Tandem Repeats Finder Program written by: Gary Benson Program in Bioinformatics Boston University Version 4.09 Sequence: Gbar_A06 Parameters: 2 7 7 80 10 50 1000 Pmatch=0.80,Pindel=0.10 tuple sizes 0,4,5,7 tuple distances 0, 29, 159, 1000 Length: 115140250 ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32 Warning! 2234201 characters in sequence are not A, C, G, or T File 280 of 345 Found at i:95528826 original size:48 final size:48 Alignment explanation
Indices: 95528766--95528902 Score: 186 Period size: 48 Copynumber: 2.9 Consensus size: 48 95528756 GTTACGAGAT 95528766 GTGTCAGTGTAAGACCATGTCTGGGATATGGCATCAGCACGTATAGAG 1 GTGTCAGTGTAAGACCATGTCTGGGATATGGCATCAGCACGTATAGAG * ** 95528814 GTGTTAGTGTAAGACCATGTCTGGGATATGGC-TTTGTCACGTATAGAG 1 GTGTCAGTGTAAGACCATGTCTGGGATATGGCATCAG-CACGTATAGAG * * * * * 95528862 GTGTCAGTGTAAGACCATATTTGGGACATGACATCGGCACG 1 GTGTCAGTGTAAGACCATGTCTGGGATATGGCATCAGCACG 95528903 GATATGTGAG Statistics Matches: 77, Mismatches: 10, Indels: 4 0.85 0.11 0.04 Matches are distributed among these distances: 47 2 0.03 48 73 0.95 49 2 0.03 ACGTcount: A:0.26, C:0.16, G:0.31, T:0.28 Consensus pattern (48 bp): GTGTCAGTGTAAGACCATGTCTGGGATATGGCATCAGCACGTATAGAG Found at i:95529045 original size:50 final size:49 Alignment explanation
Indices: 95528989--95529123 Score: 155 Period size: 49 Copynumber: 2.7 Consensus size: 49 95528979 ATAGAGGTGT * * 95528989 TAGTGTAAGCCCATGTCTGGGACATAGCATCGGCATGGATATGT-GAGAGC 1 TAGTGTAAGACCATGTCTGGGACATAGCATCGGCATCGAT-T-TCGAGAGC * * * * * 95529039 TAGTGTAAGACCATGTCTAGGACATGGCATCAGCCTCGATTTCGATAGC 1 TAGTGTAAGACCATGTCTGGGACATAGCATCGGCATCGATTTCGAGAGC * * * 95529088 CAGTGTAAGACCTTGTCTGGGACATTGCATCGGCAT 1 TAGTGTAAGACCATGTCTGGGACATAGCATCGGCAT 95529124 TATACCCTAT Statistics Matches: 71, Mismatches: 13, Indels: 3 0.82 0.15 0.03 Matches are distributed among these distances: 48 1 0.01 49 36 0.51 50 34 0.48 ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26 Consensus pattern (49 bp): TAGTGTAAGACCATGTCTGGGACATAGCATCGGCATCGATTTCGAGAGC Found at i:95529072 original size:123 final size:123 Alignment explanation
Indices: 95528851--95529091 Score: 385 Period size: 123 Copynumber: 2.0 Consensus size: 123 95528841 ATGGCTTTGT * 95528851 CACGTATAGAGGTGTCAGTGTAAGACCATATTTGGGACATGACATCGGCACGGATATGTGAGAGC 1 CACGTATAGAGGTGTCAGTGTAAGACCATATCTGGGACATGACATCGGCACGGATATGTGAGAGC * * * 95528916 TAGTGTAAGACCATGTTTAGGACATAGCGTCAGCCTCGATTTTGATAGCCAGTATCGG 66 TAGTGTAAGACCATGTCTAGGACATAGCATCAGCCTCGATTTCGATAGCCAGTATCGG * * * * 95528974 CACGTATAGAGGTGTTAGTGTAAGCCCATGTCTGGGACAT-AGCATCGGCATGGATATGTGAGAG 1 CACGTATAGAGGTGTCAGTGTAAGACCATATCTGGGACATGA-CATCGGCACGGATATGTGAGAG * 95529038 CTAGTGTAAGACCATGTCTAGGACATGGCATCAGCCTCGATTTCGATAGCCAGT 65 CTAGTGTAAGACCATGTCTAGGACATAGCATCAGCCTCGATTTCGATAGCCAGT 95529092 GTAAGACCTT Statistics Matches: 108, Mismatches: 9, Indels: 2 0.91 0.08 0.02 Matches are distributed among these distances: 122 1 0.01 123 107 0.99 ACGTcount: A:0.27, C:0.19, G:0.29, T:0.26 Consensus pattern (123 bp): CACGTATAGAGGTGTCAGTGTAAGACCATATCTGGGACATGACATCGGCACGGATATGTGAGAGC TAGTGTAAGACCATGTCTAGGACATAGCATCAGCCTCGATTTCGATAGCCAGTATCGG Found at i:95530127 original size:168 final size:168 Alignment explanation
Indices: 95529849--95530209 Score: 494 Period size: 168 Copynumber: 2.1 Consensus size: 168 95529839 CGGATAGACA * * * * 95529849 CACGGGCTTGTGTCTAGGTCGTGTGTAACACACGATCAGCCCCATAGGCGTATTGCTTGGTCGTG 1 CACGGGCGTGTGCCTAGGCCGTGTATAACACACGATCAGCCCCATAGGCGTATTGCTTGGTCGTG * 95529914 TGTCCCCTACACATAAAACTTGCAGGTCAGTATGCATGGTAGTAAACACACGGGCAGAGACACGG 66 TGTCCCCTACACATAAAACTTGCAAGTCAGTATGCATGGTAGTAAACACACGGGCAGAGACACGG * * 95529979 CCGTGTGTCTTAGCT-GTGTGGAGGACACAGCCTCTGGC 131 CCGTGTGTCTCAG-TAGTGTGGAGGACACAGCCTCTAGC * * * * * * 95530017 CACGGGCGTGTGCCTAGGCCGTGTATGACACACGGTCAGCCCTATGGGTGTGTTGCTTGG-CTGT 1 CACGGGCGTGTGCCTAGGCCGTGTATAACACACGATCAGCCCCATAGGCGTATTGCTTGGTC-GT * * * * * * 95530081 GTGTCCCCTGCACGTAAAATTTGCAAGTCAGTATGCGTGGTAGTAAACACATGGGCAGAGATACG 65 GTGTCCCCTACACATAAAACTTGCAAGTCAGTATGCATGGTAGTAAACACACGGGCAGAGACACG * 95530146 GCCGTGTGTCTCAGTAGTGTGGAGGACACGGCCTCTAGC 130 GCCGTGTGTCTCAGTAGTGTGGAGGACACAGCCTCTAGC 95530185 CACGGGCGTGTGCCTTA-GCCGTGTA 1 CACGGGCGTGTGCC-TAGGCCGTGTA 95530210 CCCCTTATCT Statistics Matches: 170, Mismatches: 20, Indels: 6 0.87 0.10 0.03 Matches are distributed among these distances: 167 2 0.01 168 166 0.98 169 2 0.01 ACGTcount: A:0.20, C:0.24, G:0.31, T:0.24 Consensus pattern (168 bp): CACGGGCGTGTGCCTAGGCCGTGTATAACACACGATCAGCCCCATAGGCGTATTGCTTGGTCGTG TGTCCCCTACACATAAAACTTGCAAGTCAGTATGCATGGTAGTAAACACACGGGCAGAGACACGG CCGTGTGTCTCAGTAGTGTGGAGGACACAGCCTCTAGC Found at i:95534863 original size:24 final size:26 Alignment explanation
Indices: 95534836--95534893 Score: 66 Period size: 24 Copynumber: 2.3 Consensus size: 26 95534826 TCATAACTTC 95534836 AATTAAATTATTATT-TTTATAATT- 1 AATTAAATTATTATTATTTATAATTG * * * 95534860 AATTAGATTTTTATTATTTTTAATTG 1 AATTAAATTATTATTATTTATAATTG 95534886 AATATAAA 1 AAT-TAAA 95534894 AATAAAAAAA Statistics Matches: 27, Mismatches: 4, Indels: 3 0.79 0.12 0.09 Matches are distributed among these distances: 24 13 0.48 25 8 0.30 26 3 0.11 27 3 0.11 ACGTcount: A:0.41, C:0.00, G:0.03, T:0.55 Consensus pattern (26 bp): AATTAAATTATTATTATTTATAATTG Found at i:95540703 original size:15 final size:14 Alignment explanation
Indices: 95540664--95540705 Score: 57 Period size: 15 Copynumber: 2.9 Consensus size: 14 95540654 GGTAAACTAT 95540664 AAAAAAAAAAGAAA 1 AAAAAAAAAAGAAA 95540678 AAATAAAAAAAGAAA 1 AAA-AAAAAAAGAAA * 95540693 AGAAAAGAAAAGA 1 A-AAAAAAAAAGA 95540706 TTTCTCTGTT Statistics Matches: 25, Mismatches: 1, Indels: 3 0.86 0.03 0.10 Matches are distributed among these distances: 14 3 0.12 15 20 0.80 16 2 0.08 ACGTcount: A:0.86, C:0.00, G:0.12, T:0.02 Consensus pattern (14 bp): AAAAAAAAAAGAAA Found at i:95544343 original size:21 final size:21 Alignment explanation
Indices: 95544318--95544362 Score: 63 Period size: 21 Copynumber: 2.1 Consensus size: 21 95544308 TGCTCACCTC ** 95544318 TGCCTCCCTCGCTGCTGCTGT 1 TGCCTCCCTAACTGCTGCTGT * 95544339 TGCCTCCCTAACTGCTGCTTT 1 TGCCTCCCTAACTGCTGCTGT 95544360 TGC 1 TGC 95544363 TCTAAGTTGT Statistics Matches: 21, Mismatches: 3, Indels: 0 0.88 0.12 0.00 Matches are distributed among these distances: 21 21 1.00 ACGTcount: A:0.04, C:0.40, G:0.20, T:0.36 Consensus pattern (21 bp): TGCCTCCCTAACTGCTGCTGT Found at i:95544795 original size:13 final size:14 Alignment explanation
Indices: 95544769--95544797 Score: 51 Period size: 13 Copynumber: 2.1 Consensus size: 14 95544759 ACTAACGACG 95544769 AATTAAATCATTAT 1 AATTAAATCATTAT 95544783 AATTAAA-CATTAT 1 AATTAAATCATTAT 95544796 AA 1 AA 95544798 ATATTTATAA Statistics Matches: 15, Mismatches: 0, Indels: 1 0.94 0.00 0.06 Matches are distributed among these distances: 13 8 0.53 14 7 0.47 ACGTcount: A:0.55, C:0.07, G:0.00, T:0.38 Consensus pattern (14 bp): AATTAAATCATTAT Found at i:95549869 original size:9 final size:9 Alignment explanation
Indices: 95549855--95549965 Score: 52 Period size: 9 Copynumber: 12.3 Consensus size: 9 95549845 TAACTATAAT 95549855 TAAGTTATG 1 TAAGTTATG 95549864 TAAGTTATG 1 TAAGTTATG * * * 95549873 ATATGATATA 1 -TAAGTTATG * 95549883 T-ATTTATG 1 TAAGTTATG 95549891 T-A-TTATG 1 TAAGTTATG 95549898 TAAGTTATG 1 TAAGTTATG * * 95549907 TAAATAATG 1 TAAGTTATG * 95549916 TAAGATATGATA 1 TAAG-T-T-ATG * 95549928 TATATTTATG 1 TA-AGTTATG * 95549938 T-A-TAATG 1 TAAGTTATG 95549945 TAAGTTATG 1 TAAGTTATG * 95549954 TAAATTATG 1 TAAGTTATG 95549963 TAA 1 TAA 95549966 AATATGATAT Statistics Matches: 76, Mismatches: 17, Indels: 18 0.68 0.15 0.16 Matches are distributed among these distances: 7 11 0.14 8 8 0.11 9 40 0.53 10 10 0.13 11 1 0.01 12 5 0.07 13 1 0.01 ACGTcount: A:0.40, C:0.00, G:0.15, T:0.45 Consensus pattern (9 bp): TAAGTTATG Found at i:95549904 original size:43 final size:43 Alignment explanation
Indices: 95549849--95549985 Score: 159 Period size: 47 Copynumber: 3.0 Consensus size: 43 95549839 TATTTATAAC * 95549849 TATAAT-TAAGTTATGTAAGTTATGATATGATATATATTTATG 1 TATAATGTAAGTTATGTAAATTATGATATGATATATATTTATG * * 95549891 TATTATGTAAGTTATGTAAATAATGTAAGATATGATATATATTTATG 1 TATAATGTAAGTTATGT--A-AAT-TATGATATGATATATATTTATG * 95549938 TATAATGTAAGTTATGTAAATTATGTAAAATATGATATATATCTATG 1 TATAATGTAAGTTATGTAAATTATG----ATATGATATATATTTATG 95549985 T 1 T 95549986 TGATGGGATT Statistics Matches: 80, Mismatches: 6, Indels: 13 0.81 0.06 0.13 Matches are distributed among these distances: 42 5 0.06 43 13 0.16 44 3 0.04 45 2 0.03 46 2 0.03 47 55 0.69 ACGTcount: A:0.40, C:0.01, G:0.14, T:0.45 Consensus pattern (43 bp): TATAATGTAAGTTATGTAAATTATGATATGATATATATTTATG Found at i:95549930 original size:47 final size:47 Alignment explanation
Indices: 95549872--95549985 Score: 192 Period size: 47 Copynumber: 2.4 Consensus size: 47 95549862 TGTAAGTTAT * 95549872 GATATGATATATATTTATGTATTATGTAAGTTATGTAAATAATGTAA 1 GATATGATATATATTTATGTATAATGTAAGTTATGTAAATAATGTAA * 95549919 GATATGATATATATTTATGTATAATGTAAGTTATGTAAATTATGTAA 1 GATATGATATATATTTATGTATAATGTAAGTTATGTAAATAATGTAA * * 95549966 AATATGATATATATCTATGT 1 GATATGATATATATTTATGT 95549986 TGATGGGATT Statistics Matches: 63, Mismatches: 4, Indels: 0 0.94 0.06 0.00 Matches are distributed among these distances: 47 63 1.00 ACGTcount: A:0.40, C:0.01, G:0.14, T:0.45 Consensus pattern (47 bp): GATATGATATATATTTATGTATAATGTAAGTTATGTAAATAATGTAA Found at i:95550239 original size:28 final size:29 Alignment explanation
Indices: 95550181--95550246 Score: 107 Period size: 28 Copynumber: 2.3 Consensus size: 29 95550171 TCTTGAGATT * 95550181 ATGGAAAATCACATTGGAAAAAAAATTAC 1 ATGGAAAATCACATTGGAAAAAAAATCAC 95550210 ATGGAAAATCACA-TGGAAAAAAAATCAC 1 ATGGAAAATCACATTGGAAAAAAAATCAC * 95550238 ATGAAAAAT 1 ATGGAAAAT 95550247 AATCTAAGCA Statistics Matches: 35, Mismatches: 2, Indels: 1 0.92 0.05 0.03 Matches are distributed among these distances: 28 22 0.63 29 13 0.37 ACGTcount: A:0.58, C:0.11, G:0.14, T:0.18 Consensus pattern (29 bp): ATGGAAAATCACATTGGAAAAAAAATCAC Found at i:95550250 original size:15 final size:16 Alignment explanation
Indices: 95550185--95550250 Score: 70 Period size: 16 Copynumber: 4.4 Consensus size: 16 95550175 GAGATTATGG 95550185 AAAATCACATTGGAAAA 1 AAAATCACA-TGGAAAA * 95550202 AAAATTACATGG---- 1 AAAATCACATGGAAAA 95550214 AAAATCACATGGAAAA 1 AAAATCACATGGAAAA 95550230 AAAATCACAT-GAAAA 1 AAAATCACATGGAAAA * 95550245 ATAATC 1 AAAATC 95550251 TAAGCATAAA Statistics Matches: 42, Mismatches: 3, Indels: 10 0.76 0.05 0.18 Matches are distributed among these distances: 12 11 0.26 15 10 0.24 16 13 0.31 17 8 0.19 ACGTcount: A:0.59, C:0.12, G:0.11, T:0.18 Consensus pattern (16 bp): AAAATCACATGGAAAA Found at i:95553172 original size:39 final size:40 Alignment explanation
Indices: 95553129--95553204 Score: 109 Period size: 40 Copynumber: 1.9 Consensus size: 40 95553119 AACATTTAGT * * 95553129 GGCG-TTTTACAAAAGCGTCGCTAAATCTCAATTTTTTGC 1 GGCGTTTTTACAAAAGCGCCACTAAATCTCAATTTTTTGC * * 95553168 GGCGTTTTTACAAAAGCGCCACTAATTCTCTATTTTT 1 GGCGTTTTTACAAAAGCGCCACTAAATCTCAATTTTT 95553205 AGCTAAAATG Statistics Matches: 32, Mismatches: 4, Indels: 1 0.86 0.11 0.03 Matches are distributed among these distances: 39 4 0.12 40 28 0.88 ACGTcount: A:0.25, C:0.21, G:0.16, T:0.38 Consensus pattern (40 bp): GGCGTTTTTACAAAAGCGCCACTAAATCTCAATTTTTTGC Found at i:95554547 original size:7 final size:7 Alignment explanation
