Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A06
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 115140250
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2234201 characters in sequence are not A, C, G, or T
File 277 of 345
Found at i:94425934 original size:42 final size:42
Alignment explanation
Indices: 94425860--94425977 Score: 130
Period size: 42 Copynumber: 2.8 Consensus size: 42
94425850 TGCCGATACT
* * * * *
94425860 ATGTCCCAGACATGGTCTTATAC-AGGACCTCATATCGATGCC
1 ATGTCCCAGACATGGTCTTACACGA-AATCTCATATCAACGCC
*
94425902 ATGTCTCAGACATGGTCTTACACGAAATCTCATATCAACGCC
1 ATGTCCCAGACATGGTCTTACACGAAATCTCATATCAACGCC
* * * *
94425944 ATATCCCAGATATGGTCTTACATGAAATCACATA
1 ATGTCCCAGACATGGTCTTACACGAAATCTCATA
94425978 CCGAGGTCGA
Statistics
Matches: 64, Mismatches: 11, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
42 63 0.98
43 1 0.02
ACGTcount: A:0.31, C:0.26, G:0.15, T:0.27
Consensus pattern (42 bp):
ATGTCCCAGACATGGTCTTACACGAAATCTCATATCAACGCC
Found at i:94428418 original size:20 final size:20
Alignment explanation
Indices: 94428393--94428434 Score: 57
Period size: 20 Copynumber: 2.1 Consensus size: 20
94428383 TTAATCACTT
*
94428393 TAATATTAAATTTAATCTAA
1 TAATATTAAATTAAATCTAA
* *
94428413 TAATATTAGATTAAATTTAA
1 TAATATTAAATTAAATCTAA
94428433 TA
1 TA
94428435 TTAAATCTTA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.50, C:0.02, G:0.02, T:0.45
Consensus pattern (20 bp):
TAATATTAAATTAAATCTAA
Found at i:94429015 original size:9 final size:9
Alignment explanation
Indices: 94428995--94429025 Score: 53
Period size: 9 Copynumber: 3.3 Consensus size: 9
94428985 AAAATATTAT
94428995 ATTAATTTTA
1 ATTAA-TTTA
94429005 ATTAATTTA
1 ATTAATTTA
94429014 ATTAATTTA
1 ATTAATTTA
94429023 ATT
1 ATT
94429026 TTACTTGATT
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
9 16 0.76
10 5 0.24
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (9 bp):
ATTAATTTA
Found at i:94430215 original size:16 final size:16
Alignment explanation
Indices: 94430194--94430224 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
94430184 TTATGCATGC
*
94430194 AAAATATAAAAGACAG
1 AAAATACAAAAGACAG
94430210 AAAATACAAAAGACA
1 AAAATACAAAAGACA
94430225 TAATAGTAAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.71, C:0.10, G:0.10, T:0.10
Consensus pattern (16 bp):
AAAATACAAAAGACAG
Found at i:94434355 original size:43 final size:42
Alignment explanation
Indices: 94434307--94434474 Score: 169
Period size: 43 Copynumber: 4.0 Consensus size: 42
94434297 AGGATTTTCA
* *
94434307 ATATGTGTTCTCATGTAAGACCATGTCTGGGATGTTGGCATCG
1 ATATGTGAT-TCATGTAAGACCATGTCTGGGACGTTGGCATCG
* * *
94434350 ATATGTGATTACGTGTAACACCATGTCTGGGACATTGGCATCG
1 ATATGTGATT-CATGTAAGACCATGTCTGGGACGTTGGCATCG
* * * * *
94434393 -TATTTGATTCGTGTAAGACCCTGTCTGAGATAG-TGGCATCG
1 ATATGTGATTCATGTAAGACCATGTCTGGGA-CGTTGGCATCG
* * *
94434434 TTATGTGATGGCATGTAAGACCATGTCTGGGACGTTAGCAT
1 ATATGTGAT-TCATGTAAGACCATGTCTGGGACGTTGGCAT
94434475 TGTACAATAT
Statistics
Matches: 102, Mismatches: 18, Indels: 10
0.78 0.14 0.08
Matches are distributed among these distances:
41 26 0.25
42 17 0.17
43 59 0.58
ACGTcount: A:0.23, C:0.17, G:0.27, T:0.33
Consensus pattern (42 bp):
ATATGTGATTCATGTAAGACCATGTCTGGGACGTTGGCATCG
Found at i:94434418 original size:41 final size:42
Alignment explanation
Indices: 94434320--94434466 Score: 170
Period size: 43 Copynumber: 3.5 Consensus size: 42
94434310 TGTGTTCTCA
**
94434320 TGTAAGACCATGTCTGGGATGTTGGCATCGATATGTGATTACG
1 TGTAAGACCATGTCTGGGACATTGGCATCGATATGTGATT-CG
* *
94434363 TGTAACACCATGTCTGGGACATTGGCATCG-TATTTGATTCG
1 TGTAAGACCATGTCTGGGACATTGGCATCGATATGTGATTCG
* * * * * * *
94434404 TGTAAGACCCTGTCTGAGATAGTGGCATCGTTATGTGATGGCA
1 TGTAAGACCATGTCTGGGACATTGGCATCGATATGTGAT-TCG
94434447 TGTAAGACCATGTCTGGGAC
1 TGTAAGACCATGTCTGGGAC
94434467 GTTAGCATTG
Statistics
Matches: 87, Mismatches: 15, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
41 27 0.31
42 15 0.17
43 45 0.52
ACGTcount: A:0.23, C:0.17, G:0.29, T:0.31
Consensus pattern (42 bp):
TGTAAGACCATGTCTGGGACATTGGCATCGATATGTGATTCG
Found at i:94439340 original size:20 final size:19
Alignment explanation
Indices: 94439314--94439365 Score: 77
Period size: 20 Copynumber: 2.6 Consensus size: 19
94439304 TTGGAGCAGG
*
94439314 AATATCGATACCTTAGGAA
1 AATATCGATACCTTAAGAA
94439333 ATATATCGATACCTTAAGAA
1 A-ATATCGATACCTTAAGAA
94439353 AAGTATCGATACC
1 AA-TATCGATACC
94439366 AGATTGATAC
Statistics
Matches: 30, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
19 2 0.07
20 28 0.93
ACGTcount: A:0.42, C:0.17, G:0.13, T:0.27
Consensus pattern (19 bp):
AATATCGATACCTTAAGAA
Found at i:94441185 original size:18 final size:17
Alignment explanation
Indices: 94441162--94441200 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 17
94441152 GGTCCAGAAT
94441162 CCCACACACCCGTGTGGG
1 CCCACACACCCGTGT-GG
**
94441180 CCCACATGCCCGTGTGG
1 CCCACACACCCGTGTGG
94441197 CCCA
1 CCCA
94441201 TACGACCCAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
17 6 0.32
18 13 0.68
ACGTcount: A:0.15, C:0.46, G:0.26, T:0.13
Consensus pattern (17 bp):
CCCACACACCCGTGTGG
Found at i:94444238 original size:20 final size:20
Alignment explanation
Indices: 94444213--94444268 Score: 69
Period size: 20 Copynumber: 2.8 Consensus size: 20
94444203 TTTTAAATTT
*
94444213 TAAAAATTCAAAATAATATA
1 TAAAAATTTAAAATAATATA
* *
94444233 TAAAAATTTAAAAT-TTTTA
1 TAAAAATTTAAAATAATATA
94444252 TAAAAAATTTAAAATAA
1 T-AAAAATTTAAAATAA
94444269 AAGTAATTAA
Statistics
Matches: 30, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
19 4 0.13
20 26 0.87
ACGTcount: A:0.62, C:0.02, G:0.00, T:0.36
Consensus pattern (20 bp):
TAAAAATTTAAAATAATATA
Found at i:94446321 original size:25 final size:25
Alignment explanation
Indices: 94446287--94446337 Score: 93
Period size: 25 Copynumber: 2.0 Consensus size: 25
94446277 CCTTTTGATT
94446287 TTGGGTTAAAATGGAAAAAAAAGAA
1 TTGGGTTAAAATGGAAAAAAAAGAA
*
94446312 TTGGGTTAAAATGGAAATAAAAGAA
1 TTGGGTTAAAATGGAAAAAAAAGAA
94446337 T
1 T
94446338 AATATCTATT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.53, C:0.00, G:0.24, T:0.24
Consensus pattern (25 bp):
TTGGGTTAAAATGGAAAAAAAAGAA
Found at i:94453803 original size:83 final size:83
Alignment explanation
Indices: 94453695--94453867 Score: 301
Period size: 83 Copynumber: 2.1 Consensus size: 83
94453685 TAAGGCATTC
* *
94453695 GACAATGGGTACTATTGTTGATCTATACGATTGAATGTGTTTGTTATAACTCATCGATGGTGGTG
1 GACAATGGGTACTATTGTTGATCTATACGATTGAATATGTTTGTTATAACTCATCGATGGTGATG
94453760 ATGATGAATATTGGTAAA
66 ATGATGAATATTGGTAAA
* *
94453778 GACAATGGGTATTATTGTTGATCTATACGATTGAGTATGTTTGTTATAACTCATCGATGGTGATG
1 GACAATGGGTACTATTGTTGATCTATACGATTGAATATGTTTGTTATAACTCATCGATGGTGATG
94453843 ATGATGAATATTGGTAAA
66 ATGATGAATATTGGTAAA
*
94453861 GAGAATG
1 GACAATG
94453868 ACAGGAGAGA
Statistics
Matches: 85, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
83 85 1.00
ACGTcount: A:0.30, C:0.08, G:0.25, T:0.37
Consensus pattern (83 bp):
GACAATGGGTACTATTGTTGATCTATACGATTGAATATGTTTGTTATAACTCATCGATGGTGATG
ATGATGAATATTGGTAAA
Found at i:94455758 original size:93 final size:93
Alignment explanation
Indices: 94455599--94455770 Score: 290
Period size: 93 Copynumber: 1.8 Consensus size: 93
94455589 GCCCATAAGT
* * *
94455599 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATGAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
94455664 CGAGTTTGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
* *
94455692 GAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
94455757 CGAGTTCGGATGCC
66 CGAGTTCGGATGCC
94455771 CAAATATCCC
Statistics
Matches: 73, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:94455766 original size:46 final size:46
Alignment explanation
Indices: 94455591--94455766 Score: 205
Period size: 46 Copynumber: 3.8 Consensus size: 46
94455581 TGTAACCCGC
* * * *
94455591 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCAT
* * * *
94455637 CCATGAGTGAACTCGGACTCAACTCAACGAGTTTGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-ATTTGCAT
* *
94455687 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCAT
94455730 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
94455767 TGCCCAAATA
Statistics
Matches: 108, Mismatches: 15, Indels: 14
0.79 0.11 0.10
Matches are distributed among these distances:
43 6 0.06
44 2 0.02
45 2 0.02
46 62 0.57
47 28 0.26
48 2 0.02
49 2 0.02
50 4 0.04
ACGTcount: A:0.28, C:0.28, G:0.22, T:0.22
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCAT
Found at i:94461133 original size:37 final size:37
Alignment explanation
Indices: 94461074--94461182 Score: 191
Period size: 37 Copynumber: 2.9 Consensus size: 37
94461064 AGCTCAGACG
* *
94461074 AAATCTCCACACGAAGTTATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
94461111 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
94461148 TAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
94461183 ATATATTTCC
Statistics
Matches: 69, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
37 69 1.00
ACGTcount: A:0.27, C:0.31, G:0.19, T:0.23
Consensus pattern (37 bp):
AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
Found at i:94461383 original size:48 final size:48
Alignment explanation
Indices: 94461329--94461463 Score: 243
Period size: 48 Copynumber: 2.8 Consensus size: 48
94461319 GCACATCGCC
94461329 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCA
1 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCA
* *
94461377 TACATATTTCACACTAGCCATTCGGCTTTACCACATATGCATGTCTCA
1 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCA
*
94461425 TACATATTTCACATTAGCCATTCGGCTTTACCACATATA
1 TACATATTTCACACTAGCCATTCGGCTTTACCACATATA
94461464 TGCATGTTCA
Statistics
Matches: 83, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
48 83 1.00
ACGTcount: A:0.30, C:0.28, G:0.08, T:0.34
Consensus pattern (48 bp):
TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCA
Found at i:94461505 original size:22 final size:22
Alignment explanation
Indices: 94461479--94461554 Score: 59
Period size: 22 Copynumber: 3.3 Consensus size: 22
94461469 GTTCATATTC
94461479 ATCACATTGGCCATTCGGCCTT
1 ATCACATTGGCCATTCGGCCTT
* *
94461501 ATCACACATAT-G-CATGCTC-ACATT
1 AT--CACAT-TGGCCAT--TCGGCCTT
94461525 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
94461548 ATCACAT
1 ATCACAT
94461555 ACATGCATGT
Statistics
Matches: 41, Mismatches: 4, Indels: 18
0.65 0.06 0.29
Matches are distributed among these distances:
22 12 0.29
23 12 0.29
24 12 0.29
25 5 0.12
ACGTcount: A:0.25, C:0.32, G:0.13, T:0.30
Consensus pattern (22 bp):
ATCACATTGGCCATTCGGCCTT
Found at i:94461512 original size:47 final size:47
Alignment explanation
Indices: 94461433--94461626 Score: 298
Period size: 47 Copynumber: 4.1 Consensus size: 47
94461423 CATACATATT
* * * *
94461433 TCACATTAGCCATTCGGCTTTACCACATATATGCATGTTCATATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
* *
94461480 TCACATTGGCCATTCGGCCTTATCACACATATGCATGCTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
*
94461527 TCACATTGGCCATTCGGCCTTATCACATACATGCATGTTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
* **
94461574 TCACATTGGCCATTCGGCCTTATCTCATATATGCACATTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
94461621 TCACAT
1 TCACAT
94461627 AAAATCCTAA
Statistics
Matches: 134, Mismatches: 13, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
47 134 1.00
ACGTcount: A:0.26, C:0.29, G:0.11, T:0.33
Consensus pattern (47 bp):
TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
Found at i:94461561 original size:94 final size:93
Alignment explanation
Indices: 94461393--94461626 Score: 301
Period size: 94 Copynumber: 2.5 Consensus size: 93
94461383 TTTCACACTA
* * *
94461393 GCCATTCGGCTTTA-CCACATATGCATGTCTCATACATAT-TTCACATTAGCCATTCGGCTTTAC
1 GCCATTCGGCCTTATCCACATATGCATG-CTC--ACAT-TCATCACATTAGCCATTCGGCCTTAC
* *
94461456 CACATATATGCATGTTCATATTCATCACATTG
62 CACATACATGCATGTTCACATTCATCACATTG
* *
94461488 GCCATTCGGCCTTATCACACATATGCATGCTCACATTCATCACATTGGCCATTCGGCCTTATCAC
1 GCCATTCGGCCTTATC-CACATATGCATGCTCACATTCATCACATTAGCCATTCGGCCTTACCAC
94461553 ATACATGCATGTTCACATTCATCACATTG
