Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A06
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 115140250
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2234201 characters in sequence are not A, C, G, or T
File 279 of 345
Found at i:95211553 original size:25 final size:25
Alignment explanation
Indices: 95211524--95211584 Score: 86
Period size: 25 Copynumber: 2.4 Consensus size: 25
95211514 TATGCATCAT
* * *
95211524 ATTGACTATTTGACCGATATGTCTG
1 ATTGACTATTCGACCAAAATGTCTG
*
95211549 ATTGACTATTCGATCAAAATGTCTG
1 ATTGACTATTCGACCAAAATGTCTG
95211574 ATTGACTATTC
1 ATTGACTATTC
95211585 AATTGGAAGG
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
25 32 1.00
ACGTcount: A:0.28, C:0.16, G:0.16, T:0.39
Consensus pattern (25 bp):
ATTGACTATTCGACCAAAATGTCTG
Found at i:95214926 original size:56 final size:56
Alignment explanation
Indices: 95214835--95214954 Score: 222
Period size: 56 Copynumber: 2.1 Consensus size: 56
95214825 CTGTAAGTAC
95214835 TATAGAATATATGTCATCAAGAGATAAATTATATTTTAAAAATTATGCTATAACAAA
1 TATA-AATATATGTCATCAAGAGATAAATTATATTTTAAAAATTATGCTATAACAAA
*
95214892 TATAAATATATGTCATCAAGAGATAGATTATATTTTAAAAATTATGCTATAACAAA
1 TATAAATATATGTCATCAAGAGATAAATTATATTTTAAAAATTATGCTATAACAAA
95214948 TATAAAT
1 TATAAAT
95214955 GATAATTTAG
Statistics
Matches: 62, Mismatches: 1, Indels: 1
0.97 0.02 0.02
Matches are distributed among these distances:
56 58 0.94
57 4 0.06
ACGTcount: A:0.49, C:0.07, G:0.08, T:0.36
Consensus pattern (56 bp):
TATAAATATATGTCATCAAGAGATAAATTATATTTTAAAAATTATGCTATAACAAA
Found at i:95216999 original size:11 final size:11
Alignment explanation
Indices: 95216979--95217009 Score: 53
Period size: 11 Copynumber: 2.8 Consensus size: 11
95216969 TCAAATCATC
*
95216979 AAGAATAAATT
1 AAGAACAAATT
95216990 AAGAACAAATT
1 AAGAACAAATT
95217001 AAGAACAAA
1 AAGAACAAA
95217010 ACTAGATGCA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 19 1.00
ACGTcount: A:0.68, C:0.06, G:0.10, T:0.16
Consensus pattern (11 bp):
AAGAACAAATT
Found at i:95224065 original size:40 final size:40
Alignment explanation
Indices: 95223972--95224188 Score: 284
Period size: 40 Copynumber: 5.5 Consensus size: 40
95223962 AAGCCAAGTA
* * *
95223972 CCTTCGGGATTTA-ACCGGATATAGCT-ACTCGCTC-AATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
* *
95224010 CCTTCGGGACATAGCCCGGATATAGTAACTCGCACCAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
95224050 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
95224090 CCTTCGGGACTTAGCCCGGATGTAATAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
95224130 CCTTCGGGACTTAGCCC-GA-ACTAGTCACTAGCGCA-AAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACT--CGCACAAATG
95224170 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
95224189 TTATCATCCA
Statistics
Matches: 161, Mismatches: 11, Indels: 11
0.88 0.06 0.06
Matches are distributed among these distances:
38 12 0.07
39 25 0.16
40 119 0.74
41 5 0.03
ACGTcount: A:0.25, C:0.29, G:0.23, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:95232189 original size:40 final size:40
Alignment explanation
Indices: 95232096--95232313 Score: 293
Period size: 40 Copynumber: 5.5 Consensus size: 40
95232086 AAGCCAAGTA
* * *
95232096 CCTTCGGGATTTA-ACCGGATATAGCT-ACTCGCTC-AATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
* *
95232134 CCTTCGGGACATAGCCCGGATATAGTAACTCGCACCAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
95232174 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
95232214 CCTTCGGGACTTAGCCCGGATGTAATAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
95232254 CCTTCGGGACTTAGCCCGGA-ACTAGTCACTAGCGCA-AAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACT--CGCACAAATG
95232295 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
95232314 TTATCATCCA
Statistics
Matches: 163, Mismatches: 11, Indels: 9
0.89 0.06 0.05
Matches are distributed among these distances:
38 12 0.07
39 17 0.10
40 106 0.65
41 24 0.15
42 4 0.02
ACGTcount: A:0.25, C:0.29, G:0.23, T:0.22
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:95243212 original size:14 final size:15
Alignment explanation
Indices: 95243184--95243214 Score: 55
Period size: 14 Copynumber: 2.1 Consensus size: 15
95243174 CAATAATAGC
95243184 ATTACTTACCTTTAT
1 ATTACTTACCTTTAT
95243199 ATTACTTA-CTTTAT
1 ATTACTTACCTTTAT
95243213 AT
1 AT
95243215 ATATATGTAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 8 0.50
15 8 0.50
ACGTcount: A:0.29, C:0.16, G:0.00, T:0.55
Consensus pattern (15 bp):
ATTACTTACCTTTAT
Found at i:95243824 original size:7 final size:7
Alignment explanation
Indices: 95243814--95243846 Score: 52
Period size: 6 Copynumber: 5.0 Consensus size: 7
95243804 AAAACCCTAA
95243814 TTTTCTC
1 TTTTCTC
95243821 TTTT-TC
1 TTTTCTC
95243827 TTTTCTC
1 TTTTCTC
95243834 TTTTCT-
1 TTTTCTC
95243840 TTTTCTC
1 TTTTCTC
95243847 CCAATTCCTT
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
6 12 0.50
7 12 0.50
ACGTcount: A:0.00, C:0.24, G:0.00, T:0.76
Consensus pattern (7 bp):
TTTTCTC
Found at i:95243931 original size:8 final size:8
Alignment explanation
Indices: 95243918--95243961 Score: 70
Period size: 8 Copynumber: 5.5 Consensus size: 8
95243908 CTTTTATGTT
95243918 TTATTATA
1 TTATTATA
*
95243926 TTATTAAA
1 TTATTATA
95243934 TTATTATA
1 TTATTATA
*
95243942 TTAATATA
1 TTATTATA
95243950 TTATTATA
1 TTATTATA
95243958 TTAT
1 TTAT
95243962 ATACTTAAGT
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
8 32 1.00
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (8 bp):
TTATTATA
Found at i:95247010 original size:47 final size:47
Alignment explanation
Indices: 95246850--95247113 Score: 294
Period size: 48 Copynumber: 5.8 Consensus size: 47
95246840 AAAATGAAAA
* *
95246850 AACGTGGTGCTAAGTAGATATACCACGATTACACATATTGATACATGT
1 AACGTGGTGCTAAGTGGATATACCACGGTTACACATATTGATACAT-T
* * * *
95246898 AACATGGTGCTAAGTGCATATACCACGATTACACATATTGATACAAGT
1 AACGTGGTGCTAAGTGGATATACCACGGTTACACATATTGATAC-ATT
* * * *
95246946 AACGTAGTGCTAAGTGGATATGCCACGGTTACATATATTGATTCATT
1 AACGTGGTGCTAAGTGGATATACCACGGTTACACATATTGATACATT
*
95246993 AACGTGGTGCTAAGTGGATATACCACGGTTA-A-ACA-TG-TA-A-T
1 AACGTGGTGCTAAGTGGATATACCACGGTTACACATATTGATACATT
* * *
95247034 ---GTGGTGCTAAGTGGATATGCCACGGTTACATATATTGATTCATT
1 AACGTGGTGCTAAGTGGATATACCACGGTTACACATATTGATACATT
* * *
95247078 AGCATGGTGCTAAGTGGATATACCACGGTTAAACAT
1 AACGTGGTGCTAAGTGGATATACCACGGTTACACAT
95247114 GTAACGTGGT
Statistics
Matches: 183, Mismatches: 23, Indels: 21
0.81 0.10 0.09
Matches are distributed among these distances:
38 27 0.15
39 1 0.01
40 2 0.01
41 3 0.02
42 2 0.01
43 2 0.01
44 3 0.02
45 2 0.01
46 1 0.01
47 60 0.33
48 79 0.43
49 1 0.01
ACGTcount: A:0.33, C:0.16, G:0.22, T:0.30
Consensus pattern (47 bp):
AACGTGGTGCTAAGTGGATATACCACGGTTACACATATTGATACATT
Found at i:95247047 original size:38 final size:38
Alignment explanation
Indices: 95246992--95247191 Score: 256
Period size: 38 Copynumber: 5.0 Consensus size: 38
95246982 ATTGATTCAT
95246992 TAACGTGGTGCTAAGTGGATATACCACGGTTAAACATG
1 TAACGTGGTGCTAAGTGGATATACCACGGTTAAACATG
* * *
95247030 TAATGTGGTGCTAAGTGGATATGCCACGGTTACATATATTG
1 TAACGTGGTGCTAAGTGGATATACCACGGTTA-A-ACA-TG
*
95247071 ATTCATTAGCATGGTGCTAAGTGGATATACCACGGTTAAACATG
1 --T-A--A-CGTGGTGCTAAGTGGATATACCACGGTTAAACATG
*
95247115 TAACGTGGTGCTAAGTGGATATACCACAGTTAAACATG
1 TAACGTGGTGCTAAGTGGATATACCACGGTTAAACATG
* *
95247153 TAACGTGGTGCTAAGTGGATATGCCACGGTTATACATG
1 TAACGTGGTGCTAAGTGGATATACCACGGTTAAACATG
95247191 T
1 T
95247192 TAATTTGAAA
Statistics
Matches: 141, Mismatches: 12, Indels: 18
0.82 0.07 0.11
Matches are distributed among these distances:
38 99 0.70
39 2 0.01
40 2 0.01
41 3 0.02
42 1 0.01
43 1 0.01
44 3 0.02
45 2 0.01
46 2 0.01
47 26 0.18
ACGTcount: A:0.30, C:0.15, G:0.26, T:0.29
Consensus pattern (38 bp):
TAACGTGGTGCTAAGTGGATATACCACGGTTAAACATG
Found at i:95247095 original size:85 final size:85
Alignment explanation
Indices: 95246944--95247146 Score: 352
Period size: 85 Copynumber: 2.4 Consensus size: 85
95246934 ATTGATACAA
* *
95246944 GTAACGTAGTGCTAAGTGGATATGCCACGGTTACATATATTGATTCATTAACGTGGTGCTAAGTG
1 GTAACGTGGTGCTAAGTGGATATGCCACGGTTACATATATTGATTCATTAACATGGTGCTAAGTG
95247009 GATATACCACGGTTAAACAT
66 GATATACCACGGTTAAACAT
* *
95247029 GTAATGTGGTGCTAAGTGGATATGCCACGGTTACATATATTGATTCATTAGCATGGTGCTAAGTG
1 GTAACGTGGTGCTAAGTGGATATGCCACGGTTACATATATTGATTCATTAACATGGTGCTAAGTG
95247094 GATATACCACGGTTAAACAT
66 GATATACCACGGTTAAACAT
* *
95247114 GTAACGTGGTGCTAAGTGGATATACCACAGTTA
1 GTAACGTGGTGCTAAGTGGATATGCCACGGTTA
95247147 AACATGTAAC
Statistics
Matches: 111, Mismatches: 7, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
85 111 1.00
ACGTcount: A:0.30, C:0.15, G:0.25, T:0.31
Consensus pattern (85 bp):
GTAACGTGGTGCTAAGTGGATATGCCACGGTTACATATATTGATTCATTAACATGGTGCTAAGTG
GATATACCACGGTTAAACAT
Found at i:95250465 original size:15 final size:15
Alignment explanation
Indices: 95250445--95250486 Score: 66
Period size: 15 Copynumber: 2.8 Consensus size: 15
95250435 GCTATAAATG
95250445 GGATTTCCTTATCAT
1 GGATTTCCTTATCAT
* *
95250460 GGATTTCTTTATCTT
1 GGATTTCCTTATCAT
95250475 GGATTTCCTTAT
1 GGATTTCCTTAT
95250487 TCTGGGCTTC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 24 1.00
ACGTcount: A:0.17, C:0.17, G:0.14, T:0.52
Consensus pattern (15 bp):
GGATTTCCTTATCAT
Found at i:95252808 original size:48 final size:47
Alignment explanation
Indices: 95252737--95253024 Score: 166
Period size: 47 Copynumber: 6.5 Consensus size: 47
95252727 ATGAAAAAAT
95252737 GTGGTGCTAAGTGGATATACCACAATTACACATATTG-ATACAAGTAAC
1 GTGGTGCTAAGTGGATATACCACAATTACACATATTGAAT-C-AGTAAC
* * * *
95252785 GTGGTGCTAAGTGGATATGCCACAGTTACATATATTGAATCATTAAC
1 GTGGTGCTAAGTGGATATACCACAATTACACATATTGAATCAGTAAC
* ** * *
95252832 ATGGTGCTAAGTGGATATACCACGGTT--A-A-A---CAT--GTAAT
1 GTGGTGCTAAGTGGATATACCACAATTACACATATTGAATCAGTAAC
* ** * * *
95252870 GTGGTGCTAAGTGGATATTCCACGGTTACATATATTGATTC-GTTAAT
1 GTGGTGCTAAGTGGATATACCACAATTACACATATTGAATCAG-TAAC
* ** *
95252917 GTGGTGCTAAGTGGATATACCGCGGTT--A-A-A---CAT--GTAAC
1 GTGGTGCTAAGTGGATATACCACAATTACACATATTGAATCAGTAAC
* ** * * *
95252955 GTGGTGCTAAGTGGATATGCCACGGTTACATATATTGATTCATTAAC
1 GTGGTGCTAAGTGGATATACCACAATTACACATATTGAATCAGTAAC
* *
95253002 GTGATGCTAAGTGAATATACCAC
1 GTGGTGCTAAGTGGATATACCAC
95253025 GGTTAAACAT
Statistics
Matches: 194, Mismatches: 27, Indels: 39
0.75 0.10 0.15
Matches are distributed among these distances:
38 56 0.29
39 1 0.01
40 5 0.03
41 2 0.01
42 2 0.01
43 2 0.01
44 2 0.01
45 4 0.02
46 1 0.01
47 82 0.42
48 35 0.18
49 2 0.01
ACGTcount: A:0.31, C:0.15, G:0.23, T:0.31
Consensus pattern (47 bp):
GTGGTGCTAAGTGGATATACCACAATTACACATATTGAATCAGTAAC
Found at i:95252884 original size:38 final size:38
Alignment explanation
Indices: 95252828--95253074 Score: 224
Period size: 38 Copynumber: 6.0 Consensus size: 38
95252818 ATTGAATCAT
*
95252828 TAACATGGTGCTAAGTGGATATACCACGGTTAAACATG
1 TAACGTGGTGCTAAGTGGATATACCACGGTTAAACATG
* * *
95252866 TAATGTGGTGCTAAGTGGATATTCCACGGTTACATATATTGATTCG
1 TAACGTGGTGCTAAGTGGATATACCACGGTT--A-A-A--CA-T-G
