Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A06
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 115140250
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2234201 characters in sequence are not A, C, G, or T
File 278 of 345
Found at i:94839252 original size:110 final size:111
Alignment explanation
Indices: 94839067--94839503 Score: 569
Period size: 110 Copynumber: 4.0 Consensus size: 111
94839057 TATACATAAT
* ** * *
94839067 TTCATGTATCGTGATATGTCATTTTGATTCATACACTACCGAAGGCTACACCATGAATATAAATA
1 TTCATGTATCGTGATCTACCATTTCGATTCATACACTATCGAAGGCTACACCATGAATATAAATA
* * * * * *
94839132 TAGACATATCATACT-ATGTGCCTTAACCACATGATCTTACATACA
66 CAAACATATCATACTCATGGGTCTTAACCACATGGTCTTACACACA
94839177 TTCATGTATCGTGATCTACCATTTCGATTCATACACTATCGAAGGCTACACCATGAATATAAATA
1 TTCATGTATCGTGATCTACCATTTCGATTCATACACTATCGAAGGCTACACCATGAATATAAATA
* * *
94839242 CAGACATATCAT-GTCATGGGTTTTAACCACATGGTCTTACACACA
66 CAAACATATCATACTCATGGGTCTTAACCACATGGTCTTACACACA
* * * *
94839287 TTCATGTATCGTAATCTTCCATTTCGATTCATACACTATCGAAGGATACAACATGAATATAAATA
1 TTCATGTATCGTGATCTACCATTTCGATTCATACACTATCGAAGGCTACACCATGAATATAAATA
* * *
94839352 CAAAAATATC--ACGTCATGGGTATTAACCATATGGTCTTACACACA
66 CAAACATATCATAC-TCATGGGTCTTAACCACATGGTCTTACACACA
* * * * *
94839397 TTTATGTATTGTGATCTACTATTTCAATTCATACACTATCGAAGGCTACACTATGAATATAAATA
1 TTCATGTATCGTGATCTACCATTTCGATTCATACACTATCGAAGGCTACACCATGAATATAAATA
* * *
94839462 CAAACACATCATGC-CATAGGTCTTAACCACATGGTCTTACAC
66 CAAACATATCATACTCATGGGTCTTAACCACATGGTCTTACAC
94839504 TTGTTTTCAT
Statistics
Matches: 286, Mismatches: 36, Indels: 10
0.86 0.11 0.03
Matches are distributed among these distances:
109 1 0.00
110 284 0.99
112 1 0.00
ACGTcount: A:0.35, C:0.21, G:0.12, T:0.32
Consensus pattern (111 bp):
TTCATGTATCGTGATCTACCATTTCGATTCATACACTATCGAAGGCTACACCATGAATATAAATA
CAAACATATCATACTCATGGGTCTTAACCACATGGTCTTACACACA
Found at i:94842339 original size:47 final size:47
Alignment explanation
Indices: 94842288--94842770 Score: 696
Period size: 47 Copynumber: 10.1 Consensus size: 47
94842278 TTAGGATTTT
* *
94842288 ATGTGATGGATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
* *
94842335 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGTCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
* * *
94842382 ATGTGATGGATGTGAACATGCATATGTGTGATAATGCCGAGTGGCCA
1 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
**
94842429 ATGTGATGAATGTGAACCCGTATATATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAA--C--ATGCATATGTGTGATAAGGCCGAATGGCCA
*
94842480 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
**
94842527 ATGTGATGAATGTGAACCTGTATATATATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAA-C-----ATGCATATGTGTGATAAGGCCGAATGGCCA
*
94842580 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
*
94842627 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
* *
94842674 ATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
* * * *
94842721 ATGTGATGAATGTGAACATGAATATATGTGGTAAGGCCGAATGGCTA
1 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
94842768 ATG
1 ATG
94842771 CGAAACGTGT
Statistics
Matches: 398, Mismatches: 28, Indels: 20
0.89 0.06 0.04
Matches are distributed among these distances:
47 309 0.78
48 1 0.00
49 2 0.01
51 42 0.11
52 1 0.00
53 43 0.11
ACGTcount: A:0.31, C:0.12, G:0.30, T:0.27
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
Found at i:94842484 original size:24 final size:24
Alignment explanation
Indices: 94842456--94842531 Score: 61
Period size: 24 Copynumber: 3.2 Consensus size: 24
94842446 CCGTATATAT
94842456 ATGTGTGATAAGGCCGAATGGCCA
1 ATGTGTGATAAGGCCGAATGGCCA
* * **
94842480 ATGTGATGA-ATGTG--AACAT-GCGT
1 ATGTG-TGATAAG-GCCGA-ATGGCCA
94842503 ATGTGTGATAAGGCCGAATGGCCA
1 ATGTGTGATAAGGCCGAATGGCCA
94842527 ATGTG
1 ATGTG
94842532 ATGAATGTGA
Statistics
Matches: 37, Mismatches: 8, Indels: 14
0.63 0.14 0.24
Matches are distributed among these distances:
22 4 0.11
23 12 0.32
24 17 0.46
25 4 0.11
ACGTcount: A:0.29, C:0.13, G:0.33, T:0.25
Consensus pattern (24 bp):
ATGTGTGATAAGGCCGAATGGCCA
Found at i:94842810 original size:46 final size:46
Alignment explanation
Indices: 94842744--94842834 Score: 119
Period size: 46 Copynumber: 2.0 Consensus size: 46
94842734 GAACATGAAT
* * *
94842744 ATATGTGGTAAGGCCGAATGGCTAATGCGAAACGTGTATGAGATGG
1 ATATGTGGTAAAGCCAAATGGCTAATGCGAAACATGTATGAGATGG
* * * *
94842790 ATATGTGGTAAAGTCAAATGGCTAATGTGAGATATGTATGAGATG
1 ATATGTGGTAAAGCCAAATGGCTAATGCGAAACATGTATGAGATG
94842835 TGTATATATA
Statistics
Matches: 38, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
46 38 1.00
ACGTcount: A:0.33, C:0.08, G:0.32, T:0.27
Consensus pattern (46 bp):
ATATGTGGTAAAGCCAAATGGCTAATGCGAAACATGTATGAGATGG
Found at i:94843060 original size:37 final size:36
Alignment explanation
Indices: 94842976--94843120 Score: 245
Period size: 37 Copynumber: 4.0 Consensus size: 36
94842966 GGAAATATAT
94842976 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTG
94843012 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATT-TG
94843049 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGA-TTTG
* * *
94843086 TCCGGGTAAGACCCGATAACTTCATGTGGAGATTT
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTT
94843121 CGTCTGAGCT
Statistics
Matches: 104, Mismatches: 3, Indels: 4
0.94 0.03 0.04
Matches are distributed among these distances:
36 37 0.36
37 65 0.62
38 2 0.02
ACGTcount: A:0.23, C:0.19, G:0.31, T:0.26
Consensus pattern (36 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTG
Found at i:94844656 original size:40 final size:40
Alignment explanation
Indices: 94844373--94844644 Score: 454
Period size: 40 Copynumber: 6.8 Consensus size: 40
94844363 GAGAATTGAG
* * *
94844373 AGTGATATATCTGGGCTAAGTCCCGAAGAGCACTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
* *
94844413 AGTGATATATCCGGGCTAAGTCCCAAGAAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
94844453 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
94844493 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
94844533 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
*
94844573 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTCCT
1 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
* * * *
94844613 GGTGTTATATCCGGGCTAGGTCCCGAAGAGCA
1 AGTGATATATCCGGGCTAAGTCCCGAGGAGCA
94844645 ATCATGCTGG
Statistics
Matches: 220, Mismatches: 12, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
40 220 1.00
ACGTcount: A:0.24, C:0.23, G:0.29, T:0.25
Consensus pattern (40 bp):
AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
Found at i:94844861 original size:25 final size:25
Alignment explanation
Indices: 94844820--94844871 Score: 70
Period size: 25 Copynumber: 2.1 Consensus size: 25
94844810 TGTGTATTAA
94844820 TGAATGAATAAGAGCACTATGTGTG
1 TGAATGAATAAGAGCACTATGTGTG
* *
94844845 TGAATG-ATTAGAGGCACTGTGTGTG
1 TGAATGAATAAGA-GCACTATGTGTG
94844870 TG
1 TG
94844872 CGAATTCCTT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
24 5 0.21
25 19 0.79
ACGTcount: A:0.29, C:0.08, G:0.33, T:0.31
Consensus pattern (25 bp):
TGAATGAATAAGAGCACTATGTGTG
Found at i:94849268 original size:16 final size:17
Alignment explanation
Indices: 94849242--94849278 Score: 51
Period size: 16 Copynumber: 2.2 Consensus size: 17
94849232 ATAGAGACAC
94849242 AAAAATAAAAT-ATAAGA
1 AAAAATAAAATCA-AAGA
94849259 AAAAAT-AAATCAAAGA
1 AAAAATAAAATCAAAGA
94849275 AAAA
1 AAAA
94849279 CAAAAATACT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
16 12 0.63
17 7 0.37
ACGTcount: A:0.78, C:0.03, G:0.05, T:0.14
Consensus pattern (17 bp):
AAAAATAAAATCAAAGA
Found at i:94853969 original size:40 final size:42
Alignment explanation
Indices: 94853925--94854023 Score: 121
Period size: 40 Copynumber: 2.4 Consensus size: 42
94853915 TCAGTATACG
94853925 ACACATAAAGTGCCTAAAACGACACACGAGGTGCCTG-AAT-
1 ACACATAAAGTGCCTAAAACGACACACGAGGTGCCTGAAATA
** * * *
94853965 ACACACGAGGTGCCTGATACGACACACGAGGTGCCTGAAATA
1 ACACATAAAGTGCCTAAAACGACACACGAGGTGCCTGAAATA
94854007 CGACACATAAAGTGCCT
1 --ACACATAAAGTGCCT
94854024 GATCGTAAAG
Statistics
Matches: 47, Mismatches: 8, Indels: 4
0.80 0.14 0.07
Matches are distributed among these distances:
40 32 0.68
41 3 0.06
44 12 0.26
ACGTcount: A:0.36, C:0.26, G:0.22, T:0.15
Consensus pattern (42 bp):
ACACATAAAGTGCCTAAAACGACACACGAGGTGCCTGAAATA
Found at i:94853970 original size:19 final size:20
Alignment explanation
Indices: 94853942--94854003 Score: 99
Period size: 19 Copynumber: 3.1 Consensus size: 20
94853932 AAGTGCCTAA
94853942 AACGACACACGAGGTGCCTG
1 AACGACACACGAGGTGCCTG
*
94853962 AA-TACACACGAGGTGCCTG
1 AACGACACACGAGGTGCCTG
94853981 ATACGACACACGAGGTGCCTG
1 A-ACGACACACGAGGTGCCTG
94854002 AA
1 AA
94854004 ATACGACACA
Statistics
Matches: 38, Mismatches: 2, Indels: 4
0.86 0.05 0.09
Matches are distributed among these distances:
19 17 0.45
20 4 0.11
21 17 0.45
ACGTcount: A:0.32, C:0.27, G:0.27, T:0.13
Consensus pattern (20 bp):
AACGACACACGAGGTGCCTG
Found at i:94854025 original size:23 final size:23
Alignment explanation
Indices: 94853920--94854013 Score: 105
Period size: 21 Copynumber: 4.4 Consensus size: 23
94853910 CCTGATCAGT
** *
94853920 ATACGACACATAAAGTGCCT-AA
1 ATACGACACACGAGGTGCCTGAA
94853942 A-ACGACACACGAGGTGCCTG-A
1 ATACGACACACGAGGTGCCTGAA
94853963 AT---ACACACGAGGTGCCTG--
1 ATACGACACACGAGGTGCCTGAA
94853981 ATACGACACACGAGGTGCCTGAA
1 ATACGACACACGAGGTGCCTGAA
94854004 ATACGACACA
1 ATACGACACA
94854014 TAAAGTGCCT
Statistics
Matches: 62, Mismatches: 3, Indels: 13
0.79 0.04 0.17
Matches are distributed among these distances:
18 2 0.03
19 16 0.26
21 33 0.53
22 1 0.02
23 10 0.16
ACGTcount: A:0.37, C:0.27, G:0.22, T:0.14
Consensus pattern (23 bp):
ATACGACACACGAGGTGCCTGAA
Found at i:94855487 original size:16 final size:17
Alignment explanation
Indices: 94855452--94855487 Score: 51
Period size: 15 Copynumber: 2.3 Consensus size: 17
94855442 CCTAATTCTC
94855452 CCTT-TTTCTTTTCTTT
1 CCTTCTTTCTTTTCTTT
94855468 -CTTCTTTC-TTTCTTT
1 CCTTCTTTCTTTTCTTT
94855483 CCTTC
1 CCTTC
94855488 CTGCTTTTCG
Statistics
Matches: 18, Mismatches: 0, Indels: 4
0.82 0.00 0.18
Matches are distributed among these distances:
15 10 0.56
16 8 0.44
ACGTcount: A:0.00, C:0.31, G:0.00, T:0.69
Consensus pattern (17 bp):
CCTTCTTTCTTTTCTTT
Found at i:94855494 original size:20 final size:20
Alignment explanation
Indices: 94855456--94855494 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
94855446 ATTCTCCCTT
* * *
94855456 TTTCTTTTCTTTCTTCTTTC
1 TTTCTTTCCTTCCTGCTTTC
94855476 TTTCTTTCCTTCCTGCTTT
1 TTTCTTTCCTTCCTGCTTT
94855495 TCGTTTGCCT
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.00, C:0.28, G:0.03, T:0.69
Consensus pattern (20 bp):
TTTCTTTCCTTCCTGCTTTC
Found at i:94861871 original size:23 final size:22
Alignment explanation
Indices: 94861768--94861875 Score: 114
Period size: 21 Copynumber: 5.0 Consensus size: 22
94861758 CCTGATCAGT
* *
94861768 ATACGACACATAAAGTGCCT-A
1 ATACGACACATGAGGTGCCTGA
*
94861789 AAACGACACATGAGGTGCCTG-
1 ATACGACACATGAGGTGCCTGA
* *
94861810 ATACAACACACGAGGTGCCTG-
1 ATACGACACATGAGGTGCCTGA
*
94861831 ATACGACACACGAGGTGCCTGAA
1 ATACGACACATGAGGTGCCTG-A
* *
94861854 ATACGACACATAAAGTGCCTGA
1 ATACGACACATGAGGTGCCTGA
94861876 TCGATAAAGC
Statistics
Matches: 74, Mismatches: 10, Indels: 5
0.83 0.11 0.06
Matches are distributed among these distances:
21 55 0.74
22 1 0.01
23 18 0.24
ACGTcount: A:0.37, C:0.25, G:0.22, T:0.16
Consensus pattern (22 bp):
ATACGACACATGAGGTGCCTGA
Found at i:94863344 original size:16 final size:16
Alignment explanation
