTAACATAA-TATTATTAAATACAATTTAATAAAATAATATATAATTTA
*
93941439 ATAACATTCTTAATATA-ATTATTATTAAAATATGAA-TTAACAAAAATCAT-AA-TAAATAATT
1 ATTACATTCTTAATATAGATTATTATT-AAATAT-AATTTAACAAAAAT-ATAAATTAAATAATT
*
93941500 TAATCATATTTTAACAT-A-ATTATTAAATACAATTTAATAGAATAATATATAATTTA
63 TAATCATATTTTAACATAATATTATTAAATACAATTTAATAAAATAATATATAATTTA
93941556 ATTACATTCTTAATAT
1 ATTACATTCTTAATAT
93941572 TTTAGACAAA
Statistics
Matches: 123, Mismatches: 5, Indels: 12
0.88 0.04 0.09
Matches are distributed among these distances:
117 52 0.42
119 7 0.06
120 41 0.33
121 19 0.15
122 4 0.03
ACGTcount: A:0.52, C:0.05, G:0.01, T:0.42
Consensus pattern (120 bp):
ATTACATTCTTAATATAGATTATTATTAAATATAATTTAACAAAAATATAAATTAAATAATTTAA
TCATATTTTAACATAATATTATTAAATACAATTTAATAAAATAATATATAATTTA
Found at i:93944951 original size:43 final size:42
Alignment explanation
Indices: 93944856--93944973 Score: 148
Period size: 43 Copynumber: 2.8 Consensus size: 42
93944846 GGTTACTGAG
* *
93944856 ATTACGTGTAAGACCATATCTGGGATATGGCATCGATATGAC
1 ATTACGTGTAAGACCATATCTGGGATATAGCATCGATACGAC
* * * *
93944898 ACTT-TGTGTAAGACCATAGCTGGGCTATTAGCATCGATACGAT
1 A-TTACGTGTAAGACCATATCTGGGATA-TAGCATCGATACGAC
*
93944941 ATTACATGTAAGACCATATCTGGGATATAGCAT
1 ATTACGTGTAAGACCATATCTGGGATATAGCAT
93944974 TGGTACGGTA
Statistics
Matches: 63, Mismatches: 10, Indels: 6
0.80 0.13 0.08
Matches are distributed among these distances:
42 29 0.46
43 34 0.54
ACGTcount: A:0.31, C:0.17, G:0.22, T:0.30
Consensus pattern (42 bp):
ATTACGTGTAAGACCATATCTGGGATATAGCATCGATACGAC
Found at i:93944993 original size:42 final size:41
Alignment explanation
Indices: 93944861--93944995 Score: 144
Period size: 42 Copynumber: 3.2 Consensus size: 41
93944851 CTGAGATTAC
* * *
93944861 GTGTAAGACCATATCTGGGATATGGCATCGATATGACACTTT
1 GTGTAAGACCATATCTGGGATATAGCATCGATACGATA-TTT
* * *
93944903 GTGTAAGACCATAGCTGGGCTATTAGCATCGATACGATATTAC
1 GTGTAAGACCATATCTGGGATA-TAGCATCGATACGATATT-T
* * * *
93944946 ATGTAAGACCATATCTGGGATATAGCATTGGTACGGTATTGT
1 GTGTAAGACCATATCTGGGATATAGCATCGATACGATATT-T
93944988 GTGTAAGA
1 GTGTAAGA
93944996 GATTCTCGAG
Statistics
Matches: 76, Mismatches: 15, Indels: 4
0.80 0.16 0.04
Matches are distributed among these distances:
42 44 0.58
43 32 0.42
ACGTcount: A:0.30, C:0.15, G:0.25, T:0.30
Consensus pattern (41 bp):
GTGTAAGACCATATCTGGGATATAGCATCGATACGATATTT
Found at i:93949655 original size:43 final size:43
Alignment explanation
Indices: 93949494--93949664 Score: 157
Period size: 43 Copynumber: 4.0 Consensus size: 43
93949484 TAGGTTACCT
* * * *
93949494 ATATGTGATTACATGTAAGACCATGTTTGGGACATTGGAATTG
1 ATATGTGATTACATGTAAGACCATATCTGGGACAATGGCATTG
* * *
93949537 -TATTGTGATTACATGTAAGACCATGTCTGGGACATTGACATTG
1 ATA-TGTGATTACATGTAAGACCATATCTGGGACAATGGCATTG
* * *** * * *
93949580 TTATTTGATTTTGTGTAAGACCCTATCTGGGATAATGGCATCG
