Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A06
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 115140250
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2234201 characters in sequence are not A, C, G, or T
File 285 of 345
Found at i:97160967 original size:31 final size:31
Alignment explanation
Indices: 97160929--97161100 Score: 274
Period size: 31 Copynumber: 5.5 Consensus size: 31
97160919 TTTAACGGGT
*
97160929 ACTGGGCCGAAGCCTTTTCATAAATCATATC
1 ACTGGGCCGAAGCCTTATCATAAATCATATC
97160960 ACTGGGCCGAAGCCTTATCATAAATCATATC
1 ACTGGGCCGAAGCCTTATCATAAATCATATC
97160991 ACTGGGCCGAAGCCTTATCATAAATCATATC
1 ACTGGGCCGAAGCCTTATCATAAATCATATC
97161022 ACTGGGCCGAAGCCTTATCATAAATCATATC
1 ACTGGGCCGAAGCCTTATCATAAATCATATC
* * *
97161053 TCT-GGCCTGAAGCCTTTTCATAAATTATATC
1 ACTGGGCC-GAAGCCTTATCATAAATCATATC
* *
97161084 ACTAGGCCAAAGCCTTA
1 ACTGGGCCGAAGCCTTA
97161101 CTGTAAACGG
Statistics
Matches: 132, Mismatches: 7, Indels: 4
0.92 0.05 0.03
Matches are distributed among these distances:
30 4 0.03
31 124 0.94
32 4 0.03
ACGTcount: A:0.31, C:0.26, G:0.16, T:0.28
Consensus pattern (31 bp):
ACTGGGCCGAAGCCTTATCATAAATCATATC
Found at i:97161345 original size:24 final size:24
Alignment explanation
Indices: 97161305--97161400 Score: 113
Period size: 25 Copynumber: 3.9 Consensus size: 24
97161295 TTAGAGGCCT
*
97161305 AGCCTCTTTTAAT-AACTGGGGCAA
1 AGCC-CTTTTGATAAACTGGGGCAA
97161329 AGCCCTTTTGATAAACTGGGGCAA
1 AGCCCTTTTGATAAACTGGGGCAA
** *
97161353 AGCTATTTTCGGTAAACTGGGGCAA
1 AGCCCTTTT-GATAAACTGGGGCAA
*
97161378 AGCCCATTTCGATAAACTGGGGC
1 AGCCC-TTTTGATAAACTGGGGC
97161401 GTACCCCTTT
Statistics
Matches: 61, Mismatches: 8, Indels: 5
0.82 0.11 0.07
Matches are distributed among these distances:
23 7 0.11
24 22 0.36
25 29 0.48
26 3 0.05
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (24 bp):
AGCCCTTTTGATAAACTGGGGCAA
Found at i:97161374 original size:25 final size:25
Alignment explanation
Indices: 97161318--97161400 Score: 116
Period size: 25 Copynumber: 3.4 Consensus size: 25
97161308 CTCTTTTAAT
*
97161318 AACTGGGGCAAAGCCCTTTT-GATA
1 AACTGGGGCAAAGCCATTTTCGATA
* *
97161342 AACTGGGGCAAAGCTATTTTCGGTA
1 AACTGGGGCAAAGCCATTTTCGATA
97161367 AACTGGGGCAAAGCCCA-TTTCGATA
1 AACTGGGGCAAAG-CCATTTTCGATA
97161392 AACTGGGGC
1 AACTGGGGC
97161401 GTACCCCTTT
Statistics
Matches: 52, Mismatches: 5, Indels: 3
0.87 0.08 0.05
Matches are distributed among these distances:
24 18 0.35
25 32 0.62
26 2 0.04
ACGTcount: A:0.29, C:0.20, G:0.28, T:0.23
Consensus pattern (25 bp):
AACTGGGGCAAAGCCATTTTCGATA
Found at i:97162249 original size:27 final size:26
Alignment explanation
Indices: 97162231--97162312 Score: 110
Period size: 27 Copynumber: 3.1 Consensus size: 26
97162221 CATTTTACAA
**
97162231 TACAGGGGAATTACGGTCACTTTACCC
1 TACAGGGGCTTTACGGTCACTTTA-CC
97162258 TACAGGGGCTTTACGGTCACTTTATCC