65 ATACATGCATGTTCACATTCATCACATTG
* ***
94461582 GCCATTCGGCCTTATCTCATATATGCACATTCACATTCATCACAT
1 GCCATTCGGCCTTATC-CACATATGCATGCTCACATTCATCACAT
94461627 AAAATCCTAA
Statistics
Matches: 124, Mismatches: 12, Indels: 7
0.87 0.08 0.05
Matches are distributed among these distances:
93 1 0.01
94 94 0.76
95 13 0.10
96 4 0.03
97 12 0.10
ACGTcount: A:0.26, C:0.29, G:0.12, T:0.33
Consensus pattern (93 bp):
GCCATTCGGCCTTATCCACATATGCATGCTCACATTCATCACATTAGCCATTCGGCCTTACCACA
TACATGCATGTTCACATTCATCACATTG
Found at i:94461627 original size:25 final size:25
Alignment explanation
Indices: 94461548--94461627 Score: 60
Period size: 25 Copynumber: 3.3 Consensus size: 25
94461538 ATTCGGCCTT
* **
94461548 ATCACATACATGCATGTTCACATTC
1 ATCACATATATGCACATTCACATTC
* * *
94461573 ATCACAT-T-GGC-CATTCGGCCTT-
1 ATCACATATATGCACATTC-ACATTC
*
94461595 ATCTCATATATGCACATTCACATTC
1 ATCACATATATGCACATTCACATTC
94461620 ATCACATA
1 ATCACATA
94461628 AAATCCTAAA
Statistics
Matches: 39, Mismatches: 11, Indels: 10
0.65 0.18 0.17
Matches are distributed among these distances:
22 9 0.23
23 6 0.15
24 5 0.13
25 19 0.49
ACGTcount: A:0.30, C:0.29, G:0.09, T:0.33
Consensus pattern (25 bp):
ATCACATATATGCACATTCACATTC
Found at i:94465504 original size:47 final size:47
Alignment explanation
Indices: 94465452--94465545 Score: 188
Period size: 47 Copynumber: 2.0 Consensus size: 47
94465442 TTCTTTTGAT
94465452 AAAATGTAAATAAGTAGATTAGCGATGTAAAAATACAATACAAATGC
1 AAAATGTAAATAAGTAGATTAGCGATGTAAAAATACAATACAAATGC
94465499 AAAATGTAAATAAGTAGATTAGCGATGTAAAAATACAATACAAATGC
1 AAAATGTAAATAAGTAGATTAGCGATGTAAAAATACAATACAAATGC
94465546 TAATGGAAAC
Statistics
Matches: 47, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
47 47 1.00
ACGTcount: A:0.53, C:0.09, G:0.15, T:0.23
Consensus pattern (47 bp):
AAAATGTAAATAAGTAGATTAGCGATGTAAAAATACAATACAAATGC
Found at i:94465717 original size:3 final size:3
Alignment explanation
Indices: 94465709--94465746 Score: 67
Period size: 3 Copynumber: 12.7 Consensus size: 3
94465699 GGGTTTCGGC
*
94465709 TCA TCA TCA TCA TCA TCA TCA TTA TCA TCA TCA TCA TC
1 TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TC
94465747 GCCATCGCCT
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
3 33 1.00
ACGTcount: A:0.32, C:0.32, G:0.00, T:0.37
Consensus pattern (3 bp):
TCA
Found at i:94467678 original size:20 final size:19
Alignment explanation
Indices: 94467654--94467717 Score: 56
Period size: 20 Copynumber: 3.2 Consensus size: 19
94467644 TTATATAAAG
94467654 ATAAAAAATAAAAAATAAT
1 ATAAAAAATAAAAAATAAT
* * * *
94467673 ATTAAAAATTTAATAATGAT
1 A-TAAAAAATAAAAAATAAT
*
94467693 ATAATTAAAATAAAAAATATT
1 ATAA--AAAATAAAAAATAAT
94467714 ATAA
1 ATAA
94467718 TAATCTCTTA
Statistics
Matches: 33, Mismatches: 9, Indels: 4
0.72 0.20 0.09
Matches are distributed among these distances:
19 4 0.12
20 15 0.45
21 14 0.42
ACGTcount: A:0.67, C:0.00, G:0.02, T:0.31
Consensus pattern (19 bp):
ATAAAAAATAAAAAATAAT
Found at i:94473606 original size:21 final size:21
Alignment explanation
Indices: 94473570--94473614 Score: 58
Period size: 21 Copynumber: 2.1 Consensus size: 21
94473560 CTAAACCGAG
94473570 AACTTTAGAAAATTTT-ACAGA
1 AACTTTAGAAAATTTTCACA-A
94473591 AACTTT-GAAAATTTTTCACAA
1 AACTTTAGAAAA-TTTTCACAA
94473612 AAC
1 AAC
94473615 AAGGGTCACA
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
20 5 0.23
21 14 0.64
22 3 0.14
ACGTcount: A:0.47, C:0.13, G:0.07, T:0.33
Consensus pattern (21 bp):
AACTTTAGAAAATTTTCACAA
Found at i:94481253 original size:57 final size:57
Alignment explanation
Indices: 94481165--94481279 Score: 230
Period size: 57 Copynumber: 2.0 Consensus size: 57
94481155 GAGTAATGAA
94481165 ACTTAGTTTATGGTTTGATTAAGTCATGACATACAAGCATAACAAATAAACGGTGAT
1 ACTTAGTTTATGGTTTGATTAAGTCATGACATACAAGCATAACAAATAAACGGTGAT
94481222 ACTTAGTTTATGGTTTGATTAAGTCATGACATACAAGCATAACAAATAAACGGTGAT
1 ACTTAGTTTATGGTTTGATTAAGTCATGACATACAAGCATAACAAATAAACGGTGAT
94481279 A
1 A
94481280 TAATGATTCT
Statistics
Matches: 58, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
57 58 1.00
ACGTcount: A:0.39, C:0.12, G:0.17, T:0.31
Consensus pattern (57 bp):
ACTTAGTTTATGGTTTGATTAAGTCATGACATACAAGCATAACAAATAAACGGTGAT
Found at i:94481570 original size:40 final size:41
Alignment explanation
Indices: 94481510--94481730 Score: 246
Period size: 40 Copynumber: 5.6 Consensus size: 41
94481500 TATTCGAATG
*
94481510 ATATCCGGGCTAAG-TCCCGAAGGCTTTTGTGCTAGTGACT
1 ATATCCGGGCTAAGATCCCGAAGGCATTTGTGCTAGTGACT
*
94481550 ATATCCGGACTAAGAT-CCGAAGGCATTTGTG-TGAGTTG-CT
1 ATATCCGGGCTAAGATCCCGAAGGCATTTGTGCT-AG-TGACT
* * *
94481590 ATATCCAGGCTAAG-GCCCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAGATCCCGAAGGCATTTGTGCTAGTGACT
* * *
94481630 ATATCCGGGTTAAG-TCCCGAAGGCATTTATGCTAGTGATT
1 ATATCCGGGCTAAGATCCCGAAGGCATTTGTGCTAGTGACT
* * *
94481670 ATATCTGGGCTAAGA-CCCGAAGGCATTTGTGCGAGTTG-TT
1 ATATCCGGGCTAAGATCCCGAAGGCATTTGTGCTAG-TGACT
94481710 ATATCC-GGCTAA-ATCCCGAAG
1 ATATCCGGGCTAAGATCCCGAAG
94481731 ATACTTGGGT
Statistics
Matches: 155, Mismatches: 17, Indels: 19
0.81 0.09 0.10
Matches are distributed among these distances:
38 1 0.01
39 15 0.10
40 133 0.86
41 6 0.04
ACGTcount: A:0.24, C:0.21, G:0.27, T:0.28
Consensus pattern (41 bp):
ATATCCGGGCTAAGATCCCGAAGGCATTTGTGCTAGTGACT
Found at i:94481998 original size:22 final size:22
Alignment explanation
Indices: 94481958--94481999 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
94481948 GAATGTGCAT
*
94481958 ATATGAAGTTATTCATTTAGCC
1 ATATGAAGTTATACATTTAGCC
94481980 ATATGAATGTTATAC-TTTAG
1 ATATGAA-GTTATACATTTAG
94482000 TCGAAACTAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
22 12 0.67
23 6 0.33
ACGTcount: A:0.33, C:0.10, G:0.14, T:0.43
Consensus pattern (22 bp):
ATATGAAGTTATACATTTAGCC
Found at i:94514112 original size:38 final size:38
Alignment explanation
Indices: 94514061--94514136 Score: 134
Period size: 38 Copynumber: 2.0 Consensus size: 38
94514051 GGCCGAGGAT
*
94514061 GATATGTAAGTGGTTGTGATTGGTGAGTGTCAAGATTA
1 GATATGGAAGTGGTTGTGATTGGTGAGTGTCAAGATTA
*
94514099 GATATGGAGGTGGTTGTGATTGGTGAGTGTCAAGATTA
1 GATATGGAAGTGGTTGTGATTGGTGAGTGTCAAGATTA
94514137 TCTGTCCAAT
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
38 36 1.00
ACGTcount: A:0.25, C:0.03, G:0.37, T:0.36
Consensus pattern (38 bp):
GATATGGAAGTGGTTGTGATTGGTGAGTGTCAAGATTA
Found at i:94517070 original size:43 final size:43
Alignment explanation
Indices: 94516987--94517071 Score: 100
Period size: 43 Copynumber: 2.0 Consensus size: 43
94516977 ATGTGATTCT
* * * *
94516987 GATATGTGTTTACGGGTAAGACCCTGTCTTGGATAGTGGCATC
1 GATATGTGGTTACAGGTAAGACCCTGTCTGGGACAGTGGCATC
* *
94517030 GATATGTGGTTACATGTAAGACCAC-GTCTGGGACATTGGCAT
1 GATATGTGGTTACAGGTAAGACC-CTGTCTGGGACAGTGGCAT
94517072 TGTACGATTT
Statistics
Matches: 35, Mismatches: 6, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
43 34 0.97
44 1 0.03
ACGTcount: A:0.24, C:0.16, G:0.29, T:0.31
Consensus pattern (43 bp):
GATATGTGGTTACAGGTAAGACCCTGTCTGGGACAGTGGCATC
Found at i:94529925 original size:47 final size:48
Alignment explanation
Indices: 94529852--94530121 Score: 240
Period size: 47 Copynumber: 5.8 Consensus size: 48
94529842 AGGGTAAAGT
* * *
94529852 GCCGATGCCATGTCCTAGACACGGTCTTATACTGGCTCATATCTC-AA
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCATATCTCGAA
* * *
94529899 GTCGATGCCATGTCCCAGACATGGTCTTACACTGACT-ATCATCTCGTA
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCAT-ATCTCGAA
* * * ** *
94529947 GCCTATG-CATGTCCTAGACAT-GTCTTACACTGGCTTACGTCTCGAG
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCATATCTCGAA
* * * *
94529993 GCCGATG-CATGTCCCAGACAT-GTCTTACACTAGCCCTTGTCTC-AA
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCATATCTCGAA
* * *
94530038 TGCCGATGCCATATCCCAGACATGGTCTTACACTAGCTCTCATAATGT-G--
1 -GCCGATGCCATGTCCCAGACATGGTCTTACACT-G-GCTCAT-ATCTCGAA
94530087 GCCGATG-CATGTCCCAGACAT-GTCTTACACTGGCT
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCT
94530122 TACACACGAA
Statistics
Matches: 182, Mismatches: 31, Indels: 23
0.77 0.13 0.10
Matches are distributed among these distances:
44 2 0.01
45 2 0.01
46 73 0.40
47 77 0.42
48 23 0.13
50 3 0.02
51 2 0.01
ACGTcount: A:0.22, C:0.30, G:0.20, T:0.28
Consensus pattern (48 bp):
GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCATATCTCGAA
Found at i:94529990 original size:46 final size:47
Alignment explanation
Indices: 94529852--94530125 Score: 210
Period size: 46 Copynumber: 5.8 Consensus size: 47
94529842 AGGGTAAAGT
* * * * * *
94529852 GCCGATGCCATGTCCTAGACACGGTCTTATACTGGCTCATATCTC--AA
1 GCCGATG-CATGTCCCAGACA-TGTCTTACACTGGCTTACATCTCGTAG
* *
94529899 GTCGATGCCATGTCCCAGACATGGTCTTACACTGAC-TATCATCTCGTA-
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTGGCTTA-CATCTCGTAG
* * *
94529947 GCCTATGCATGTCCTAGACATGTCTTACACTGGCTTACGTCTCG-AG
1 GCCGATGCATGTCCCAGACATGTCTTACACTGGCTTACATCTCGTAG
* * * *
94529993 GCCGATGCATGTCCCAGACATGTCTTACACTAGCCCTT--GTCTC-AAT
1 GCCGATGCATGTCCCAGACATGTCTTACACT-G-GCTTACATCTCGTAG
* * *
94530039 GCCGATGCCATATCCCAGACATGGTCTTACACTAGCTCT-CATAAT-GT-G
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTGGCT-TACAT-CTCGTAG
94530087 GCCGATGCATGTCCCAGACATGTCTTACACTGGCTTACA
1 GCCGATGCATGTCCCAGACATGTCTTACACTGGCTTACA
94530126 CACGAATGAC
Statistics
Matches: 186, Mismatches: 25, Indels: 33
0.76 0.10 0.14
Matches are distributed among these distances:
45 2 0.01
46 78 0.42
47 78 0.42
48 26 0.14
49 2 0.01
ACGTcount: A:0.23, C:0.30, G:0.19, T:0.28
Consensus pattern (47 bp):
GCCGATGCATGTCCCAGACATGTCTTACACTGGCTTACATCTCGTAG
Found at i:94530112 original size:140 final size:141
Alignment explanation
Indices: 94529852--94530124 Score: 365
Period size: 140 Copynumber: 1.9 Consensus size: 141
94529842 AGGGTAAAGT
* * * * * *
94529852 GCCGATGCCATGTCCTAGACACGGTCTTATACTGGCTCATATCTCAAGTCGATGCCATGTCCCAG
1 GCCGATGCCATGTCCCAGACACGGTCTTACACTAGCCCATATCTCAAGCCGATGCCATATCCCAG
* * *
94529917 ACATGGTCTTACACTGACTATCATCTCGTAGCCTATGCATGTCCTAGACATGTCTTACACTGGCT
66 ACATGGTCTTACACTGACTATCATATCGTAGCCGATGCATGTCCCAGACATGTCTTACACTGGCT
94529982 TACGTCTCGAG
131 TACGTCTCGAG
* * *
94529993 GCCGATG-CATGTCCCAGACA-TGTCTTACACTAGCCCTTGTCTCAATGCCGATGCCATATCCCA
1 GCCGATGCCATGTCCCAGACACGGTCTTACACTAGCCCATATCTCAA-GCCGATGCCATATCCCA
* *
94530056 GACATGGTCTTACACT-AGCTCTCATAAT-GTGGCCGATGCATGTCCCAGACATGTCTTACACTG
65 GACATGGTCTTACACTGA-CTATCAT-ATCGTAGCCGATGCATGTCCCAGACATGTCTTACACTG
94530119 GCTTAC
128 GCTTAC
94530125 ACACGAATGA
Statistics
Matches: 115, Mismatches: 14, Indels: 7
0.85 0.10 0.05
Matches are distributed among these distances:
139 20 0.17
140 87 0.76
141 8 0.07
ACGTcount: A:0.22, C:0.30, G:0.19, T:0.28
Consensus pattern (141 bp):
GCCGATGCCATGTCCCAGACACGGTCTTACACTAGCCCATATCTCAAGCCGATGCCATATCCCAG
ACATGGTCTTACACTGACTATCATATCGTAGCCGATGCATGTCCCAGACATGTCTTACACTGGCT
TACGTCTCGAG
Found at i:94537291 original size:19 final size:19
Alignment explanation
Indices: 94537269--94537305 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
94537259 TATGTGCTAG
*
94537269 CCTAAAATTATTAGATAAT
1 CCTAAAATGATTAGATAAT
*
94537288 CCTAAAATGATTATATAA
1 CCTAAAATGATTAGATAA
94537306 AGTGTTAATT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.49, C:0.11, G:0.05, T:0.35
Consensus pattern (19 bp):
CCTAAAATGATTAGATAAT
Found at i:94537927 original size:33 final size:33
Alignment explanation
Indices: 94537879--94537954 Score: 93
Period size: 33 Copynumber: 2.3 Consensus size: 33
94537869 TATATGTATA
* * *
94537879 AGTGTAGGACCATAACT-GGTCTATGGCATTCTG
1 AGTGTAAGACGATAACTAGGT-TATGGCATTATG
94537912 A-TGATAAGACGATAACTAGGTTATGGCATTATG
1 AGTG-TAAGACGATAACTAGGTTATGGCATTATG
94537945 AGTGTAAGAC
1 AGTGTAAGAC
94537955 CATGGCAAGG
Statistics
Matches: 37, Mismatches: 3, Indels: 6
0.80 0.07 0.13
Matches are distributed among these distances:
32 2 0.05
33 30 0.81
34 5 0.14
ACGTcount: A:0.32, C:0.13, G:0.26, T:0.29
Consensus pattern (33 bp):
AGTGTAAGACGATAACTAGGTTATGGCATTATG
Found at i:94545628 original size:26 final size:26
Alignment explanation
Indices: 94545598--94545667 Score: 77
Period size: 29 Copynumber: 2.5 Consensus size: 26
94545588 ATAGATATTT
94545598 AATTATTTATATTTAATAATATAATA