1 ATATGTGATTACATGTAAGACCATATCTGGGACAATGGCATTG
* * *
93949623 ATATGTGATAACATGTAAGACCATATTTGGGA-TATGGCATTG
1 ATATGTGATTACATGTAAGACCATATCTGGGACAATGGCATTG
93949665 TACGAGCTTT
Statistics
Matches: 103, Mismatches: 23, Indels: 5
0.79 0.18 0.04
Matches are distributed among these distances:
42 10 0.10
43 91 0.88
44 2 0.02
ACGTcount: A:0.29, C:0.12, G:0.24, T:0.36
Consensus pattern (43 bp):
ATATGTGATTACATGTAAGACCATATCTGGGACAATGGCATTG
Found at i:93953911 original size:20 final size:20
Alignment explanation
Indices: 93953886--93953926 Score: 82
Period size: 20 Copynumber: 2.0 Consensus size: 20
93953876 GGGGCCGCAA
93953886 AATAGTAATGGAAGATTTCT
1 AATAGTAATGGAAGATTTCT
93953906 AATAGTAATGGAAGATTTCT
1 AATAGTAATGGAAGATTTCT
93953926 A
1 A
93953927 TGTGAAATCA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.41, C:0.05, G:0.20, T:0.34
Consensus pattern (20 bp):
AATAGTAATGGAAGATTTCT
Found at i:93954138 original size:30 final size:30
Alignment explanation
Indices: 93954102--93954162 Score: 104
Period size: 30 Copynumber: 2.0 Consensus size: 30
93954092 CAAAGTTGAA
* *
93954102 GTTCAAAAGAGGATTAGATCCAATCATCAT
1 GTTCAAAAGAGGATTAGATCAAATCACCAT
93954132 GTTCAAAAGAGGATTAGATCAAATCACCAT
1 GTTCAAAAGAGGATTAGATCAAATCACCAT
93954162 G
1 G
93954163 CGAATGTTTA
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.41, C:0.16, G:0.18, T:0.25
Consensus pattern (30 bp):
GTTCAAAAGAGGATTAGATCAAATCACCAT
Found at i:93959710 original size:27 final size:27
Alignment explanation
Indices: 93959680--93959733 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
93959670 TCATACAACC
* * *
93959680 CATGTAATAGTAATTTAACATTGAATT
1 CATGTAACAATAATTTAACATTCAATT
*
93959707 CATGTAACAATAATTTACCATTCAATT
1 CATGTAACAATAATTTAACATTCAATT
93959734 ACACATGACA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.41, C:0.13, G:0.07, T:0.39
Consensus pattern (27 bp):
CATGTAACAATAATTTAACATTCAATT
Found at i:93962037 original size:46 final size:48
Alignment explanation
Indices: 93961868--93962167 Score: 218
Period size: 46 Copynumber: 6.4 Consensus size: 48
93961858 CATGTTCTAA
* * * *
93961868 ACATGGTCTTACACTAGCTCTCACATATC-CATGCCGATGCCATGTCCCAG
1 ACATGGTCTTACACTGGCT-T-ACATCTCGTAGGCCGATG-CATGTCCCAG
* * * * *
93961918 ACATGGTCTTATATTGGC--ACCTCT-ATACGTGCTGATGCCATGTCCCAG
1 ACATGGTCTTACACTGGCTTACATCTCGTA-G-GCCGATG-CATGTCCCAG
* * *
93961966 ACATGGTCTTACACTGAC--ATATCTCGTA-GCCGATGCAAGTCCCAG
1 ACATGGTCTTACACTGGCTTACATCTCGTAGGCCGATGCATGTCCCAG
*
93962011 ACA-CGTCTTACACTGGCTTACATCTCG-AGGCCGATGCATGTCCCAG
1 ACATGGTCTTACACTGGCTTACATCTCGTAGGCCGATGCATGTCCCAG
* * *
93962057 ACAT-GTCTTACACTAGCTTTCATCT--TAATGCCGATGCCATGTCCCAG
1 ACATGGTCTTACACTGGCTTACATCTCGT-AGGCCGATG-CATGTCCCAG
* * *
93962104 ACATGGTCTTACACTGGCTCT-CATAAT-GT-GGCCAATGCATGTCCCAA
1 ACATGGTCTTACACTGGCT-TACAT-CTCGTAGGCCGATGCATGTCCCAG
*
93962151 ACAT-GTCTTACATTGGC