1 TACAGGGGCTTTACGGTCACTTTA-CC
**
97162285 TACAGGGGCTTTACGGTCTTTTTACC
1 TACAGGGGCTTTACGGTCACTTTACC
97162311 TA
1 TA
97162313 ATAGTGGTAT
Statistics
Matches: 50, Mismatches: 5, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
26 4 0.08
27 46 0.92
ACGTcount: A:0.21, C:0.24, G:0.22, T:0.33
Consensus pattern (26 bp):
TACAGGGGCTTTACGGTCACTTTACC
Found at i:97162394 original size:27 final size:27
Alignment explanation
Indices: 97162341--97162673 Score: 215
Period size: 27 Copynumber: 12.3 Consensus size: 27
97162331 TTTCACCCTG
* * ** *
97162341 CAAGGGTGTTTTGGTAAATCGACAAAC
1 CAAGGGTATTTTGGTAATTTTATAAAC
** *
97162368 CAAGGGTATTTCAGTAATTTTGTAAAC
1 CAAGGGTATTTTGGTAATTTTATAAAC
* * * *
97162395 CAATGGTATTTCT-ATAATTTTTAGAAAGT
1 CAAGGGTATTT-TGGTAA-TTTTATAAA-C
* * *
97162424 CAAAGGTATTTCT-GTAATTTTGTAAAT
1 CAAGGGTATTT-TGGTAATTTTATAAAC
* * *
97162451 CAGGGGTATTTTGGTAATTTTACAAAT
1 CAAGGGTATTTTGGTAATTTTATAAAC
** * * *
97162478 TGAGGGTATTTCGGTAATTTCACAAAC
1 CAAGGGTATTTTGGTAATTTTATAAAC
* *
97162505 CAATGGTATTTTGGTAATTTTACAAAC
1 CAAGGGTATTTTGGTAATTTTATAAAC
* * * *
97162532 TAGGGGTATGTTGGTAATTTTACAAAC
1 CAAGGGTATTTTGGTAATTTTATAAAC
* * * *
97162559 CAGGGGTATTTTAGTAATTTTACAGAC
1 CAAGGGTATTTTGGTAATTTTATAAAC
* *
97162586 C-AGGGTATTTTGGTAATTTTACT-GAT
1 CAAGGGTATTTTGGTAATTTTA-TAAAC
* *
97162612 CGAGGGTATTTTGGTAATTTTGTAAAC
1 CAAGGGTATTTTGGTAATTTTATAAAC
* ** *
97162639 CAATGGTATTTTAATAATTTTATAAAT
1 CAAGGGTATTTTGGTAATTTTATAAAC
*
97162666 CGAGGGTA
1 CAAGGGTA
97162674 AACCAGTAAT
Statistics
Matches: 243, Mismatches: 56, Indels: 14
0.78 0.18 0.04
Matches are distributed among these distances:
26 23 0.09
27 191 0.79
28 14 0.06
29 15 0.06
ACGTcount: A:0.31, C:0.09, G:0.20, T:0.39
Consensus pattern (27 bp):
CAAGGGTATTTTGGTAATTTTATAAAC
Found at i:97162683 original size:27 final size:27
Alignment explanation
Indices: 97162653--97162781 Score: 134
Period size: 27 Copynumber: 4.8 Consensus size: 27
97162643 GGTATTTTAA
* *
97162653 TAATTTTATAAATCGAGGGTAAACCAG
1 TAATTCTATAAATCGAGGGTAAAACAG
* * *
97162680 TAATTCTGTAAATCAAGGGTAAAATAG
1 TAATTCTATAAATCGAGGGTAAAACAG
* * *
97162707 TAATTCTATAAATCGATGATAAAACGG
1 TAATTCTATAAATCGAGGGTAAAACAG
*
97162734 TAATTCTGTAAATCGAGGGTAAAAC-G
1 TAATTCTATAAATCGAGGGTAAAACAG
* * *
97162760 ATAATTATGTAAATCGGGGGTA
1 -TAATTCTATAAATCGAGGGTA
97162782 CTTTGGTAAT
Statistics
Matches: 85, Mismatches: 16, Indels: 2
0.83 0.16 0.02
Matches are distributed among these distances:
26 1 0.01
27 84 0.99
ACGTcount: A:0.41, C:0.09, G:0.20, T:0.29
Consensus pattern (27 bp):
TAATTCTATAAATCGAGGGTAAAACAG
Found at i:97162683 original size:54 final size:54
Alignment explanation
Indices: 97162625--97162775 Score: 140
Period size: 54 Copynumber: 2.8 Consensus size: 54
97162615 GGGTATTTTG
* * *** * * *
97162625 GTAATTTTGTAAACCAATGGTATTTTAATAATTTTATAAATCGAGGGTAAACCA