* *
95252912 TTAATGTGGTGCTAAGTGGATATACCGCGGTTAAACATG
1 -TAACGTGGTGCTAAGTGGATATACCACGGTTAAACATG
* *
95252951 TAACGTGGTGCTAAGTGGATATGCCACGGTTACATATATTG
1 TAACGTGGTGCTAAGTGGATATACCACGGTTA-A-ACA-TG
* *
95252992 ATTCATTAACGTGATGCTAAGTGAATATACCACGGTTAAACATG
1 ------TAACGTGGTGCTAAGTGGATATACCACGGTTAAACATG
* *
95253036 TAACGTGGTGCTAAGTGGATATGCCACGGTTATACATG
1 TAACGTGGTGCTAAGTGGATATACCACGGTTAAACATG
95253074 T
1 T
95253075 TAATTTGAAA
Statistics
Matches: 172, Mismatches: 19, Indels: 36
0.76 0.08 0.16
Matches are distributed among these distances:
38 92 0.53
39 2 0.01
40 4 0.02
41 4 0.02
42 1 0.01
43 1 0.01
44 4 0.02
45 4 0.02
46 2 0.01
47 58 0.34
ACGTcount: A:0.30, C:0.15, G:0.25, T:0.31
Consensus pattern (38 bp):
TAACGTGGTGCTAAGTGGATATACCACGGTTAAACATG
Found at i:95252928 original size:85 final size:85
Alignment explanation
Indices: 95252780--95253067 Score: 486
Period size: 85 Copynumber: 3.4 Consensus size: 85
95252770 ATTGATACAA
* * *
95252780 GTAACGTGGTGCTAAGTGGATATGCCACAGTTACATATATTGAATCATTAACATGGTGCTAAGTG
1 GTAACGTGGTGCTAAGTGGATATGCCACGGTTACATATATTGATTCATTAACGTGGTGCTAAGTG
95252845 GATATACCACGGTTAAACAT
66 GATATACCACGGTTAAACAT
* * * *
95252865 GTAATGTGGTGCTAAGTGGATATTCCACGGTTACATATATTGATTCGTTAATGTGGTGCTAAGTG
1 GTAACGTGGTGCTAAGTGGATATGCCACGGTTACATATATTGATTCATTAACGTGGTGCTAAGTG
*
95252930 GATATACCGCGGTTAAACAT
66 GATATACCACGGTTAAACAT
*
95252950 GTAACGTGGTGCTAAGTGGATATGCCACGGTTACATATATTGATTCATTAACGTGATGCTAAGTG
1 GTAACGTGGTGCTAAGTGGATATGCCACGGTTACATATATTGATTCATTAACGTGGTGCTAAGTG
*
95253015 AATATACCACGGTTAAACAT
66 GATATACCACGGTTAAACAT
95253035 GTAACGTGGTGCTAAGTGGATATGCCACGGTTA
1 GTAACGTGGTGCTAAGTGGATATGCCACGGTTA
95253068 TACATGTTAA
Statistics
Matches: 188, Mismatches: 15, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
85 188 1.00
ACGTcount: A:0.30, C:0.15, G:0.25, T:0.31
Consensus pattern (85 bp):
GTAACGTGGTGCTAAGTGGATATGCCACGGTTACATATATTGATTCATTAACGTGGTGCTAAGTG
GATATACCACGGTTAAACAT
Found at i:95252943 original size:47 final size:47
Alignment explanation
Indices: 95252870--95253029 Score: 185
Period size: 47 Copynumber: 3.6 Consensus size: 47
95252860 AACATGTAAT
* *
95252870 GTGGTGCTAAGTGGATATTCCACGGTTACATATATTGATTCGTTAAT
1 GTGGTGCTAAGTGGATATACCACGGTTACATATATTGATTCGTTAAC
* *
95252917 GTGGTGCTAAGTGGATATACCGCGGTT--A-A-A--CA-T-G-TAAC
1 GTGGTGCTAAGTGGATATACCACGGTTACATATATTGATTCGTTAAC
* *
95252955 GTGGTGCTAAGTGGATATGCCACGGTTACATATATTGATTCATTAAC
1 GTGGTGCTAAGTGGATATACCACGGTTACATATATTGATTCGTTAAC
* *
95253002 GTGATGCTAAGTGAATATACCACGGTTA
1 GTGGTGCTAAGTGGATATACCACGGTTA
95253030 AACATGTAAC
Statistics
Matches: 93, Mismatches: 11, Indels: 18
0.76 0.09 0.15
Matches are distributed among these distances:
38 28 0.30
39 1 0.01
40 2 0.02
41 2 0.02
42 1 0.01
43 1 0.01
44 2 0.02
45 2 0.02
47 54 0.58
ACGTcount: A:0.28, C:0.14, G:0.25, T:0.33
Consensus pattern (47 bp):
GTGGTGCTAAGTGGATATACCACGGTTACATATATTGATTCGTTAAC
Found at i:95253608 original size:19 final size:20
Alignment explanation
Indices: 95253584--95253621 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
95253574 CCCTGTTCTG
*
95253584 AATTGTA-AAAATCATTAAA
1 AATTGTACAAAATAATTAAA
95253603 AATTGTACAAAATAATTAA
1 AATTGTACAAAATAATTAA
95253622 GGAACATAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 7 0.41
20 10 0.59
ACGTcount: A:0.58, C:0.05, G:0.05, T:0.32
Consensus pattern (20 bp):
AATTGTACAAAATAATTAAA
Found at i:95258931 original size:27 final size:27
Alignment explanation
Indices: 95258891--95258980 Score: 121
Period size: 27 Copynumber: 3.4 Consensus size: 27
95258881 ACATGTTAGA
**
95258891 AAATGGAAAACTTTGTGGCAATCTATG
1 AAATGGAAGCCTTTGTGGCAATCTATG
95258918 AAATGGAAGCCTTTGTGGCAATCTATG
1 AAATGGAAGCCTTTGTGGCAATCTATG
* *
95258945 AAATGGAAGCTTTTGTGGCGTATCTA--
1 AAATGGAAGCCTTTGTGGC-AATCTATG
95258971 AAATGGAAGC
1 AAATGGAAGC
95258981 ATTCGTGGAA
Statistics
Matches: 58, Mismatches: 4, Indels: 3
0.89 0.06 0.05
Matches are distributed among these distances:
26 10 0.17
27 43 0.74
28 5 0.09
ACGTcount: A:0.33, C:0.12, G:0.26, T:0.29
Consensus pattern (27 bp):
AAATGGAAGCCTTTGTGGCAATCTATG
Found at i:95262921 original size:44 final size:44
Alignment explanation
Indices: 95262871--95263025 Score: 169
Period size: 42 Copynumber: 3.6 Consensus size: 44
95262861 TATGTGCTTT
* * *
95262871 CGTGTAAGACCACGTCTGGGATGTTGGCATCGATATATGATTTA
1 CGTGTAAGACCACATCTGGGACGTTGGCATCGATATTTGATTTA
* * *
95262915 CGTGTAAGACCATATCTGGGACATTGTCATCG-TATTTGATTT-
1 CGTGTAAGACCACATCTGGGACGTTGGCATCGATATTTGATTTA
* *
95262957 CGTGTAAGACC-CTATCTAGGATAG-TGGCATCGATATTTGA--TA
1 CGTGTAAGACCAC-ATCTGGGA-CGTTGGCATCGATATTTGATTTA
*
95262999 CATGTAAGACCACATCTGGGACGTTGG
1 CGTGTAAGACCACATCTGGGACGTTGG
95263026 TATTGTACGA
Statistics
Matches: 91, Mismatches: 14, Indels: 14
0.76 0.12 0.12
Matches are distributed among these distances:
41 2 0.02
42 45 0.49
43 17 0.19
44 27 0.30
ACGTcount: A:0.26, C:0.17, G:0.25, T:0.32
Consensus pattern (44 bp):
CGTGTAAGACCACATCTGGGACGTTGGCATCGATATTTGATTTA
Found at i:95266711 original size:2 final size:2
Alignment explanation
Indices: 95266704--95266741 Score: 67
Period size: 2 Copynumber: 19.0 Consensus size: 2
95266694 TTCCTTGAGT
*
95266704 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA AA GA GA
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
95266742 TCCCTATTCC
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.53, C:0.00, G:0.47, T:0.00
Consensus pattern (2 bp):
GA
Found at i:95272177 original size:22 final size:20
Alignment explanation
Indices: 95272131--95272185 Score: 76
Period size: 20 Copynumber: 2.7 Consensus size: 20
95272121 CTCTAAAAAA
*
95272131 TTATACTTTTTTAAATTAAT
1 TTATATTTTTTTAAATTAAT
95272151 TTATATTTTTTTAAA-TAAT
1 TTATATTTTTTTAAATTAAT
95272170 TATATATATTTTTTAA
1 T-TATAT-TTTTTTAA
95272186 TTTATATCTT
Statistics
Matches: 32, Mismatches: 1, Indels: 3
0.89 0.03 0.08
Matches are distributed among these distances:
19 5 0.16
20 19 0.59
21 8 0.25
ACGTcount: A:0.36, C:0.02, G:0.00, T:0.62
Consensus pattern (20 bp):
TTATATTTTTTTAAATTAAT
Found at i:95288645 original size:32 final size:30
Alignment explanation
Indices: 95288609--95288685 Score: 82
Period size: 32 Copynumber: 2.4 Consensus size: 30
95288599 GGATTCGGTA
* *
95288609 ATATATATATATGAGTGGGGTTGTATATACAT
1 ATATATATATATAAGT-GGG-TGAATATACAT
*
95288641 ATATATGTATACATAAGTGGGTGAATATACAT
1 ATATA--TATATATAAGTGGGTGAATATACAT
95288673 ATATAATATATAT
1 ATAT-ATATATAT
95288686 TAATGGATTT
Statistics
Matches: 38, Mismatches: 4, Indels: 7
0.78 0.08 0.14
Matches are distributed among these distances:
31 6 0.16
32 19 0.50
33 4 0.11
34 9 0.24
ACGTcount: A:0.40, C:0.04, G:0.17, T:0.39
Consensus pattern (30 bp):
ATATATATATATAAGTGGGTGAATATACAT
Found at i:95290583 original size:33 final size:34
Alignment explanation
Indices: 95290544--95290611 Score: 86
Period size: 33 Copynumber: 2.0 Consensus size: 34
95290534 TCTTAACCAC
*
95290544 ATTGAAACTAATTCATC-ACTTA-CCATATTGGTA
1 ATTGAAA-TAATGCATCAACTTAGCCATATTGGTA
* *
95290577 ATTGAAATCATGCATCAACTTAGCCATATTTGTA
1 ATTGAAATAATGCATCAACTTAGCCATATTGGTA
95290611 A
1 A
95290612 CACCCCTAAC
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
32 7 0.23
33 12 0.40
34 11 0.37
ACGTcount: A:0.37, C:0.18, G:0.10, T:0.35
Consensus pattern (34 bp):
ATTGAAATAATGCATCAACTTAGCCATATTGGTA
Found at i:95306104 original size:13 final size:13
Alignment explanation
Indices: 95306086--95306110 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
95306076 GAATTAATAT
95306086 GTGTGAAAATTTC
1 GTGTGAAAATTTC
95306099 GTGTGAAAATTT
1 GTGTGAAAATTT
95306111 TATCGTTTGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.04, G:0.24, T:0.40
Consensus pattern (13 bp):
GTGTGAAAATTTC
Found at i:95307042 original size:13 final size:13
Alignment explanation
Indices: 95307024--95307051 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
95307014 TACTAGGTGT
95307024 TTATTATTTGATG
1 TTATTATTTGATG
95307037 TTATTATTTGATG
1 TTATTATTTGATG
95307050 TT
1 TT
95307052 TTGTATTATA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.21, C:0.00, G:0.14, T:0.64
Consensus pattern (13 bp):
TTATTATTTGATG
Found at i:95310262 original size:12 final size:12
Alignment explanation
Indices: 95310242--95310274 Score: 57
Period size: 12 Copynumber: 2.8 Consensus size: 12
95310232 GACTCTATGC
95310242 GGCCGTGTGGTA
1 GGCCGTGTGGTA
*
95310254 GGCCCTGTGGTA
1 GGCCGTGTGGTA
95310266 GGCCGTGTG
1 GGCCGTGTG
95310275 CAATGACACG
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.06, C:0.21, G:0.48, T:0.24
Consensus pattern (12 bp):
GGCCGTGTGGTA
Found at i:95310403 original size:17 final size:18
Alignment explanation
Indices: 95310381--95310414 Score: 61
Period size: 17 Copynumber: 1.9 Consensus size: 18
95310371 CCAAATTGGA
95310381 TGTGTGGG-CCACACAGC
1 TGTGTGGGCCCACACAGC
95310398 TGTGTGGGCCCACACAG
1 TGTGTGGGCCCACACAG
95310415 GCACCCCACA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 8 0.50
18 8 0.50
ACGTcount: A:0.18, C:0.29, G:0.35, T:0.18
Consensus pattern (18 bp):
TGTGTGGGCCCACACAGC
Found at i:95317914 original size:46 final size:46
Alignment explanation
Indices: 95317862--95318037 Score: 155
Period size: 46 Copynumber: 3.8 Consensus size: 46
95317852 ATATTGGGCA
95317862 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
* * *
95317908 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAC---G
* *
95317953 CATCCGAGA-TCGTTGAGTGGAGTCCGAGTTCACCTATGGATGCGAACG
1 --TCCGA-ACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
* * ** * **
95318001 CCCGAGCTAATTGAGTTGAGTCTGAGTTTGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
95318038 GCGGGTTACA
Statistics
Matches: 102, Mismatches: 17, Indels: 22
0.72 0.12 0.16
Matches are distributed among these distances:
42 3 0.03
43 4 0.04
45 3 0.03
46 56 0.55
47 26 0.25
48 3 0.03
50 4 0.04
51 3 0.03
ACGTcount: A:0.22, C:0.20, G:0.30, T:0.28
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
Found at i:95317968 original size:93 final size:93
Alignment explanation
Indices: 95317858--95318028 Score: 263
Period size: 93 Copynumber: 1.8 Consensus size: 93
95317848 TCGGATATTG
* * * **
95317858 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTGGAGTCCGAGTTCACCTATGGATGCGAACGCCCGAACTAATTGAG
95317923 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
*
95317951 GGCATCCGAGA-TCGTTGAGTGGAGTCCGAGTTCACCTATGGATGCGAACGCCCGAGCTAATTGA
1 GGCATCCGA-ACTCGTTGAGTGGAGTCCGAGTTCACCTATGGATGCGAACGCCCGAACTAATTGA
*
95318015 GTTGAGTCTGAGTT
65 GTTGAGTCCGAGTT
95318029 TGCTTATGGG
Statistics
Matches: 70, Mismatches: 7, Indels: 2
0.89 0.09 0.03
Matches are distributed among these distances:
93 69 0.99
94 1 0.01
ACGTcount: A:0.22, C:0.20, G:0.30, T:0.27
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTGGAGTCCGAGTTCACCTATGGATGCGAACGCCCGAACTAATTGAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:95320580 original size:73 final size:73
Alignment explanation
Indices: 95320475--95320627 Score: 261
Period size: 73 Copynumber: 2.1 Consensus size: 73
95320465 CAAATTTATT
* *