1 ACATGGTCTTACACTGGC
93962168 ACACAAATAA
Statistics
Matches: 206, Mismatches: 29, Indels: 34
0.77 0.11 0.13
Matches are distributed among these distances:
44 12 0.06
45 13 0.06
46 76 0.37
47 27 0.13
48 58 0.28
49 4 0.02
50 16 0.08
ACGTcount: A:0.24, C:0.30, G:0.19, T:0.28
Consensus pattern (48 bp):
ACATGGTCTTACACTGGCTTACATCTCGTAGGCCGATGCATGTCCCAG
Found at i:93962142 original size:94 final size:95
Alignment explanation
Indices: 93961763--93962162 Score: 278
Period size: 94 Copynumber: 4.2 Consensus size: 95
93961753 ATGCCGATGC
* * * ** *
93961763 CATGTCCTAGACATGGTCTTACACTAGCTCATCCATC--AAG-TAATGCCATGTCCCAAACATGG
1 CATGTCCCAAACATGGTCTTACACTAGCT-AT-CATCTTATGCCGATGCCATGTCCCAGACATGG
* * * **
93961825 TCTTACACTGACTATCGA-AATCGAGGCTAACAA
64 TCTTACACTGGCTCTC-ATAATCGAGGCCAA-TG
* * *
93961858 CATGTTCTAAACATGGTCTTACACTAGCTCTCA-CATATCCATGCCGATGCCATGTCCCAGACAT
1 CATGTCCCAAACATGGTCTTACACTAGCTATCATC-T-T--ATGCCGATGCCATGTCCCAGACAT
* * * * **
93961922 GGTCTTATATTGGCACCTC-T-ATACG-TGCTGATG
62 GGTCTTACACTGGC-TCTCATAAT-CGAGGCCAATG
* * * *
93961955 CCATGTCCCAGACATGGTCTTACACT-GACATATC-TCGTA-GCCGATG-CAAGTCCCAGACA-C
1 -CATGTCCCAAACATGGTCTTACACTAG-C-TATCATCTTATGCCGATGCCATGTCCCAGACATG
* *
93962015 GTCTTACACTGGCT-TACAT-CTCGAGGCCGATG
63 GTCTTACACTGGCTCT-CATAATCGAGGCCAATG
* *
93962047 CATGTCCCAGACAT-GTCTTACACTAGCTTTCATCTTAATGCCGATGCCATGTCCCAGACATGGT
1 CATGTCCCAAACATGGTCTTACACTAGCTATCATCTT-ATGCCGATGCCATGTCCCAGACATGGT
*
93962111 CTTACACTGGCTCTCATAAT-GTGGCCAATG
65 CTTACACTGGCTCTCATAATCGAGGCCAATG
93962141 CATGTCCCAAACAT-GTCTTACA
1 CATGTCCCAAACATGGTCTTACA
93962163 TTGGCACACA
Statistics
Matches: 243, Mismatches: 37, Indels: 51
0.73 0.11 0.15
Matches are distributed among these distances:
89 3 0.01
90 15 0.06
91 19 0.08
92 27 0.11
93 26 0.11
94 54 0.22
95 30 0.12
97 2 0.01
98 31 0.13
99 34 0.14
100 2 0.01
ACGTcount: A:0.26, C:0.29, G:0.17, T:0.28
Consensus pattern (95 bp):
CATGTCCCAAACATGGTCTTACACTAGCTATCATCTTATGCCGATGCCATGTCCCAGACATGGTC
TTACACTGGCTCTCATAATCGAGGCCAATG
Found at i:93966411 original size:61 final size:61
Alignment explanation
Indices: 93966316--93966443 Score: 247
Period size: 61 Copynumber: 2.1 Consensus size: 61
93966306 ACAGTCCACT
93966316 ACAACACTATGAAAAGTTAACCAATCCATTCCAAGGATTACATCAAATTCATCAAACGACA
1 ACAACACTATGAAAAGTTAACCAATCCATTCCAAGGATTACATCAAATTCATCAAACGACA
*
93966377 ACAACACTATGAGAAGTTAACCAATCCATTCCAAGGATTACATCAAATTCATCAAACGACA
1 ACAACACTATGAAAAGTTAACCAATCCATTCCAAGGATTACATCAAATTCATCAAACGACA
93966438 ACAACA
1 ACAACA
93966444 TGAGGTTAGC
Statistics
Matches: 66, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
61 66 1.00
ACGTcount: A:0.46, C:0.25, G:0.09, T:0.20
Consensus pattern (61 bp):
ACAACACTATGAAAAGTTAACCAATCCATTCCAAGGATTACATCAAATTCATCAAACGACA
Found at i:93970487 original size:43 final size:42
Alignment explanation