1 GTAATTCTGTAAACCAAGGGTAAAATAATAATTCTATAAATCGAGGATAAAACA
* * * *
97162679 GTAATTCTGTAAATCAAGGGTAAAATAGTAATTCTATAAATCGATGATAAAACG
1 GTAATTCTGTAAACCAAGGGTAAAATAATAATTCTATAAATCGAGGATAAAACA
* * ** * *
97162733 GTAATTCTGTAAATCGAGGGTAAAACGATAATTATGTAAATCG
1 GTAATTCTGTAAACCAAGGGTAAAATAATAATTCTATAAATCG
97162776 GGGGTACTTT
Statistics
Matches: 79, Mismatches: 18, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
54 79 1.00
ACGTcount: A:0.41, C:0.09, G:0.17, T:0.32
Consensus pattern (54 bp):
GTAATTCTGTAAACCAAGGGTAAAATAATAATTCTATAAATCGAGGATAAAACA
Found at i:97162700 original size:134 final size:134
Alignment explanation
Indices: 97162454--97162700 Score: 289
Period size: 134 Copynumber: 1.8 Consensus size: 134
97162444 TGTAAATCAG
* **
97162454 GGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCGGTAATTTCACAAACCAATGGTATTTTGG
1 GGGTATTTTGGTAATTTTACAAATCGAGGGTATTTCGGTAATTTCACAAACCAATGGTATTTTAA
* ***** * *
97162519 TAATTTTACAAACTAGGGGTATGTTGGTAATTTTACAAACCAGGGGTATTTTAGTAATTTTACAG
66 TAATTTTACAAACGAGGGGTAAACCAGTAATTCTACAAACCAAGGGTATTTTAGTAATTTTACAG
97162584 ACCA
131 ACCA
** * ***
97162588 GGGTATTTTGGTAATTTTACTGATCGAGGGTATTTTGGTAATTTTGTAAACCAATGGTATTTTAA
1 GGGTATTTTGGTAATTTTACAAATCGAGGGTATTTCGGTAATTTCACAAACCAATGGTATTTTAA
* ** *
97162653 TAATTTTATAAATCGA-GGGTAAACCAGTAATTCTGTAAATCAAGGGTA
66 TAATTTTACAAA-CGAGGGGTAAACCAGTAATTCTACAAACCAAGGGTA
97162701 AAATAGTAAT
Statistics
Matches: 91, Mismatches: 21, Indels: 2
0.80 0.18 0.02
Matches are distributed among these distances:
134 89 0.98
135 2 0.02
ACGTcount: A:0.31, C:0.09, G:0.21, T:0.38
Consensus pattern (134 bp):
GGGTATTTTGGTAATTTTACAAATCGAGGGTATTTCGGTAATTTCACAAACCAATGGTATTTTAA
TAATTTTACAAACGAGGGGTAAACCAGTAATTCTACAAACCAAGGGTATTTTAGTAATTTTACAG
ACCA
Found at i:97170014 original size:29 final size:29
Alignment explanation
Indices: 97169981--97170040 Score: 120
Period size: 29 Copynumber: 2.1 Consensus size: 29
97169971 GCCATAGATT
97169981 CAAAAGTTCATTTATAAAAATACCGAAGA
1 CAAAAGTTCATTTATAAAAATACCGAAGA
97170010 CAAAAGTTCATTTATAAAAATACCGAAGA
1 CAAAAGTTCATTTATAAAAATACCGAAGA
97170039 CA
1 CA
97170041 GATGATAGTG
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 31 1.00
ACGTcount: A:0.52, C:0.15, G:0.10, T:0.23
Consensus pattern (29 bp):
CAAAAGTTCATTTATAAAAATACCGAAGA
Found at i:97172280 original size:40 final size:40
Alignment explanation
Indices: 97172097--97172313 Score: 262
Period size: 40 Copynumber: 5.5 Consensus size: 40
97172087 CGGATGATAA
* * *
97172097 CCGGGCTAAGTCCCGAAGGCATTTGCGCTAGTGACTAGT-T
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-TAT
* * *
97172137 CCGGGCTAAGTCCCGAAGGCATTTGTGTGAGTTATTACAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* * *
97172177 CCGGGCTAAGTCCCGAAGGCATTTGTGCCAGTTATTACAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
97172217 CCGGGCTAAGTCCCGAAGGCATTGGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