95320475 TTATTTTATTTGGATTTTTAACATTTTTTTTCTTTCTCTTCTCCCCTTCTCCAATTTCCCCAAAA
1 TTATTTTATTTAGACTTTTAACATTTTTTTTCTTTCTCTTCTCCCCTTCTCCAATTTCCCCAAAA
*
95320540 TTTTGCCA
66 TTCTGCCA
* *
95320548 TTATTTTATTTAGACTTTTAATATTTTTTTTCTTTCTCTTCTCCCCTTCTCCAATTTCCCTAAAA
1 TTATTTTATTTAGACTTTTAACATTTTTTTTCTTTCTCTTCTCCCCTTCTCCAATTTCCCCAAAA
95320613 TTCTGCCA
66 TTCTGCCA
95320621 TTATTTT
1 TTATTTT
95320628 TGACGTTTTG
Statistics
Matches: 75, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
73 75 1.00
ACGTcount: A:0.18, C:0.24, G:0.03, T:0.55
Consensus pattern (73 bp):
TTATTTTATTTAGACTTTTAACATTTTTTTTCTTTCTCTTCTCCCCTTCTCCAATTTCCCCAAAA
TTCTGCCA
Found at i:95323049 original size:27 final size:27
Alignment explanation
Indices: 95323019--95323073 Score: 110
Period size: 27 Copynumber: 2.0 Consensus size: 27
95323009 TATGTGCCGG
95323019 GTATGAACTAATATGTTACTTACTTGA
1 GTATGAACTAATATGTTACTTACTTGA
95323046 GTATGAACTAATATGTTACTTACTTGA
1 GTATGAACTAATATGTTACTTACTTGA
95323073 G
1 G
95323074 GTAAGTTATG
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.33, C:0.11, G:0.16, T:0.40
Consensus pattern (27 bp):
GTATGAACTAATATGTTACTTACTTGA
Found at i:95323207 original size:22 final size:22
Alignment explanation
Indices: 95323194--95323237 Score: 70
Period size: 22 Copynumber: 2.0 Consensus size: 22
95323184 TGTCATGAAT
*
95323194 AACTCTTTTATATGTGTATATA
1 AACTCTTTTATATGTATATATA
*
95323216 AACTCTTTTATATGTGTATATA
1 AACTCTTTTATATGTATATATA
95323238 TGATGAGGTA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.32, C:0.09, G:0.09, T:0.50
Consensus pattern (22 bp):
AACTCTTTTATATGTATATATA
Found at i:95336202 original size:20 final size:20
Alignment explanation
Indices: 95336179--95336243 Score: 51
Period size: 20 Copynumber: 3.2 Consensus size: 20
95336169 TGTATAATCT
95336179 TACAGAAAGGGTGATGGTTA
1 TACAGAAAGGGTGATGGTTA
** * **
95336199 TACATTATGGGTGTATAATCT-
1 TACAGAAAGGGTG-ATGGT-TA
*
95336220 TATAGAAAGGGTGATGGTTA
1 TACAGAAAGGGTGATGGTTA
95336240 TACA
1 TACA
95336244 TTATGTCCCA
Statistics
Matches: 30, Mismatches: 12, Indels: 6
0.62 0.25 0.12
Matches are distributed among these distances:
19 1 0.03
20 16 0.53
21 12 0.40
22 1 0.03
ACGTcount: A:0.34, C:0.06, G:0.28, T:0.32
Consensus pattern (20 bp):
TACAGAAAGGGTGATGGTTA
Found at i:95336213 original size:41 final size:41
Alignment explanation
Indices: 95336167--95336248 Score: 155
Period size: 41 Copynumber: 2.0 Consensus size: 41
95336157 TAAAAATAAA
95336167 GGTGTATAATCTTACAGAAAGGGTGATGGTTATACATTATG
1 GGTGTATAATCTTACAGAAAGGGTGATGGTTATACATTATG
*
95336208 GGTGTATAATCTTATAGAAAGGGTGATGGTTATACATTATG
1 GGTGTATAATCTTACAGAAAGGGTGATGGTTATACATTATG
95336249 TCCCATAAAA
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
41 40 1.00
ACGTcount: A:0.32, C:0.06, G:0.27, T:0.35
Consensus pattern (41 bp):
GGTGTATAATCTTACAGAAAGGGTGATGGTTATACATTATG
Found at i:95338134 original size:86 final size:86
Alignment explanation
Indices: 95337989--95338156 Score: 300
Period size: 86 Copynumber: 2.0 Consensus size: 86
95337979 CTTTTAACAA
*
95337989 CCCAATATGAGTCTAATCTTAAACTATTATATAGAATTGTTCAAACAGAAAAGCATTTAATTTAG
1 CCCAATATGAGTCTAATCTTAAACCATTATATAGAATTGTTCAAACAGAAAAGCATTTAATTTAG
95338054 AGCATCATAGCAATTGAATAG
66 AGCATCATAGCAATTGAATAG
* * *
95338075 CCCAATATGAGTCTAATTTTAAACCATTATATATAATTGTTCAAACAGTAAAGCATTTAATTTAG
1 CCCAATATGAGTCTAATCTTAAACCATTATATAGAATTGTTCAAACAGAAAAGCATTTAATTTAG
95338140 AGCATCATAGCAATTGA
66 AGCATCATAGCAATTGA
95338157 GCATAATGTA
Statistics
Matches: 78, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
86 78 1.00
ACGTcount: A:0.41, C:0.14, G:0.12, T:0.33
Consensus pattern (86 bp):
CCCAATATGAGTCTAATCTTAAACCATTATATAGAATTGTTCAAACAGAAAAGCATTTAATTTAG
AGCATCATAGCAATTGAATAG
Found at i:95339637 original size:14 final size:14
Alignment explanation
Indices: 95339620--95339653 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
95339610 AGCATTTGTA
95339620 CCAAATCAACCATT
1 CCAAATCAACCATT
*
95339634 CCAAATGAACCATT
1 CCAAATCAACCATT
*
95339648 CAAAAT
1 CCAAAT
95339654 GCATATAAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.47, C:0.29, G:0.03, T:0.21
Consensus pattern (14 bp):
CCAAATCAACCATT
Found at i:95342329 original size:18 final size:18
Alignment explanation
Indices: 95342306--95342343 Score: 76
Period size: 18 Copynumber: 2.1 Consensus size: 18
95342296 AAAAATCACT
95342306 TAACAAAACTTTAATATC
1 TAACAAAACTTTAATATC
95342324 TAACAAAACTTTAATATC
1 TAACAAAACTTTAATATC
95342342 TA
1 TA
95342344 TCATCAAGCT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.50, C:0.16, G:0.00, T:0.34
Consensus pattern (18 bp):
TAACAAAACTTTAATATC
Found at i:95345630 original size:42 final size:42
Alignment explanation
Indices: 95345583--95345784 Score: 167
Period size: 42 Copynumber: 4.6 Consensus size: 42
95345573 TGTGGTTTCG
* *
95345583 TGTAAGACCATATCTGGAATATGGCATCGATATGTGATCCCA
1 TGTAAGACCATATCTGGAATATGGCATCAATATGTGATCTCA
* *
95345625 TGTAAGACCATATCTGGGATATGGCATTGGCATCAATATGTGATTTCG
1 TGTAAGACCATATCT-GGA-AT---A-TGGCATCAATATGTGATCTCA
* * * * * *
95345673 TGTAAGACTATGTCTGGGACATGGCATCGATATGAGA-CATTC-
1 TGTAAGACCATATCTGGAATATGGCATCAATATGTGATC--TCA
* * *
95345715 TGTAGGACCATAGCTAGG-CTATTGGCATCAATATGTGATCTCA
1 TGTAAGACCATATCT-GGAATA-TGGCATCAATATGTGATCTCA
*
95345758 TGTAAGACCATATCTGGGATATGGCAT
1 TGTAAGACCATATCTGGAATATGGCAT
95345785 TGGCATCTTA
Statistics
Matches: 125, Mismatches: 22, Indels: 26
0.72 0.13 0.15
Matches are distributed among these distances:
42 51 0.41
43 37 0.30
44 3 0.02
46 1 0.01
47 3 0.02
48 30 0.24
ACGTcount: A:0.29, C:0.17, G:0.24, T:0.30
Consensus pattern (42 bp):
TGTAAGACCATATCTGGAATATGGCATCAATATGTGATCTCA
Found at i:95347856 original size:39 final size:39
Alignment explanation
Indices: 95347802--95347879 Score: 156
Period size: 39 Copynumber: 2.0 Consensus size: 39
95347792 TATATGTGTG
95347802 ATGATAACTATGTTTTAAATGAGAATTGGTAAGTTGGGC
1 ATGATAACTATGTTTTAAATGAGAATTGGTAAGTTGGGC
95347841 ATGATAACTATGTTTTAAATGAGAATTGGTAAGTTGGGC
1 ATGATAACTATGTTTTAAATGAGAATTGGTAAGTTGGGC
95347880 TTCACAAAGT
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 39 1.00
ACGTcount: A:0.33, C:0.05, G:0.26, T:0.36
Consensus pattern (39 bp):
ATGATAACTATGTTTTAAATGAGAATTGGTAAGTTGGGC
Found at i:95351284 original size:34 final size:34
Alignment explanation
Indices: 95351222--95351287 Score: 87
Period size: 34 Copynumber: 1.9 Consensus size: 34
95351212 TATTAAATCA
*
95351222 CATACTATATAACATGGGGATTCACATATTATGT
1 CATACTATATAACATGGGGACTCACATATTATGT
** * *
95351256 CATACTATATGGCATGGGGGCTCGCATATTAT
1 CATACTATATAACATGGGGACTCACATATTAT
95351288 TCTCTAAGGG
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
34 27 1.00
ACGTcount: A:0.30, C:0.17, G:0.20, T:0.33
Consensus pattern (34 bp):
CATACTATATAACATGGGGACTCACATATTATGT
Found at i:95351506 original size:3 final size:3
Alignment explanation
Indices: 95351498--95351527 Score: 51
Period size: 3 Copynumber: 9.7 Consensus size: 3
95351488 AAAAATGAAA
95351498 AAG AAG AAG AAG AAG AAG AAG AAG AGAG AA
1 AAG AAG AAG AAG AAG AAG AAG AAG A-AG AA
95351528 TTTTGAGAGT
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
3 23 0.88
4 3 0.12
ACGTcount: A:0.67, C:0.00, G:0.33, T:0.00
Consensus pattern (3 bp):
AAG
Found at i:95352447 original size:29 final size:31
Alignment explanation
Indices: 95352400--95352467 Score: 77
Period size: 30 Copynumber: 2.3 Consensus size: 31
95352390 CAACTTAACT
** * * *
95352400 AAATTTTCTAAAACTTTTAGAGTC-TAATTA
1 AAATTTTCTAAAAAATTTAAAGACATAATCA
95352430 AAATTTTC-AAAAAATTTAAAGACATAATCA
1 AAATTTTCTAAAAAATTTAAAGACATAATCA
95352460 AAATTTTC
1 AAATTTTC
95352468 CAAACTTAGG
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
29 11 0.34
30 21 0.66
ACGTcount: A:0.47, C:0.10, G:0.04, T:0.38
Consensus pattern (31 bp):
AAATTTTCTAAAAAATTTAAAGACATAATCA
Found at i:95356515 original size:49 final size:48
Alignment explanation
Indices: 95356443--95356757 Score: 204
Period size: 47 Copynumber: 6.7 Consensus size: 48
95356433 ATAAGTTACC
* * * *
95356443 GATGCCATGTCCTAAACATGGTCTTACACTGGCTATCATCATCGACGTT
1 GATG-CATGTCCCAGACATGGTCTTACACTGGCTATCATCATCTACGCT
* * *
95356492 GATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCAT-ATATACGTGCT
1 GATG-CATGTCCCAGACATGGTCTTACACTGGCTATCATCATCTAC--GCT
* * * *
95356542 GATGCATGTCCCAGACAT-GTCTTACACTAGC-A-CAACTTTTA-GCT
1 GATGCATGTCCCAGACATGGTCTTACACTGGCTATCATCATCTACGCT
* * * * * * *
95356586 GATGTATGTCCTAGACA-CGTCTTACACTGGCTATCATCGTCGAGGCC
1 GATGCATGTCCCAGACATGGTCTTACACTGGCTATCATCATCTACGCT
* * * * *
95356633 GATGTATGTGCAAGACAT-GTCTTACACTGGC-ACTCATC-TCTAAGCC
1 GATGCATGTCCCAGACATGGTCTTACACTGGCTA-TCATCATCTACGCT
* * * * * *
95356679 AATGCCATGTCTCAGACATGGTCTTACACTGGC-ATACATAATGT-GGCC
1 GATG-CATGTCCCAGACATGGTCTTACACTGGCTAT-CATCATCTACGCT
* *
95356727 GATGCATGTCCCAAACAT-GTCTTAGACTGGC
1 GATGCATGTCCCAGACATGGTCTTACACTGGC
95356758 ACATAAGTAA
Statistics
Matches: 218, Mismatches: 35, Indels: 29
0.77 0.12 0.10
Matches are distributed among these distances:
44 30 0.14
45 1 0.00
46 29 0.13
47 61 0.28
48 40 0.18
49 51 0.23
50 6 0.03
ACGTcount: A:0.25, C:0.27, G:0.20, T:0.29
Consensus pattern (48 bp):
GATGCATGTCCCAGACATGGTCTTACACTGGCTATCATCATCTACGCT
Found at i:95363021 original size:19 final size:19
Alignment explanation
Indices: 95362997--95363041 Score: 90
Period size: 19 Copynumber: 2.4 Consensus size: 19
95362987 GTATATAACA
95362997 CACGCCCGTGTGCTTGGGC
1 CACGCCCGTGTGCTTGGGC
95363016 CACGCCCGTGTGCTTGGGC
1 CACGCCCGTGTGCTTGGGC
95363035 CACGCCC
1 CACGCCC
95363042 ATGTCCTGCA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 26 1.00
ACGTcount: A:0.07, C:0.42, G:0.33, T:0.18
Consensus pattern (19 bp):
CACGCCCGTGTGCTTGGGC
Found at i:95364368 original size:48 final size:46
Alignment explanation
Indices: 95364080--95364399 Score: 220
Period size: 47 Copynumber: 6.8 Consensus size: 46
95364070 GTGAAAAGTT
* * *
95364080 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTA-TCATCATCGAG
1 GCCGATG-CATGTCCCAGACAT-GTATTACACTGGC-ACTCAT-ATCTAC
* * * * *
95364129 GCCGATGACATGTCCCAGACATGGTCTTACACTAGCTCTCGTATATAC
1 GCCGATG-CATGTCCCAGACAT-GTATTACACTGGCACTCATATCTAC
* * * *
95364177 GTTCTGATGCATGTCCCAGACATGTCTTACACTAGCA--CAAATCTTAC
1 G--CCGATGCATGTCCCAGACATGTATTACACTGGCACTCATATC-TAC
* * * * * * *
95364224 -CCGATGTATGTCCCAGACACGTCTTACACTGGTTA-TCATCGTCGAG
1 GCCGATGCATGTCCCAGACATGTATTACACTGG-CACTCAT-ATCTAC
* * * *
95364270 GTCGATGCATGTCCCAGACATGTTTTACACTGGCACTTATCTCTAC
1 GCCGATGCATGTCCCAGACATGTATTACACTGGCACTCATATCTAC
* * * *
95364316 GCCGATGCCATGTCCCAAACATTGTGTTACACTGGCACTCATAATGT-G
1 GCCGATG-CATGTCCCAGACA-TGTATTACACTGGCACTCAT-ATCTAC
*
95364364 GCCGATGCATGTCCCAGACATGTATTACACTAGCAC
1 GCCGATGCATGTCCCAGACATGTATTACACTGGCAC
95364400 ATAAGTAATC
Statistics
Matches: 219, Mismatches: 40, Indels: 27
0.77 0.14 0.09
Matches are distributed among these distances:
44 28 0.13
45 1 0.00
46 30 0.14
47 60 0.27
48 42 0.19
49 53 0.24
50 5 0.02
ACGTcount: A:0.24, C:0.29, G:0.19, T:0.28
Consensus pattern (46 bp):
GCCGATGCATGTCCCAGACATGTATTACACTGGCACTCATATCTAC
Found at i:95364369 original size:141 final size:140