Indices: 94863311--94863340 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
94863301 TAATTCTCCC
94863311 TCTTTCTTTTCTTTCT
1 TCTTTCTTTTCTTTCT
94863327 TCTTTC-TTTCTTTC
1 TCTTTCTTTTCTTTC
94863341 CTTCCCCTGC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 8 0.57
16 6 0.43
ACGTcount: A:0.00, C:0.27, G:0.00, T:0.73
Consensus pattern (16 bp):
TCTTTCTTTTCTTTCT
Found at i:94871783 original size:40 final size:40
Alignment explanation
Indices: 94871728--94871869 Score: 207
Period size: 40 Copynumber: 3.6 Consensus size: 40
94871718 TATTCGAATG
94871728 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
* *
94871768 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTATTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
* * *
94871808 ATATCCGGGCTAAGGCCCAAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAG-TGACT
*
94871848 ATATCC-GGCTAAATCCCGAAGG
1 ATATCCGGGCTAAGTCCCGAAGG
94871870 TACTTGGGTT
Statistics
Matches: 91, Mismatches: 10, Indels: 3
0.88 0.10 0.03
Matches are distributed among these distances:
39 13 0.14
40 76 0.84
41 2 0.02
ACGTcount: A:0.23, C:0.23, G:0.27, T:0.27
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
Found at i:94877445 original size:29 final size:29
Alignment explanation
Indices: 94877403--94877463 Score: 122
Period size: 29 Copynumber: 2.1 Consensus size: 29
94877393 TCTAATAAAA
94877403 AACATAATAAAATAATGCACCAGGTAGGT
1 AACATAATAAAATAATGCACCAGGTAGGT
94877432 AACATAATAAAATAATGCACCAGGTAGGT
1 AACATAATAAAATAATGCACCAGGTAGGT
94877461 AAC
1 AAC
94877464 TCTAAAAGAG
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 32 1.00
ACGTcount: A:0.49, C:0.15, G:0.16, T:0.20
Consensus pattern (29 bp):
AACATAATAAAATAATGCACCAGGTAGGT
Found at i:94886837 original size:43 final size:42
Alignment explanation
Indices: 94886790--94886948 Score: 130
Period size: 43 Copynumber: 3.8 Consensus size: 42
94886780 TGTTCTCGAT
*
94886790 TAAGACCACGTCTGGGACGTCGGCATTGATATGTGGTTACGAG
1 TAAGACCACGTCTGGGACATCGGCATTG-TATGTGGTTACGAG
* * * * *
94886833 TAAGACCATGTCTGGGACATCGGCATCGTATTTGATT-CGTG
1 TAAGACCACGTCTGGGACATCGGCATTGTATGTGGTTACGAG
* *
94886874 TAAGACC-CTGTCTGGGACAAT-GGCATTGATATG-AGATA-GTATG
1 TAAGACCAC-GTCTGGGAC-ATCGGCATTG-TATGTGGTTACG-A-G
* * *
94886917 TAAGACCACGTCTAGGACGTTGGCATTGTATG
1 TAAGACCACGTCTGGGACATCGGCATTGTATG
94886949 GTATATGTGA
Statistics
Matches: 93, Mismatches: 15, Indels: 17
0.74 0.12 0.14
Matches are distributed among these distances:
41 27 0.29
42 17 0.18
43 48 0.52
44 1 0.01
ACGTcount: A:0.25, C:0.18, G:0.29, T:0.28
Consensus pattern (42 bp):
TAAGACCACGTCTGGGACATCGGCATTGTATGTGGTTACGAG
Found at i:94886889 original size:41 final size:43
Alignment explanation
Indices: 94886790--94886906 Score: 125
Period size: 41 Copynumber: 2.8 Consensus size: 43
94886780 TGTTCTCGAT
* * *
94886790 TAAGACCAC-GTCTGGGACGTCGGCATTGATATGTGGTTACGAG
1 TAAGACC-CTGTCTGGGACATCGGCATCGATATGTGATTACGAG
* * *
94886833 TAAGACCATGTCTGGGACATCGGCATCG-TATTTGATT-CGTG
1 TAAGACCCTGTCTGGGACATCGGCATCGATATGTGATTACGAG
*
94886874 TAAGACCCTGTCTGGGACAAT-GGCATTGATATG
1 TAAGACCCTGTCTGGGAC-ATCGGCATCGATATG
94886907 AGATAGTATG
Statistics
Matches: 62, Mismatches: 9, Indels: 7
0.79 0.12 0.09
Matches are distributed among these distances:
41 26 0.42
42 12 0.19
43 24 0.39
ACGTcount: A:0.24, C:0.19, G:0.29, T:0.28
Consensus pattern (43 bp):
TAAGACCCTGTCTGGGACATCGGCATCGATATGTGATTACGAG
Found at i:94898408 original size:14 final size:15
Alignment explanation
Indices: 94898384--94898413 Score: 53
Period size: 14 Copynumber: 2.1 Consensus size: 15
94898374 GGATATCAAA
94898384 ACAAGAATTAAGAAC
1 ACAAGAATTAAGAAC
94898399 ACAA-AATTAAGAAC
1 ACAAGAATTAAGAAC
94898413 A
1 A
94898414 AATTAAATAT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 11 0.73
15 4 0.27
ACGTcount: A:0.63, C:0.13, G:0.10, T:0.13
Consensus pattern (15 bp):
ACAAGAATTAAGAAC
Found at i:94903997 original size:21 final size:21
Alignment explanation
Indices: 94903973--94904028 Score: 76
Period size: 21 Copynumber: 2.7 Consensus size: 21
94903963 GAAACAGGGC
*
94903973 ACACACCCGTGTGGAAAGGCA
1 ACACGCCCGTGTGGAAAGGCA
* *
94903994 ACACGCCCGTGTGGAAGGGCT
1 ACACGCCCGTGTGGAAAGGCA
*
94904015 ACACGCACGTGTGG
1 ACACGCCCGTGTGG
94904029 TCATTATAAC
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 31 1.00
ACGTcount: A:0.25, C:0.29, G:0.34, T:0.12
Consensus pattern (21 bp):
ACACGCCCGTGTGGAAAGGCA
Found at i:94912352 original size:40 final size:41
Alignment explanation
Indices: 94912292--94912512 Score: 280
Period size: 40 Copynumber: 5.6 Consensus size: 41
94912282 TATTCGAATG
*
94912292 ATATCCGGGCTAAG-TCCCGAAGGCTTTTGTGCTAGTGACT
1 ATATCCGGGCTAAGATCCCGAAGGCATTTGTGCTAGTGACT
* *
94912332 ATATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGATCCCGAAGGCATTTGTGCTAG-TGACT
*
94912372 ATATCCGGGCTAAGA-CCCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAGATCCCGAAGGCATTTGTGCTAGTGACT
* *
94912412 ATATCCGGGTTAAG-TCCCGAAGGCATTTATGCTAGTGACT
1 ATATCCGGGCTAAGATCCCGAAGGCATTTGTGCTAGTGACT
* * *
94912452 ATATCCCGGCTAAGA-CCCGAAGGCATTTGTGCGAGTTG-TT
1 ATATCCGGGCTAAGATCCCGAAGGCATTTGTGCTAG-TGACT
94912492 ATATCC-GGCTAA-ATCCCGAAG
1 ATATCCGGGCTAAGATCCCGAAG
94912513 ATACTTGGGT
Statistics
Matches: 159, Mismatches: 14, Indels: 17
0.84 0.07 0.09
Matches are distributed among these distances:
38 1 0.01
39 14 0.09
40 139 0.87
41 5 0.03
ACGTcount: A:0.24, C:0.23, G:0.26, T:0.27
Consensus pattern (41 bp):
ATATCCGGGCTAAGATCCCGAAGGCATTTGTGCTAGTGACT
Found at i:94920611 original size:40 final size:41
Alignment explanation
Indices: 94920551--94920771 Score: 298
Period size: 40 Copynumber: 5.6 Consensus size: 41
94920541 TATTCGAATG
*
94920551 ATATCCGGGCTAAG-TCCCGAAGGCTTTTGTGCTAGTGACT
1 ATATCCGGGCTAAGATCCCGAAGGCATTTGTGCTAGTGACT
* *
94920591 ATATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGATCCCGAAGGCATTTGTGCTAG-TGACT
*
94920631 ATATCCGGGCTAAGA-CCCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAGATCCCGAAGGCATTTGTGCTAGTGACT
*
94920671 ATATCCGGGCTAAG-TCCCGAAGGCATTTATGCTAGTGACT
1 ATATCCGGGCTAAGATCCCGAAGGCATTTGTGCTAGTGACT
* *
94920711 ATATCCGGGCTAAGA-CCCGAAGGCATTTGTGCGAGTTG-TT
1 ATATCCGGGCTAAGATCCCGAAGGCATTTGTGCTAG-TGACT
94920751 ATATCC-GGCTAA-ATCCCGAAG
1 ATATCCGGGCTAAGATCCCGAAG
94920772 ATACTTGGGT
Statistics
Matches: 162, Mismatches: 11, Indels: 17
0.85 0.06 0.09
Matches are distributed among these distances:
38 1 0.01
39 14 0.09
40 142 0.88
41 5 0.03
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.26
Consensus pattern (41 bp):
ATATCCGGGCTAAGATCCCGAAGGCATTTGTGCTAGTGACT
Found at i:94921039 original size:22 final size:22
Alignment explanation
Indices: 94920999--94921040 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
94920989 GAATGTGCAT
*
94920999 ATATGAAGTTATTCATTTAGCC
1 ATATGAAGTTATACATTTAGCC
94921021 ATATGAATGTTATAC-TTTAG
1 ATATGAA-GTTATACATTTAG
94921041 TCGAAACTAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
22 12 0.67
23 6 0.33
ACGTcount: A:0.33, C:0.10, G:0.14, T:0.43
Consensus pattern (22 bp):
ATATGAAGTTATACATTTAGCC
Found at i:94924320 original size:39 final size:39
Alignment explanation
Indices: 94924216--94924388 Score: 210
Period size: 38 Copynumber: 4.5 Consensus size: 39
94924206 GCTACTCGTT
* * *
94924216 CAAATGCCTCCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTC-GGACTTAACCCGGATT-TAGTAACTCGCA
*
94924256 CAAATG-CTTCGGACTTAACCTGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGACTTAACCCGGATTTAGTAACTCGCA
94924294 CAAATGCCTTCGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGACTTAACCCGGATTTAGTAACTCGCA
* * * * *
94924333 CCAGTGCCTTCGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGACTTAACCCGGATTTAGTAACTCGCA
94924371 CAAA-GCCTTCGGATCTTA
1 CAAATGCCTTCGGA-CTTA
94924389 GTCGGATATG
Statistics
Matches: 117, Mismatches: 12, Indels: 9
0.85 0.09 0.07
Matches are distributed among these distances:
37 8 0.07
38 52 0.44
39 51 0.44
40 6 0.05
ACGTcount: A:0.26, C:0.28, G:0.20, T:0.25
Consensus pattern (39 bp):
CAAATGCCTTCGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:94924330 original size:77 final size:77
Alignment explanation
Indices: 94924216--94924388 Score: 208
Period size: 77 Copynumber: 2.2 Consensus size: 77
94924206 GCTACTCGTT
* * * *
94924216 CAAATGCCTCCGGGACATAGCCCGGTTATAGTAACTCGCACAAATG-CTTCGGACTTAACCTGGA
1 CAAATGCCTTC-GGACTTAACCCGGTTATAGTAACTCGCACAAATGCCTTCGG-CTTAACCCGGA
*
94924280 TTTAGTAACTCGCA
64 ATTAGTAACTCGCA
* * *
94924294 CAAATGCCTTCGGACTTAACCCGGATT-TAGTAACTCGCACCAGTGCCTTCGGCTTAGCCCGGAA
1 CAAATGCCTTCGGACTTAACCCGG-TTATAGTAACTCGCACAAATGCCTTCGGCTTAACCCGGAA
*
94924358 TTAGTATCTCGCA
65 TTAGTAACTCGCA
94924371 CAAA-GCCTTCGGATCTTA
1 CAAATGCCTTCGGA-CTTA
94924389 GTCGGATATG
Statistics
Matches: 83, Mismatches: 9, Indels: 7
0.84 0.09 0.07
Matches are distributed among these distances:
76 9 0.11
77 56 0.67
78 18 0.22
ACGTcount: A:0.26, C:0.28, G:0.20, T:0.25
Consensus pattern (77 bp):
CAAATGCCTTCGGACTTAACCCGGTTATAGTAACTCGCACAAATGCCTTCGGCTTAACCCGGAAT
TAGTAACTCGCA
Found at i:94928094 original size:44 final size:44
Alignment explanation
Indices: 94928026--94928149 Score: 160
Period size: 44 Copynumber: 2.8 Consensus size: 44
94928016 ATTACATGTA
*
94928026 TCGCATCCATAATGAACTCTGACCAACTCAACGAGCTCGGATGC
1 TCGCATCCATAATGAACTCAGACCAACTCAACGAGCTCGGATGC
* *
94928070 TCGCATCCATAATGAACTCAGACCAACTCAATGAGCTTGGATGC
1 TCGCATCCATAATGAACTCAGACCAACTCAACGAGCTCGGATGC
* * * *
94928114 -CTCATACATATTATGAACCCAGACCAGCTCAACGAG
1 TCGCATCCATA--ATGAACTCAGACCAACTCAACGAG
94928150 TTTTGGATTT
Statistics
Matches: 70, Mismatches: 8, Indels: 3
0.86 0.10 0.04
Matches are distributed among these distances:
43 8 0.11
44 41 0.59
45 21 0.30
ACGTcount: A:0.32, C:0.30, G:0.17, T:0.21
Consensus pattern (44 bp):
TCGCATCCATAATGAACTCAGACCAACTCAACGAGCTCGGATGC
Found at i:94933447 original size:127 final size:126
Alignment explanation
Indices: 94933187--94933582 Score: 496
Period size: 126 Copynumber: 3.2 Consensus size: 126
94933177 GATTTTGTTT
* * * *
94933187 TTTTTCTACAGTAGTTTCAGAAAAATTAATTTTGAGAAGACGGTTATGAAAAGATAATGTCAAAA
1 TTTTTCTACAGTAGTTCCTGAAAAATTAATTTTGAGAAGACGGTTATGAAAAAATAGTGTCAAAA
* * * * * * *
94933252 ACGCTTCAAGGAAGATGCACTATCAGTAAAATTACTGAAAGAAGCTCCCACGTGGACGT-TC
66 ACGCTTCAAGCAGGATGCACTGTCAGCAAAATTACTGAAAAAAACTCCTACGTGGAC-TCTC
* * * *
94933313 TTCTTCTACAGTAGTTCCTGAAAAATTAATTTTGAGAAGACAGTTCTAAAAAAATAGTGTCAAAA
1 TTTTTCTACAGTAGTTCCTGAAAAATTAATTTTGAGAAGACGGTTATGAAAAAATAGTGTC-AAA
*
94933378 AACACTTCAAGCAGGATGCACTGTCAGCAAAATTACTGAAAAAAACTCCTACGTGGACTCTC
65 AACGCTTCAAGCAGGATGCACTGTCAGCAAAATTACTGAAAAAAACTCCTACGTGGACTCTC
* * * *
94933440 TTTTTCTACAATAGTTCCTGAAAAAATAA-TTTGAGAAGTCGGTTATGAAAAAATAGTGTCAACA
1 TTTTTCTACAGTAGTTCCTGAAAAATTAATTTTGAGAAGACGGTTATGAAAAAATAGTGTCAAAA
* * * * *
94933504 ATGCTTCAAGTAGGATGCACTGTCAGCAAAATTACTG-AAAAAAGTTCTCACGCGGA-TGCTC
66 ACGCTTCAAGCAGGATGCACTGTCAGCAAAATTACTGAAAAAAACTCCT-ACGTGGACT-CTC
94933565 -TTTTCTACAGTAGTTCCT
1 TTTTTCTACAGTAGTTCCT
94933583 ATTTGGCCTT
Statistics
Matches: 235, Mismatches: 31, Indels: 10
0.85 0.11 0.04
Matches are distributed among these distances:
124 27 0.11
125 46 0.20
126 81 0.34
127 81 0.34
ACGTcount: A:0.37, C:0.17, G:0.17, T:0.29
Consensus pattern (126 bp):
TTTTTCTACAGTAGTTCCTGAAAAATTAATTTTGAGAAGACGGTTATGAAAAAATAGTGTCAAAA
ACGCTTCAAGCAGGATGCACTGTCAGCAAAATTACTGAAAAAAACTCCTACGTGGACTCTC
Found at i:94940981 original size:40 final size:40
Alignment explanation
Indices: 94940869--94941071 Score: 261
Period size: 40 Copynumber: 5.1 Consensus size: 40
94940859 CAGATGATAA
* * *