97172257 CCGGGCTATGTCCCGAAGGCA-TTGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
* *
97172296 CC-GGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
97172314 TACTTGGCTT
Statistics
Matches: 157, Mismatches: 18, Indels: 6
0.87 0.10 0.03
Matches are distributed among these distances:
38 15 0.10
39 15 0.10
40 127 0.81
ACGTcount: A:0.23, C:0.24, G:0.29, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:97180140 original size:40 final size:40
Alignment explanation
Indices: 97180085--97180300 Score: 251
Period size: 40 Copynumber: 5.5 Consensus size: 40
97180075 CGGATGATAA
* * * **
97180085 CCGGGCTAAGTCCCGAAGGCATTTGCGCTAGTGACTAGTT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTACAT
*
97180125 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTACAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTACAT
* * *
97180165 CTGGGCTAAGTCCCGAAGGCATTTGTGCCAGTTATTACAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTACAT
* *
97180205 CCGGGCTAAGTCCCGAAGGCATTGGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTACAT
* * *
97180245 CCGGGCTATGT-CCGAAGGCA-TTGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTACAT
* *
97180283 CC-GGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
97180301 TACTTGGCTT
Statistics
Matches: 155, Mismatches: 19, Indels: 6
0.86 0.11 0.03
Matches are distributed among these distances:
37 7 0.05
38 22 0.14
39 9 0.06
40 117 0.75
ACGTcount: A:0.23, C:0.23, G:0.29, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTACAT
Found at i:97181967 original size:56 final size:56
Alignment explanation
Indices: 97181907--97182039 Score: 187
Period size: 56 Copynumber: 2.4 Consensus size: 56
97181897 TCCCAGACAG
*
97181907 GGTCTTACTCGCACACATATATCGGAGTCACATATCAATG-CTAACGTATAAAACGT
1 GGTCTTACTCGCACACATATATCGAAGTCACATATCAATGTC-AACGTATAAAACGT
* * *
97181963 GGTCTTACTCGCACACATATTTCGAAGTCACATATCGATGTCAACGTATAAAATGT
1 GGTCTTACTCGCACACATATATCGAAGTCACATATCAATGTCAACGTATAAAACGT
* * *
97182019 TGTCTTAATTGCACACATATA
1 GGTCTTACTCGCACACATATA
97182040 ACGATGCCAT
Statistics
Matches: 68, Mismatches: 8, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
56 67 0.99
57 1 0.01
ACGTcount: A:0.33, C:0.22, G:0.15, T:0.30
Consensus pattern (56 bp):
GGTCTTACTCGCACACATATATCGAAGTCACATATCAATGTCAACGTATAAAACGT
Found at i:97191080 original size:6 final size:6
Alignment explanation
Indices: 97191069--97191104 Score: 51
Period size: 5 Copynumber: 6.5 Consensus size: 6
97191059 TTCTTTTTTG
97191069 TTCTTT TTC-TT TTC-TT TTCTTT TTCTTT TT-TTT TTC
1 TTCTTT TTCTTT TTCTTT TTCTTT TTCTTT TTCTTT TTC
97191105 ACGAGCATTT
Statistics
Matches: 28, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
5 15 0.54
6 13 0.46
ACGTcount: A:0.00, C:0.17, G:0.00, T:0.83
Consensus pattern (6 bp):
TTCTTT
Found at i:97191083 original size:11 final size:10