Alignment explanation
Indices: 95364080--95364394 Score: 341
Period size: 141 Copynumber: 2.2 Consensus size: 140
95364070 GTGAAAAGTT
*
95364080 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTATCATCATCGAGGCCGATGACATGTCCC
1 GCCGATG-CATGTCCCAGACA-CGTCTTACACTGGCTATCATCATCGAGGCCGATGACATGTCCC
* * * *
95364145 AGACATGGTCTTACACTAGCTCTCGTATATACGTTCTGATGCATGTCCCAGACATGTCTTACACT
64 AGACATGGTCTTACACTAGCACTCATATATACG-TCCGATGCATGTCCCAAACATGTCTTACACT
*
95364210 AGCACAAATCTTA
128 AGCACAAATCGTA
* * * * *
95364223 CCCGATGTATGTCCCAGACACGTCTTACACTGGTTATCATCGTCGAGGTCGATG-CATGTCCCAG
1 GCCGATGCATGTCCCAGACACGTCTTACACTGGCTATCATCATCGAGGCCGATGACATGTCCCAG
* * * * * * *
95364287 ACAT-GTTTTACACTGGCACTTATCTCTACG-CCGATGCCATGTCCCAAACATTGTGTTACACTG
66 ACATGGTCTTACACTAGCACTCATATATACGTCCGATG-CATGTCCCAAACA-TGTCTTACACTA
*
95364350 GCACTCATAAT-GTG
129 GCA--CA-AATCGTA
* *
95364364 GCCGATGCATGTCCCAGACATGTATTACACT
1 GCCGATGCATGTCCCAGACACGTCTTACACT
95364395 AGCACATAAG
Statistics
Matches: 144, Mismatches: 23, Indels: 12
0.80 0.13 0.07
Matches are distributed among these distances:
137 5 0.03
138 12 0.08
139 32 0.22
140 14 0.10
141 60 0.42
142 15 0.10
143 6 0.04
ACGTcount: A:0.24, C:0.29, G:0.19, T:0.28
Consensus pattern (140 bp):
GCCGATGCATGTCCCAGACACGTCTTACACTGGCTATCATCATCGAGGCCGATGACATGTCCCAG
ACATGGTCTTACACTAGCACTCATATATACGTCCGATGCATGTCCCAAACATGTCTTACACTAGC
ACAAATCGTA
Found at i:95364392 original size:94 final size:93
Alignment explanation
Indices: 95364080--95364399 Score: 283
Period size: 94 Copynumber: 3.4 Consensus size: 93
95364070 GTGAAAAGTT
* * * *
95364080 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTA-TCATCATCGAGGCCGATGACATGTCC
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTAGC-ACTAATC-TCTACGCCGATG-CATGTCC
* * * *
95364144 CAGACATGGTCTTACACTAGCTCTCGTATATACGT-
61 CAGACATCGTCTTACACTGGCACTC--ATA-ATGTG
* * * *
95364179 TCTGATGCATGTCCCAGACATGTCTTACACTAGCACAAATCT-TAC-CCGATGTATGTCCCAGAC
1 GCCGATGCATGTCCCAGACATGTCTTACACTAGCACTAATCTCTACGCCGATGCATGTCCCAGAC
* ** *
95364242 A-CGTCTTACACTGGTTA-TCATCGTCGAG
66 ATCGTCTTACACTGG-CACTCATAAT-GTG
* * * * *
95364270 GTCGATGCATGTCCCAGACATGTTTTACACTGGCACTTATCTCTACGCCGATGCCATGTCCCAAA
1 GCCGATGCATGTCCCAGACATGTCTTACACTAGCACTAATCTCTACGCCGATG-CATGTCCCAGA
* *
95364335 CATTGTGTTACACTGGCACTCATAATGTG
65 CATCGTCTTACACTGGCACTCATAATGTG
*
95364364 GCCGATGCATGTCCCAGACATGTATTACACTAGCAC
1 GCCGATGCATGTCCCAGACATGTCTTACACTAGCAC
95364400 ATAAGTAATC
Statistics
Matches: 178, Mismatches: 34, Indels: 23
0.76 0.14 0.10
Matches are distributed among these distances:
90 3 0.02
91 35 0.20
92 16 0.09
93 18 0.10
94 53 0.30
95 17 0.10
96 2 0.01
97 15 0.08
98 14 0.08
99 5 0.03
ACGTcount: A:0.24, C:0.29, G:0.19, T:0.28
Consensus pattern (93 bp):
GCCGATGCATGTCCCAGACATGTCTTACACTAGCACTAATCTCTACGCCGATGCATGTCCCAGAC
ATCGTCTTACACTGGCACTCATAATGTG
Found at i:95368500 original size:55 final size:55
Alignment explanation
Indices: 95368413--95368560 Score: 164
Period size: 55 Copynumber: 2.7 Consensus size: 55
95368403 TTTTTATAGT
* *
95368413 ATTATATATTATAATTTT-TT-AATTCATA--TAATAATTATATTAAGAATTTTA-TTAA
1 ATTATATATTAT--TTTTATTAAATT-ATATTTAATAATAATATT-A-AATTATAGTTAA
*
95368468 ATTATATATTA-TTTTATTAAATTATATTTAATAATAATGTTAAATTATAGTTAA
1 ATTATATATTATTTTTATTAAATTATATTTAATAATAATATTAAATTATAGTTAA
* *
95368522 ATTATTTATTATTTTTATTAAATTATTTTTAATAATAAT
1 ATTATATATTATTTTTATTAAATTATATTTAATAATAAT
95368561 CTTATTAAAA
Statistics
Matches: 82, Mismatches: 5, Indels: 12
0.83 0.05 0.12
Matches are distributed among these distances:
52 4 0.05
53 11 0.13
54 19 0.23
55 48 0.59
ACGTcount: A:0.43, C:0.01, G:0.02, T:0.55
Consensus pattern (55 bp):
ATTATATATTATTTTTATTAAATTATATTTAATAATAATATTAAATTATAGTTAA
Found at i:95368758 original size:16 final size:16
Alignment explanation
Indices: 95368737--95368788 Score: 70
Period size: 16 Copynumber: 3.2 Consensus size: 16
95368727 TGAATTACTG
95368737 ATTACAGCTCTATTCT
1 ATTACAGCTCTATTCT
95368753 ATTACAGCTCTATT-T
1 ATTACAGCTCTATTCT
* *
95368768 AATTACAGCCCTATTCC
1 -ATTACAGCTCTATTCT
95368785 ATTA
1 ATTA
95368789 TAGTGAATAA
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
15 1 0.03
16 31 0.97
ACGTcount: A:0.29, C:0.25, G:0.06, T:0.40
Consensus pattern (16 bp):
ATTACAGCTCTATTCT
Found at i:95369378 original size:52 final size:52
Alignment explanation
Indices: 95369309--95369494 Score: 160
Period size: 52 Copynumber: 3.7 Consensus size: 52
95369299 TAAAAAAATG
*
95369309 ATTTTTTTCGTATCTGGTGCCGGCCATT-GACAGGCCAGCACCAAAAAATTTT
1 ATTTTTTTCGTACCTGGTGCCGGCCATTAGA-AGGCCAGCACCAAAAAATTTT
95369361 GATTTTTTTCGTA-CTGGTGCCGGCCATTAGAAGG-C--CA--AAAAAATTTT
1 -ATTTTTTTCGTACCTGGTGCCGGCCATTAGAAGGCCAGCACCAAAAAATTTT
** ** * * * *
95369408 A-AATACTCATACCTGGTGTCGGCCA-T-GACAGACCAGCACCAAAAAAATGTT
1 ATTTTTTTCGTACCTGGTGCCGGCCATTAGA-AGGCCAGCACC-AAAAAATTTT
* *
95369459 ATTTTTTTCGTA-TTGGTGCCGACCATTAGAAGGCCA
1 ATTTTTTTCGTACCTGGTGCCGGCCATTAGAAGGCCA
95369495 AAACAAAAAA
Statistics
Matches: 104, Mismatches: 17, Indels: 25
0.71 0.12 0.17
Matches are distributed among these distances:
44 2 0.02
45 8 0.08
46 14 0.13
47 10 0.10
48 2 0.02
49 2 0.02
51 21 0.20
52 29 0.28
53 16 0.15
ACGTcount: A:0.28, C:0.22, G:0.20, T:0.30
Consensus pattern (52 bp):
ATTTTTTTCGTACCTGGTGCCGGCCATTAGAAGGCCAGCACCAAAAAATTTT
Found at i:95369401 original size:46 final size:51
Alignment explanation
Indices: 95369307--95369485 Score: 128
Period size: 51 Copynumber: 3.6 Consensus size: 51
95369297 TTTAAAAAAA
95369307 TGATTTTTTTCGTATCTGGTGCCGGCCATTGACAGGCCAGCACC-AAAAAATTT
1 TGATTTTTTTCGTATCTGGTGCCGGCCATTGACAGG-C-G-ACCAAAAAAATTT
95369360 TGATTTTTTTCGTA-CTGGTGCCGGCCATTAGA-A-G-G-CCAAAAAAATTT
1 TGATTTTTTTCGTATCTGGTGCCGGCCATT-GACAGGCGACCAAAAAAATTT
** ** * * * * *
95369407 T-A-AATACTCATACCTGGTGTCGGCCA-TGACAGACCAGCACCAAAAAAATGT
1 TGATTTTTTTCGTATCTGGTGCCGGCCATTGACAG-GC-G-ACCAAAAAAATTT
*
95369458 T-ATTTTTTTCGTAT-TGGTGCCGACCATT
1 TGATTTTTTTCGTATCTGGTGCCGGCCATT
95369486 AGAAGGCCAA
Statistics
Matches: 98, Mismatches: 16, Indels: 25
0.71 0.12 0.18
Matches are distributed among these distances:
44 2 0.02
45 7 0.07
46 15 0.15
47 10 0.10
48 1 0.01
49 1 0.01
51 24 0.24
52 22 0.22
53 16 0.16
ACGTcount: A:0.27, C:0.21, G:0.20, T:0.32
Consensus pattern (51 bp):
TGATTTTTTTCGTATCTGGTGCCGGCCATTGACAGGCGACCAAAAAAATTT
Found at i:95370325 original size:22 final size:21
Alignment explanation
Indices: 95370294--95370334 Score: 64
Period size: 22 Copynumber: 1.9 Consensus size: 21
95370284 TCATTCAATA
*
95370294 AATTAATAAATTTAATTTTTT
1 AATTAATAAATATAATTTTTT
95370315 AATTAAATAAATATAATTTT
1 AATT-AATAAATATAATTTT
95370335 ATTTTAAATA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 4 0.22
22 14 0.78
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (21 bp):
AATTAATAAATATAATTTTTT
Found at i:95380574 original size:48 final size:48
Alignment explanation
Indices: 95380498--95380857 Score: 388
Period size: 48 Copynumber: 7.6 Consensus size: 48
95380488 GGTGAGATGT
* * *
95380498 CGATGCCATGTTCCAAACATGGTCTTACACTAGCTCTTATATCAATCC
1 CGATGCCATGTTCCAAACATGGTCTTACACTAGCTCTCATGTCAATGC
* * * * *
95380546 CGATACCATGTTCCAAACATGGTCTTACACTCGCTCACATGTCGAGGC
1 CGATGCCATGTTCCAAACATGGTCTTACACTAGCTCTCATGTCAATGC
* * *
95380594 CGATGCCATGTCCCAAACATGGTCTTACACTAGCTCTCATATCAATAC
1 CGATGCCATGTTCCAAACATGGTCTTACACTAGCTCTCATGTCAATGC
* * * * *
95380642 CGATGCCATGTTCTAAACATGGTCTT-CACTAGTTCACATGTCGAGGC
1 CGATGCCATGTTCCAAACATGGTCTTACACTAGCTCTCATGTCAATGC
* * * * *
95380689 CGATACCATGTCCCAAACAT-G---TACACTACCTCTCATATTAATGC
1 CGATGCCATGTTCCAAACATGGTCTTACACTAGCTCTCATGTCAATGC
* * ** * * * *
95380733 CGACGCCATGTTCTAAACATAATTTTACACTGGCTCACATGTCGATGC
1 CGATGCCATGTTCCAAACATGGTCTTACACTAGCTCTCATGTCAATGC
* **
95380781 CGATGCCATGTCCCAAACATGGTCTTATGCTAGCTCTCATGTCAATGC
1 CGATGCCATGTTCCAAACATGGTCTTACACTAGCTCTCATGTCAATGC
*
95380829 CGATACCATGTTCCAAACATGGTCTTACA
1 CGATGCCATGTTCCAAACATGGTCTTACA
95380858 TTGTTGCGTT
Statistics
Matches: 247, Mismatches: 60, Indels: 10
0.78 0.19 0.03
Matches are distributed among these distances:
43 1 0.00
44 30 0.12
46 1 0.00
47 32 0.13
48 183 0.74
ACGTcount: A:0.27, C:0.29, G:0.16, T:0.28
Consensus pattern (48 bp):
CGATGCCATGTTCCAAACATGGTCTTACACTAGCTCTCATGTCAATGC
Found at i:95380652 original size:96 final size:96
Alignment explanation
Indices: 95380498--95380857 Score: 487
Period size: 96 Copynumber: 3.8 Consensus size: 96
95380488 GGTGAGATGT
* * *
95380498 CGATGCCATGTTCCAAACATGGTCTTACACTAGCTCTTATATCAATCCCGATACCATGTTCCAAA
1 CGATGCCATGTCCCAAACATGGTCTTACACTAGCTCTCATATCAATGCCGATACCATGTTCCAAA
*
95380563 CATGGTCTTACACTCGCTCACATGTCGAGGC
66 CATGGTCTTACACTAGCTCACATGTCGAGGC
* * *
95380594 CGATGCCATGTCCCAAACATGGTCTTACACTAGCTCTCATATCAATACCGATGCCATGTTCTAAA
1 CGATGCCATGTCCCAAACATGGTCTTACACTAGCTCTCATATCAATGCCGATACCATGTTCCAAA
*
95380659 CATGGTCTT-CACTAGTTCACATGTCGAGGC
66 CATGGTCTTACACTAGCTCACATGTCGAGGC
* * * ** *
95380689 CGATACCATGTCCCAAACAT-G---TACACTACCTCTCATATTAATGCCGACGCCATGTTCTAAA
1 CGATGCCATGTCCCAAACATGGTCTTACACTAGCTCTCATATCAATGCCGATACCATGTTCCAAA
** * * *
95380750 CATAATTTTACACTGGCTCACATGTCGATGC
66 CATGGTCTTACACTAGCTCACATGTCGAGGC
** *
95380781 CGATGCCATGTCCCAAACATGGTCTTATGCTAGCTCTCATGTCAATGCCGATACCATGTTCCAAA
1 CGATGCCATGTCCCAAACATGGTCTTACACTAGCTCTCATATCAATGCCGATACCATGTTCCAAA
95380846 CATGGTCTTACA
66 CATGGTCTTACA
95380858 TTGTTGCGTT
Statistics
Matches: 229, Mismatches: 30, Indels: 10
0.85 0.11 0.04
Matches are distributed among these distances:
91 42 0.18
92 37 0.16
93 1 0.00
94 1 0.00
95 38 0.17
96 110 0.48
ACGTcount: A:0.27, C:0.29, G:0.16, T:0.28
Consensus pattern (96 bp):
CGATGCCATGTCCCAAACATGGTCTTACACTAGCTCTCATATCAATGCCGATACCATGTTCCAAA
CATGGTCTTACACTAGCTCACATGTCGAGGC
Found at i:95380912 original size:38 final size:38
Alignment explanation
Indices: 95380861--95380937 Score: 154
Period size: 38 Copynumber: 2.0 Consensus size: 38
95380851 TCTTACATTG
95380861 TTGCGTTCTTAGTTTAGTTAATTTTAGATTAAAATCAA
1 TTGCGTTCTTAGTTTAGTTAATTTTAGATTAAAATCAA
95380899 TTGCGTTCTTAGTTTAGTTAATTTTAGATTAAAATCAA
1 TTGCGTTCTTAGTTTAGTTAATTTTAGATTAAAATCAA
95380937 T
1 T
95380938 CTCATTAATT
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 39 1.00
ACGTcount: A:0.31, C:0.08, G:0.13, T:0.48
Consensus pattern (38 bp):
TTGCGTTCTTAGTTTAGTTAATTTTAGATTAAAATCAA
Found at i:95381195 original size:25 final size:25
Alignment explanation
Indices: 95381135--95381198 Score: 112
Period size: 25 Copynumber: 2.6 Consensus size: 25
95381125 GGAGCACTCA
*
95381135 ATTTTTATT-AAGTTAGCCATTTTT
1 ATTTTTATTAAATTTAGCCATTTTT
95381159 ATTTTTATTAAATTTAGCCATTTTT
1 ATTTTTATTAAATTTAGCCATTTTT
95381184 ATTTTTATTAAATTT
1 ATTTTTATTAAATTT
95381199 TTGTTTTTAG
Statistics
Matches: 38, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
24 9 0.24
25 29 0.76
ACGTcount: A:0.28, C:0.06, G:0.05, T:0.61
Consensus pattern (25 bp):
ATTTTTATTAAATTTAGCCATTTTT
Found at i:95384532 original size:6 final size:6
Alignment explanation
Indices: 95384516--95384551 Score: 56
Period size: 6 Copynumber: 6.2 Consensus size: 6
95384506 AGTCCATTAG
*