94940869 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTATA-T
*
94940909 CCGGGCTAAG-CCCGAAGGCAATT-GTGCGAGTTATTATAT
1 CCGGGCTAAGTCCCGAAGGC-ATTCGTGCGAGTTACTATAT
*
94940948 CCGGGCTAAGTCCCGAAGGCATTCGTGCAAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTATAT
* * *
94940988 TCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTATAT
* *
94941028 CCGGGCTATGTCCCGAAGGCATTCGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTA-CTATAT
94941068 CCGG
1 CCGG
94941072 TTGAATTCCG
Statistics
Matches: 144, Mismatches: 14, Indels: 10
0.86 0.08 0.06
Matches are distributed among these distances:
39 35 0.24
40 109 0.76
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTATAT
Found at i:94941041 original size:80 final size:79
Alignment explanation
Indices: 94940865--94941052 Score: 288
Period size: 80 Copynumber: 2.4 Consensus size: 79
94940855 TATTCAGATG
* *
94940865 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAATTCCGGGCTAAGCCCGAAGGCAA
1 ATAACCGGGCTAAGTCCCGAAGGCATTCGTGCAAGTGACTAATTCCGGGCTAAGCCCGAAGGCAA
*
94940930 TTGTGCGAGTTATT
66 TTGTGCGAGTTACT
* *
94940944 ATATCCGGGCTAAGTCCCGAAGGCATTCGTGCAAGTTACTATATT-CGGGCTAAGTCCCGAAGGC
1 ATAACCGGGCTAAGTCCCGAAGGCATTCGTGCAAGTGACTA-ATTCCGGGCTAAG-CCCGAAGGC
*
94941008 ATTTGTGCGAGTTACT
64 AATTGTGCGAGTTACT
*
94941024 ATAACCGGGCTATGTCCCGAAGGCATTCG
1 ATAACCGGGCTAAGTCCCGAAGGCATTCG
94941053 AGCGAGTAGC
Statistics
Matches: 99, Mismatches: 8, Indels: 3
0.90 0.07 0.03
Matches are distributed among these distances:
79 46 0.46
80 53 0.54
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.26
Consensus pattern (79 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTCGTGCAAGTGACTAATTCCGGGCTAAGCCCGAAGGCAA
TTGTGCGAGTTACT
Found at i:94949164 original size:40 final size:40
Alignment explanation
Indices: 94949058--94949259 Score: 277
Period size: 40 Copynumber: 5.1 Consensus size: 40
94949048 CAGATGATAA
* * *
94949058 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAT-T
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTATAT
*
94949097 CCGGGCTAAG-CCCGAAGGCAATT-GTGCGAGTTATTATAT
1 CCGGGCTAAGTCCCGAAGGC-ATTCGTGCGAGTTACTATAT
*
94949136 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTAACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTATAT
* *
94949176 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTATAT
* *
94949216 CCGGGCTATGTCCCGAAGGCATTCGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTA-CTATAT
94949256 CCGG
1 CCGG
94949260 TTGAATTCCG
Statistics
Matches: 146, Mismatches: 12, Indels: 9
0.87 0.07 0.05
Matches are distributed among these distances:
38 20 0.14
39 29 0.20
40 97 0.66
ACGTcount: A:0.23, C:0.24, G:0.29, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTATAT
Found at i:94949221 original size:80 final size:79
Alignment explanation
Indices: 94949054--94949259 Score: 315
Period size: 80 Copynumber: 2.6 Consensus size: 79
94949044 TATTCAGATG
* * *
94949054 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAT-TCCGGGCTAAGCCCGAAGGCAA
1 ATAACCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTAACTATATCCGGGCTAAGCCCGAAGGCAA
*
94949118 TTGTGCGAGTTATT
66 TTGTGCGAGTTACT
*
94949132 ATATCCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTAACTATATCCGGGCTAAGTCCCGAAGGCA
1 ATAACCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTAACTATATCCGGGCTAAG-CCCGAAGGCA
*
94949197 TTTGTGCGAGTTACT
65 ATTGTGCGAGTTACT
* * *
94949212 ATAACCGGGCTATGTCCCGAAGGCATTCGAGCGAGTAGCTATATCCGG
1 ATAACCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTAACTATATCCGG
94949260 TTGAATTCCG
Statistics
Matches: 116, Mismatches: 10, Indels: 2
0.91 0.08 0.02
Matches are distributed among these distances:
78 38 0.33
79 11 0.09
80 67 0.58
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.24
Consensus pattern (79 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTAACTATATCCGGGCTAAGCCCGAAGGCAA
TTGTGCGAGTTACT
Found at i:94958854 original size:20 final size:20
Alignment explanation
Indices: 94958829--94958871 Score: 86
Period size: 20 Copynumber: 2.1 Consensus size: 20
94958819 GGTTTTATGT
94958829 AACACCCCTCACCCATATCC
1 AACACCCCTCACCCATATCC
94958849 AACACCCCTCACCCATATCC
1 AACACCCCTCACCCATATCC
94958869 AAC
1 AAC
94958872 GTCGGGATAG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.33, C:0.53, G:0.00, T:0.14
Consensus pattern (20 bp):
AACACCCCTCACCCATATCC
Found at i:94960553 original size:38 final size:38
Alignment explanation
Indices: 94960510--94960671 Score: 171
Period size: 38 Copynumber: 4.0 Consensus size: 38
94960500 TTTCAAATTA
*
94960510 ACATGTATAACCGTGGCATATCCACTTAGCACCACGTT
1 ACATGTATAACCGTGGTATATCCACTTAGCACCACGTT
* *
94960548 ACATGTTTAACTGTGGTATATCCACTTAGCACCACGTT
1 ACATGTATAACCGTGGTATATCCACTTAGCACCACGTT
* *
94960586 ACATGTATCAATATGTGTAATCATGGTATATCCACTTAGCACCACGTT
1 ACATG------TA----TAACCGTGGTATATCCACTTAGCACCACGTT
* *
94960634 ACACGTATAATCGTGGTATATCCACTTAGCACCACGTT
1 ACATGTATAACCGTGGTATATCCACTTAGCACCACGTT
94960672 TTTTCATTCC
Statistics
Matches: 105, Mismatches: 9, Indels: 20
0.78 0.07 0.15
Matches are distributed among these distances:
38 70 0.67
42 2 0.02
44 1 0.01
48 32 0.30
ACGTcount: A:0.29, C:0.25, G:0.15, T:0.31
Consensus pattern (38 bp):
ACATGTATAACCGTGGTATATCCACTTAGCACCACGTT
Found at i:94973440 original size:26 final size:26
Alignment explanation
Indices: 94973411--94973463 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
94973401 TACAGGAAGT
94973411 TAGTTTTCTTGGGCATATAGTATCTA
1 TAGTTTTCTTGGGCATATAGTATCTA
*
94973437 TAGTTTTCTTGGGCATATGGTATCTA
1 TAGTTTTCTTGGGCATATAGTATCTA
94973463 T
1 T
94973464 TGAAGATGTC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.21, C:0.11, G:0.21, T:0.47
Consensus pattern (26 bp):
TAGTTTTCTTGGGCATATAGTATCTA
Found at i:94997157 original size:18 final size:18
Alignment explanation
Indices: 94997136--94997170 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
94997126 AAAAGGAAAC
*
94997136 ATATAAGAGTTAGGATAT
1 ATATAAGAGCTAGGATAT
*
94997154 ATATAAGGGCTAGGATA
1 ATATAAGAGCTAGGATA
94997171 CACACCTGAC
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.43, C:0.03, G:0.26, T:0.29
Consensus pattern (18 bp):
ATATAAGAGCTAGGATAT
Found at i:94998681 original size:25 final size:24
Alignment explanation
Indices: 94998644--94998695 Score: 61
Period size: 25 Copynumber: 2.1 Consensus size: 24
94998634 GTAGTTATAA
* *
94998644 AAAATTATAAAAT-AAAAATTAATT
1 AAAATTACAAAATGAAAAAAT-ATT
94998668 AAAATTACATAAATGAAAAAATATT
1 AAAATTACA-AAATGAAAAAATATT
94998693 AAA
1 AAA
94998696 TAATATTCAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
24 8 0.33
25 10 0.42
26 6 0.25
ACGTcount: A:0.67, C:0.02, G:0.02, T:0.29
Consensus pattern (24 bp):
AAAATTACAAAATGAAAAAATATT
Found at i:95001034 original size:22 final size:20
Alignment explanation
Indices: 95001004--95001043 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 20
95000994 TTTAAAATAT
*
95001004 AAAAAAATTCATTAAAATTGC
1 AAAAAAATTC-CTAAAATTGC
95001025 AAAAAGAATTCCTAAAATT
1 AAAAA-AATTCCTAAAATT
95001044 TCCAAACAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
21 12 0.71
22 5 0.29
ACGTcount: A:0.57, C:0.10, G:0.05, T:0.28
Consensus pattern (20 bp):
AAAAAAATTCCTAAAATTGC
Found at i:95001469 original size:20 final size:18
Alignment explanation
Indices: 95001446--95001485 Score: 53
Period size: 18 Copynumber: 2.1 Consensus size: 18
95001436 TAGTATTTTT
95001446 TTTTTGGAAATTTTATGATA
1 TTTTT-GAAATTTT-TGATA
*
95001466 TTTTTGCAATTTTTGATA
1 TTTTTGAAATTTTTGATA
95001484 TT
1 TT
95001486 ATGAAGGAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
18 7 0.37
19 7 0.37
20 5 0.26
ACGTcount: A:0.25, C:0.03, G:0.12, T:0.60
Consensus pattern (18 bp):
TTTTTGAAATTTTTGATA
Found at i:95002096 original size:20 final size:20
Alignment explanation
Indices: 95002073--95002144 Score: 94
Period size: 20 Copynumber: 3.6 Consensus size: 20
95002063 AAAAATTACA
*
95002073 AAATAATCAAAATAATTTTT
1 AAATATTCAAAATAATTTTT
95002093 AAATATTCAAAATAATTTTT
1 AAATATTCAAAATAATTTTT
*
95002113 AAA-ATTCAAAAT-ATTTATA
1 AAATATTCAAAATAATTT-TT
*
95002132 AAATTTTCAAAAT
1 AAATATTCAAAAT
95002145 TTATATTTTT
Statistics
Matches: 47, Mismatches: 3, Indels: 4
0.87 0.06 0.07
Matches are distributed among these distances:
18 4 0.09
19 13 0.28
20 30 0.64
ACGTcount: A:0.54, C:0.06, G:0.00, T:0.40
Consensus pattern (20 bp):
AAATATTCAAAATAATTTTT
Found at i:95004919 original size:21 final size:21
Alignment explanation
Indices: 95004880--95004924 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 21
95004870 TTTGAGTAGC
***
95004880 GATTTTTTTTTTTTTAAAGTA
1 GATTTTTTTTTTAAAAAAGTA
95004901 GATTTTTTTTTTAAAAAAGTA
1 GATTTTTTTTTTAAAAAAGTA
95004922 GAT
1 GAT
95004925 GTGTGGTGAG
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.31, C:0.00, G:0.11, T:0.58
Consensus pattern (21 bp):
GATTTTTTTTTTAAAAAAGTA
Found at i:95005107 original size:26 final size:26
Alignment explanation
Indices: 95005078--95005132 Score: 74
Period size: 26 Copynumber: 2.1 Consensus size: 26
95005068 ATAAATATAG
*
95005078 AAAAAAATATGTTGAAATATTTATTT
1 AAAAAAATATGTTGAAATATTTACTT
** *
95005104 AAAAATTTATGTTTAAATATTTACTT
1 AAAAAAATATGTTGAAATATTTACTT
95005130 AAA
1 AAA
95005133 TTTAAGAAGA
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.49, C:0.02, G:0.05, T:0.44
Consensus pattern (26 bp):
AAAAAAATATGTTGAAATATTTACTT
Found at i:95008304 original size:17 final size:17
Alignment explanation
Indices: 95008282--95008319 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 17
95008272 TCTAGGAGTG
95008282 GAAAGAA-AAAAGAAAAT
1 GAAAGAAGAAAA-AAAAT
95008299 GAAAGAATGAAAAAAAAT
1 GAAAGAA-GAAAAAAAAT
95008317 GAA
1 GAA
95008320 TGGATGAGTA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
17 7 0.37
18 8 0.42
19 4 0.21
ACGTcount: A:0.74, C:0.00, G:0.18, T:0.08
Consensus pattern (17 bp):
GAAAGAAGAAAAAAAAT
Found at i:95012449 original size:48 final size:48
Alignment explanation
Indices: 95012177--95012452 Score: 315
Period size: 48 Copynumber: 5.8 Consensus size: 48
95012167 AAAAGTACTA
* * * ** * * *
95012177 ATGCCATGTCCCCGACATGGTTTTACATGAATC-CACATATCACCGCCA
1 ATGCCATGTCCCAGACATGGTCTTACA-CAGGCACATATATCATCGCCG
* * *
95012225 ATGCCATGTCCCAGACATGGTCTTACACTGGCACACATATCATCGCTG
1 ATGCCATGTCCCAGACATGGTCTTACACAGGCACATATATCATCGCCG
* *
95012273 ATGCCATGTTCCAGACATGG-CTTTACACAGGCGCATATATCATCGCCG
1 ATGCCATGTCCCAGACATGGTC-TTACACAGGCACATATATCATCGCCG
* * * *
95012321 ATGCCGTGTCCTAGACATGGTCTTACACAGGCACATATATCATCACTG
1 ATGCCATGTCCCAGACATGGTCTTACACAGGCACATATATCATCGCCG
* *
95012369 ATGCCATGTCCC-GAACATGGTCTTACATAGGCATATATATCATCGCCG
1 ATGCCATGTCCCAG-ACATGGTCTTACACAGGCACATATATCATCGCCG
* *
95012417 ATGCCATGTCTCGGACATGGTCTTACACAGGCACAT
1 ATGCCATGTCCCAGACATGGTCTTACACAGGCACAT
95012453 TTAGCACGGT
Statistics
Matches: 194, Mismatches: 29, Indels: 10
0.83 0.12 0.04
Matches are distributed among these distances:
47 3 0.02
48 189 0.97
49 2 0.01
ACGTcount: A:0.26, C:0.29, G:0.19, T:0.26
Consensus pattern (48 bp):
ATGCCATGTCCCAGACATGGTCTTACACAGGCACATATATCATCGCCG
Found at i:95018489 original size:11 final size:11
Alignment explanation
Indices: 95018453--95018508 Score: 57
Period size: 11 Copynumber: 5.5 Consensus size: 11
95018443 CATGGTATGT
95018453 ATGATATGCAC
1 ATGATATGCAC
* *
95018464 ATGACATG--T
1 ATGATATGCAC
95018473 ATGATATGCAC
1 ATGATATGCAC
*
95018484 ATGATATG--T
1 ATGATATGCAC
95018493 ATGATATGCAC
1 ATGATATGCAC
95018504 ATGAT
1 ATGAT
95018509 GTAATCACAA
Statistics
Matches: 35, Mismatches: 6, Indels: 8
0.71 0.12 0.16
Matches are distributed among these distances:
9 15 0.43