Alignment explanation
Indices: 97191058--97191102 Score: 63
Period size: 11 Copynumber: 4.3 Consensus size: 10
97191048 GCGCATATGC
97191058 TTTCTTTTTT
1 TTTCTTTTTT
*
97191068 GTTCTTTTTCT
1 TTTCTTTTT-T
97191079 TTTCTTTTCTT
1 TTTCTTTT-TT
97191090 TTTCTTTTTT
1 TTTCTTTTTT
97191100 TTT
1 TTT
97191103 TCACGAGCAT
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
10 13 0.42
11 17 0.55
12 1 0.03
ACGTcount: A:0.00, C:0.13, G:0.02, T:0.84
Consensus pattern (10 bp):
TTTCTTTTTT
Found at i:97191102 original size:16 final size:16
Alignment explanation
Indices: 97191058--97191102 Score: 72
Period size: 16 Copynumber: 2.8 Consensus size: 16
97191048 GCGCATATGC
*
97191058 TTTCTTTTTTGTTCTT
1 TTTCTTTTTTTTTCTT
*
97191074 TTTCTTTTCTTTTCTT
1 TTTCTTTTTTTTTCTT
97191090 TTTCTTTTTTTTT
1 TTTCTTTTTTTTT
97191103 TCACGAGCAT
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 26 1.00
ACGTcount: A:0.00, C:0.13, G:0.02, T:0.84
Consensus pattern (16 bp):
TTTCTTTTTTTTTCTT
Found at i:97193793 original size:40 final size:40
Alignment explanation
Indices: 97193738--97193820 Score: 166
Period size: 40 Copynumber: 2.1 Consensus size: 40
97193728 AGTAAGAGTT
97193738 TAATTAGAATTCTTAGAACAAATTAATAATTAATATATTC
1 TAATTAGAATTCTTAGAACAAATTAATAATTAATATATTC
97193778 TAATTAGAATTCTTAGAACAAATTAATAATTAATATATTC
1 TAATTAGAATTCTTAGAACAAATTAATAATTAATATATTC
97193818 TAA
1 TAA
97193821 GTTCTAATTC
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 43 1.00
ACGTcount: A:0.48, C:0.07, G:0.05, T:0.40
Consensus pattern (40 bp):
TAATTAGAATTCTTAGAACAAATTAATAATTAATATATTC
Found at i:97194004 original size:22 final size:19
Alignment explanation
Indices: 97193965--97194006 Score: 57
Period size: 22 Copynumber: 2.1 Consensus size: 19
97193955 TGCAAAGTTG
97193965 ATAATAATTAATATATATT
1 ATAATAATTAATATATATT
97193984 ATAATAGATATAATTATATATT
1 ATAATA-AT-TAA-TATATATT
97194006 A
1 A
97194007 ATGATTATCA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
19 6 0.30
20 2 0.10
21 3 0.15
22 9 0.45
ACGTcount: A:0.52, C:0.00, G:0.02, T:0.45
Consensus pattern (19 bp):
ATAATAATTAATATATATT
Found at i:97197780 original size:17 final size:17
Alignment explanation
Indices: 97197758--97197792 Score: 61
Period size: 17 Copynumber: 2.1 Consensus size: 17
97197748 TGTGGTCTCA
*
97197758 AAACCATTATTCTGACT
1 AAACCATTATTCTAACT
97197775 AAACCATTATTCTAACT
1 AAACCATTATTCTAACT
97197792 A
1 A
97197793 TACCTTAATT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.40, C:0.23, G:0.03, T:0.34
Consensus pattern (17 bp):
AAACCATTATTCTAACT
Found at i:97212611 original size:34 final size:34
Alignment explanation
Indices: 97212568--97212633 Score: 132
Period size: 34 Copynumber: 1.9 Consensus size: 34
97212558 CCATCTGTTT
97212568 GCAGATGGAAAGCAGTACTGAAATGTAATTTTTG
1 GCAGATGGAAAGCAGTACTGAAATGTAATTTTTG
97212602 GCAGATGGAAAGCAGTACTGAAATGTAATTTT