95384516 TTTTA- TTTTAT TTTTAT TTTTAT GTTTAT TTTTAT T
1 TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT T
95384552 CTCTTAGACT
Statistics
Matches: 28, Mismatches: 2, Indels: 1
0.90 0.06 0.03
Matches are distributed among these distances:
5 5 0.18
6 23 0.82
ACGTcount: A:0.17, C:0.00, G:0.03, T:0.81
Consensus pattern (6 bp):
TTTTAT
Found at i:95384545 original size:18 final size:17
Alignment explanation
Indices: 95384516--95384551 Score: 63
Period size: 18 Copynumber: 2.1 Consensus size: 17
95384506 AGTCCATTAG
95384516 TTTTATTTTATTTTTAT
1 TTTTATTTTATTTTTAT
95384533 TTTTATGTTTATTTTTAT
1 TTTTAT-TTTATTTTTAT
95384551 T
1 T
95384552 CTCTTAGACT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
17 6 0.33
18 12 0.67
ACGTcount: A:0.17, C:0.00, G:0.03, T:0.81
Consensus pattern (17 bp):
TTTTATTTTATTTTTAT
Found at i:95394115 original size:47 final size:44
Alignment explanation
Indices: 95393871--95394122 Score: 154
Period size: 47 Copynumber: 5.5 Consensus size: 44
95393861 TTTGTGTGCT
* *
95393871 AGTGTAAGACATGTCTGGGACATGCATCGGCCATATTATGA-GAGCC
1 AGTGTAAGACATGTCTGGGACATGCATC-GAC-T-TGATGATGAGCC
* * *
95393917 AATGTAAGACCATGTCTGGGACATGGTATCGGTA-TTGAAATGA-GAGCT
1 AGTGTAAGA-CATGTCTGGGACAT-GCATC-G-ACTTG--ATGATGAGCC
* * * * * *
95393965 AGTGTAAGACATGTCTGAGACATGCATTAGCCTCGA-GATGTAATCT
1 AGTGTAAGACATGTCTGGGACATGCA-TCGACTTGATGATG--AGCC
* * ** * *
95394011 AATGTAAGACATGTCTGGGACATGCATCGGCTAT-AAAATGTGTC
1 AGTGTAAGACATGTCTGGGACATGCATCGACT-TGATGATGAGCC
95394055 AGTGTAAGACCATGTCTGGGACATGGCATCGACTTGATGGATGAGCC
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGACTTGAT-GATGAGCC
*
95394102 AGTGTAAGACCATGTGTGGGA
1 AGTGTAAGA-CATGTCTGGGA
95394123 TATGGCATAG
Statistics
Matches: 161, Mismatches: 29, Indels: 31
0.73 0.13 0.14
Matches are distributed among these distances:
43 2 0.01
44 10 0.06
45 20 0.12
46 53 0.33
47 54 0.34
48 22 0.14
ACGTcount: A:0.29, C:0.16, G:0.29, T:0.26
Consensus pattern (44 bp):
AGTGTAAGACATGTCTGGGACATGCATCGACTTGATGATGAGCC
Found at i:95401526 original size:15 final size:15
Alignment explanation
Indices: 95401506--95401556 Score: 52
Period size: 15 Copynumber: 3.5 Consensus size: 15
95401496 AAAACCCATT
95401506 AACATAAGTGATTAA
1 AACATAAGTGATTAA
*
95401521 AACATAA-T-ATTTTA
1 AACATAAGTGA-TTAA
*
95401535 AACATAAGTGACTAA
1 AACATAAGTGATTAA
*
95401550 AATATAA
1 AACATAA
95401557 CTTAAGGAAA
Statistics
Matches: 29, Mismatches: 4, Indels: 6
0.74 0.10 0.15
Matches are distributed among these distances:
13 1 0.03
14 11 0.38
15 16 0.55
16 1 0.03
ACGTcount: A:0.55, C:0.08, G:0.08, T:0.29
Consensus pattern (15 bp):
AACATAAGTGATTAA
Found at i:95415757 original size:15 final size:14
Alignment explanation
Indices: 95415739--95415774 Score: 54
Period size: 15 Copynumber: 2.4 Consensus size: 14
95415729 TAGAACTGAA
95415739 AAAAATAATTAAATT
1 AAAAATAATT-AATT
95415754 AAAATATAATTAATT
1 AAAA-ATAATTAATT
95415769 AAAAAT
1 AAAAAT
95415775 GTATTATGAT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
14 2 0.10
15 12 0.60
16 6 0.30
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (14 bp):
AAAAATAATTAATT
Found at i:95415762 original size:16 final size:15
Alignment explanation
Indices: 95415738--95415773 Score: 54
Period size: 16 Copynumber: 2.3 Consensus size: 15
95415728 ATAGAACTGA
95415738 AAAAAATAATTAAATT
1 AAAAAATAATT-AATT
*
95415754 AAAATATAATTAATT
1 AAAAAATAATTAATT
95415769 AAAAA
1 AAAAA
95415774 TGTATTATGA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
15 8 0.44
16 10 0.56
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (15 bp):
AAAAAATAATTAATT
Found at i:95416459 original size:18 final size:16
Alignment explanation
Indices: 95416436--95416479 Score: 61
Period size: 18 Copynumber: 2.6 Consensus size: 16
95416426 TATGTGTTAT
95416436 AAAATTACATAATAAATA
1 AAAATTACATAAT--ATA
95416454 AAAATTACATAATATA
1 AAAATTACATAATATA
95416470 AAACATTACA
1 AAA-ATTACA
95416480 AACTAAAAAA
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
16 6 0.24
17 6 0.24
18 13 0.52
ACGTcount: A:0.64, C:0.09, G:0.00, T:0.27
Consensus pattern (16 bp):
AAAATTACATAATATA
Found at i:95416489 original size:17 final size:17
Alignment explanation
Indices: 95416439--95416491 Score: 63
Period size: 17 Copynumber: 3.1 Consensus size: 17
95416429 GTGTTATAAA
*
95416439 ATTACATAATAAATAAAA
1 ATTACATAATAAA-AAAC
*
95416457 ATTACATAATATAAAAC
1 ATTACATAATAAAAAAC
95416474 ATTACA-AACTAAAAAAC
1 ATTACATAA-TAAAAAAC
95416491 A
1 A
95416492 AGCCTATTTT
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
16 2 0.06
17 17 0.55
18 12 0.39
ACGTcount: A:0.64, C:0.11, G:0.00, T:0.25
Consensus pattern (17 bp):
ATTACATAATAAAAAAC
Found at i:95416807 original size:27 final size:24
Alignment explanation
Indices: 95416753--95416800 Score: 69
Period size: 25 Copynumber: 2.0 Consensus size: 24
95416743 ACTATATGAC
**
95416753 ATTTATTATTAAATTGTAATATAT
1 ATTTATTATTAAATAATAATATAT
95416777 ATTTATTATTAAAATAATAATATA
1 ATTTATTATT-AAATAATAATATA
95416801 AATATTTTTT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
24 10 0.48
25 11 0.52
ACGTcount: A:0.48, C:0.00, G:0.02, T:0.50
Consensus pattern (24 bp):
ATTTATTATTAAATAATAATATAT
Found at i:95416861 original size:15 final size:16
Alignment explanation
Indices: 95416841--95416870 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
95416831 TATTTAAGAT
95416841 TTAAAA-TTATTATTG
1 TTAAAATTTATTATTG
95416856 TTAAAATTTATTATT
1 TTAAAATTTATTATT
95416871 AAAATCAAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 6 0.43
16 8 0.57
ACGTcount: A:0.40, C:0.00, G:0.03, T:0.57
Consensus pattern (16 bp):
TTAAAATTTATTATTG
Found at i:95417916 original size:33 final size:33
Alignment explanation
Indices: 95417874--95417937 Score: 94
Period size: 33 Copynumber: 1.9 Consensus size: 33
95417864 TGGGGCCACA
*
95417874 TGCCCGTGTGCGCCCACATGG-CCAAAATGGCTT
1 TGCCCGTGTG-GCCCACACGGCCCAAAATGGCTT
*
95417907 TGCCCGTGTGGCCTACACGGCCCAAAATGGC
1 TGCCCGTGTGGCCCACACGGCCCAAAATGGC
95417938 CTAAGCCGTG
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
32 8 0.29
33 20 0.71
ACGTcount: A:0.19, C:0.34, G:0.28, T:0.19
Consensus pattern (33 bp):
TGCCCGTGTGGCCCACACGGCCCAAAATGGCTT
Found at i:95418994 original size:12 final size:13
Alignment explanation
Indices: 95418977--95419006 Score: 53
Period size: 12 Copynumber: 2.4 Consensus size: 13
95418967 ATCTTAAAAA
95418977 TATTTAATTTA-G
1 TATTTAATTTATG
95418989 TATTTAATTTATG
1 TATTTAATTTATG
95419002 TATTT
1 TATTT
95419007 TTTATACTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 11 0.65
13 6 0.35
ACGTcount: A:0.30, C:0.00, G:0.07, T:0.63
Consensus pattern (13 bp):
TATTTAATTTATG
Found at i:95420899 original size:93 final size:93
Alignment explanation
Indices: 95420799--95420985 Score: 311
Period size: 93 Copynumber: 2.0 Consensus size: 93
95420789 AACTCGACTA
*
95420799 ACTCGAAATTTTTTTACTCGATTTAACTCAACTCGATCGAATACTCACCCTTAATCTCATCATTG
1 ACTCGAAATTATTTTACTCGATTTAACTCAACTCGATCGAATACTCACCCTTAATCTCATCATTG
95420864 TGGAAAAGATAAGAATTGTAAAGGTTAT
66 TGGAAAAGATAAGAATTGTAAAGGTTAT
* * * *
95420892 ACTCGAAATTATTTTACTTGATTTGACTCGACTCGATCGAATACTCACCTTTAATCTCATCATTG
1 ACTCGAAATTATTTTACTCGATTTAACTCAACTCGATCGAATACTCACCCTTAATCTCATCATTG
* *
95420957 TGGAAAGGATAAGAATTGTAAATGTTAT
66 TGGAAAAGATAAGAATTGTAAAGGTTAT
95420985 A
1 A
95420986 GGGATTGTAA
Statistics
Matches: 87, Mismatches: 7, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
93 87 1.00
ACGTcount: A:0.34, C:0.17, G:0.14, T:0.35
Consensus pattern (93 bp):
ACTCGAAATTATTTTACTCGATTTAACTCAACTCGATCGAATACTCACCCTTAATCTCATCATTG
TGGAAAAGATAAGAATTGTAAAGGTTAT
Found at i:95422420 original size:4 final size:4
Alignment explanation
Indices: 95422407--95422440 Score: 61
Period size: 4 Copynumber: 8.8 Consensus size: 4
95422397 TCGATATCAA
95422407 AAAG -AAG AAAG AAAG AAAG AAAG AAAG AAAG AAA
1 AAAG AAAG AAAG AAAG AAAG AAAG AAAG AAAG AAA
95422441 AACAAAGACA
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
3 3 0.10
4 26 0.90
ACGTcount: A:0.76, C:0.00, G:0.24, T:0.00
Consensus pattern (4 bp):
AAAG
Found at i:95428657 original size:13 final size:14
Alignment explanation
Indices: 95428639--95428667 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
95428629 GATGCTTATG
95428639 TTTAATTCA-TGAT
1 TTTAATTCATTGAT
95428652 TTTAATTCATTGAT
1 TTTAATTCATTGAT
95428666 TT
1 TT
95428668 CGTTGTTGTG
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 9 0.60
14 6 0.40
ACGTcount: A:0.28, C:0.07, G:0.07, T:0.59
Consensus pattern (14 bp):
TTTAATTCATTGAT
Found at i:95436405 original size:38 final size:36
Alignment explanation
Indices: 95436363--95436443 Score: 110
Period size: 41 Copynumber: 2.1 Consensus size: 36
95436353 TTAAAAAGTA
95436363 TTTATATTAAAAAACACTACCATAAATATAATAAATATTT
1 TTTATATTAAAAAACAC-A--ATAAATATAATAAATA-TT
95436403 TATTATATTAAAAAACACAATAAATATAATAAAT-TT
1 T-TTATATTAAAAAACACAATAAATATAATAAATATT
95436439 TTTAT
1 TTTAT
95436444 TGTATTAAAT
Statistics
Matches: 40, Mismatches: 0, Indels: 7
0.85 0.00 0.15
Matches are distributed among these distances:
35 4 0.10
36 3 0.08
38 15 0.38
40 2 0.05
41 16 0.40
ACGTcount: A:0.53, C:0.07, G:0.00, T:0.40
Consensus pattern (36 bp):
TTTATATTAAAAAACACAATAAATATAATAAATATT
Found at i:95436444 original size:38 final size:40
Alignment explanation
Indices: 95436364--95436452 Score: 137
Period size: 38 Copynumber: 2.2 Consensus size: 40
95436354 TAAAAAGTAT
95436364 TTATATTAAAAAACACTACCATAAATATAATAAATATTTTA
1 TTATATTAAAAAACACTA-CATAAATATAATAAATATTTTA
*
95436405 TTATATTAAAAAACAC-A-ATAAATATAATAAATTTTTTA
1 TTATATTAAAAAACACTACATAAATATAATAAATATTTTA
*
95436443 TTGTATTAAA
1 TTATATTAAA
95436453 TATAATTTTT
Statistics
Matches: 46, Mismatches: 2, Indels: 3
0.90 0.04 0.06
Matches are distributed among these distances:
38 29 0.63
40 1 0.02
41 16 0.35
ACGTcount: A:0.53, C:0.07, G:0.01, T:0.39
Consensus pattern (40 bp):
TTATATTAAAAAACACTACATAAATATAATAAATATTTTA
Found at i:95436572 original size:20 final size:21
Alignment explanation
Indices: 95436536--95436575 Score: 64
Period size: 20 Copynumber: 1.9 Consensus size: 21
95436526 TAGGTTAGTG
95436536 ATTTAATATAAATATAATTATT
1 ATTTAATAT-AATATAATTATT
95436558 ATTTAATAT-ATATAATTA
1 ATTTAATATAATATAATTA
95436576 ATATAATTAT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 9 0.50
22 9 0.50
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (21 bp):
ATTTAATATAATATAATTATT
Found at i:95436598 original size:26 final size:29
Alignment explanation
Indices: 95436546--95436599 Score: 78
Period size: 29 Copynumber: 2.0 Consensus size: 29
95436536 ATTTAATATA
*
95436546 AATATAATTATTATTTAATATATATAATT
1 AATATAATTATTATTTAATATACATAATT
95436575 AATATAATTATT-TTT-ATA-ACATAAT
1 AATATAATTATTATTTAATATACATAAT
95436600 ATATTCGGAT
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
26 6 0.25
27 3 0.12
28 3 0.12
29 12 0.50
ACGTcount: A:0.48, C:0.02, G:0.00, T:0.50
Consensus pattern (29 bp):
AATATAATTATTATTTAATATACATAATT
Found at i:95438797 original size:44 final size:44
Alignment explanation
Indices: 95438747--95438836 Score: 180