11 20 0.57
ACGTcount: A:0.36, C:0.12, G:0.20, T:0.32
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:95018508 original size:20 final size:20
Alignment explanation
Indices: 95018442--95018508 Score: 116
Period size: 20 Copynumber: 3.4 Consensus size: 20
95018432 ATTTTGATAA
*
95018442 ACATGGTATGTATGATATGC
1 ACATGATATGTATGATATGC
*
95018462 ACATGACATGTATGATATGC
1 ACATGATATGTATGATATGC
95018482 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
95018502 ACATGAT
1 ACATGAT
95018509 GTAATCACAA
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 44 1.00
ACGTcount: A:0.34, C:0.12, G:0.21, T:0.33
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:95018586 original size:24 final size:24
Alignment explanation
Indices: 95018559--95018676 Score: 152
Period size: 23 Copynumber: 5.0 Consensus size: 24
95018549 GAGGAAGTGA
95018559 AAAAAGGCTTATGCCCCAGTTATT
1 AAAAAGGCTTATGCCCCAGTTATT
95018583 -AAAAGGCTTATGCCCCAGTTATT
1 AAAAAGGCTTATGCCCCAGTTATT
*
95018606 -AAAGGGCTTATGCCCCAGTTATT
1 AAAAAGGCTTATGCCCCAGTTATT
* * *
95018629 AAAAGGGCTTTTGCCCCAGCTATT
1 AAAAAGGCTTATGCCCCAGTTATT
*
95018653 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAA-AGGCTTATGCC-CCAGTTAT
95018677 ATGATAAAGC
Statistics
Matches: 84, Mismatches: 7, Indels: 5
0.88 0.07 0.05
Matches are distributed among these distances:
23 45 0.54
24 29 0.35
25 10 0.12
ACGTcount: A:0.30, C:0.22, G:0.20, T:0.28
Consensus pattern (24 bp):
AAAAAGGCTTATGCCCCAGTTATT
Found at i:95018590 original size:23 final size:23
Alignment explanation
Indices: 95018560--95018657 Score: 160
Period size: 23 Copynumber: 4.2 Consensus size: 23
95018550 AGGAAGTGAA
95018560 AAAAGGCTTATGCCCCAGTTATT
1 AAAAGGCTTATGCCCCAGTTATT
95018583 AAAAGGCTTATGCCCCAGTTATT
1 AAAAGGCTTATGCCCCAGTTATT
*
95018606 AAAGGGCTTATGCCCCAGTTATT
1 AAAAGGCTTATGCCCCAGTTATT
* *
95018629 AAAAGGGCTTTTGCCCCAGCTATT
1 AAAA-GGCTTATGCCCCAGTTATT
95018653 AAAAG
1 AAAAG
95018658 AGGCTAGGCC
Statistics
Matches: 70, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
23 49 0.70
24 21 0.30
ACGTcount: A:0.31, C:0.21, G:0.19, T:0.29
Consensus pattern (23 bp):
AAAAGGCTTATGCCCCAGTTATT
Found at i:95022014 original size:37 final size:37
Alignment explanation
Indices: 95021968--95022042 Score: 150
Period size: 37 Copynumber: 2.0 Consensus size: 37
95021958 AACAAAGCTC
95021968 ATAAGAAAAAATATGAATGATCTCGATAATTCTTCAG
1 ATAAGAAAAAATATGAATGATCTCGATAATTCTTCAG
95022005 ATAAGAAAAAATATGAATGATCTCGATAATTCTTCAG
1 ATAAGAAAAAATATGAATGATCTCGATAATTCTTCAG
95022042 A
1 A
95022043 GAAAAGAAGT
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.47, C:0.11, G:0.13, T:0.29
Consensus pattern (37 bp):
ATAAGAAAAAATATGAATGATCTCGATAATTCTTCAG
Found at i:95026070 original size:43 final size:42
Alignment explanation
Indices: 95025964--95026081 Score: 116
Period size: 43 Copynumber: 2.8 Consensus size: 42
95025954 AGTTTGAGAT
* *
95025964 TTACGTGTAAGACTATGTCTGGGACA-TCGGCATCGTATATGA
1 TTACGTGTAAGACCATGTCTGGGACAGT-GGCATCATATATGA
* * *
95026006 TT-CTGTGTAAGACCCTATCTGGGACAGTGGCATCAATATTTGA
1 TTAC-GTGTAAGACCATGTCTGGGACAGTGGCATC-ATATATGA
* *
95026049 TTACATGTAAGACCGTGTCTGGGAC-GTTGGCAT
1 TTACGTGTAAGACCATGTCTGGGACAG-TGGCAT
95026082 TGTATGAGCT
Statistics
Matches: 63, Mismatches: 8, Indels: 9
0.79 0.10 0.11
Matches are distributed among these distances:
41 1 0.02
42 28 0.44
43 33 0.52
44 1 0.02
ACGTcount: A:0.25, C:0.18, G:0.26, T:0.31
Consensus pattern (42 bp):
TTACGTGTAAGACCATGTCTGGGACAGTGGCATCATATATGA
Found at i:95027880 original size:119 final size:120
Alignment explanation
Indices: 95027704--95027926 Score: 310
Period size: 119 Copynumber: 1.9 Consensus size: 120
95027694 TACTCGTTCA
** *
95027704 AATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGTT
1 AATGCCTTCGGGACATAGCCCGAATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGAT
*
95027769 ATAGTAAC-TCGCACAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACC
66 ATAGTAACTTAGCACAAA-GCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACC
* *
95027824 AATGCCTTCGGG-CTTAGCCCAGAAT-TAGTAACTCGCACAAATGCCTTC-GGATCTTAGTCCGG
1 AATGCCTTCGGGACATAGCCC-GAATATAGTAACTCGCACAAATGCCTTCGGGA-CTTAGCCCGG
* * *
95027886 ATATGGTCACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
64 ATATAGTAACTTAGCACAAAGCCTTCGGGACTTAACCCGGA
95027927 CATCATTCGA
Statistics
Matches: 91, Mismatches: 9, Indels: 7
0.85 0.08 0.07
Matches are distributed among these distances:
118 3 0.03
119 66 0.73
120 22 0.24
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (120 bp):
AATGCCTTCGGGACATAGCCCGAATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGAT
ATAGTAACTTAGCACAAAGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACC
Found at i:95027926 original size:40 final size:40
Alignment explanation
Indices: 95027683--95027926 Score: 300
Period size: 40 Copynumber: 6.1 Consensus size: 40
95027673 CGGAATTTAA
** *
95027683 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
*
95027723 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
95027763 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
95027803 CCGGATTTAGTAACTCGCACCAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
95027842 CCAGA-ATTAGTAACTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
95027882 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
95027922 CCGGA
1 CCGGA
95027927 CATCATTCGA
Statistics
Matches: 179, Mismatches: 18, Indels: 14
0.85 0.09 0.07
Matches are distributed among these distances:
38 2 0.01
39 32 0.18
40 133 0.74
41 12 0.07
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:95034934 original size:119 final size:120
Alignment explanation
Indices: 95034728--95034950 Score: 319
Period size: 119 Copynumber: 1.9 Consensus size: 120
95034718 TACTCGTTCA
* *
95034728 AATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGTT
1 AATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGAT
*
95034793 ATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACC
66 ATAGTAACTAGCACAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACC
* *
95034848 AATGCCTTCGGG-CTTAGCCCGGA-ATTAGTAACTCGCACAAATGCCTTC-GGATCTTAGTCCGG
1 AATGCCTTCGGGACATAGCCCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGCCCGG
* * *
95034910 ATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGCCCGGA
64 ATATAGTAAC-TAGCACAAATGCCTTCGGGACTTAACCCGGA
95034951 CATCATTCGA
Statistics
Matches: 92, Mismatches: 8, Indels: 7
0.86 0.07 0.07
Matches are distributed among these distances:
118 4 0.04
119 68 0.74
120 20 0.22
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (120 bp):
AATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGAT
ATAGTAACTAGCACAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACC
Found at i:95034950 original size:40 final size:40
Alignment explanation
Indices: 95034707--95034950 Score: 309
Period size: 40 Copynumber: 6.1 Consensus size: 40
95034697 TCGAATTTAA
** *
95034707 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
*
95034747 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
95034787 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
95034827 CCGGATTTAGTAACTCGCACCAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
95034866 CCGGA-ATTAGTAACTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
95034906 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
95034946 CCGGA
1 CCGGA
95034951 CATCATTCGA
Statistics
Matches: 181, Mismatches: 16, Indels: 14
0.86 0.08 0.07
Matches are distributed among these distances:
38 2 0.01
39 33 0.18
40 134 0.74
41 12 0.07
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:95040963 original size:20 final size:18
Alignment explanation
Indices: 95040913--95040964 Score: 54
Period size: 20 Copynumber: 2.8 Consensus size: 18
95040903 CTACAAGATA
95040913 AACATTAAATTAA-ATTT
1 AACATTAAATTAATATTT
95040930 AACATTAAGA-TAATCACTTT
1 AACATTAA-ATTAAT-A-TTT
*
95040950 AATATTAAATTAATA
1 AACATTAAATTAATA
95040965 AAATACTATT
Statistics
Matches: 29, Mismatches: 1, Indels: 8
0.76 0.03 0.21
Matches are distributed among these distances:
17 11 0.38
18 1 0.03
19 3 0.10
20 14 0.48
ACGTcount: A:0.52, C:0.08, G:0.02, T:0.38
Consensus pattern (18 bp):
AACATTAAATTAATATTT
Found at i:95048257 original size:29 final size:29
Alignment explanation
Indices: 95048215--95048303 Score: 110
Period size: 29 Copynumber: 3.1 Consensus size: 29
95048205 CAAAAGCATG
*
95048215 CATATGAATGTGATTTGGGCCTAATGGGC
1 CATATGAATATGATTTGGGCCTAATGGGC
* *
95048244 CATATTAATATGATTTGGGCCTAATAGGC
1 CATATGAATATGATTTGGGCCTAATGGGC
* *
95048273 CATATGAATGA-GA-TTAGGCCTAGTGGGC
1 CATATGAAT-ATGATTTGGGCCTAATGGGC
95048301 CAT
1 CAT
95048304 GTAACGCCCC
Statistics
Matches: 52, Mismatches: 7, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
28 15 0.29
29 36 0.69
30 1 0.02
ACGTcount: A:0.28, C:0.15, G:0.27, T:0.30
Consensus pattern (29 bp):
CATATGAATATGATTTGGGCCTAATGGGC
Found at i:95049786 original size:93 final size:92
Alignment explanation
Indices: 95049628--95049797 Score: 295
Period size: 93 Copynumber: 1.8 Consensus size: 92
95049618 GCCCCTAAGT
*
95049628 GAACTCGGACTCAACTCAACGAGCTCGGCGTTCGCATCCATAAATGAACTCGGACTCAACTCAAC
1 GAACTCGGACTCAACTCAACGAGCTCGGCATTCGCATCCATAAATGAACTCGGACTCAACTCAAC
95049693 GAGTTCGGATGCCTAGTTACATCTCAC
66 GAGTTCGGATGCCTAGTTACATCTCAC
* * *
95049720 GAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGG-CATTCGCATCCATAAATGAACTCGGACTCAACTCAA
95049785 CGAGTTCGGATGC
65 CGAGTTCGGATGC
95049798 TCAACCATCC
Statistics
Matches: 73, Mismatches: 4, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
92 27 0.37
93 46 0.63
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.22
Consensus pattern (92 bp):
GAACTCGGACTCAACTCAACGAGCTCGGCATTCGCATCCATAAATGAACTCGGACTCAACTCAAC
GAGTTCGGATGCCTAGTTACATCTCAC
Found at i:95049787 original size:46 final size:46
Alignment explanation
Indices: 95049623--95049794 Score: 208
Period size: 45 Copynumber: 3.7 Consensus size: 46
95049613 AACCCGCCCC
* * *
95049623 TAAGTGAACTCGGACTCAACTCAACGAGCTCGG-CGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
* * *
95049668 TAAATGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT-C-
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-ATTTGCATCCA
* *
95049716 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
95049761 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
95049795 TGCTCAACCA
Statistics
Matches: 107, Mismatches: 12, Indels: 15
0.80 0.09 0.11
Matches are distributed among these distances:
43 6 0.06
44 2 0.02
45 33 0.31
46 29 0.27
47 29 0.27
48 2 0.02
49 2 0.02
50 4 0.04
ACGTcount: A:0.30, C:0.28, G:0.20, T:0.22
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
Found at i:95056956 original size:19 final size:20
Alignment explanation
Indices: 95056932--95056969 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
95056922 GGTACCACCA
95056932 AAACAT-ATATCA-CATCTTT
1 AAACATCAT-TCATCATCTTT
95056951 AAACATCATTCATCATCTT
1 AAACATCATTCATCATCTT
95056970 ACCACCTTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.39, C:0.24, G:0.00, T:0.37
Consensus pattern (20 bp):
AAACATCATTCATCATCTTT
Found at i:95057357 original size:93 final size:92
Alignment explanation
Indices: 95057199--95057368 Score: 295
Period size: 93 Copynumber: 1.8 Consensus size: 92
95057189 GCCCCTAAGT
*
95057199 GAACTCGGACTCAACTCAACGAGCTCGGCGTTCGCATCCATAAATGAACTCGGACTCAACTCAAC
1 GAACTCGGACTCAACTCAACGAGCTCGGCATTCGCATCCATAAATGAACTCGGACTCAACTCAAC
95057264 GAGTTCGGATGCCTAGTTACATCTCAC
66 GAGTTCGGATGCCTAGTTACATCTCAC
* * *
