Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A06
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 115140250
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2234201 characters in sequence are not A, C, G, or T
File 276 of 345
Found at i:93992983 original size:21 final size:22
Alignment explanation
Indices: 93992938--93992986 Score: 64
Period size: 22 Copynumber: 2.3 Consensus size: 22
93992928 TGCAGGGCTT
* *
93992938 ACACGCCCGTGTGGTCCAAGGG
1 ACACGCCCATGTGATCCAAGGG
*
93992960 ACACGCCCATGTGATCC-TGGG
1 ACACGCCCATGTGATCCAAGGG
93992981 ACACGC
1 ACACGC
93992987 TCGTGCTACA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
21 9 0.38
22 15 0.62
ACGTcount: A:0.20, C:0.35, G:0.31, T:0.14
Consensus pattern (22 bp):
ACACGCCCATGTGATCCAAGGG
Found at i:93995684 original size:19 final size:20
Alignment explanation
Indices: 93995662--93995701 Score: 55
Period size: 19 Copynumber: 2.0 Consensus size: 20
93995652 CAAGTCATTA
*
93995662 TTATTCCATCTCAAGA-TTC
1 TTATGCCATCTCAAGAGTTC
*
93995681 TTATGCCATGTCAAGAGTTC
1 TTATGCCATCTCAAGAGTTC
93995701 T
1 T
93995702 ATGTTAGTTG
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
19 14 0.78
20 4 0.22
ACGTcount: A:0.25, C:0.23, G:0.12, T:0.40
Consensus pattern (20 bp):
TTATGCCATCTCAAGAGTTC
Found at i:94009070 original size:24 final size:25
Alignment explanation
Indices: 94009042--94009105 Score: 87
Period size: 24 Copynumber: 2.6 Consensus size: 25
94009032 TCAACCAAAT
* * *
94009042 TCGCACACATAGTGCTA-ATTAAGC
1 TCGCACACATAGTGCCATACTAAAC
94009066 TCGCACACATAGTGCCATACTAAAC
1 TCGCACACATAGTGCCATACTAAAC
94009091 -CGCACACATAGTGCC
1 TCGCACACATAGTGCC
94009106 TGAAATTTTC
Statistics
Matches: 36, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
24 31 0.86
25 5 0.14
ACGTcount: A:0.33, C:0.31, G:0.16, T:0.20
Consensus pattern (25 bp):
TCGCACACATAGTGCCATACTAAAC
Found at i:94009156 original size:24 final size:24
Alignment explanation
Indices: 94009129--94009178 Score: 73
Period size: 24 Copynumber: 2.1 Consensus size: 24
94009119 CATGCATCAA
*
94009129 CATTCAAATCTGCACACATAGTGC
1 CATTCAAATCCGCACACATAGTGC
* *
94009153 CATTTAATTCCGCACACATAGTGC
1 CATTCAAATCCGCACACATAGTGC
94009177 CA
1 CA
94009179 ATGTTAACTC
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.32, C:0.30, G:0.12, T:0.26
Consensus pattern (24 bp):
CATTCAAATCCGCACACATAGTGC
Found at i:94009367 original size:189 final size:188
Alignment explanation
Indices: 94009134--94009510 Score: 682
Period size: 189 Copynumber: 2.0 Consensus size: 188
94009124 ATCAACATTC
* *
94009134 AAATCTGCACACATAGTGCCATTTAATTCCGCACACATAGTGCCAATGTTAACTCATTATAATAA
1 AAATCTGCACACAAAGTGACATTTAATTCCGCACACATAGTGCCAATGTTAACTCATTATAATAA
94009199 GGCAATTTACTTAATTCAAATAGCATATAAAATCTGCACACAAAGTGACATTTAATTCCGCACAC
66 GGCAATTTACTTAATTCAAATAGCATATAAAATCTGCACACAAAGTGACATTTAATTCCGCACAC
* *
94009264 ATAGTGCCAATGTTAACTCATTATAATAAGGCAATTTACTTAATTCAAATAGCATATA
131 ATAGTGCCAAAGTTAACTCATTATAATAAGGCAACTTACTTAATTCAAATAGCATATA
*
94009322 AAATCTGCACACAAAGTGACATTTTAATTCTGCACACATAGTGCCAATGTTAACTCATTATAATA
1 AAATCTGCACACAAAGTGACA-TTTAATTCCGCACACATAGTGCCAATGTTAACTCATTATAATA
*
94009387 AGGCAATTTACTTAATTCAAATAGCATATAAAATCTGCACACAAAGTGACATTTAATTCTGCACA
65 AGGCAATTTACTTAATTCAAATAGCATATAAAATCTGCACACAAAGTGACATTTAATTCCGCACA
*
94009452 CATAGTGCCAAAGTTAACTCATTATAATATGGCAACTTACTTAATTCAAATAGCATATA
130 CATAGTGCCAAAGTTAACTCATTATAATAAGGCAACTTACTTAATTCAAATAGCATATA
94009511 CGGTCACATT
Statistics
Matches: 181, Mismatches: 7, Indels: 1
0.96 0.04 0.01
Matches are distributed among these distances:
188 19 0.10
189 162 0.90
ACGTcount: A:0.40, C:0.19, G:0.11, T:0.31
Consensus pattern (188 bp):
AAATCTGCACACAAAGTGACATTTAATTCCGCACACATAGTGCCAATGTTAACTCATTATAATAA
GGCAATTTACTTAATTCAAATAGCATATAAAATCTGCACACAAAGTGACATTTAATTCCGCACAC
ATAGTGCCAAAGTTAACTCATTATAATAAGGCAACTTACTTAATTCAAATAGCATATA
Found at i:94009412 original size:95 final size:94
Alignment explanation
Indices: 94009134--94009510 Score: 682
Period size: 94 Copynumber: 4.0 Consensus size: 94
94009124 ATCAACATTC
* *
94009134 AAATCTGCACACATAGTGCCATTTAATTCCGCACACATAGTGCCAATGTTAACTCATTATAATAA
1 AAATCTGCACACAAAGTGACATTTAATTCCGCACACATAGTGCCAATGTTAACTCATTATAATAA
94009199 GGCAATTTACTTAATTCAAATAGCATATA
66 GGCAATTTACTTAATTCAAATAGCATATA
94009228 AAATCTGCACACAAAGTGACATTTAATTCCGCACACATAGTGCCAATGTTAACTCATTATAATAA
1 AAATCTGCACACAAAGTGACATTTAATTCCGCACACATAGTGCCAATGTTAACTCATTATAATAA
94009293 GGCAATTTACTTAATTCAAATAGCATATA
66 GGCAATTTACTTAATTCAAATAGCATATA
*
94009322 AAATCTGCACACAAAGTGACATTTTAATTCTGCACACATAGTGCCAATGTTAACTCATTATAATA
1 AAATCTGCACACAAAGTGACA-TTTAATTCCGCACACATAGTGCCAATGTTAACTCATTATAATA
94009387 AGGCAATTTACTTAATTCAAATAGCATATA
65 AGGCAATTTACTTAATTCAAATAGCATATA
* * *
94009417 AAATCTGCACACAAAGTGACATTTAATTCTGCACACATAGTGCCAAAGTTAACTCATTATAATAT
1 AAATCTGCACACAAAGTGACATTTAATTCCGCACACATAGTGCCAATGTTAACTCATTATAATAA
*
94009482 GGCAACTTACTTAATTCAAATAGCATATA
66 GGCAATTTACTTAATTCAAATAGCATATA
94009511 CGGTCACATT
Statistics
Matches: 276, Mismatches: 6, Indels: 2
0.97 0.02 0.01
Matches are distributed among these distances:
94 183 0.66
95 93 0.34
ACGTcount: A:0.40, C:0.19, G:0.11, T:0.31
Consensus pattern (94 bp):
AAATCTGCACACAAAGTGACATTTAATTCCGCACACATAGTGCCAATGTTAACTCATTATAATAA
GGCAATTTACTTAATTCAAATAGCATATA
Found at i:94014775 original size:29 final size:30
Alignment explanation
Indices: 94014712--94014807 Score: 92
Period size: 29 Copynumber: 3.3 Consensus size: 30
94014702 ATACATGCAT
** **
94014712 ATGGCCCA-CTAGGCCCAA-TCTTATTCAA
1 ATGGCCCATCTAGGCCCAATTCACATTCTC
* * *
94014740 ACGGCCCATCT-GGCCCAGTTCATATTCTC
1 ATGGCCCATCTAGGCCCAATTCACATTCTC
*
94014769 ATGGCCCA-CTAGGCCCAATTCACATTCTT
1 ATGGCCCATCTAGGCCCAATTCACATTCTC
94014798 ATGGCCCATC
1 ATGGCCCATC
94014808 AAACGCAAAT
Statistics
Matches: 55, Mismatches: 9, Indels: 6
0.79 0.13 0.09
Matches are distributed among these distances:
28 15 0.27
29 39 0.71
30 1 0.02
ACGTcount: A:0.23, C:0.35, G:0.16, T:0.26
Consensus pattern (30 bp):
ATGGCCCATCTAGGCCCAATTCACATTCTC
Found at i:94019164 original size:40 final size:40
Alignment explanation
Indices: 94019094--94019308 Score: 294
Period size: 40 Copynumber: 5.4 Consensus size: 40
94019084 GAATCACATA
* * * *
94019094 CCTTCGGAATTTAA-CCGGATATAGCT-ACTCGCTCAAATG
1 CCTTCGGGACTTAACCCGGATTTAG-TAACTCGCACAAATG
* *
94019133 CCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAACCCGGATT-TAGTAACTCGCACAAATG
*
94019173 CCTTCGGGACTTAACCCGGATTTAGTAACTCGCACCAATG
1 CCTTCGGGACTTAACCCGGATTTAGTAACTCGCACAAATG
* *
94019213 CCTTCGGG-CTTAGCCCGGAATTAGTAACTCGCACAAATG
1 CCTTCGGGACTTAACCCGGATTTAGTAACTCGCACAAATG
94019252 CCTTCGGGACTTAACCCGGATTTAGTAACTCGCACAAATG
1 CCTTCGGGACTTAACCCGGATTTAGTAACTCGCACAAATG
*
94019292 CCTTCGGGACCTAACCC
1 CCTTCGGGACTTAACCC
94019309 AGATATCATT
Statistics
Matches: 156, Mismatches: 15, Indels: 9
0.87 0.08 0.05
Matches are distributed among these distances:
39 48 0.31
40 106 0.68
41 2 0.01
ACGTcount: A:0.26, C:0.29, G:0.20, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAACCCGGATTTAGTAACTCGCACAAATG
Found at i:94019238 original size:79 final size:80
Alignment explanation
Indices: 94019094--94019301 Score: 307
Period size: 79 Copynumber: 2.6 Consensus size: 80
94019084 GAATCACATA
* * * * *
94019094 CCTTCGGAATTTAA-CCGGATATAGCT-ACTCGCTCAAATGCCTTCGGGACATAGCCCGGTTATA
1 CCTTCGGGACTTAACCCGGATTTAG-TAACTCGCACAAATGCCTTCGGGACATAGCCCGGATATA
94019157 GTAACTCGCACAAATG
65 GTAACTCGCACAAATG
* *
94019173 CCTTCGGGACTTAACCCGGATTTAGTAACTCGCACCAATGCCTTCGGG-CTTAGCCCGGA-ATTA
1 CCTTCGGGACTTAACCCGGATTTAGTAACTCGCACAAATGCCTTCGGGACATAGCCCGGATA-TA
94019236 GTAACTCGCACAAATG
65 GTAACTCGCACAAATG
94019252 CCTTCGGGACTTAACCCGGATTTAGTAACTCGCACAAATGCCTTCGGGAC
1 CCTTCGGGACTTAACCCGGATTTAGTAACTCGCACAAATGCCTTCGGGAC
94019302 CTAACCCAGA
Statistics
Matches: 117, Mismatches: 8, Indels: 7
0.89 0.06 0.05
Matches are distributed among these distances:
78 1 0.01
79 87 0.74
80 29 0.25
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (80 bp):
CCTTCGGGACTTAACCCGGATTTAGTAACTCGCACAAATGCCTTCGGGACATAGCCCGGATATAG
TAACTCGCACAAATG
Found at i:94021324 original size:18 final size:19
Alignment explanation
Indices: 94021301--94021338 Score: 60
Period size: 18 Copynumber: 2.1 Consensus size: 19
94021291 ATGGGCTCAA
94021301 TAGCCCATT-AGGCCCATT
1 TAGCCCATTCAGGCCCATT
*
94021319 TAGCCCATTCCGGCCCATT
1 TAGCCCATTCAGGCCCATT
94021338 T
1 T
94021339 GGCCAATCCT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 9 0.50
19 9 0.50
ACGTcount: A:0.18, C:0.37, G:0.16, T:0.29
Consensus pattern (19 bp):
TAGCCCATTCAGGCCCATT
Found at i:94021472 original size:8 final size:8
Alignment explanation
Indices: 94021451--94021495 Score: 54
Period size: 8 Copynumber: 5.6 Consensus size: 8
94021441 CAACTTTTGA
94021451 CTTTTCGG
1 CTTTTCGG
* *
94021459 CATTTCAG
1 CTTTTCGG
*
94021467 CTTTTCCG
1 CTTTTCGG
94021475 CTTTTCGG
1 CTTTTCGG
*
94021483 CATTTCGG
1 CTTTTCGG
94021491 CTTTT
1 CTTTT
94021496 GCCGATTCAT
Statistics
Matches: 30, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
8 30 1.00
ACGTcount: A:0.07, C:0.27, G:0.18, T:0.49
Consensus pattern (8 bp):
CTTTTCGG
Found at i:94031718 original size:29 final size:29
Alignment explanation
Indices: 94031682--94031762 Score: 119
Period size: 29 Copynumber: 2.8 Consensus size: 29
94031672 GCCCAATCAT
*
94031682 ATTTATATGGCCCATTAGGCCCAAATCAC
1 ATTTATATGGCCCATTAGGCCCAAATAAC
*
94031711 -TTGTATATGGCCCATTAGACCCAAATAAC
1 ATT-TATATGGCCCATTAGGCCCAAATAAC
*
94031740 ATTTATATGGCCCGTTAGGCCCA
1 ATTTATATGGCCCATTAGGCCCA
94031763 GTCACACATA
Statistics
Matches: 46, Mismatches: 4, Indels: 4
0.85 0.07 0.07
Matches are distributed among these distances:
28 2 0.04
29 42 0.91
30 2 0.04
ACGTcount: A:0.30, C:0.26, G:0.16, T:0.28
Consensus pattern (29 bp):
ATTTATATGGCCCATTAGGCCCAAATAAC
Found at i:94033809 original size:40 final size:40
Alignment explanation
Indices: 94033754--94034011 Score: 378
Period size: 40 Copynumber: 6.5 Consensus size: 40
94033744 TGGATGATAA
* * *
94033754 CCGGGCTAAGTCCCGAAGGCATTTGCGCTAGTGACTAGT-T
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-TAT
*
94033794 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGCTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
94033834 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
94033874 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
94033914 CCGGGCTAAGTCCCGAAGGCATTGGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* * * *
94033954 CCGGGCTATGTCCCGAAGGCATTCGAGCAAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
* *
94033994 CC-GGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
94034012 TACTTGGCTT
Statistics
Matches: 203, Mismatches: 13, Indels: 5
0.92 0.06 0.02
Matches are distributed among these distances:
39 16 0.08
40 187 0.92
ACGTcount: A:0.23, C:0.24, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:94040601 original size:11 final size:11
Alignment explanation
Indices: 94040571--94040604 Score: 52
Period size: 11 Copynumber: 3.2 Consensus size: 11
94040561 AATATTGTAT
94040571 TTATTAATTT-
1 TTATTAATTTA
94040581 TTATTAATTTA
1 TTATTAATTTA
*
94040592 TTATTTATTTA
1 TTATTAATTTA
94040603 TT
1 TT
94040605 TCAAATTTGG
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
10 10 0.45
11 12 0.55
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (11 bp):
TTATTAATTTA
Found at i:94041126 original size:18 final size:18
Alignment explanation
Indices: 94041105--94041142 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 18
94041095 ATTACAAAAT
*
94041105 AATT-AAAATAATTTTTAA
1 AATTCAAAAT-ATTTATAA
94041123 AATTCAAAATATTTATAA
1 AATTCAAAATATTTATAA
94041141 AA
1 AA
94041143 ATTTCAAATT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 13 0.72
19 5 0.28
ACGTcount: A:0.58, C:0.03, G:0.00, T:0.39
Consensus pattern (18 bp):
AATTCAAAATATTTATAA
Found at i:94041130 original size:28 final size:29
Alignment explanation
Indices: 94041092--94041146 Score: 78
Period size: 28 Copynumber: 1.9 Consensus size: 29
94041082 TTTATTAATA
94041092 AAAATTACAAAATAATTA-AAATAATTTTT
1 AAAATTACAAAATAATTATAAA-AATTTTT
*
94041121 AAAATT-CAAAATATTTATAAAAATTT
1 AAAATTACAAAATAATTATAAAAATTT
94041147 CAAATTTTAT
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
28 15 0.62
29 9 0.38
ACGTcount: A:0.58, C:0.04, G:0.00, T:0.38
Consensus pattern (29 bp):
AAAATTACAAAATAATTATAAAAATTTTT
Found at i:94041418 original size:24 final size:25
Alignment explanation
Indices: 94041391--94041442 Score: 61
Period size: 25 Copynumber: 2.1 Consensus size: 25
94041381 AAACTTTTTA
*
94041391 ATTTAACTCGAA-CAATTTCACTCG
1 ATTTAACTCAAATCAATTTCACTCG
* * *