Period size: 44 Copynumber: 2.0 Consensus size: 44
95438737 TAGAAAGAAA
95438747 AGCAACACATTCATTCATTATGACCTTAAACAACAACAATTCAC
1 AGCAACACATTCATTCATTATGACCTTAAACAACAACAATTCAC
95438791 AGCAACACATTCATTCATTATGACCTTAAACAACAACAATTCAC
1 AGCAACACATTCATTCATTATGACCTTAAACAACAACAATTCAC
95438835 AG
1 AG
95438837 TATTGGAATA
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
44 46 1.00
ACGTcount: A:0.43, C:0.27, G:0.06, T:0.24
Consensus pattern (44 bp):
AGCAACACATTCATTCATTATGACCTTAAACAACAACAATTCAC
Found at i:95440539 original size:13 final size:14
Alignment explanation
Indices: 95440515--95440552 Score: 58
Period size: 14 Copynumber: 2.7 Consensus size: 14
95440505 ATTTGCCAGT
*
95440515 AAAATATTTTTTAA
1 AAAATAATTTTTAA
*
95440529 AAAATAATTTTTAG
1 AAAATAATTTTTAA
95440543 AAAATAATTT
1 AAAATAATTT
95440553 ACTTTTCTGA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
14 22 1.00
ACGTcount: A:0.53, C:0.00, G:0.03, T:0.45
Consensus pattern (14 bp):
AAAATAATTTTTAA
Found at i:95445219 original size:33 final size:33
Alignment explanation
Indices: 95445176--95445242 Score: 116
Period size: 33 Copynumber: 2.0 Consensus size: 33
95445166 GGGTGACCTA
*
95445176 TATGGGGCCATCACTTGGGAAGTCAGATCGCGT
1 TATGGAGCCATCACTTGGGAAGTCAGATCGCGT
*
95445209 TATGGAGCCATCACTTGGGAAGTCGGATCGCGT
1 TATGGAGCCATCACTTGGGAAGTCAGATCGCGT
95445242 T
1 T
95445243 GCAACTCAAG
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
33 32 1.00
ACGTcount: A:0.21, C:0.21, G:0.33, T:0.25
Consensus pattern (33 bp):
TATGGAGCCATCACTTGGGAAGTCAGATCGCGT
Found at i:95448336 original size:62 final size:59
Alignment explanation
Indices: 95448270--95448386 Score: 162
Period size: 62 Copynumber: 1.9 Consensus size: 59
95448260 AATGATTATC
* * * *
95448270 TTAATATTAAATTTAATTTAATGCTTATCTTGTAGATAAATATTCTATTATTTTAATAAGAT
1 TTAATATTAAATTTAATCTAATACTTATC-T-T-GATAAATATTATATTAATTTAATAAGAT
*
95448332 TTAATATTAAATTTAATCTAATATTTATCTTGATAAATATTATATTAATTTAATA
1 TTAATATTAAATTTAATCTAATACTTATCTTGATAAATATTATATTAATTTAATA
95448387 CTAAAGTGAT
Statistics
Matches: 50, Mismatches: 5, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
59 22 0.44
60 1 0.02
61 1 0.02
62 26 0.52
ACGTcount: A:0.41, C:0.04, G:0.04, T:0.50
Consensus pattern (59 bp):
TTAATATTAAATTTAATCTAATACTTATCTTGATAAATATTATATTAATTTAATAAGAT
Found at i:95454589 original size:10 final size:10
Alignment explanation
Indices: 95454574--95454606 Score: 66
Period size: 10 Copynumber: 3.3 Consensus size: 10
95454564 GGTTACTTTA
95454574 AAGTTTATAC
1 AAGTTTATAC
95454584 AAGTTTATAC
1 AAGTTTATAC
95454594 AAGTTTATAC
1 AAGTTTATAC
95454604 AAG
1 AAG
95454607 CTTTGGAAAC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 23 1.00
ACGTcount: A:0.42, C:0.09, G:0.12, T:0.36
Consensus pattern (10 bp):
AAGTTTATAC
Found at i:95455435 original size:42 final size:42
Alignment explanation
Indices: 95455360--95455441 Score: 112
Period size: 42 Copynumber: 2.0 Consensus size: 42
95455350 CTAACACACA
*
95455360 GCCTGGCACACGGGCATGTGAGGCAACTCAGAGAGTTACATG
1 GCCTGGCACACGGGCATGTGAGCCAACTCAGAGAGTTACATG
* * *
95455402 GCCTGGCACACGGGCGTGTGA-CCTTACTTAGAGAGTTACA
1 GCCTGGCACACGGGCATGTGAGCC-AACTCAGAGAGTTACA
95455442 CGGGTGAGGA
Statistics
Matches: 35, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
41 1 0.03
42 34 0.97
ACGTcount: A:0.24, C:0.24, G:0.32, T:0.20
Consensus pattern (42 bp):
GCCTGGCACACGGGCATGTGAGCCAACTCAGAGAGTTACATG
Found at i:95458654 original size:33 final size:32
Alignment explanation
Indices: 95458611--95458828 Score: 168
Period size: 33 Copynumber: 6.7 Consensus size: 32
95458601 CTTGAGGTGC
* * *
95458611 ACATTTCCTTTTCAAGTAGTATACACGAAGTGT
1 ACATATCCTTTTCAAGT-GTACACACAAAGTGT
* * * *
95458644 ACATACCCTTTTCAATTTGTACACTCAAAGTGC
1 ACATATCCTTTTCAA-GTGTACACACAAAGTGT
* * * *
95458677 ACATAACCTTTTCAAATGTACACATATAGTGT
1 ACATATCCTTTTCAAGTGTACACACAAAGTGT
* * * *
95458709 ACCTTTCCTTTTCAAGTGGTATACACAAAGTAT
1 ACATATCCTTTTCAAGT-GTACACACAAAGTGT
* * * * *
95458742 ACCTTTCCTTTTCATA-TGGTATACATAAAGTAT
1 ACATATCCTTTTCA-AGT-GTACACACAAAGTGT
* *
95458775 ACCTTTCCTTTTCAAGTGTACACACAAAGTGT
1 ACATATCCTTTTCAAGTGTACACACAAAGTGT
*
95458807 ACATAACCTTTTCAAGTTGTAC
1 ACATATCCTTTTCAAG-TGTAC
95458829 CATTTGGGTA
Statistics
Matches: 152, Mismatches: 28, Indels: 10
0.80 0.15 0.05
Matches are distributed among these distances:
32 51 0.34
33 99 0.65
34 2 0.01
ACGTcount: A:0.31, C:0.22, G:0.11, T:0.36
Consensus pattern (32 bp):
ACATATCCTTTTCAAGTGTACACACAAAGTGT
Found at i:95458738 original size:65 final size:65
Alignment explanation
Indices: 95458650--95458821 Score: 211
Period size: 65 Copynumber: 2.6 Consensus size: 65
95458640 GTGTACATAC
* * * * *
95458650 CCTTTTCAATTTGTACACTCAAAGTGCACATAACCTTTTCAAAT-GTACACATATAGTGTACCTT
1 CCTTTTCAA-GTGTACACACAAAGTGTACATAACCTTTTCAAATGGTACACATAAAGTATACCTT
95458714 T
65 T
* * * ** * *
95458715 CCTTTTCAAGTGGTATACACAAAGTATACCTTTCCTTTTCATATGGTATACATAAAGTATACCTT
1 CCTTTTCAAGT-GTACACACAAAGTGTACATAACCTTTTCAAATGGTACACATAAAGTATACCTT
95458780 T
65 T
95458781 CCTTTTCAAGTGTACACACAAAGTGTACATAACCTTTTCAA
1 CCTTTTCAAGTGTACACACAAAGTGTACATAACCTTTTCAA
95458822 GTTGTACCAT
Statistics
Matches: 87, Mismatches: 18, Indels: 4
0.80 0.17 0.04
Matches are distributed among these distances:
64 1 0.01
65 57 0.66
66 29 0.33
ACGTcount: A:0.31, C:0.22, G:0.10, T:0.37
Consensus pattern (65 bp):
CCTTTTCAAGTGTACACACAAAGTGTACATAACCTTTTCAAATGGTACACATAAAGTATACCTTT
Found at i:95458772 original size:98 final size:98
Alignment explanation
Indices: 95458611--95458823 Score: 223
Period size: 98 Copynumber: 2.2 Consensus size: 98
95458601 CTTGAGGTGC
* * * * *
95458611 ACATTTCCTTTTCAAGTAGTATACACGAAGTGTACATACCCTTTTCAATTTGTACACTCAAAGTG
1 ACATTTCCTTTTCAAGTAGTATACACAAAGTATACATACCCTTTTCAATGTATACACTCAAAGTA
* *
95458676 CACATAACCTTTTCAAATGTACACATATAGTGT
66 CACATAACCTTTTCAAATGTACACACAAAGTGT
* * * **
95458709 ACCTTTCCTTTTCAAGTGGTATACACAAAGTATACCTTTCCTTTTCATATGGTATACA-T-AAAG
1 ACATTTCCTTTTCAAGTAGTATACACAAAGTATACATACCCTTTTCA-AT-GTATACACTCAAAG
* * ** *
95458772 TATACCTTTCCTTTTCAAGTGTACACACAAAGTGT
64 TACACATAACCTTTTCAAATGTACACACAAAGTGT
**
95458807 ACATAACCTTTTCAAGT
1 ACATTTCCTTTTCAAGT
95458824 TGTACCATTT
Statistics
Matches: 93, Mismatches: 20, Indels: 4
0.79 0.17 0.03
Matches are distributed among these distances:
98 85 0.91
99 3 0.03
100 5 0.05
ACGTcount: A:0.31, C:0.22, G:0.11, T:0.36
Consensus pattern (98 bp):
ACATTTCCTTTTCAAGTAGTATACACAAAGTATACATACCCTTTTCAATGTATACACTCAAAGTA
CACATAACCTTTTCAAATGTACACACAAAGTGT
Found at i:95460027 original size:13 final size:13
Alignment explanation
Indices: 95460009--95460034 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
95459999 ACACATAATT
95460009 GATAAAATTTTTC
1 GATAAAATTTTTC
95460022 GATAAAATTTTTC
1 GATAAAATTTTTC
95460035 ATGCAATATT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.08, G:0.08, T:0.46
Consensus pattern (13 bp):
GATAAAATTTTTC
Found at i:95463725 original size:19 final size:19
Alignment explanation
Indices: 95463701--95463741 Score: 64
Period size: 19 Copynumber: 2.2 Consensus size: 19
95463691 TTAAATTGTT
*
95463701 TTATAATATGAAATGAATA
1 TTATAATATGAAAGGAATA
*
95463720 TTATAATATTAAAGGAATA
1 TTATAATATGAAAGGAATA
95463739 TTA
1 TTA
95463742 ATATTATAAC
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.51, C:0.00, G:0.10, T:0.39
Consensus pattern (19 bp):
TTATAATATGAAAGGAATA
Found at i:95465780 original size:39 final size:39
Alignment explanation
Indices: 95465726--95465899 Score: 312
Period size: 39 Copynumber: 4.5 Consensus size: 39
95465716 TTATATGATT
*
95465726 TGGTGTTATATCCGGGCTAAGCCTCGAAGGCATTCGTGC
1 TGGTGTTATATCCGGGCTAAGCCCCGAAGGCATTCGTGC
95465765 TGGTGTTATATCCGGGCTAAGCCCCGAAGGCATTCGTGC
1 TGGTGTTATATCCGGGCTAAGCCCCGAAGGCATTCGTGC
*
95465804 TGGTGTTATATCCGGGCTAAGCCTCGAAGGCATTCGTGC
1 TGGTGTTATATCCGGGCTAAGCCCCGAAGGCATTCGTGC
95465843 TGGTGTTATATCCGGGCTAAGCCCCGAAGGCATTCGTGC
1 TGGTGTTATATCCGGGCTAAGCCCCGAAGGCATTCGTGC
* *
95465882 TGGTATTATATTCGGGCT
1 TGGTGTTATATCCGGGCT
95465900 TAAAGTCCCG
Statistics
Matches: 130, Mismatches: 5, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
39 130 1.00
ACGTcount: A:0.18, C:0.23, G:0.30, T:0.29
Consensus pattern (39 bp):
TGGTGTTATATCCGGGCTAAGCCCCGAAGGCATTCGTGC
Found at i:95487117 original size:44 final size:43
Alignment explanation
Indices: 95487028--95487118 Score: 119
Period size: 44 Copynumber: 2.1 Consensus size: 43
95487018 TCAGTATACA
* * * * *
95487028 CCACAAGGGTCAAGTAAAATACGCCACAAAGGCTAATAGATTG
1 CCACAAGGGTCAAATAAAATACACCACAAAGGCTAACAAAATG
*
95487071 CCACAAGGGTCAAATCATAATACACCACAAAGGCTAACAAAATG
1 CCACAAGGGTCAAAT-AAAATACACCACAAAGGCTAACAAAATG
95487115 CCAC
1 CCAC
95487119 CCAAGTACCC
Statistics
Matches: 41, Mismatches: 6, Indels: 1
0.85 0.12 0.02
Matches are distributed among these distances:
43 14 0.34
44 27 0.66
ACGTcount: A:0.44, C:0.25, G:0.16, T:0.14
Consensus pattern (43 bp):
CCACAAGGGTCAAATAAAATACACCACAAAGGCTAACAAAATG
Found at i:95488693 original size:31 final size:32
Alignment explanation
Indices: 95488651--95488712 Score: 99
Period size: 31 Copynumber: 2.0 Consensus size: 32
95488641 TTTTTTAGGC
**
95488651 CTTTAGCGGCGCTTTTAGGAGCCGCTAAAACT
1 CTTTAGCGGCGCTTTTAAAAGCCGCTAAAACT
95488683 CTTT-GCGGCGCTTTTAAAAGCCGCTAAAAC
1 CTTTAGCGGCGCTTTTAAAAGCCGCTAAAAC
95488713 GTCGCTATAG
Statistics
Matches: 28, Mismatches: 2, Indels: 1
0.90 0.06 0.03
Matches are distributed among these distances:
31 24 0.86
32 4 0.14
ACGTcount: A:0.24, C:0.26, G:0.23, T:0.27
Consensus pattern (32 bp):
CTTTAGCGGCGCTTTTAAAAGCCGCTAAAACT
Found at i:95492158 original size:21 final size:19
Alignment explanation
Indices: 95492133--95492178 Score: 56
Period size: 19 Copynumber: 2.3 Consensus size: 19
95492123 AAGAACATGA
95492133 AGAAAAAGACAAATAATTTTC
1 AGAAAAAGA-AAAT-ATTTTC
**
95492154 AGAAAAAGAGTATATTTTC
1 AGAAAAAGAAAATATTTTC
95492173 AGAAAA
1 AGAAAA
95492179 CCATAAACAG
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
19 12 0.52
20 2 0.09
21 9 0.39
ACGTcount: A:0.57, C:0.07, G:0.13, T:0.24
Consensus pattern (19 bp):
AGAAAAAGAAAATATTTTC
Found at i:95492916 original size:58 final size:59
Alignment explanation
Indices: 95492848--95492962 Score: 180
Period size: 58 Copynumber: 2.0 Consensus size: 59
95492838 TTTGTGGCAT
95492848 TTGTTTAATTTTAT-TTTTTTTAAAATTTTTAACATATA-TTTTTTATTTTTTTCTTTTA
1 TTGTTTAATTTTATGTTTTTTT-AAATTTTTAACATATATTTTTTTATTTTTTTCTTTTA
** *
95492906 TTGTTTAATTTTATGTTTTTTTTCATTTTTAACATTTATTTTTTTATTTTTTTCTTT
1 TTGTTTAATTTTATGTTTTTTTAAATTTTTAACATATATTTTTTTATTTTTTTCTTT
95492963 CAAATTTTTT
Statistics
Matches: 52, Mismatches: 3, Indels: 3
0.90 0.05 0.05
Matches are distributed among these distances:
58 27 0.52
59 25 0.48
ACGTcount: A:0.20, C:0.04, G:0.03, T:0.73
Consensus pattern (59 bp):
TTGTTTAATTTTATGTTTTTTTAAATTTTTAACATATATTTTTTTATTTTTTTCTTTTA
Found at i:95492943 original size:25 final size:24
Alignment explanation
Indices: 95492889--95492950 Score: 63
Period size: 25 Copynumber: 2.5 Consensus size: 24
95492879 ACATATATTT
* *
95492889 TTTATTTTTTTCTTTTATTGTTTAAT
1 TTTA-TTTTTT-TTTCATTGTTTAAA