1 GCAGATGGAAAGCAGTACTGAAATGTAATTTT
97212634 GTACCTAGAG
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 32 1.00
ACGTcount: A:0.36, C:0.09, G:0.26, T:0.29
Consensus pattern (34 bp):
GCAGATGGAAAGCAGTACTGAAATGTAATTTTTG
Found at i:97217389 original size:44 final size:44
Alignment explanation
Indices: 97217329--97217416 Score: 167
Period size: 44 Copynumber: 2.0 Consensus size: 44
97217319 TATCTAAACT
*
97217329 AAGAATTCACAGAAAATAGAATTGGGGAATTACTTTTGGAAAAG
1 AAGAATTCACAGAAAATAGAATTGCGGAATTACTTTTGGAAAAG
97217373 AAGAATTCACAGAAAATAGAATTGCGGAATTACTTTTGGAAAAG
1 AAGAATTCACAGAAAATAGAATTGCGGAATTACTTTTGGAAAAG
97217417 CGATTGAATT
Statistics
Matches: 43, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
44 43 1.00
ACGTcount: A:0.45, C:0.08, G:0.22, T:0.25
Consensus pattern (44 bp):
AAGAATTCACAGAAAATAGAATTGCGGAATTACTTTTGGAAAAG
Found at i:97232095 original size:25 final size:27
Alignment explanation
Indices: 97232058--97232111 Score: 67
Period size: 26 Copynumber: 2.1 Consensus size: 27
97232048 TCAAACATGC
97232058 ATTTAGGTCAATTTAAC-CCTAGGGGT
1 ATTTAGGTCAATTTAACACCTAGGGGT
* **
97232084 ATTTCGGT-AATTTTGCACCTAGGGGT
1 ATTTAGGTCAATTTAACACCTAGGGGT
97232110 AT
1 AT
97232112 AACAGTAATT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
25 6 0.25
26 18 0.75
ACGTcount: A:0.24, C:0.15, G:0.24, T:0.37
Consensus pattern (27 bp):
ATTTAGGTCAATTTAACACCTAGGGGT
Found at i:97233578 original size:26 final size:26
Alignment explanation
Indices: 97233542--97233592 Score: 102
Period size: 26 Copynumber: 2.0 Consensus size: 26
97233532 AAATTCCAAT
97233542 CATGGAACATTTACCTAACCCATTAA
1 CATGGAACATTTACCTAACCCATTAA
97233568 CATGGAACATTTACCTAACCCATTA
1 CATGGAACATTTACCTAACCCATTA
97233593 TCAATTTGTA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.37, C:0.27, G:0.08, T:0.27
Consensus pattern (26 bp):
CATGGAACATTTACCTAACCCATTAA
Found at i:97239434 original size:26 final size:26
Alignment explanation
Indices: 97239405--97239466 Score: 74
Period size: 24 Copynumber: 2.3 Consensus size: 26
97239395 TTATAACTTA
*
97239405 TTTATTTTAAATTGTATATATAT-TAT
1 TTTATTTTAAA-TATATATATATGTAT
97239431 TTTATTTT-AATATATATATATGTAT
1 TTTATTTTAAATATATATATATGTAT
97239456 TATATATTTTA
1 T-T-TATTTTA
97239467 TATTATTACT
Statistics
Matches: 31, Mismatches: 1, Indels: 6
0.82 0.03 0.16
Matches are distributed among these distances:
24 10 0.32
25 6 0.19
26 9 0.29
27 6 0.19
ACGTcount: A:0.35, C:0.00, G:0.03, T:0.61
Consensus pattern (26 bp):
TTTATTTTAAATATATATATATGTAT
Found at i:97239469 original size:26 final size:25
Alignment explanation
Indices: 97239419--97239581 Score: 107
Period size: 24 Copynumber: 6.6 Consensus size: 25
97239409 TTTTAAATTG
97239419 TATATATATTATT-T-TATTTTAATA
1 TATATATATTATTATATATTTT-ATA
97239443 TATATATATGTATTATATATTTTATA
1 TATATATAT-TATTATATATTTTATA
*
97239469 T-TAT-TACTTACT-TATATTTTAT-