Indices: 95554535--95554612 Score: 57 Period size: 7 Copynumber: 11.0 Consensus size: 7 95554525 TTTTTTGGGG 95554535 GGGTTTA 1 GGGTTTA 95554542 GGGTTTTA 1 GGG-TTTA * 95554550 GAGTTTA 1 GGGTTTA * * 95554557 TGGATTA 1 GGGTTTA * 95554564 GTGTTTA 1 GGGTTTA * 95554571 TGGTTTA 1 GGGTTTA * * 95554578 TGTTTTA 1 GGGTTTA *** 95554585 AAATTTA 1 GGGTTTA 95554592 GGGTTTA 1 GGGTTTA 95554599 GGGTTTA 1 GGGTTTA 95554606 GGGTTTA 1 GGGTTTA 95554613 ATGTTAAGAT Statistics Matches: 54, Mismatches: 16, Indels: 2 0.75 0.22 0.03 Matches are distributed among these distances: 7 48 0.89 8 6 0.11 ACGTcount: A:0.21, C:0.00, G:0.31, T:0.49 Consensus pattern (7 bp): GGGTTTA Found at i:95554966 original size:40 final size:41 Alignment explanation
Indices: 95554921--95555663 Score: 819 Period size: 41 Copynumber: 18.2 Consensus size: 41 95554911 AACTTTTTGC * 95554921 GGCGTTTGGACCAAAAACGCCGCTATTGATGAG-TTTTAGT 1 GGCGTTTGGACCAAAAACGCCGCTATTGATCAGTTTTTAGT * 95554961 GGCGTTTGGACCAAAAACGCCGCTATTGATCATTTTTTAGT 1 GGCGTTTGGACCAAAAACGCCGCTATTGATCAGTTTTTAGT * * * 95555002 GGCGTTTGAGA-TAAAAATGCTGCTATTGATCAGTTTTTAGT 1 GGCGTTTG-GACCAAAAACGCCGCTATTGATCAGTTTTTAGT ** * 95555043 GGCGTTTGGGATAAAAAAACGCCGCTATTGATAAGTTTTTAGT 1 GGCGTTT-GGA-CCAAAAACGCCGCTATTGATCAGTTTTTAGT * ** 95555086 GGTGTTT-GACCAAAAACGCCGCTATACA-CAAGTTTTTAGT 1 GGCGTTTGGACCAAAAACGCCGCTATTGATC-AGTTTTTAGT * ** * * 95555126 GGCATTTGGAAGAAAAATGCCGCTATTAATCAGTTTTTAGT 1 GGCGTTTGGACCAAAAACGCCGCTATTGATCAGTTTTTAGT * * * * 95555167 GGCGCTTGGGCAAAAAACGCCGCTATTGATCATTTTTTAGT 1 GGCGTTTGGACCAAAAACGCCGCTATTGATCAGTTTTTAGT * * * 95555208 GGCGTTTGAGA-TAAAAATGCTGCTATTGATCAGTTTTTAGT 1 GGCGTTTG-GACCAAAAACGCCGCTATTGATCAGTTTTTAGT ** * 95555249 GGCGTTTGGGATAAAAAAAACGCCGCTATTGATAAGTTTTTAGT 1 GGCGTTT-GG--ACCAAAAACGCCGCTATTGATCAGTTTTTAGT * ** 95555293 GGTGTTT-GACCAAAAACGCCGCTATACA-CAAGTTTTTAGT 1 GGCGTTTGGACCAAAAACGCCGCTATTGATC-AGTTTTTAGT * ** * * 95555333 GGCATTTGGAAGAAAAATGCCGCTATTAATCAGTTTTTAGT 1 GGCGTTTGGACCAAAAACGCCGCTATTGATCAGTTTTTAGT * * * * * 95555374 GGCGCTTGGGCAAAAAACGCCGCTGTTGATCAGTTTTTCGT 1 GGCGTTTGGACCAAAAACGCCGCTATTGATCAGTTTTTAGT * * 95555415 GGCGTTTGG-CCAAAAACACCGCTATTAATCAGTTTTTAGT 1 GGCGTTTGGACCAAAAACGCCGCTATTGATCAGTTTTTAGT * 95555455 GGCGTTTGG-CCAAAAACGCCGCTATTGATAAGTTTTTAGT 1 GGCGTTTGGACCAAAAACGCCGCTATTGATCAGTTTTTAGT * * * 95555495 GGCGTTTGGGA-TAAAAACGCTGCTATTGATCAGTTTTTAGG 1 GGCGTTT-GGACCAAAAACGCCGCTATTGATCAGTTTTTAGT * * * * * 95555536 GGCGCTTGG-CCAAAAACACCGCTATTGTTCAGTTCTTAAT 1 GGCGTTTGGACCAAAAACGCCGCTATTGATCAGTTTTTAGT * 95555576 GGCGTTTGGGA-TAAAAACGCCGCTATTGATCAGTTTTTAGT 1 GGCGTTT-GGACCAAAAACGCCGCTATTGATCAGTTTTTAGT * * 95555617 GGCGTTTGG-CCAAAAACGCCGCTACTGTTCAGTTTTTAGT 1 GGCGTTTGGACCAAAAACGCCGCTATTGATCAGTTTTTAGT 95555657 GGCGTTT 1 GGCGTTT 95555664 TTGCTAAAAA Statistics Matches: 588, Mismatches: 93, Indels: 44 0.81 0.13 0.06 Matches are distributed among these distances: 40 229 0.39 41 286 0.49 42 8 0.01 43 33 0.06 44 32 0.05 ACGTcount: A:0.26, C:0.16, G:0.24, T:0.33 Consensus pattern (41 bp): GGCGTTTGGACCAAAAACGCCGCTATTGATCAGTTTTTAGT Found at i:95555027 original size:81 final size:82 Alignment explanation
Indices: 95554933--95555663 Score: 838 Period size: 81 Copynumber: 8.9 Consensus size: 82 95554923 CGTTTGGACC * * 95554933 AAAAACGCCGCTATTGATGAG-TTTTAGTGGCGTTTGGACCAAAAACGCCGCTATTGATCATTTT 1 AAAAACGCCGCTATTGATCAGTTTTTAGTGGCGTTTGGACCAAAAACGCCGCTATTGATCAGTTT * 95554997 TTAGTGGCGTTTGAGAT 66 TTAGTGGCGTTTGGGAT * * ** * 95555014 AAAAATGCTGCTATTGATCAGTTTTTAGTGGCGTTTGGGATAAAAAAACGCCGCTATTGATAAGT 1 AAAAACGCCGCTATTGATCAGTTTTTAGTGGCGTTT-GGA-CCAAAAACGCCGCTATTGATCAGT * * 95555079 TTTTAGTGGTGTTT--GACC 64 TTTTAGTGGCGTTTGGGA-T ** * ** * * 95555097 AAAAACGCCGCTATACA-CAAGTTTTTAGTGGCATTTGGAAGAAAAATGCCGCTATTAATCAGTT 1 AAAAACGCCGCTATTGATC-AGTTTTTAGTGGCGTTTGGACCAAAAACGCCGCTATTGATCAGTT * 95555161 TTTAGTGGCGCTTGGGCA- 65 TTTAGTGGCGTTTGGG-AT * * * * 95555179 AAAAACGCCGCTATTGATCATTTTTTAGTGGCGTTTGAGA-TAAAAATGCTGCTATTGATCAGTT 1 AAAAACGCCGCTATTGATCAGTTTTTAGTGGCGTTTG-GACCAAAAACGCCGCTATTGATCAGTT 95555243 TTTAGTGGCGTTTGGGAT 65 TTTAGTGGCGTTTGGGAT * * ** 95555261 AAAAAAAACGCCGCTATTGATAAGTTTTTAGTGGTGTTT-GACCAAAAACGCCGCTATACA-CAA 1 ---AAAAACGCCGCTATTGATCAGTTTTTAGTGGCGTTTGGACCAAAAACGCCGCTATTGATC-A * * * 95555324 GTTTTTAGTGGCATTTGGAAG 62 GTTTTTAGTGGCGTTTGGGAT * * * * * * 95555345 AAAAATGCCGCTATTAATCAGTTTTTAGTGGCGCTTGGGCAAAAAACGCCGCTGTTGATCAGTTT 1 AAAAACGCCGCTATTGATCAGTTTTTAGTGGCGTTTGGACCAAAAACGCCGCTATTGATCAGTTT * ** 95555410 TTCGTGGCGTTT-GGCC 66 TTAGTGGCGTTTGGGAT * * * 95555426 AAAAACACCGCTATTAATCAGTTTTTAGTGGCGTTTGG-CCAAAAACGCCGCTATTGATAAGTTT 1 AAAAACGCCGCTATTGATCAGTTTTTAGTGGCGTTTGGACCAAAAACGCCGCTATTGATCAGTTT 95555490 TTAGTGGCGTTTGGGAT 66 TTAGTGGCGTTTGGGAT * * * * * * 95555507 AAAAACGCTGCTATTGATCAGTTTTTAGGGGCGCTTGG-CCAAAAACACCGCTATTGTTCAGTTC 1 AAAAACGCCGCTATTGATCAGTTTTTAGTGGCGTTTGGACCAAAAACGCCGCTATTGATCAGTTT * 95555571 TTAATGGCGTTTGGGAT 66 TTAGTGGCGTTTGGGAT * * 95555588 AAAAACGCCGCTATTGATCAGTTTTTAGTGGCGTTTGG-CCAAAAACGCCGCTACTGTTCAGTTT 1 AAAAACGCCGCTATTGATCAGTTTTTAGTGGCGTTTGGACCAAAAACGCCGCTATTGATCAGTTT 95555652 TTAGTGGCGTTT 66 TTAGTGGCGTTT 95555664 TTGCTAAAAA Statistics Matches: 551, Mismatches: 80, Indels: 38 0.82 0.12 0.06 Matches are distributed among these distances: 80 34 0.06 81 260 0.47 82 118 0.21 83 40 0.07 84 66 0.12 85 33 0.06 ACGTcount: A:0.27, C:0.16, G:0.24, T:0.33 Consensus pattern (82 bp): AAAAACGCCGCTATTGATCAGTTTTTAGTGGCGTTTGGACCAAAAACGCCGCTATTGATCAGTTT TTAGTGGCGTTTGGGAT Found at i:95561063 original size:59 final size:54 Alignment explanation
Indices: 95560990--95561124 Score: 157 Period size: 54 Copynumber: 2.4 Consensus size: 54 95560980 TAGGGTCTGA * * 95560990 ATTTAGCCTGGACTGGTAATTCAGATCCAAGCT-CATTA-GAGTAATTATCGTTGCAGGGG 1 ATTTAGCCTGGACTGGTAATCCAGA--CAA--TACATTATGAGT--TTAT-ATTGCAGGGG * * 95561049 ATTTAGCCTGGACTGGTAATCCCGACAATACTTTATGAGTTTATATTGCAGGGG 1 ATTTAGCCTGGACTGGTAATCCAGACAATACATTATGAGTTTATATTGCAGGGG 95561103 ATTTAGCCTGGACTGGTAATCC 1 ATTTAGCCTGGACTGGTAATCC 95561125 CGCTGCAAGG Statistics Matches: 70, Mismatches: 4, Indels: 9 0.84 0.05 0.11 Matches are distributed among these distances: 54 31 0.44 55 5 0.07 56 4 0.06 57 7 0.10 59 23 0.33 ACGTcount: A:0.26, C:0.18, G:0.24, T:0.32 Consensus pattern (54 bp): ATTTAGCCTGGACTGGTAATCCAGACAATACATTATGAGTTTATATTGCAGGGG Found at i:95570130 original size:19 final size:19 Alignment explanation
Indices: 95570106--95570143 Score: 76 Period size: 19 Copynumber: 2.0 Consensus size: 19 95570096 GTTTTCCGGA 95570106 AAATGATTTACTTTTCTGG 1 AAATGATTTACTTTTCTGG 95570125 AAATGATTTACTTTTCTGG 1 AAATGATTTACTTTTCTGG 95570144 TGTTTGGATG Statistics Matches: 19, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 19 19 1.00 ACGTcount: A:0.26, C:0.11, G:0.16, T:0.47 Consensus pattern (19 bp): AAATGATTTACTTTTCTGG Found at i:95576632 original size:37 final size:36 Alignment explanation
Indices: 95576579--95576686 Score: 100 Period size: 37 Copynumber: 3.0 Consensus size: 36 95576569 TATTCCAAAA * 95576579 TAATATTATTTTAATAGTTTAATATTAAATTTAATT 1 TAATATTATCTTAATAGTTTAATATTAAATTTAATT * 95576615 TAATACTTATCTTAATAGTATT-TTATT-AATTTAATAT 1 TAATA-TTATCTTAATAGT-TTAATATTAAATTTAAT-T * 95576652 TAAAGTTATTATCTTAATA--TTAA-ATTTAATTTAAT 1 T-AA--TATTATCTTAATAGTTTAATATTAAATTTAAT 95576687 GTTTATCTTG Statistics Matches: 61, Mismatches: 3, Indels: 15 0.77 0.04 0.19 Matches are distributed among these distances: 36 18 0.30 37 26 0.43 38 4 0.07 39 11 0.18 40 2 0.03 ACGTcount: A:0.41, C:0.03, G:0.03, T:0.54 Consensus pattern (36 bp): TAATATTATCTTAATAGTTTAATATTAAATTTAATT Found at i:95576662 original size:20 final size:19 Alignment explanation
Indices: 95576637--95576686 Score: 61 Period size: 20 Copynumber: 2.7 Consensus size: 19 95576627 TAATAGTATT 95576637 TTATTAATTTAATATTAAA 1 TTATTAATTTAATATTAAA 95576656 GTTATT-ATCTTAATATTAAA 1 -TTATTAAT-TTAATATTAAA 95576676 -T-TTAATTTAAT 1 TTATTAATTTAAT 95576687 GTTTATCTTG Statistics Matches: 28, Mismatches: 0, Indels: 7 0.80 0.00 0.20 Matches are distributed among these distances: 17 7 0.25 18 3 0.11 19 2 0.07 20 16 0.57 ACGTcount: A:0.42, C:0.02, G:0.02, T:0.54 Consensus pattern (19 bp): TTATTAATTTAATATTAAA Found at i:95583806 original size:27 final size:28 Alignment explanation
Indices: 95583703--95583815 Score: 88 Period size: 28 Copynumber: 3.9 Consensus size: 28 95583693 CTATTCAGAA * * 95583703 ATCAGTGTTAA-CTGGGCCTTAGCCCAT 1 ATCAGTATTAATCTGGGCCATAGCCCAT * * 95583730 ATCAGTATTAATCTGGGCCATAACCCCT 1 ATCAGTATTAATCTGGGCCATAGCCCAT ** 95583758 -TACAGTAACAGAGTATACTGGGCC-TAGCCCAT 1 AT-CAGT-A-TTA--AT-CTGGGCCATAGCCCAT * 95583790 ATCAGTATTAATCTGGGCCGTAGCCC 1 ATCAGTATTAATCTGGGCCATAGCCC 95583816 TATTACAAGT Statistics Matches: 67, Mismatches: 10, Indels: 17 0.71 0.11 0.18 Matches are distributed among these distances: 27 18 0.27 28 25 0.37 29 1 0.01 30 2 0.03 31 1 0.01 32 12 0.18 33 8 0.12 ACGTcount: A:0.27, C:0.27, G:0.20, T:0.27 Consensus pattern (28 bp): ATCAGTATTAATCTGGGCCATAGCCCAT Found at i:95583840 original size:60 final size:59 Alignment explanation
Indices: 95583713--95583853 Score: 178 Period size: 60 Copynumber: 2.3 Consensus size: 59 95583703 ATCAGTGTTA * 95583713 ACTGGGCCTTAGCCCATATCAGTATTAATCTGGGCCATAACCCCTTACAGTAACAGAGTAT 1 ACTGGGCC-TAGCCCATATCAGTATTAATCTGGGCCATAACCCATTACAGT-ACAGAGTAT * * 95583774 ACTGGGCCTAGCCCATATCAGTATTAATCTGGGCCGTAGCCCTATTACAAGT-C-GAGATAT 1 ACTGGGCCTAGCCCATATCAGTATTAATCTGGGCCATAACCC-ATTAC-AGTACAGAG-TAT * * 95583834 ATTGGGCCTTGCCCATATCA 1 ACTGGGCCTAGCCCATATCA 95583854 ACACAGTTGG Statistics Matches: 72, Mismatches: 5, Indels: 7 0.86 0.06 0.08 Matches are distributed among these distances: 59 3 0.04 60 54 0.75 61 12 0.17 62 3 0.04 ACGTcount: A:0.27, C:0.26, G:0.20, T:0.27 Consensus pattern (59 bp): ACTGGGCCTAGCCCATATCAGTATTAATCTGGGCCATAACCCATTACAGTACAGAGTAT Found at i:95588746 original size:5 final size:5 Alignment explanation
Indices: 95588732--95588798 Score: 52 Period size: 5 Copynumber: 13.6 Consensus size: 5 95588722 AAATAGAAAG * * 95588732 ATTTT ATTTT GTTTT ATTTTT ATTTT ATTATT -TATT A-TTT ATTATT 1 ATTTT ATTTT ATTTT A-TTTT ATTTT ATT-TT ATTTT ATTTT ATT-TT * 95588778 -TATT A-TTT ATTTT ATTTT ATT 1 ATTTT ATTTT ATTTT ATTTT ATT 95588799 AATTTAGGTT Statistics Matches: 49, Mismatches: 6, Indels: 14 0.71 0.09 0.20 Matches are distributed among these distances: 4 10 0.20 5 30 0.61 6 9 0.18 ACGTcount: A:0.22, C:0.00, G:0.01, T:0.76 Consensus pattern (5 bp): ATTTT Found at i:95588758 original size:21 final size:20 Alignment explanation
Indices: 95588732--95588795 Score: 65 Period size: 21 Copynumber: 3.0 Consensus size: 20 95588722 AAATAGAAAG 95588732 ATTTTATTTTGTTTTATTTTT 1 ATTTTATTTT-TTTTATTTTT * 95588753 ATTTTATTATTTATTATTTATT 1 ATTTTATT-TTTTTTATTT-TT * 95588775 ATTTATTATTTATTTTATTTT 1 A-TT-TTATTTTTTTTATTTT 95588796 ATTAATTTAG Statistics Matches: 36, Mismatches: 3, Indels: 7 0.78 0.07 0.15 Matches are distributed among these distances: 21 15 0.42 22 6 0.17 23 10 0.28 24 5 0.14 ACGTcount: A:0.22, C:0.00, G:0.02, T:0.77 Consensus pattern (20 bp): ATTTTATTTTTTTTATTTTT Found at i:95588764 original size:14 final size:15 Alignment explanation
Indices: 95588745--95588804 Score: 70 Period size: 14 Copynumber: 4.0 Consensus size: 15 95588735 TTATTTTGTT 95588745 TTATTT-TTATTTTA 1 TTATTTATTATTTTA 95588759 TTATTTATTA-TTTA 1 TTATTTATTATTTTA * 95588773 TTATTTATTATTTATT 1 TTATTTATTATTT-TA * 95588789 TTATTTTATTAATTTA 1 TTA-TTTATTATTTTA 95588805 GGTTAGGCTA Statistics Matches: 39, Mismatches: 3, Indels: 6 0.81 0.06 0.12 Matches are distributed among these distances: 14 20 0.51 15 5 0.13 16 5 0.13 17 9 0.23 ACGTcount: A:0.27, C:0.00, G:0.00, T:0.73 Consensus pattern (15 bp): TTATTTATTATTTTA Found at i:95588767 original size:7 final size:7 Alignment explanation