94041415 ATTTGACTCAAATTAGTTTCACTCG
1 ATTTAACTCAAATCAATTTCACTCG
94041440 ATT
1 ATT
94041443 CGAAAAATTT
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
24 10 0.43
25 13 0.57
ACGTcount: A:0.31, C:0.21, G:0.10, T:0.38
Consensus pattern (25 bp):
ATTTAACTCAAATCAATTTCACTCG
Found at i:94049591 original size:22 final size:23
Alignment explanation
Indices: 94049549--94049600 Score: 56
Period size: 22 Copynumber: 2.3 Consensus size: 23
94049539 TGAAATATAG
*
94049549 ATAATATATTTAAATTAAATT-TT
1 ATAA-ATAATTAAATTAAATTATT
94049572 ATAAATAATTAATATT-AATTATT
1 ATAAATAATTAA-ATTAAATTATT
94049595 -TAAATA
1 ATAAATA
94049601 TATTTAAAAT
Statistics
Matches: 26, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
22 17 0.65
23 9 0.35
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (23 bp):
ATAAATAATTAAATTAAATTATT
Found at i:94049714 original size:16 final size:18
Alignment explanation
Indices: 94049693--94049725 Score: 52
Period size: 16 Copynumber: 1.9 Consensus size: 18
94049683 AATTAAACTT
94049693 TATTTTT-TTA-AATATA
1 TATTTTTATTACAATATA
94049709 TATTTTTATTACAATAT
1 TATTTTTATTACAATAT
94049726 CTTGTGTAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 7 0.47
17 3 0.20
18 5 0.33
ACGTcount: A:0.36, C:0.03, G:0.00, T:0.61
Consensus pattern (18 bp):
TATTTTTATTACAATATA
Found at i:94051093 original size:30 final size:30
Alignment explanation
Indices: 94051059--94051118 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
94051049 ACTTAACAAG
94051059 CAAAT-ACTTCTAAAATAATAACAAAATTAA
1 CAAATGACTT-TAAAATAATAACAAAATTAA
* * *
94051089 CAAATGTCTTTAAAATAATAATAAATTTAA
1 CAAATGACTTTAAAATAATAACAAAATTAA
94051119 TAATAAAATA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
30 23 0.88
31 3 0.12
ACGTcount: A:0.57, C:0.10, G:0.02, T:0.32
Consensus pattern (30 bp):
CAAATGACTTTAAAATAATAACAAAATTAA
Found at i:94051760 original size:13 final size:11
Alignment explanation
Indices: 94051724--94051754 Score: 53
Period size: 11 Copynumber: 2.8 Consensus size: 11
94051714 CTGCCCGTAT
94051724 TAATTTTTATA
1 TAATTTTTATA
*
94051735 TTATTTTTATA
1 TAATTTTTATA
94051746 TAATTTTTA
1 TAATTTTTA
94051755 AATATATATA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (11 bp):
TAATTTTTATA
Found at i:94051911 original size:30 final size:30
Alignment explanation
Indices: 94051877--94051938 Score: 99
Period size: 30 Copynumber: 2.1 Consensus size: 30
94051867 CTTAACAAGT
94051877 AAATG-CTTCTAAAATAATAAAAAAATTAAC
1 AAATGCCTT-TAAAATAATAAAAAAATTAAC
*
94051907 AAATGCCTTTAAAATAATAACAAAATTAAC
1 AAATGCCTTTAAAATAATAAAAAAATTAAC
94051937 AA
1 AA
94051939 TAAAATAAAC
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
30 27 0.90
31 3 0.10
ACGTcount: A:0.60, C:0.11, G:0.03, T:0.26
Consensus pattern (30 bp):
AAATGCCTTTAAAATAATAAAAAAATTAAC
Found at i:94058470 original size:40 final size:41
Alignment explanation
Indices: 94058274--94058456 Score: 213
Period size: 40 Copynumber: 4.6 Consensus size: 41
94058264 TTGAATGATG
* * *
94058274 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCAT-A
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA
* *
94058314 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATAC--TAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATAA
*
94058353 TTCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTA-AA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
94058392 TCC-GGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
94058432 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
94058457 AACGAGTAGC
Statistics
Matches: 123, Mismatches: 11, Indels: 18
0.81 0.07 0.12
Matches are distributed among these distances:
38 29 0.24
39 42 0.34
40 44 0.36
41 8 0.07
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (41 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:94058479 original size:79 final size:77
Alignment explanation
Indices: 94058327--94058489 Score: 202
Period size: 79 Copynumber: 2.1 Consensus size: 77
94058317 GGACTAAGAT
** **
94058327 CCGAAGGCATTTGTGCGAGATACTAATTCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAAA
1 CCGAAGGCATTTGTGCGAGATACTAAACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAAA
* *
94058392 TCCGGTTAAGTC
66 TCCAGTTAAATC
* *
94058404 CCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGCT
1 CCGAAGGCATTTGTGCGAGATACTA-AACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTTA-CT
* *
94058468 ATATCCAGTTAAATT
63 AAATCCAGTTAAATC
94058483 CCGAAGG
1 CCGAAGG
94058490 TACGTGATTT
Statistics
Matches: 73, Mismatches: 10, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
77 24 0.33
78 11 0.15
79 38 0.52
ACGTcount: A:0.27, C:0.21, G:0.26, T:0.26
Consensus pattern (77 bp):
CCGAAGGCATTTGTGCGAGATACTAAACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAAA
TCCAGTTAAATC
Found at i:94061900 original size:53 final size:48
Alignment explanation
Indices: 94061836--94061977 Score: 184
Period size: 52 Copynumber: 2.9 Consensus size: 48
94061826 AGGTGTCGCG
94061836 AGGGCCTAATGGCCGGATTGTGAATGAATGTGAAAGTGTATATATATGTGAT
1 AGGGCCTAATGGCC-GA-TGTGAATGAATGTGAAAGTGTATATATA--TGAT
94061888 AGGGGCCTAATGGCCCGATGTGAATGAATGTG-AAGTG--TATATATGAT
1 A-GGGCCTAATGG-CCGATGTGAATGAATGTGAAAGTGTATATATATGAT
*
94061935 AAGGCCTAATGGCCGATGTG-ATGAATGTGAAGAGTGTATATAT
1 AGGGCCTAATGGCCGATGTGAATGAATGTGAA-AGTGTATATAT
94061978 TGAAAATAAG
Statistics
Matches: 83, Mismatches: 1, Indels: 16
0.83 0.01 0.16
Matches are distributed among these distances:
44 9 0.11
45 9 0.11
46 14 0.17
47 5 0.06
48 5 0.06
49 6 0.07
51 5 0.06
52 15 0.18
53 13 0.16
54 2 0.02
ACGTcount: A:0.31, C:0.09, G:0.31, T:0.29
Consensus pattern (48 bp):
AGGGCCTAATGGCCGATGTGAATGAATGTGAAAGTGTATATATATGAT
Found at i:94061998 original size:48 final size:47
Alignment explanation
Indices: 94061838--94061980 Score: 184
Period size: 46 Copynumber: 2.9 Consensus size: 47
94061828 GTGTCGCGAG
*
94061838 GGCCTAATGGCCGGATTGTGAATGAATGTGAAAGTGTATATATATGTGATAGG
1 GGCCTAATGGCC-GA-TGTGAATGAATGTGAAAGTG--TATATAT-TGATA-A
94061891 GGCCTAATGGCCCGATGTGAATGAATGTG-AAGTGTATATA-TGATAA
1 GGCCTAATGG-CCGATGTGAATGAATGTGAAAGTGTATATATTGATAA
94061937 GGCCTAATGGCCGATGTG-ATGAATGTGAAGAGTGTATATATTGA
1 GGCCTAATGGCCGATGTGAATGAATGTGAA-AGTGTATATATTGA
94061981 AAATAAGGCT
Statistics
Matches: 85, Mismatches: 1, Indels: 14
0.85 0.01 0.14
Matches are distributed among these distances:
44 9 0.11
45 9 0.11
46 20 0.24
47 8 0.09
49 6 0.07
51 5 0.06
52 14 0.16
53 12 0.14
54 2 0.02
ACGTcount: A:0.31, C:0.09, G:0.31, T:0.29
Consensus pattern (47 bp):
GGCCTAATGGCCGATGTGAATGAATGTGAAAGTGTATATATTGATAA
Found at i:94063511 original size:79 final size:77
Alignment explanation
Indices: 94063415--94063624 Score: 313
Period size: 79 Copynumber: 2.8 Consensus size: 77
94063405 GAGAATCGAG
94063415 AGTGATATA-CCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATATCCGGCTAAGTCCCGA
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATATCCGGCTAAGT-CC-A
*
94063479 GGAGAATTCGTGCT
64 GGAGAATTCGTACT
* *
94063493 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCTAGTGATATATCCGGCAAAGTCCAGG
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATATCCGGCTAAGTCCAGG
*
94063558 AGCATTCGTACT
66 AGAATTCGTACT
*
94063570 AGTGATATATCCGGGCTAAGTTCCGAAGAGCA-TCGT-CTAGT-A-ATATCCGTGCTAA
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATATCCG-GCTAA
94063625 ACCTCGAAGC
Statistics
Matches: 123, Mismatches: 7, Indels: 8
0.89 0.05 0.06
Matches are distributed among these distances:
73 7 0.06
74 5 0.04
75 5 0.04
76 4 0.03
77 43 0.35
78 11 0.09
79 48 0.39
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.25
Consensus pattern (77 bp):
AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATATCCGGCTAAGTCCAGG
AGAATTCGTACT
Found at i:94063521 original size:40 final size:40
Alignment explanation
Indices: 94063415--94063624 Score: 294
Period size: 39 Copynumber: 5.5 Consensus size: 40
94063405 GAGAATCGAG
*
94063415 AGTGATATA-CCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
*
94063454 AGTGATATATCC-GGCTAAGTCCCGAGGAGAATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
94063493 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
* *
94063533 AGTGATATATCC-GGCAAAGT-CC-AGGAGCATTCGTACT
1 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
* *
94063570 AGTGATATATCCGGGCTAAGTTCCGAAGAGCA-TCGT-CT
1 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
*
94063608 AGT-A-ATATCCGTGCTAA
1 AGTGATATATCCGGGCTAA
94063625 ACCTCGAAGC
Statistics
Matches: 158, Mismatches: 8, Indels: 13
0.88 0.04 0.07
Matches are distributed among these distances:
36 12 0.08
37 27 0.17
38 14 0.09
39 59 0.37
40 46 0.29
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.25
Consensus pattern (40 bp):
AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
Found at i:94063666 original size:33 final size:32
Alignment explanation
Indices: 94063575--94063666 Score: 76
Period size: 33 Copynumber: 2.7 Consensus size: 32
94063565 GTACTAGTGA
* *
94063575 TATATCCGGGCTAAGTTCCGAAGAGCATCGTCTAG
1 TATATCCGGGCT-AGTCCCG-A-AGCATCGGCTAG
* ** *
94063610 TAATATCCGTGCTAAACCTCGAAGCATCGGCTGG
1 T-ATATCCGGGCTAGTCC-CGAAGCATCGGCTAG
94063644 TATATCCGGGCTAGGTCCCGAAG
1 TATATCCGGGCTA-GTCCCGAAG
94063667 AGTAATCATG
Statistics
Matches: 45, Mismatches: 9, Indels: 8
0.73 0.15 0.13
Matches are distributed among these distances:
33 16 0.36
34 13 0.29
35 4 0.09
36 12 0.27
ACGTcount: A:0.25, C:0.25, G:0.26, T:0.24
Consensus pattern (32 bp):
TATATCCGGGCTAGTCCCGAAGCATCGGCTAG
Found at i:94163358 original size:26 final size:28
Alignment explanation
Indices: 94163239--94163362 Score: 191
Period size: 28 Copynumber: 4.5 Consensus size: 28
94163229 TAAATTGTAC
*
94163239 AGCACTAAGTGTGCGAGCTTGATTATGT
1 AGCACTAAGTGTGCGAGCTTGATTATAT
*
94163267 AGCACTAAGTGTGCGAGCTTGATTATGT
1 AGCACTAAGTGTGCGAGCTTGATTATAT
*
94163295 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGAGCTTGATTATAT
94163323 AGCA-TAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGCTTGATTATAT
*
94163349 -GCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
94163363 GACTTAATAT
Statistics
Matches: 92, Mismatches: 3, Indels: 4
0.93 0.03 0.04
Matches are distributed among these distances:
25 3 0.03
26 19 0.21
27 12 0.13
28 58 0.63
ACGTcount: A:0.26, C:0.13, G:0.29, T:0.32
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGCTTGATTATAT
Found at i:94171431 original size:27 final size:28
Alignment explanation
Indices: 94171376--94171443 Score: 111
Period size: 27 Copynumber: 2.5 Consensus size: 28
94171366 AATTGTACAA
*
94171376 CACTAAGTGTGCGAGCTTGATTATGTAG
1 CACTAAGTGTGCGAGCTTGATTATATAG
94171404 CACTAAGTGTGCGAG-TTGATTATATAG
1 CACTAAGTGTGCGAGCTTGATTATATAG
*
94171431 CACTGAGTGTGCG
1 CACTAAGTGTGCG
94171444 GACTTAATAT
Statistics
Matches: 38, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
27 23 0.61
28 15 0.39
ACGTcount: A:0.25, C:0.15, G:0.29, T:0.31
Consensus pattern (28 bp):
CACTAAGTGTGCGAGCTTGATTATATAG
Found at i:94171454 original size:27 final size:27
Alignment explanation
Indices: 94171376--94171456 Score: 92
Period size: 27 Copynumber: 3.0 Consensus size: 27
94171366 AATTGTACAA
* *
94171376 CACTAAGTGTGCGAGCTTGATTATGTAG
1 CACTAAGTGTGCGA-CTTGAATATATAG
* *
94171404 CACTAAGTGTGCGAGTTGATTATATAG
1 CACTAAGTGTGCGACTTGAATATATAG
*
94171431 CACTGAGTGTGCGGACTT-AATATATA
1 CACTAAGTGTGC-GACTTGAATATATA
94171457 CTTTTTGAAT
Statistics
Matches: 47, Mismatches: 5, Indels: 3
0.85 0.09 0.05
Matches are distributed among these distances:
27 29 0.62
28 18 0.38
ACGTcount: A:0.28, C:0.14, G:0.26, T:0.32
Consensus pattern (27 bp):
CACTAAGTGTGCGACTTGAATATATAG
Found at i:94180402 original size:68 final size:67
Alignment explanation
Indices: 94180330--94180479 Score: 171
Period size: 67 Copynumber: 2.2 Consensus size: 67
94180320 CATCATGTGT
* * * *
94180330 ACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACC
1 ACAAGAGAGCTAC--GACA-TAT-ATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACC
94180392 ATGTAG
62 ATGTAG
** * *
94180398 ACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGT
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
94180463 AG
66 AG
94180465 ACAAGAGAGCTACGA
1 ACAAGAGAGCTACGA
94180480 GATAAACTGG
Statistics
Matches: 70, Mismatches: 9, Indels: 7
0.81 0.10 0.08
Matches are distributed among these distances:
64 20 0.29
65 7 0.10
66 4 0.06
67 26 0.37
68 13 0.19
ACGTcount: A:0.33, C:0.17, G:0.29, T:0.21
Consensus pattern (67 bp):
ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
AG
Found at i:94180435 original size:64 final size:64
Alignment explanation
Indices: 94180354--94180537 Score: 194
Period size: 67 Copynumber: 2.8 Consensus size: 64