95492915 TTTATGTTTTTTTTCATT-TTTAACA
1 TTTAT-TTTTTTTTCATTGTTTAA-A
95492940 TTTATTTTTTT
1 TTTATTTTTTT
95492951 ATTTTTTTCT
Statistics
Matches: 32, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
24 11 0.34
25 12 0.38
26 9 0.28
ACGTcount: A:0.16, C:0.05, G:0.03, T:0.76
Consensus pattern (24 bp):
TTTATTTTTTTTTCATTGTTTAAA
Found at i:95493058 original size:15 final size:15
Alignment explanation
Indices: 95493047--95493111 Score: 67
Period size: 15 Copynumber: 4.2 Consensus size: 15
95493037 ATATTAAATA
*
95493047 TTAAATTTTTAAGTTT
1 TTAAA-TTTTAAATTT
* *
95493063 TTAATTTTTTAATTT
1 TTAAATTTTAAATTT
95493078 TTAAATTTTTAAATTT
1 TTAAA-TTTTAAATTT
* *
95493094 TTTAATTTTAATTTT
1 TTAAATTTTAAATTT
95493109 TTA
1 TTA
95493112 TTTTTATTTT
Statistics
Matches: 40, Mismatches: 8, Indels: 3
0.78 0.16 0.06
Matches are distributed among these distances:
15 23 0.57
16 17 0.43
ACGTcount: A:0.31, C:0.00, G:0.02, T:0.68
Consensus pattern (15 bp):
TTAAATTTTAAATTT
Found at i:95493094 original size:23 final size:22
Alignment explanation
Indices: 95493040--95493121 Score: 80
Period size: 23 Copynumber: 3.7 Consensus size: 22
95493030 GACTAAAATA
* *
95493040 TTAAATATTAAATTTTTAAGTTT
1 TTAAATTTTTAATTTTTAA-TTT
*
95493063 TTAATTTTTTAATTTTTAAATTT
1 TTAAATTTTTAATTTTT-AATTT
95493086 TTAAATTTTTTAA-TTTTAATTT
1 TTAAA-TTTTTAATTTTTAATTT
*
95493108 TT-TATTTTT-ATTTT
1 TTAAATTTTTAATTTT
95493122 GATTTAATGT
Statistics
Matches: 51, Mismatches: 5, Indels: 9
0.78 0.08 0.14
Matches are distributed among these distances:
19 1 0.02
20 8 0.16
21 1 0.02
22 7 0.14
23 25 0.49
24 9 0.18
ACGTcount: A:0.30, C:0.00, G:0.01, T:0.68
Consensus pattern (22 bp):
TTAAATTTTTAATTTTTAATTT
Found at i:95493116 original size:8 final size:8
Alignment explanation
Indices: 95493047--95493116 Score: 83
Period size: 8 Copynumber: 9.1 Consensus size: 8
95493037 ATATTAAATA
*
95493047 TTAAATTT
1 TTAATTTT
*
95493055 TTAAGTTT
1 TTAATTTT
95493063 TTAATTTT
1 TTAATTTT
95493071 TTAATTTT
1 TTAATTTT
*
95493079 TAAATTTT
1 TTAATTTT
*
95493087 TAAATTTT
1 TTAATTTT
95493095 TTAA--TT
1 TTAATTTT
95493101 TTAATTTT
1 TTAATTTT
95493109 TT-ATTTT
1 TTAATTTT
95493116 T
1 T
95493117 ATTTTGATTT
Statistics
Matches: 56, Mismatches: 4, Indels: 5
0.86 0.06 0.08
Matches are distributed among these distances:
6 6 0.11
7 6 0.11
8 44 0.79
ACGTcount: A:0.29, C:0.00, G:0.01, T:0.70
Consensus pattern (8 bp):
TTAATTTT
Found at i:95493129 original size:30 final size:30
Alignment explanation
Indices: 95493048--95493117 Score: 90
Period size: 30 Copynumber: 2.3 Consensus size: 30
95493038 TATTAAATAT
*
95493048 TAAATTTTT-AAGTTTTTAATTTTTTAATTTT
1 TAAATTTTTAAATTTTTTAA--TTTTAATTTT
95493079 TAAATTTTTAAATTTTTTAATTTTAATTTT
1 TAAATTTTTAAATTTTTTAATTTTAATTTT
*
95493109 T-TATTTTTA
1 TAAATTTTTA
95493118 TTTTGATTTA
Statistics
Matches: 36, Mismatches: 2, Indels: 4
0.86 0.05 0.10
Matches are distributed among these distances:
29 7 0.19
30 11 0.31
31 9 0.25
32 9 0.25
ACGTcount: A:0.30, C:0.00, G:0.01, T:0.69
Consensus pattern (30 bp):
TAAATTTTTAAATTTTTTAATTTTAATTTT
Found at i:95493721 original size:15 final size:15
Alignment explanation
Indices: 95493698--95493748 Score: 50
Period size: 15 Copynumber: 3.5 Consensus size: 15
95493688 ATACCCATGG
*
95493698 CCATTAAACCTTAAA
1 CCATAAAACCTTAAA
*
95493713 CCATAAAACCCTAAA
1 CCATAAAACCTTAAA
* *
95493728 CTAT-AGACCTTAAA
1 CCATAAAACCTTAAA
*
95493742 CCTTAAA
1 CCATAAA
95493749 TATTAAACTC
Statistics
Matches: 27, Mismatches: 8, Indels: 2
0.73 0.22 0.05
Matches are distributed among these distances:
14 10 0.37
15 17 0.63
ACGTcount: A:0.47, C:0.27, G:0.02, T:0.24
Consensus pattern (15 bp):
CCATAAAACCTTAAA
Found at i:95494048 original size:39 final size:39
Alignment explanation
Indices: 95493997--95494073 Score: 136
Period size: 39 Copynumber: 2.0 Consensus size: 39
95493987 GTTATATAAC
* *
95493997 TTTTAGCGGCGTTTTACCAAAAGCGCCGCTATTGCTCTT
1 TTTTAGCGGCGTTTTACCAAAAACACCGCTATTGCTCTT
95494036 TTTTAGCGGCGTTTTACCAAAAACACCGCTATTGCTCT
1 TTTTAGCGGCGTTTTACCAAAAACACCGCTATTGCTCT
95494074 GCATTTTACA
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
39 36 1.00
ACGTcount: A:0.21, C:0.26, G:0.18, T:0.35
Consensus pattern (39 bp):
TTTTAGCGGCGTTTTACCAAAAACACCGCTATTGCTCTT
Found at i:95495284 original size:57 final size:57
Alignment explanation
Indices: 95495196--95495314 Score: 238
Period size: 57 Copynumber: 2.1 Consensus size: 57
95495186 TGGTCCATAA
95495196 ACTTTTGATTAATATGTCCATCCAGGATCATGAGAAACAACCATAATTATAAATGCG
1 ACTTTTGATTAATATGTCCATCCAGGATCATGAGAAACAACCATAATTATAAATGCG
95495253 ACTTTTGATTAATATGTCCATCCAGGATCATGAGAAACAACCATAATTATAAATGCG
1 ACTTTTGATTAATATGTCCATCCAGGATCATGAGAAACAACCATAATTATAAATGCG
95495310 ACTTT
1 ACTTT
95495315 ACTCCAGTAT
Statistics
Matches: 62, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
57 62 1.00
ACGTcount: A:0.38, C:0.18, G:0.13, T:0.31
Consensus pattern (57 bp):
ACTTTTGATTAATATGTCCATCCAGGATCATGAGAAACAACCATAATTATAAATGCG
Found at i:95500328 original size:43 final size:43
Alignment explanation
Indices: 95500260--95500366 Score: 128
Period size: 43 Copynumber: 2.5 Consensus size: 43
95500250 TTTATTTGAA
*
95500260 AAAACGCCAC-AAAAGATCATGGCTTTTAGTGGCATTTGTGGG-
1 AAAACGCCGCTAAAAG-TCATGGCTTTTAGTGGCATTTGTGGGT
* * * *
95500302 AAAAGTGCCTCTAAAAGTCATGGCTTTTAGTGGCGTTTTTGGGT
1 AAAA-CGCCGCTAAAAGTCATGGCTTTTAGTGGCATTTGTGGGT
*
95500346 GAAACGCCGCTAAAAGTCATG
1 AAAACGCCGCTAAAAGTCATG
95500367 ATTCGCTTTT
Statistics
Matches: 55, Mismatches: 7, Indels: 5
0.82 0.10 0.07
Matches are distributed among these distances:
42 4 0.07
43 43 0.78
44 8 0.15
ACGTcount: A:0.29, C:0.17, G:0.26, T:0.28
Consensus pattern (43 bp):
AAAACGCCGCTAAAAGTCATGGCTTTTAGTGGCATTTGTGGGT
Found at i:95500483 original size:31 final size:31
Alignment explanation
Indices: 95500448--95500507 Score: 102
Period size: 31 Copynumber: 1.9 Consensus size: 31
95500438 TTCTGTATTA
*
95500448 AATCCAACCAAAAACAGCAAATATAGCATTG
1 AATCCAACCAAAAACAACAAATATAGCATTG
*
95500479 AATCCAACCAAAAACAACAAATGTAGCAT
1 AATCCAACCAAAAACAACAAATATAGCAT
95500508 AAAAAATATA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
31 27 1.00
ACGTcount: A:0.53, C:0.23, G:0.08, T:0.15
Consensus pattern (31 bp):
AATCCAACCAAAAACAACAAATATAGCATTG
Found at i:95500784 original size:21 final size:21
Alignment explanation
Indices: 95500760--95500817 Score: 71
Period size: 21 Copynumber: 2.8 Consensus size: 21
95500750 TCTGCTGCCA
95500760 TCGCTGCTGCCTCTACCTCCC
1 TCGCTGCTGCCTCTACCTCCC
* * *
95500781 TCGCTGCTGCCACTGCCTTCC
1 TCGCTGCTGCCTCTACCTCCC
* *
95500802 TCGCTGTTGCATCTAC
1 TCGCTGCTGCCTCTAC
95500818 TTTAAGTTGT
Statistics
Matches: 30, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
21 30 1.00
ACGTcount: A:0.07, C:0.45, G:0.17, T:0.31
Consensus pattern (21 bp):
TCGCTGCTGCCTCTACCTCCC
Found at i:95501250 original size:13 final size:14
Alignment explanation
Indices: 95501223--95501251 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
95501213 ACTAACGACG
95501223 AATTAAACTATTAT
1 AATTAAACTATTAT
95501237 AATTAAAC-ATTAT
1 AATTAAACTATTAT
95501250 AA
1 AA
95501252 ATATTTGTAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 7 0.47
14 8 0.53
ACGTcount: A:0.55, C:0.07, G:0.00, T:0.38
Consensus pattern (14 bp):
AATTAAACTATTAT
Found at i:95506267 original size:9 final size:9
Alignment explanation
Indices: 95506257--95506434 Score: 127
Period size: 9 Copynumber: 19.4 Consensus size: 9
95506247 TATAATTAAG
*
95506257 TTATGTAAG
1 TTATGTAAA
95506266 TTATGTAAA
1 TTATGTAAA
95506275 TTATGT-AA
1 TTATGTAAA
* *
95506283 TTATCTGAA
1 TTATGTAAA
95506292 TTATGTAAA
1 TTATGTAAA
95506301 TTATGTAAGA
1 TTATGTAA-A
95506311 -TATGATATATA
1 TTATG-TA-A-A
95506322 TTTATGT--A
1 -TTATGTAAA
*
95506330 TTATGTAAG
1 TTATGTAAA
95506339 TTATGTAAA
1 TTATGTAAA
*
95506348 TTATGTAAG
1 TTATGTAAA
* **
95506357 TTATTTATC
1 TTATGTAAA
*
95506366 TTATGCAAA
1 TTATGTAAA
95506375 TTATGTACAA
1 TTATGTA-AA
95506385 -TATGATATATA
1 TTATG-TA-A-A
95506396 TTTATGT--A
1 -TTATGTAAA
*
95506404 TTATGTAAG
1 TTATGTAAA
95506413 TTATGTAAA
1 TTATGTAAA
95506422 TTATGTAAA
1 TTATGTAAA
95506431 TTAT
1 TTAT
95506435 TTAAGATATG
Statistics
Matches: 135, Mismatches: 19, Indels: 30
0.73 0.10 0.16
Matches are distributed among these distances:
7 12 0.09
8 9 0.07
9 93 0.69
10 8 0.06
11 3 0.02
12 2 0.01
13 8 0.06
ACGTcount: A:0.38, C:0.02, G:0.13, T:0.47
Consensus pattern (9 bp):
TTATGTAAA
Found at i:95506336 original size:38 final size:37
Alignment explanation
Indices: 95506257--95506422 Score: 157
Period size: 38 Copynumber: 4.5 Consensus size: 37
95506247 TATAATTAAG
* * * *
95506257 TTATGTAAGTTATGTAAATTATG-TA-AT-TATCTGAA
1 TTATGTAAATTATGTAAA-TATGATATATATTTATGTA
95506292 TTATGTAAATTATGTAAGATATGATATATATTTATGTA
1 TTATGTAAATTATGTAA-ATATGATATATATTTATGTA
* *
95506330 TTATGTAAGTTATGTAAATTATG-TA-AGTTATTTA--TC
1 TTATGTAAATTATGTAAA-TATGATATA--TATTTATGTA
*
95506366 TTATGCAAATTATGTACAATATGATATATATTTATGTA
1 TTATGTAAATTATGTA-AATATGATATATATTTATGTA
*
95506404 TTATGTAAGTTATGTAAAT
1 TTATGTAAATTATGTAAAT
95506423 TATGTAAATT
Statistics
Matches: 108, Mismatches: 11, Indels: 22
0.77 0.08 0.16
Matches are distributed among these distances:
35 20 0.19
36 29 0.27
37 12 0.11
38 47 0.44
ACGTcount: A:0.37, C:0.02, G:0.13, T:0.47
Consensus pattern (37 bp):
TTATGTAAATTATGTAAATATGATATATATTTATGTA
Found at i:95506394 original size:74 final size:72
Alignment explanation
Indices: 95506257--95506438 Score: 285
Period size: 74 Copynumber: 2.5 Consensus size: 72
95506247 TATAATTAAG
* *
95506257 TTATGTAAGTTATGTAAATTATGTAATTATCTGAATTATGTAAATTATGTAAGATATGATATATA
1 TTATGTAAGTTATGTAAATTATGTAATTAT-TTAATTATGCAAATTATGTAAGATATGATATATA
95506322 TTTATGTA
65 TTTATGTA
*
95506330 TTATGTAAGTTATGTAAATTATGTAAGTTATTTATCTTATGCAAATTATGTACA-ATATGATATA
1 TTATGTAAGTTATGTAAATTATGTAA-TTATTTA-ATTATGCAAATTATGTA-AGATATGATATA
95506394 TATTTATGTA
63 TATTTATGTA
95506404 TTATGTAAGTTATGTAAATTATGTAAATTATTTAA
1 TTATGTAAGTTATGTAAATTATGT-AATTATTTAA
95506439 GATATGATAT
Statistics
Matches: 101, Mismatches: 4, Indels: 8
0.89 0.04 0.07
Matches are distributed among these distances:
73 28 0.28
74 70 0.69
75 3 0.03
ACGTcount: A:0.38, C:0.02, G:0.13, T:0.47
Consensus pattern (72 bp):
TTATGTAAGTTATGTAAATTATGTAATTATTTAATTATGCAAATTATGTAAGATATGATATATAT
TTATGTA
Found at i:95506407 original size:56 final size:56
Alignment explanation
Indices: 95506347--95506458 Score: 163
Period size: 56 Copynumber: 2.0 Consensus size: 56
95506337 AGTTATGTAA
* **
95506347 ATTATGTAAGTTATTTATCTTATGCAAATTATGTACA-ATATGATATATATTTATGT
1 ATTATGTAAGTTATGTAAATTATGCAAATTATGTA-AGATATGATATATATTTATGT
* *
95506403 ATTATGTAAGTTATGTAAATTATGTAAATTATTTAAGATATGATATATATTTATGT
1 ATTATGTAAGTTATGTAAATTATGCAAATTATGTAAGATATGATATATATTTATGT
95506459 TGATGGGATT
Statistics
Matches: 50, Mismatches: 5, Indels: 2
0.88 0.09 0.04
Matches are distributed among these distances:
55 1 0.02
56 49 0.98
ACGTcount: A:0.38, C:0.03, G:0.12, T:0.48
Consensus pattern (56 bp):
ATTATGTAAGTTATGTAAATTATGCAAATTATGTAAGATATGATATATATTTATGT