Indices: 95588745--95588788 Score: 72 Period size: 7 Copynumber: 6.3 Consensus size: 7 95588735 TTATTTTGTT 95588745 TTATTT- 1 TTATTTA 95588751 TTATTTTA 1 TTA-TTTA 95588759 TTATTTA 1 TTATTTA 95588766 TTATTTA 1 TTATTTA 95588773 TTATTTA 1 TTATTTA 95588780 TTATTTA 1 TTATTTA 95588787 TT 1 TT 95588789 TTATTTTATT Statistics Matches: 36, Mismatches: 0, Indels: 3 0.92 0.00 0.08 Matches are distributed among these distances: 6 3 0.08 7 30 0.83 8 3 0.08 ACGTcount: A:0.25, C:0.00, G:0.00, T:0.75 Consensus pattern (7 bp): TTATTTA Found at i:95588797 original size:21 final size:21 Alignment explanation
Indices: 95588743--95588798 Score: 69 Period size: 21 Copynumber: 2.6 Consensus size: 21 95588733 TTTTATTTTG 95588743 TTTTATTTTTATTTTATTATTTA 1 TTTTA-TTTTA-TTTATTATTTA * 95588766 TTATT-TATTATTTATTATTTA 1 TT-TTATTTTATTTATTATTTA 95588787 TTTTATTTTATT 1 TTTTATTTTATT 95588799 AATTTAGGTT Statistics Matches: 29, Mismatches: 2, Indels: 6 0.78 0.05 0.16 Matches are distributed among these distances: 20 2 0.07 21 19 0.66 22 4 0.14 23 2 0.07 24 2 0.07 ACGTcount: A:0.23, C:0.00, G:0.00, T:0.77 Consensus pattern (21 bp): TTTTATTTTATTTATTATTTA Found at i:95593145 original size:27 final size:27 Alignment explanation
Indices: 95593104--95593157 Score: 74 Period size: 27 Copynumber: 2.0 Consensus size: 27 95593094 TCCATTTACA * 95593104 ACTCAACCCTAACTATTAAAACCAAACC 1 ACTCAACCCTAACTACTAAAA-CAAACC * 95593132 ACTCAGCCC-AACTACTAAAACAAACC 1 ACTCAACCCTAACTACTAAAACAAACC 95593158 TAATTAACAA Statistics Matches: 24, Mismatches: 2, Indels: 2 0.86 0.07 0.07 Matches are distributed among these distances: 26 6 0.25 27 10 0.42 28 8 0.33 ACGTcount: A:0.46, C:0.37, G:0.02, T:0.15 Consensus pattern (27 bp): ACTCAACCCTAACTACTAAAACAAACC Found at i:95623382 original size:20 final size:21 Alignment explanation
Indices: 95623357--95623397 Score: 57 Period size: 21 Copynumber: 2.0 Consensus size: 21 95623347 TTTTTTTTTT * 95623357 AATTTTTCT-ATAGTTTCTAA 1 AATTTTTATAATAGTTTCTAA * 95623377 AATTTTTATAATATTTTCTAA 1 AATTTTTATAATAGTTTCTAA 95623398 TTCTTCCATA Statistics Matches: 18, Mismatches: 2, Indels: 1 0.86 0.10 0.05 Matches are distributed among these distances: 20 8 0.44 21 10 0.56 ACGTcount: A:0.34, C:0.07, G:0.02, T:0.56 Consensus pattern (21 bp): AATTTTTATAATAGTTTCTAA Found at i:95628244 original size:16 final size:17 Alignment explanation
Indices: 95628220--95628262 Score: 54 Period size: 16 Copynumber: 2.6 Consensus size: 17 95628210 CCCAAATTTA 95628220 TTAAATAAAA-ATTATC 1 TTAAATAAAATATTATC * 95628236 TTAATTAAAATATTAT- 1 TTAAATAAAATATTATC * 95628252 TTCAATAAAAT 1 TTAAATAAAAT 95628263 GTTTAAATTT Statistics Matches: 23, Mismatches: 3, Indels: 2 0.82 0.11 0.07 Matches are distributed among these distances: 16 18 0.78 17 5 0.22 ACGTcount: A:0.53, C:0.05, G:0.00, T:0.42 Consensus pattern (17 bp): TTAAATAAAATATTATC Found at i:95628437 original size:32 final size:33 Alignment explanation
Indices: 95628401--95628462 Score: 81 Period size: 32 Copynumber: 1.9 Consensus size: 33 95628391 TCATAAACTT * * 95628401 ATAAATTGATTACTTGAA-TTTAATAACTCGTG 1 ATAAATTAATTAATTGAATTTTAATAACTCGTG * * 95628433 ATAAATTAATTAATTTAATTTTGATAACTC 1 ATAAATTAATTAATTGAATTTTAATAACTC 95628463 ATTGGTTAAC Statistics Matches: 25, Mismatches: 4, Indels: 1 0.83 0.13 0.03 Matches are distributed among these distances: 32 15 0.60 33 10 0.40 ACGTcount: A:0.40, C:0.08, G:0.08, T:0.44 Consensus pattern (33 bp): ATAAATTAATTAATTGAATTTTAATAACTCGTG Found at i:95632398 original size:23 final size:23 Alignment explanation
Indices: 95632372--95632462 Score: 101 Period size: 23 Copynumber: 4.0 Consensus size: 23 95632362 TACAAAACTT * 95632372 ACCACACAGACATTGCAGAATAC 1 ACCACAAAGACATTGCAGAATAC * * * * 95632395 ACCACAAAGGCATTGTAAAATAT 1 ACCACAAAGACATTGCAGAATAC * * 95632418 GCCACAAAGACATTGAAGAATAC 1 ACCACAAAGACATTGCAGAATAC * * 95632441 ACCACAAATACATTACAGAATA 1 ACCACAAAGACATTGCAGAATA 95632463 TGTCACAAAG Statistics Matches: 54, Mismatches: 14, Indels: 0 0.79 0.21 0.00 Matches are distributed among these distances: 23 54 1.00 ACGTcount: A:0.48, C:0.23, G:0.12, T:0.16 Consensus pattern (23 bp): ACCACAAAGACATTGCAGAATAC Found at i:95632429 original size:46 final size:46 Alignment explanation
Indices: 95632373--95632545 Score: 168 Period size: 46 Copynumber: 3.8 Consensus size: 46 95632363 ACAAAACTTA * * * * * 95632373 CCACACAGACATTGCAGAATACACCACAAAGGCATTGTAAAATATG 1 CCACAAAGACATTACAAAATACACCACAAAGGCATTATAGAATATG * ** * 95632419 CCACAAAGACATTGA-AGAATACACCACAAATACATTACAGAATATG 1 CCACAAAGACATT-ACAAAATACACCACAAAGGCATTATAGAATATG * * ** * 95632465 TCACAAAGGCATTACAAAATATGCCACAAAGGCATTATAGAATACG 1 CCACAAAGACATTACAAAATACACCACAAAGGCATTATAGAATATG * * ** 95632511 TCACAAAGGCATTACAAAATATGCCACAAAGGCAT 1 CCACAAAGACATTACAAAATACACCACAAAGGCAT 95632546 CGCAAGTAAC Statistics Matches: 109, Mismatches: 16, Indels: 4 0.84 0.12 0.03 Matches are distributed among these distances: 45 1 0.01 46 108 0.99 ACGTcount: A:0.46, C:0.22, G:0.14, T:0.18 Consensus pattern (46 bp): CCACAAAGACATTACAAAATACACCACAAAGGCATTATAGAATATG Found at i:95632461 original size:69 final size:69 Alignment explanation
Indices: 95632372--95632545 Score: 215 Period size: 69 Copynumber: 2.5 Consensus size: 69 95632362 TACAAAACTT * * ** ** 95632372 ACCACACAGACATTGCAGAATACACCACAAAGGCATTGTAAAATATGCCACAAAGACATTGA-AG 1 ACCACAAAGACATTACAGAATATGCCACAAAGGCATTACAAAATATGCCACAAAGACATT-ATAG 95632436 AATAC 65 AATAC * * * 95632441 ACCACAAATACATTACAGAATATGTCACAAAGGCATTACAAAATATGCCACAAAGGCATTATAGA 1 ACCACAAAGACATTACAGAATATGCCACAAAGGCATTACAAAATATGCCACAAAGACATTATAGA 95632506 ATAC 66 ATAC ** * * 95632510 GTCACAAAGGCATTACAAAATATGCCACAAAGGCAT 1 ACCACAAAGACATTACAGAATATGCCACAAAGGCAT 95632546 CGCAAGTAAC Statistics Matches: 89, Mismatches: 15, Indels: 2 0.84 0.14 0.02 Matches are distributed among these distances: 68 1 0.01 69 88 0.99 ACGTcount: A:0.47, C:0.22, G:0.14, T:0.18 Consensus pattern (69 bp): ACCACAAAGACATTACAGAATATGCCACAAAGGCATTACAAAATATGCCACAAAGACATTATAGA ATAC Found at i:95632469 original size:23 final size:23 Alignment explanation
Indices: 95632442--95632545 Score: 136 Period size: 23 Copynumber: 4.5 Consensus size: 23 95632432 GAAGAATACA ** * 95632442 CCACAAATACATTACAGAATATG 1 CCACAAAGGCATTACAAAATATG * 95632465 TCACAAAGGCATTACAAAATATG 1 CCACAAAGGCATTACAAAATATG * * * 95632488 CCACAAAGGCATTATAGAATACG 1 CCACAAAGGCATTACAAAATATG * 95632511 TCACAAAGGCATTACAAAATATG 1 CCACAAAGGCATTACAAAATATG 95632534 CCACAAAGGCAT 1 CCACAAAGGCAT 95632546 CGCAAGTAAC Statistics Matches: 68, Mismatches: 13, Indels: 0 0.84 0.16 0.00 Matches are distributed among these distances: 23 68 1.00 ACGTcount: A:0.46, C:0.21, G:0.13, T:0.19 Consensus pattern (23 bp): CCACAAAGGCATTACAAAATATG Found at i:95634210 original size:28 final size:28 Alignment explanation
Indices: 95634166--95634220 Score: 69 Period size: 28 Copynumber: 2.0 Consensus size: 28 95634156 AAAGGGAAGG * 95634166 AAAAAGGAATGGAAAAA-AAGAAGAAAAA 1 AAAAAGGAATAGAAAAAGAA-AAGAAAAA 95634194 AAAAAGGAA-AGATAAAAGAAAAGAAAA 1 AAAAAGGAATAGA-AAAAGAAAAGAAAA 95634221 GGAAGAGAAA Statistics Matches: 24, Mismatches: 1, Indels: 4 0.83 0.03 0.14 Matches are distributed among these distances: 27 2 0.08 28 20 0.83 29 2 0.08 ACGTcount: A:0.76, C:0.00, G:0.20, T:0.04 Consensus pattern (28 bp): AAAAAGGAATAGAAAAAGAAAAGAAAAA Found at i:95639957 original size:17 final size:17 Alignment explanation
Indices: 95639935--95639967 Score: 57 Period size: 17 Copynumber: 1.9 Consensus size: 17 95639925 AATTACGAGC * 95639935 AGAATTTCTGAACGGGT 1 AGAATTTCTAAACGGGT 95639952 AGAATTTCTAAACGGG 1 AGAATTTCTAAACGGG 95639968 ATTATGACGA Statistics Matches: 15, Mismatches: 1, Indels: 0 0.94 0.06 0.00 Matches are distributed among these distances: 17 15 1.00 ACGTcount: A:0.33, C:0.12, G:0.27, T:0.27 Consensus pattern (17 bp): AGAATTTCTAAACGGGT Found at i:95643823 original size:7 final size:7 Alignment explanation
Indices: 95643807--95643835 Score: 51 Period size: 7 Copynumber: 4.3 Consensus size: 7 95643797 GAATCGAAAC 95643807 AAAA-AA 1 AAAACAA 95643813 AAAACAA 1 AAAACAA 95643820 AAAACAA 1 AAAACAA 95643827 AAAACAA 1 AAAACAA 95643834 AA 1 AA 95643836 TCAATTGGTG Statistics Matches: 22, Mismatches: 0, Indels: 1 0.96 0.00 0.04 Matches are distributed among these distances: 6 4 0.18 7 18 0.82 ACGTcount: A:0.90, C:0.10, G:0.00, T:0.00 Consensus pattern (7 bp): AAAACAA Found at i:95648371 original size:20 final size:20 Alignment explanation
Indices: 95648346--95648385 Score: 62 Period size: 20 Copynumber: 2.0 Consensus size: 20 95648336 AATATTTTCC * 95648346 AGTAAATTATTTTACAGAAA 1 AGTAAAATATTTTACAGAAA * 95648366 AGTAAAATATTTTCCAGAAA 1 AGTAAAATATTTTACAGAAA 95648386 TCATTTTACG Statistics Matches: 18, Mismatches: 2, Indels: 0 0.90 0.10 0.00 Matches are distributed among these distances: 20 18 1.00 ACGTcount: A:0.50, C:0.07, G:0.10, T:0.33 Consensus pattern (20 bp): AGTAAAATATTTTACAGAAA Found at i:95648400 original size:34 final size:35 Alignment explanation
Indices: 95648334--95648400 Score: 109 Period size: 34 Copynumber: 1.9 Consensus size: 35 95648324 CAAACACCAG * 95648334 AAAATATTTTCCAGTAAATTATTTTACAGAAAAGT 1 AAAATATTTTCCAGTAAATCATTTTACAGAAAAGT * 95648369 AAAATATTTTCCAG-AAATCATTTTACGGAAAA 1 AAAATATTTTCCAGTAAATCATTTTACAGAAAA 95648401 CATTTTACTG Statistics Matches: 30, Mismatches: 2, Indels: 1 0.91 0.06 0.03 Matches are distributed among these distances: 34 16 0.53 35 14 0.47 ACGTcount: A:0.46, C:0.10, G:0.09, T:0.34 Consensus pattern (35 bp): AAAATATTTTCCAGTAAATCATTTTACAGAAAAGT Found at i:95658647 original size:18 final size:18 Alignment explanation
Indices: 95658624--95658660 Score: 74 Period size: 18 Copynumber: 2.1 Consensus size: 18 95658614 CTAGAGAGTT 95658624 AAACTATGATCAAACTTA 1 AAACTATGATCAAACTTA 95658642 AAACTATGATCAAACTTA 1 AAACTATGATCAAACTTA 95658660 A 1 A 95658661 TCTATTTAAT Statistics Matches: 19, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 18 19 1.00 ACGTcount: A:0.51, C:0.16, G:0.05, T:0.27 Consensus pattern (18 bp): AAACTATGATCAAACTTA Found at i:95658778 original size:29 final size:32 Alignment explanation
Indices: 95658745--95658812 Score: 81 Period size: 29 Copynumber: 2.2 Consensus size: 32 95658735 TTAATAAAAT * 95658745 ATTTATCTA-TAAGATAA-ACATTAA-ATTAA 1 ATTTATATAGTAAGATAACACATTAATATTAA * 95658774 ATTTA-ATAGTAAGATAATCACTTTAATATTAA 1 ATTTATATAGTAAGATAA-CACATTAATATTAA 95658806 ATTTATA 1 ATTTATA 95658813 AAATACTATT Statistics Matches: 32, Mismatches: 2, Indels: 6 0.80 0.05 0.15 Matches are distributed among these distances: 28 2 0.06 29 13 0.41 31 6 0.19 32 10 0.31 33 1 0.03 ACGTcount: A:0.49, C:0.06, G:0.04, T:0.41 Consensus pattern (32 bp): ATTTATATAGTAAGATAACACATTAATATTAA Found at i:95658780 original size:61 final size:65 Alignment explanation
Indices: 95658694--95658870 Score: 170 Period size: 68 Copynumber: 2.7 Consensus size: 65 95658684 AGTGCTTATC * * 95658694 AAGATAAATATTAGATTAAAGTTAATATTAAATCTATTAAATTAATA-AAATATT-T-AT-CTA- 1 AAGATAAATATTAAATTAAATTTAATATTAAATCTATTAAATTAATATAAAT-TTATAATACTAT 95658754 T 65 T * * * * ** 95658755 AAGATAAACATTAAATTAAATTTAATAGTAAGAT-AATCACTTTAATATTAAATTTATAAAATAC 1 AAGATAAATATTAAATTAAATTTAATATTAA-ATCTATTAAATTAATA-TAAATTTAT--AATAC 95658819 TATT 62 TATT * 95658823 AAGATAAGTATTAAATTAAATTTAATATTAAATCTATTAGAA-TAATAT 1 AAGATAAATATTAAATTAAATTTAATATTAAATCTATTA-AATTAATAT 95658871 TATTTTTGGA Statistics Matches: 90, Mismatches: 15, Indels: 16 0.74 0.12 0.13 Matches are distributed among these distances: 61 36 0.40 62 4 0.04 63 5 0.06 66 2 0.02 67 6 0.07 68 37 0.41 ACGTcount: A:0.51, C:0.04, G:0.05, T:0.40 Consensus pattern (65 bp): AAGATAAATATTAAATTAAATTTAATATTAAATCTATTAAATTAATATAAATTTATAATACTATT Found at i:95659650 original size:26 final size:26 Alignment explanation