Indices: 93970422--93970586 Score: 201
Period size: 43 Copynumber: 3.9 Consensus size: 42
93970412 AACTCGTACA
* * *
93970422 ATGCCA-TATCCCAGATATGGTCTTACATGTTATCACATATCG
1 ATGCCATTGTCCCAGACATGGTCTTACATGTAATCACATA-CG
* * *
93970464 ATGCCATTGTCCCAGACAGGGTCTTACACG-AGATCATATAACG
1 ATGCCATTGTCCCAGACATGGTCTTACATGTA-ATCACAT-ACG
* *
93970507 ATGCCAATGTCCCAGACATGGTCTTACATGTAATCA-ATACA
1 ATGCCATTGTCCCAGACATGGTCTTACATGTAATCACATACG
*
93970548 ATGCCATTGTCCCAGACATGGTCTTACATGTCATCACAT
1 ATGCCATTGTCCCAGACATGGTCTTACATGTAATCACAT
93970587 CTCTATAATC
Statistics
Matches: 106, Mismatches: 12, Indels: 10
0.83 0.09 0.08
Matches are distributed among these distances:
41 36 0.34
42 10 0.09
43 58 0.55
44 2 0.02
ACGTcount: A:0.30, C:0.25, G:0.16, T:0.28
Consensus pattern (42 bp):
ATGCCATTGTCCCAGACATGGTCTTACATGTAATCACATACG
Found at i:93975051 original size:43 final size:43
Alignment explanation
Indices: 93974986--93975077 Score: 121
Period size: 43 Copynumber: 2.1 Consensus size: 43
93974976 AAGGACATAC
* * *
93974986 GCCCGTGTAGCACGGCCATGTGTCTCACATAGCCACCAGACAA
1 GCCCGTATAGCACAGCCATGTGTCTCACACAGCCACCAGACAA
* * * *
93975029 GCCCGTATAGCCCAGCCGTGTGTCTCACACGGCCACCAGACAT
1 GCCCGTATAGCACAGCCATGTGTCTCACACAGCCACCAGACAA
93975072 GCCCGT
1 GCCCGT
93975078 GTCACAAGCC
Statistics
Matches: 42, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
43 42 1.00
ACGTcount: A:0.22, C:0.38, G:0.24, T:0.16
Consensus pattern (43 bp):
GCCCGTATAGCACAGCCATGTGTCTCACACAGCCACCAGACAA
Found at i:93978110 original size:26 final size:26
Alignment explanation
Indices: 93978074--93978125 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
93978064 TACGTGAAAA
93978074 ACTTGACATACATCTAATGGATGTTG
1 ACTTGACATACATCTAATGGATGTTG
*
93978100 ACTTGACATACATCTAATGTATGTTG
1 ACTTGACATACATCTAATGGATGTTG
93978126 TTACATCCTA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.31, C:0.15, G:0.17, T:0.37
Consensus pattern (26 bp):
ACTTGACATACATCTAATGGATGTTG
Found at i:93978597 original size:29 final size:29
Alignment explanation
Indices: 93978564--93978621 Score: 116
Period size: 29 Copynumber: 2.0 Consensus size: 29
93978554 GGAAAAGATG
93978564 TTAAAGAAATTTTACATGGATAAAGCACA
1 TTAAAGAAATTTTACATGGATAAAGCACA
93978593 TTAAAGAAATTTTACATGGATAAAGCACA
1 TTAAAGAAATTTTACATGGATAAAGCACA
93978622 CCCATTAAGT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.48, C:0.10, G:0.14, T:0.28
Consensus pattern (29 bp):
TTAAAGAAATTTTACATGGATAAAGCACA
Found at i:93987543 original size:15 final size:15
Alignment explanation
Indices: 93987523--93987552 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
93987513 AATATGAAAG
93987523 ATATGTTTTGGATTA
1 ATATGTTTTGGATTA
*
93987538 ATATGTTTTGTATTA
1 ATATGTTTTGGATTA
93987553 GAATTTTTGA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.27, C:0.00, G:0.17, T:0.57