95057291 GAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGG-CATTCGCATCCATAAATGAACTCGGACTCAACTCAA
95057356 CGAGTTCGGATGC
65 CGAGTTCGGATGC
95057369 TCAACCATCC
Statistics
Matches: 73, Mismatches: 4, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
92 27 0.37
93 46 0.63
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.22
Consensus pattern (92 bp):
GAACTCGGACTCAACTCAACGAGCTCGGCATTCGCATCCATAAATGAACTCGGACTCAACTCAAC
GAGTTCGGATGCCTAGTTACATCTCAC
Found at i:95057358 original size:46 final size:46
Alignment explanation
Indices: 95057194--95057365 Score: 208
Period size: 45 Copynumber: 3.7 Consensus size: 46
95057184 AACCCGCCCC
* * *
95057194 TAAGTGAACTCGGACTCAACTCAACGAGCTCGG-CGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
* * *
95057239 TAAATGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT-C-
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-ATTTGCATCCA
* *
95057287 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
95057332 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
95057366 TGCTCAACCA
Statistics
Matches: 107, Mismatches: 12, Indels: 15
0.80 0.09 0.11
Matches are distributed among these distances:
43 6 0.06
44 2 0.02
45 33 0.31
46 29 0.27
47 29 0.27
48 2 0.02
49 2 0.02
50 4 0.04
ACGTcount: A:0.30, C:0.28, G:0.20, T:0.22
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
Found at i:95063544 original size:5 final size:5
Alignment explanation
Indices: 95063536--95063594 Score: 70
Period size: 5 Copynumber: 12.0 Consensus size: 5
95063526 ATCCTAATTT
*
95063536 AATAA AATAA AATAA AA-ATA AATAA AA-AT AATAA AACT-A AATAA AATAA
1 AATAA AATAA AATAA AATA-A AATAA AATAA AATAA AA-TAA AATAA AATAA
95063585 AATAA AATAA
1 AATAA AATAA
95063595 TATCTTCTAT
Statistics
Matches: 47, Mismatches: 2, Indels: 10
0.80 0.03 0.17
Matches are distributed among these distances:
4 5 0.11
5 40 0.85
6 2 0.04
ACGTcount: A:0.78, C:0.02, G:0.00, T:0.20
Consensus pattern (5 bp):
AATAA
Found at i:95063571 original size:24 final size:24
Alignment explanation
Indices: 95063541--95063586 Score: 67
Period size: 24 Copynumber: 1.9 Consensus size: 24
95063531 AATTTAATAA
95063541 AATAAAA-TAAAAATAAATAAAAAT
1 AATAAAACTAAAAA-AAATAAAAAT
*
95063565 AATAAAACTAAATAAAATAAAA
1 AATAAAACTAAAAAAAATAAAA
95063587 TAAAATAATA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
24 15 0.75
25 5 0.25
ACGTcount: A:0.78, C:0.02, G:0.00, T:0.20
Consensus pattern (24 bp):
AATAAAACTAAAAAAAATAAAAAT
Found at i:95071557 original size:27 final size:27
Alignment explanation
Indices: 95071527--95071604 Score: 129
Period size: 27 Copynumber: 2.9 Consensus size: 27
95071517 ATCAGTAGTC
* *
95071527 CTACCCTATAGGGGTATTTCGGTATTT
1 CTACCCTACAAGGGTATTTCGGTATTT
*
95071554 CTACCCTACAAGGGTATTTTGGTATTT
1 CTACCCTACAAGGGTATTTCGGTATTT
95071581 CTACCCTACAAGGGTATTTCGGTA
1 CTACCCTACAAGGGTATTTCGGTA
95071605 ATTTTGTAAA
Statistics
Matches: 47, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 47 1.00
ACGTcount: A:0.22, C:0.21, G:0.21, T:0.37
Consensus pattern (27 bp):
CTACCCTACAAGGGTATTTCGGTATTT
Found at i:95071621 original size:27 final size:27
Alignment explanation
Indices: 95071591--95071910 Score: 226
Period size: 27 Copynumber: 11.9 Consensus size: 27
95071581 CTACCCTACA
**
95071591 AGGGTATTTCGGTAATTTTGTAAATCG
1 AGGGTATTTCGGTAATTTTACAAATCG
** **
95071618 AGGGTAAAAT-GGTAATTTTGTAAATCG
1 AGGGT-ATTTCGGTAATTTTACAAATCG
* *
95071645 GGGGTACTTT-GGTAATTTTACAAGTCG
1 AGGGTA-TTTCGGTAATTTTACAAATCG
* ** *
95071672 AGGGTATTTCAGTAATTTTACAGGTCA
1 AGGGTATTTCGGTAATTTTACAAATCG
* *
95071699 AGGGTATTTCAGTAATTTCACAAATC-
1 AGGGTATTTCGGTAATTTTACAAATCG
* *
95071725 AGGGGTATTTTGGTAATTTTACAAA-CT
1 A-GGGTATTTCGGTAATTTTACAAATCG
* *
95071752 AGGGGTATTTTGGTAATTTTACAAA-CT
1 A-GGGTATTTCGGTAATTTTACAAATCG
* * *
95071779 AGGGGTATTTTGGTAATTTTAGAAA-CC
1 A-GGGTATTTCGGTAATTTTACAAATCG
* * * *
95071806 ATGGGTATTTAGATAATTTTAC-AAGCT
1 A-GGGTATTTCGGTAATTTTACAAATCG
* *
95071833 AGGGGTATTTTGGTAATTTTACAAA-CC
1 A-GGGTATTTCGGTAATTTTACAAATCG
* *
95071860 ATGGGTATTTTGGTAATTTTACAAA-CC
1 A-GGGTATTTCGGTAATTTTACAAATCG
*
95071887 AGGGGTATTTTGGTAATTTTACAA
1 A-GGGTATTTCGGTAATTTTACAA
95071911 CTTATTTACT
Statistics
Matches: 255, Mismatches: 31, Indels: 14
0.85 0.10 0.05
Matches are distributed among these distances:
26 8 0.03
27 243 0.95
28 4 0.02
ACGTcount: A:0.30, C:0.09, G:0.23, T:0.38
Consensus pattern (27 bp):
AGGGTATTTCGGTAATTTTACAAATCG
Found at i:95071704 original size:54 final size:53
Alignment explanation
Indices: 95071646--95071910 Score: 309
Period size: 54 Copynumber: 4.9 Consensus size: 53
95071636 TGTAAATCGG
* * ** *** *
95071646 GGGTACTTTGGTAATTTTAC-AAGTCGAGGGTATTTCAGTAATTTTACAGGTCAA
1 GGGTA-TTTGGTAATTTTACAAACTAG-GGGTATTTTGGTAATTTTACAAACCAT
* * * *
95071700 GGGTATTTCAGTAATTTCACAAA-TCAGGGGTATTTTGGTAATTTTACAAACTAG
1 GGGTATTT-GGTAATTTTACAAACT-AGGGGTATTTTGGTAATTTTACAAACCAT
*
95071754 GGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTAGAAACCAT
1 GGGTA-TTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTACAAACCAT
* *
95071808 GGGTATTTAGATAATTTTACAAGCTAGGGGTATTTTGGTAATTTTACAAACCAT
1 GGGTATTT-GGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTACAAACCAT
*
95071862 GGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTACAA
1 GGGTA-TTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTACAA
95071911 CTTATTTACT
Statistics
Matches: 183, Mismatches: 21, Indels: 14
0.84 0.10 0.06
Matches are distributed among these distances:
53 6 0.03
54 167 0.91
55 10 0.05
ACGTcount: A:0.30, C:0.09, G:0.22, T:0.39
Consensus pattern (53 bp):
GGGTATTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTACAAACCAT
Found at i:95081028 original size:37 final size:37
Alignment explanation
Indices: 95080978--95081056 Score: 106
Period size: 37 Copynumber: 2.1 Consensus size: 37
95080968 TTATTACGAA
* * * *
95080978 GTCTTACCTGGACATAATCTCCACACG-AAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGTAA-TCATCGG
95081015 GTCTTACCCGGACAAAATCCCCACACGTAATCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGTAATCATCGG
95081052 GTCTT
1 GTCTT
95081057 TAGAGCTCGG
Statistics
Matches: 37, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
37 35 0.95
38 2 0.05
ACGTcount: A:0.27, C:0.30, G:0.18, T:0.25
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGTAATCATCGG
Found at i:95081253 original size:47 final size:47
Alignment explanation
Indices: 95081175--95081540 Score: 572
Period size: 47 Copynumber: 7.7 Consensus size: 47
95081165 CCCTTCGGGA
* * * * * *
95081175 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
95081222 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
95081269 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
95081316 CTTATCACATATATACACTTTCACATTCATCACATCAGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
95081363 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
95081410 CTTATCAAATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
95081457 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
95081506 CTTATCTCATATATGCA-TGTTCACATCCATCACAT
1 CTTATCACATATATACACT-TTCACATTCATCACAT
95081541 AGAATCCTAA
Statistics
Matches: 297, Mismatches: 19, Indels: 6
0.92 0.06 0.02
Matches are distributed among these distances:
46 1 0.00
47 250 0.84
49 46 0.15
ACGTcount: A:0.29, C:0.30, G:0.08, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:95082932 original size:40 final size:40
Alignment explanation
Indices: 95082880--95083109 Score: 336
Period size: 40 Copynumber: 5.8 Consensus size: 40
95082870 ATAACCACAA
* * * *
95082880 GCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
* *
95082920 GCACGAATGCCTTCGGGTCTTAGCCCGGATATATCATCTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
*
95082960 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
*
95083000 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
* *
95083040 GCACAAATGCCTTCGGGTCTTAGCCCGGATAAAATC-ACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGAT-ATATCAACTC
* *
95083080 GCATAAATGCCTTCGGGACTTAGCCCGGAT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGAT
95083110 GTATTCAAAT
Statistics
Matches: 176, Mismatches: 13, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
40 172 0.98
41 4 0.02
ACGTcount: A:0.24, C:0.28, G:0.22, T:0.26
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
Found at i:95090486 original size:40 final size:40
Alignment explanation
Indices: 95090419--95090645 Score: 309
Period size: 40 Copynumber: 5.8 Consensus size: 40
95090409 ATAACCACAA
* * * *
95090419 GCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
* *
95090459 GCACGAATGCCTTCGGGTCTTAGCCCGGATATATCATCTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
*
95090499 GCACAAATGCCTTCGGGTCTTAG-CCGGATATATCAACTT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
*
95090538 GCAC-AATG-CTTCGGGTCTTAGCCCGGATATATCAACTT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
* *
95090576 GCACAAATGCCTTCGGGTCTTAGCCCGGATAAAATC-ACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGAT-ATATCAACTC
* *
95090616 GCATAAATGCCTTCGGGACTTAGCCCGGAT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGAT
95090646 GTATTCAAAT
Statistics
Matches: 170, Mismatches: 13, Indels: 8
0.89 0.07 0.04
Matches are distributed among these distances:
37 13 0.08
38 24 0.14
39 22 0.13
40 107 0.63
41 4 0.02
ACGTcount: A:0.24, C:0.28, G:0.22, T:0.26
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
Found at i:95090624 original size:117 final size:119
Alignment explanation
Indices: 95090399--95090645 Score: 338
Period size: 117 Copynumber: 2.1 Consensus size: 119
95090389 TCTTCAGAAT
* * *
95090399 TTAGCCGGATATAACCACAAGCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTCGCACG
1 TTAGCCGGATATAACAACAAGCACAATTGCCTTCGGGTCTTAACCCGGATATAGCAACTCGCACA
* * *
95090464 AATGCCTTCGGGTCTTAGCCCGGATATATCATCTCGCACAAATGCCTTCGGGTC
66 AATGCCTTCGGGTCTTAGCCCGGATAAATCATCTAGCACAAATGCCTTCGGGAC
* ** * * *
95090518 TTAGCCGGATATATCAACTTGCACAA-TG-CTTCGGGTCTTAGCCCGGATATATCAACTTGCACA
1 TTAGCCGGATATAACAACAAGCACAATTGCCTTCGGGTCTTAACCCGGATATAGCAACTCGCACA
*
95090581 AATGCCTTCGGGTCTTAGCCCGGATAAAATCA-CTAGCATAAATGCCTTCGGGAC
66 AATGCCTTCGGGTCTTAGCCCGGAT-AAATCATCTAGCACAAATGCCTTCGGGAC
95090635 TTAGCCCGGAT
1 TTAG-CCGGAT
95090646 GTATTCAAAT
Statistics
Matches: 113, Mismatches: 13, Indels: 5
0.86 0.10 0.04
Matches are distributed among these distances:
117 78 0.69
118 13 0.12
119 22 0.19
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.26
Consensus pattern (119 bp):
TTAGCCGGATATAACAACAAGCACAATTGCCTTCGGGTCTTAACCCGGATATAGCAACTCGCACA
AATGCCTTCGGGTCTTAGCCCGGATAAATCATCTAGCACAAATGCCTTCGGGAC
Found at i:95091990 original size:40 final size:40
Alignment explanation
Indices: 95091899--95092127 Score: 336
Period size: 40 Copynumber: 5.8 Consensus size: 40
95091889 ATAACCACAA
* * *
95091899 GCACAATTGCCTTCGGGTCTTAACCCGG-TATAGCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
* *
95091938 GCACGAATGCCTTCGGGTCTTAGCCCGGATATATCATCTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
*
95091978 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
*
95092018 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
* *
95092058 GCACAAATGCCTTCGGGTCTTAGCCCGGATAAAATC-ACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGAT-ATATCAACTC
* *
95092098 GCATAAATGCCTTCGGGACTTAGCCCGGAT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGAT
95092128 GTATTCAAAT
Statistics
Matches: 176, Mismatches: 12, Indels: 3
0.92 0.06 0.02
Matches are distributed among these distances:
39 25 0.14
40 147 0.84
41 4 0.02