Indices: 95659614--95659666 Score: 106 Period size: 26 Copynumber: 2.0 Consensus size: 26 95659604 CAAGAAGTAC 95659614 CATGATTGAAAACTCCTTATTGTATA 1 CATGATTGAAAACTCCTTATTGTATA 95659640 CATGATTGAAAACTCCTTATTGTATA 1 CATGATTGAAAACTCCTTATTGTATA 95659666 C 1 C 95659667 TCTTTACGAA Statistics Matches: 27, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 26 27 1.00 ACGTcount: A:0.34, C:0.17, G:0.11, T:0.38 Consensus pattern (26 bp): CATGATTGAAAACTCCTTATTGTATA Found at i:95662668 original size:32 final size:32 Alignment explanation
Indices: 95662627--95662690 Score: 119 Period size: 32 Copynumber: 2.0 Consensus size: 32 95662617 TAGAAGTGAG * 95662627 TAGAAGTTCATCGTCGCTGTAGTCTTCTACAA 1 TAGAAGTTCACCGTCGCTGTAGTCTTCTACAA 95662659 TAGAAGTTCACCGTCGCTGTAGTCTTCTACAA 1 TAGAAGTTCACCGTCGCTGTAGTCTTCTACAA 95662691 CAGCAGCTTC Statistics Matches: 31, Mismatches: 1, Indels: 0 0.97 0.03 0.00 Matches are distributed among these distances: 32 31 1.00 ACGTcount: A:0.25, C:0.23, G:0.19, T:0.33 Consensus pattern (32 bp): TAGAAGTTCACCGTCGCTGTAGTCTTCTACAA Found at i:95665621 original size:52 final size:54 Alignment explanation
Indices: 95665565--95665684 Score: 156 Period size: 52 Copynumber: 2.3 Consensus size: 54 95665555 GTGATATATG * * 95665565 TTCCCATATAAGACCATAGCTAGGCTATGGCATCAGAGCAATGTGAT-ACGT-A 1 TTCCCGTATAAGACCATAGCTAGGCAATGGCATCAGAGCAATGTGATAACGTGA * * * ** 95665617 TTCCCGTATAAGACCATAGTTGGGCAATGGCATCAGTGTGATGTGATAACGTGA 1 TTCCCGTATAAGACCATAGCTAGGCAATGGCATCAGAGCAATGTGATAACGTGA 95665671 TT-CCGTATAAGACC 1 TTCCCGTATAAGACC 95665685 GTATCTGGGA Statistics Matches: 59, Mismatches: 7, Indels: 3 0.86 0.10 0.04 Matches are distributed among these distances: 52 40 0.68 53 16 0.27 54 3 0.05 ACGTcount: A:0.30, C:0.20, G:0.23, T:0.27 Consensus pattern (54 bp): TTCCCGTATAAGACCATAGCTAGGCAATGGCATCAGAGCAATGTGATAACGTGA Found at i:95669970 original size:52 final size:52 Alignment explanation
Indices: 95669912--95670015 Score: 199 Period size: 52 Copynumber: 2.0 Consensus size: 52 95669902 TTAACATTCA 95669912 TCATCGAATAACATTAATATATTCGAGCACAAAGCCAATAAAACCAATCTAT 1 TCATCGAATAACATTAATATATTCGAGCACAAAGCCAATAAAACCAATCTAT * 95669964 TCATCGAATAACATTAATATATTCGAGCACAAAGCCATTAAAACCAATCTAT 1 TCATCGAATAACATTAATATATTCGAGCACAAAGCCAATAAAACCAATCTAT 95670016 CTTTATACAT Statistics Matches: 51, Mismatches: 1, Indels: 0 0.98 0.02 0.00 Matches are distributed among these distances: 52 51 1.00 ACGTcount: A:0.45, C:0.21, G:0.08, T:0.26 Consensus pattern (52 bp): TCATCGAATAACATTAATATATTCGAGCACAAAGCCAATAAAACCAATCTAT Found at i:95676164 original size:24 final size:24 Alignment explanation
Indices: 95676132--95676180 Score: 98 Period size: 24 Copynumber: 2.0 Consensus size: 24 95676122 ATGAAGTAAC 95676132 ATTATAACAAGACCAAATGTGCAT 1 ATTATAACAAGACCAAATGTGCAT 95676156 ATTATAACAAGACCAAATGTGCAT 1 ATTATAACAAGACCAAATGTGCAT 95676180 A 1 A 95676181 ATTTGTCATC Statistics Matches: 25, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 24 25 1.00 ACGTcount: A:0.47, C:0.16, G:0.12, T:0.24 Consensus pattern (24 bp): ATTATAACAAGACCAAATGTGCAT Found at i:95682420 original size:18 final size:18 Alignment explanation
Indices: 95682397--95682432 Score: 54 Period size: 18 Copynumber: 2.0 Consensus size: 18 95682387 ACCATGCAAG * 95682397 CTCTTCAACCTTCTTCTT 1 CTCTTCAACCTTCCTCTT * 95682415 CTCTTCGACCTTCCTCTT 1 CTCTTCAACCTTCCTCTT 95682433 TAAAACCTCT Statistics Matches: 16, Mismatches: 2, Indels: 0 0.89 0.11 0.00 Matches are distributed among these distances: 18 16 1.00 ACGTcount: A:0.08, C:0.42, G:0.03, T:0.47 Consensus pattern (18 bp): CTCTTCAACCTTCCTCTT Found at i:95686564 original size:22 final size:23 Alignment explanation
Indices: 95686539--95686583 Score: 56 Period size: 22 Copynumber: 2.0 Consensus size: 23 95686529 TTTTTAAGGC * 95686539 AAAATGTCATAT-TATTTAAAAA 1 AAAATGTAATATGTATTTAAAAA * 95686561 AAAATTTAATATGGTATTTAAAA 1 AAAATGTAATAT-GTATTTAAAA 95686584 TGTCAATATA Statistics Matches: 19, Mismatches: 2, Indels: 2 0.83 0.09 0.09 Matches are distributed among these distances: 22 10 0.53 24 9 0.47 ACGTcount: A:0.53, C:0.02, G:0.07, T:0.38 Consensus pattern (23 bp): AAAATGTAATATGTATTTAAAAA Found at i:95695808 original size:140 final size:140 Alignment explanation
Indices: 95695556--95695838 Score: 566 Period size: 140 Copynumber: 2.0 Consensus size: 140 95695546 TGGTTAGTAG 95695556 CCTTAAAACATAAATTAAGAATAATGGGAGTGGCTTAGTTGGCATTTTCTTTGTAATTTTCTTGC 1 CCTTAAAACATAAATTAAGAATAATGGGAGTGGCTTAGTTGGCATTTTCTTTGTAATTTTCTTGC 95695621 TTTCAGGAGCAGAAAACACTTTAGCTGTTAGCAGCAACAGCTGGATCAGTTCTTGCTTATAATTT 66 TTTCAGGAGCAGAAAACACTTTAGCTGTTAGCAGCAACAGCTGGATCAGTTCTTGCTTATAATTT 95695686 GATTTCTTAA 131 GATTTCTTAA 95695696 CCTTAAAACATAAATTAAGAATAATGGGAGTGGCTTAGTTGGCATTTTCTTTGTAATTTTCTTGC 1 CCTTAAAACATAAATTAAGAATAATGGGAGTGGCTTAGTTGGCATTTTCTTTGTAATTTTCTTGC 95695761 TTTCAGGAGCAGAAAACACTTTAGCTGTTAGCAGCAACAGCTGGATCAGTTCTTGCTTATAATTT 66 TTTCAGGAGCAGAAAACACTTTAGCTGTTAGCAGCAACAGCTGGATCAGTTCTTGCTTATAATTT 95695826 GATTTCTTAA 131 GATTTCTTAA 95695836 CCT 1 CCT 95695839 ACCAATAGCA Statistics Matches: 143, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 140 143 1.00 ACGTcount: A:0.29, C:0.16, G:0.18, T:0.37 Consensus pattern (140 bp): CCTTAAAACATAAATTAAGAATAATGGGAGTGGCTTAGTTGGCATTTTCTTTGTAATTTTCTTGC TTTCAGGAGCAGAAAACACTTTAGCTGTTAGCAGCAACAGCTGGATCAGTTCTTGCTTATAATTT GATTTCTTAA Found at i:95703099 original size:87 final size:86 Alignment explanation
Indices: 95702981--95703171 Score: 247 Period size: 86 Copynumber: 2.2 Consensus size: 86 95702971 CTACTGCTTC * * * * * * 95702981 GGGAGGTAAGATCTATAAATTCAGCCTGTTACCCTACTGCTTAGGGGTTTAAGGCTCTTTTACCT 1 GGGAGATAAGATCTGT-AATTCAGCCTGTTACCCTAATGCTTAGGGGTTTAAGAC-CTATTACAT * 95703046 TCGATCTGTTTCCCTGCTACTGA 64 TCGATCTGTTTCCCTACTACTGA * * * 95703069 GGGAGATAAGATCTGTAATTCGGTCTGTTACCCTAATGCTTAGGGGTTTAAGACCTATTGCATTC 1 GGGAGATAAGATCTGTAATTCAGCCTGTTACCCTAATGCTTAGGGGTTTAAGACCTATTACATTC * * 95703134 GATCTGTTTCCCTACTGCTTA 66 GATCTGTTTCCCTACTACTGA * 95703155 GGGTGATAAGATCTGTA 1 GGGAGATAAGATCTGTA 95703172 GATATTCAGT Statistics Matches: 90, Mismatches: 13, Indels: 2 0.86 0.12 0.02 Matches are distributed among these distances: 86 42 0.47 87 34 0.38 88 14 0.16 ACGTcount: A:0.22, C:0.20, G:0.23, T:0.35 Consensus pattern (86 bp): GGGAGATAAGATCTGTAATTCAGCCTGTTACCCTAATGCTTAGGGGTTTAAGACCTATTACATTC GATCTGTTTCCCTACTACTGA Found at i:95703165 original size:44 final size:41 Alignment explanation
Indices: 95703045--95703171 Score: 110 Period size: 44 Copynumber: 3.0 Consensus size: 41 95703035 CTCTTTTACC * * * * 95703045 TTCGATCTGTTTCCCTGCTACTGAGGGAGATAAGATCTGTAA 1 TTCGATCTGTTTCCCTACTGCTTAGGG-GATAAGACCTGTAA * * * * * * 95703087 TTCGGTCTGTTACCCTAATGCTTAGGGGTTTAAGACCTATTGCA 1 TTCGATCTGTTTCCCTACTGCTTAGGGG-ATAAGACCT-GT-AA * 95703131 TTCGATCTGTTTCCCTACTGCTTAGGGTGATAAGATCTGTA 1 TTCGATCTGTTTCCCTACTGCTTAGGG-GATAAGACCTGTA 95703172 GATATTCAGT Statistics Matches: 64, Mismatches: 17, Indels: 8 0.72 0.19 0.09 Matches are distributed among these distances: 41 1 0.02 42 28 0.44 43 2 0.03 44 32 0.50 45 1 0.02 ACGTcount: A:0.21, C:0.20, G:0.23, T:0.36 Consensus pattern (41 bp): TTCGATCTGTTTCCCTACTGCTTAGGGGATAAGACCTGTAA Found at i:95703444 original size:43 final size:42 Alignment explanation
Indices: 95703356--95703456 Score: 121 Period size: 43 Copynumber: 2.4 Consensus size: 42 95703346 CGACCTATTT * 95703356 CCCTACTGCTTAGGGGTTTAGATCTGTAAATTCAACCTGTTA 1 CCCTACTGCTTAGGGGTTTAGATCTGAAAATTCAACCTGTTA * * *** * 95703398 CCCTACTGCTTAGGGGTTTGAGGTTTGAAAATTTGGCTTGTTA 1 CCCTACTGCTTAGGGGTTT-AGATCTGAAAATTCAACCTGTTA * 95703441 CCCTATTGCTTAGGGG 1 CCCTACTGCTTAGGGG 95703457 GGTTGAAGCC Statistics Matches: 50, Mismatches: 8, Indels: 1 0.85 0.14 0.02 Matches are distributed among these distances: 42 19 0.38 43 31 0.62 ACGTcount: A:0.20, C:0.19, G:0.25, T:0.37 Consensus pattern (42 bp): CCCTACTGCTTAGGGGTTTAGATCTGAAAATTCAACCTGTTA Found at i:95711740 original size:9 final size:9 Alignment explanation
Indices: 95711722--95711751 Score: 53 Period size: 9 Copynumber: 3.4 Consensus size: 9 95711712 TGCAATGCTG 95711722 ATGC-ATGA 1 ATGCGATGA 95711730 ATGCGATGA 1 ATGCGATGA 95711739 ATGCGATGA 1 ATGCGATGA 95711748 ATGC 1 ATGC 95711752 AAAAAAGCGT Statistics Matches: 21, Mismatches: 0, Indels: 1 0.95 0.00 0.05 Matches are distributed among these distances: 8 4 0.19 9 17 0.81 ACGTcount: A:0.33, C:0.13, G:0.30, T:0.23 Consensus pattern (9 bp): ATGCGATGA Found at i:95721508 original size:41 final size:41 Alignment explanation
Indices: 95721451--95721533 Score: 157 Period size: 41 Copynumber: 2.0 Consensus size: 41 95721441 ACACTCTCCA * 95721451 AACACACTACGCTATATACGGTGAATAGAGATATGCTTAAC 1 AACACACTACGCTATATACGGTGAATAGAGATATGCTCAAC 95721492 AACACACTACGCTATATACGGTGAATAGAGATATGCTCAAC 1 AACACACTACGCTATATACGGTGAATAGAGATATGCTCAAC 95721533 A 1 A 95721534 TTCCCTTATC Statistics Matches: 41, Mismatches: 1, Indels: 0 0.98 0.02 0.00 Matches are distributed among these distances: 41 41 1.00 ACGTcount: A:0.40, C:0.20, G:0.17, T:0.23 Consensus pattern (41 bp): AACACACTACGCTATATACGGTGAATAGAGATATGCTCAAC Found at i:95722052 original size:22 final size:23 Alignment explanation
Indices: 95722024--95722078 Score: 69 Period size: 23 Copynumber: 2.4 Consensus size: 23 95722014 ATATAATATA 95722024 ATATATATATAACAA-CCCA-TAC 1 ATATATATATAACAACCCCACT-C * * 95722046 ATATATATTTATCAACCCCACTC 1 ATATATATATAACAACCCCACTC 95722069 ATATATATAT 1 ATATATATAT 95722079 TATATAAACA Statistics Matches: 28, Mismatches: 3, Indels: 3 0.82 0.09 0.09 Matches are distributed among these distances: 22 13 0.46 23 14 0.50 24 1 0.04 ACGTcount: A:0.44, C:0.22, G:0.00, T:0.35 Consensus pattern (23 bp): ATATATATATAACAACCCCACTC Found at i:95722174 original size:11 final size:11 Alignment explanation
Indices: 95722158--95722183 Score: 52 Period size: 11 Copynumber: 2.4 Consensus size: 11 95722148 CCTACATTAA 95722158 ATATTATATAT 1 ATATTATATAT 95722169 ATATTATATAT 1 ATATTATATAT 95722180 ATAT 1 ATAT 95722184 GTGTAACCTA Statistics Matches: 15, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 11 15 1.00 ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54 Consensus pattern (11 bp): ATATTATATAT Found at i:95722224 original size:62 final size:62 Alignment explanation
Indices: 95722089--95722209 Score: 226 Period size: 62 Copynumber: 2.0 Consensus size: 62 95722079 TATATAAACA 95722089 ACATTAAATATTATATATATTATATATATATATGTGTAACCTACCTTTTAGCACTTCAGCCT 1 ACATTAAATATTATATATATTATATATATATATGTGTAACCTACCTTTTAGCACTTCAGCCT 95722151 ACATTAAATATTATATATA-TATTATATATATATGTGTAACCTACCTTTTAGCACTTCAG 1 ACATTAAATATTATATATATTA-TATATATATATGTGTAACCTACCTTTTAGCACTTCAG 95722210 TCTATCTTCA Statistics Matches: 58, Mismatches: 0, Indels: 2 0.97 0.00 0.03 Matches are distributed among these distances: 61 2 0.03 62 56 0.97 ACGTcount: A:0.36, C:0.15, G:0.07, T:0.42 Consensus pattern (62 bp): ACATTAAATATTATATATATTATATATATATATGTGTAACCTACCTTTTAGCACTTCAGCCT Found at i:95730434 original size:17 final size:17 Alignment explanation