94180344 AGACATTATG
* *
94180354 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * * *
94180418 ATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACCATGTAGACAAGAGAGCTACGAGAT
94180483 AA
63 AA
* * * *
94180485 ACTG--GCTAGGTCACATGGGTGGTACTAAGTGTTCACCATGT-GTACAAGAGAGC
1 A-TGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAG-ACAAGAGAGC
94180538 CGAACTATAT
Statistics
Matches: 98, Mismatches: 17, Indels: 11
0.78 0.13 0.09
Matches are distributed among these distances:
62 1 0.01
63 19 0.19
64 21 0.21
65 8 0.08
66 16 0.16
67 31 0.32
68 2 0.02
ACGTcount: A:0.30, C:0.17, G:0.30, T:0.23
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:94190830 original size:42 final size:42
Alignment explanation
Indices: 94190768--94190868 Score: 130
Period size: 42 Copynumber: 2.4 Consensus size: 42
94190758 GAGCATACTG
* * *
94190768 CACAGCTCGTGTGAGTAGCATTGTGTAGCTTACATTCAGACC
1 CACAGCTTGTGTGAGCAGCATCGTGTAGCTTACATTCAGACC
* *
94190810 CACAGCTTGTGTGAGCAGCATCGTGTAGCTTATATTCGGACC
1 CACAGCTTGTGTGAGCAGCATCGTGTAGCTTACATTCAGACC
** *
94190852 TGCAGGTTGTGTGAGCA
1 CACAGCTTGTGTGAGCA
94190869 AACCCATTTC
Statistics
Matches: 51, Mismatches: 8, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
42 51 1.00
ACGTcount: A:0.22, C:0.22, G:0.28, T:0.29
Consensus pattern (42 bp):
CACAGCTTGTGTGAGCAGCATCGTGTAGCTTACATTCAGACC
Found at i:94197562 original size:84 final size:84
Alignment explanation
Indices: 94197424--94197584 Score: 225
Period size: 84 Copynumber: 1.9 Consensus size: 84
94197414 ACTGTAACAA
* * * *
94197424 CCCATTTTTTAGTGGTGTTAGAAATAATGGTTTCGGTGTCACCAAATCCAACGAGTAAGTTCATA
1 CCCATTTTTTAGTAGTGTCAGAAACAATGGTTTCGGTGTCAACAAATCCAACGAGTAAGTTCATA
94197489 AATATTATATTTGTAACGG
66 AATATTATATTTGTAACGG
* ** **
94197508 CCCATTTTTTAGTAGTGTCAGAAACAGTGGTTTCGAG-GTCAACAAATCTGACGAGTAAGTTTGT
1 CCCATTTTTTAGTAGTGTCAGAAACAATGGTTTCG-GTGTCAACAAATCCAACGAGTAAGTTCAT
94197572 AAATATTATATTT
65 AAATATTATATTT
94197585 AATATTTACG
Statistics
Matches: 67, Mismatches: 9, Indels: 2
0.86 0.12 0.03
Matches are distributed among these distances:
84 66 0.99
85 1 0.01
ACGTcount: A:0.31, C:0.14, G:0.19, T:0.36
Consensus pattern (84 bp):
CCCATTTTTTAGTAGTGTCAGAAACAATGGTTTCGGTGTCAACAAATCCAACGAGTAAGTTCATA
AATATTATATTTGTAACGG
Found at i:94198991 original size:25 final size:25
Alignment explanation
Indices: 94198943--94199031 Score: 99
Period size: 25 Copynumber: 3.6 Consensus size: 25
94198933 AAACACACCA
* *
94198943 CAGCTCTTATGAGCTTACCGATTCT
1 CAGCTCGTATGAGCTTACCAATTCT
* *
94198968 CAGCTCGTATGAGCTTACTAATTCA
1 CAGCTCGTATGAGCTTACCAATTCT
* * *
94198993 CAACTCGTAAGAGCATACCAATTCAT
1 CAGCTCGTATGAGCTTACCAATTC-T
94199019 -AGCTCGTATGAGC
1 CAGCTCGTATGAGC
94199032 ATACATGTAC
Statistics
Matches: 52, Mismatches: 11, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
25 52 1.00
ACGTcount: A:0.28, C:0.26, G:0.17, T:0.29
Consensus pattern (25 bp):
CAGCTCGTATGAGCTTACCAATTCT
Found at i:94209533 original size:23 final size:22
Alignment explanation
Indices: 94209493--94209539 Score: 67
Period size: 23 Copynumber: 2.1 Consensus size: 22
94209483 TGCTTATATT
*
94209493 TAAACCAAAACATACCAAATCA
1 TAAACCAAAACATACCAAAACA
*
94209515 TAAACCAAAGTCATACCAAAACA
1 TAAACCAAA-ACATACCAAAACA
94209538 TA
1 TA
94209540 TAATTCATAA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
22 9 0.41
23 13 0.59
ACGTcount: A:0.57, C:0.26, G:0.02, T:0.15
Consensus pattern (22 bp):
TAAACCAAAACATACCAAAACA
Found at i:94217702 original size:48 final size:49
Alignment explanation
Indices: 94217637--94217760 Score: 153
Period size: 49 Copynumber: 2.6 Consensus size: 49
94217627 CCCTCTTTCT
**
94217637 CAATCGGTTTCCCTTTGA-TTATTGCTTATAGTTCTTTTTCCTCGTACC
1 CAATCGGTTTCCCTTTGACCGATTGCTTATAGTTCTTTTTCCTCGTACC
* * * * * *
94217685 CAATCGGTTTTCTTTTGACCGATTGCTTCTAGTTCTTTTTCCTCTTTCT
1 CAATCGGTTTCCCTTTGACCGATTGCTTATAGTTCTTTTTCCTCGTACC
*
94217734 CAATCGGTTTCCC-TTGACCGGTTGCTT
1 CAATCGGTTTCCCTTTGACCGATTGCTT
94217761 CTTGTTTTAT
Statistics
Matches: 64, Mismatches: 11, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
48 29 0.45
49 35 0.55
ACGTcount: A:0.12, C:0.26, G:0.15, T:0.48
Consensus pattern (49 bp):
CAATCGGTTTCCCTTTGACCGATTGCTTATAGTTCTTTTTCCTCGTACC
Found at i:94217778 original size:49 final size:48
Alignment explanation
Indices: 94217628--94217785 Score: 169
Period size: 48 Copynumber: 3.3 Consensus size: 48
94217618 TCTTTTCTTC
** *
94217628 CCTCTTTCTCAATCGGTTTCCCTTTGA-TTATTGCTTATAGTTCTTTTT
1 CCTCTTTCTCAATCGGTTTCCC-TTGACCGATTGCTTCTAGTTCTTTTT
* * * **
94217676 CCTCGTACCCAATCGGTTTTCTTTTGACCGATTGCTTCTAGTTCTTTTT
1 CCTCTTTCTCAATCGG-TTTCCCTTGACCGATTGCTTCTAGTTCTTTTT
* *
94217725 CCTCTTTCTCAATCGGTTTCCCTTGACCGGTTGCTTCTTGTT-TTATTT
1 CCTCTTTCTCAATCGGTTTCCCTTGACCGATTGCTTCTAGTTCTT-TTT
*
94217773 CC-CTCTCTCAATC
1 CCTCTTTCTCAATC
94217786 AGTTCATTGC
Statistics
Matches: 91, Mismatches: 16, Indels: 7
0.80 0.14 0.06
Matches are distributed among these distances:
47 12 0.13
48 44 0.48
49 35 0.38
ACGTcount: A:0.11, C:0.28, G:0.12, T:0.49
Consensus pattern (48 bp):
CCTCTTTCTCAATCGGTTTCCCTTGACCGATTGCTTCTAGTTCTTTTT
Found at i:94225354 original size:49 final size:49
Alignment explanation
Indices: 94225292--94225413 Score: 163
Period size: 49 Copynumber: 2.5 Consensus size: 49
94225282 TCTTTTCTTC
** *
94225292 CCTCTTTCTCAATCGGTTTCCCTTTGAATTATTGCTTTTAATTCTTTTT
1 CCTCTTTCTCAATCGGTTTCCCTTTGAACAATTGCTTCTAATTCTTTTT
* * * * * *
94225341 CCTCTTACCCAATCGGTTTTCTTTTGACCAATTGCTTCTAGTTCTTTTT
1 CCTCTTTCTCAATCGGTTTCCCTTTGAACAATTGCTTCTAATTCTTTTT
94225390 CCTCTTTCTCAATCGGTTTCCCTT
1 CCTCTTTCTCAATCGGTTTCCCTT
94225414 GACCGGTTGC
Statistics
Matches: 60, Mismatches: 13, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
49 60 1.00
ACGTcount: A:0.13, C:0.27, G:0.09, T:0.51
Consensus pattern (49 bp):
CCTCTTTCTCAATCGGTTTCCCTTTGAACAATTGCTTCTAATTCTTTTT
Found at i:94225442 original size:48 final size:48
Alignment explanation
Indices: 94225292--94225449 Score: 160
Period size: 49 Copynumber: 3.3 Consensus size: 48
94225282 TCTTTTCTTC
*** *
94225292 CCTCTTTCTCAATCGGTTTCCCTTTGAATTATTGCTT-TTAATTCTTTTT
1 CCTCTTTCTCAATCGGTTTCCC-TTGACCAATTGCTTCTT-GTTCTTTTT
* * ** *
94225341 CCTCTTACCCAATCGGTTTTCTTTTGACCAATTGCTTCTAGTTCTTTTT
1 CCTCTTTCTCAATCGG-TTTCCCTTGACCAATTGCTTCTTGTTCTTTTT
**
94225390 CCTCTTTCTCAATCGGTTTCCCTTGACCGGTTGCTTCTTGTT-TTTTT
1 CCTCTTTCTCAATCGGTTTCCCTTGACCAATTGCTTCTTGTTCTTTTT
*
94225437 CC-CTCTCTCAATC
1 CCTCTTTCTCAATC
94225450 AGTTCTTTGC
Statistics
Matches: 90, Mismatches: 17, Indels: 7
0.79 0.15 0.06
Matches are distributed among these distances:
46 10 0.11
47 7 0.08
48 21 0.23
49 47 0.52
50 5 0.06
ACGTcount: A:0.12, C:0.28, G:0.10, T:0.50
Consensus pattern (48 bp):
CCTCTTTCTCAATCGGTTTCCCTTGACCAATTGCTTCTTGTTCTTTTT
Found at i:94237520 original size:15 final size:16
Alignment explanation
Indices: 94237500--94237547 Score: 57
Period size: 15 Copynumber: 3.1 Consensus size: 16
94237490 CATTATGATA
94237500 TTGTATCTTGGATTT-
1 TTGTATCTTGGATTTC
*
94237515 TTGTATCTCAGG-TTTC
1 TTGTATCT-TGGATTTC
94237531 TT-TATCTTGGATTTC
1 TTGTATCTTGGATTTC
94237546 TT
1 TT
94237548 TGTCCCAGAA
Statistics
Matches: 28, Mismatches: 2, Indels: 6
0.78 0.06 0.17
Matches are distributed among these distances:
14 2 0.07
15 22 0.79
16 4 0.14
ACGTcount: A:0.12, C:0.12, G:0.17, T:0.58
Consensus pattern (16 bp):
TTGTATCTTGGATTTC
Found at i:94237539 original size:30 final size:29
Alignment explanation
Indices: 94237503--94237574 Score: 83
Period size: 30 Copynumber: 2.4 Consensus size: 29
94237493 TATGATATTG
* **
94237503 TATCTTGGATTTTTGTATCTCAGGTTTCTT
1 TATCTTGGATTTTT-TATCCCAGAATTCTT
*
94237533 TATCTTGGATTTCTTTGTCCCAGAATTCTT
1 TATCTTGGATTT-TTTATCCCAGAATTCTT
94237563 TATCTTGG-TTTT
1 TATCTTGGATTTT
94237575 CATGTCATCT
Statistics
Matches: 37, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
28 1 0.03
29 3 0.08
30 31 0.84
31 2 0.05
ACGTcount: A:0.14, C:0.15, G:0.15, T:0.56
Consensus pattern (29 bp):
TATCTTGGATTTTTTATCCCAGAATTCTT
Found at i:94241841 original size:29 final size:28
Alignment explanation
Indices: 94241786--94241900 Score: 131
Period size: 29 Copynumber: 4.0 Consensus size: 28
94241776 GTGAGCATGA
* * * *
94241786 ATATGAATGTGACTGGGCCTAACGGGCT
1 ATATAAATGTGATTGGGCCTAATGGGCC
94241814 ATATAAATGTGATTTGGGCCTAATGGGCC
1 ATATAAATGTGA-TTGGGCCTAATGGGCC
* *
94241843 ATATATAGGTGATTTGGGCCTAATGGGCC
1 ATATAAATGTGA-TTGGGCCTAATGGGCC
* * *
94241872 ATATGAATATGATTGGGCTTAATGGGCC
1 ATATAAATGTGATTGGGCCTAATGGGCC
94241900 A
1 A
94241901 GATATAGGTA
Statistics
Matches: 75, Mismatches: 11, Indels: 2
0.85 0.12 0.02
Matches are distributed among these distances:
28 27 0.36
29 48 0.64
ACGTcount: A:0.27, C:0.14, G:0.30, T:0.30
Consensus pattern (28 bp):
ATATAAATGTGATTGGGCCTAATGGGCC
Found at i:94241898 original size:57 final size:58
Alignment explanation
Indices: 94241799--94241909 Score: 161
Period size: 57 Copynumber: 1.9 Consensus size: 58
94241789 TGAATGTGAC
* * *
94241799 TGGGCCTAACGGGCTATATAAATGTGATTTGGGCCTAATGGGCCATATATAGGTGATT
1 TGGGCCTAACGGGCCATATAAATATGATTTGGGCCTAATGGGCCAGATATAGGTGATT
* * *
94241857 TGGGCCTAATGGGCCATATGAATATGA-TTGGGCTTAATGGGCCAGATATAGGT
1 TGGGCCTAACGGGCCATATAAATATGATTTGGGCCTAATGGGCCAGATATAGGT
94241910 ATGTGAATTT
Statistics
Matches: 47, Mismatches: 6, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
57 24 0.51
58 23 0.49
ACGTcount: A:0.26, C:0.14, G:0.31, T:0.30
Consensus pattern (58 bp):
TGGGCCTAACGGGCCATATAAATATGATTTGGGCCTAATGGGCCAGATATAGGTGATT
Found at i:94245912 original size:25 final size:25
Alignment explanation
Indices: 94245884--94245933 Score: 91
Period size: 25 Copynumber: 2.0 Consensus size: 25
94245874 AGGGTTACTG
94245884 ATATTTAGCTCGCATGAGCTTACCA
1 ATATTTAGCTCGCATGAGCTTACCA
*
94245909 ATATTTAGCTCGTATGAGCTTACCA
1 ATATTTAGCTCGCATGAGCTTACCA
94245934 TTTATAGATC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.28, C:0.22, G:0.16, T:0.34
Consensus pattern (25 bp):
ATATTTAGCTCGCATGAGCTTACCA
Found at i:94249896 original size:19 final size:20
Alignment explanation
Indices: 94249867--94249913 Score: 60
Period size: 19 Copynumber: 2.4 Consensus size: 20
94249857 TTGTAAGTAT
94249867 ATATATATGTGAAAATTTTG
1 ATATATATGTGAAAATTTTG
**
94249887 ATAT-TATGTGATTATTTTG
1 ATATATATGTGAAAATTTTG
94249906 ATGATATA
1 AT-ATATA
94249914 ACATGTTCTC
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
19 15 0.65
20 6 0.26
21 2 0.09
ACGTcount: A:0.36, C:0.00, G:0.15, T:0.49
Consensus pattern (20 bp):
ATATATATGTGAAAATTTTG
Found at i:94250517 original size:101 final size:101
Alignment explanation
Indices: 94250412--94250804 Score: 633
Period size: 101 Copynumber: 3.9 Consensus size: 101
94250402 AGATGGTTCA
* *
94250412 ATCACGTATGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGTCGCAAGTGTAGTA
1 ATCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGTCGCATGTGTAGTA
*
94250477 CTAAGTGCAGGCTACTATGCGTACCTGTTAACTTCG
66 CTAAGTGCAGGCTACTATGCGTACCCGTTAACTTCG
* *
94250513 ATCACGTGTGTAGTACTAAATGTAGGCTACTACGTGTACCAGATTGATAGGTCGCATGTGTAGTA
1 ATCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGTCGCATGTGTAGTA
*
94250578 CTAAGTGCAGGCTACTATGCGTACCCGATAACTTCG
66 CTAAGTGCAGGCTACTATGCGTACCCGTTAACTTCG
* * *
94250614 ATCACGTGTATAGTACTAAGTGCAGGCTATTAGGTGTACCAGATTGATAGGTCGCATGTGTAGTA
1 ATCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGTCGCATGTGTAGTA
* *
94250679 CTAAGTGCAAGCTACTATGCGTACCCGTTAAATTCG
66 CTAAGTGCAGGCTACTATGCGTACCCGTTAACTTCG
* * * * *
94250715 ATCACATGTGTACTACTAAGTCCAGGCTACAACGTGTACCAGATTGATAGGTTGCATGTGTAGTA
1 ATCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGTCGCATGTGTAGTA
*
94250780 CTAAGTGTAGGCTACTATGCGTACC
66 CTAAGTGCAGGCTACTATGCGTACC
94250805 AGAGAGCTTC
Statistics
Matches: 268, Mismatches: 24, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
101 268 1.00
ACGTcount: A:0.27, C:0.19, G:0.24, T:0.29
Consensus pattern (101 bp):
ATCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGTCGCATGTGTAGTA
CTAAGTGCAGGCTACTATGCGTACCCGTTAACTTCG
Found at i:94250547 original size:151 final size:151
Alignment explanation
Indices: 94250262--94250806 Score: 612
Period size: 151 Copynumber: 3.6 Consensus size: 151
94250252 TCGTTGTGAG
*
94250262 TCACATGTGTCGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGTCGCATGTGTAGTAC
1 TCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGTCGCATGTGTAGTAC
* *
94250327 TAAGTGCAGGCTACTAGGCGTACCCGTTAACTTCGATCACGTGTATAGTACTAAGTGTAGGCTAC
66 TAAGTGCAGGCTACTAGGCGTACCAGTTAACTTCGATCACGTGTGTAGTACTAAGTGTAGGCTAC
* *
94250392 TACGTGTATCAGATGGTTCAA
131 TACGTGTACCAGATAGTTCAA
* * *
94250413 TCACGTATGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGTCGCAAGTGTAGTAC
1 TCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGTCGCATGTGTAGTAC
* * *
94250478 TAAGTGCAGGCTACTATGCGTACCTGTTAACTTCGATCACGTGTGTAGTACTAAATGTAGGCTAC
66 TAAGTGCAGGCTACTAGGCGTACCAGTTAACTTCGATCACGTGTGTAGTACTAAGTGTAGGCTAC
* * *
94250543 TACGTGTACCAGATTGAT-AGG
131 TACGTGTACCAGATAGTTCA-A
* * * * * * * * * *
94250564 TCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGA-TAACTTCGATCACGTGTATAGT
1 TCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGA--TAGGTCGCATGTGTAGT
* * * * * * * * *
94250628 ACTAAGTGCAGGCTATTAGGTGTACCAGATTGA--TAGGTCGCATGTGTAGTACTAAGTGCAAGC
64 ACTAAGTGCAGGCTACTAGGCGTACCAG-TTAACTTCGATCACGTGTGTAGTACTAAGTGTAGGC
* * * * * *
94250691 TACTATGCGTACCCGTTAAATTCGA
128 TACTACGTGTACCAGAT-AGTTCAA
* * * *
94250716 TCACATGTGTACTACTAAGTCCAGGCTACAACGTGTACCAGATTGATAGGTTGCATGTGTAGTAC
1 TCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGTCGCATGTGTAGTAC
* *
94250781 TAAGTGTAGGCTACTATGCGTACCAG
66 TAAGTGCAGGCTACTAGGCGTACCAG
94250807 AGAGCTTCGG
Statistics
Matches: 323, Mismatches: 64, Indels: 14
0.81 0.16 0.03
Matches are distributed among these distances:
150 3 0.01
151 244 0.76
152 71 0.22
153 5 0.02
ACGTcount: A:0.27, C:0.19, G:0.25, T:0.29
Consensus pattern (151 bp):
TCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGTCGCATGTGTAGTAC
TAAGTGCAGGCTACTAGGCGTACCAGTTAACTTCGATCACGTGTGTAGTACTAAGTGTAGGCTAC
TACGTGTACCAGATAGTTCAA
Found at i:94251028 original size:16 final size:16
Alignment explanation
Indices: 94251007--94251038 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
94250997 AGAATGGAGT
94251007 AAGTGAAATTATGTAA
1 AAGTGAAATTATGTAA
*
94251023 AAGTGAAATTTTGTAA
1 AAGTGAAATTATGTAA
94251039 TAAAACAATT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.47, C:0.00, G:0.19, T:0.34
Consensus pattern (16 bp):
AAGTGAAATTATGTAA
Found at i:94252255 original size:13 final size:13
Alignment explanation
Indices: 94252237--94252261 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
94252227 AAATTGATGT
94252237 TATAATGTGTATC
1 TATAATGTGTATC
94252250 TATAATGTGTAT
1 TATAATGTGTAT
94252262 AAGTATGGGA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.04, G:0.16, T:0.48
Consensus pattern (13 bp):
TATAATGTGTATC
Found at i:94253984 original size:15 final size:15
Alignment explanation
Indices: 94253964--94254002 Score: 62
Period size: 15 Copynumber: 2.6 Consensus size: 15
94253954 TTTGATATTG
94253964 TATCTTGGATTTC-C
1 TATCTTGGATTTCTC
94253978 TTATCTTGGATTTCTC
1 -TATCTTGGATTTCTC
94253994 TATCTTGGA
1 TATCTTGGA
94254003 GATCCTGGTT
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
15 22 0.96
16 1 0.04
ACGTcount: A:0.15, C:0.18, G:0.15, T:0.51
Consensus pattern (15 bp):
TATCTTGGATTTCTC
Found at i:94257088 original size:50 final size:50
Alignment explanation
Indices: 94256959--94257302 Score: 244
Period size: 50 Copynumber: 6.9 Consensus size: 50
94256949 ATTCGTTGTG
* * ** * * **
94256959 AGTCACGTGTATAGTACTAAGTGCAGGCTACTATGCATACCCGTTAACTT-
1 AGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGAT-GGTTA
* * * * *
94257009 CGATCACGTGTGTAATACTAAGTGTAGGCTACTACATGTATCAGATGGTTA
1 AG-TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATGGTTA
* * *
94257060 AGTCATGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATA
1 AGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATGGTTA
* * * * * * * **
94257110 GGTCACATGTGTAGTACTAACTGCAGGCTACTATGCGTACCCGTTAACTT-
1 AGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGAT-GGTTA
* * * * * *
94257160 CGACACATGTATAGTACTAAGTGCAGGCTACTATGTGTATCAGATGGTTA
1 AGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATGGTTA
* * * * * *
94257210 AGTCA-GTGTGTAGTACTAAGTGCAGGATATTATGTGTACTAGATTGATA
1 AGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATGGTTA
* ** * * * *
94257259 GGTTGCATGTGTAGTACTAAGTGCAAGCTACTATGGGTACCAGA
1 AGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGA
94257303 GAGCTTCGGT
Statistics
Matches: 228, Mismatches: 61, Indels: 10
0.76 0.20 0.03
Matches are distributed among these distances:
49 40 0.18
50 153 0.67
51 35 0.15
ACGTcount: A:0.28, C:0.17, G:0.24, T:0.31
Consensus pattern (50 bp):
AGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATGGTTA
Found at i:94257277 original size:99 final size:100
Alignment explanation
Indices: 94257067--94257302 Score: 260
Period size: 99 Copynumber: 2.4 Consensus size: 100
94257057 TTAAGTCATG
* * *
94257067 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGTCACATGTGTAGTACTAACT
1 TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATGGATAAGTCACATGTGTAGTACTAACT
* * *
94257132 GCAGGCTACTATGCGTACCCGTTAACTTCGACACA
66 GCAGGATACTATGCGTACCAGTTAACTACGACACA
* * * * *
94257167 TGTATAGTACTAAGTGCAGGCTACTATGTGTATCAGATGGTTAAGTCA-GTGTGTAGTACTAAGT
1 TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATGGATAAGTCACATGTGTAGTACTAACT
* * * * * ***
94257231 GCAGGATATTATGTGTACTAGATTGA-TAGGTTGCA
66 GCAGGATACTATGCGTACCAG-TTAACTACGACACA
* *
94257266 TGTGTAGTACTAAGTGCAAGCTACTATGGGTACCAGA
1 TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGA
94257303 GAGCTTCGGT
Statistics
Matches: 112, Mismatches: 23, Indels: 3
0.81 0.17 0.02
Matches are distributed among these distances:
99 67 0.60
100 45 0.40
ACGTcount: A:0.28, C:0.16, G:0.25, T:0.31
Consensus pattern (100 bp):
TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATGGATAAGTCACATGTGTAGTACTAACT
GCAGGATACTATGCGTACCAGTTAACTACGACACA
Found at i:94257310 original size:149 final size:151
Alignment explanation
Indices: 94256960--94257299 Score: 504
Period size: 149 Copynumber: 2.3 Consensus size: 151
94256950 TTCGTTGTGA
* * * * *
94256960 GTCACGTGTATAGTACTAAGTGCAGGCTACTATGCATACCCGTTAACTTCGATCACGTGTGTAAT
1 GTCACATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGTTAACTTCGATCACATGTATAAT
* *
94257025 ACTAAGTGTAGGCTACTACATGTATCAGATGGTTAAGTCATGTGTGTAGTACTAAGTGCAGGCTA
66 ACTAAGTGCAGGCTACTACATGTATCAGATGGTTAAGTCATGTGTGTAGTACTAAGTGCAGGATA
94257090 CTACGTGTACCAGATTGATAG
131 CTACGTGTACCAGATTGATAG
* *
94257111 GTCACATGTGTAGTACTAACTGCAGGCTACTATGCGTACCCGTTAACTTCGA-CACATGTATAGT
1 GTCACATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGTTAACTTCGATCACATGTATAAT
**
94257175 ACTAAGTGCAGGCTACTATGTGTATCAGATGGTTAAGTCA-GTGTGTAGTACTAAGTGCAGGATA
66 ACTAAGTGCAGGCTACTACATGTATCAGATGGTTAAGTCATGTGTGTAGTACTAAGTGCAGGATA
* * *
94257239 TTATGTGTACTAGATTGATAG
131 CTACGTGTACCAGATTGATAG
** * *
94257260 GTTGCATGTGTAGTACTAAGTGCAAGCTACTATGGGTACC
1 GTCACATGTGTAGTACTAAGTGCAGGCTACTATGCGTACC
94257300 AGAGAGCTTC
Statistics
Matches: 170, Mismatches: 19, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
149 76 0.45
150 46 0.27
151 48 0.28
ACGTcount: A:0.28, C:0.17, G:0.24, T:0.31
Consensus pattern (151 bp):
GTCACATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGTTAACTTCGATCACATGTATAAT
ACTAAGTGCAGGCTACTACATGTATCAGATGGTTAAGTCATGTGTGTAGTACTAAGTGCAGGATA
CTACGTGTACCAGATTGATAG
Found at i:94257523 original size:16 final size:16
Alignment explanation
Indices: 94257502--94257533 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
94257492 AGAATGGAGT
94257502 AAGTGAAATTATGTAA
1 AAGTGAAATTATGTAA
*
94257518 AAGTGAAATTTTGTAA
1 AAGTGAAATTATGTAA
94257534 TAAAACAATT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.47, C:0.00, G:0.19, T:0.34
Consensus pattern (16 bp):
AAGTGAAATTATGTAA
Found at i:94259599 original size:42 final size:42
Alignment explanation
Indices: 94259513--94259619 Score: 117
Period size: 42 Copynumber: 2.5 Consensus size: 42
94259503 GTATTAATGT
* * * *
94259513 CATATCCCGGATATGGTCTTACATGAAATATCATATCGACGC
1 CATATCCCAGACATGGTCTTATATGAAATATCATACCGACGC
* * * *
94259555 CATGTCCCTGGCATGGTCTTATATGAAATCA-CATACCGATGC
1 CATATCCCAGACATGGTCTTATATGAAAT-ATCATACCGACGC
*
94259597 CATATCCCAGATATGGTCTTATA
1 CATATCCCAGACATGGTCTTATA
94259620 CGGAATCTCA
Statistics
Matches: 53, Mismatches: 11, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
42 52 0.98
43 1 0.02
ACGTcount: A:0.29, C:0.24, G:0.17, T:0.30
Consensus pattern (42 bp):
CATATCCCAGACATGGTCTTATATGAAATATCATACCGACGC
Found at i:94265015 original size:11 final size:11
Alignment explanation
Indices: 94264999--94265023 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
94264989 AATAAAATCA
94264999 TGTATTTCATG
1 TGTATTTCATG
94265010 TGTATTTCATG
1 TGTATTTCATG
94265021 TGT
1 TGT
94265024 CGATGTTATG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.16, C:0.08, G:0.20, T:0.56
Consensus pattern (11 bp):
TGTATTTCATG
Found at i:94267008 original size:44 final size:44
Alignment explanation
Indices: 94266953--94267044 Score: 121
Period size: 44 Copynumber: 2.1 Consensus size: 44
94266943 CCGAAGTAAC
* * *
94266953 AGTAGCAGTACGACACACATGGTGCCTCGTCGACTCAAAGACGA
1 AGTAACAGTACGACACACATAGTGCCTCATCGACTCAAAGACGA
** * *
94266997 AGTAACAGTACGACACTTATAGTGCCTCATCGACTCAAGGTCGA
1 AGTAACAGTACGACACACATAGTGCCTCATCGACTCAAAGACGA
94267041 AGTA
1 AGTA
94267045 CCCCTAAACA
Statistics
Matches: 41, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
44 41 1.00
ACGTcount: A:0.33, C:0.25, G:0.23, T:0.20
Consensus pattern (44 bp):
AGTAACAGTACGACACACATAGTGCCTCATCGACTCAAAGACGA
Found at i:94275913 original size:16 final size:16
Alignment explanation
Indices: 94275894--94275925 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
94275884 TTAATTATAA
*
94275894 TTTTATTCTATTACAG
1 TTTTATTCCATTACAG
94275910 TTTTATTCCATTACAG
1 TTTTATTCCATTACAG
94275926 CAAATTAAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.25, C:0.16, G:0.06, T:0.53
Consensus pattern (16 bp):
TTTTATTCCATTACAG
Found at i:94276619 original size:40 final size:40
Alignment explanation
Indices: 94276559--94276767 Score: 217
Period size: 41 Copynumber: 5.1 Consensus size: 40
94276549 ACAAAAATTT
* *
94276559 TAAAATACAGAGCAATAGCGGCGTCTTAAGG-AAAACGCCAC
1 TAAAA-ACAGAGCAATAGCGGCG-CTTTAGGTAAAACGCCGC
* * *
94276600 TAAAAACAGAGCAACAGCGGCGTTTTTTA-TTAAAACGCCGC
1 TAAAAACAGAGCAATAGCGGCG--CTTTAGGTAAAACGCCGC
*
94276641 TAAAAATAGAG-AATTAGCGGCGCTTTAGGTAAAACGCCGC
1 TAAAAACAGAGCAA-TAGCGGCGCTTTAGGTAAAACGCCGC
* * *
94276681 TAAAAACTAGATCATTAGCGGCGCTTTGGGTAAAACGCCGC
1 TAAAAAC-AGAGCAATAGCGGCGCTTTAGGTAAAACGCCGC
* * * *
94276722 TAAAAACCAGATCATTAGCGGCGCTTTTGGTAAAATGCCGC
1 TAAAAA-CAGAGCAATAGCGGCGCTTTAGGTAAAACGCCGC
94276763 TAAAA
1 TAAAA
94276768 GTCATAACCC
Statistics
Matches: 146, Mismatches: 15, Indels: 14
0.83 0.09 0.08
Matches are distributed among these distances:
39 4 0.03
40 35 0.24
41 105 0.72
42 2 0.01
ACGTcount: A:0.37, C:0.21, G:0.22, T:0.21
Consensus pattern (40 bp):
TAAAAACAGAGCAATAGCGGCGCTTTAGGTAAAACGCCGC
Found at i:94276675 original size:81 final size:82
Alignment explanation
Indices: 94276566--94276767 Score: 223
Period size: 81 Copynumber: 2.5 Consensus size: 82
94276556 TTTTAAAATA
* * * *
94276566 CAGAGCAA-TAGCGGCGTCTTAAGG-AAAACGCCACTAAAAAC-AGAGCAACAGCGGCGTTTTTT
1 CAGAG-AATTAGCGGCG-CTTTAGGTAAAACGCCGCTAAAAACTAGAGCAACAGCGGCG-CTTTG
*
94276628 ATTAAAACGCCGCTAAAAA-
63 AGTAAAACGCCGCTAAAAAC
* * ** *
94276647 TAGAGAATTAGCGGCGCTTTAGGTAAAACGCCGCTAAAAACTAGATCATTAGCGGCGCTTTGGGT
1 CAGAGAATTAGCGGCGCTTTAGGTAAAACGCCGCTAAAAACTAGAGCAACAGCGGCGCTTTGAGT
94276712 AAAACGCCGCTAAAAAC
66 AAAACGCCGCTAAAAAC
** * *
94276729 CAGATCATTAGCGGCGCTTTTGGTAAAATGCCGCTAAAA
1 CAGAGAATTAGCGGCGCTTTAGGTAAAACGCCGCTAAAA
94276768 GTCATAACCC
Statistics
Matches: 102, Mismatches: 15, Indels: 7
0.82 0.12 0.06
Matches are distributed among these distances:
80 8 0.08
81 48 0.47
82 46 0.45
ACGTcount: A:0.36, C:0.21, G:0.23, T:0.20
Consensus pattern (82 bp):
CAGAGAATTAGCGGCGCTTTAGGTAAAACGCCGCTAAAAACTAGAGCAACAGCGGCGCTTTGAGT
AAAACGCCGCTAAAAAC
Found at i:94277014 original size:36 final size:39
Alignment explanation
Indices: 94276944--94277019 Score: 104
Period size: 36 Copynumber: 2.0 Consensus size: 39
94276934 ATAGTTTAAG
* * *
94276944 ATATATGGTTTAGGGTTTAAGCAGGTTTATGAGTTAACT
1 ATATATGGTTTAAGATTTAAGCAGGTTTAGGAGTTAACT
94276983 ATATATGGTTTAAGATTT-A-C-GGTTTAGGAGTTAACT
1 ATATATGGTTTAAGATTTAAGCAGGTTTAGGAGTTAACT
94277019 A
1 A
94277020 GTATTTGAAG
Statistics
Matches: 34, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
36 16 0.47
37 1 0.03
38 1 0.03
39 16 0.47
ACGTcount: A:0.30, C:0.05, G:0.24, T:0.41
Consensus pattern (39 bp):
ATATATGGTTTAAGATTTAAGCAGGTTTAGGAGTTAACT
Found at i:94277593 original size:15 final size:15
Alignment explanation
Indices: 94277575--94277604 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
94277565 TTTAATTTAG
*
94277575 AAGATAAATGTATAT
1 AAGATAAATATATAT
94277590 AAGATAAATATATAT
1 AAGATAAATATATAT
94277605 TATTATTTGA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.57, C:0.00, G:0.10, T:0.33