Consensus pattern (15 bp):
ATATGTTTTGGATTA
Found at i:93988177 original size:45 final size:45
Alignment explanation
Indices: 93988101--93988222 Score: 118
Period size: 45 Copynumber: 2.7 Consensus size: 45
93988091 TAGGATATCG
* * * *
93988101 ATATGTGTTTTCATGTAAGACCACATTTGGGAAGTCAGCATCCAT
1 ATATGTGGTTACATGTAAGACCACGTCTGGGAAGTCAGCATCCAT
* * *** * ** *
93988146 ATATTTGTTTTTGTGTAAGACCACGTCTGGGACGTTGGCATCGAT
1 ATATGTGGTTACATGTAAGACCACGTCTGGGAAGTCAGCATCCAT
*
93988191 ATATGTGGTTACATGTAAGACCATGTCTGGGA
1 ATATGTGGTTACATGTAAGACCACGTCTGGGA
93988223 CATCGGCATC
Statistics
Matches: 62, Mismatches: 15, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
45 62 1.00
ACGTcount: A:0.25, C:0.16, G:0.25, T:0.34
Consensus pattern (45 bp):
ATATGTGGTTACATGTAAGACCACGTCTGGGAAGTCAGCATCCAT
Found at i:93988223 original size:45 final size:42
Alignment explanation
Indices: 93988159--93988314 Score: 129
Period size: 45 Copynumber: 3.7 Consensus size: 42
93988149 TTTGTTTTTG
* * *
93988159 TGTAAGACCACGTCTGGGACGTTGGCATCGATATATGTGGTTACA
1 TGTAAGACCATGTCTGGGACGTTGGCATCGATAT-T-CGATT-CA
* * *
93988204 TGTAAGACCATGTCTGGGACATCGGCATCG-TATTCGATTCG
1 TGTAAGACCATGTCTGGGACGTTGGCATCGATATTCGATTCA
* * ** *
93988245 TGTAAGACCCTGTCTGGGACAG-TGCCATCGATATGAGATAGCA
1 TGTAAGACCATGTCTGGGAC-GTTGGCATCGATATTCGAT-TCA
* *
93988288 TGTAAGACCACGTCTGGGA-TTTGGCAT
1 TGTAAGACCATGTCTGGGACGTTGGCAT
93988315 TGTTTGATAT
Statistics
Matches: 89, Mismatches: 18, Indels: 11
0.75 0.15 0.09
Matches are distributed among these distances:
41 26 0.29
42 14 0.16
43 19 0.21
44 3 0.03
45 27 0.30
ACGTcount: A:0.24, C:0.20, G:0.28, T:0.28
Consensus pattern (42 bp):
TGTAAGACCATGTCTGGGACGTTGGCATCGATATTCGATTCA
Found at i:93989123 original size:21 final size:20
Alignment explanation
Indices: 93989070--93989131 Score: 63
Period size: 22 Copynumber: 3.0 Consensus size: 20
93989060 AATTTCGATC
*
93989070 TTGATATATATATGTGAGGTGT
1 TTGATATATATATGT-A-ATGT
93989092 TTGATATATATATGTTAATGT
1 TTGATATATATATG-TAATGT
*
93989113 TTGAGTA-ATATGTGTAATG
1 TTGA-TATATATATGTAATG
93989132 AATGGTTTTA
Statistics
Matches: 36, Mismatches: 2, Indels: 6
0.82 0.05 0.14
Matches are distributed among these distances:
20 5 0.14
21 13 0.36
22 17 0.47
23 1 0.03
ACGTcount: A:0.31, C:0.00, G:0.23, T:0.47
Consensus pattern (20 bp):
TTGATATATATATGTAATGT
Found at i:93990650 original size:30 final size:30
Alignment explanation
Indices: 93990616--93990675 Score: 102
Period size: 30 Copynumber: 2.0 Consensus size: 30
93990606 TATTTTATTA
93990616 TTAATTTTGTTATTATTTTAAAGGCATTTG
1 TTAATTTTGTTATTATTTTAAAGGCATTTG
* *
93990646 TTAATTTTTTTATTATTTTAGAGGCATTTG
1 TTAATTTTGTTATTATTTTAAAGGCATTTG
93990676 CTTGTTAAGT
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.25, C:0.03, G:0.13, T:0.58
Consensus pattern (30 bp):
TTAATTTTGTTATTATTTTAAAGGCATTTG
Done.