Indices: 95730412--95730457 Score: 92 Period size: 17 Copynumber: 2.7 Consensus size: 17 95730402 CATTAACTCT 95730412 TAAAAAATAAGATTCCC 1 TAAAAAATAAGATTCCC 95730429 TAAAAAATAAGATTCCC 1 TAAAAAATAAGATTCCC 95730446 TAAAAAATAAGA 1 TAAAAAATAAGA 95730458 AAAAAATAAA Statistics Matches: 29, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 17 29 1.00 ACGTcount: A:0.59, C:0.13, G:0.07, T:0.22 Consensus pattern (17 bp): TAAAAAATAAGATTCCC Found at i:95732952 original size:61 final size:59 Alignment explanation
Indices: 95732851--95732981 Score: 145 Period size: 61 Copynumber: 2.2 Consensus size: 59 95732841 TAAAATATAT * * ** * * * ** 95732851 ATTTTTTAATTTTTAGAGTTAGGACTAAGTTGATAGATTTTTTAAATGTTGAGGGCCAA 1 ATTTTTTAATTTTTAGAATTAGAACTAAAATGACAAATTTTGTAAAAATTGAGGGCCAA * 95732910 ATTTATTTAATTTTTTAGAATTAGAACTAAAATGACAAATTTTGTAAAAATTGAGGGCTAA 1 ATTT-TTTAA-TTTTTAGAATTAGAACTAAAATGACAAATTTTGTAAAAATTGAGGGCCAA * 95732971 ATTTGTTAATT 1 ATTTTTTAATT 95732982 AGGATCAAAT Statistics Matches: 59, Mismatches: 11, Indels: 4 0.80 0.15 0.05 Matches are distributed among these distances: 59 6 0.10 60 9 0.15 61 44 0.75 ACGTcount: A:0.36, C:0.05, G:0.16, T:0.44 Consensus pattern (59 bp): ATTTTTTAATTTTTAGAATTAGAACTAAAATGACAAATTTTGTAAAAATTGAGGGCCAA Found at i:95738008 original size:8 final size:8 Alignment explanation
Indices: 95737995--95738044 Score: 50 Period size: 8 Copynumber: 6.5 Consensus size: 8 95737985 CAAGGTTAGG 95737995 AAAAAGAA 1 AAAAAGAA 95738003 AAAAAGAA 1 AAAAAGAA * ** 95738011 AAAACGGG 1 AAAAAGAA * 95738019 AAAATG-- 1 AAAAAGAA 95738025 AAAAAGAA 1 AAAAAGAA 95738033 AAAAAGAA 1 AAAAAGAA 95738041 AAAA 1 AAAA 95738045 GCTGCAAATA Statistics Matches: 35, Mismatches: 5, Indels: 4 0.80 0.11 0.09 Matches are distributed among these distances: 6 5 0.14 8 30 0.86 ACGTcount: A:0.80, C:0.02, G:0.16, T:0.02 Consensus pattern (8 bp): AAAAAGAA Found at i:95738044 original size:22 final size:22 Alignment explanation
Indices: 95738003--95738044 Score: 57 Period size: 22 Copynumber: 1.9 Consensus size: 22 95737993 GGAAAAAGAA * ** 95738003 AAAAAGAAAAAACGGGAAAATG 1 AAAAAGAAAAAAAGAAAAAATG 95738025 AAAAAGAAAAAAAGAAAAAA 1 AAAAAGAAAAAAAGAAAAAA 95738045 GCTGCAAATA Statistics Matches: 17, Mismatches: 3, Indels: 0 0.85 0.15 0.00 Matches are distributed among these distances: 22 17 1.00 ACGTcount: A:0.79, C:0.02, G:0.17, T:0.02 Consensus pattern (22 bp): AAAAAGAAAAAAAGAAAAAATG Found at i:95742948 original size:24 final size:24 Alignment explanation
Indices: 95742904--95742951 Score: 62 Period size: 24 Copynumber: 2.0 Consensus size: 24 95742894 TGTAATATGT * 95742904 TTTTGGGTTGTTTTTTGGTTTTTG 1 TTTTGGGTTGTTGTTTGGTTTTTG * 95742928 TTTTGGTTTGTTGGTTT-GTTTTTG 1 TTTTGGGTTGTT-GTTTGGTTTTTG 95742952 ATATTTTCAA Statistics Matches: 21, Mismatches: 2, Indels: 2 0.84 0.08 0.08 Matches are distributed among these distances: 24 18 0.86 25 3 0.14 ACGTcount: A:0.00, C:0.00, G:0.29, T:0.71 Consensus pattern (24 bp): TTTTGGGTTGTTGTTTGGTTTTTG Found at i:95743914 original size:29 final size:28 Alignment explanation
Indices: 95743882--95743949 Score: 77 Period size: 29 Copynumber: 2.4 Consensus size: 28 95743872 AAAATCACGC 95743882 ATATAATATTTAT-ACAACAAC-CCACACAA 1 ATAT-ATATTTATAAC-ACAACACC-CACAA * 95743911 ATATATATTATATAACACAACACCCACTA 1 ATATATATT-TATAACACAACACCCACAA 95743940 ATATATATTT 1 ATATATATTT 95743950 TGTATATAGG Statistics Matches: 35, Mismatches: 1, Indels: 7 0.81 0.02 0.16 Matches are distributed among these distances: 28 6 0.17 29 25 0.71 30 4 0.11 ACGTcount: A:0.49, C:0.21, G:0.00, T:0.31 Consensus pattern (28 bp): ATATATATTTATAACACAACACCCACAA Found at i:95748210 original size:49 final size:49 Alignment explanation
Indices: 95748143--95748382 Score: 282 Period size: 49 Copynumber: 4.8 Consensus size: 49 95748133 GTAGACAAGG * * * * 95748143 TTATCTAGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAA 1 TTATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGCGACCAA * ** 95748192 TTATCTGGTACACGTAGTAGCTTGCACTTAGTACTACACACATGACCTAA 1 TTATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGCGACC-AA ** * * * * * 95748242 CCATCTGATACACGTAATAGCTTGCACTTAGTACTACACACGTGATCGAA 1 TTATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGCGA-CCAA * * * * 95748292 GTTATCGGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAA 1 -TTATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGCGACCAA * 95748342 TTATCCGGTACACGTAGTAGCCTGCACTTAGTACTACACAC 1 TTATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACAC 95748383 ATGACCTCAC Statistics Matches: 160, Mismatches: 28, Indels: 6 0.82 0.14 0.03 Matches are distributed among these distances: 49 77 0.48 50 47 0.29 51 36 0.22 ACGTcount: A:0.30, C:0.26, G:0.17, T:0.27 Consensus pattern (49 bp): TTATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGCGACCAA Found at i:95749985 original size:18 final size:19 Alignment explanation
Indices: 95749964--95749999 Score: 65 Period size: 18 Copynumber: 1.9 Consensus size: 19 95749954 TCATTCTAGT 95749964 TTATTTTTATTT-ATTAAA 1 TTATTTTTATTTAATTAAA 95749982 TTATTTTTATTTAATTAA 1 TTATTTTTATTTAATTAA 95750000 CTTTTTATTT Statistics Matches: 17, Mismatches: 0, Indels: 1 0.94 0.00 0.06 Matches are distributed among these distances: 18 12 0.71 19 5 0.29 ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67 Consensus pattern (19 bp): TTATTTTTATTTAATTAAA Found at i:95750027 original size:15 final size:16 Alignment explanation
Indices: 95749967--95750024 Score: 66 Period size: 15 Copynumber: 3.6 Consensus size: 16 95749957 TTCTAGTTTA 95749967 TTTTTATTTATTAAATT 1 TTTTTATTTATTAAA-T * 95749984 ATTTTTATTTAATT-AAC 1 -TTTTTATTT-ATTAAAT 95750001 TTTTTATTT-TTAAAT 1 TTTTTATTTATTAAAT 95750016 TTTTTATTT 1 TTTTTATTT 95750025 TTATTATCTC Statistics Matches: 36, Mismatches: 2, Indels: 7 0.80 0.04 0.16 Matches are distributed among these distances: 14 2 0.06 15 11 0.31 16 9 0.25 18 11 0.31 19 3 0.08 ACGTcount: A:0.28, C:0.02, G:0.00, T:0.71 Consensus pattern (16 bp): TTTTTATTTATTAAAT Found at i:95756815 original size:19 final size:19 Alignment explanation
Indices: 95756791--95756827 Score: 74 Period size: 19 Copynumber: 1.9 Consensus size: 19 95756781 GATAAATCAT 95756791 CACTTTTAATTTGAATAAG 1 CACTTTTAATTTGAATAAG 95756810 CACTTTTAATTTGAATAA 1 CACTTTTAATTTGAATAA 95756828 TGCTTATGAA Statistics Matches: 18, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 19 18 1.00 ACGTcount: A:0.38, C:0.11, G:0.08, T:0.43 Consensus pattern (19 bp): CACTTTTAATTTGAATAAG Found at i:95782102 original size:15 final size:16 Alignment explanation
Indices: 95782082--95782111 Score: 53 Period size: 15 Copynumber: 1.9 Consensus size: 16 95782072 CTGTAAAGAT 95782082 TATACATTC-CATATA 1 TATACATTCTCATATA 95782097 TATACATTCTCATAT 1 TATACATTCTCATAT 95782112 CTCGTACTCT Statistics Matches: 14, Mismatches: 0, Indels: 1 0.93 0.00 0.07 Matches are distributed among these distances: 15 9 0.64 16 5 0.36 ACGTcount: A:0.37, C:0.20, G:0.00, T:0.43 Consensus pattern (16 bp): TATACATTCTCATATA Found at i:95782276 original size:42 final size:42 Alignment explanation
Indices: 95782176--95782288 Score: 120 Period size: 42 Copynumber: 2.6 Consensus size: 42 95782166 CAATACCGAC * ** * ** 95782176 GTCCCAGACGTGGTCTTACATGTAATTCAGTATCGATGCCTCT 1 GTCCCAGACATGGTCTTACA-CAAAATCAGTATCGATGCCAAT * * 95782219 GTCCCTGACAGGGTCTTACACAAAATCAG-ATACGATGCCAAT 1 GTCCCAGACATGGTCTTACACAAAATCAGTAT-CGATGCCAAT 95782261 GTCCCAGACATGGTCTTACACATAAATC 1 GTCCCAGACATGGTCTTACACA-AAATC 95782289 TCAAATCGAG Statistics Matches: 58, Mismatches: 10, Indels: 4 0.81 0.14 0.06 Matches are distributed among these distances: 41 2 0.03 42 34 0.59 43 22 0.38 ACGTcount: A:0.28, C:0.27, G:0.19, T:0.27 Consensus pattern (42 bp): GTCCCAGACATGGTCTTACACAAAATCAGTATCGATGCCAAT Found at i:95784806 original size:42 final size:43 Alignment explanation
Indices: 95784692--95784841 Score: 121 Period size: 42 Copynumber: 3.5 Consensus size: 43 95784682 CAGAGATATC * * * * 95784692 GTGTAAGACCGTGTCTGGGACACAAGCCTCGATTTGATATTTA 1 GTGTAAGACCATGTCTGGGACACAGGCATCGATCTGATATTTA 95784735 CGTGTAAGACCATGTCTGGGACATC-GGCATCGTATCTGAT-TTT- 1 -GTGTAAGACCATGTCTGGGACA-CAGGCATCG-ATCTGATATTTA * * * ** 95784778 GTGTAAGACCCTGTCAGGGACAGAGGCATATATACTGA-A-TTA 1 GTGTAAGACCATGTCTGGGACACAGGCATCGAT-CTGATATTTA * * 95784820 CATGTAAGACCACGTCTGGGAC 1 -GTGTAAGACCATGTCTGGGAC 95784842 GTCGGCATTG Statistics Matches: 86, Mismatches: 13, Indels: 15 0.75 0.11 0.13 Matches are distributed among these distances: 41 4 0.05 42 29 0.34 43 17 0.20 44 29 0.34 45 7 0.08 ACGTcount: A:0.27, C:0.20, G:0.26, T:0.27 Consensus pattern (43 bp): GTGTAAGACCATGTCTGGGACACAGGCATCGATCTGATATTTA Found at i:95784933 original size:15 final size:16 Alignment explanation
Indices: 95784907--95784936 Score: 53 Period size: 15 Copynumber: 1.9 Consensus size: 16 95784897 AGAGTACAAG 95784907 ATATGAGAATGTATAT 1 ATATGAGAATGTATAT 95784923 ATATG-GAATGTATA 1 ATATGAGAATGTATA 95784937 ATCTTTACAG Statistics Matches: 14, Mismatches: 0, Indels: 1 0.93 0.00 0.07 Matches are distributed among these distances: 15 9 0.64 16 5 0.36 ACGTcount: A:0.43, C:0.00, G:0.20, T:0.37 Consensus pattern (16 bp): ATATGAGAATGTATAT Found at i:95786005 original size:16 final size:16 Alignment explanation
Indices: 95785984--95786014 Score: 53 Period size: 16 Copynumber: 1.9 Consensus size: 16 95785974 ATAAATTTGA 95785984 TTAAGTAAGTAAGTAT 1 TTAAGTAAGTAAGTAT * 95786000 TTAAGTAAGTGAGTA 1 TTAAGTAAGTAAGTA 95786015 AGTGTAGAAG Statistics Matches: 14, Mismatches: 1, Indels: 0 0.93 0.07 0.00 Matches are distributed among these distances: 16 14 1.00 ACGTcount: A:0.42, C:0.00, G:0.23, T:0.35 Consensus pattern (16 bp): TTAAGTAAGTAAGTAT Found at i:95793354 original size:55 final size:54 Alignment explanation
Indices: 95793267--95793427 Score: 218 Period size: 53 Copynumber: 3.0 Consensus size: 54 95793257 ATTAGGGTTT * 95793267 AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGATAAGTTTCTATAAGGC 1 AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGGTAAGTTTC-ATAAGGC * * * * 95793322 AAAGG-TCCCATGTAAGACCATGCCAAGGCATGGCATTGGTGAG-TTCATAAGGC 1 -AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGGTAAGTTTCATAAGGC * * * 95793375 AAGGATACCATGTAAGACCATGTCGAGACATGGCAATGGTAAGTTTCAAAAGG 1 AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGGTAAGTTTCATAAGG 95793428 ATACCACGTA Statistics Matches: 91, Mismatches: 12, Indels: 6 0.83 0.11 0.06 Matches are distributed among these distances: 52 4 0.04 53 39 0.43 54 11 0.12 55 33 0.36 56 4 0.04 ACGTcount: A:0.35, C:0.17, G:0.25, T:0.22 Consensus pattern (54 bp): AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGGTAAGTTTCATAAGGC Found at i:95793456 original size:49 final size:48 Alignment explanation
Indices: 95793403--95793519 Score: 137 Period size: 49 Copynumber: 2.4 Consensus size: 48 95793393 CATGTCGAGA * * * 95793403 CATGGCAATGGTAAGTTTCAAAAGGATACC-ACGTAAGAGCATGAAAATT 1 CATGGAAATGGTAAGGTACAAAAGGAT-CCTA-GTAAGAGCATGAAAATT ** * * 95793452 CATGGAAATGGTAAGGTACCCATGTATCCTTAGTAAGAGCATGAAAATT 1 CATGGAAATGGTAAGGTACAAAAGGATCC-TAGTAAGAGCATGAAAATT 95793501 CATGGAAATGGTAAGGTAC 1 CATGGAAATGGTAAGGTAC 95793520 CCATGTATCC Statistics Matches: 59, Mismatches: 7, Indels: 4 0.84 0.10 0.06 Matches are distributed among these distances: 48 2 0.03 49 56 0.95 50 1 0.02 ACGTcount: A:0.38, C:0.14, G:0.24, T:0.24 Consensus pattern (48 bp): CATGGAAATGGTAAGGTACAAAAGGATCCTAGTAAGAGCATGAAAATT Found at i:95793520 original size:49 final size:49 Alignment explanation