1 AATTATTTATATTTAATAATATAATA
* * *
94545624 AATTATTAATATAATTTATTATTTTAATA
1 AATTATT--TAT-ATTTAATAATATAATA
94545653 AATTATTTAATATTT
1 AATTATTT-ATATTT
94545668 CAATTTTTGT
Statistics
Matches: 37, Mismatches: 3, Indels: 7
0.79 0.06 0.15
Matches are distributed among these distances:
26 7 0.19
27 5 0.14
28 5 0.14
29 20 0.54
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (26 bp):
AATTATTTATATTTAATAATATAATA
Found at i:94545635 original size:16 final size:16
Alignment explanation
Indices: 94545614--94545665 Score: 56
Period size: 16 Copynumber: 3.4 Consensus size: 16
94545604 TTATATTTAA
94545614 TAATATAATAAATTAT
1 TAATATAATAAATTAT
94545630 TAATATAAT---TTAT
1 TAATATAATAAATTAT
* *
94545643 TATTTTAATAAATTATT
1 TAATATAATAAATTA-T
94545660 TAATAT
1 TAATAT
94545666 TTCAATTTTT
Statistics
Matches: 28, Mismatches: 4, Indels: 7
0.72 0.10 0.18
Matches are distributed among these distances:
13 11 0.39
16 12 0.43
17 5 0.18
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (16 bp):
TAATATAATAAATTAT
Found at i:94545641 original size:29 final size:30
Alignment explanation
Indices: 94545608--94545665 Score: 82
Period size: 29 Copynumber: 2.0 Consensus size: 30
94545598 AATTATTTAT
94545608 ATTTAATAATATAATAAATTA-TTAATATA
1 ATTTAATAATATAATAAATTATTTAATATA
* * *
94545637 ATTTATTATTTTAATAAATTATTTAATAT
1 ATTTAATAATATAATAAATTATTTAATAT
94545666 TTCAATTTTT
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
29 18 0.72
30 7 0.28
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (30 bp):
ATTTAATAATATAATAAATTATTTAATATA
Found at i:94545995 original size:10 final size:10
Alignment explanation
Indices: 94545982--94546128 Score: 55
Period size: 10 Copynumber: 15.4 Consensus size: 10
94545972 GACATGTGAA
94545982 AAAAAATTAT
1 AAAAAATTAT
94545992 AAAAAA-TA-
1 AAAAAATTAT
94546000 AAAATAA--AT
1 AAAA-AATTAT
*
94546009 -AAAAGTTAT
1 AAAAAATTAT
*
94546018 -AAATATTAT
1 AAAAAATTAT
* *
94546027 TAAATATTAAT
1 AAAAAATT-AT
94546038 AAAAAA-TATT
1 AAAAAATTA-T
* *
94546048 TAAAAATTAG
1 AAAAAATTAT
94546058 AAAAAATTAT
1 AAAAAATTAT
* **
94546068 -AAATATCGT
1 AAAAAATTAT
94546077 AAAAAA-TAT
1 AAAAAATTAT
*
94546086 AAAAAA--CT
1 AAAAAATTAT
* *
94546094 GAAAAATTTT
1 AAAAAATTAT
*
94546104 ATAAAAATCAT
1 A-AAAAATTAT
*
94546115 AAAAAAATAT
1 AAAAAATTAT
94546125 AAAA
1 AAAA
94546129 TGCATAAAAA
Statistics
Matches: 102, Mismatches: 23, Indels: 24
0.68 0.15 0.16
Matches are distributed among these distances:
7 1 0.01
8 14 0.14
9 27 0.26
10 44 0.43
11 16 0.16
ACGTcount: A:0.67, C:0.02, G:0.03, T:0.29
Consensus pattern (10 bp):
AAAAAATTAT
Found at i:94546070 original size:19 final size:19
Alignment explanation
Indices: 94545982--94546128 Score: 56
Period size: 19 Copynumber: 7.7 Consensus size: 19
94545972 GACATGTGAA
*
94545982 AAAAAATTATAAAAAATA-
1 AAAAAATTATAAAAATTAG
*
94546000 AAAATAA--ATAAAAGTTA-
1 AAAA-AATTATAAAAATTAG
* * * *
94546017 TAAATATTATTAAATATTAAT
1 AAAAAATTA-TAAAAATT-AG
*
94546038 AAAAAATATTTAAAAATTAG
1 AAAAAAT-TATAAAAATTAG
* *
94546058 AAAAAATTATAAATA-TCG
1 AAAAAATTATAAAAATTAG
*
94546076 TAAAAAA-TATAAAAAACT-G
1 -AAAAAATTAT-AAAAATTAG
* * *
94546095 AAAAATTTTATAAAAATCAT
1 AAAAA-ATTATAAAAATTAG
*
94546115 AAAAAAATATAAAA
1 AAAAAATTATAAAA
94546129 TGCATAAAAA
Statistics
Matches: 95, Mismatches: 21, Indels: 25
0.67 0.15 0.18
Matches are distributed among these distances:
16 1 0.01
17 11 0.12
18 15 0.16
19 37 0.39
20 18 0.19
21 12 0.13
22 1 0.01
ACGTcount: A:0.67, C:0.02, G:0.03, T:0.29
Consensus pattern (19 bp):
AAAAAATTATAAAAATTAG
Found at i:94546071 original size:40 final size:37
Alignment explanation
Indices: 94545981--94546090 Score: 91
Period size: 40 Copynumber: 2.9 Consensus size: 37
94545971 TGACATGTGA
*
94545981 AAAAAAATTATAAA-A-AATAAAAATAAATAAAAGTT
1 AAAAAAATTATAAATATAATAAAAATAAATAAAAATT
* * **
94546016 ATAAATATTATTAAATATTAATAAAAAATATTTAAAAATT
1 AAAAAAATTA-TAAATA-TAAT-AAAAATAAATAAAAATT
** *
94546056 AGAAAAAATTATAAATATCGTAAAAA-ATATAAAAA
1 A-AAAAAATTATAAATATAATAAAAATAAATAAAAA
94546091 ACTGAAAAAT
Statistics
Matches: 59, Mismatches: 10, Indels: 10
0.75 0.13 0.13
Matches are distributed among these distances:
35 8 0.14
36 4 0.07
37 9 0.15
38 5 0.08
39 5 0.08
40 21 0.36
41 7 0.12
ACGTcount: A:0.67, C:0.01, G:0.03, T:0.29
Consensus pattern (37 bp):
AAAAAAATTATAAATATAATAAAAATAAATAAAAATT
Found at i:94546080 original size:39 final size:39
Alignment explanation
Indices: 94546018--94546128 Score: 102
Period size: 38 Copynumber: 2.8 Consensus size: 39
94546008 TAAAAGTTAT
* * *
94546018 AAATATTATTAAATATTAATAAAAAATATTTAAAAATTAGAA
1 AAATATTA-TAAA-AATCATAAAAAATATTTAAAAACT-GAA
* * *
94546060 AAA-ATTATAAATATCGTAAAAAATA-TAAAAAACTGAA
1 AAATATTATAAAAATCATAAAAAATATTTAAAAACTGAA
* *
94546097 AAATTTTATAAAAATCATAAAAAA-ATATAAAA
1 AAATATTATAAAAATCATAAAAAATATTTAAAA
94546129 TGCATAAAAA
Statistics
Matches: 56, Mismatches: 11, Indels: 8
0.75 0.15 0.11
Matches are distributed among these distances:
37 7 0.12
38 28 0.50
39 10 0.18
40 4 0.07
41 4 0.07
42 3 0.05
ACGTcount: A:0.65, C:0.03, G:0.03, T:0.30
Consensus pattern (39 bp):
AAATATTATAAAAATCATAAAAAATATTTAAAAACTGAA
Found at i:94546091 original size:38 final size:38
Alignment explanation
Indices: 94545981--94546128 Score: 108
Period size: 39 Copynumber: 3.9 Consensus size: 38
94545971 TGACATGTGA
* * *
94545981 AAAAAAATTATAAAAA--AT-AAAAATA-AATAAAAGTT
1 AAAAATATTATAAAAATCATAAAAAATATAA-AAAACTG
* * * * *
94546016 ATAAATATTATTAAATATTAATAAAAAATATTTAAAAATTAG
1 AAAAATATTA-TAAA-AATCATAAAAAATA-TAAAAAACT-G
* *
94546058 AAAAA-ATTATAAATATCGTAAAAAATATAAAAAACTG
1 AAAAATATTATAAAAATCATAAAAAATATAAAAAACTG
*
94546095 AAAAATTTTATAAAAATCATAAAAAAATATAAAA
1 AAAAATATTATAAAAATCAT-AAAAAATATAAAA
94546129 TGCATAAAAA
Statistics
Matches: 87, Mismatches: 16, Indels: 16
0.73 0.13 0.13
Matches are distributed among these distances:
35 8 0.09
36 4 0.05
37 7 0.08
38 18 0.21
39 25 0.29
40 11 0.13
41 9 0.10
42 5 0.06
ACGTcount: A:0.67, C:0.02, G:0.03, T:0.28
Consensus pattern (38 bp):
AAAAATATTATAAAAATCATAAAAAATATAAAAAACTG
Found at i:94546128 original size:29 final size:28
Alignment explanation
Indices: 94546035--94546129 Score: 74
Period size: 29 Copynumber: 3.4 Consensus size: 28
94546025 ATTAAATATT
*
94546035 AATAAAAAATATT-TAAAAAT-TAGAAAA
1 AATATAAAATATTATAAAAATATA-AAAA
94546062 AAT-TATAAATATCGTA-AAAAATATAAAAA
1 AATATA-AAATAT--TATAAAAATATAAAAA
* *
94546091 ACTGA-AAAATTTTATAAAAATCATAAAAA
1 AAT-ATAAAATATTATAAAAAT-ATAAAAA
94546120 AATATAAAAT
1 AATATAAAAT
94546130 GCATAAAAAA
Statistics
Matches: 54, Mismatches: 4, Indels: 18
0.71 0.05 0.24
Matches are distributed among these distances:
26 1 0.02
27 11 0.20
28 7 0.13
29 32 0.59
30 3 0.06
ACGTcount: A:0.66, C:0.03, G:0.03, T:0.27
Consensus pattern (28 bp):
AATATAAAATATTATAAAAATATAAAAA
Found at i:94546392 original size:10 final size:10
Alignment explanation
Indices: 94546379--94546482 Score: 56
Period size: 11 Copynumber: 10.4 Consensus size: 10
94546369 CTTTATAAAA
94546379 TTTTATAATTT
1 TTTTATAA-TT
* *
94546390 TTTTCTATATA
1 TTTTATA-ATT
94546401 TTTTATAATT
1 TTTTATAATT
*
94546411 TTTTACAATTT
1 TTTTATAA-TT
*
94546422 TTTTCTAA-T
1 TTTTATAATT
94546431 TTTTAT-A-T
1 TTTTATAATT
*
94546439 TTTTATTAA-A
1 TTTTA-TAATT
*
94546449 TTTAATAA-T
1 TTTTATAATT
*
94546458 TTTTATTATTT
1 TTTTA-TAATT
*
94546469 TTTTATCATT
1 TTTTATAATT
94546479 TTTT
1 TTTT
94546483 GCCACATGTC
Statistics
Matches: 72, Mismatches: 15, Indels: 13
0.72 0.15 0.13
Matches are distributed among these distances:
8 7 0.10
9 14 0.19
10 23 0.32
11 27 0.38
12 1 0.01
ACGTcount: A:0.27, C:0.04, G:0.00, T:0.69
Consensus pattern (10 bp):
TTTTATAATT
Found at i:94546413 original size:9 final size:9
Alignment explanation
Indices: 94546401--94546470 Score: 52
Period size: 9 Copynumber: 7.4 Consensus size: 9
94546391 TTTCTATATA
94546401 TTTTATAATT
1 TTTTATAA-T
*
94546411 TTTTACAATTT
1 TTTTATAA--T
*
94546422 TTTTCTAAT
1 TTTTATAAT
94546431 TTTTAT-AT
1 TTTTATAAT
*
94546439 TTTTATTAAA
1 TTTTA-TAAT
*
94546449 TTTAATAAT
1 TTTTATAAT
*
94546458 TTTTATTAT
1 TTTTATAAT
94546467 TTTT
1 TTTT
94546471 TTATCATTTT
Statistics
Matches: 48, Mismatches: 9, Indels: 7
0.75 0.14 0.11
Matches are distributed among these distances:
8 7 0.15
9 21 0.44
10 12 0.25
11 8 0.17
ACGTcount: A:0.29, C:0.03, G:0.00, T:0.69
Consensus pattern (9 bp):
TTTTATAAT
Found at i:94546434 original size:22 final size:22
Alignment explanation
Indices: 94546378--94546434 Score: 71
Period size: 22 Copynumber: 2.6 Consensus size: 22
94546368 ACTTTATAAA
*
94546378 ATTTTATAATTTTTTTCTATAT
1 ATTTTATAATTTTTTTCAATAT
*
94546400 ATTTTATAATTTTTTACAAT-T
1 ATTTTATAATTTTTTTCAATAT
* *
94546421 TTTTTCTAATTTTT
1 ATTTTATAATTTTT
94546435 ATATTTTTAT
Statistics
Matches: 31, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
21 13 0.42
22 18 0.58
ACGTcount: A:0.26, C:0.05, G:0.00, T:0.68
Consensus pattern (22 bp):
ATTTTATAATTTTTTTCAATAT
Found at i:94546450 original size:19 final size:20
Alignment explanation
Indices: 94546401--94546481 Score: 62
Period size: 19 Copynumber: 4.2 Consensus size: 20
94546391 TTTCTATATA
* *
94546401 TTTTA-TAATTTTTTACAAT
1 TTTTATTAAATTTTTATAAT
*
94546420 TTTT-TTCTAATTTTTAT-AT
1 TTTTATT-AAATTTTTATAAT
*
94546439 TTTTATTAAA-TTTAATAAT
1 TTTTATTAAATTTTTATAAT
** *
94546458 TTTTATTATTTTTTTATCAT
1 TTTTATTAAATTTTTATAAT
94546478 TTTT
1 TTTT
94546482 TGCCACATGT
Statistics
Matches: 48, Mismatches: 9, Indels: 9
0.73 0.14 0.14
Matches are distributed among these distances:
18 5 0.10
19 23 0.48
20 20 0.42
ACGTcount: A:0.27, C:0.04, G:0.00, T:0.69
Consensus pattern (20 bp):
TTTTATTAAATTTTTATAAT
Found at i:94546451 original size:30 final size:32
Alignment explanation
Indices: 94546370--94546451 Score: 98
Period size: 32 Copynumber: 2.6 Consensus size: 32
94546360 TTCTTACGAC
** *
94546370 TTTATAAAATTTTATAATTTTTTTCTATATAT
1 TTTATAATTTTTTACAATTTTTTTCTATATAT
94546402 TTTATAATTTTTTACAATTTTTTTCTA-AT-T
1 TTTATAATTTTTTACAATTTTTTTCTATATAT
*
94546432 TTTATATTTTTATTA-AATTT
1 TTTATAATTTT-TTACAATTT
94546452 AATAATTTTT
Statistics
Matches: 45, Mismatches: 4, Indels: 4
0.85 0.08 0.08
Matches are distributed among these distances:
30 16 0.36
31 5 0.11
32 24 0.53
ACGTcount: A:0.30, C:0.04, G:0.00, T:0.66
Consensus pattern (32 bp):
TTTATAATTTTTTACAATTTTTTTCTATATAT
Found at i:94555444 original size:15 final size:15
Alignment explanation
Indices: 94555424--94555487 Score: 89
Period size: 15 Copynumber: 4.4 Consensus size: 15
94555414 GTATCTTGGG
94555424 TTTCTTTATTCTGGA
1 TTTCTTTATTCTGGA
94555439 TTTCTTTATTCTGGA
1 TTTCTTTATTCTGGA
*
94555454 TTTCTCTA-TCTTGGA
1 TTTCTTTATTC-TGGA
94555469 TTTCTTTATTC-GG-
1 TTTCTTTATTCTGGA
94555482 TTTCTT
1 TTTCTT
94555488 GTTATCTTTG
Statistics
Matches: 45, Mismatches: 2, Indels: 6
0.85 0.04 0.11
Matches are distributed among these distances:
13 6 0.13
14 4 0.09
15 33 0.73
16 2 0.04
ACGTcount: A:0.11, C:0.16, G:0.12, T:0.61
Consensus pattern (15 bp):
TTTCTTTATTCTGGA
Found at i:94557922 original size:46 final size:46
Alignment explanation
Indices: 94557872--94558047 Score: 160
Period size: 46 Copynumber: 3.8 Consensus size: 46
94557862 TGGTTGAGCA
*
94557872 TCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* * * * * *
94557918 TCCAAACTCATTGAGTTGAGTCCGAGTTC-GTGA--AATGTAACTAGGCA
1 TCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--A--CG
* * *
94557965 TCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAACG
1 TCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* * * * *
94558011 CCCGAGCTCGTTGAGTTGAGTTCGAGTTCGCTTATGG
1 TCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
94558048 GCGGGTTACA
Statistics
Matches: 103, Mismatches: 20, Indels: 14
0.75 0.15 0.10
Matches are distributed among these distances:
43 5 0.05
45 3 0.03
46 61 0.59
47 27 0.26
48 3 0.03
50 4 0.04
ACGTcount: A:0.23, C:0.20, G:0.27, T:0.30
Consensus pattern (46 bp):
TCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
Found at i:94558028 original size:93 final size:93
Alignment explanation
Indices: 94557869--94558040 Score: 263
Period size: 93 Copynumber: 1.8 Consensus size: 93
94557859 GGATGGTTGA
* *
94557869 GCATCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCAAACTCATTGAGT
1 GCATCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCAAACTCATTGAGT
94557934 TGAGTCCGAGTTCGTGAAATGTAACTAG
66 TGAGTCCGAGTTCGTGAAATGTAACTAG
* * * * * *
94557962 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCAAACTCATTGAGT
*
94558027 TGAGTTCGAGTTCG
66 TGAGTCCGAGTTCG
94558041 CTTATGGGCG
Statistics
Matches: 70, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
93 70 1.00
ACGTcount: A:0.24, C:0.20, G:0.27, T:0.29
Consensus pattern (93 bp):
GCATCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCAAACTCATTGAGT
TGAGTCCGAGTTCGTGAAATGTAACTAG
Found at i:94564949 original size:42 final size:42
Alignment explanation
Indices: 94564779--94564996 Score: 134
Period size: 42 Copynumber: 5.0 Consensus size: 42
94564769 AAATGCCAAA
* * ** * *
94564779 GCCATGTCCCCGACATGGTCTTACATG-GGTTTACATACCGAT
1 GCCATGTCCCAGACATGGTCTTACACGAAATCT-CATATCGAT
* * * * *
94564821 GCCATATCCCAGATATGGTCTTATACGAAGTCTCATGTCGGTGCTGAT
1 GCCATGTCCCAGACATGGTCTTACACGAAATCTCA--T--AT-C-GAT
* * ** * *
94564869 GCCATGTCCCAGGCATGGTCTTATACGGGACCTTATATCGAT
1 GCCATGTCCCAGACATGGTCTTACACGAAATCTCATATCGAT
* * *
94564911 GCCTTGTCCCAGACATGGTCTTACACGAAATCTCATATCAAC
1 GCCATGTCCCAGACATGGTCTTACACGAAATCTCATATCGAT
* * * *
94564953 GCCATATCCCAGATATGGTCTTACATGAAAT-TACATACCGAT
1 GCCATGTCCCAGACATGGTCTTACACGAAATCT-CATATCGAT
94564995 GC
1 GC
94564997 TGATGCCATA
Statistics
Matches: 134, Mismatches: 34, Indels: 16
0.73 0.18 0.09
Matches are distributed among these distances:
41 1 0.01
42 95 0.71
43 4 0.03
44 2 0.01
46 1 0.01
47 1 0.01
48 30 0.22
ACGTcount: A:0.25, C:0.27, G:0.20, T:0.28
Consensus pattern (42 bp):
GCCATGTCCCAGACATGGTCTTACACGAAATCTCATATCGAT
Found at i:94565037 original size:48 final size:49
Alignment explanation
Indices: 94564953--94565078 Score: 139
Period size: 48 Copynumber: 2.6 Consensus size: 49
94564943 TCATATCAAC
** * * * *
94564953 GCCATATCCCAGATATGGTCTTACA-TGAAATTACATACCGATGCTGAT
1 GCCATATCCCAGATATGGTCTTACACTGGCATCACATACCAACGCCGAT
* *
94565001 GCCATATCCCAAATATGGTCTTACACTGGCA-CACATATCAACGCCGAT
1 GCCATATCCCAGATATGGTCTTACACTGGCATCACATACCAACGCCGAT
* * *
94565049 ACCATGTCCCAGACATGGTCTTACACTGGC
1 GCCATATCCCAGATATGGTCTTACACTGGC
94565079 TCTCATTAGT
Statistics
Matches: 65, Mismatches: 12, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
48 62 0.95
49 3 0.05
ACGTcount: A:0.29, C:0.29, G:0.17, T:0.25
Consensus pattern (49 bp):
GCCATATCCCAGATATGGTCTTACACTGGCATCACATACCAACGCCGAT
Found at i:94567384 original size:47 final size:48
Alignment explanation
Indices: 94567183--94567391 Score: 133
Period size: 47 Copynumber: 4.3 Consensus size: 48
94567173 TAGATCATCC
* * * * * * *
94567183 ATGGTCTTATAC-GGATCAC-ATATCACTCTGATGCTATAACCCATAT
1 ATGGTCTTATACAGAAGCACAATATCACACTGATGCCATATCCTAGAT
* * *
94567229 ATGGTTTTACACAGAAGCACGTATATCAC-C-GATGCCATATTCC-AGAT
1 ATGGTCTTATACAGAAGCAC-AATATCACACTGATGCCATA-TCCTAGAT
* * * *
94567276 ATGGTATTATACAGAAGCACATAATCTCATCACACCGATGCCATAGCCTAGCT
1 ATGGTCTTATACAGAAGCAC--AA--T-ATCACACTGATGCCATATCCTAGAT
** * * *
94567329 ATAATCTTATACGGGAGCAC-ATATCACACTGATGCTATATCCTAGAT
1 ATGGTCTTATACAGAAGCACAATATCACACTGATGCCATATCCTAGAT
*
94567376 ATGGTCTTATATAGAA
1 ATGGTCTTATACAGAA
94567392 ATTACATATC
Statistics
Matches: 125, Mismatches: 27, Indels: 21
0.72 0.16 0.12
Matches are distributed among these distances:
46 10 0.08
47 66 0.53
48 5 0.04
49 7 0.06
50 2 0.02
51 5 0.04
52 3 0.02
53 27 0.22
ACGTcount: A:0.33, C:0.22, G:0.15, T:0.29
Consensus pattern (48 bp):
ATGGTCTTATACAGAAGCACAATATCACACTGATGCCATATCCTAGAT
Found at i:94569006 original size:9 final size:9
Alignment explanation
Indices: 94568994--94569061 Score: 50
Period size: 9 Copynumber: 7.4 Consensus size: 9
94568984 TCTAAATATG
94568994 TTTTATTAA
1 TTTTATTAA
*
94569003 TTTTATAAA
1 TTTTATTAA
*
94569012 TTTTCTATAA
1 TTTTAT-TAA
94569022 -TTTATTAGA
1 TTTTATTA-A
* *
94569031 TTTTTTTTA
1 TTTTATTAA
*
94569040 TTTTATAATA
1 TTTTATTA-A
94569050 TTTTATT-A
1 TTTTATTAA
94569058 TTTT
1 TTTT
94569062 CATAAGTTGA
Statistics
Matches: 45, Mismatches: 10, Indels: 9
0.70 0.16 0.14
Matches are distributed among these distances:
8 7 0.16
9 24 0.53
10 14 0.31
ACGTcount: A:0.29, C:0.01, G:0.01, T:0.68
Consensus pattern (9 bp):
TTTTATTAA
Found at i:94569052 original size:19 final size:19
Alignment explanation
Indices: 94568988--94569066 Score: 54
Period size: 19 Copynumber: 4.1 Consensus size: 19
94568978 AAATATTCTA
*
94568988 AATATGTTTTATTAATTTTAT
1 AATAT-TTTT-TTTATTTTAT
* * *
94569009 AA-ATTTTCTATAATTTAT
1 AATATTTTTTTTATTTTAT
* *
94569027 TAGATTTTTTTTATTTTAT
1 AATATTTTTTTTATTTTAT
*
94569046 AATA-TTTTATTATTTTCAT
1 AATATTTTTTTTATTTT-AT
94569065 AA
1 AA
94569067 GTTGATACCA
Statistics
Matches: 45, Mismatches: 11, Indels: 6
0.73 0.18 0.10
Matches are distributed among these distances:
18 19 0.42
19 22 0.49
20 2 0.04
21 2 0.04
ACGTcount: A:0.33, C:0.03, G:0.03, T:0.62
Consensus pattern (19 bp):
AATATTTTTTTTATTTTAT
Found at i:94569053 original size:18 final size:18
Alignment explanation
Indices: 94568988--94569066 Score: 54
Period size: 18 Copynumber: 4.1 Consensus size: 18
94568978 AAATATTCTA
94568988 AATATGTTTTATTAATTTTAT
1 AATAT-TTTT-TT-ATTTTAT
* *
94569009 AA-ATTTTCTATAATTTATT
1 AATATTTT-TTTATTTTA-T
94569028 AGAT-TTTTTTTATTTTAT
1 A-ATATTTTTTTATTTTAT
*
94569046 AATATTTTATTATTTTCAT
1 AATATTTTTTTATTTT-AT
94569065 AA
1 AA
94569067 GTTGATACCA
Statistics
Matches: 47, Mismatches: 5, Indels: 14
0.71 0.08 0.21
Matches are distributed among these distances:
17 2 0.04
18 18 0.38
19 17 0.36
20 8 0.17
21 2 0.04
ACGTcount: A:0.33, C:0.03, G:0.03, T:0.62
Consensus pattern (18 bp):
AATATTTTTTTATTTTAT
Found at i:94570278 original size:15 final size:15
Alignment explanation
Indices: 94570258--94570287 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
94570248 CATATGGAGT
94570258 TTTCAATTTTCATTA
1 TTTCAATTTTCATTA
94570273 TTTCAATTTTCATTA
1 TTTCAATTTTCATTA
94570288 CATATATAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.27, C:0.13, G:0.00, T:0.60
Consensus pattern (15 bp):
TTTCAATTTTCATTA
Found at i:94571973 original size:12 final size:12
Alignment explanation
Indices: 94571950--94571998 Score: 66
Period size: 12 Copynumber: 4.2 Consensus size: 12
94571940 TCAAACTACA
94571950 TGTTCTT-T-CT
1 TGTTCTTGTCCT
*
94571960 TGTTCTTGTTCT
1 TGTTCTTGTCCT
94571972 TGTTCTTGTCCT
1 TGTTCTTGTCCT
*
94571984 TGTCCTTGTCCT
1 TGTTCTTGTCCT
94571996 TGT
1 TGT
94571999 CCATCTCACT
Statistics
Matches: 35, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
10 7 0.20
11 1 0.03
12 27 0.77
ACGTcount: A:0.00, C:0.22, G:0.16, T:0.61
Consensus pattern (12 bp):
TGTTCTTGTCCT
Found at i:94571999 original size:6 final size:6
Alignment explanation
Indices: 94571958--94572000 Score: 59
Period size: 6 Copynumber: 7.2 Consensus size: 6
94571948 CATGTTCTTT
* * *
94571958 CTTGTT CTTGTT CTTGTT CTTGTC CTTGTC CTTGTC CTTGTC C
1 CTTGTC CTTGTC CTTGTC CTTGTC CTTGTC CTTGTC CTTGTC C
94572001 ATCTCACTTT
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
6 36 1.00
ACGTcount: A:0.00, C:0.28, G:0.16, T:0.56
Consensus pattern (6 bp):
CTTGTC
Found at i:94572609 original size:10 final size:9
Alignment explanation
Indices: 94572592--94572616 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
94572582 GAATTTAAGG
94572592 ATAAAAAAA
1 ATAAAAAAA
94572601 ATAAAAAAA
1 ATAAAAAAA
94572610 ATAAAAA
1 ATAAAAA
94572617 GGTATAGCAG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.88, C:0.00, G:0.00, T:0.12
Consensus pattern (9 bp):
ATAAAAAAA
Found at i:94577925 original size:27 final size:27
Alignment explanation
Indices: 94577809--94577937 Score: 152
Period size: 27 Copynumber: 4.8 Consensus size: 27
94577799 TACATCATGT
* * * * *
94577809 AGGGCTAAATAATCATCTTATCACCTA
1 AGGGCAAAATAGTCATTTTACCACATA
*
94577836 AGGGCAAATTAGTCATTTTACCACATA
1 AGGGCAAAATAGTCATTTTACCACATA
*
94577863 AGGGCAAAACT-GTCATTTTACCACATG
1 AGGGCAAAA-TAGTCATTTTACCACATA
* * *
94577890 AGGGCAAAATAGTTAGTTTATCACATA
1 AGGGCAAAATAGTCATTTTACCACATA
94577917 AGGGCAAAATAGTCATTTTAC
1 AGGGCAAAATAGTCATTTTAC
94577938 TTTACAGGGG
Statistics
Matches: 85, Mismatches: 15, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
26 1 0.01
27 83 0.98
28 1 0.01
ACGTcount: A:0.37, C:0.18, G:0.16, T:0.29
Consensus pattern (27 bp):
AGGGCAAAATAGTCATTTTACCACATA
Found at i:94577974 original size:27 final size:26
Alignment explanation
Indices: 94577944--94578043 Score: 112
Period size: 27 Copynumber: 3.7 Consensus size: 26
94577934 TTACTTTACA
* *
94577944 GGGGTATTACAGTCATTTTATCCTACT
1 GGGGTATTACGGTCATTTTACCCTA-T
94577971 GGGGTATTTA-GGTCATTTTACCCTAT
1 GGGGTA-TTACGGTCATTTTACCCTAT
* *
94577997 GAGGGTATTTCGGTTATTTTACCCTAT
1 G-GGGTATTACGGTCATTTTACCCTAT
*
94578024 GGGGGTATTTCGGTCATTTT
1 -GGGGTATTACGGTCATTTT
94578044 CAAGTAAATA
Statistics
Matches: 64, Mismatches: 5, Indels: 8
0.83 0.06 0.10
Matches are distributed among these distances:
26 4 0.06
27 56 0.88
28 4 0.06
ACGTcount: A:0.18, C:0.15, G:0.24, T:0.43
Consensus pattern (26 bp):
GGGGTATTACGGTCATTTTACCCTAT
Found at i:94577986 original size:54 final size:54
Alignment explanation
Indices: 94577928--94578043 Score: 128
Period size: 54 Copynumber: 2.1 Consensus size: 54
94577918 GGGCAAAATA
** *
94577928 GTCATTTTACTTTACAG-GGGTATTACAGTCATTTTATCCTACT-GGGGTATTTAG
1 GTCATTTTACCCTA-AGAGGGTATTACAGTCATTTTACCCTA-TGGGGGTATTTAG
* * * * *
94577982 GTCATTTTACCCTATGAGGGTATTTCGGTTATTTTACCCTATGGGGGTATTTCG
1 GTCATTTTACCCTAAGAGGGTATTACAGTCATTTTACCCTATGGGGGTATTTAG
94578036 GTCATTTT
1 GTCATTTT
94578044 CAAGTAAATA
Statistics
Matches: 52, Mismatches: 8, Indels: 4
0.81 0.12 0.06
Matches are distributed among these distances:
53 2 0.04
54 50 0.96
ACGTcount: A:0.19, C:0.16, G:0.22, T:0.44
Consensus pattern (54 bp):
GTCATTTTACCCTAAGAGGGTATTACAGTCATTTTACCCTATGGGGGTATTTAG
Found at i:94587331 original size:40 final size:40
Alignment explanation
Indices: 94587285--94587509 Score: 281
Period size: 40 Copynumber: 5.6 Consensus size: 40
94587275 CTTGCACAAG
* * *
94587285 GCCTTCGGGTCTTAGCCCGGATGTGGTCACTAGCATAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
* *
94587325 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
* * *
94587365 GCCTTCGGGTTTTAGCCCGGATATAATCGCTAGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
* *
94587405 GCCTTCGGGTCTTAGCCCGGATATAG-CAACTCGCACGAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTC-ACTAGCACAAAT
* ** * *
94587445 GCCTTCGGATCTTAGTTCGGTTATAGTCACCTAGCACAAAA
1 GCCTTCGGGTCTTAGCCCGGATATAGTCA-CTAGCACAAAT
*
94587486 GCCTTCGGGACTTAGCCCGGATAT
1 GCCTTCGGGTCTTAGCCCGGATAT
94587510 CATTCGAATA
Statistics
Matches: 157, Mismatches: 25, Indels: 5
0.84 0.13 0.03
Matches are distributed among these distances:
39 1 0.01
40 128 0.82
41 28 0.18
ACGTcount: A:0.23, C:0.27, G:0.24, T:0.26
Consensus pattern (40 bp):
GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
Found at i:94595525 original size:40 final size:40
Alignment explanation
Indices: 94595479--94595703 Score: 290
Period size: 40 Copynumber: 5.6 Consensus size: 40
94595469 CTTGCACAAG
* * *
94595479 GCCTTCGGGTCTTAGCCCGGATGTGGTCACTAGCATAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
* *
94595519 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
* * *
94595559 GCCTTCGGGTTTTAGCCCGGATATAATCGCTAGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
* *
94595599 GCCTTCGGGTCTTAGCCCGGATATAG-CAACTCGCACGAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTC-ACTAGCACAAAT
* * * *
94595639 GCCTTCGGATCTTAGTCCGGTTATAGTCACCTAGCACAAAA
1 GCCTTCGGGTCTTAGCCCGGATATAGTCA-CTAGCACAAAT
*
94595680 GCCTTCGGGACTTAGCCCGGATAT
1 GCCTTCGGGTCTTAGCCCGGATAT
94595704 CATTCGAATA
Statistics
Matches: 159, Mismatches: 23, Indels: 5
0.85 0.12 0.03
Matches are distributed among these distances:
39 1 0.01
40 129 0.81
41 29 0.18
ACGTcount: A:0.23, C:0.27, G:0.24, T:0.25
Consensus pattern (40 bp):
GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
Found at i:94595574 original size:80 final size:80
Alignment explanation
Indices: 94595443--94595703 Score: 312
Period size: 80 Copynumber: 3.3 Consensus size: 80
94595433 CTCAAGAAAT
* * * * * * *