Consensus pattern (15 bp):
AAGATAAATATATAT
Found at i:94277639 original size:24 final size:24
Alignment explanation
Indices: 94277578--94277641 Score: 64
Period size: 20 Copynumber: 2.8 Consensus size: 24
94277568 AATTTAGAAG
* *
94277578 ATAAATGTATATAAGATAAATATAT
1 ATAAATATATATATGA-AAATATAT
*
94277603 AT---TAT-TATTTGAAAATATAT
1 ATAAATATATATATGAAAATATAT
94277623 ATAAATATATATATGAAAA
1 ATAAATATATATATGAAAA
94277642 GTGGTTTAGT
Statistics
Matches: 31, Mismatches: 4, Indels: 9
0.70 0.09 0.20
Matches are distributed among these distances:
20 10 0.32
21 5 0.16
22 2 0.06
23 3 0.10
24 9 0.29
25 2 0.06
ACGTcount: A:0.55, C:0.00, G:0.06, T:0.39
Consensus pattern (24 bp):
ATAAATATATATATGAAAATATAT
Found at i:94284599 original size:21 final size:21
Alignment explanation
Indices: 94284570--94284609 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
94284560 GTTTTTATAT
*
94284570 TTTGGTTCAACTTAAGTATTA
1 TTTGATTCAACTTAAGTATTA
94284591 TTTGATTCAACTTAAGTAT
1 TTTGATTCAACTTAAGTAT
94284610 GAATTAATTT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.30, C:0.10, G:0.12, T:0.47
Consensus pattern (21 bp):
TTTGATTCAACTTAAGTATTA
Found at i:94291159 original size:43 final size:43
Alignment explanation
Indices: 94291026--94291143 Score: 200
Period size: 44 Copynumber: 2.7 Consensus size: 43
94291016 CTGGGCAAAT
*
94291026 TAGCGGCGTTTTTTAAAAAAGCGCCGCTAAAAGTACAGGTCTA
1 TAGCGGCGTTTTTTTAAAAAGCGCCGCTAAAAGTACAGGTCTA
* *
94291069 TAGTGGCGTTTTTCTACAAAAGCGCCGCTAAAAGTACAGGTCTA
1 TAGCGGCGTTTTTTTA-AAAAGCGCCGCTAAAAGTACAGGTCTA
94291113 TAGCGGCGTTTTTTTAAAAAGCGCCGCTAAA
1 TAGCGGCGTTTTTTTAAAAAGCGCCGCTAAA
94291144 GTTCTTGGCC
Statistics
Matches: 69, Mismatches: 5, Indels: 2
0.91 0.07 0.03
Matches are distributed among these distances:
43 28 0.41
44 41 0.59
ACGTcount: A:0.31, C:0.19, G:0.23, T:0.27
Consensus pattern (43 bp):
TAGCGGCGTTTTTTTAAAAAGCGCCGCTAAAAGTACAGGTCTA
Found at i:94291168 original size:43 final size:43
Alignment explanation
Indices: 94291034--94291184 Score: 126
Period size: 44 Copynumber: 3.5 Consensus size: 43
94291024 ATTAGCGGCG
* * *** *
94291034 TTTTTTAAAAAAGCGCCGCTAAAAGTACAGGTCTATAGTGGCGT
1 TTTTTTACAAAAGCGCCGCT-AAAGTACAGGCCTATAGCAACAT
* * ** *
94291078 TTTTCTACAAAAGCGCCGCTAAAAGTACAGGTCTATAGCGGCGT
1 TTTTTTACAAAAGCGCCGCT-AAAGTACAGGCCTATAGCAACAT
* *
94291122 TTTTTTA-AAAAGCGCCGCTAAAGTTCTTGGCCTATAGCAACA-
1 TTTTTTACAAAAGCGCCGCTAAAGTAC-AGGCCTATAGCAACAT
* *
94291164 TTTTTTAGAAAAACGCCGCTA
1 TTTTTTACAAAAGCGCCGCTA
94291185 TAGACCTGTA
Statistics
Matches: 94, Mismatches: 11, Indels: 5
0.85 0.10 0.05
Matches are distributed among these distances:
42 13 0.14
43 34 0.36
44 47 0.50
ACGTcount: A:0.31, C:0.20, G:0.20, T:0.29
Consensus pattern (43 bp):
TTTTTTACAAAAGCGCCGCTAAAGTACAGGCCTATAGCAACAT
Found at i:94296871 original size:26 final size:26
Alignment explanation
Indices: 94296835--94296908 Score: 85
Period size: 26 Copynumber: 2.8 Consensus size: 26
94296825 GAGCTCCTGG
* *
94296835 TTAATGGCTCTTCGTGAACTTCCCGT
1 TTAAAGGCTCTTCGTGAACTTCCCGA
* *
94296861 TTAAAGGCTCTTCGTGAGCTTCCTGA
1 TTAAAGGCTCTTCGTGAACTTCCCGA
* * *
94296887 TTAAAAGTTCTACGTGAACTTC
1 TTAAAGGCTCTTCGTGAACTTC
94296909 TTGATTATGG
Statistics
Matches: 40, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
26 40 1.00
ACGTcount: A:0.22, C:0.23, G:0.19, T:0.36
Consensus pattern (26 bp):
TTAAAGGCTCTTCGTGAACTTCCCGA
Found at i:94299993 original size:20 final size:21
Alignment explanation
Indices: 94299963--94300004 Score: 61
Period size: 20 Copynumber: 2.0 Consensus size: 21
94299953 TGTGCGTGGG
94299963 AATGAAGAGAA-GGAATGAGAA
1 AATGAAGAGAATGGAA-GAGAA
94299984 AATG-AGAGAATGGAAGAGAA
1 AATGAAGAGAATGGAAGAGAA
94300004 A
1 A
94300005 TTTTAAATGA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
20 12 0.60
21 8 0.40
ACGTcount: A:0.57, C:0.00, G:0.33, T:0.10
Consensus pattern (21 bp):
AATGAAGAGAATGGAAGAGAA
Found at i:94305989 original size:47 final size:47
Alignment explanation
Indices: 94305935--94306449 Score: 742
Period size: 47 Copynumber: 11.0 Consensus size: 47
94305925 TTAGGATTTT
** *
94305935 ATGTGATGAATGTGAATGTGTATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * * *
94305982 ATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCTGAATGGACA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * *
94306029 ATGTGGTGAATATGAACATGTATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * *
94306076 ATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCTGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * *
94306123 ATGTGGTGAATATGAACATGTATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
94306170 ATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * *
94306217 ATGTGGTGAATATGAACATGCATATATGTGATAAGGCCGAATGGCCT
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
94306264 ATGTGATGAATGTGAACATGTATATATGTGATGAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
94306311 ATGTGATGAATGTGAGCATGCATATATATGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * *
94306358 ATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCGAATGACCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * * *
94306405 ATGTGGTGAATATGAACATGCATATATGTGGTAAAGCCGAATGGC
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGC
94306450 TAGTGTGAAA
Statistics
Matches: 413, Mismatches: 55, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
47 413 1.00
ACGTcount: A:0.32, C:0.11, G:0.30, T:0.27
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
Found at i:94306225 original size:25 final size:25
Alignment explanation
Indices: 94306150--94306225 Score: 63
Period size: 23 Copynumber: 3.2 Consensus size: 25
94306140 ATGTATATAT
94306150 GTGATAAGGCCGAATGGCCAATGTG
1 GTGATAAGGCCGAATGGCCAATGTG
* * * *
94306175 ATGA-ATGTG-AGCAT-G-CATATGT-
1 GTGATAAG-GCCGAATGGCCA-ATGTG
94306197 GTGATAAGGCCGAATGGCCAATGTG
1 GTGATAAGGCCGAATGGCCAATGTG
94306222 GTGA
1 GTGA
94306226 ATATGAACAT
Statistics
Matches: 36, Mismatches: 8, Indels: 14
0.62 0.14 0.24
Matches are distributed among these distances:
22 6 0.17
23 10 0.28
24 10 0.28
25 10 0.28
ACGTcount: A:0.29, C:0.13, G:0.34, T:0.24
Consensus pattern (25 bp):
GTGATAAGGCCGAATGGCCAATGTG
Found at i:94306457 original size:94 final size:94
Alignment explanation
Indices: 94305956--94306449 Score: 835
Period size: 94 Copynumber: 5.3 Consensus size: 94
94305946 GTGAATGTGT
*
94305956 ATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCTG
1 ATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCG
* *
94306021 AATGGACAATGTGGTGAATATGAACATGT
66 AATGGCCAATGTGGTGAATATGAACATGC
*
94306050 ATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCTG
1 ATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCG
*
94306115 AATGGCCAATGTGGTGAATATGAACATGT
66 AATGGCCAATGTGGTGAATATGAACATGC
94306144 ATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCG
1 ATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCG
94306209 AATGGCCAATGTGGTGAATATGAACATGC
66 AATGGCCAATGTGGTGAATATGAACATGC
* * * * *
94306238 ATATATGTGATAAGGCCGAATGGCCTATGTGATGAATGTGAACATGTATATATGTGATGAGGCCG
1 ATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCG
* * *
94306303 AATGGCCAATGTGATGAATGTGAGCATGC
66 AATGGCCAATGTGGTGAATATGAACATGC
*
94306332 ATATATATGATAAGGCCGAATGGCCAATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCG
1 ATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCG
*
94306397 AATGACCAATGTGGTGAATATGAACATGC
66 AATGGCCAATGTGGTGAATATGAACATGC
* *
94306426 ATATATGTGGTAAAGCCGAATGGC
1 ATATATGTGATAAGGCCGAATGGC
94306450 TAGTGTGAAA
Statistics
Matches: 376, Mismatches: 24, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
94 376 1.00
ACGTcount: A:0.32, C:0.12, G:0.29, T:0.27
Consensus pattern (94 bp):
ATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCG
AATGGCCAATGTGGTGAATATGAACATGC
Found at i:94306662 original size:37 final size:37
Alignment explanation
Indices: 94306612--94306763 Score: 241
Period size: 37 Copynumber: 4.1 Consensus size: 37
94306602 GGAAATATAT
* * *
94306612 TCCGGGTGAGACCCGATGACTACGTGTGGAGAGTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
94306649 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
*
94306686 CCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
* * *
94306723 TCCGGGTAAGACCCGATAACTTCGTGTGGAGATTTCG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
94306760 TCCG
1 TCCG
94306764 AGCTAAAGGT
Statistics
Matches: 107, Mismatches: 8, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
37 107 1.00
ACGTcount: A:0.21, C:0.21, G:0.33, T:0.25
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
Found at i:94308069 original size:40 final size:40
Alignment explanation
Indices: 94308012--94308350 Score: 489
Period size: 40 Copynumber: 8.5 Consensus size: 40
94308002 GAGTGAAATG
*
94308012 TCCGGGCTAAATCCCGAAGAGCATTCGTGCTAGTGATGTA
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTA
* *
94308052 TCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTA
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTA
*
94308092 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATA
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTA
* *
94308132 TCCGGGCTAAATTCCGAAGAGCATTCGTGCTAGTGATGTA
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTA
* *
94308172 TCCGGGCTAAGTCCCGAAGAGAATTCATGCTAGTGATGTA
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTA
*
94308212 TCCGGGCTAAGTCTCGAAGAGCATTCGTGCTAGTGATGTA
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTA
* ** *
94308252 TCCGGACTAAGTTTCGAAGAGCATTCGTGCTAGTGATATA
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTA
* ** * * * *
94308292 TCCGTGCTAAACCCCGAAGAGCATTTGTGCTCGTGTTATA
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTA
*
94308332 TCCGGGCTAGGTCCCGAAG
1 TCCGGGCTAAGTCCCGAAG
94308351 GGCAATCATG
Statistics
Matches: 267, Mismatches: 32, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
40 267 1.00
ACGTcount: A:0.24, C:0.22, G:0.27, T:0.27
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTA
Found at i:94312519 original size:47 final size:47
Alignment explanation
Indices: 94312465--94312979 Score: 744
Period size: 47 Copynumber: 11.0 Consensus size: 47
94312455 TTAGGATTTT
** *
94312465 ATGTGATGAATGTGAATGTGTATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * *
94312512 ATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCTGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * *
94312559 ATGTGGTGAATATGAACATGTATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * *
94312606 ATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCTGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * *
94312653 ATGTGGTGAATATGAACATGTATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
94312700 ATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * *
94312747 ATGTGGTGAATATGAACATGCATATATGTGATAAGGCCGAATGGCCT
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
94312794 ATGTGATGAATGTGAACATGTATATATGTGATGAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * *
94312841 ATGTGATGAATGTGAGCATACATATATATGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
94312888 ATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * *
94312935 ATGTGTTGAATATGAACATGCATATATGTCG-TAAAGCCGAATGGC
1 ATGTGATGAATGTGAACATGCATATATGT-GATAAGGCCGAATGGC
94312980 TAGTGTGAAA
Statistics
Matches: 415, Mismatches: 52, Indels: 2
0.88 0.11 0.00
Matches are distributed among these distances:
47 414 1.00
48 1 0.00
ACGTcount: A:0.32, C:0.11, G:0.29, T:0.27
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
Found at i:94312755 original size:25 final size:25
Alignment explanation
Indices: 94312680--94312755 Score: 63
Period size: 23 Copynumber: 3.2 Consensus size: 25
94312670 ATGTATATAT
94312680 GTGATAAGGCCGAATGGCCAATGTG
1 GTGATAAGGCCGAATGGCCAATGTG
* * * *
94312705 ATGA-ATGTG-AGCAT-G-CATATGT-
1 GTGATAAG-GCCGAATGGCCA-ATGTG
94312727 GTGATAAGGCCGAATGGCCAATGTG
1 GTGATAAGGCCGAATGGCCAATGTG
94312752 GTGA
1 GTGA
94312756 ATATGAACAT
Statistics
Matches: 36, Mismatches: 8, Indels: 14
0.62 0.14 0.24
Matches are distributed among these distances:
22 6 0.17
23 10 0.28
24 10 0.28
25 10 0.28
ACGTcount: A:0.29, C:0.13, G:0.34, T:0.24
Consensus pattern (25 bp):
GTGATAAGGCCGAATGGCCAATGTG
Found at i:94312987 original size:94 final size:94
Alignment explanation
Indices: 94312486--94312979 Score: 828
Period size: 94 Copynumber: 5.3 Consensus size: 94
94312476 GTGAATGTGT
*
94312486 ATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCTG
1 ATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCG
*
94312551 AATGGCCAATGTGGTGAATATGAACATGT