ACGTcount: A:0.24, C:0.28, G:0.21, T:0.26
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
Found at i:95099467 original size:40 final size:40
Alignment explanation
Indices: 95099416--95099645 Score: 336
Period size: 40 Copynumber: 5.8 Consensus size: 40
95099406 ATAACCACAA
* * * *
95099416 GCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
* *
95099456 GCACGAATGCCTTCGGGTCTTAGCCCGGATATATCATCTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
*
95099496 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
*
95099536 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
* *
95099576 GCACAAATGCCTTCGGGTCTTAGCCCGGATAAAATC-ACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGAT-ATATCAACTC
* *
95099616 GCATAAATGCCTTCGGGACTTAGCCCGGAT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGAT
95099646 GTATTCAAAT
Statistics
Matches: 176, Mismatches: 13, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
40 172 0.98
41 4 0.02
ACGTcount: A:0.24, C:0.28, G:0.22, T:0.26
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
Found at i:95103017 original size:56 final size:56
Alignment explanation
Indices: 95102950--95103069 Score: 231
Period size: 56 Copynumber: 2.1 Consensus size: 56
95102940 TATTAGTTTA
95102950 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
*
95103006 TTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
95103062 TTGCCCAT
1 TTGCCCAT
95103070 CATCCCTTGT
Statistics
Matches: 63, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
56 63 1.00
ACGTcount: A:0.23, C:0.23, G:0.09, T:0.45
Consensus pattern (56 bp):
TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
Found at i:95105807 original size:43 final size:41
Alignment explanation
Indices: 95105740--95105894 Score: 175
Period size: 42 Copynumber: 3.7 Consensus size: 41
95105730 AGGCATACCA
* * *
95105740 ATGCCATATCCCAGATATGATCTTACATGTAATCTTATATTG
1 ATGCCATATCCCAGATATGGTCTTACACG-AATCTAATATTG
* * * * *
95105782 ATGCCAATAGCCCAGCTATGGTCTTACACAAAATCTCATATCG
1 ATGCC-ATATCCCAGATATGGTCTTACAC-GAATCTAATATTG
* **
95105825 ATGCCATATCCTAGATATGGTCTTACACGAAGTCTAATGCTG
1 ATGCCATATCCCAGATATGGTCTTACACGAA-TCTAATATTG
95105867 ATGCCATATCCCAGATATGGTCTTACAC
1 ATGCCATATCCCAGATATGGTCTTACAC
95105895 AGAGTCTCAG
Statistics
Matches: 94, Mismatches: 16, Indels: 6
0.81 0.14 0.05
Matches are distributed among these distances:
41 2 0.02
42 58 0.62
43 34 0.36
ACGTcount: A:0.30, C:0.24, G:0.15, T:0.31
Consensus pattern (41 bp):
ATGCCATATCCCAGATATGGTCTTACACGAATCTAATATTG
Found at i:95106073 original size:12 final size:12
Alignment explanation
Indices: 95106056--95106083 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
95106046 AATGCATTAT
95106056 TTACATACAAAC
1 TTACATACAAAC
95106068 TTACATACAAAC
1 TTACATACAAAC
95106080 TTAC
1 TTAC
95106084 CTCGGTACAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.46, C:0.25, G:0.00, T:0.29
Consensus pattern (12 bp):
TTACATACAAAC
Found at i:95110272 original size:13 final size:13
Alignment explanation
Indices: 95110256--95110282 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
95110246 ACATGTTTTC
95110256 CTAAGGGGTTTGA
1 CTAAGGGGTTTGA
95110269 CTAAGGGGTTTGA
1 CTAAGGGGTTTGA
95110282 C
1 C
95110283 ACTCTAATTG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.22, C:0.11, G:0.37, T:0.30
Consensus pattern (13 bp):
CTAAGGGGTTTGA
Found at i:95112966 original size:14 final size:14
Alignment explanation
Indices: 95112947--95112976 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
95112937 AAAAGGGGAG
95112947 TAAGCTTTAAAGCT
1 TAAGCTTTAAAGCT
95112961 TAAGCTTTAAAGCT
1 TAAGCTTTAAAGCT
95112975 TA
1 TA
95112977 GCAAGTTCCT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.37, C:0.13, G:0.13, T:0.37
Consensus pattern (14 bp):
TAAGCTTTAAAGCT
Found at i:95113347 original size:43 final size:42
Alignment explanation
Indices: 95113270--95113424 Score: 168
Period size: 42 Copynumber: 3.7 Consensus size: 42
95113260 TATCATACCA
* * * *
95113270 ATGCCATATCCCAGCTGTGGTCTTACA-TATAATCTCGTATTG
1 ATGCCATATCCCAGATATGGTCTTACACGA-AATCTCATATTG
* * *
95113312 ATGCCAATAGCCCAGCTATGGTCTTACACGAAATCTCATATCG
1 ATGCC-ATATCCCAGATATGGTCTTACACGAAATCTCATATTG
* * * * *
95113355 ATACCATATCCTAGATATGGTTTTACACGAAGTCTCATACTG
1 ATGCCATATCCCAGATATGGTCTTACACGAAATCTCATATTG
*
95113397 ATGCCATATCCAAGATATGGTCTTACAC
1 ATGCCATATCCCAGATATGGTCTTACAC
95113425 ATAGTCTTAG
Statistics
Matches: 95, Mismatches: 16, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
42 60 0.63
43 34 0.36
44 1 0.01
ACGTcount: A:0.29, C:0.25, G:0.15, T:0.31
Consensus pattern (42 bp):
ATGCCATATCCCAGATATGGTCTTACACGAAATCTCATATTG
Found at i:95125223 original size:49 final size:49
Alignment explanation
Indices: 95125170--95125292 Score: 151
Period size: 49 Copynumber: 2.5 Consensus size: 49
95125160 ATCGATGCTG
* * *
95125170 TGTCCCAGACAAGTCTTACACTGACTTTCATATATCGAG-GCCGATGCCA
1 TGTCCTAGACAGGTCTTACACTGACTCTCATATATCG-GTGCCGATGCCA
* * *
95125219 TGTCCTAGACAGGTC-TATCACTGGCTCTCATCTATCGGTGTCGATGCCA
1 TGTCCTAGACAGGTCTTA-CACTGACTCTCATATATCGGTGCCGATGCCA
*
95125268 TGTCCTAAACAGGTCTTACACTGAC
1 TGTCCTAGACAGGTCTTACACTGAC
95125293 ACATAACAAG
Statistics
Matches: 63, Mismatches: 8, Indels: 6
0.82 0.10 0.08
Matches are distributed among these distances:
48 3 0.05
49 58 0.92
50 2 0.03
ACGTcount: A:0.24, C:0.28, G:0.20, T:0.28
Consensus pattern (49 bp):
TGTCCTAGACAGGTCTTACACTGACTCTCATATATCGGTGCCGATGCCA
Found at i:95132990 original size:49 final size:49
Alignment explanation
Indices: 95132892--95133066 Score: 147
Period size: 49 Copynumber: 3.6 Consensus size: 49
95132882 AAATGCCGAC
* * * ** * *
95132892 GCCATATCCCAGACATGGTCTTACATTGGCTAGCACAT-T-AAAGTTGAT
1 GCCATGTCCCAGACA-GGTCTTACACTGACTCTCATATATCAAAGTCGAT
* * * * * *
95132940 GCCGTATCCTAGACAGGACTTACACTGATTTTCATATATCAAAGTCGAT
1 GCCATGTCCCAGACAGGTCTTACACTGACTCTCATATATCAAAGTCGAT
* * * * **
95132989 GCCTTGTCCCAAACAGGTCTTACACTGGCTCTCATCTATCAGTGTCGAT
1 GCCATGTCCCAGACAGGTCTTACACTGACTCTCATATATCAAAGTCGAT
*
95133038 GCCATGTCCCAGACAAGTCTTACACTGAC
1 GCCATGTCCCAGACAGGTCTTACACTGAC
95133067 ACACAACAAG
Statistics
Matches: 100, Mismatches: 25, Indels: 3
0.78 0.20 0.02
Matches are distributed among these distances:
47 15 0.15
48 14 0.14
49 71 0.71
ACGTcount: A:0.27, C:0.27, G:0.18, T:0.29
Consensus pattern (49 bp):
GCCATGTCCCAGACAGGTCTTACACTGACTCTCATATATCAAAGTCGAT
Found at i:95137529 original size:15 final size:16
Alignment explanation
Indices: 95137509--95137538 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
95137499 TTTTGCTTCT
95137509 TCTTCCTTCA-CATCA
1 TCTTCCTTCATCATCA
95137524 TCTTCCTTCATCATC
1 TCTTCCTTCATCATC
95137539 TTAACTTGAA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 10 0.71
16 4 0.29
ACGTcount: A:0.17, C:0.40, G:0.00, T:0.43
Consensus pattern (16 bp):
TCTTCCTTCATCATCA
Found at i:95139487 original size:2 final size:2
Alignment explanation
Indices: 95139482--95139506 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
95139472 GTGAAACAAT
95139482 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
95139507 TTATTAGTAC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:95151415 original size:66 final size:67
Alignment explanation
Indices: 95151274--95151447 Score: 187
Period size: 66 Copynumber: 2.6 Consensus size: 67
95151264 TAGTACCACC
* * * *
95151274 CATGTGACCTAGCCA-ATTTA-TCTCGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATC
1 CATGTGACCTAGCTACATTTATTCTCGTAGCTCTCTTGTCTACATGGTGTACATCAC-TCGAATC
95151337 ACA
65 ACA
* *
95151340 CATGCGACCTAGCTACATTTATCTCTCGTAGCTCTCTTGTCTACATGG-GATACATC-C-CGTAT
1 CATGTGACCTAGCTACATTTAT-TCTCGTAGCTCTCTTGTCTACATGGTG-TACATCACTCGAAT
95151402 CACA
64 CACA
**
95151406 CATGTGACCTAGCTACTACATAGTATCTCGTAGCTCTCTTGT
1 CATGTGACCTAGCTAC-ATTTA-T-TCTCGTAGCTCTCTTGT
95151448 ACACATGATG
Statistics
Matches: 92, Mismatches: 10, Indels: 10
0.82 0.09 0.09
Matches are distributed among these distances:
66 35 0.38
67 8 0.09
68 20 0.22
69 29 0.32
ACGTcount: A:0.22, C:0.28, G:0.16, T:0.34
Consensus pattern (67 bp):
CATGTGACCTAGCTACATTTATTCTCGTAGCTCTCTTGTCTACATGGTGTACATCACTCGAATCA
CA
Found at i:95151425 original size:69 final size:67
Alignment explanation
Indices: 95151292--95151447 Score: 167
Period size: 69 Copynumber: 2.3 Consensus size: 67
95151282 CTAGCCAATT
* * *
95151292 TATCTCGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACACATGCGACCTAGCTACA
1 TATCTCGTAGCTCTCTTGTCTACATGGTGTACATCAC-TCGAATCACACATGCGACCTAGCTACA
95151357 TTTA-
65 --TAG
* * *
95151361 TCTCTCGTAGCTCTCTTGTCTACATGG-GATACATC-C-CGTATCACACATGTGACCTAGCTACT
1 TATCTCGTAGCTCTCTTGTCTACATGGTG-TACATCACTCGAATCACACATGCGACCTAG---CT
95151423 ACATAG
62 ACATAG
95151429 TATCTCGTAGCTCTCTTGT
1 TATCTCGTAGCTCTCTTGT
95151448 ACACATGATG
Statistics
Matches: 75, Mismatches: 7, Indels: 11
0.81 0.08 0.12
Matches are distributed among these distances:
66 18 0.24
67 2 0.03
68 20 0.27
69 35 0.47
ACGTcount: A:0.21, C:0.28, G:0.16, T:0.35
Consensus pattern (67 bp):
TATCTCGTAGCTCTCTTGTCTACATGGTGTACATCACTCGAATCACACATGCGACCTAGCTACAT
AG
Found at i:95160947 original size:40 final size:40
Alignment explanation
Indices: 95160903--95161083 Score: 272
Period size: 40 Copynumber: 4.5 Consensus size: 40
95160893 CAGAAAATCT
*
95160903 GATGAAGTATGTATTAACAGAAAACTATATAATTTATCCG
1 GATGAAGTATGTATTAACAGAAAACTATATAATTTATCCA
* * * *
95160943 GATGAAGTATGTATTAATAGAAAACTGTATAACTTACCCA
1 GATGAAGTATGTATTAACAGAAAACTATATAATTTATCCA
* *
95160983 GATAAAGTATGTATTAATAGAAAACTATATAATTTATCCA
1 GATGAAGTATGTATTAACAGAAAACTATATAATTTATCCA
* * *
95161023 GATGAAGTATGTATTAACAGAAAACTGTATAATTTAACCG
1 GATGAAGTATGTATTAACAGAAAACTATATAATTTATCCA
95161063 GATGAAGTATGTATTAACAGA
1 GATGAAGTATGTATTAACAGA
95161084 TATACTTAAG
Statistics
Matches: 127, Mismatches: 14, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
40 127 1.00
ACGTcount: A:0.44, C:0.09, G:0.15, T:0.31
Consensus pattern (40 bp):
GATGAAGTATGTATTAACAGAAAACTATATAATTTATCCA
Found at i:95161384 original size:17 final size:17
Alignment explanation
Indices: 95161364--95161396 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
95161354 ATAATGAATG
95161364 TTATTAAATTATATTTT
1 TTATTAAATTATATTTT
95161381 TTATTAAATTATATTT
1 TTATTAAATTATATTT
95161397 AATAATAATT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (17 bp):
TTATTAAATTATATTTT
Found at i:95164933 original size:20 final size:19
Alignment explanation
Indices: 95164887--95164935 Score: 71
Period size: 20 Copynumber: 2.5 Consensus size: 19
95164877 AGTAAAAATA
95164887 ATTAAAAATATTAAAATTT
1 ATTAAAAATATTAAAATTT
*
95164906 AGTGAAAAATATTAAAATTTT
1 A-TTAAAAATATTAAAA-TTT
95164927 ATTAAAAAT
1 ATTAAAAAT
95164936 TAGAAAAAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
19 1 0.04
20 21 0.81
21 4 0.15
ACGTcount: A:0.57, C:0.00, G:0.04, T:0.39
Consensus pattern (19 bp):
ATTAAAAATATTAAAATTT
Found at i:95165351 original size:28 final size:28
Alignment explanation
Indices: 95165290--95165360 Score: 65
Period size: 28 Copynumber: 2.5 Consensus size: 28
95165280 TATATTTTTT
* * *
95165290 TTCTA-ATTTTTAATAAGATTTAAATAT
1 TTCTATATTTTTATTAAAATTTAAATAC
*
95165317 TTTTATATTTTTATTAAAATTT-AATAAC
1 TTCTATATTTTTATTAAAATTTAAAT-AC
*
95165345 TTCTATAACTTTTATT
1 TTCTAT-ATTTTTATT
95165361 GATTCTTATT
Statistics
Matches: 35, Mismatches: 6, Indels: 4
0.78 0.13 0.09
Matches are distributed among these distances:
27 7 0.20
28 20 0.57
29 8 0.23
ACGTcount: A:0.37, C:0.06, G:0.01, T:0.56
Consensus pattern (28 bp):
TTCTATATTTTTATTAAAATTTAAATAC
Found at i:95165601 original size:90 final size:88
Alignment explanation