94595443 CTTCGGGATTTAG-CCGGATATAACTACTTGCAC-AAGGCCTTCGGGTCTTAGCCCGGATGTGGT
1 CTTCGGGACTTAGCCCGGATATAGCAACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATAGT
*
94595506 CACTAGCATAAATGC
66 CACTAGCACAAATGC
* * *
94595521 CTTCGGGACTTAGCCCGGATATAGTC-GCTAGCACAAATGCCTTCGGGTTTTAGCCCGGATATAA
1 CTTCGGGACTTAGCCCGGATATAG-CAACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATAG
*
94595585 TCGCTAGCACAAATGC
65 TCACTAGCACAAATGC
* * * * * *
94595601 CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACGAATGCCTTCGGATCTTAGTCCGGTTATAGT
1 CTTCGGGACTTAGCCCGGATATAGCAACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATAGT
*
94595666 CACCTAGCACAAAAGC
66 CA-CTAGCACAAATGC
94595682 CTTCGGGACTTAGCCCGGATAT
1 CTTCGGGACTTAGCCCGGATAT
94595704 CATTCGAATA
Statistics
Matches: 155, Mismatches: 23, Indels: 7
0.84 0.12 0.04
Matches are distributed among these distances:
78 12 0.08
79 16 0.10
80 94 0.61
81 33 0.21
ACGTcount: A:0.24, C:0.26, G:0.24, T:0.26
Consensus pattern (80 bp):
CTTCGGGACTTAGCCCGGATATAGCAACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATAGT
CACTAGCACAAATGC
Found at i:94597152 original size:27 final size:27
Alignment explanation
Indices: 94597100--94597152 Score: 63
Period size: 27 Copynumber: 2.0 Consensus size: 27
94597090 CATCACTCCA
*
94597100 CCTTTTTGTATTACTTTAATCCTAACC
1 CCTTTTTGTATTACTTTAATCATAACC
* *
94597127 CCTTTTTTTATTATTTCTAA-CATAAC
1 CCTTTTTGTATTACTT-TAATCATAAC
94597153 TCACTAACAC
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
27 19 0.86
28 3 0.14
ACGTcount: A:0.25, C:0.23, G:0.02, T:0.51
Consensus pattern (27 bp):
CCTTTTTGTATTACTTTAATCATAACC
Found at i:94600951 original size:24 final size:24
Alignment explanation
Indices: 94600923--94600970 Score: 87
Period size: 24 Copynumber: 2.0 Consensus size: 24
94600913 ATTTTGTACT
*
94600923 TTGGCCCATTTTTTCCGTTTTTGG
1 TTGGCCCATTTTCTCCGTTTTTGG
94600947 TTGGCCCATTTTCTCCGTTTTTGG
1 TTGGCCCATTTTCTCCGTTTTTGG
94600971 CCCGTTTCTC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.04, C:0.23, G:0.21, T:0.52
Consensus pattern (24 bp):
TTGGCCCATTTTCTCCGTTTTTGG
Found at i:94611703 original size:46 final size:46
Alignment explanation
Indices: 94611653--94611821 Score: 193
Period size: 46 Copynumber: 3.7 Consensus size: 46
94611643 TGAGCATCCA
94611653 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCG
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCG
* * *
94611699 AACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGGCATCCG
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G--TCCG
* * *
94611746 AACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAACGCCCG
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCG
* *
94611792 AGCTCATTGAGTTGAGTCCGAGTTCACTTA
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTA
94611822 GGGGCGGGTT
Statistics
Matches: 103, Mismatches: 11, Indels: 18
0.78 0.08 0.14
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 55 0.53
47 29 0.28
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.22, C:0.20, G:0.28, T:0.30
Consensus pattern (46 bp):
AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCG
Found at i:94611805 original size:93 final size:93
Alignment explanation
Indices: 94611646--94611816 Score: 288
Period size: 93 Copynumber: 1.8 Consensus size: 93
94611636 GGATGGTTGA
* * *
94611646 GCATCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCATTGAGT
94611711 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* * *
94611739 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAACGCCCGAGCTCATTGAGT
1 GCATCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCATTGAGT
94611804 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
94611817 ACTTAGGGGC
Statistics
Matches: 72, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.29
Consensus pattern (93 bp):
GCATCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCATTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:94612083 original size:19 final size:20
Alignment explanation
Indices: 94612046--94612083 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
94612036 ATAAGGTAGT
94612046 AAGATGATGAATGATGTTTA
1 AAGATGATGAATGATGTTTA
94612066 AAGATG-TGATAT-ATGTTT
1 AAGATGATGA-ATGATGTTT
94612084 TGGTGGTATC
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.37, C:0.00, G:0.24, T:0.39
Consensus pattern (20 bp):
AAGATGATGAATGATGTTTA
Found at i:94619595 original size:30 final size:30
Alignment explanation
Indices: 94619559--94619619 Score: 122
Period size: 30 Copynumber: 2.0 Consensus size: 30
94619549 GTCAAGCCCG
94619559 TTAGGAAAGCATGTGATAGTTGATAAAGTA
1 TTAGGAAAGCATGTGATAGTTGATAAAGTA
94619589 TTAGGAAAGCATGTGATAGTTGATAAAGTA
1 TTAGGAAAGCATGTGATAGTTGATAAAGTA
94619619 T
1 T
94619620 GTAAGAAATG
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.39, C:0.03, G:0.26, T:0.31
Consensus pattern (30 bp):
TTAGGAAAGCATGTGATAGTTGATAAAGTA
Found at i:94645099 original size:309 final size:309
Alignment explanation
Indices: 94644540--94645160 Score: 1082
Period size: 309 Copynumber: 2.0 Consensus size: 309
94644530 TGTATGGTAG
* * *
94644540 TAAACATATGGGCAAAGACACGACTGTGTGTCTCAACCGTGTGGAGGACACGGCCTAGTACACGG
1 TAAACATACGGGCAAAGACACGACTGTGTGTCTCAACCGTGTAGAGGACACGGCCTAGCACACGG
*
94644605 GCGTGTGCCTTGGCTGTGTGCCTCAAAATGAATGATGATGTCATAAAAAGAATGTCCGAGTTTTT
66 GCGTGTGCCTTGGCTGTGTGCCTCAAAATGAATGATGATGTCATAAAAAGAATGTCCAAGTTTTT
*
94644670 GGACATGGGCGATGACATGGGCGTGTCTAGTCCTTGTGAGAGACACGGGCTAGAGACACGAGTGT
131 GGACATGGGCGATGACATGGGCGTGTCTAGGCCTTGTGAGAGACACGGGCTAGAGACACGAGTGT
* * * *
94644735 GTGTTTGGCCATGTGAAAACCCTTGTAGGCTCAGAATGAAAAATAAATTCCAATAATTCAACATG
196 GTGTTCGGACATGTGAAAACCCCTGTAGGCTCAGAATGAAAAATAAATTCCAATAATTCAACACG
* *
94644800 GGTAAGAGATACGAGTGTGTGCATTGCCTCTACACGGGCGTGTGAGGCT
261 GGTAAGAGATACGAGTGTGTGCATTGCCTCTACACAGGCGTCTGAGGCT
*
94644849 TAAACATACGGGCAGAGACACGACTGTGTGTCTCAACCGTGTAGAGGACACGGCCTAGCACACGG
1 TAAACATACGGGCAAAGACACGACTGTGTGTCTCAACCGTGTAGAGGACACGGCCTAGCACACGG
** *
94644914 GCGTGTGCCTTGGCTGTGTGCCTCAAAATGAATGATGATGTCATAAATGGAATGTCTAAGTTTTT
66 GCGTGTGCCTTGGCTGTGTGCCTCAAAATGAATGATGATGTCATAAAAAGAATGTCCAAGTTTTT
*
94644979 GGACATGGGCGATGACATGGGCGTGTCTAGGCCTTGTGAGGGACACGGGCTAGAGACACGAGTGT
131 GGACATGGGCGATGACATGGGCGTGTCTAGGCCTTGTGAGAGACACGGGCTAGAGACACGAGTGT
94645044 GTGTTCGGACATGTGAAAACCCCTGTAGGCTC-GAAATGAAAAATAAATTCCAATAATTCAACAC
196 GTGTTCGGACATGTGAAAACCCCTGTAGGCTCAG-AATGAAAAATAAATTCCAATAATTCAACAC
94645108 GGGTAAGAGATACGAGTGTGTGCATTGCCTCTACACAGGCGTCTGAGGCT
260 GGGTAAGAGATACGAGTGTGTGCATTGCCTCTACACAGGCGTCTGAGGCT
94645158 TAA
1 TAA
94645161 CCCTAGGAAT
Statistics
Matches: 295, Mismatches: 16, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
308 1 0.00
309 294 1.00
ACGTcount: A:0.28, C:0.19, G:0.29, T:0.24
Consensus pattern (309 bp):
TAAACATACGGGCAAAGACACGACTGTGTGTCTCAACCGTGTAGAGGACACGGCCTAGCACACGG
GCGTGTGCCTTGGCTGTGTGCCTCAAAATGAATGATGATGTCATAAAAAGAATGTCCAAGTTTTT
GGACATGGGCGATGACATGGGCGTGTCTAGGCCTTGTGAGAGACACGGGCTAGAGACACGAGTGT
GTGTTCGGACATGTGAAAACCCCTGTAGGCTCAGAATGAAAAATAAATTCCAATAATTCAACACG
GGTAAGAGATACGAGTGTGTGCATTGCCTCTACACAGGCGTCTGAGGCT
Found at i:94648122 original size:18 final size:18
Alignment explanation
Indices: 94648085--94648123 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 18
94648075 TTTAAAATTA
* **
94648085 TGGGCCCACATGCCTGTG
1 TGGGCCCACACGCCCATG
94648103 TGGGCCCACACGCCCATG
1 TGGGCCCACACGCCCATG
94648121 TGG
1 TGG
94648124 CTTACAAGCC
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.13, C:0.36, G:0.33, T:0.18
Consensus pattern (18 bp):
TGGGCCCACACGCCCATG
Found at i:94654101 original size:46 final size:43
Alignment explanation
Indices: 94653958--94654093 Score: 123
Period size: 47 Copynumber: 3.0 Consensus size: 43
94653948 CCCGCCAATA
94653958 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTA-CATTT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCC-A---ACCA-TT
* * * * *
94654005 CA-CGAGCTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATA
1 -AGTGAACTCGGACTCAACTCAACGAGTTCGG--ATGC-CAACCATT
94654051 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCAT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGC-CAACCAT
94654094 CCTAGTGACA
Statistics
Matches: 73, Mismatches: 10, Indels: 14
0.75 0.10 0.14
Matches are distributed among these distances:
44 9 0.12
45 1 0.01
46 28 0.38
47 29 0.40
48 1 0.01
49 4 0.05
50 1 0.01
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.23
Consensus pattern (43 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCAACCATT
Found at i:94661553 original size:46 final size:46
Alignment explanation
Indices: 94661449--94661577 Score: 158
Period size: 46 Copynumber: 2.8 Consensus size: 46
94661439 TGTAACCCGC
94661449 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG-ATGCCTAGTT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGAATGCCTAG-T
* * * *
94661495 ACATTCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGC-A-T
1 CCA-TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA-ATGC-CTAGT
94661541 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
94661578 TGCTCAACCA
Statistics
Matches: 71, Mismatches: 7, Indels: 10
0.81 0.08 0.11
Matches are distributed among these distances:
45 2 0.03
46 62 0.87
47 2 0.03
48 4 0.06
49 1 0.01
ACGTcount: A:0.30, C:0.28, G:0.20, T:0.22
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGAATGCCTAGT
Found at i:94662033 original size:30 final size:30
Alignment explanation
Indices: 94661999--94662058 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 30
94661989 ATTTAATACG
94661999 AACTTTAAG-AAAATTACACTTTTGCCCCTA
1 AACTTT-AGCAAAATTACACTTTTGCCCCTA
* *
94662029 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTAGCAAAATTACACTTTTGCCCCTA
94662059 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
29 1 0.04
30 26 0.96
ACGTcount: A:0.32, C:0.25, G:0.07, T:0.37
Consensus pattern (30 bp):
AACTTTAGCAAAATTACACTTTTGCCCCTA
Found at i:94670752 original size:170 final size:170
Alignment explanation
Indices: 94670542--94670871 Score: 615
Period size: 170 Copynumber: 1.9 Consensus size: 170
94670532 GTCAAGGTGT
94670542 ACTAATCTATATTCATGGATGAACATATTTATTAAACAGATTCCATGTTCATATATCATCAACTT
1 ACTAATCTATATTCATGGATGAACATATTTATTAAACAGATTCCATGTTCATATATCATCAACTT
* *
94670607 GTATTTCGATAAATCACGTATCATAATTTCATGTATTTCAGGTAGACACTTGTAATAATTCATTT
66 ATATTTCCATAAATCACGTATCATAATTTCATGTATTTCAGGTAGACACTTGTAATAATTCATTT
94670672 CTTGTTCATATTTTCTTATGTCAGAATTTTACCCGTTCAA
131 CTTGTTCATATTTTCTTATGTCAGAATTTTACCCGTTCAA
94670712 ACTAATCTATATTCATGGATGAACATATTTATTAAACAGATTCCATGTTCATATATCATCAACTT
1 ACTAATCTATATTCATGGATGAACATATTTATTAAACAGATTCCATGTTCATATATCATCAACTT
* *
94670777 ATATTTCCATAAGTCATGTATCATAATTTCATGTATTTCAGGTAGACACTTGTAATAATTCATTT
66 ATATTTCCATAAATCACGTATCATAATTTCATGTATTTCAGGTAGACACTTGTAATAATTCATTT
*
94670842 CTTGTTCATATTTTCTTATGTTAGAATTTT
131 CTTGTTCATATTTTCTTATGTCAGAATTTT
94670872 TCTCATTCAA
Statistics
Matches: 155, Mismatches: 5, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
170 155 1.00
ACGTcount: A:0.32, C:0.15, G:0.10, T:0.43
Consensus pattern (170 bp):
ACTAATCTATATTCATGGATGAACATATTTATTAAACAGATTCCATGTTCATATATCATCAACTT
ATATTTCCATAAATCACGTATCATAATTTCATGTATTTCAGGTAGACACTTGTAATAATTCATTT
CTTGTTCATATTTTCTTATGTCAGAATTTTACCCGTTCAA
Found at i:94671377 original size:20 final size:20
Alignment explanation
Indices: 94671349--94671387 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
94671339 ACGCTCACAA
94671349 AGAGCTGCAGTAGTCGTAAG
1 AGAGCTGCAGTAGTCGTAAG
*
94671369 AGAGTTGCAGTAGTCGTAA
1 AGAGCTGCAGTAGTCGTAA
94671388 CACATGCAAT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.31, C:0.13, G:0.33, T:0.23
Consensus pattern (20 bp):
AGAGCTGCAGTAGTCGTAAG
Found at i:94674502 original size:39 final size:39
Alignment explanation
Indices: 94674450--94674684 Score: 380
Period size: 39 Copynumber: 6.0 Consensus size: 39
94674440 AATTATATTA
* *
94674450 CCAGCACAAAGCCTGCGGGACTTTAGCTCGGATACATTT
1 CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
* *
94674489 CCAACACGAAGCCTGTGGGACTTTAGCCCGGATACATTT
1 CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
* *
94674528 CCAGCACGAAGCCTGCGAGACTTTAGCCCGGATATATTT