66 AATGGCCAATGTGGTGAATATGAACATGC
*
94312580 ATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCTG
1 ATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCG
*
94312645 AATGGCCAATGTGGTGAATATGAACATGT
66 AATGGCCAATGTGGTGAATATGAACATGC
94312674 ATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCG
1 ATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCG
94312739 AATGGCCAATGTGGTGAATATGAACATGC
66 AATGGCCAATGTGGTGAATATGAACATGC
* * * * *
94312768 ATATATGTGATAAGGCCGAATGGCCTATGTGATGAATGTGAACATGTATATATGTGATGAGGCCG
1 ATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCG
* * * *
94312833 AATGGCCAATGTGATGAATGTGAGCATAC
66 AATGGCCAATGTGGTGAATATGAACATGC
*
94312862 ATATATATGATAAGGCCGAATGGCCAATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCG
1 ATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCG
*
94312927 AATGGCCAATGTGTTGAATATGAACATGC
66 AATGGCCAATGTGGTGAATATGAACATGC
*
94312956 ATATATGTCG-TAAAGCCGAATGGC
1 ATATATGT-GATAAGGCCGAATGGC
94312980 TAGTGTGAAA
Statistics
Matches: 376, Mismatches: 23, Indels: 2
0.94 0.06 0.00
Matches are distributed among these distances:
94 375 1.00
95 1 0.00
ACGTcount: A:0.32, C:0.12, G:0.29, T:0.27
Consensus pattern (94 bp):
ATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCG
AATGGCCAATGTGGTGAATATGAACATGC
Found at i:94313192 original size:37 final size:37
Alignment explanation
Indices: 94313142--94313293 Score: 241
Period size: 37 Copynumber: 4.1 Consensus size: 37
94313132 GGAAATATAT
* * *
94313142 TCCGGGTGAGACCCGATGACTACGTGTGGAGAGTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
94313179 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
*
94313216 CCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
* * *
94313253 TCCGGGTAAGACCCGATAACTTCGTGTGGAGATTTCG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
94313290 TCCG
1 TCCG
94313294 AGCTAAAGGT
Statistics
Matches: 107, Mismatches: 8, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
37 107 1.00
ACGTcount: A:0.21, C:0.21, G:0.33, T:0.25
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
Found at i:94317645 original size:15 final size:15
Alignment explanation
Indices: 94317612--94317646 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
94317602 TAAAGATTAT
* *
94317612 AATAATAAAAGTAAT
1 AATAATAAAAGAAAG
94317627 AATAATAAAAGAAAG
1 AATAATAAAAGAAAG
94317642 AATAA
1 AATAA
94317647 GGAAAAAAGA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.71, C:0.00, G:0.09, T:0.20
Consensus pattern (15 bp):
AATAATAAAAGAAAG
Found at i:94328993 original size:6 final size:6
Alignment explanation
Indices: 94328978--94329048 Score: 72
Period size: 6 Copynumber: 11.7 Consensus size: 6
94328968 ATCTTATTTA
* * * *
94328978 TTTA-T TTTATT TTTATT TTTATT TTGATT TTGATT TTGATT TTGATT
1 TTTATT TTTATT TTTATT TTTATT TTTATT TTTATT TTTATT TTTATT
*
94329025 TTGATT TTTAGTTT TTTATT TTTA
1 TTTATT TTTA--TT TTTATT TTTA
94329049 ATTCTTAGAC
Statistics
Matches: 61, Mismatches: 2, Indels: 5
0.90 0.03 0.07
Matches are distributed among these distances:
5 4 0.07
6 51 0.84
8 6 0.10
ACGTcount: A:0.17, C:0.00, G:0.08, T:0.75
Consensus pattern (6 bp):
TTTATT
Found at i:94328999 original size:12 final size:12
Alignment explanation
Indices: 94328982--94329039 Score: 80
Period size: 12 Copynumber: 4.8 Consensus size: 12
94328972 TATTTATTTA
*
94328982 TTTTATTTTTAT
1 TTTTATTTTGAT
94328994 TTTTATTTTGAT
1 TTTTATTTTGAT
*
94329006 TTTGATTTTGAT
1 TTTTATTTTGAT
*
94329018 TTTGATTTTGAT
1 TTTTATTTTGAT
94329030 TTTTAGTTTT
1 TTTTA-TTTT
94329040 TTATTTTTAA
Statistics
Matches: 42, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
12 38 0.90
13 4 0.10
ACGTcount: A:0.16, C:0.00, G:0.10, T:0.74
Consensus pattern (12 bp):
TTTTATTTTGAT
Found at i:94329013 original size:18 final size:18
Alignment explanation
Indices: 94328978--94329039 Score: 90
Period size: 18 Copynumber: 3.4 Consensus size: 18
94328968 ATCTTATTTA
*
94328978 TTTATTTT-ATTTTTATT
1 TTTATTTTGATTTTGATT
94328995 TTTATTTTGATTTTGATT
1 TTTATTTTGATTTTGATT
*
94329013 TTGATTTTGATTTTGATT
1 TTTATTTTGATTTTGATT
94329031 TTTAGTTTT
1 TTTA-TTTT
94329040 TTATTTTTAA
Statistics
Matches: 40, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
17 8 0.20
18 28 0.70
19 4 0.10
ACGTcount: A:0.16, C:0.00, G:0.10, T:0.74
Consensus pattern (18 bp):
TTTATTTTGATTTTGATT
Found at i:94337152 original size:40 final size:40
Alignment explanation
Indices: 94337028--94337252 Score: 229
Period size: 40 Copynumber: 5.6 Consensus size: 40
94337018 TATTCGAATG
* * * *
94337028 ATATTCGGGCTAAGTCTCGAAGGCTTTTGTGCTAGGTGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTA-GTGACT
* * * * * *
94337069 ATAAT-CGGACTAAGATCTGAAGCCATTCGTGCGAGTTG-CT
1 AT-ATCCGGGCTAAGACCCGAAGGCATTTGTGCTAG-TGACT
* * *
94337109 ATATTCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGACT
* *
94337149 ATATCCGGGCTAAAACCCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGACT
* * *
94337189 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGACT
* *
94337229 ACATCCAGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGC
94337253 CTTGTGCAAG
Statistics
Matches: 152, Mismatches: 28, Indels: 9
0.80 0.15 0.05
Matches are distributed among these distances:
39 3 0.02
40 123 0.81
41 24 0.16
42 2 0.01
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGACT
Found at i:94337208 original size:80 final size:80
Alignment explanation
Indices: 94337028--94337288 Score: 251
Period size: 80 Copynumber: 3.3 Consensus size: 80
94337018 TATTCGAATG
* * * * * *
94337028 ATATTCGGGCTAAGTCTCGAAGGCTTTTGTGCTAGGTGACTATAAT-CGGACTAAGATCTGAAGC
1 ATATTCGGGCTAAGTCCCGAAGGCATTTGTGCTA-GTGACTAT-ATCCGGGCTAAGACCCGAAGG
*
94337092 CATTCGTGCGAGTTGCT
64 CATTCGTGCGAGTCGCT
* * * *
94337109 ATATTCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGATTATATCCGGGCTAAAACCCGAAGGCA
1 ATATTCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGACCCGAAGGCA
* *
94337174 TTTGTGCTAG-CGACT
66 TTCGTGCGAGTCG-CT
* * * * * *
94337189 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACCACATCCAGGCTAAGACCCGAAGGCC
1 ATATTCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGACCCGAAGGCA
* * *
94337254 TT-GTGCAAGTAGTT
66 TTCGTGCGAGTCGCT
* *
94337268 ATA-TCCGGCTAAATCCCGAAG
1 ATATTCGGGCTAAGTCCCGAAG
94337289 ATTTCTTGAG
Statistics
Matches: 148, Mismatches: 29, Indels: 9
0.80 0.16 0.05
Matches are distributed among these distances:
78 15 0.10
79 13 0.09
80 89 0.60
81 31 0.21
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.26
Consensus pattern (80 bp):
ATATTCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCGCT
Found at i:94340469 original size:21 final size:20
Alignment explanation
Indices: 94340441--94340480 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 20
94340431 CAAAACTTGT
*
94340441 ATAACTATCATCAAACATTC
1 ATAACTATAATCAAACATTC
*
94340461 ATAATCTATAATCAATCATT
1 ATAA-CTATAATCAAACATT
94340481 AAAATGCATG
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 4 0.24
21 13 0.76
ACGTcount: A:0.45, C:0.20, G:0.00, T:0.35
Consensus pattern (20 bp):
ATAACTATAATCAAACATTC
Found at i:94344786 original size:40 final size:40
Alignment explanation
Indices: 94344708--94344797 Score: 119
Period size: 40 Copynumber: 2.2 Consensus size: 40
94344698 TGAGGAATTG
* * *
94344708 TATCCGGGCTTAAAGACCCGCAGGCTATATGCTGGAATGT
1 TATCCGGGCTTAAAGACCCACAGGCTATATGCTAGAATGC
*
94344748 TATCCGGGCTTAAAGACCCACAGGCT-TCGTGCTAGAATGC
1 TATCCGGGCTTAAAGACCCACAGGCTAT-ATGCTAGAATGC
*
94344788 TATCCAGGCT
1 TATCCGGGCT
94344798 AGAGACTCGC
Statistics
Matches: 44, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
39 1 0.02
40 43 0.98
ACGTcount: A:0.24, C:0.26, G:0.26, T:0.24
Consensus pattern (40 bp):
TATCCGGGCTTAAAGACCCACAGGCTATATGCTAGAATGC
Found at i:94346120 original size:17 final size:18
Alignment explanation
Indices: 94346098--94346131 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
94346088 AGCCCAATTG
94346098 AAATTGC-AAAATTAAAT
1 AAATTGCGAAAATTAAAT
94346115 AAATTGCGAAAATTAAA
1 AAATTGCGAAAATTAAA
94346132 ATGGAGAATA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 7 0.44
18 9 0.56
ACGTcount: A:0.59, C:0.06, G:0.09, T:0.26
Consensus pattern (18 bp):
AAATTGCGAAAATTAAAT
Found at i:94346904 original size:10 final size:10
Alignment explanation
Indices: 94346856--94346915 Score: 61
Period size: 10 Copynumber: 6.0 Consensus size: 10
94346846 TTAAATTCTA
94346856 AAAGATAAAT
1 AAAGATAAAT
*
94346866 ACAA-ATAATT
1 A-AAGATAAAT
* *
94346876 AAATATAATT
1 AAAGATAAAT
94346886 AAAGATAAAT
1 AAAGATAAAT
94346896 AAAGATAAAT
1 AAAGATAAAT
94346906 GAAA-ATAAAT
1 -AAAGATAAAT
94346916 CCTAAAATTA
Statistics
Matches: 44, Mismatches: 3, Indels: 6
0.83 0.06 0.11
Matches are distributed among these distances:
9 2 0.05
10 37 0.84
11 5 0.11
ACGTcount: A:0.67, C:0.02, G:0.07, T:0.25
Consensus pattern (10 bp):
AAAGATAAAT
Found at i:94347742 original size:96 final size:97
Alignment explanation
Indices: 94347573--94347763 Score: 222
Period size: 96 Copynumber: 2.0 Consensus size: 97
94347563 ATTTAATTTA
* * * * *
94347573 TTTATTTTTACTTAGGAATATATTAAACCTTTTGACCCGAAGAAAGATGACAGCCAAGCACCCCA
1 TTTATTTTTACGTAAGAACATATTAAACCTTTTGACCCGAAGAAAGACGACAGCCAAGCAACCCA
** * *
94347638 TTCTGGTTACTCAGCCCAACATACTCTTAATT
66 CCCAGGTTACTCAGCCCAACACACTCTTAATT
* ** * * *
94347670 TTTATTTTT-CGTAAGAACATATTGAACCTTTTGACGTGAAGAGAGACGACAGTCAAGCAACTCA
1 TTTATTTTTACGTAAGAACATATTAAACCTTTTGACCCGAAGAAAGACGACAGCCAAGCAACCCA
* *
94347734 CCCAGGTTACTCAGCCTAACACATTCTTAA
66 CCCAGGTTACTCAGCCCAACACACTCTTAA
94347764 AAATTAATTT
Statistics
Matches: 77, Mismatches: 17, Indels: 1
0.81 0.18 0.01
Matches are distributed among these distances:
96 68 0.88
97 9 0.12
ACGTcount: A:0.32, C:0.23, G:0.14, T:0.30
Consensus pattern (97 bp):
TTTATTTTTACGTAAGAACATATTAAACCTTTTGACCCGAAGAAAGACGACAGCCAAGCAACCCA
CCCAGGTTACTCAGCCCAACACACTCTTAATT
Found at i:94348847 original size:20 final size:19
Alignment explanation
Indices: 94348807--94348859 Score: 70
Period size: 20 Copynumber: 2.7 Consensus size: 19
94348797 ATTAATATCC
* *
94348807 AAATAAAGTAAAAAGTAAT
1 AAATAAAATAAAAAATAAT
94348826 AAATAAAATAATAAAATAAT
1 AAATAAAATAA-AAAATAAT
*
94348846 AAAAAAAATAAAAA
1 AAATAAAATAAAAA
94348860 TTGGGTTGCC
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
19 13 0.43
20 17 0.57
ACGTcount: A:0.77, C:0.00, G:0.04, T:0.19
Consensus pattern (19 bp):
AAATAAAATAAAAAATAAT
Found at i:94351375 original size:8 final size:8
Alignment explanation
Indices: 94351351--94351390 Score: 53
Period size: 8 Copynumber: 4.9 Consensus size: 8
94351341 TATGGATTAA
94351351 ATTGAATG
1 ATTGAATG
*
94351359 TAATGAATG
1 -ATTGAATG
94351368 ATTGAATG
1 ATTGAATG
94351376 ATTGAATG
1 ATTGAATG
*
94351384 GTTGAAT
1 ATTGAAT
94351391 TTGTATTGTA
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
8 21 0.75
9 7 0.25
ACGTcount: A:0.38, C:0.00, G:0.25, T:0.38
Consensus pattern (8 bp):
ATTGAATG
Found at i:94360944 original size:25 final size:25
Alignment explanation
Indices: 94360910--94360963 Score: 108
Period size: 25 Copynumber: 2.2 Consensus size: 25
94360900 TTTATTTGTG
94360910 AGTGGACAAATATGGACAAGCATTA
1 AGTGGACAAATATGGACAAGCATTA
94360935 AGTGGACAAATATGGACAAGCATTA
1 AGTGGACAAATATGGACAAGCATTA
94360960 AGTG
1 AGTG
94360964 ATTTATATGT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 29 1.00
ACGTcount: A:0.43, C:0.11, G:0.26, T:0.20
Consensus pattern (25 bp):
AGTGGACAAATATGGACAAGCATTA
Found at i:94362704 original size:47 final size:47
Alignment explanation
Indices: 94362650--94362746 Score: 185
Period size: 47 Copynumber: 2.1 Consensus size: 47
94362640 CATGGTAGCT
*
94362650 AAAGGTTGAAAAATTGAGAATGTTTGTGTTTGTGATTTTAGGCTAAG
1 AAAGGTTGAAAAATTAAGAATGTTTGTGTTTGTGATTTTAGGCTAAG
94362697 AAAGGTTGAAAAATTAAGAATGTTTGTGTTTGTGATTTTAGGCTAAG
1 AAAGGTTGAAAAATTAAGAATGTTTGTGTTTGTGATTTTAGGCTAAG
94362744 AAA
1 AAA
94362747 TGCTTAGTTG
Statistics
Matches: 49, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
47 49 1.00
ACGTcount: A:0.35, C:0.02, G:0.26, T:0.37
Consensus pattern (47 bp):
AAAGGTTGAAAAATTAAGAATGTTTGTGTTTGTGATTTTAGGCTAAG
Found at i:94366988 original size:10 final size:10
Alignment explanation
Indices: 94366973--94367032 Score: 79
Period size: 10 Copynumber: 6.0 Consensus size: 10
94366963 TAATTTTAAG
94366973 ATTTAT-TTT
1 ATTTATCTTT
94366982 CATTTATCTTT
1 -ATTTATCTTT
94366993 ATTTATCTTT
1 ATTTATCTTT
*
94367003 AGTTATCTTT
1 ATTTATCTTT
94367013 ATTTAT-TTGT
1 ATTTATCTT-T
94367023 ATTTATCTTT
1 ATTTATCTTT
94367033 TAGAATTTAA
Statistics
Matches: 45, Mismatches: 2, Indels: 6
0.85 0.04 0.11
Matches are distributed among these distances:
9 2 0.04