Indices: 95793435--95793535 Score: 202 Period size: 49 Copynumber: 2.1 Consensus size: 49 95793425 AGGATACCAC 95793435 GTAAGAGCATGAAAATTCATGGAAATGGTAAGGTACCCATGTATCCTTA 1 GTAAGAGCATGAAAATTCATGGAAATGGTAAGGTACCCATGTATCCTTA 95793484 GTAAGAGCATGAAAATTCATGGAAATGGTAAGGTACCCATGTATCCTTA 1 GTAAGAGCATGAAAATTCATGGAAATGGTAAGGTACCCATGTATCCTTA 95793533 GTA 1 GTA 95793536 TTCCAAGTGG Statistics Matches: 52, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 49 52 1.00 ACGTcount: A:0.37, C:0.14, G:0.23, T:0.27 Consensus pattern (49 bp): GTAAGAGCATGAAAATTCATGGAAATGGTAAGGTACCCATGTATCCTTA Found at i:95795150 original size:43 final size:43 Alignment explanation
Indices: 95795087--95795527 Score: 468 Period size: 43 Copynumber: 10.3 Consensus size: 43 95795077 CATAGGATTT * * 95795087 TCGATATGTG-TTCTCGTGTAAGACCACGTTTAGGACGTTGGCA 1 TCGATATGTGATT-ACGTGTAAGACCACGTCTAGGACGTTGGCA * * * * 95795130 TCGATATGTGCTTACATGTAAGATCACGTCTTGGACGTTGGCA 1 TCGATATGTGATTACGTGTAAGACCACGTCTAGGACGTTGGCA * * * 95795173 TCAATAT-TAGATTACATGTAAGACC-CTGTCTGGGACAG-TGGCA 1 TCGATATGT-GATTACGTGTAAGACCAC-GTCTAGGAC-GTTGGCA * * * * * 95795216 GT-AATATGTGATTACGTGTAAGACCATGTCTAGGACATCGGTA 1 -TCGATATGTGATTACGTGTAAGACCACGTCTAGGACGTTGGCA * * 95795259 TCG-TATTTGATT-TGTGTAAGACC-CTGTCTAGGACAG-TGGCA 1 TCGATATGTGATTACGTGTAAGACCAC-GTCTAGGAC-GTTGGCA * * 95795300 TCGATATGTGATTACGTGTAAGACCACGTCTGGGACGTTGGTA 1 TCGATATGTGATTACGTGTAAGACCACGTCTAGGACGTTGGCA * * * 95795343 TCGATATGTGATTATGTGTAAGACCACGTCTGGGATGTTGGCA 1 TCGATATGTGATTACGTGTAAGACCACGTCTAGGACGTTGGCA * 95795386 TCGATATGTGATTACGTGTAAGACCACGTCTGGGACGTTGGCA 1 TCGATATGTGATTACGTGTAAGACCACGTCTAGGACGTTGGCA * * * ** 95795429 TCAATATGTGATTACGTCTAAGACCACATCTAGGACGTTTACA 1 TCGATATGTGATTACGTGTAAGACCACGTCTAGGACGTTGGCA * * ** 95795472 TCGATATGTGATTACGAGTAAGACCACGTTTAATACGTTGGCA 1 TCGATATGTGATTACGTGTAAGACCACGTCTAGGACGTTGGCA * 95795515 TCGATCTGTGATT 1 TCGATATGTGATT 95795528 CCGATATGTG Statistics Matches: 336, Mismatches: 47, Indels: 30 0.81 0.11 0.07 Matches are distributed among these distances: 41 25 0.07 42 20 0.06 43 285 0.85 44 6 0.02 ACGTcount: A:0.26, C:0.17, G:0.26, T:0.31 Consensus pattern (43 bp): TCGATATGTGATTACGTGTAAGACCACGTCTAGGACGTTGGCA Found at i:95795559 original size:56 final size:56 Alignment explanation
Indices: 95795473--95795661 Score: 272 Period size: 56 Copynumber: 3.4 Consensus size: 56 95795463 ACGTTTACAT * 95795473 CGATATGTGAT-TACGAGTAAGACCACGTTTAATACGTTGGCATCGATCTGTGATTC 1 CGATATGTG-TGTACGAGTAAGACCACGTTTAATACGTTGGCATCGATATGTGATTC * * * 95795529 CGATATGTGTGTGCGAGTAAGACCGCGTTTAATATGTTGGCATCGATATGTGATTC 1 CGATATGTGTGTACGAGTAAGACCACGTTTAATACGTTGGCATCGATATGTGATTC * ** * * 95795585 CAATATGTGTGTGTGAGTAAGACCATGTTTAATACGTTGGCATCGATAGGTGATTC 1 CGATATGTGTGTACGAGTAAGACCACGTTTAATACGTTGGCATCGATATGTGATTC * 95795641 CGATATGTGTTTACGAGTAAG 1 CGATATGTGTGTACGAGTAAG 95795662 TCCCTATCTG Statistics Matches: 118, Mismatches: 14, Indels: 2 0.88 0.10 0.01 Matches are distributed among these distances: 55 1 0.01 56 117 0.99 ACGTcount: A:0.26, C:0.14, G:0.26, T:0.33 Consensus pattern (56 bp): CGATATGTGTGTACGAGTAAGACCACGTTTAATACGTTGGCATCGATATGTGATTC Found at i:95809647 original size:40 final size:40 Alignment explanation
Indices: 95809592--95809732 Score: 255 Period size: 40 Copynumber: 3.5 Consensus size: 40 95809582 TATGTGCATA * 95809592 GCATTCGTGCGGGTTATTATAACCGGGTTAAGTCCTGAAG 1 GCATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCGAAG 95809632 GCATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCGAAG 1 GCATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCGAAG 95809672 GCATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCGAAG 1 GCATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCGAAG * * 95809712 GCATTCGTGCTGGTTGTTATA 1 GCATTCGTGCGGGTTATTATA 95809733 TCCGAGCCAA Statistics Matches: 98, Mismatches: 3, Indels: 0 0.97 0.03 0.00 Matches are distributed among these distances: 40 98 1.00 ACGTcount: A:0.21, C:0.18, G:0.30, T:0.30 Consensus pattern (40 bp): GCATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCGAAG Found at i:95812405 original size:43 final size:41 Alignment explanation
Indices: 95812330--95812489 Score: 239 Period size: 41 Copynumber: 3.9 Consensus size: 41 95812320 TAAAGCTTAG * 95812330 TATAATACACCGGCACAGAGCCTGCTAGGCAATAAGCCTGA 1 TATAATACACCGGCACAAAGCCTGCTAGGCAATAAGCCTGA * 95812371 TATAATACACCGGCATATAAAGCCTGCTAGGCAATAAGCCTGA 1 TATAATACACCGGC--ACAAAGCCTGCTAGGCAATAAGCCTGA * * 95812414 TTTCATACACCGGCACAAAGCCTGCTAGGCAATAAGCCTGA 1 TATAATACACCGGCACAAAGCCTGCTAGGCAATAAGCCTGA * * * 95812455 TTTAATACACTGACACAAAGCCTGCTAGGCAATAA 1 TATAATACACCGGCACAAAGCCTGCTAGGCAATAA 95812490 AGCCCGAATA Statistics Matches: 109, Mismatches: 8, Indels: 4 0.90 0.07 0.03 Matches are distributed among these distances: 41 72 0.66 43 37 0.34 ACGTcount: A:0.36, C:0.26, G:0.19, T:0.20 Consensus pattern (41 bp): TATAATACACCGGCACAAAGCCTGCTAGGCAATAAGCCTGA Found at i:95812444 original size:84 final size:82 Alignment explanation
Indices: 95812334--95812489 Score: 249 Period size: 84 Copynumber: 1.9 Consensus size: 82 95812324 GCTTAGTATA * * * 95812334 ATACACCGGCACAGAGCCTGCTAGGCAATAAGCCTGATATAATACACCGGCATATAAAGCCTGCT 1 ATACACCGGCACAAAGCCTGCTAGGCAATAAGCCTGATATAATACA-CGG-ACACAAAGCCTGCT 95812399 AGGCAATAAGCCTGATTTC 64 AGGCAATAAGCCTGATTTC * * 95812418 ATACACCGGCACAAAGCCTGCTAGGCAATAAGCCTGATTTAATACACTGACACAAAGCCTGCTAG 1 ATACACCGGCACAAAGCCTGCTAGGCAATAAGCCTGATATAATACACGGACACAAAGCCTGCTAG 95812483 GCAATAA 66 GCAATAA 95812490 AGCCCGAATA Statistics Matches: 67, Mismatches: 5, Indels: 2 0.91 0.07 0.03 Matches are distributed among these distances: 82 21 0.31 83 2 0.03 84 44 0.66 ACGTcount: A:0.35, C:0.26, G:0.19, T:0.19 Consensus pattern (82 bp): ATACACCGGCACAAAGCCTGCTAGGCAATAAGCCTGATATAATACACGGACACAAAGCCTGCTAG GCAATAAGCCTGATTTC Found at i:95822126 original size:21 final size:21 Alignment explanation
Indices: 95822102--95822147 Score: 74 Period size: 21 Copynumber: 2.2 Consensus size: 21 95822092 AAATTCTTTC 95822102 AGCTCAAGTATCCCGACTAAT 1 AGCTCAAGTATCCCGACTAAT ** 95822123 AGCTTTAGTATCCCGACTAAT 1 AGCTCAAGTATCCCGACTAAT 95822144 AGCT 1 AGCT 95822148 TTATATCTTC Statistics Matches: 23, Mismatches: 2, Indels: 0 0.92 0.08 0.00 Matches are distributed among these distances: 21 23 1.00 ACGTcount: A:0.30, C:0.26, G:0.15, T:0.28 Consensus pattern (21 bp): AGCTCAAGTATCCCGACTAAT Found at i:95822148 original size:21 final size:21 Alignment explanation
Indices: 95822108--95822154 Score: 87 Period size: 21 Copynumber: 2.3 Consensus size: 21 95822098 TTTCAGCTCA 95822108 AGTATCCCGACTAATAGCTTT 1 AGTATCCCGACTAATAGCTTT 95822129 AGTATCCCGACTAATAGCTTT 1 AGTATCCCGACTAATAGCTTT 95822150 A-TATC 1 AGTATC 95822155 TTCATTTAAT Statistics Matches: 26, Mismatches: 0, Indels: 1 0.96 0.00 0.04 Matches are distributed among these distances: 20 4 0.15 21 22 0.85 ACGTcount: A:0.30, C:0.23, G:0.13, T:0.34 Consensus pattern (21 bp): AGTATCCCGACTAATAGCTTT Found at i:95827602 original size:12 final size:12 Alignment explanation
Indices: 95827585--95827609 Score: 50 Period size: 12 Copynumber: 2.1 Consensus size: 12 95827575 AAACAATATC 95827585 ATAATAATCCTA 1 ATAATAATCCTA 95827597 ATAATAATCCTA 1 ATAATAATCCTA 95827609 A 1 A 95827610 AACTAAAATT Statistics Matches: 13, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 12 13 1.00 ACGTcount: A:0.52, C:0.16, G:0.00, T:0.32 Consensus pattern (12 bp): ATAATAATCCTA Found at i:95832181 original size:37 final size:37 Alignment explanation
Indices: 95832122--95832226 Score: 165 Period size: 37 Copynumber: 2.8 Consensus size: 37 95832112 AGCTCAGACG * * * 95832122 AAATCTCCACACGAAGTTATCGGGTCTTACTCGGACA 1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA 95832159 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA 1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA * * 95832196 TAATCTCCGCACGTAGTCATCGGGTCTTACC 1 AAATCTCCACACGTAGTCATCGGGTCTTACC 95832227 TGGAATATAT Statistics Matches: 63, Mismatches: 5, Indels: 0 0.93 0.07 0.00 Matches are distributed among these distances: 37 63 1.00 ACGTcount: A:0.26, C:0.30, G:0.19, T:0.25 Consensus pattern (37 bp): AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA Found at i:95832444 original size:47 final size:47 Alignment explanation
Indices: 95832392--95832577 Score: 309 Period size: 47 Copynumber: 4.0 Consensus size: 47 95832382 TTTCACACTA * * * * 95832392 GCCATTCGGCTTTACCACATATATGCATGTTCATATTCACCACATTG 1 GCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATTG * * 95832439 GCCATTCGGCCTTATCACACATATGCATGCTCACATTCATCACATTG 1 GCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATTG 95832486 GCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATTG 1 GCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATTG * 95832533 GCCATTCGACCTTATCACATATATGCATGTTCACATTCATCACAT 1 GCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACAT 95832578 AAAATCCTAA Statistics Matches: 130, Mismatches: 9, Indels: 0 0.94 0.06 0.00 Matches are distributed among these distances: 47 130 1.00 ACGTcount: A:0.26, C:0.29, G:0.12, T:0.33 Consensus pattern (47 bp): GCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATTG Found at i:95832552 original size:22 final size:22 Alignment explanation
Indices: 95832477--95832552 Score: 66 Period size: 22 Copynumber: 3.3 Consensus size: 22 95832467 GCTCACATTC * 95832477 ATCACATTGGCCATTCGGCCTT 1 ATCACATTGGCCATTCGACCTT * * 95832499 ATCACATATATG-CATGTTC-ACATT 1 ATCACAT-T-GGCCA--TTCGACCTT 95832523 CATCACATTGGCCATTCGACCTT 1 -ATCACATTGGCCATTCGACCTT 95832546 ATCACAT 1 ATCACAT 95832553 ATATGCATGT Statistics Matches: 42, Mismatches: 5, Indels: 14 0.69 0.08 0.23 Matches are distributed among these distances: 22 17 0.40 23 8 0.19 24 7 0.17 25 10 0.24 ACGTcount: A:0.26, C:0.29, G:0.12, T:0.33 Consensus pattern (22 bp): ATCACATTGGCCATTCGACCTT Found at i:95837092 original size:26 final size:27 Alignment explanation
Indices: 95837026--95837094 Score: 88 Period size: 27 Copynumber: 2.6 Consensus size: 27 95837016 AGCGAGCATT * 95837026 ATCGGGAAGCTCATAAAGAGCCAATTTA 1 ATCGGGAAGCTCATAAAGAACC-ATTTA * 95837054 AT-GGGAAGTTCATAAAGAACC-TTTA 1 ATCGGGAAGCTCATAAAGAACCATTTA * 95837079 ATCGGGATGCTCATAA 1 ATCGGGAAGCTCATAA 95837095 GAGCTAAGGT Statistics Matches: 36, Mismatches: 4, Indels: 4 0.82 0.09 0.09 Matches are distributed among these distances: 25 6 0.17 26 11 0.31 27 17 0.47 28 2 0.06 ACGTcount: A:0.38, C:0.16, G:0.22, T:0.25 Consensus pattern (27 bp): ATCGGGAAGCTCATAAAGAACCATTTA Found at i:95840010 original size:12 final size:12 Alignment explanation
Indices: 95839993--95840017 Score: 50 Period size: 12 Copynumber: 2.1 Consensus size: 12 95839983 AAACAATATC 95839993 ATAATAATCCTA 1 ATAATAATCCTA 95840005 ATAATAATCCTA 1 ATAATAATCCTA 95840017 A 1 A 95840018 AACTAAAATT Statistics Matches: 13, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 12 13 1.00 ACGTcount: A:0.52, C:0.16, G:0.00, T:0.32 Consensus pattern (12 bp): ATAATAATCCTA Found at i:95850825 original size:20 final size:20 Alignment explanation
Indices: 95850802--95850846 Score: 54 Period size: 20 Copynumber: 2.2 Consensus size: 20 95850792 TTCCAGATCA * 95850802 ATTTAATATTAAAGAATAAT 1 ATTTAATATCAAAGAATAAT ** * 95850822 ATTTTCTATCAAGGAATAAT 1 ATTTAATATCAAAGAATAAT 95850842 ATTTA 1 ATTTA 95850847 CGTATATATT Statistics Matches: 20, Mismatches: 5, Indels: 0 0.80 0.20 0.00 Matches are distributed among these distances: 20 20 1.00 ACGTcount: A:0.47, C:0.04, G:0.07, T:0.42 Consensus pattern (20 bp): ATTTAATATCAAAGAATAAT Found at i:95851659 original size:35 final size:35 Alignment explanation