1 CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
* * * *
94674567 CCACCACGAAGCCTGCAGAACTTTAGCCCAGATACATTT
1 CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
94674606 CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
1 CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
94674645 CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
1 CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
94674684 C
1 C
94674685 TAGTGTCTTG
Statistics
Matches: 178, Mismatches: 18, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
39 178 1.00
ACGTcount: A:0.26, C:0.30, G:0.23, T:0.22
Consensus pattern (39 bp):
CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
Found at i:94684879 original size:32 final size:32
Alignment explanation
Indices: 94684836--94684897 Score: 79
Period size: 32 Copynumber: 1.9 Consensus size: 32
94684826 GGCCAGGCCG
* **
94684836 TGTGGGCCACACAGGCAAGGTTAATTTGGGCA
1 TGTGGGACACACAGGCAAGGCCAATTTGGGCA
* *
94684868 TGTGGGACACACGGGTAAGGCCAATTTGGG
1 TGTGGGACACACAGGCAAGGCCAATTTGGG
94684898 TGTGCGGGCC
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
32 25 1.00
ACGTcount: A:0.24, C:0.18, G:0.37, T:0.21
Consensus pattern (32 bp):
TGTGGGACACACAGGCAAGGCCAATTTGGGCA
Found at i:94690854 original size:40 final size:40
Alignment explanation
Indices: 94690624--94690855 Score: 324
Period size: 40 Copynumber: 5.8 Consensus size: 40
94690614 CATTTGAATG
* * *
94690624 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAG-TGATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGA-T
* * * *
94690664 TTATCCGGGCTAAGTCCCGAAGGCATTTATGCTAG-TGATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGA-T
*
94690704 TTATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGAT
94690744 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGAT
*
94690784 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGAT
* * *
94690824 ATACCCGGGTTAAGACCCGAAGGCAATTGTGC
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGC
94690856 TTGTGGTTAT
Statistics
Matches: 182, Mismatches: 9, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
40 179 0.98
41 3 0.02
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.27
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGAT
Found at i:94698765 original size:84 final size:84
Alignment explanation
Indices: 94698619--94698791 Score: 337
Period size: 84 Copynumber: 2.1 Consensus size: 84
94698609 TTATGAAAAC
*
94698619 ATGATTTAGGAACTAAAATGAAAAGTTGTAAAATTGGATGAAAAATTCTGAAATTTTATGAATAC
1 ATGAGTTAGGAACTAAAATGAAAAGTTGTAAAATTGGATGAAAAATTCTGAAATTTTATGAATAC
94698684 ATGTGCTGTAAAATTTGTA
66 ATGTGCTGTAAAATTTGTA
94698703 ATGAGTTAGGAACTAAAATGAAAAGTTGTAAAATTGGATGAAAAATTCTGAAATTTTATGAATAC
1 ATGAGTTAGGAACTAAAATGAAAAGTTGTAAAATTGGATGAAAAATTCTGAAATTTTATGAATAC
94698768 ATGTGCTGTAAAATTTGTA
66 ATGTGCTGTAAAATTTGTA
94698787 ATGAG
1 ATGAG
94698792 GCTTTGGTTA
Statistics
Matches: 88, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
84 88 1.00
ACGTcount: A:0.43, C:0.05, G:0.19, T:0.34
Consensus pattern (84 bp):
ATGAGTTAGGAACTAAAATGAAAAGTTGTAAAATTGGATGAAAAATTCTGAAATTTTATGAATAC
ATGTGCTGTAAAATTTGTA
Found at i:94715791 original size:14 final size:13
Alignment explanation
Indices: 94715771--94715807 Score: 58
Period size: 14 Copynumber: 2.8 Consensus size: 13
94715761 AATATTTGAC
94715771 TTGTTCTTAATTA
1 TTGTTCTTAATTA
94715784 TGTGTTCTTAATTA
1 T-TGTTCTTAATTA
94715798 TTGTT-TTAAT
1 TTGTTCTTAAT
94715808 ATTCTAGGAT
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
12 5 0.22
13 5 0.22
14 13 0.57
ACGTcount: A:0.22, C:0.05, G:0.11, T:0.62
Consensus pattern (13 bp):
TTGTTCTTAATTA
Found at i:94717560 original size:29 final size:29
Alignment explanation
Indices: 94717518--94717578 Score: 113
Period size: 29 Copynumber: 2.1 Consensus size: 29
94717508 TCTAATAAAA
94717518 AACATAATAAAATAATGCACCAGGTAGGT
1 AACATAATAAAATAATGCACCAGGTAGGT
*
94717547 AACATAATAAAATAATGCACTAGGTAGGT
1 AACATAATAAAATAATGCACCAGGTAGGT
94717576 AAC
1 AAC
94717579 TCTAAAAGAG
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 31 1.00
ACGTcount: A:0.49, C:0.13, G:0.16, T:0.21
Consensus pattern (29 bp):
AACATAATAAAATAATGCACCAGGTAGGT
Found at i:94726935 original size:43 final size:41
Alignment explanation
Indices: 94726888--94727046 Score: 133
Period size: 43 Copynumber: 3.8 Consensus size: 41
94726878 TGTTCTCGAT
*
94726888 TAAGACCACGTCTGGGACGTTGGCATTGATATGTGGTTACGAG
1 TAAGACCACGTCTGGGACATTGGCATTG-TATGTGGTTA-GAG
* * * * * * *
94726931 TAAGACCATGTCTGGGACATCGGCATCGTATTTGATTTGTG
1 TAAGACCACGTCTGGGACATTGGCATTGTATGTGGTTAGAG
* * *
94726972 TAAGACC-CTGTCTGGGACAATGGCATTGATATG-AGATAGCATG
1 TAAGACCAC-GTCTGGGACATTGGCATTG-TATGTGGTTAG-A-G
* *
94727015 TAAGACCACGTCTAGGACGTTGGCATTGTATG
1 TAAGACCACGTCTGGGACATTGGCATTGTATG
94727047 GTATATGTGA
Statistics
Matches: 90, Mismatches: 21, Indels: 11
0.74 0.17 0.09
Matches are distributed among these distances:
41 27 0.30
42 14 0.16
43 48 0.53
44 1 0.01
ACGTcount: A:0.25, C:0.17, G:0.29, T:0.29
Consensus pattern (41 bp):
TAAGACCACGTCTGGGACATTGGCATTGTATGTGGTTAGAG
Found at i:94740068 original size:40 final size:40
Alignment explanation
Indices: 94739919--94740099 Score: 185
Period size: 40 Copynumber: 4.6 Consensus size: 40
94739909 GAATGATGTC
* * * * *
94739919 CGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATC
1 CGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAATA
* * * *
94739959 CGGACTAAGAT-CCGAAGGCATTTCTGCGAGATACT-AATT
1 CGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAATA
94739998 CGGGCTAAG-CCCGAAGGCA-TTGTGCGAGTTACTAAATA
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATA
* *
94740036 CGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA-C
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AATA
*
94740076 CGGGCTATGTCCCGAAGGCATTTG
1 CGGGCTAAGTCCCGAAGGCATTTG
94740100 AACGAGTAGC
Statistics
Matches: 118, Mismatches: 16, Indels: 14
0.80 0.11 0.09
Matches are distributed among these distances:
37 12 0.10
38 20 0.17
39 20 0.17
40 57 0.48
41 9 0.08
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATA
Found at i:94740130 original size:79 final size:77
Alignment explanation
Indices: 94739969--94740132 Score: 181
Period size: 79 Copynumber: 2.1 Consensus size: 77
94739959 CGGACTAAGA
**
94739969 TCCGAAGGCATTTCTGCGAGATACTAATTCGGGCTAAGCCCGAAGGCATTGTGCGAGTTACTAAA
1 TCCGAAGGCATTTCTGCGAGATACTAAACCGGGCTAAGCCCGAAGGCATTGTGCGAGTTACTAAA
* *
94740034 TACGGGTTAAGT
66 TACCGGTTAAAT
* * * *
94740046 CCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTATGTCCCGAAGGCATT-TGAACGAG-TAG
1 TCCGAAGGCATTTCTGCGAGATACTA-AACCGGGCTAAG-CCCGAAGGCATTGTG--CGAGTTA-
*
94740109 CTATAT-CCGGTTAAAT
61 CTAAATACCGGTTAAAT
94740125 TCCGAAGG
1 TCCGAAGG
94740133 TATGTGATTT
Statistics
Matches: 72, Mismatches: 10, Indels: 8
0.80 0.11 0.09
Matches are distributed among these distances:
77 23 0.32
78 11 0.15
79 29 0.40
80 9 0.12
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.26
Consensus pattern (77 bp):
TCCGAAGGCATTTCTGCGAGATACTAAACCGGGCTAAGCCCGAAGGCATTGTGCGAGTTACTAAA
TACCGGTTAAAT
Found at i:94743200 original size:15 final size:15
Alignment explanation
Indices: 94743180--94743233 Score: 83
Period size: 15 Copynumber: 3.6 Consensus size: 15
94743170 ATATTGTATT
94743180 TTGGATTTCTTTATC
1 TTGGATTTCTTTATC
94743195 TTGGATTTCTTTATC
1 TTGGATTTCTTTATC
94743210 TTGGACTTT-TTTATC
1 TTGGA-TTTCTTTATC
*
94743225 TTGGTTTTC
1 TTGGATTTC
94743234 ATGTCATCTC
Statistics
Matches: 36, Mismatches: 1, Indels: 4
0.88 0.02 0.10
Matches are distributed among these distances:
14 3 0.08
15 30 0.83
16 3 0.08
ACGTcount: A:0.11, C:0.13, G:0.15, T:0.61
Consensus pattern (15 bp):
TTGGATTTCTTTATC
Found at i:94747007 original size:13 final size:13
Alignment explanation
Indices: 94746989--94747018 Score: 60
Period size: 13 Copynumber: 2.3 Consensus size: 13
94746979 ATAAATTGTA
94746989 CTTATTGGCTAAT
1 CTTATTGGCTAAT
94747002 CTTATTGGCTAAT
1 CTTATTGGCTAAT
94747015 CTTA
1 CTTA
94747019 AATTCTGGAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.23, C:0.17, G:0.13, T:0.47
Consensus pattern (13 bp):
CTTATTGGCTAAT
Found at i:94747911 original size:51 final size:51
Alignment explanation
Indices: 94747835--94747938 Score: 208
Period size: 51 Copynumber: 2.0 Consensus size: 51
94747825 CTTTGATGTT
94747835 GTACAAGTGTGTGAGGGATTAAGGTTGACCAAGGCTTGGAAAATAGCCTAA
1 GTACAAGTGTGTGAGGGATTAAGGTTGACCAAGGCTTGGAAAATAGCCTAA
94747886 GTACAAGTGTGTGAGGGATTAAGGTTGACCAAGGCTTGGAAAATAGCCTAA
1 GTACAAGTGTGTGAGGGATTAAGGTTGACCAAGGCTTGGAAAATAGCCTAA
94747937 GT
1 GT
94747939 GTTGGCCACA
Statistics
Matches: 53, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
51 53 1.00
ACGTcount: A:0.33, C:0.12, G:0.32, T:0.24
Consensus pattern (51 bp):
GTACAAGTGTGTGAGGGATTAAGGTTGACCAAGGCTTGGAAAATAGCCTAA
Found at i:94751192 original size:46 final size:46
Alignment explanation
Indices: 94751046--94751194 Score: 165
Period size: 46 Copynumber: 3.2 Consensus size: 46
94751036 GTACTAGTTC
* * **
94751046 AAGACATGTCTGGGACATACATCGGCCACATTATGAGAGCCAGTGT
1 AAGACATGTCTGGGACATGCATCGGCCTCAAGATGAGAGCCAGTGT
* ** ** *
94751092 AAGACCATGTCTGGGACATGGCACCGGTATTGAGACGAGAGCCAGTGT
1 AAGA-CATGTCTGGGACAT-GCATCGGCCTCAAGATGAGAGCCAGTGT
*
94751140 AAGACATGTCTGGGACATGCATCAGCCTCAAGATGTA-AGCCAGTGT
1 AAGACATGTCTGGGACATGCATCGGCCTCAAGATG-AGAGCCAGTGT
94751186 AAGACATGT
1 AAGACATGT
94751195 GATACGTGAT
Statistics
Matches: 83, Mismatches: 17, Indels: 6
0.78 0.16 0.06
Matches are distributed among these distances:
46 32 0.39
47 29 0.35
48 22 0.27
ACGTcount: A:0.30, C:0.21, G:0.28, T:0.21
Consensus pattern (46 bp):
AAGACATGTCTGGGACATGCATCGGCCTCAAGATGAGAGCCAGTGT
Found at i:94754734 original size:39 final size:39
Alignment explanation
Indices: 94754595--94754732 Score: 179
Period size: 40 Copynumber: 3.5 Consensus size: 39
94754585 CGGATGATAA
94754595 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TACTATAT
* *
94754635 CCTGGCTAAGTCCCGAAGGCATTTGTGCGAGTCACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT-ACTATAT
* * * *
94754675 CCGGGCTAAGTCCCGAAGGTATTTGAGCAAGTAGCTATGT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTA-CTATAT
*
94754715 CC-GGCTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
94754733 TACTTGGTTG
Statistics
Matches: 87, Mismatches: 9, Indels: 5
0.86 0.09 0.05
Matches are distributed among these distances:
39 17 0.20
40 70 0.80
ACGTcount: A:0.25, C:0.24, G:0.28, T:0.24
Consensus pattern (39 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTACTATAT
Found at i:94760949 original size:37 final size:37
Alignment explanation
Indices: 94760907--94761006 Score: 91
Period size: 37 Copynumber: 2.6 Consensus size: 37
94760897 CTAATATTTT
94760907 CTTTTATTGTAGATATTATTATTATTATTAT-TACATA
1 CTTTTATT-TAGATATTATTATTATTATTATGTACATA
*
94760944 CTTTTATTATATGCATA-TATATATGTATTTTTATGTACATA
1 CTTTTATT-TA-G-ATATTAT-TAT-TATTATTATGTACATA
*
94760985 -TTATTATTT-TATATTATTATTA
1 CTT-TTATTTAGATATTATTATTA
94761007 CCAAATATAT
Statistics
Matches: 53, Mismatches: 3, Indels: 15
0.75 0.04 0.21
Matches are distributed among these distances:
36 2 0.04
37 16 0.30
38 7 0.13
39 6 0.11
40 11 0.21
41 11 0.21
ACGTcount: A:0.32, C:0.05, G:0.05, T:0.58
Consensus pattern (37 bp):
CTTTTATTTAGATATTATTATTATTATTATGTACATA
Found at i:94769596 original size:85 final size:85
Alignment explanation
Indices: 94769453--94770002 Score: 372
Period size: 73 Copynumber: 6.8 Consensus size: 85
94769443 TTAATTTTTG
* * ** * * *
94769453 TTTTTCAAAAATCAACTCATATTGCGAGACGTGAGCTGAGCCTCGGGGCACGCTGAGGT-ATTGT
1 TTTTTCAAAAATCAACTCATATTACAAGAAATGAGTTGAGCCTCAGGACACGCTGAGGTAATT-T
94769517 CAATTTTTGTGTTTCAATCTA
65 CAATTTTTGTGTTTCAATCTA
**
94769538 TTTTTCAAAAATTGACTCATATTACAAGAAATGAGTTGAGCCTCAGGACACGCTGAGGTAATTTC
1 TTTTTCAAAAATCAACTCATATTACAAGAAATGAGTTGAGCCTCAGGACACGCTGAGGTAATTTC
*
94769603 AA---------TT---TCTG
66 AATTTTTGTGTTTCAATCTA
* * ** * * *
94769611 TTTGTCAAAAATCAACTCATATTGCGAA-AGGTGAGTTGAGCCTCGGGGCATGCTGAGGT-ATTG
1 TTTTTCAAAAATCAACTCATATTAC-AAGAAATGAGTTGAGCCTCAGGACACGCTGAGGTAATT-
94769674 TCAATTTTTGTGTTTCAATCTA
64 TCAATTTTTGTGTTTCAATCTA
* *