10 38 0.84
11 5 0.11
ACGTcount: A:0.20, C:0.08, G:0.03, T:0.68
Consensus pattern (10 bp):
ATTTATCTTT
Found at i:94371968 original size:40 final size:40
Alignment explanation
Indices: 94371913--94372131 Score: 275
Period size: 40 Copynumber: 5.5 Consensus size: 40
94371903 TTCGAATGAT
* *
94371913 ATCCGGGTTAGGTCCCGAAGGCATTTGTGCAAGTTACTAA
1 ATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAA
94371953 ATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAA
1 ATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAA
* * *
94371993 TTCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAA
1 ATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAA
* *
94372032 ATCTGGGTTAAGTCCCAAAGGCATTTGTGCGAGTTACTATA
1 ATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-A
* * * *
94372073 A-CCGGGCTATGTCCCGAAGGCATTTGAGCGAG-TAGCTAT
1 ATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTAA
* *
94372112 ATCC-GGTTAAATTCCGAAGG
1 ATCCGGGTTAAGTCCCGAAGG
94372132 TATGTGATTC
Statistics
Matches: 155, Mismatches: 20, Indels: 9
0.84 0.11 0.05
Matches are distributed among these distances:
39 50 0.32
40 103 0.66
41 2 0.01
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (40 bp):
ATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAA
Found at i:94372057 original size:79 final size:80
Alignment explanation
Indices: 94371915--94372121 Score: 278
Period size: 79 Copynumber: 2.6 Consensus size: 80
94371905 CGAATGATAT
* * * *
94371915 CCGGGTTAGGTCCCGAAGGCATTTGTGCAAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCAAAGGCATTTG
*
94371980 TGCGAGTTACTA-ATT
66 TGCGAGTTACTATA-A
* *
94371995 CCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAATCTGGGTTAAGTCCCAAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCAAAGGCATTTG
94372059 TGCGAGTTACTATAA
66 TGCGAGTTACTATAA
* * *
94372074 CCGGGCTATGTCCCGAAGGCATTTGAGCGAG-TAGCTATATCC-GGTTAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTAAATCCGGGTTAA
94372122 ATTCCGAAGG
Statistics
Matches: 112, Mismatches: 12, Indels: 7
0.85 0.09 0.05
Matches are distributed among these distances:
79 79 0.71
80 33 0.29
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.27
Consensus pattern (80 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCAAAGGCATTTG
TGCGAGTTACTATAA
Found at i:94374115 original size:40 final size:40
Alignment explanation
Indices: 94374071--94374258 Score: 326
Period size: 40 Copynumber: 4.7 Consensus size: 40
94374061 GCTACTTGCT
94374071 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
94374111 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
94374151 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
* * *
94374191 CAAATGCCTTCGGG-CTTAGCCCGG-AATTAGTCACTAGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTA-TAGTAACTCGCA
94374230 CAAATGCCTTCGGGACTTAGCCCGGTTAT
1 CAAATGCCTTCGGGACTTAGCCCGGTTAT
94374259 CATCCGAATA
Statistics
Matches: 141, Mismatches: 4, Indels: 6
0.93 0.03 0.04
Matches are distributed among these distances:
38 1 0.01
39 34 0.24
40 105 0.74
41 1 0.01
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
Found at i:94374257 original size:79 final size:80
Alignment explanation
Indices: 94374038--94374258 Score: 333
Period size: 80 Copynumber: 2.8 Consensus size: 80
94374028 AAACCAAGTA
* * * *
94374038 CCTTCGGAATTTAG-CCGGATATAGCT-ACTTGCTCAAATGCCTTCGGGACTTAGCCCGGTTATA
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTAGCACAAATGCCTTCGGGACTTAGCCCGGTTATA
94374101 GTAACTCGCACAAATG
65 GTAACTCGCACAAATG
* *
94374117 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGTTATAG
94374182 TAACTCGCACAAATG
66 TAACTCGCACAAATG
*
94374197 CCTTCGGG-CTTAGCCCGGA-ATTAGTCACTAGCACAAATGCCTTCGGGACTTAGCCCGGTTAT
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGTTAT
94374259 CATCCGAATA
Statistics
Matches: 131, Mismatches: 8, Indels: 6
0.90 0.06 0.04
Matches are distributed among these distances:
78 1 0.01
79 62 0.47
80 68 0.52
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (80 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGTTATAG
TAACTCGCACAAATG
Found at i:94382042 original size:40 final size:40
Alignment explanation
Indices: 94381959--94382221 Score: 316
Period size: 40 Copynumber: 6.6 Consensus size: 40
94381949 TTGAATGCTG
* * * * * *
94381959 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTATTAAA
* * * * *
94381999 TCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAA
1 TCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTATTAAA
94382039 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
94382079 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* *
94382119 TCCGGGTTAAGTCCCGAAGGCAGTCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* * *
94382159 TCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* * *
94382198 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
94382222 TGAACGAGGA
Statistics
Matches: 199, Mismatches: 21, Indels: 7
0.88 0.09 0.03
Matches are distributed among these distances:
39 35 0.18
40 156 0.78
41 8 0.04
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.27
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
Found at i:94382241 original size:79 final size:80
Alignment explanation
Indices: 94381998--94382256 Score: 238
Period size: 80 Copynumber: 3.3 Consensus size: 80
94381988 AAGTGAATAT
* * * * * * *
94381998 ATCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCAT
1 ATCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCAG
** * *
94382062 TCGTGCGAGTTA-TTAA
65 TCGAACGAG-GAGCTAA
* * *
94382078 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCAGT
1 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCAGT
** ** *
94382143 CGTGCGAGTTGTTAA
66 CGAACGAGGAGCTAA
* * * *
94382158 ATCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATT
1 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCAGT
* *
94382222 TGAACGAGGAGCTAT
66 CGAACGAGGAGCTAA
*
94382237 ATCC-GGTTAAATCCCGAAGG
1 ATCCGGGTTAAGTCCCGAAGG
94382257 TACGTGATTT
Statistics
Matches: 154, Mismatches: 23, Indels: 6
0.84 0.13 0.03
Matches are distributed among these distances:
78 14 0.09
79 47 0.31
80 93 0.60
ACGTcount: A:0.26, C:0.20, G:0.28, T:0.25
Consensus pattern (80 bp):
ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCAGT
CGAACGAGGAGCTAA
Found at i:94389998 original size:40 final size:40
Alignment explanation
Indices: 94389915--94390177 Score: 316
Period size: 40 Copynumber: 6.6 Consensus size: 40
94389905 TTGAATGCTG
* * * * * *
94389915 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTATTAAA
* * * * *
94389955 TCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAA
1 TCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTATTAAA
94389995 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
94390035 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* *
94390075 TCCGGGTTAAGTCCCGAAGGCAGTCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* * *
94390115 TCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* * *
94390154 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
94390178 TGAACGAGGA
Statistics
Matches: 199, Mismatches: 21, Indels: 7
0.88 0.09 0.03
Matches are distributed among these distances:
39 35 0.18
40 156 0.78
41 8 0.04
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.27
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
Found at i:94390197 original size:79 final size:80
Alignment explanation
Indices: 94389954--94390212 Score: 238
Period size: 80 Copynumber: 3.3 Consensus size: 80
94389944 AAGTGAATAT
* * * * * * *
94389954 ATCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCAT
1 ATCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCAG
** * *
94390018 TCGTGCGAGTTA-TTAA
65 TCGAACGAG-GAGCTAA
* * *
94390034 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCAGT
1 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCAGT
** ** *
94390099 CGTGCGAGTTGTTAA
66 CGAACGAGGAGCTAA
* * * *
94390114 ATCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATT
1 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCAGT
* *
94390178 TGAACGAGGAGCTAT
66 CGAACGAGGAGCTAA
*
94390193 ATCC-GGTTAAATCCCGAAGG
1 ATCCGGGTTAAGTCCCGAAGG
94390213 TACGTGATTT
Statistics
Matches: 154, Mismatches: 23, Indels: 6
0.84 0.13 0.03
Matches are distributed among these distances:
78 14 0.09
79 47 0.31
80 93 0.60
ACGTcount: A:0.26, C:0.20, G:0.28, T:0.25
Consensus pattern (80 bp):
ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCAGT
CGAACGAGGAGCTAA
Found at i:94393274 original size:39 final size:39
Alignment explanation
Indices: 94393230--94393430 Score: 259
Period size: 39 Copynumber: 5.2 Consensus size: 39
94393220 CCTTCAGAAT
* *
94393230 TTAGCCGGATATAGCT-ACTTGCTCAAATGCCTTCGGGAC
1 TTAGCCGGATATAG-TAACTCGCACAAATGCCTTCGGGAC
*
94393269 TTAGCCGGTTATAGTAACT-GCACAAATGCCTTCGGGAC
1 TTAGCCGGATATAGTAACTCGCACAAATGCCTTCGGGAC
*
94393307 TTAGCCCGGTTATAGTAACTCGCACAAATGCCTTC-GGAC
1 TTAG-CCGGATATAGTAACTCGCACAAATGCCTTCGGGAC
*
94393346 TTAGCCCGATTATAGTAACTCGCACAAATGCCTTCGGG-C
1 TTAGCCGGA-TATAGTAACTCGCACAAATGCCTTCGGGAC
* *
94393385 TTAGCCCGGA-ATTAGTCACTAGCACAAATGCCTTCGGGAC
1 TTAG-CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGAC
94393425 TTAGCC
1 TTAGCC
94393431 CGGTTATCAT
Statistics
Matches: 147, Mismatches: 7, Indels: 16
0.86 0.04 0.09
Matches are distributed among these distances:
38 27 0.18
39 95 0.65
40 25 0.17
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (39 bp):
TTAGCCGGATATAGTAACTCGCACAAATGCCTTCGGGAC
Found at i:94393359 original size:78 final size:79
Alignment explanation
Indices: 94393253--94393437 Score: 288
Period size: 78 Copynumber: 2.4 Consensus size: 79
94393243 GCTACTTGCT
94393253 CAAATGCCTTCGGGACTTAG-CCGGTTATAGTAACT-GCACAAATGCCTTCGGGACTTAGCCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGG-CTTAGCCCGG
* *
94393316 -TTATAGTAACTCGCA
65 AAT-TAGTAACTAGCA
*
94393331 CAAATGCCTTC-GGACTTAGCCCGATTATAGTAACTCGCACAAATGCCTTCGGGCTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGCTTAGCCCGGA
*
94393395 ATTAGTCACTAGCA
66 ATTAGTAACTAGCA
94393409 CAAATGCCTTCGGGACTTAGCCCGGTTAT
1 CAAATGCCTTCGGGACTTAGCCCGGTTAT
94393438 CATCCGAATA
Statistics
Matches: 98, Mismatches: 5, Indels: 7
0.89 0.05 0.06
Matches are distributed among these distances:
77 8 0.08
78 56 0.57
79 34 0.35
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.25
Consensus pattern (79 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGCTTAGCCCGGA
ATTAGTAACTAGCA
Found at i:94396893 original size:20 final size:20
Alignment explanation
Indices: 94396864--94396908 Score: 63
Period size: 20 Copynumber: 2.2 Consensus size: 20
94396854 AGCACATGTA
* *
94396864 TTCATAAAATTTTAGAATTT
1 TTCATAAAATTTTACAACTT
*
94396884 TTCATCAAATTTTACAACTT
1 TTCATAAAATTTTACAACTT
94396904 TTCAT
1 TTCAT
94396909 TTTCGTCCCT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.36, C:0.13, G:0.02, T:0.49
Consensus pattern (20 bp):
TTCATAAAATTTTACAACTT
Found at i:94398582 original size:16 final size:16
Alignment explanation
Indices: 94398563--94398601 Score: 53
Period size: 16 Copynumber: 2.4 Consensus size: 16
94398553 ATAATAATAT
94398563 AATAAAC-ATAAAACAA
1 AATAAACAATAAAAC-A
94398579 AATAAACAAATAAAACA
1 AATAAAC-AATAAAACA
94398596 AATAAA
1 AATAAA
94398602 ACAAAAAGAA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
16 7 0.33
17 7 0.33
18 7 0.33
ACGTcount: A:0.77, C:0.10, G:0.00, T:0.13
Consensus pattern (16 bp):
AATAAACAATAAAACA
Found at i:94398593 original size:18 final size:18
Alignment explanation
Indices: 94398570--94398606 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
94398560 TATAATAAAC
94398570 ATAAAACAAA-ATAAACAA
1 ATAAAACAAATA-AAACAA
94398588 ATAAAACAAATAAAACAA
1 ATAAAACAAATAAAACAA
94398606 A
1 A
94398607 AAGAAAAAGA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
18 17 0.94
19 1 0.06
ACGTcount: A:0.78, C:0.11, G:0.00, T:0.11
Consensus pattern (18 bp):
ATAAAACAAATAAAACAA
Found at i:94402818 original size:47 final size:47
Alignment explanation
Indices: 94402739--94403576 Score: 1334
Period size: 47 Copynumber: 17.6 Consensus size: 47
94402729 TATTTGAATA
94402739 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
94402788 AATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
94402835 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG
94402884 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
94402933 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
94402980 AATGTTAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG
* * *
94403029 AATGTGAAAGTATATATATGTGATGAGGCCTAATGGCTGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* * *