Indices: 95851549--95851659 Score: 111 Period size: 35 Copynumber: 3.2 Consensus size: 35 95851539 CAGAGTCAAT * 95851549 CAGATACCA-ATTCCGGCCTAAGCCCATCAT-AGATA 1 CAGATA-CATATTCGGGCCTAAGCCCATC-TCAGATA * * 95851584 CAGATGCATATTCGAGCCTAAGCCCAT-TCCAGATA 1 CAGATACATATTCGGGCCTAAGCCCATCT-CAGATA * * * * 95851619 TAGATACATATTTGGGCCTAAGCCCATCTCAAATG 1 CAGATACATATTCGGGCCTAAGCCCATCTCAGATA 95851654 CAGATA 1 CAGATA 95851660 TAGATATACA Statistics Matches: 62, Mismatches: 10, Indels: 8 0.77 0.12 0.10 Matches are distributed among these distances: 33 1 0.02 34 2 0.03 35 58 0.94 36 1 0.02 ACGTcount: A:0.33, C:0.27, G:0.16, T:0.23 Consensus pattern (35 bp): CAGATACATATTCGGGCCTAAGCCCATCTCAGATA Found at i:95858745 original size:35 final size:35 Alignment explanation
Indices: 95858665--95858775 Score: 127 Period size: 35 Copynumber: 3.2 Consensus size: 35 95858655 CAGAGTCAAT * * * * 95858665 CAGATACCA-ATTCGGGCCTGAGCCCATCACAGAGA 1 CAGATA-CATATTCGGGCCTAAGCCCATCTCAAATA * 95858700 CAGATGCATATTCGGGCCTAAGCCCAT-TCTAAATA 1 CAGATACATATTCGGGCCTAAGCCCATCTC-AAATA * * 95858735 TAGATACATATTTGGGCCTAAGCCCATCTCAAATA 1 CAGATACATATTCGGGCCTAAGCCCATCTCAAATA 95858770 CAGATA 1 CAGATA 95858776 TAGATATACA Statistics Matches: 64, Mismatches: 9, Indels: 6 0.81 0.11 0.08 Matches are distributed among these distances: 34 3 0.05 35 59 0.92 36 2 0.03 ACGTcount: A:0.33, C:0.26, G:0.18, T:0.23 Consensus pattern (35 bp): CAGATACATATTCGGGCCTAAGCCCATCTCAAATA Found at i:95867495 original size:40 final size:40 Alignment explanation
Indices: 95867411--95867594 Score: 196 Period size: 40 Copynumber: 4.6 Consensus size: 40 95867401 TTGAATGCTG * * * * 95867411 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACT-AT 1 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTATTAAT ** * 95867450 ATCCGGACTAAGAT-CCGAAGGTATTTGTGCGAGTTATTAAT 1 -TCCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGTTATTAAT * * * 95867491 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAGATACTAAT 1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTATTAAT * * 95867531 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTT-TTAAAA 1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTATT-AAT 95867571 TCCGGGTTAAGTCCCGAAGGCATT 1 TCCGGGTTAAGTCCCGAAGGCATT 95867595 GAATGAGTTA Statistics Matches: 123, Mismatches: 16, Indels: 10 0.83 0.11 0.07 Matches are distributed among these distances: 39 2 0.02 40 111 0.90 41 10 0.08 ACGTcount: A:0.24, C:0.21, G:0.27, T:0.28 Consensus pattern (40 bp): TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTATTAAT Found at i:95867548 original size:80 final size:81 Alignment explanation
Indices: 95867411--95867591 Score: 221 Period size: 80 Copynumber: 2.3 Consensus size: 81 95867401 TTGAATGCTG * * * 95867411 TCCGGGCTAAGTCCCGAAGG-CTTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGTATT 1 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAAGTGACTATATCCGGACTAAGATCCGAAGGCATT * * 95867475 TGTGCGAGTTATT-AAT 66 CGTGCGAGTT-TTAAAA ** 95867491 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCG-AGAT-ACTA-ATTCCGGGTTAAG-TCCCGAAGGC 1 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAAG-TGACTATA-TCCGGACTAAGAT-CCGAAGGC 95867552 ATTCGTGCGAGTTTTAAAA 63 ATTCGTGCGAGTTTTAAAA 95867571 TCCGGGTTAAGTCCCGAAGGC 1 TCCGGGTTAAGTCCCGAAGGC 95867592 ATTGAATGAG Statistics Matches: 89, Mismatches: 7, Indels: 10 0.84 0.07 0.09 Matches are distributed among these distances: 79 4 0.04 80 76 0.85 81 9 0.10 ACGTcount: A:0.24, C:0.21, G:0.28, T:0.28 Consensus pattern (81 bp): TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAAGTGACTATATCCGGACTAAGATCCGAAGGCATT CGTGCGAGTTTTAAAA Found at i:95867615 original size:39 final size:39 Alignment explanation
Indices: 95867479--95867641 Score: 141 Period size: 40 Copynumber: 4.1 Consensus size: 39 95867469 GGTATTTGTG * * * ** 95867479 CGAGTTATTAATTCCGGGTTAAGTCCCGAAGGCCTTTGTG 1 CGAGTTATAAAATCCGGGTTAAGTCCCGAAGG-CATTGAA * * ** 95867519 CGAGATACT-AATTCCGGGTTAAGTCCCGAAGGCATTCGTG 1 CGAGTTA-TAAAATCCGGGTTAAGTCCCGAAGGCATT-GAA * 95867559 CGAGTTTTAAAATCCGGGTTAAGTCCCGAAGGCATTGAA 1 CGAGTTATAAAATCCGGGTTAAGTCCCGAAGGCATTGAA * * * * 95867598 TGAGTTAATATAA-CCGGGCTATGTCCCGAAGGCACTTGAA 1 CGAGTT-ATAAAATCCGGGTTAAGTCCCGAAGGCA-TTGAA 95867638 CGAG 1 CGAG 95867642 GAGCTAAATC Statistics Matches: 105, Mismatches: 13, Indels: 10 0.82 0.10 0.08 Matches are distributed among these distances: 39 29 0.28 40 75 0.71 41 1 0.01 ACGTcount: A:0.26, C:0.20, G:0.27, T:0.26 Consensus pattern (39 bp): CGAGTTATAAAATCCGGGTTAAGTCCCGAAGGCATTGAA Found at i:95869317 original size:8 final size:8 Alignment explanation
Indices: 95869306--95869331 Score: 52 Period size: 8 Copynumber: 3.2 Consensus size: 8 95869296 CTTTATCCCT 95869306 TTCTTTTA 1 TTCTTTTA 95869314 TTCTTTTA 1 TTCTTTTA 95869322 TTCTTTTA 1 TTCTTTTA 95869330 TT 1 TT 95869332 TATATTTCGT Statistics Matches: 18, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 8 18 1.00 ACGTcount: A:0.12, C:0.12, G:0.00, T:0.77 Consensus pattern (8 bp): TTCTTTTA Found at i:95872169 original size:13 final size:13 Alignment explanation
Indices: 95872148--95872182 Score: 52 Period size: 13 Copynumber: 2.7 Consensus size: 13 95872138 TTACGAAGGG * 95872148 CACATGAGCTAGT 1 CACACGAGCTAGT 95872161 CACACGAGCTAGT 1 CACACGAGCTAGT * 95872174 CACAGGAGC 1 CACACGAGC 95872183 GTGTGTGTTG Statistics Matches: 20, Mismatches: 2, Indels: 0 0.91 0.09 0.00 Matches are distributed among these distances: 13 20 1.00 ACGTcount: A:0.31, C:0.29, G:0.26, T:0.14 Consensus pattern (13 bp): CACACGAGCTAGT Found at i:95883287 original size:47 final size:47 Alignment explanation
Indices: 95883172--95883293 Score: 144 Period size: 47 Copynumber: 2.6 Consensus size: 47 95883162 GCCCATAAAT * * * 95883172 GAACTCGGACTCAACTCAACGAGCTC-GAGCGTTTGCATCCGTAAGT 1 GAACTCGGACTCAACTCAACGAGCTCGGAGCCTTTACATCCGTAAGC * 95883218 GAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACAT-C-TCA-C 1 GAACTCGGACTCAACTCAACGAGCTCGGA-GCCT--TTACATCCGTAAGC * 95883265 GAACTCGGACTCAACTCAACGAGTTCGGA 1 GAACTCGGACTCAACTCAACGAGCTCGGA 95883294 ACTCAACCAT Statistics Matches: 67, Mismatches: 5, Indels: 7 0.85 0.06 0.09 Matches are distributed among these distances: 46 26 0.39 47 30 0.45 48 5 0.07 49 1 0.01 50 5 0.07 ACGTcount: A:0.28, C:0.30, G:0.22, T:0.20 Consensus pattern (47 bp): GAACTCGGACTCAACTCAACGAGCTCGGAGCCTTTACATCCGTAAGC Found at i:95885469 original size:22 final size:22 Alignment explanation
Indices: 95885444--95885489 Score: 65 Period size: 22 Copynumber: 2.1 Consensus size: 22 95885434 TCACAACAAC * * 95885444 ATGGTGAGCGTTTCATTTGCCA 1 ATGGTGAACATTTCATTTGCCA * 95885466 ATGGTGAACATTTCATTTGTCA 1 ATGGTGAACATTTCATTTGCCA 95885488 AT 1 AT 95885490 TCTATAATCT Statistics Matches: 21, Mismatches: 3, Indels: 0 0.88 0.12 0.00 Matches are distributed among these distances: 22 21 1.00 ACGTcount: A:0.24, C:0.15, G:0.22, T:0.39 Consensus pattern (22 bp): ATGGTGAACATTTCATTTGCCA Found at i:95887783 original size:39 final size:40 Alignment explanation
Indices: 95887709--95887932 Score: 287 Period size: 40 Copynumber: 5.7 Consensus size: 40 95887699 GCTCCTCGTT * 95887709 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA 1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA * 95887749 CAAATGCCTTC-GGACTTAACCCGGATTTAGTAACTCGCA 1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA * 95887788 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA 1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA * * * 95887828 CCAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA 1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA * * * * * 95887867 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA 1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA 95887908 CAAA-GCCTTCGGGACTTAGCCCGGA 1 CAAATGCCTTCGGGACTTAGCCCGGA 95887933 CATCATTCAA Statistics Matches: 163, Mismatches: 15, Indels: 12 0.86 0.08 0.06 Matches are distributed among these distances: 38 2 0.01 39 66 0.40 40 84 0.52 41 11 0.07 ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25 Consensus pattern (40 bp): CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA Found at i:95887812 original size:79 final size:79 Alignment explanation
Indices: 95887709--95887932 Score: 283 Period size: 79 Copynumber: 2.8 Consensus size: 79 95887699 GCTCCTCGTT * * 95887709 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGACTTAACCCGGA 1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGACTTAGCCCGGA * 95887774 TTTAGTAACTCGCA 66 ATTAGTAACTCGCA * * * 95887788 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCACCAATGCCTTCGGGCTTAGCCCGG 1 CAAATGCCTTCGGGACTTAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGACTTAGCCCGG * 95887852 AATTAGTATCTCGCA 65 AATTAGTAACTCGCA * * * * * 95887867 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGCCC 1 CAAATGCCTTCGGGA-CTTAGCCCGGTTATAGTAAC-TCGCACAAATGCCTTC-GGACTTAGCCC 95887930 GGA 63 GGA 95887933 CATCATTCAA Statistics Matches: 125, Mismatches: 15, Indels: 9 0.84 0.10 0.06 Matches are distributed among these distances: 78 4 0.03 79 99 0.79 80 22 0.18 ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25 Consensus pattern (79 bp): CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGACTTAGCCCGGA ATTAGTAACTCGCA Found at i:95895887 original size:39 final size:40 Alignment explanation
Indices: 95895730--95895954 Score: 242 Period size: 40 Copynumber: 5.7 Consensus size: 40 95895720 GCTCCTCGTT * ** 95895730 CAAATGCCTTCGGGACATAGGCCGG-TTATAGTAACTCGCA 1 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCA * 95895770 CAAATGCCTTCTGGACTTAACCCGGATTTAGTAACTCGCA 1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA * 95895810 CAAATGACTTCGGGACTTAACCCGGATTTAGTAACTCGCA 1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA * * * * 95895850 CCAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA 1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA ** * * * * * 95895889 CAAATGCCTTC-GGATCTTAGTCCGAATATGGTCACTTAGCA 1 CAAATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCA * 95895930 CAAA-GCCTTCGGGACTTAGCCCGGA 1 CAAATGCCTTCGGGACTTAACCCGGA 95895955 CATCATTCAA Statistics Matches: 158, Mismatches: 22, Indels: 10 0.83 0.12 0.05 Matches are distributed among these distances: 38 2 0.01 39 32 0.20 40 111 0.70 41 13 0.08 ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25 Consensus pattern (40 bp): CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA Found at i:95895938 original size:79 final size:78 Alignment explanation
Indices: 95895756--95895954 Score: 211 Period size: 79 Copynumber: 2.5 Consensus size: 78 95895746 ATAGGCCGGT * * * * 95895756 TATAGTAACTCGCACAAATGCCTTCTGGACTTAACCCGGATTTAGTAACTCGCACAAATGACTTC 1 TATAGTAACTAGCACAAA-GCCTTC-GGGCTTAGCCCGGAATTAGTAACTCGCACAAATGACTTC * 95895821 GGGACTTAACCCGGA 64 GGGACTTAACCCGAA * * * * * 95895836 TTTAGTAACTCGCACCAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTC- 1 TATAGTAACTAGCA-CAAAGCCTTCGGGCTTAGCCCGGAATTAGTAACTCGCACAAATGACTTCG ** 95895900 GGATCTTAGTCCGAA 65 GGA-CTTAACCCGAA * * 95895915 TATGGTCACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA 1 TATAGTAAC-TAGCACAAAGCCTTCGGG-CTTAGCCCGGA 95895955 CATCATTCAA Statistics Matches: 100, Mismatches: 15, Indels: 8 0.81 0.12 0.07 Matches are distributed among these distances: 78 3 0.03 79 60 0.60 80 34 0.34 81 3 0.03 ACGTcount: A:0.27, C:0.27, G:0.21, T:0.26 Consensus pattern (78 bp): TATAGTAACTAGCACAAAGCCTTCGGGCTTAGCCCGGAATTAGTAACTCGCACAAATGACTTCGG GACTTAACCCGAA Found at i:95895940 original size:119 final size:120 Alignment explanation