94769696 TTTTTCAAAAATCAAGTCATATTACGAGAAATGAGTTGAGCCTCAGGACACGCTGAGGTAATTTC
1 TTTTTCAAAAATCAACTCATATTACAAGAAATGAGTTGAGCCTCAGGACACGCTGAGGTAATTTC
*
94769761 AA---------TT---TCTG
66 AATTTTTGTGTTTCAATCTA
* * * ** **
94769769 TTTGTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGG-CACATTGAGGTAATTT
1 TTTTTCAAAAATCAACTCATATTACAAGAAATGAGTTGAGCCTC-AGGACACGCTGAGGTAATTT
* *
94769833 CAATTTCTGCT-TTTCAATTTATA
65 CAATTTTTG-TGTTTCAA--TCTA
* **
94769856 TTTTTCAAAAAAATTCAACTCATATTACGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAAT
1 TTTTTC--AAAAA-TCAACTCATATTACAAGAAATGAGTTGAGCCTCAGGACACGCTGAGGTAAT
*
94769921 TTCAATTTCTGT-TGTT-AA---A
63 TTCAATTTTTGTGT-TTCAATCTA
* * * * *
94769940 ------AAAAATCAACTCATATTGCGAGAAA-AAGTTGAGCTTTAGGACACGCTGAGGTAATTTC
1 TTTTTCAAAAATCAACTCATATTACAAGAAATGAGTTGAGCCTCAGGACACGCTGAGGTAATTTC
94769998 AATTT
66 AATTT
94770003 CTGTTTTGAA
Statistics
Matches: 379, Mismatches: 49, Indels: 85
0.74 0.10 0.17
Matches are distributed among these distances:
72 3 0.01
73 113 0.30
74 40 0.11
75 17 0.04
76 9 0.02
82 4 0.01
84 2 0.01
85 109 0.29
86 6 0.02
87 7 0.02
89 12 0.03
90 57 0.15
ACGTcount: A:0.31, C:0.16, G:0.20, T:0.33
Consensus pattern (85 bp):
TTTTTCAAAAATCAACTCATATTACAAGAAATGAGTTGAGCCTCAGGACACGCTGAGGTAATTTC
AATTTTTGTGTTTCAATCTA
Found at i:94769674 original size:158 final size:157
Alignment explanation
Indices: 94769386--94770415 Score: 1082
Period size: 158 Copynumber: 6.7 Consensus size: 157
94769376 TGTTTTTCAA
* ** * * *
94769386 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTTAATTTT
1 AAAAATCAACTCATATTACGAGAAATGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTC
* * * *
94769451 TGTTTTTCAAAAATCAACTCATATTGCGAGACGTGAGCTGAGCCTCGGGGCACGCTGAGGT-ATT
66 TGTTTGTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTAATT
*
94769515 GTCAATTTTTGTGTTTCAATCTATTTTTC
131 -TCAATTTCTGT-TTTCAATCTATTTTTC
** *
94769544 AAAAATTGACTCATATTACAAGAAATGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTC
1 AAAAATCAACTCATATTACGAGAAATGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTC
* * *
94769609 TGTTTGTCAAAAATCAACTCATATTGCGAAAGGTGAGTTGAGCCTCGGGGCATGCTGAGGT-ATT
66 TGTTTGTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTAATT
*
94769673 GTCAATTTTTGTGTTTCAATCTATTTTTC
131 -TCAATTTCTGT-TTTCAATCTATTTTTC
*
94769702 AAAAATCAAGTCATATTACGAGAAATGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTC
1 AAAAATCAACTCATATTACGAGAAATGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTC
* **
94769767 TGTTTGTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGG-CACATTGAGGTAAT
66 TGTTTGTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-GGGACACGCTGAGGTAAT
*
94769831 TTCAATTTCTGCTTTTCAATTTATATTTTTC
130 TTCAATTTCTG-TTTTCAA--TCTATTTTTC
**
94769862 AAAAAAATTCAACTCATATTACGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAAT
1 --AAAAA-TCAACTCATATTACGAGAAATGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAAT
* *** * **
94769927 TTCTG-TTGTTAAAAAAAATCAACTCATATTGCGAGA-AAAAGTTGAGCTTTAGGACACGCTGAG
63 TTCTGTTTG-T--CAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAG
*
94769990 GTAATTTCAATTTCTG------------TTTTG
125 GTAATTTCAATTTCTGTTTTCAATCTATTTTTC
* * * * * *
94770011 AAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACATGCTGAGGTATTTTCAATTTT
1 AAAAATCAACTCATATTACGAGAAATGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTC
* *
94770076 TGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGAGACACGCTGAGGTAA
66 TGTTTGTC--AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTAA
94770141 TTTCAA--------TT---TCTA-TTTTC
129 TTTCAATTTCTGTTTTCAATCTATTTTTC
* * ** *
94770158 AAAAATCGACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTAATTTCAATTTC
1 AAAAATCAACTCATATTACGAGAAATGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTC
*
94770223 TGTTT-TCAAAAATCGACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTAATT
66 TGTTTGTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTAATT
94770287 TCAATTTCTGTTTTC-A---A------
131 TCAATTTCTGTTTTCAATCTATTTTTC
* * * ** * *
94770304 AAAAATCAAATTATATTGCGAGAGGTGAGTTGAGCCTC-GGTTCACATGCTGAGGTATTTTCAAT
1 AAAAATCAACTCATATTACGAGAAATGAGTTGAGCCTCAGG---ACACGCTGAGGTAATTTCAAT
94770368 TTCTGTCTT-TCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGC
63 TTCTGT-TTGTC--AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGC
94770416 TTCAAATCAC
Statistics
Matches: 762, Mismatches: 72, Indels: 83
0.83 0.08 0.09
Matches are distributed among these distances:
144 59 0.08
145 2 0.00
146 116 0.15
147 101 0.13
148 25 0.03
149 8 0.01
151 35 0.05
152 2 0.00
158 273 0.36
159 6 0.01
160 9 0.01
162 8 0.01
163 63 0.08
164 32 0.04
165 23 0.03
ACGTcount: A:0.30, C:0.16, G:0.21, T:0.33
Consensus pattern (157 bp):
AAAAATCAACTCATATTACGAGAAATGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTC
TGTTTGTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTAATT
TCAATTTCTGTTTTCAATCTATTTTTC
Found at i:94770070 original size:72 final size:73
Alignment explanation
Indices: 94769857--94770415 Score: 734
Period size: 72 Copynumber: 7.6 Consensus size: 73
94769847 CAATTTATAT
*
94769857 TTTTCAAAAAAATTCAACTCATATTACGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATT
1 TTTT-AAAAAAA-TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATT
94769922 TCAATTTCTG
64 TCAATTTCTG
*** * *
94769932 TTGTTAAAAAAAATCAACTCATATTGCGAGA-AAAAGTTGAGCTTTAGGACACGCTGAGGTAATT
1 TT-TT-AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATT
94769996 TCAATTTCTG
64 TCAATTTCTG
* * ** * * *
94770006 TTTT-GAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACATGCTGAGGTATTTTC
1 TTTTAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTC
*
94770070 AATTTTTG
66 AATTTCTG
94770078 TTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-GAGACACGCTGAGGTAAT
1 -TTTT-AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAG-GACACGCTGAGGTAAT
*
94770142 TTCAATTTCTA
63 TTCAATTTCTG
* * *
94770153 TTTT-CAAAAATCGACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTAATTTC
1 TTTTAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTC
94770217 AATTTCTG
66 AATTTCTG
* * *
94770225 TTTT-CAAAAATCGACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTAATTTC
1 TTTTAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTC
94770289 AATTTCTG
66 AATTTCTG
* * * *
94770297 TTTTCAAAAAAATCAAATTATATTGCGAGAGGTGAGTTGAGCCTC-GGTTCACATGCTGAGGTAT
1 TTTT-AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG---ACACGCTGAGGTAA
94770361 TTTCAATTTCTG
62 TTTCAATTTCTG
94770373 TCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGC
1 T-TTT-AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGC
94770416 TTCAAATCAC
Statistics
Matches: 434, Mismatches: 37, Indels: 24
0.88 0.07 0.05
Matches are distributed among these distances:
71 22 0.05
72 174 0.40
73 9 0.02
74 79 0.18
75 77 0.18
76 34 0.08
77 39 0.09
ACGTcount: A:0.31, C:0.16, G:0.21, T:0.32
Consensus pattern (73 bp):
TTTTAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTC
AATTTCTG
Found at i:94770261 original size:219 final size:219
Alignment explanation
Indices: 94769843--94770415 Score: 785
Period size: 219 Copynumber: 2.6 Consensus size: 219
94769833 CAATTTCTGC
* *
94769843 TTTTCAATTTATATTTTTCAAAAAAATTCAACTCATATTACGAGAGGTGAGTTGAGCCTC-AGGA
1 TTTTCAATTTATGTTTTTCAAAAAAA-TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGA-GA
* ***
94769907 CACGCTGAGGTAATTTCAATTTCTGTTGTTAAAAAAAATCAACTCATATTGCGAGA-AAAAGTTG
64 CACGCTGAGGTAATTTCAATTTCTGTT-TT--CAAAAATCAACTCATATTGCGAGAGGTGAGTTG
* * * *
94769971 AGCTTTAGGACACGCTGAGGTAATTTCAATTTCTGTTTTGAAAATTCAACTCATATTGCGAGAAA
126 AGCCTCAGGACACGCTGAGGTAATTTCAATTTCTGTTTTCAAAAATCAACTCATATTGCGAGAAA
*
94770036 TGAGTTGAGCCTCAAGACATGCTGAGGTA
191 TGAGTTGAGCCTCAAGACACGCTGAGGTA
*
94770065 TTTTCAATTTTTGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGAGACA
1 TTTTCAATTTATGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGAGACA
* *
94770130 CGCTGAGGTAATTTCAATTTCTATTTTCAAAAATCGACTCATATTGCGAGAGGTGAGTTGAGCCT
66 CGCTGAGGTAATTTCAATTTCTGTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT
* * **
94770195 CGGGACACGCTGAGGTAATTTCAATTTCTGTTTTCAAAAATCGACTCATATTGCGAGAGGTGAGT
131 CAGGACACGCTGAGGTAATTTCAATTTCTGTTTTCAAAAATCAACTCATATTGCGAGAAATGAGT
**
94770260 TGAGCCTCGGGACACGCTGAGGTA
196 TGAGCCTCAAGACACGCTGAGGTA
* * * *
94770284 ATTTCAATTTCTG-TTTTCAAAAAAATCAAATTATATTGCGAGAGGTGAGTTGAGCCTCG-GTTC
1 TTTTCAATTTATGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGAG---
* *
94770347 ACATGCTGAGGTATTTTCAATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTT
63 ACACGCTGAGGTAATTTCAATTTCTGT-TTTC--AAAAATCAACTCATATTGCGAGAGGTGAGTT
94770412 GAGC
125 GAGC
94770416 TTCAAATCAC
Statistics
Matches: 315, Mismatches: 28, Indels: 15
0.88 0.08 0.04
Matches are distributed among these distances:
217 1 0.00
218 66 0.21
219 99 0.31
220 26 0.08
221 64 0.20
222 25 0.08
223 34 0.11
ACGTcount: A:0.31, C:0.16, G:0.21, T:0.33
Consensus pattern (219 bp):
TTTTCAATTTATGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGAGACA
CGCTGAGGTAATTTCAATTTCTGTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT
CAGGACACGCTGAGGTAATTTCAATTTCTGTTTTCAAAAATCAACTCATATTGCGAGAAATGAGT
TGAGCCTCAAGACACGCTGAGGTA
Found at i:94776990 original size:48 final size:46
Alignment explanation
Indices: 94776898--94777109 Score: 182
Period size: 48 Copynumber: 4.4 Consensus size: 46
94776888 GGTTTATCAA
*
94776898 CATGTCTGGGACAT-GCATCGG-CTATGAGATGTGTCAGTGTAAGAC
1 CATGTCTGGGACATGGCATCGGCCTAT-AGAGGTGTCAGTGTAAGAC
*
94776943 CATGTCTGGGACATGGCATTGGCACGTATAGAGGTGTCAGTGTAAGAC
1 CATGTCTGGGACATGGCATCGGC-C-TATAGAGGTGTCAGTGTAAGAC
* *
94776991 CATGTCTGGGACATGGCATCGGAACGGATATATGA-GT-TCTAGTGTGAGAC
1 CATGTCTGGGACATGGCATCGG--C--CTATA-GAGGTGTC-AGTGTAAGAC
** *** *
94777041 CATGTCTGGGACATGGTGTTC-GCCTCAATTTCGATAGTCAGTGTAAGAC
1 CATGTCTGGGACATGG-CATCGGCCT--ATAGAGGT-GTCAGTGTAAGAC
94777090 CATGTCTGGGACATGGCATC
1 CATGTCTGGGACATGGCATC
94777110 AACTTGATGG
Statistics
Matches: 136, Mismatches: 16, Indels: 27
0.76 0.09 0.15
Matches are distributed among these distances:
45 14 0.10
46 7 0.05
48 46 0.34
49 30 0.22
50 35 0.26
51 4 0.03
ACGTcount: A:0.24, C:0.18, G:0.31, T:0.27
Consensus pattern (46 bp):
CATGTCTGGGACATGGCATCGGCCTATAGAGGTGTCAGTGTAAGAC
Found at i:94777056 original size:50 final size:48
Alignment explanation
Indices: 94776898--94777056 Score: 195
Period size: 48 Copynumber: 3.3 Consensus size: 48
94776888 GGTTTATCAA
*
94776898 CATGTCTGGGACAT-GCATCGG--C-TATGAGATGTGTCAGTGTAAGAC
1 CATGTCTGGGACATGGCATCGGAACGTAT-AGAGGTGTCAGTGTAAGAC
* *
94776943 CATGTCTGGGACATGGCATTGGCACGTATAGAGGTGTCAGTGTAAGAC
1 CATGTCTGGGACATGGCATCGGAACGTATAGAGGTGTCAGTGTAAGAC
*
94776991 CATGTCTGGGACATGGCATCGGAACGGATATATGA-GT-TCTAGTGTGAGAC
1 CATGTCTGGGACATGGCATCGGAAC-G-TATA-GAGGTGTC-AGTGTAAGAC
94777041 CATGTCTGGGACATGG
1 CATGTCTGGGACATGG
94777057 TGTTCGCCTC
Statistics
Matches: 101, Mismatches: 5, Indels: 11
0.86 0.04 0.09
Matches are distributed among these distances:
45 14 0.14
46 6 0.06
48 42 0.42
49 6 0.06
50 31 0.31
51 2 0.02
ACGTcount: A:0.25, C:0.17, G:0.33, T:0.26
Consensus pattern (48 bp):
CATGTCTGGGACATGGCATCGGAACGTATAGAGGTGTCAGTGTAAGAC
Found at i:94784723 original size:50 final size:48
Alignment explanation
Indices: 94784601--94784727 Score: 152
Period size: 48 Copynumber: 2.6 Consensus size: 48
94784591 AGGAAATGTT
*
94784601 TCAGTGTAAGACCAT-TATTGGGACATGGCATCGGCACGTATAGAGGTG
1 TCAGTGTAAGACCATGTA-TGGGACATGGCATCGGCACGTATAGAGGTC
* *
94784649 TCAGTGTAAGACCATGTTTGGGACATGGCATCGGCACAGATATGTGAGAG-C
1 TCAGTGTAAGACCATGTATGGGACATGGCATCGGCAC-G-TAT-AGAG-GTC
*
94784700 T-AGTGTAAGACCATGTATAGGACATGGC
1 TCAGTGTAAGACCATGTATGGGACATGGC
94784728 GTCAACCTCG
Statistics
Matches: 69, Mismatches: 5, Indels: 8
0.84 0.06 0.10
Matches are distributed among these distances:
48 34 0.49
49 2 0.03
50 28 0.41
51 4 0.06
52 1 0.01
ACGTcount: A:0.28, C:0.17, G:0.31, T:0.24
Consensus pattern (48 bp):
TCAGTGTAAGACCATGTATGGGACATGGCATCGGCACGTATAGAGGTC
Found at i:94784825 original size:48 final size:49
Alignment explanation
Indices: 94784648--94784874 Score: 225
Period size: 49 Copynumber: 4.7 Consensus size: 49
94784638 GTATAGAGGT
* ** * *