94403076 AATGTGAAAATGTACATATGTGATAAGGCCTAATAGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
94403123 AATGTGAAAATGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
94403170 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
94403217 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
94403266 AATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
94403313 AATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
94403360 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG
* * *
94403409 AATGTGAAAATGTACATATGTGATAAGGCCTAATAGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
94403456 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* * * * * *
94403503 AATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
94403550 GATGTGAAAGTGTATAAATGTGATAAG
1 AATGTGAAAGTGTATATATGTGATAAG
94403577 TCCCGAAGGG
Statistics
Matches: 739, Mismatches: 42, Indels: 18
0.92 0.05 0.02
Matches are distributed among these distances:
47 499 0.68
49 240 0.32
ACGTcount: A:0.34, C:0.08, G:0.29, T:0.29
Consensus pattern (47 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
Found at i:94402851 original size:96 final size:94
Alignment explanation
Indices: 94402739--94403576 Score: 1334
Period size: 96 Copynumber: 8.8 Consensus size: 94
94402729 TATTTGAATA
94402739 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
*
94402804 TATGTGATAAGGCCTAATAGCCGATGTGATG
64 TATGTGATAAGGCCTAATGGCCGATGTGATG
94402835 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TA
94402900 TATATGTGATAAGGCCTAATGGCCGATGTGATG
62 TATATGTGATAAGGCCTAATGGCCGATGTGATG
* * *
94402933 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTTAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATA
94402998 TATGTGATAAGGCCTAATGGCCGATGTGATG
64 TATGTGATAAGGCCTAATGGCCGATGTGATG
* * * * *
94403029 AATGTGAAAGTATATATATGTGATGAGGCCTAATGGCTGATGTGATGAATGTGAAAATGTACATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
*
94403094 TGTGATAAGGCCTAATAGCCGATGTGATG
66 TGTGATAAGGCCTAATGGCCGATGTGATG
*
94403123 AATGTGAAAATGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
* *
94403188 TGTGATAAGGCCGAATGGCCAATGTGATG
66 TGTGATAAGGCCTAATGGCCGATGTGATG
94403217 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
*
94403282 TATGTGATAAGGCCTAATAGCCGATGTGATG
64 TATGTGATAAGGCCTAATGGCCGATGTGATG
*
94403313 AATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATA
94403378 TATGTGATAAGGCCTAATGGCCGATGTGATG
64 TATGTGATAAGGCCTAATGGCCGATGTGATG
* * *
94403409 AATGTGAAAATGTACATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
94403474 TGTGATAAGGCCTAATGGCCGATGTGATG
66 TGTGATAAGGCCTAATGGCCGATGTGATG
* * * * * * * *
94403503 AATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATAAA
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
94403568 TGTGATAAG
66 TGTGATAAG
94403577 TCCCGAAGGG
Statistics
Matches: 695, Mismatches: 41, Indels: 14
0.93 0.05 0.02
Matches are distributed among these distances:
94 273 0.39
96 376 0.54
98 46 0.07
ACGTcount: A:0.34, C:0.08, G:0.29, T:0.29
Consensus pattern (94 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
TGTGATAAGGCCTAATGGCCGATGTGATG
Found at i:94403119 original size:143 final size:141
Alignment explanation
Indices: 94402739--94403576 Score: 1316
Period size: 143 Copynumber: 5.9 Consensus size: 141
94402729 TATTTGAATA
94402739 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
1 AATGTGAAA--GTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
*
94402804 TATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTA
64 TATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTA
94402869 ATGGCCGATGTGATG
127 ATGGCCGATGTGATG
94402884 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
1 AATGTGAAA--GTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
* * *
94402949 TATGTGATAAGGCCGAATGGCCAATGTGATGAATGTTAAAGTGTATATATATGTGATAAGGCCTA
64 TATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTA
94403014 ATGGCCGATGTGATG
127 ATGGCCGATGTGATG
* * * *
94403029 AATGTGAAAGTATATATATGTGATGAGGCCTAATGGCTGATGTGATGAATGTGAAAATGTACATA
1 AATGTGAAAGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
* *
94403094 TGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAATGTATATATGTGATAAGGCCTAATGG
66 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGG
94403159 CCGATGTGATG
131 CCGATGTGATG
* * *
94403170 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATA
94403235 TATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAAT
64 TATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAAT
*
94403300 AGCCGATGTGATG
129 GGCCGATGTGATG
* *
94403313 AATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATA
* *
94403378 TATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTACATATGTGATAAGGCCTAAT
64 TATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAAT
*
94403443 AGCCGATGTGATG
129 GGCCGATGTGATG
*
94403456 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
* * * * * * * *
94403521 TGTGACAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATAAATGTGATAAG
66 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAG
94403577 TCCCGAAGGG
Statistics
Matches: 652, Mismatches: 39, Indels: 8
0.93 0.06 0.01
Matches are distributed among these distances:
141 140 0.21
143 362 0.56
145 150 0.23
ACGTcount: A:0.34, C:0.08, G:0.29, T:0.29
Consensus pattern (141 bp):
AATGTGAAAGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGG
CCGATGTGATG
Found at i:94403833 original size:37 final size:37
Alignment explanation
Indices: 94403695--94403832 Score: 249
Period size: 37 Copynumber: 3.7 Consensus size: 37
94403685 CCGAGCTCTA
94403695 AAGACCCGATGACTACGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATGACTACGTGTGGAGATTATGTCCGGGT
94403732 AAGACCCGATGACTACGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATGACTACGTGTGGAGATTATGTCCGGGT
*
94403769 AAGACCCGATGACTACGTGTGGAGATTTTGTCCGGGT
1 AAGACCCGATGACTACGTGTGGAGATTATGTCCGGGT
* *
94403806 AAGACCCGATAACTTCGTGTGGAGATT
1 AAGACCCGATGACTACGTGTGGAGATT
94403833 TCATCTGAGC
Statistics
Matches: 98, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 98 1.00
ACGTcount: A:0.25, C:0.19, G:0.31, T:0.25
Consensus pattern (37 bp):
AAGACCCGATGACTACGTGTGGAGATTATGTCCGGGT
Found at i:94405430 original size:19 final size:20
Alignment explanation
Indices: 94405401--94405439 Score: 62
Period size: 19 Copynumber: 2.0 Consensus size: 20
94405391 AAAGGGACAT
94405401 TATGATTAAATTATGATGTG
1 TATGATTAAATTATGATGTG
*
94405421 TATG-TTAAATTATTATGTG
1 TATGATTAAATTATGATGTG
94405440 ATTGTTCGTA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 14 0.78
20 4 0.22
ACGTcount: A:0.33, C:0.00, G:0.18, T:0.49
Consensus pattern (20 bp):
TATGATTAAATTATGATGTG
Found at i:94413718 original size:19 final size:20
Alignment explanation
Indices: 94413681--94413719 Score: 53
Period size: 19 Copynumber: 2.0 Consensus size: 20
94413671 AAGTTAATAA
*
94413681 AAATTTTGATTAAGGTGGAT
1 AAATTTTGATTAAGATGGAT
*
94413701 AAATTTT-ATTACGATGGAT
1 AAATTTTGATTAAGATGGAT
94413720 GACAGTGGTT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
19 10 0.59
20 7 0.41
ACGTcount: A:0.36, C:0.03, G:0.21, T:0.41
Consensus pattern (20 bp):
AAATTTTGATTAAGATGGAT
Found at i:94420920 original size:49 final size:48
Alignment explanation
Indices: 94420865--94421084 Score: 175
Period size: 49 Copynumber: 4.6 Consensus size: 48
94420855 ACATCTAAGT
* *
94420865 TGATGCCATGTCCTAGACAGGTCTTAAACTGACTTCCATATATCGAGGC
1 TGATGCCATGTCCCAGACAGGTCTTACACTGAC-TCCATATATCGAGGC
* * *
94420914 TGATGCCATGTCCCAGATAGGTCTTACACTGGCTCTCATCTATCG-GTG-
1 TGATGCCATGTCCCAGACAGGTCTTACACTGACTC-CATATATCGAG-GC
** * * * *
94420962 TCGATGCCATGTCTTAGACAAGTCTTACACTGA---CACATGTC-AAGC
1 T-GATGCCATGTCCCAGACAGGTCTTACACTGACTCCATATATCGAGGC
* * * * *
94421007 CGATGCCATGTCCCAGACAGGTCTTACACTGGCTTGCGTATCTCGAGGC
1 TGATGCCATGTCCCAGACAGGTCTTACACTGAC-TCCATATATCGAGGC
* * *
94421056 CGATG-TATGTCCCAGACATGTCTTACACT
1 TGATGCCATGTCCCAGACAGGTCTTACACT
94421085 AGCTTTCGTC
Statistics
Matches: 136, Mismatches: 25, Indels: 21
0.75 0.14 0.12
Matches are distributed among these distances:
44 28 0.21
45 5 0.04
48 31 0.23
49 72 0.53
ACGTcount: A:0.23, C:0.27, G:0.21, T:0.28
Consensus pattern (48 bp):
TGATGCCATGTCCCAGACAGGTCTTACACTGACTCCATATATCGAGGC
Found at i:94420980 original size:98 final size:91
Alignment explanation
Indices: 94420816--94421040 Score: 234
Period size: 93 Copynumber: 2.4 Consensus size: 91
94420806 GGGTACGATA
* * * * *
94420816 CCGATCCCATGTTCCAAATATGGTCTTACACTGGCTCACACATCTAAGTTGATGCCATGTCCTAG
1 CCGATGCCATGTCCCAGATA-GGTCTTACACTGGCTCACACATCGAAGTCGATGCCATGTCCTAG
* * *
94420881 ACAGGTCTTAAACTGACTTCCATATATCGAGG
65 ACAAGTCTTAAACTGA----CACATATC-AAG
* * ** *
94420913 CTGATGCCATGTCCCAGATAGGTCTTACACTGGCTCTCATCTATCGGTGTCGATGCCATGTCTTA
1 CCGATGCCATGTCCCAGATAGGTCTTACACTGGCTCACA-C-ATCGAAGTCGATGCCATGTCCTA
* *
94420978 GACAAGTCTTACACTGACACATGTCAAG
64 GACAAGTCTTAAACTGACACATATCAAG
*
94421006 CCGATGCCATGTCCCAGACAGGTCTTACACTGGCT
1 CCGATGCCATGTCCCAGATAGGTCTTACACTGGCT
94421041 TGCGTATCTC
Statistics
Matches: 109, Mismatches: 17, Indels: 8
0.81 0.13 0.06
Matches are distributed among these distances:
93 35 0.32
94 6 0.06
96 18 0.17
97 17 0.16
98 33 0.30
ACGTcount: A:0.24, C:0.28, G:0.20, T:0.28
Consensus pattern (91 bp):
CCGATGCCATGTCCCAGATAGGTCTTACACTGGCTCACACATCGAAGTCGATGCCATGTCCTAGA
CAAGTCTTAAACTGACACATATCAAG
Found at i:94421121 original size:46 final size:46
Alignment explanation
Indices: 94421001--94421179 Score: 252
Period size: 46 Copynumber: 3.8 Consensus size: 46
94420991 CTGACACATG
* * *
94421001 TCAA-GCCGATGCCATGTCCCAGACAGGTCTTACACTGGCTTGCGTATC
1 TCAATGCCGATG-CATGTCCCAGACATGTCTTACACTAGCTTTCG--TC
* * *
94421049 TCGAGGCCGATGTATGTCCCAGACATGTCTTACACTAGCTTTCGTC
1 TCAATGCCGATGCATGTCCCAGACATGTCTTACACTAGCTTTCGTC
* *
94421095 TCAATGCCGATGCATGTCCTAGACATGTCTTACACTGGCTTTCGTC
1 TCAATGCCGATGCATGTCCCAGACATGTCTTACACTAGCTTTCGTC
94421141 TCAATGCCGATGCATGTCCCAGACATGTCTTACACTAGC
1 TCAATGCCGATGCATGTCCCAGACATGTCTTACACTAGC
94421180 ACACATCTCA
Statistics
Matches: 118, Mismatches: 12, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
46 80 0.68
48 31 0.26
49 7 0.06
ACGTcount: A:0.21, C:0.30, G:0.21, T:0.28
Consensus pattern (46 bp):
TCAATGCCGATGCATGTCCCAGACATGTCTTACACTAGCTTTCGTC
Found at i:94421189 original size:46 final size:46
Alignment explanation
Indices: 94420963--94421189 Score: 199
Period size: 46 Copynumber: 4.9 Consensus size: 46
94420953 CTATCGGTGT
** * *
94420963 CGATGCCATGTCTTAGACAAGTCTTACACT-G-ACACATGTCAA-GC
1 CGATG-CATGTCCCAGACATGTCTTACACTAGCACACATCTCAATGC
* * * ** * *
94421007 CGATGCCATGTCCCAGACAGGTCTTACACTGGCTTGCGTATCTCGAGGC
1 CGATG-CATGTCCCAGACATGTCTTACACTAGC--ACACATCTCAATGC
* *** *
94421056 CGATGTATGTCCCAGACATGTCTTACACTAGCTTTCGTCTCAATGC
1 CGATGCATGTCCCAGACATGTCTTACACTAGCACACATCTCAATGC
* * *** *
94421102 CGATGCATGTCCTAGACATGTCTTACACTGGCTTTCGTCTCAATGC
1 CGATGCATGTCCCAGACATGTCTTACACTAGCACACATCTCAATGC
94421148 CGATGCATGTCCCAGACATGTCTTACACTAGCACACATCTCA
1 CGATGCATGTCCCAGACATGTCTTACACTAGCACACATCTCA
94421190 CCTAAATGTT
Statistics
Matches: 151, Mismatches: 27, Indels: 8
0.81 0.15 0.04
Matches are distributed among these distances:
44 27 0.18
45 1 0.01
46 86 0.57
48 30 0.20
49 7 0.05
ACGTcount: A:0.23, C:0.30, G:0.19, T:0.28
Consensus pattern (46 bp):
CGATGCATGTCCCAGACATGTCTTACACTAGCACACATCTCAATGC
Found at i:94421189 original size:92 final size:93
Alignment explanation
Indices: 94420915--94421189 Score: 285
Period size: 92 Copynumber: 3.0 Consensus size: 93
94420905 TATCGAGGCT
* * * **
94420915 GATGCCATGTCCCAGATAGGTCTTACACTGGCTCT-C-ATCT-ATCGGTGTCGATGCCATGTCTT
1 GATGCCATGTCCCAGACAGGTCTTACACTGGCT-TGCGATCTCA--AG-GCCGATG-CATGTCCC
* *
94420977 AGACAAGTCTTACACT-G-ACACATGTCAAGCC
61 AGACATGTCTTACACTAGCACACATCTCAAGCC
* *
94421008 GATGCCATGTCCCAGACAGGTCTTACACTGGCTTGCGTATCTCGAGGCCGATGTATGTCCCAGAC
1 GATGCCATGTCCCAGACAGGTCTTACACTGGCTTGCG-ATCTCAAGGCCGATGCATGTCCCAGAC
*** *
94421073 ATGTCTTACACTAGCTTTCGTCTCAATGCC
65 ATGTCTTACACTAGCACACATCTCAA-GCC
* * * *
94421103 GATG-CATGTCCTAGACATGTCTTACACTGGCTTTCG-TCTCAATGCCGATGCATGTCCCAGACA
1 GATGCCATGTCCCAGACAGGTCTTACACTGGCTTGCGATCTCAAGGCCGATGCATGTCCCAGACA
94421166 TGTCTTACACTAGCACACATCTCA
66 TGTCTTACACTAGCACACATCTCA
94421190 CCTAAATGTT
Statistics
Matches: 152, Mismatches: 23, Indels: 15
0.80 0.12 0.08
Matches are distributed among these distances:
92 65 0.43
93 40 0.26
94 36 0.24
95 11 0.07
ACGTcount: A:0.23, C:0.29, G:0.20, T:0.28
Consensus pattern (93 bp):
GATGCCATGTCCCAGACAGGTCTTACACTGGCTTGCGATCTCAAGGCCGATGCATGTCCCAGACA
TGTCTTACACTAGCACACATCTCAAGCC
Done.