Indices: 95165498--95165719 Score: 265
Period size: 88 Copynumber: 2.5 Consensus size: 88
95165488 CCTTTTGATA
* * * *
95165498 CATTTTGACAGTTCAAGTACCCAATTGCATGTAAAAAAAAAA-GAAGGCATTTAATTG-TT-TTT
1 CATTTTGAAAGTTCAAGTACCCAATTGAATGCAAAAAAAAAATG-A--C-CTTAATTGCTTGTTT
* *
95165560 CTGAAAAAGTTTGAG-GGCTATTTTTATG
62 -TAAAAAAGTTTGAGAGCCT-TTTTTATG
*
95165588 CATTTTGAAAGTTCAAGTACCTAATT-AAGTGCAAAAAAAAAATGACCTTAATTGCTTGTTTTAA
1 CATTTTGAAAGTTCAAGTACCCAATTGAA-TGCAAAAAAAAAATGACCTTAATTGCTTGTTTTAA
95165652 AAAAGTTTGAGAGCCTTTTTTATG
65 AAAAGTTTGAGAGCCTTTTTTATG
* *
95165676 CATTTTGAAAGTTCAAATACCCAATTGAATACAAAAAAAAAATG
1 CATTTTGAAAGTTCAAGTACCCAATTGAATGCAAAAAAAAAATG
95165720 TTTTTTTTTT
Statistics
Matches: 116, Mismatches: 10, Indels: 14
0.83 0.07 0.10
Matches are distributed among these distances:
87 7 0.06
88 62 0.53
89 9 0.08
90 37 0.32
91 1 0.01
ACGTcount: A:0.40, C:0.12, G:0.15, T:0.34
Consensus pattern (88 bp):
CATTTTGAAAGTTCAAGTACCCAATTGAATGCAAAAAAAAAATGACCTTAATTGCTTGTTTTAAA
AAAGTTTGAGAGCCTTTTTTATG
Found at i:95167884 original size:31 final size:30
Alignment explanation
Indices: 95167828--95167885 Score: 73
Period size: 30 Copynumber: 1.9 Consensus size: 30
95167818 TAGCAAAATT
* *
95167828 AACAATAAAACAAGAGTTATACAATATCCA
1 AACAATAAAACAAGAATAATACAATATCCA
95167858 AACAATAACAACAA-AATAATAGCAATAT
1 AACAATAA-AACAAGAATAATA-CAATAT
95167886 AGTAGTGAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
30 13 0.54
31 11 0.46
ACGTcount: A:0.60, C:0.16, G:0.05, T:0.19
Consensus pattern (30 bp):
AACAATAAAACAAGAATAATACAATATCCA
Found at i:95174101 original size:47 final size:47
Alignment explanation
Indices: 95173981--95174102 Score: 165
Period size: 47 Copynumber: 2.6 Consensus size: 47
95173971 TTTACACAAT
* * * * * *
95173981 GATGCCATAGCCCAGTTATGGTCTTACACGTAATCATATATCTCACT
1 GATGCCATATCCCAGATATGGTCTTATACGTAAGCATATATCACACC
*
95174028 GATGTCATATCCCAGATATGGTCTTATACAGT-AGCATATATCACACC
1 GATGCCATATCCCAGATATGGTCTTATAC-GTAAGCATATATCACACC
95174075 GATGCCATATCCCAGATATGGTCTTATA
1 GATGCCATATCCCAGATATGGTCTTATA
95174103 TAGAAATCAC
Statistics
Matches: 66, Mismatches: 8, Indels: 2
0.87 0.11 0.03
Matches are distributed among these distances:
47 64 0.97
48 2 0.03
ACGTcount: A:0.30, C:0.24, G:0.16, T:0.31
Consensus pattern (47 bp):
GATGCCATATCCCAGATATGGTCTTATACGTAAGCATATATCACACC
Found at i:95174121 original size:7 final size:7
Alignment explanation
Indices: 95174109--95174144 Score: 72
Period size: 7 Copynumber: 5.1 Consensus size: 7
95174099 TATATAGAAA
95174109 TCACTTG
1 TCACTTG
95174116 TCACTTG
1 TCACTTG
95174123 TCACTTG
1 TCACTTG
95174130 TCACTTG
1 TCACTTG
95174137 TCACTTG
1 TCACTTG
95174144 T
1 T
95174145 AGCCAAAGCT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 29 1.00
ACGTcount: A:0.14, C:0.28, G:0.14, T:0.44
Consensus pattern (7 bp):
TCACTTG
Found at i:95174178 original size:31 final size:31
Alignment explanation
Indices: 95174143--95174351 Score: 310
Period size: 31 Copynumber: 6.7 Consensus size: 31
95174133 CTTGTCACTT
* *
95174143 GTAGCCAAAGCTACCACTATTCACTGATCAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
* ** *
95174174 GTAGCTGGTGCTACCATTTTTCACTGATCAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
*
95174205 GTAGCCGGAGCTACCACTTTTCACTGATCAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
*
95174236 GTAGCCGAAGCTACCACTTTTCACTGATTAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
*
95174267 GTAGCAGAAGCTACCACTTTTCACTGATCAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
* *
95174298 GTAGCTGAAACTACCACTTTTCACTGATCAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
*
95174329 GTAGCTGAAGCTACCACTTTTCA
1 GTAGCCGAAGCTACCACTTTTCA
95174352 GTTGTCATTT
Statistics
Matches: 162, Mismatches: 16, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 162 1.00
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.28
Consensus pattern (31 bp):
GTAGCCGAAGCTACCACTTTTCACTGATCAG
Found at i:95174435 original size:50 final size:50
Alignment explanation
Indices: 95174329--95174505 Score: 230
Period size: 50 Copynumber: 3.5 Consensus size: 50
95174319 CACTGATCAG
* * * *
95174329 GTAGCTGAAGCTACCACTTTTCAGTTGTCATTTG-CCATTGATCAGATAAGT
1 GTAGCCGAAGCTATCACTTATCACTT-TCATTTGTCC-TTGATCAGATAAGT
* * *
95174380 GTAGCCGAAGCTATCACTTATCACTTTCACTTGTCCTTAATCAGATAAAT
1 GTAGCCGAAGCTATCACTTATCACTTTCATTTGTCCTTGATCAGATAAGT
* * * *
95174430 GTAGCCGATGTTATTACTTATCACTTTCATTTGTCCTTGACCAGATAAGT
1 GTAGCCGAAGCTATCACTTATCACTTTCATTTGTCCTTGATCAGATAAGT
95174480 GTAGCCGAAGCTATCACTTATCACTT
1 GTAGCCGAAGCTATCACTTATCACTT
95174506 GTTTCCATGG
Statistics
Matches: 108, Mismatches: 17, Indels: 3
0.84 0.13 0.02
Matches are distributed among these distances:
50 84 0.78
51 24 0.22
ACGTcount: A:0.27, C:0.22, G:0.16, T:0.36
Consensus pattern (50 bp):
GTAGCCGAAGCTATCACTTATCACTTTCATTTGTCCTTGATCAGATAAGT
Found at i:95176861 original size:8 final size:8
Alignment explanation
Indices: 95176848--95176874 Score: 54
Period size: 8 Copynumber: 3.4 Consensus size: 8
95176838 GAATCAAGAA
95176848 TTTTTTAT
1 TTTTTTAT
95176856 TTTTTTAT
1 TTTTTTAT
95176864 TTTTTTAT
1 TTTTTTAT
95176872 TTT
1 TTT
95176875 CCGGACTACC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 19 1.00
ACGTcount: A:0.11, C:0.00, G:0.00, T:0.89
Consensus pattern (8 bp):
TTTTTTAT
Found at i:95178905 original size:47 final size:47
Alignment explanation
Indices: 95178785--95178906 Score: 156
Period size: 47 Copynumber: 2.6 Consensus size: 47
95178775 TTTACACAAT
* * * * * *
95178785 GATGCCATAGCCCAGTTATGGTCTTACACGTAATCACATATCTCACT
1 GATGCCATATCCCAGATATGGTCTTATACGTAAGCACATATCACACC
* *
95178832 GATGTCATATCCCAGATATGGTCTTATACAGT-AGCATATATCACACC
1 GATGCCATATCCCAGATATGGTCTTATAC-GTAAGCACATATCACACC
95178879 GATGCCATATCCCAGATATGGTCTTATA
1 GATGCCATATCCCAGATATGGTCTTATA
95178907 TAGAAATCAC
Statistics
Matches: 65, Mismatches: 9, Indels: 2
0.86 0.12 0.03
Matches are distributed among these distances:
47 63 0.97
48 2 0.03
ACGTcount: A:0.30, C:0.25, G:0.16, T:0.30
Consensus pattern (47 bp):
GATGCCATATCCCAGATATGGTCTTATACGTAAGCACATATCACACC
Found at i:95178974 original size:31 final size:31
Alignment explanation
Indices: 95178939--95179147 Score: 310
Period size: 31 Copynumber: 6.7 Consensus size: 31
95178929 CTTGTCACTT
* *
95178939 GTAGCCAAAGCTACCACTATTCACTGATCAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
* ** *
95178970 GTAGCTGGTGCTACCATTTTTCACTGATCAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
*
95179001 GTAGCCGGAGCTACCACTTTTCACTGATCAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
*
95179032 GTAGCCGAAGCTACCACTTTTCACTGATTAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
*
95179063 GTAGCAGAAGCTACCACTTTTCACTGATCAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
* *
95179094 GTAGCTGAAACTACCACTTTTCACTGATCAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
*
95179125 GTAGCTGAAGCTACCACTTTTCA
1 GTAGCCGAAGCTACCACTTTTCA
95179148 GTTGTCATTT
Statistics
Matches: 162, Mismatches: 16, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 162 1.00
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.28
Consensus pattern (31 bp):
GTAGCCGAAGCTACCACTTTTCACTGATCAG
Found at i:95179224 original size:50 final size:50
Alignment explanation
Indices: 95179125--95179301 Score: 221
Period size: 50 Copynumber: 3.5 Consensus size: 50
95179115 CACTGATCAG
* * * * * *
95179125 GTAGCTGAAGCTACCACTTTTCAGTTGTCATTTG-CCATTGATCAGATAAGT
1 GTAGCCGAAGCTATCACTTATCACTT-TCACTTGTCC-TTAATCAGATAAGT
*
95179176 GTAGCCGAAGGTATCACTTATCACTTTCACTTGTCCTTAATCAGATAAGT
1 GTAGCCGAAGCTATCACTTATCACTTTCACTTGTCCTTAATCAGATAAGT
* * * * *
95179226 GTAGCCGAAGTTATTACTTATCACTTTCATTTGTCCTTGACCAGATAAGT
1 GTAGCCGAAGCTATCACTTATCACTTTCACTTGTCCTTAATCAGATAAGT
95179276 GTAGCCGAAGCTATCACTTATCACTT
1 GTAGCCGAAGCTATCACTTATCACTT
95179302 GTTTTCATGG
Statistics
Matches: 111, Mismatches: 14, Indels: 3
0.87 0.11 0.02
Matches are distributed among these distances:
50 88 0.79
51 23 0.21
ACGTcount: A:0.27, C:0.21, G:0.17, T:0.35
Consensus pattern (50 bp):
GTAGCCGAAGCTATCACTTATCACTTTCACTTGTCCTTAATCAGATAAGT
Found at i:95181565 original size:42 final size:43
Alignment explanation
Indices: 95181509--95181590 Score: 116
Period size: 42 Copynumber: 1.9 Consensus size: 43
95181499 ATGATTTACG
95181509 TGTAAGACTATGTCTAAGACA-TCGACATCG-TATTTGATTTTT
1 TGTAAGACTATGTCTAAGACAGT-GACATCGATATTTGATTTTT
*
95181551 TGTAAGACCT-TGTCTAGGACAGTGACATCGATATTTGATT
1 TGTAAGA-CTATGTCTAAGACAGTGACATCGATATTTGATT
95181591 ACATGTAAGA
Statistics
Matches: 36, Mismatches: 1, Indels: 5
0.86 0.02 0.12
Matches are distributed among these distances:
42 24 0.67
43 12 0.33
ACGTcount: A:0.28, C:0.15, G:0.20, T:0.38
Consensus pattern (43 bp):
TGTAAGACTATGTCTAAGACAGTGACATCGATATTTGATTTTT
Found at i:95181600 original size:43 final size:43
Alignment explanation
Indices: 95181504--95181602 Score: 114
Period size: 42 Copynumber: 2.3 Consensus size: 43
95181494 GACTTATGAT
*
95181504 TTACGTGTAAGA-CTATGTCTAAGACATCGACATCGTATTTGA
1 TTACATGTAAGACCTATGTCTAAGACATCGACATCGTATTTGA
*** *
95181546 TTTTTTGTAAGACCT-TGTCTAGGACAGT-GACATCGATATTTGA
1 TTACATGTAAGACCTATGTCTAAGACA-TCGACATCG-TATTTGA
95181589 TTACATGTAAGACC
1 TTACATGTAAGACC
95181603 ACGTTTGGGA
Statistics
Matches: 47, Mismatches: 7, Indels: 5
0.80 0.12 0.08
Matches are distributed among these distances:
42 26 0.55
43 21 0.45
ACGTcount: A:0.29, C:0.16, G:0.19, T:0.35
Consensus pattern (43 bp):
TTACATGTAAGACCTATGTCTAAGACATCGACATCGTATTTGA
Found at i:95185267 original size:48 final size:46
Alignment explanation
Indices: 95185205--95185472 Score: 189
Period size: 48 Copynumber: 5.6 Consensus size: 46
95185195 TGATATGTGT
*
95185205 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCAAGATATTTAA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATA--TAA
* * ** * * *
95185253 GCCAGTGTAAGACATGTCTGGGACATGCATTGGGATTGAGACGA-GA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGA-TATAA
* *
95185299 GCTAGTGTAAGACATGTCTGGGACATACATCGGCCTCGCGATATACAA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATAT--AA
* * * * *
95185347 GCTAGTGTAAGACCTGTCTGGGCCATGGCATCGACAC-CGATAGATGAGA
1 GCTAGTGTAAGACATGTCTGGGACAT-GCATCGGC-CTCGAGATAT-A-A
* * * * * **
95185396 GCTAGTGTAAGACCTGACTAGGACATGGAATCAGCCTCGCTATATGAAA
1 GCTAGTGTAAGACATGTCTGGGACAT-GCATCGGCCTCGAGATAT--AA
* *
95185445 GCCAGTGTAAGACCGTGTCTGGGACATG
1 GCTAGTGTAAGA-CATGTCTGGGACATG
95185473 GCGTTGGCAT
Statistics
Matches: 172, Mismatches: 38, Indels: 19
0.75 0.17 0.08
Matches are distributed among these distances:
45 1 0.01
46 35 0.20
48 62 0.36
49 61 0.35
50 13 0.08
ACGTcount: A:0.28, C:0.20, G:0.29, T:0.23
Consensus pattern (46 bp):
GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATATAA
Found at i:95185366 original size:94 final size:94
Alignment explanation
Indices: 95185205--95185472 Score: 288
Period size: 94 Copynumber: 2.8 Consensus size: 94
95185195 TGATATGTGT
* ** * *
95185205 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCAAGATATTTAAGCCAGTGTAAGACATGT
1 GCTAGTGTAAGACATGTCTGGGACATACATCGGCCTCGCGATA-TAAAGCCAGTGTAAGACCTGT
* ** **
95185270 CTGGGACATGCATTGGGATTG-AGACGAGA
65 CTGGGACATGCATCGACACCGAAGACGAGA
*
95185299 GCTAGTGTAAGACATGTCTGGGACATACATCGGCCTCGCGATATACAAGCTAGTGTAAGACCTGT
1 GCTAGTGTAAGACATGTCTGGGACATACATCGGCCTCGCGATATA-AAGCCAGTGTAAGACCTGT
* *
95185364 CTGGGCCATGGCATCGACACCGATAGATGAGA
65 CTGGGACAT-GCATCGACACCGA-AGACGAGA
* * * * *
95185396 GCTAGTGTAAGACCTGACTAGGACATGGA-ATCAGCCTCGCTATATGAAAGCCAGTGTAAGACCG
1 GCTAGTGTAAGACATGTCTGGGACAT--ACATCGGCCTCGCGATAT-AAAGCCAGTGTAAGACC-
95185460 TGTCTGGGACATG