Found at i:95506938 original size:100 final size:100
Alignment explanation
Indices: 95506711--95506993 Score: 437
Period size: 99 Copynumber: 2.8 Consensus size: 100
95506701 AAATATTTAA
* * * * *
95506711 AAATAAAATTTAATTTAATTAGGTTATTTAACAATAAAATAAAAGTAAACAAA-ATATTTTCGTG
1 AAATACAATTTAATTTAATTAGGTAATTTAAAAATAAAATAAAAGTAGACAAATATTTTTTCGTG
95506775 ATTAAAATAAAATAAAATATTTAAAATAAAACTTT
66 ATTAAAATAAAATAAAATATTTAAAATAAAACTTT
* *
95506810 AAATACAATTTAATTTAATTAGGAAATTTAAAAATAAAATAAAAGTAGACAAATTATTTTTTTGT
1 AAATACAATTTAATTTAATTAGGTAATTTAAAAATAAAATAAAAGTAGACAAA-TATTTTTTCGT
*
95506875 GATTAAAATAAAATAAAATATTTAAAA-AGAACTTT
65 GATTAAAATAAAATAAAATATTTAAAATAAAACTTT
* *
95506910 AAATACAATTTGATTTAATTAGGTAATTTAAAATTAAAATAAAAGTAGACAAA-ATATTTTTCGT
1 AAATACAATTTAATTTAATTAGGTAATTTAAAAATAAAATAAAAGTAGACAAATAT-TTTTTCGT
95506974 GATTAAAATAAAATAAAATA
65 GATTAAAATAAAATAAAATA
95506994 AAATAACATA
Statistics
Matches: 169, Mismatches: 12, Indels: 6
0.90 0.06 0.03
Matches are distributed among these distances:
98 2 0.01
99 75 0.44
100 57 0.34
101 35 0.21
ACGTcount: A:0.54, C:0.04, G:0.07, T:0.35
Consensus pattern (100 bp):
AAATACAATTTAATTTAATTAGGTAATTTAAAAATAAAATAAAAGTAGACAAATATTTTTTCGTG
ATTAAAATAAAATAAAATATTTAAAATAAAACTTT
Found at i:95510428 original size:16 final size:17
Alignment explanation
Indices: 95510409--95510445 Score: 67
Period size: 16 Copynumber: 2.2 Consensus size: 17
95510399 TAAGCTAAGT
95510409 TTAAATCATT-AAAACA
1 TTAAATCATTAAAAACA
95510425 TTAAATCATTAAAAACA
1 TTAAATCATTAAAAACA
95510442 TTAA
1 TTAA
95510446 TTTTCAATTG
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
16 10 0.50
17 10 0.50
ACGTcount: A:0.57, C:0.11, G:0.00, T:0.32
Consensus pattern (17 bp):
TTAAATCATTAAAAACA
Found at i:95511815 original size:21 final size:21
Alignment explanation
Indices: 95511759--95511822 Score: 74
Period size: 21 Copynumber: 3.0 Consensus size: 21
95511749 CCTTAGAACC
*
95511759 ATTAACACTAAGACCTTAAACT
1 ATTAACACTAA-ACCATAAACT
*
95511781 ATAAAACACTAAACCATAAACT
1 AT-TAACACTAAACCATAAACT
* *
95511803 ATTAACCCTAAACCCTAAAC
1 ATTAACACTAAACCATAAAC
95511823 CCAAAATAAC
Statistics
Matches: 36, Mismatches: 5, Indels: 3
0.82 0.11 0.07
Matches are distributed among these distances:
21 15 0.42
22 13 0.36
23 8 0.22
ACGTcount: A:0.50, C:0.27, G:0.02, T:0.22
Consensus pattern (21 bp):
ATTAACACTAAACCATAAACT
Found at i:95511941 original size:28 final size:28
Alignment explanation
Indices: 95511910--95511976 Score: 73
Period size: 28 Copynumber: 2.4 Consensus size: 28
95511900 TTATATACCC
* *
95511910 TAAACCTTAAACCCAAAATAAC-AAACCT
1 TAAACCATAAACCCAAAAT-ACTAAACAT
**
95511938 TAAACCATAAACTTAAAATACTAAACAT
1 TAAACCATAAACCCAAAATACTAAACAT
*
95511966 TAAACCCTAAA
1 TAAACCATAAA
95511977 TTGTAAGTAA
Statistics
Matches: 33, Mismatches: 5, Indels: 2
0.82 0.12 0.05
Matches are distributed among these distances:
27 2 0.06
28 31 0.94
ACGTcount: A:0.55, C:0.24, G:0.00, T:0.21
Consensus pattern (28 bp):
TAAACCATAAACCCAAAATACTAAACAT
Found at i:95512679 original size:18 final size:17
Alignment explanation
Indices: 95512656--95512690 Score: 52
Period size: 17 Copynumber: 2.0 Consensus size: 17
95512646 AAAGGCAGTT
*
95512656 TCAAATATCAAAATAAAA
1 TCAAAT-TCAAAACAAAA
95512674 TCAAATTCAAAACAAAA
1 TCAAATTCAAAACAAAA
95512691 ATAAGAAAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 10 0.62
18 6 0.38
ACGTcount: A:0.66, C:0.14, G:0.00, T:0.20
Consensus pattern (17 bp):
TCAAATTCAAAACAAAA
Found at i:95512842 original size:41 final size:40
Alignment explanation
Indices: 95512767--95512884 Score: 110
Period size: 41 Copynumber: 2.9 Consensus size: 40
95512757 ATGGCTGCTC
* * * * *
95512767 AACTTTTTGCGGCATTTGGACCAAAAAAGTCGCTATAGAT
1 AACTTTTTGCGGCGTTTTGACCAGAAACGCCGCTATAGAT
* *
95512807 AAACTTTTTGCGGCGTTTTGACCAGAAACGCCGCTATTGCT
1 -AACTTTTTGCGGCGTTTTGACCAGAAACGCCGCTATAGAT
*** * *
95512848 TGGTTTTTAGTGGCGTTTTGACCAGAAACACCGCTAT
1 AACTTTTT-GCGGCGTTTTGACCAGAAACGCCGCTAT
95512885 TGCTCGGTTT
Statistics
Matches: 64, Mismatches: 12, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
40 5 0.08
41 59 0.92
ACGTcount: A:0.25, C:0.20, G:0.22, T:0.32
Consensus pattern (40 bp):
AACTTTTTGCGGCGTTTTGACCAGAAACGCCGCTATAGAT
Found at i:95512885 original size:41 final size:41
Alignment explanation
Indices: 95512818--95513315 Score: 384
Period size: 41 Copynumber: 12.1 Consensus size: 41
95512808 AACTTTTTGC
*
95512818 GGCGTTTTGACCAGAAACGCCGCTATTGCTTGGTTTTTAGT
1 GGCGTTTTGACCAGAAACGCCGCTATTGCTCGGTTTTTAGT
* *
95512859 GGCGTTTTGACCAGAAACACCGCTATTGCTCGGTTTTTAAT
1 GGCGTTTTGACCAGAAACGCCGCTATTGCTCGGTTTTTAGT
* * * *
95512900 GGCGTTTTTTTATCAGAAACACAGCTATTGCTCGGTTTTTAGT
1 GGCG--TTTTGACCAGAAACGCCGCTATTGCTCGGTTTTTAGT
* * * * * *
95512943 GGCATTTAGACCAGAAACGCCACTATTTCTCAGTTTTTAAT
1 GGCGTTTTGACCAGAAACGCCGCTATTGCTCGGTTTTTAGT
* * * *
95512984 GGCGTTTGGACTAGAAATGCCGCTATTGCTCGATTTTTAGT
1 GGCGTTTTGACCAGAAACGCCGCTATTGCTCGGTTTTTAGT
* * ** * *
95513025 GGCGTTATGATCAGAAACGCCGCTATTGCTTAGTTCTTGGT
1 GGCGTTTTGACCAGAAACGCCGCTATTGCTCGGTTTTTAGT
* * * * * * *
95513066 GGTGTTATGATCAGAAACGCCGCTATTGCTTGGGTCTTGGT
1 GGCGTTTTGACCAGAAACGCCGCTATTGCTCGGTTTTTAGT
* * * * *
95513107 GGCGTTTAGACCAGAAACGCCGCAATTTCTTGGTTCTTAGT
1 GGCGTTTTGACCAGAAACGCCGCTATTGCTCGGTTTTTAGT
* * * * *
95513148 GGCGTTTGGGCCTGAAACGCCGCTATTACTCGATTTTTAGT
1 GGCGTTTTGACCAGAAACGCCGCTATTGCTCGGTTTTTAGT
* ** * * * * *
95513189 GGTGTTAGGATCAGAAGCGCTGCTAGTGCTCGGTTCTTAGT
1 GGCGTTTTGACCAGAAACGCCGCTATTGCTCGGTTTTTAGT
* * * **** * * * * *
95513230 GGTGTTTGGACTAGAAATATTGCTGTTTCTCAGTTTTTCGC
1 GGCGTTTTGACCAGAAACGCCGCTATTGCTCGGTTTTTAGT
* * * * **
95513271 GGCATTTTGACCAAAAACACCACTATTGCTCAATTTTTAGT
1 GGCGTTTTGACCAGAAACGCCGCTATTGCTCGGTTTTTAGT
95513312 GGCG
1 GGCG
95513316 CTTTATTCAA
Statistics
Matches: 360, Mismatches: 95, Indels: 4
0.78 0.21 0.01
Matches are distributed among these distances:
41 324 0.90
43 36 0.10
ACGTcount: A:0.21, C:0.19, G:0.25, T:0.35
Consensus pattern (41 bp):
GGCGTTTTGACCAGAAACGCCGCTATTGCTCGGTTTTTAGT
Found at i:95517999 original size:75 final size:75
Alignment explanation
Indices: 95517876--95518027 Score: 268
Period size: 75 Copynumber: 2.0 Consensus size: 75
95517866 TCCTCAAAAT
* *
95517876 GTGGGTGACAAAACTATATGGAAAAGTTCTTAACCAAGTATCATTACCAATGGCCCTATCCAATC
1 GTGGGTGACAAAACTATACGAAAAAGTTCTTAACCAAGTATCATTACCAATGGCCCTATCCAATC
*
95517941 CTTCATATAG
66 CTTCATACAG
*
95517951 GTGGGTGACAAAACTGTACGAAAAAGTTCTTAACCAAGTATCATTACCAATGGCCCTATCCAATC
1 GTGGGTGACAAAACTATACGAAAAAGTTCTTAACCAAGTATCATTACCAATGGCCCTATCCAATC
95518016 CTTCATACAG
66 CTTCATACAG
95518026 GT
1 GT
95518028 CCCCTCTATG
Statistics
Matches: 73, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
75 73 1.00
ACGTcount: A:0.34, C:0.22, G:0.16, T:0.27
Consensus pattern (75 bp):
GTGGGTGACAAAACTATACGAAAAAGTTCTTAACCAAGTATCATTACCAATGGCCCTATCCAATC
CTTCATACAG
Found at i:95521817 original size:46 final size:44
Alignment explanation
Indices: 95521700--95521868 Score: 153
Period size: 46 Copynumber: 3.7 Consensus size: 44
95521690 CGAGAGCTAG
* * *
95521700 TGTAAGACATGTTTGGGACATGCATCGGCCT-CGAGATATAAGCCAA
1 TGTAAGACATGTCTGGGACATGCATCGG-CTACGAGATGT--GTCAA
* * *
95521746 TGTAAGACGTGTCTGAGACATGCATCGGCTACGAGATGTGTCAG
1 TGTAAGACATGTCTGGGACATGCATCGGCTACGAGATGTGTCAA
* *
95521790 TGTAAGACCATGTCTGGGATATAGCATCGGC-ACGTATAGAGGTGTCAA
1 TGTAAGA-CATGTCTGGGACAT-GCATCGGCTACG---AGATGTGTCAA
*
95521838 TGTAAGACCATGTCTTGGACATGGCATCGGC
1 TGTAAGA-CATGTCTGGGACAT-GCATCGGC
95521869 ATAGATATAT
Statistics
Matches: 103, Mismatches: 14, Indels: 10
0.81 0.11 0.08
Matches are distributed among these distances:
44 10 0.10
45 16 0.16
46 40 0.39
48 37 0.36
ACGTcount: A:0.27, C:0.19, G:0.29, T:0.25
Consensus pattern (44 bp):
TGTAAGACATGTCTGGGACATGCATCGGCTACGAGATGTGTCAA
Found at i:95521842 original size:48 final size:48
Alignment explanation
Indices: 95521743--95521918 Score: 159
Period size: 48 Copynumber: 3.7 Consensus size: 48
95521733 AGATATAAGC
* * *
95521743 CAATGTAAGA-CGTGTCTGAGACAT-GCATCGGCTACG---AGATGTGT
1 CAATGTAAGACCATGTCTGGGACATAGCATCGGC-ACGTATAGAGGTGT
* *
95521787 CAGTGTAAGACCATGTCTGGGATATAGCATCGGCACGTATAGAGGTGT
1 CAATGTAAGACCATGTCTGGGACATAGCATCGGCACGTATAGAGGTGT
* * *
95521835 CAATGTAAGACCATGTCTTGGACATGGCATCGGCATAGATATATGAGAGT-T
1 CAATGTAAGACCATGTCTGGGACATAGCATCGGCA-CG-TATA-GAG-GTGT
* * *
95521886 -AGTGTAAGACCATGTCTAGGACATAGCGTCGGC
1 CAATGTAAGACCATGTCTGGGACATAGCATCGGC
95521919 CTCAATTTCG
Statistics
Matches: 109, Mismatches: 14, Indels: 12
0.81 0.10 0.09
Matches are distributed among these distances:
44 9 0.08
45 14 0.13
46 8 0.07
48 38 0.35
49 1 0.01
50 33 0.30
51 4 0.04
52 2 0.02
ACGTcount: A:0.28, C:0.18, G:0.29, T:0.25
Consensus pattern (48 bp):
CAATGTAAGACCATGTCTGGGACATAGCATCGGCACGTATAGAGGTGT
Found at i:95521900 original size:50 final size:50
Alignment explanation
Indices: 95521788--95521966 Score: 158
Period size: 50 Copynumber: 3.6 Consensus size: 50
95521778 GAGATGTGTC
* * *
95521788 AGTGTAAGACCATGTCTGGGATATAGCATCGGCA-CG-TATA-GAG-GTGT
1 AGTGTAAGACCATGTCTTGGACATAGCATCGGCATAGATATATGAGAGT-T
* *
95521835 CAATGTAAGACCATGTCTTGGACATGGCATCGGCATAGATATATGAGAGTT
1 -AGTGTAAGACCATGTCTTGGACATAGCATCGGCATAGATATATGAGAGTT
* * * * *
95521886 AGTGTAAGACCATGTCTAGGACATAGCGTCGGCCTCA-AT-T-TCGATAGCT
1 AGTGTAAGACCATGTCTTGGACATAGCATCGGCAT-AGATATAT-GAGAGTT
*
95521935 AGTGTAAGACCATGT-TTGGTACATGGCATCGG
1 AGTGTAAGACCATGTCTTGG-ACATAGCATCGG
95521967 TATTATACCC
Statistics
Matches: 109, Mismatches: 15, Indels: 13
0.80 0.11 0.09
Matches are distributed among these distances:
48 34 0.31
49 32 0.29
50 36 0.33
51 5 0.05
52 2 0.02
ACGTcount: A:0.28, C:0.17, G:0.28, T:0.27
Consensus pattern (50 bp):
AGTGTAAGACCATGTCTTGGACATAGCATCGGCATAGATATATGAGAGTT
Found at i:95523177 original size:20 final size:21
Alignment explanation
Indices: 95523138--95523177 Score: 73
Period size: 21 Copynumber: 2.0 Consensus size: 21
95523128 GTTATAATAG
95523138 CCACACGGGCGTGTTACCCTT
1 CCACACGGGCGTGTTACCCTT
95523159 CCACACGGGCGTG-TACCCT
1 CCACACGGGCGTGTTACCCT
95523178 GTTTCAAGGG
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 6 0.32
21 13 0.68
ACGTcount: A:0.15, C:0.40, G:0.25, T:0.20
Consensus pattern (21 bp):
CCACACGGGCGTGTTACCCTT
Found at i:95528694 original size:47 final size:43
Alignment explanation
Indices: 95528584--95528711 Score: 139
Period size: 47 Copynumber: 2.8 Consensus size: 43
95528574 TTATTTGTGT
*
95528584 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCACATTAAGAGA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGG---CATTAAAAGA
* **
95528630 GCCAGTGTAAGACCATGTCTATGACATGGCATCGGCATTGAGACAAGA
1 GCTAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCATT-A-A-AAGA
*
95528678 GCTAGTGTAAGACATGTTTGGGACATGCATCGGC
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGC
95528712 CTCGAGATGT
Statistics
Matches: 69, Mismatches: 8, Indels: 10
0.79 0.09 0.11
Matches are distributed among these distances:
45 4 0.06
46 20 0.29
47 24 0.35
48 21 0.30
ACGTcount: A:0.29, C:0.20, G:0.29, T:0.23
Consensus pattern (43 bp):
GCTAGTGTAAGACATGTCTGGGACATGCATCGGCATTAAAAGA
Done.