94784648 GTCAGTGTAAGACCATGTTTGGGACATGGCATCGGCAC-AGATATGT-GAGA
1 GTCAGTGTAAGACCATGTCTGGGACATGGCATCAAC-CTCGAT-T-TCGATA
* * * *
94784698 G-CTAGTGTAAGACCATGTATAGGACATGGCGTCAACCTCGATTTCGGTA
1 GTC-AGTGTAAGACCATGTCTGGGACATGGCATCAACCTCGATTTCGATA
94784747 GTCAGTGTAAGACCATGTCTGGGACATGGCATCAACCTCGATTTCGATA
1 GTCAGTGTAAGACCATGTCTGGGACATGGCATCAACCTCGATTTCGATA
* * *
94784796 GTCAGT-TAAGACCATGTCTGGGACATGGCATCGA-CTTGA--TGGATGA
1 GTCAGTGTAAGACCATGTCTGGGACATGGCATCAACCTCGATTTCGAT-A
* * *
94784842 GCCAGTGTAAGACCATGTCTTGGATATGGCATC
1 GTCAGTGTAAGACCATGTCTGGGACATGGCATC
94784875 GGCATTATAC
Statistics
Matches: 153, Mismatches: 18, Indels: 15
0.82 0.10 0.08
Matches are distributed among these distances:
45 4 0.03
46 6 0.04
47 28 0.18
48 28 0.18
49 54 0.35
50 33 0.22
ACGTcount: A:0.26, C:0.19, G:0.28, T:0.26
Consensus pattern (49 bp):
GTCAGTGTAAGACCATGTCTGGGACATGGCATCAACCTCGATTTCGATA
Found at i:94786393 original size:37 final size:37
Alignment explanation
Indices: 94786333--94786440 Score: 135
Period size: 37 Copynumber: 2.9 Consensus size: 37
94786323 TAGCTCGAAT
* * * * *
94786333 AATCCCCACTCGTAGTTAGCGGGTCTCACCCGGACAA
1 AATCACCACACGTAGTCATCGGGTCTTACCCGGACAA
* * *
94786370 AATCTCCACACGTAGTCATCGGGTCTTACCCAGACAT
1 AATCACCACACGTAGTCATCGGGTCTTACCCGGACAA
*
94786407 AATCACCACACGTAGTCATCGAGTCTTACCCGGA
1 AATCACCACACGTAGTCATCGGGTCTTACCCGGA
94786441 ATATATTTCC
Statistics
Matches: 61, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
37 61 1.00
ACGTcount: A:0.27, C:0.33, G:0.19, T:0.21
Consensus pattern (37 bp):
AATCACCACACGTAGTCATCGGGTCTTACCCGGACAA
Found at i:94786639 original size:48 final size:48
Alignment explanation
Indices: 94786581--94786870 Score: 492
Period size: 48 Copynumber: 6.0 Consensus size: 48
94786571 ATATACACAC
* * *
94786581 ATCTCCTACATATTTCACATTAGCCATTCGGCTTTACCAAATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
94786629 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
94786677 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
*
94786725 ATCTCATACATATTTCACACTAGCCATTCGGCCTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
* * *
94786773 ATCTCATATATATTTCAC-CTTAGCCATACGGCTTTACCACATATATAT
1 ATCTCATACATATTTCACAC-TAGCCATTCGGCTTTACCACATATACAT
*
94786821 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATATAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
94786869 AT
1 AT
94786871 TTGTCTTGTA
Statistics
Matches: 230, Mismatches: 10, Indels: 4
0.94 0.04 0.02
Matches are distributed among these distances:
47 1 0.00
48 228 0.99
49 1 0.00
ACGTcount: A:0.31, C:0.28, G:0.06, T:0.34
Consensus pattern (48 bp):
ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
Found at i:94790182 original size:29 final size:30
Alignment explanation
Indices: 94790149--94790206 Score: 100
Period size: 29 Copynumber: 2.0 Consensus size: 30
94790139 TATTTTATTA
94790149 TTAATTTTGTTATTATTTTA-AGGCATTTG
1 TTAATTTTGTTATTATTTTAGAGGCATTTG
*
94790178 TTAATTTTTTTATTATTTTAGAGGCATTT
1 TTAATTTTGTTATTATTTTAGAGGCATTT
94790207 TCTTGTTAAG
Statistics
Matches: 27, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
29 19 0.70
30 8 0.30
ACGTcount: A:0.24, C:0.03, G:0.12, T:0.60
Consensus pattern (30 bp):
TTAATTTTGTTATTATTTTAGAGGCATTTG
Found at i:94792020 original size:19 final size:19
Alignment explanation
Indices: 94791996--94792034 Score: 78
Period size: 19 Copynumber: 2.1 Consensus size: 19
94791986 GATATGGTTG
94791996 ACTATATGTGTGATATGAC
1 ACTATATGTGTGATATGAC
94792015 ACTATATGTGTGATATGAC
1 ACTATATGTGTGATATGAC
94792034 A
1 A
94792035 TACTTCCTAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.33, C:0.10, G:0.21, T:0.36
Consensus pattern (19 bp):
ACTATATGTGTGATATGAC
Found at i:94794676 original size:13 final size:13
Alignment explanation
Indices: 94794660--94794685 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
94794650 AGAATAATTT
94794660 TTTGAAAATTTCG
1 TTTGAAAATTTCG
94794673 TTTGAAAATTTCG
1 TTTGAAAATTTCG
94794686 ATGTCTGGGC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.08, G:0.15, T:0.46
Consensus pattern (13 bp):
TTTGAAAATTTCG
Found at i:94797399 original size:37 final size:37
Alignment explanation
Indices: 94797348--94797423 Score: 95
Period size: 37 Copynumber: 2.1 Consensus size: 37
94797338 ATGATCGATG
*
94797348 TTGTTGTGATTAGCCAAATG-TAT-TGGCTTATAATGAT
1 TTGTTGTGATTAGCC--ATGAGATGTGGCTTATAATGAT
94797385 TTGTTGT-ATGTAGCCATGAGATGTGGCTTATAATGAT
1 TTGTTGTGAT-TAGCCATGAGATGTGGCTTATAATGAT
94797422 TT
1 TT
94797424 TGGCTTGTAA
Statistics
Matches: 35, Mismatches: 1, Indels: 6
0.83 0.02 0.14
Matches are distributed among these distances:
35 3 0.09
36 4 0.11
37 28 0.80
ACGTcount: A:0.25, C:0.08, G:0.24, T:0.43
Consensus pattern (37 bp):
TTGTTGTGATTAGCCATGAGATGTGGCTTATAATGAT
Found at i:94803497 original size:60 final size:60
Alignment explanation
Indices: 94803409--94803548 Score: 169
Period size: 60 Copynumber: 2.3 Consensus size: 60
94803399 CAGATTTAAC
* * *
94803409 TGGGCCTTAGCCCATATCAATATTAATCTGGGCCATAGCCC-CTTAC-AGTATC-AGAGTATAT
1 TGGGCC-TAGCCCATATTAATATCAATCTGGGCCATAGCCCTATTACAAG--TCGAGA-TATAT
* *
94803470 TGGGCCTAGCCCATATTAGTATCAATCTGGGCCGTAGCCCTATTACAAGTCGAGATATAT
1 TGGGCCTAGCCCATATTAATATCAATCTGGGCCATAGCCCTATTACAAGTCGAGATATAT
*
94803530 TGGGCCTTGCCCATATTAA
1 TGGGCCTAGCCCATATTAA
94803549 CATAGTTGGC
Statistics
Matches: 69, Mismatches: 7, Indels: 7
0.83 0.08 0.08
Matches are distributed among these distances:
60 54 0.78
61 13 0.19
62 2 0.03
ACGTcount: A:0.26, C:0.24, G:0.20, T:0.29
Consensus pattern (60 bp):
TGGGCCTAGCCCATATTAATATCAATCTGGGCCATAGCCCTATTACAAGTCGAGATATAT
Found at i:94807360 original size:37 final size:37
Alignment explanation
Indices: 94807309--94807384 Score: 95
Period size: 37 Copynumber: 2.1 Consensus size: 37
94807299 ATGATCGATG
*
94807309 TTGTTGTGATTAGCCAAATG-TAT-TGGCTTATAATGAT
1 TTGTTGTGATTAGCC--ATGAGATGTGGCTTATAATGAT
94807346 TTGTTGT-ATGTAGCCATGAGATGTGGCTTATAATGAT
1 TTGTTGTGAT-TAGCCATGAGATGTGGCTTATAATGAT
94807383 TT
1 TT
94807385 TGGCTTGTAA
Statistics
Matches: 35, Mismatches: 1, Indels: 6
0.83 0.02 0.14
Matches are distributed among these distances:
35 3 0.09
36 4 0.11
37 28 0.80
ACGTcount: A:0.25, C:0.08, G:0.24, T:0.43
Consensus pattern (37 bp):
TTGTTGTGATTAGCCATGAGATGTGGCTTATAATGAT
Found at i:94808550 original size:38 final size:38
Alignment explanation
Indices: 94808499--94808575 Score: 145
Period size: 38 Copynumber: 2.0 Consensus size: 38
94808489 GAATTAAATG
94808499 TCAATATGTTATATTATATTTAGACTCAAACTTAGCTT
1 TCAATATGTTATATTATATTTAGACTCAAACTTAGCTT
*
94808537 TCAATATGTTATATTATATTTAGACTCACACTTAGCTT
1 TCAATATGTTATATTATATTTAGACTCAAACTTAGCTT
94808575 T
1 T
94808576 TTTAGGCTCA
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
38 38 1.00
ACGTcount: A:0.32, C:0.14, G:0.08, T:0.45
Consensus pattern (38 bp):
TCAATATGTTATATTATATTTAGACTCAAACTTAGCTT
Found at i:94813103 original size:7 final size:8
Alignment explanation
Indices: 94813088--94813154 Score: 67
Period size: 7 Copynumber: 9.1 Consensus size: 8
94813078 AATGATGAAT
94813088 GATGA-GG
1 GATGAGGG
94813095 GAT-AGGG
1 GATGAGGG
94813102 GATGA-GG
1 GATGAGGG
94813109 GATGA-GG
1 GATGAGGG
94813116 GATGA-GG
1 GATGAGGG
94813123 GATGA-GG
1 GATGAGGG
94813130 GATGA-GG
1 GATGAGGG
94813137 GATGAGGG
1 GATGAGGG
*
94813145 AATGAAGGG
1 GATG-AGGG
94813154 G
1 G
94813155 TCATATTTAT
Statistics
Matches: 54, Mismatches: 2, Indels: 6
0.87 0.03 0.10
Matches are distributed among these distances:
6 1 0.02
7 43 0.80
8 6 0.11
9 4 0.07
ACGTcount: A:0.30, C:0.00, G:0.57, T:0.13
Consensus pattern (8 bp):
GATGAGGG
Found at i:94813107 original size:14 final size:14
Alignment explanation
Indices: 94813088--94813145 Score: 100
Period size: 14 Copynumber: 4.1 Consensus size: 14
94813078 AATGATGAAT
94813088 GATGAGGGAT-AGGG
1 GATGAGGGATGA-GG
94813102 GATGAGGGATGAGG
1 GATGAGGGATGAGG
94813116 GATGAGGGATGAGG
1 GATGAGGGATGAGG
94813130 GATGAGGGATGAGG
1 GATGAGGGATGAGG
94813144 GA
1 GA
94813146 ATGAAGGGGT
Statistics
Matches: 43, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
14 42 0.98
15 1 0.02
ACGTcount: A:0.29, C:0.00, G:0.57, T:0.14
Consensus pattern (14 bp):
GATGAGGGATGAGG
Found at i:94813112 original size:21 final size:21
Alignment explanation
Indices: 94813088--94813149 Score: 90
Period size: 21 Copynumber: 2.9 Consensus size: 21
94813078 AATGATGAAT
94813088 GATGAGGGATAGGGGATGAGG
1 GATGAGGGATAGGGGATGAGG
94813109 GATGAGGGAT-GAGGGATGAGG
1 GATGAGGGATAG-GGGATGAGG
*
94813130 GATGAGGGATGAGGGAATGA
1 GATGAGGGAT-AGGGGATGA
94813150 AGGGGTCATA
Statistics
Matches: 37, Mismatches: 1, Indels: 5
0.86 0.02 0.12
Matches are distributed among these distances:
20 1 0.03
21 29 0.78
22 6 0.16
23 1 0.03
ACGTcount: A:0.31, C:0.00, G:0.55, T:0.15
Consensus pattern (21 bp):
GATGAGGGATAGGGGATGAGG
Found at i:94828251 original size:20 final size:20
Alignment explanation
Indices: 94828220--94828269 Score: 66
Period size: 20 Copynumber: 2.5 Consensus size: 20
94828210 ATTTGCTACA
*
94828220 TGATTT-GTTGTTGTTTGAT
1 TGATTTAGTTGTTGTTAGAT
*
94828239 TGATTTAGTTGTTGTTAGCT
1 TGATTTAGTTGTTGTTAGAT
*
94828259 TAATTTAGTTG
1 TGATTTAGTTG
94828270 CTACAGCAAC
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
19 6 0.22
20 21 0.78
ACGTcount: A:0.16, C:0.02, G:0.24, T:0.58
Consensus pattern (20 bp):
TGATTTAGTTGTTGTTAGAT
Found at i:94828927 original size:20 final size:22
Alignment explanation
Indices: 94828902--94828942 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 22
94828892 TAATATTAAA
94828902 TATTTA-TTTTTTTCC-TTTTT
1 TATTTACTTTTTTTCCATTTTT
94828922 TATTTACTTTTTTTCCATTTT
1 TATTTACTTTTTTTCCATTTT
94828943 CCCCTCTCTT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 6 0.32
21 9 0.47
22 4 0.21
ACGTcount: A:0.12, C:0.12, G:0.00, T:0.76
Consensus pattern (22 bp):
TATTTACTTTTTTTCCATTTTT
Found at i:94832312 original size:20 final size:20
Alignment explanation
Indices: 94832253--94832313 Score: 70
Period size: 20 Copynumber: 3.0 Consensus size: 20
94832243 AGATGGGTAA
*
94832253 CAGAGGCACCGAAGTGCAAA
1 CAGAGGCACCGAAGTGCAAT
* *
94832273 CAGAGGTA-CAAATGTGCAAT
1 CAGAGGCACCGAA-GTGCAAT
*
94832293 CATAGGCACCGAAGTGCAAT
1 CAGAGGCACCGAAGTGCAAT
94832313 C
1 C
94832314 CCATACAAGC
Statistics
Matches: 33, Mismatches: 6, Indels: 4
0.77 0.14 0.09
Matches are distributed among these distances:
19 3 0.09
20 27 0.82
21 3 0.09
ACGTcount: A:0.38, C:0.23, G:0.26, T:0.13
Consensus pattern (20 bp):
CAGAGGCACCGAAGTGCAAT
Found at i:94834087 original size:26 final size:26
Alignment explanation
Indices: 94834027--94834090 Score: 83
Period size: 27 Copynumber: 2.4 Consensus size: 26
94834017 AACAATTTTC
* *
94834027 TCAAAATTTTACCAGGGGTAAAATCG
1 TCAAAATTTTAACAGGGGTAAAATCA
* *
94834053 TTAAGAATTTTAACAGGGTTAAAATCA
1 TCAA-AATTTTAACAGGGGTAAAATCA
94834080 TCAAAATTTTA
1 TCAAAATTTTA
94834091 TTAGGGTAAA
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
26 10 0.31
27 22 0.69
ACGTcount: A:0.42, C:0.11, G:0.14, T:0.33
Consensus pattern (26 bp):
TCAAAATTTTAACAGGGGTAAAATCA
Found at i:94834096 original size:26 final size:25
Alignment explanation
Indices: 94834027--94834102 Score: 80
Period size: 27 Copynumber: 2.9 Consensus size: 25
94834017 AACAATTTTC
* *
94834027 TCAAAATTTTACCAGGGGTAAAATCG
1 TCAAAATTTTAACA-GGGTAAAATCA
*
94834053 TTAAGAATTTTAACAGGGTTAAAATCA
1 TCAA-AATTTTAACAGGG-TAAAATCA
**
94834080 TCAAAATTTTATTAGGGTAAAAT
1 TCAAAATTTTAACAGGGTAAAAT
94834103 AGGGATAAGA
Statistics
Matches: 42, Mismatches: 6, Indels: 5
0.79 0.11 0.09
Matches are distributed among these distances:
25 6 0.14
26 17 0.40
27 19 0.45
ACGTcount: A:0.42, C:0.09, G:0.16, T:0.33
Consensus pattern (25 bp):
TCAAAATTTTAACAGGGTAAAATCA
Found at i:94836770 original size:13 final size:13
Alignment explanation
Indices: 94836746--94836786 Score: 64
Period size: 13 Copynumber: 3.2 Consensus size: 13
94836736 GAGTTCTTAC
*
94836746 TAGATCTGTCAAT
1 TAGATCTATCAAT
*
94836759 TAGATTTATCAAT
1 TAGATCTATCAAT
94836772 TAGATCTATCAAT
1 TAGATCTATCAAT
94836785 TA
1 TA
94836787 TTATTCTTTT
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
13 25 1.00
ACGTcount: A:0.37, C:0.12, G:0.10, T:0.41
Consensus pattern (13 bp):
TAGATCTATCAAT
Done.