62 TGTCTGGGACATG
95185473 GCGTTGGCAT
Statistics
Matches: 146, Mismatches: 20, Indels: 12
0.82 0.11 0.07
Matches are distributed among these distances:
93 1 0.01
94 65 0.45
95 7 0.05
97 30 0.21
98 30 0.21
99 13 0.09
ACGTcount: A:0.28, C:0.20, G:0.29, T:0.23
Consensus pattern (94 bp):
GCTAGTGTAAGACATGTCTGGGACATACATCGGCCTCGCGATATAAAGCCAGTGTAAGACCTGTC
TGGGACATGCATCGACACCGAAGACGAGA
Found at i:95186707 original size:20 final size:21
Alignment explanation
Indices: 95186668--95186707 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
95186658 GTTATAATGA
* *
95186668 CCACACGGGCGTGTTGCCCTT
1 CCACACGAGCATGTTGCCCTT
95186689 CCACACGAGCATG-TGCCCT
1 CCACACGAGCATGTTGCCCT
95186708 GTTTCAAGAG
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 6 0.35
21 11 0.65
ACGTcount: A:0.15, C:0.40, G:0.25, T:0.20
Consensus pattern (21 bp):
CCACACGAGCATGTTGCCCTT
Found at i:95189104 original size:14 final size:13
Alignment explanation
Indices: 95189085--95189116 Score: 55
Period size: 14 Copynumber: 2.4 Consensus size: 13
95189075 TTAGATTTGG
95189085 AATTAATTAATCTT
1 AATTAATTAA-CTT
95189099 AATTAATTAACTT
1 AATTAATTAACTT
95189112 AATTA
1 AATTA
95189117 TGGCTTAATT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
13 8 0.44
14 10 0.56
ACGTcount: A:0.47, C:0.06, G:0.00, T:0.47
Consensus pattern (13 bp):
AATTAATTAACTT
Found at i:95189648 original size:217 final size:216
Alignment explanation
Indices: 95189233--95189661 Score: 634
Period size: 217 Copynumber: 2.0 Consensus size: 216
95189223 ATTATTGTTA
* *
95189233 TTTAACTCCTTAAGCCCTACCTTAATTAAAACTCTATAGCGATTAGACTTTTACAATTTAGTCCT
1 TTTAACTCCTTAAGCCATACCTTAATTAAAACTCTATAACGATTAGACTTTTACAATTTAGTCCT
* *
95189298 TGAGCTTTAATAACTATCTTATCAGCTAAATTACTTGACCACTCTTTATTATAGTCACATATTAA
66 TAAGCTTTAATAACTAGCTTATCAGCTAAATTACTTGACCACTCTTTATTATAGTCACATATTAA
* *** *
95189363 CTCTGTAAATATTCATATTTTATATTTTTGGACTCGGTTTATGGAAATAAGGTTTCGAAATCGTA
131 CTCTGTAAATATTCATAATTTATATTTAAAGACTCGGTTCATGGAAATAAGGTTTCGAAATCGTA
95189428 TTTT-TCGATATCACTGAGTTG
196 TTTTCT-GATATCACTGAGTTG
*
95189449 TTTAACTCTTTAAGCCATACCTTAATTAAAACTCTATAACGATTAGACTTTTACAATTTAGTCCT
1 TTTAACTCCTTAAGCCATACCTTAATTAAAACTCTATAACGATTAGACTTTTACAATTTAGTCCT
* * *
95189514 TAAGCTTTAATTAACTAGCTTAT-GGACTAAATTACTTGACCACTCTTTATTATATTCATATATT
66 TAAGCTTTAA-TAACTAGCTTATCAG-CTAAATTACTTGACCACTCTTTATTATAGTCACATATT
* *
95189578 AACT-TCGTAAATATTCATAATTTATATTTAAAGACTCGGTTCA-GGAAAATGAGGTTTTGAAA-
129 AACTCT-GTAAATATTCATAATTTATATTTAAAGACTCGGTTCATGG-AAATAAGGTTTCGAAAT
95189640 CTGTATTTTCTGATATCACTGA
192 C-GTATTTTCTGATATCACTGA
95189662 AAATCGGGTC
Statistics
Matches: 192, Mismatches: 15, Indels: 11
0.88 0.07 0.05
Matches are distributed among these distances:
216 76 0.40
217 115 0.60
218 1 0.01
ACGTcount: A:0.32, C:0.16, G:0.11, T:0.41
Consensus pattern (216 bp):
TTTAACTCCTTAAGCCATACCTTAATTAAAACTCTATAACGATTAGACTTTTACAATTTAGTCCT
TAAGCTTTAATAACTAGCTTATCAGCTAAATTACTTGACCACTCTTTATTATAGTCACATATTAA
CTCTGTAAATATTCATAATTTATATTTAAAGACTCGGTTCATGGAAATAAGGTTTCGAAATCGTA
TTTTCTGATATCACTGAGTTG
Found at i:95191241 original size:54 final size:54
Alignment explanation
Indices: 95191148--95191265 Score: 132
Period size: 54 Copynumber: 2.2 Consensus size: 54
95191138 TAAAGTTAGG
* *
95191148 ACACACGACCGTGTCCCAACCCGTGTGTCTGACAGTGTAACTCACTGACTTGAC
1 ACACACGACCGTGTCCCAACCCGTGTGTCTGACAGTGTAACCCACTAACTTGAC
* ** * *
95191202 ACACACGACCGTGTCGCAGGCCGTGTG-CTAGCCCA-TGTAACCCACTAACTTGAG
1 ACACACGACCGTGTCCCAACCCGTGTGTCT-G-ACAGTGTAACCCACTAACTTGAC
*
95191256 ACACATGACC
1 ACACACGACC
95191266 ATGTTTCAAA
Statistics
Matches: 54, Mismatches: 8, Indels: 4
0.82 0.12 0.06
Matches are distributed among these distances:
53 2 0.04
54 50 0.93
55 2 0.04
ACGTcount: A:0.25, C:0.34, G:0.21, T:0.19
Consensus pattern (54 bp):
ACACACGACCGTGTCCCAACCCGTGTGTCTGACAGTGTAACCCACTAACTTGAC
Found at i:95194031 original size:23 final size:23
Alignment explanation
Indices: 95193997--95194041 Score: 72
Period size: 23 Copynumber: 2.0 Consensus size: 23
95193987 ATGATTTTTT
* *
95193997 TACAATTTGTTTGGTAATTAATC
1 TACAATTAGTTTAGTAATTAATC
95194020 TACAATTAGTTTAGTAATTAAT
1 TACAATTAGTTTAGTAATTAAT
95194042 TATAATCAAC
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.36, C:0.07, G:0.11, T:0.47
Consensus pattern (23 bp):
TACAATTAGTTTAGTAATTAATC
Found at i:95194070 original size:15 final size:16
Alignment explanation
Indices: 95194049--95194092 Score: 56
Period size: 16 Copynumber: 2.8 Consensus size: 16
95194039 AATTATAATC
95194049 AACTTAATTAATC-TA
1 AACTTAATTAATCTTA
*
95194064 TAA-TTAATTAAACTTA
1 -AACTTAATTAATCTTA
95194080 AACTTAATTAATC
1 AACTTAATTAATC
95194093 AATTTGGTGG
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
15 11 0.46
16 13 0.54
ACGTcount: A:0.48, C:0.11, G:0.00, T:0.41
Consensus pattern (16 bp):
AACTTAATTAATCTTA
Found at i:95194088 original size:16 final size:16
Alignment explanation
Indices: 95194049--95194090 Score: 52
Period size: 15 Copynumber: 2.7 Consensus size: 16
95194039 AATTATAATC
*
95194049 AACTTAATTAATCTAT
1 AACTTAATTAAACTAT
95194065 AA-TTAATTAAACT-T
1 AACTTAATTAAACTAT
95194079 AAACTTAATTAA
1 -AACTTAATTAA
95194091 TCAATTTGGT
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
14 1 0.04
15 12 0.52
16 10 0.43
ACGTcount: A:0.50, C:0.10, G:0.00, T:0.40
Consensus pattern (16 bp):
AACTTAATTAAACTAT
Found at i:95195479 original size:33 final size:33
Alignment explanation
Indices: 95195439--95195504 Score: 132
Period size: 33 Copynumber: 2.0 Consensus size: 33
95195429 ATATTTTTGG
95195439 TATTTAGGCCTTAGGATTAAATATAAATAAACT
1 TATTTAGGCCTTAGGATTAAATATAAATAAACT
95195472 TATTTAGGCCTTAGGATTAAATATAAATAAACT
1 TATTTAGGCCTTAGGATTAAATATAAATAAACT
95195505 AAGTGTTTTT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 33 1.00
ACGTcount: A:0.42, C:0.09, G:0.12, T:0.36
Consensus pattern (33 bp):
TATTTAGGCCTTAGGATTAAATATAAATAAACT
Found at i:95196984 original size:17 final size:17
Alignment explanation
Indices: 95196955--95197001 Score: 53
Period size: 18 Copynumber: 2.8 Consensus size: 17
95196945 TAGATATGAT
*
95196955 TTTTA-TTTTTTTCTTA
1 TTTTATTTTTTTTCTAA
95196971 -TTTATTTTTATTTCTAA
1 TTTTATTTTT-TTTCTAA
95196988 TTTTATTTTCTTTT
1 TTTTATTTT-TTTT
95197002 TAGGTATTTT
Statistics
Matches: 26, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
15 4 0.15
16 4 0.15
17 6 0.23
18 11 0.42
19 1 0.04
ACGTcount: A:0.15, C:0.06, G:0.00, T:0.79
Consensus pattern (17 bp):
TTTTATTTTTTTTCTAA
Found at i:95198565 original size:92 final size:92
Alignment explanation
Indices: 95198316--95198579 Score: 307
Period size: 92 Copynumber: 2.9 Consensus size: 92
95198306 ATATACGTAA
* * * * **
95198316 CATAGCTAACGTACATGCGGTACAGTGCAATGCAGTAAACGGCTATACCAGTGACTTTGCAG-TT
1 CATAGCTAACGTACATGCAGTACAGTGCAATGCGGTGAACCGCTATACCAGT-AAATTGCAGCTT
95198380 AAACTGCCAGATCAGATAAGTGTACATAG
65 -AACTGCCAGATCAGATAAGTGTACATAG
* * * * ** **
95198409 CATAGCTAACATACATGCATTACAATGCAATGCGGTGAACCACTATACCAAAAAATTGTGGCTTA
1 CATAGCTAACGTACATGCAGTACAGTGCAATGCGGTGAACCGCTATACCAGTAAATTGCAGCTTA
*
95198474 ACTGCGAGATCAGATAA-TGGTACATAG
66 ACTGCCAGATCAGATAAGT-GTACATAG
* * *
95198501 CATAGCTAACGTACATGCAGTACAGTGCAATGCGGTGAACCGCTATACCGGTAAATTACCGCTTA
1 CATAGCTAACGTACATGCAGTACAGTGCAATGCGGTGAACCGCTATACCAGTAAATTGCAGCTTA
* *
95198566 ACTGCTAAATCAGA
66 ACTGCCAGATCAGA
95198580 GTAGAATCAG
Statistics
Matches: 142, Mismatches: 27, Indels: 5
0.82 0.16 0.03
Matches are distributed among these distances:
91 1 0.01
92 97 0.68
93 44 0.31
ACGTcount: A:0.35, C:0.21, G:0.20, T:0.23
Consensus pattern (92 bp):
CATAGCTAACGTACATGCAGTACAGTGCAATGCGGTGAACCGCTATACCAGTAAATTGCAGCTTA
ACTGCCAGATCAGATAAGTGTACATAG
Found at i:95199015 original size:21 final size:21
Alignment explanation
Indices: 95198986--95199039 Score: 63
Period size: 21 Copynumber: 2.6 Consensus size: 21
95198976 GGAGGCACAC
* * *
95198986 AGCCGTGTGGACCGGTGACAA
1 AGCCATGTGAACCGGAGACAA
*
95199007 AGCCATGTGAACCGGAGACAT
1 AGCCATGTGAACCGGAGACAA
*
95199028 GGCCATGTGAAC
1 AGCCATGTGAAC
95199040 AGGCCGTATA
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 28 1.00
ACGTcount: A:0.28, C:0.24, G:0.33, T:0.15
Consensus pattern (21 bp):
AGCCATGTGAACCGGAGACAA
Found at i:95199780 original size:6 final size:5
Alignment explanation
Indices: 95199753--95199832 Score: 53
Period size: 5 Copynumber: 15.8 Consensus size: 5
95199743 TCCAAAAGAG
95199753 AAAAT AAAAT AAAAT AGAAAT AACAAT -AAAT -AAAT -AAAT -AAAT AATAACTT
1 AAAAT AAAAT AAAAT A-AAAT AA-AAT AAAAT AAAAT AAAAT AAAAT AA-AA--T
* *
95199804 AAAACT -AAAT AAAAT AAAAC ACAAT AAAA
1 AAAA-T AAAAT AAAAT AAAAT AAAAT AAAA
95199833 GGGCTCCCAA
Statistics
Matches: 63, Mismatches: 5, Indels: 14
0.77 0.06 0.17
Matches are distributed among these distances:
4 16 0.25
5 31 0.49
6 11 0.17
7 2 0.03
8 3 0.05
ACGTcount: A:0.72, C:0.06, G:0.01, T:0.20
Consensus pattern (5 bp):
AAAAT
Found at i:95199821 original size:15 final size:14
Alignment explanation
Indices: 95199753--95199832 Score: 65
Period size: 15 Copynumber: 5.3 Consensus size: 14
95199743 TCCAAAAGAG
95199753 AAAATAAAATAAAAT
1 AAAATAAAAT-AAAT
95199768 AGAAATAACAATAAAT
1 A-AAATAA-AATAAAT
95199784 -AAAT-AAATAAAT
1 AAAATAAAATAAAT
95199796 AATAACTTAAAACTAAAT
1 AA-AA--TAAAA-TAAAT
*
95199814 AAAATAAAACACAAT
1 AAAATAAAATA-AAT
95199829 AAAA
1 AAAA
95199833 GGGCTCCCAA
Statistics
Matches: 55, Mismatches: 1, Indels: 18
0.74 0.01 0.24
Matches are distributed among these distances:
12 7 0.13
13 2 0.04
14 7 0.13
15 13 0.24
16 11 0.20
17 8 0.15
18 7 0.13
ACGTcount: A:0.72, C:0.06, G:0.01, T:0.20
Consensus pattern (14 bp):
AAAATAAAATAAAT
Found at i:95202552 original size:21 final size:22
Alignment explanation
Indices: 95202501--95202563 Score: 74
Period size: 22 Copynumber: 2.9 Consensus size: 22
95202491 GCCCTGTGAT
*
95202501 GAGGCACACGCCCGTGTGAAAG
1 GAGGCACACGCCCGTGTGGAAG
* * *
95202523 GAAGCACACGGCCGTGTGGCA-
1 GAGGCACACGCCCGTGTGGAAG
*
95202544 GAGGCACACGCCCATGTGGA
1 GAGGCACACGCCCGTGTGGA
95202564 CCAGGGACAT
Statistics
Matches: 33, Mismatches: 8, Indels: 1
0.79 0.19 0.02
Matches are distributed among these distances:
21 16 0.48
22 17 0.52
ACGTcount: A:0.25, C:0.29, G:0.37, T:0.10
Consensus pattern (22 bp):
GAGGCACACGCCCGTGTGGAAG
Found at i:95206144 original size:21 final size:21
Alignment explanation
Indices: 95206118--95206157 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
95206108 TTTGTGAAGG
**
95206118 GAGGCACACGGCCGTGTGGTA
1 GAGGCACACACCCGTGTGGTA
95206139 GAGGCACACACCCGTGTGG
1 GAGGCACACACCCGTGTGG
95206158 ACCGGGGACA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.20, C:0.28, G:0.40, T:0.12
Consensus pattern (21 bp):
GAGGCACACACCCGTGTGGTA
Found at i:95206833 original size:22 final size:21
Alignment explanation
Indices: 95206802--95206842 Score: 64
Period size: 21 Copynumber: 1.9 Consensus size: 21
95206792 CCCCAAAATG
95206802 AAAAGAAAAGAAAAGAAAACCA
1 AAAAGAAAAG-AAAGAAAACCA
*
95206824 AAAAGCAAAGAAAGAAAAC
1 AAAAGAAAAGAAAGAAAAC
95206843 GTCTAGAAGA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 9 0.50
22 9 0.50
ACGTcount: A:0.76, C:0.10, G:0.15, T:0.00
Consensus pattern (21 bp):
AAAAGAAAAGAAAGAAAACCA
Found at i:95206918 original size:15 final size:15
Alignment explanation
Indices: 95206898--95206927 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
95206888 AATATTAACT
*
95206898 TAAAACTAAATAAAA
1 TAAAACAAAATAAAA
95206913 TAAAACAAAATAAAA
1 TAAAACAAAATAAAA
95206928 AGGCTCCCAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.77, C:0.07, G:0.00, T:0.17
Consensus pattern (15 bp):
TAAAACAAAATAAAA
Done.