Indices: 95895732--95895954 Score: 274 Period size: 119 Copynumber: 1.9 Consensus size: 120 95895722 TCCTCGTTCA * * * 95895732 AATGCCTTCGGGACATAGGCCGGTTATAGTAACTCGCACAAATGCCTTCTGGACTTAACCCGGAT 1 AATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCTGGACTTAACCCGAAT * * 95895797 TTAGTAACTCGCACAAATGACTTCGGGACTTAACCCGGATTTAGTAACTCGCACC 66 ATAGTAACTAGCACAAATGACTTCGGGACTTAACCCGGATTTAGTAACTCGCACC * * ** 95895852 AATGCCTTCGGG-CTTAGCCCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGTCCGA 1 AATGCCTTCGGGACATAGCCCGGATA-TAGTAACTCGCACAAATGCCTTCTGGA-CTTAACCCGA * * * * 95895914 ATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGCCCGGA 64 ATATAGTAAC-TAGCACAAATGACTTCGGGACTTAACCCGGA 95895955 CATCATTCAA Statistics Matches: 87, Mismatches: 13, Indels: 7 0.81 0.12 0.07 Matches are distributed among these distances: 118 4 0.05 119 63 0.72 120 20 0.23 ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25 Consensus pattern (120 bp): AATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCTGGACTTAACCCGAAT ATAGTAACTAGCACAAATGACTTCGGGACTTAACCCGGATTTAGTAACTCGCACC Found at i:95899088 original size:47 final size:47 Alignment explanation
Indices: 95899034--95899166 Score: 230 Period size: 47 Copynumber: 2.8 Consensus size: 47 95899024 AATCGATAAA * * 95899034 TACCTATACCATGGCTCGTAGCCAAATCAAGGTAACTTATCCTGGAG 1 TACCTATACCATGGCCCCTAGCCAAATCAAGGTAACTTATCCTGGAG * 95899081 TACCTATACAATGGCCCCTAGCCAAATCAAGGTAACTTATCCTGGAG 1 TACCTATACCATGGCCCCTAGCCAAATCAAGGTAACTTATCCTGGAG * 95899128 TACCTATACCATGGCCCTTAGCCAAATCAAGGTAACTTA 1 TACCTATACCATGGCCCCTAGCCAAATCAAGGTAACTTA 95899167 CCTCGGTTGT Statistics Matches: 81, Mismatches: 5, Indels: 0 0.94 0.06 0.00 Matches are distributed among these distances: 47 81 1.00 ACGTcount: A:0.32, C:0.27, G:0.17, T:0.25 Consensus pattern (47 bp): TACCTATACCATGGCCCCTAGCCAAATCAAGGTAACTTATCCTGGAG Found at i:95907768 original size:13 final size:13 Alignment explanation
Indices: 95907746--95907778 Score: 50 Period size: 13 Copynumber: 2.6 Consensus size: 13 95907736 AAGGATTTGT 95907746 TTAT-TAAACTAA 1 TTATCTAAACTAA 95907758 TTATCTAAACTAA 1 TTATCTAAACTAA * 95907771 TTAACTAA 1 TTATCTAA 95907779 TTTAATTAAA Statistics Matches: 19, Mismatches: 1, Indels: 1 0.90 0.05 0.05 Matches are distributed among these distances: 12 4 0.21 13 15 0.79 ACGTcount: A:0.48, C:0.12, G:0.00, T:0.39 Consensus pattern (13 bp): TTATCTAAACTAA Found at i:95912076 original size:30 final size:31 Alignment explanation
Indices: 95912041--95912120 Score: 94 Period size: 30 Copynumber: 2.6 Consensus size: 31 95912031 CAAGGAAACC * 95912041 GAATAAAGAAATCCAAGATAGAGAAACCCA- 1 GAATAAAGAAATCCAAGATAAAGAAACCCAT * * 95912071 GAATAAAGAAATCC-AGAATAAAGAGATCCAT 1 GAATAAAGAAATCCAAG-ATAAAGAAACCCAT * 95912102 G-ATAAAGAAACCCAAGATA 1 GAATAAAGAAATCCAAGATA 95912121 TGATACTATG Statistics Matches: 43, Mismatches: 4, Indels: 6 0.81 0.08 0.11 Matches are distributed among these distances: 29 2 0.05 30 38 0.88 31 3 0.07 ACGTcount: A:0.56, C:0.15, G:0.16, T:0.12 Consensus pattern (31 bp): GAATAAAGAAATCCAAGATAAAGAAACCCAT Found at i:95912080 original size:15 final size:15 Alignment explanation
Indices: 95912041--95912111 Score: 83 Period size: 15 Copynumber: 4.7 Consensus size: 15 95912031 CAAGGAAACC 95912041 GAATAAAGAAATCCA 1 GAATAAAGAAATCCA * * 95912056 -AGATAGAGAAACCCA 1 GA-ATAAAGAAATCCA 95912071 GAATAAAGAAATCCA 1 GAATAAAGAAATCCA * 95912086 GAATAAAGAGATCCA 1 GAATAAAGAAATCCA 95912101 TG-ATAAAGAAA 1 -GAATAAAGAAA 95912112 CCCAAGATAT Statistics Matches: 47, Mismatches: 6, Indels: 6 0.80 0.10 0.10 Matches are distributed among these distances: 14 1 0.02 15 44 0.94 16 2 0.04 ACGTcount: A:0.58, C:0.13, G:0.17, T:0.13 Consensus pattern (15 bp): GAATAAAGAAATCCA Found at i:95912120 original size:15 final size:15 Alignment explanation
Indices: 95912043--95912120 Score: 79 Period size: 15 Copynumber: 5.2 Consensus size: 15 95912033 AGGAAACCGA 95912043 ATAAAGAAATCCAAG 1 ATAAAGAAATCCAAG * * 95912058 ATAGAGAAA-CCCAG 1 ATAAAGAAATCCAAG 95912072 AATAAAGAAATCC-AG 1 -ATAAAGAAATCCAAG * * 95912087 AATAAAGAGATCCATG 1 -ATAAAGAAATCCAAG * 95912103 ATAAAGAAACCCAAG 1 ATAAAGAAATCCAAG 95912118 ATA 1 ATA 95912121 TGATACTATG Statistics Matches: 52, Mismatches: 8, Indels: 6 0.79 0.12 0.09 Matches are distributed among these distances: 14 4 0.08 15 45 0.87 16 3 0.06 ACGTcount: A:0.56, C:0.15, G:0.15, T:0.13 Consensus pattern (15 bp): ATAAAGAAATCCAAG Found at i:95915131 original size:46 final size:45 Alignment explanation
Indices: 95915064--95915233 Score: 180 Period size: 46 Copynumber: 3.7 Consensus size: 45 95915054 TGTAACCCGC * * 95915064 CCATAAGTGAACTCGGACTCAACTTAACGAGCTCGGGCGTTCGCAT 1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGC-TTAGCAT * * * 95915110 CCATAAGTGAACTCAGACTCAACTCAACGAGCTCGGATGCCTAG-TT 1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG--GCTTAGCAT * *** * * 95915156 ACATCTCTCGAACTCGGACTCAACTCAACGAGCTCGGACATTTGCAT 1 CCATAAGT-GAACTCGGACTCAACTCAACGAGCTCGGGC-TTAGCAT * 95915203 CCATAAGTGAACTCGAACTCAACTCAACGAG 1 CCATAAGTGAACTCGGACTCAACTCAACGAG 95915234 TTTGGATGCC Statistics Matches: 100, Mismatches: 19, Indels: 10 0.78 0.15 0.08 Matches are distributed among these distances: 45 1 0.01 46 63 0.63 47 34 0.34 48 2 0.02 ACGTcount: A:0.30, C:0.29, G:0.19, T:0.21 Consensus pattern (45 bp): CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCTTAGCAT Found at i:95915231 original size:93 final size:93 Alignment explanation
Indices: 95915072--95915243 Score: 274 Period size: 93 Copynumber: 1.8 Consensus size: 93 95915062 GCCCATAAGT * * * 95915072 GAACTCGGACTCAACTTAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCAGACTCAACTCAA 1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCAA 95915137 CGAGCTCGGATGCCTAGTTACATCTCTC 66 CGAGCTCGGATGCCTAGTTACATCTCTC * 95915165 GAACTCGGACTCAACTCAACGAGCTCGGACATTTGCATCCATAAGTGAACTC-GAACTCAACTCA 1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCAG-ACTCAACTCA * * 95915229 ACGAGTTTGGATGCC 65 ACGAGCTCGGATGCC 95915244 CAAATATCCT Statistics Matches: 72, Mismatches: 6, Indels: 2 0.90 0.08 0.03 Matches are distributed among these distances: 92 1 0.01 93 71 0.99 ACGTcount: A:0.28, C:0.29, G:0.20, T:0.22 Consensus pattern (93 bp): GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCAA CGAGCTCGGATGCCTAGTTACATCTCTC Found at i:95918026 original size:6 final size:6 Alignment explanation
Indices: 95918000--95918077 Score: 86 Period size: 6 Copynumber: 12.5 Consensus size: 6 95917990 AATAAAATTG * * * 95918000 AAATGA AAATAA AAATCA AAAGAA AAATAA AAATAAA AAATAAA AAATAA 1 AAATAA AAATAA AAATAA AAATAA AAATAA AAAT-AA AAAT-AA AAATAA 95918050 AAATAA AAAT-A AAATAA GGAAATAA AAA 1 AAATAA AAATAA AAATAA --AAATAA AAA 95918078 ATAGGAGGAT Statistics Matches: 63, Mismatches: 5, Indels: 8 0.83 0.07 0.11 Matches are distributed among these distances: 5 5 0.08 6 39 0.62 7 13 0.21 8 6 0.10 ACGTcount: A:0.79, C:0.01, G:0.05, T:0.14 Consensus pattern (6 bp): AAATAA Found at i:95918058 original size:32 final size:32 Alignment explanation
Indices: 95918004--95918080 Score: 104 Period size: 32 Copynumber: 2.4 Consensus size: 32 95917994 AAATTGAAAT * 95918004 GAAAAT-AAAAATCAAAAGAAAAATAAAAATAA 1 GAAAATAAAAAATAAAAAGAAAAAT-AAAATAA * 95918036 -AAAATAAAAAATAAAAATAAAAATAAAATAA 1 GAAAATAAAAAATAAAAAGAAAAATAAAATAA * 95918067 GGAAATAAAAAATA 1 GAAAATAAAAAATA 95918081 GGAGGATTCA Statistics Matches: 40, Mismatches: 3, Indels: 4 0.85 0.06 0.09 Matches are distributed among these distances: 31 12 0.30 32 28 0.70 ACGTcount: A:0.79, C:0.01, G:0.05, T:0.14 Consensus pattern (32 bp): GAAAATAAAAAATAAAAAGAAAAATAAAATAA Found at i:95918079 original size:26 final size:25 Alignment explanation
Indices: 95918000--95918080 Score: 78 Period size: 26 Copynumber: 3.2 Consensus size: 25 95917990 AATAAAATTG * * * 95918000 AAATGAAAATAAAAATCAAAA-GAA 1 AAATAAAAATAAAAATAAAAATAAA 95918024 AAATAAAAATAAAAAATAAAAA-ATAA 1 AAATAAAAAT-AAAAATAAAAATA-AA 95918050 AAATAAAAAT-AAAATAAGGAAATAAA 1 AAATAAAAATAAAAATAA--AAATAAA 95918076 AAATA 1 AAATA 95918081 GGAGGATTCA Statistics Matches: 49, Mismatches: 3, Indels: 8 0.82 0.05 0.13 Matches are distributed among these distances: 24 16 0.33 25 10 0.20 26 22 0.45 27 1 0.02 ACGTcount: A:0.79, C:0.01, G:0.05, T:0.15 Consensus pattern (25 bp): AAATAAAAATAAAAATAAAAATAAA Found at i:95923175 original size:5 final size:5 Alignment explanation
Indices: 95923165--95923192 Score: 56 Period size: 5 Copynumber: 5.6 Consensus size: 5 95923155 ATTAATAAAT 95923165 AATAA AATAA AATAA AATAA AATAA AAT 1 AATAA AATAA AATAA AATAA AATAA AAT 95923193 TGCAAGAAAA Statistics Matches: 23, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 5 23 1.00 ACGTcount: A:0.79, C:0.00, G:0.00, T:0.21 Consensus pattern (5 bp): AATAA Found at i:95923495 original size:13 final size:13 Alignment explanation
Indices: 95923473--95923505 Score: 50 Period size: 13 Copynumber: 2.6 Consensus size: 13 95923463 AAGGACTTGT 95923473 TTAT-TAAACTAA 1 TTATCTAAACTAA 95923485 TTATCTAAACTAA 1 TTATCTAAACTAA * 95923498 TTAACTAA 1 TTATCTAA 95923506 TTTAATTAAA Statistics Matches: 19, Mismatches: 1, Indels: 1 0.90 0.05 0.05 Matches are distributed among these distances: 12 4 0.21 13 15 0.79 ACGTcount: A:0.48, C:0.12, G:0.00, T:0.39 Consensus pattern (13 bp): TTATCTAAACTAA Found at i:95927072 original size:49 final size:47 Alignment explanation
Indices: 95927000--95927220 Score: 209 Period size: 49 Copynumber: 4.6 Consensus size: 47 95926990 TATAATGCTG * 95927000 ATGCCATGTCCCAGACATGGTCTTACACTAACTATCGAAATCGAGGCCA 1 ATGCCATGTCCCAGACATGGTCTTACACTAACTATC-AAATCG-TGCCA * * * 95927049 ATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCACATATCTGTGCCG 1 ATGCCATGTCCCAGACATGGTCTTACACTAACTATCA-A-ATC-GTGCCA * * * * * * 95927099 ATGCCATGTCCCAAACATGGTCTTACACTGACACTTTTATA-CGTGTCG 1 ATGCCATGTCCCAGACATGGTCTTACACT-A-ACTATCAAATCGTGCCA * ** 95927147 ATGCCATGTCCCAAACATGGTCTTACACTAAC-A-CATCTCGTAGCCA 1 ATGCCATGTCCCAGACATGGTCTTACACTAACTATCAAATCGT-GCCA * 95927193 ACG-CATGTCCCAGACAT-GTCTTACACTA 1 ATGCCATGTCCCAGACATGGTCTTACACTA 95927221 GCTTACATGT Statistics Matches: 148, Mismatches: 17, Indels: 19 0.80 0.09 0.10 Matches are distributed among these distances: 44 13 0.09 45 16 0.11 46 6 0.04 47 1 0.01 48 35 0.24 49 36 0.24 50 35 0.24 51 2 0.01 52 4 0.03 ACGTcount: A:0.27, C:0.30, G:0.16, T:0.26 Consensus pattern (47 bp): ATGCCATGTCCCAGACATGGTCTTACACTAACTATCAAATCGTGCCA Found at i:95927124 original size:50 final size:48 Alignment explanation
Indices: 95926999--95927176 Score: 191 Period size: 48 Copynumber: 3.6 Consensus size: 48 95926989 GTATAATGCT * * * * 95926999 GATGCCATGTCCCAGACATGGTCTTACACTAACTATCGAA-ATCGAGGCC 1 GATGCCATGTCCCAAACATGGTCTTACACTAGCTCTC-AATATCG-TGCC * * 95927048 AATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCACATATCTGTGCC 1 GATGCCATGTCCCAAACATGGTCTTACACTAGCTCTCA-ATATC-GTGCC * ** * 95927098 GATGCCATGTCCCAAACATGGTCTTACACT-GACACT-TTTATACGTGTC 1 GATGCCATGTCCCAAACATGGTCTTACACTAG-CTCTCAATAT-CGTGCC 95927146 GATGCCATGTCCCAAACATGGTCTTACACTA 1 GATGCCATGTCCCAAACATGGTCTTACACTA 95927177 ACACATCTCG Statistics Matches: 113, Mismatches: 10, Indels: 12 0.84 0.07 0.09 Matches are distributed among these distances: 48 38 0.34 49 37 0.33 50 37 0.33 51 1 0.01 ACGTcount: A:0.26, C:0.29, G:0.17, T:0.27 Consensus pattern (48 bp): GATGCCATGTCCCAAACATGGTCTTACACTAGCTCTCAATATCGTGCC Done.