1 TATATATA-TTATTATATATTTTATA
*
97239491 TATATTATATTACTTCATAT-TTTTCTA
1 TATA-TATATTA-TT-ATATATTTTATA
*
97239518 T-TATCATATTAATATATATTTTA-A
1 TATAT-ATATTATTATATATTTTATA
*
97239542 CATATATCATTACTTAT-TA-TTTAT-
1 TATATAT-ATTA-TTATATATTTTATA
*
97239566 TATATTATATTTTTAT
1 TATA-TATATTATTAT
97239582 CACATAATAT
Statistics
Matches: 112, Mismatches: 9, Indels: 37
0.71 0.06 0.23
Matches are distributed among these distances:
22 1 0.01
23 16 0.14
24 35 0.31
25 29 0.26
26 21 0.19
27 10 0.09
ACGTcount: A:0.34, C:0.06, G:0.01, T:0.60
Consensus pattern (25 bp):
TATATATATTATTATATATTTTATA
Found at i:97239485 original size:23 final size:24
Alignment explanation
Indices: 97239419--97239576 Score: 114
Period size: 25 Copynumber: 6.5 Consensus size: 24
97239409 TTTTAAATTG
* *
97239419 TATA-TATATTA-TTTTATTTTAA
1 TATATTATATTACTTATATTTTAT
*
97239441 TATATATATATGTA-TTATATATT-T
1 TATAT-TATAT-TACTTATATTTTAT
97239465 TATATTATTACTTACTTATATTTTAT
1 TATATTA-TA-TTACTTATATTTTAT
97239491 TATATTATATTACTTCATATTTT-T
1 TATATTATATTACTT-ATATTTTAT
* * *
97239515 CTATTATCATATTAATATATATTTTAA
1 -TA-TATTATATTACT-TATATTTTAT
*
97239542 CATA-TATCATTACTTAT-TATTTAT
1 TATATTAT-ATTACTTATAT-TTTAT
97239566 TATATTATATT
1 TATATTATATT
97239577 TTTATCACAT
Statistics
Matches: 109, Mismatches: 12, Indels: 28
0.73 0.08 0.19
Matches are distributed among these distances:
22 4 0.04
23 3 0.03
24 36 0.33
25 39 0.36
26 26 0.24
27 1 0.01
ACGTcount: A:0.35, C:0.06, G:0.01, T:0.59
Consensus pattern (24 bp):
TATATTATATTACTTATATTTTAT
Found at i:97239575 original size:41 final size:39
Alignment explanation
Indices: 97239530--97239658 Score: 104
Period size: 41 Copynumber: 3.2 Consensus size: 39
97239520 ATCATATTAA
*
97239530 TATATATTTTAACATATATCATTACTTATTATTTATTATAT
1 TATATATTTTAACATATAT-ATTTCTTATTATTTATTAT-T
*
97239571 TATAT-TTTTATCACATA-ATATTTTTATATTATTATATTATT
1 TATATATTTTA--ACATATATATTTCT-TATTATT-TATTATT
* *
97239612 T-TACATTTTAACAATATATTATTTCATATTA-TTATTATCT
1 TATATATTTTAAC-ATATA-TATTTCTTATTATTTATTAT-T
*
97239652 AATATAT
1 TATATAT
97239659 ATATTTTCAG
Statistics
Matches: 71, Mismatches: 7, Indels: 20
0.72 0.07 0.20
Matches are distributed among these distances:
39 8 0.11
40 16 0.23
41 31 0.44
42 16 0.23
ACGTcount: A:0.36, C:0.07, G:0.00, T:0.57
Consensus pattern (39 bp):
TATATATTTTAACATATATATTTCTTATTATTTATTATT
Found at i:97251411 original size:46 final size:44
Alignment explanation
Indices: 97251308--97251521 Score: 171
Period size: 46 Copynumber: 4.6 Consensus size: 44
97251298 GCATTTGTGA
* *
97251308 AAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGACATTGAGATG-
1 AAGCCAGTGTAAGA-CATGTCTGGGACAT-GC-TCGAC-TCGAGATGT
* * * * *
97251355 AGTGCTAGTGTAATACATGTTTGGGACATGCATCAGCCTCGAGATGT
1 A-AGCCAGTGTAAGACATGTCTGGGACATGC-TC-GACTCGAGATGT
* * *
97251402 AAGCCAGTGTAAGACATGTCTGGGACATGCGCTGGCTACAAGATG-
1 AAGCCAGTGTAAGACATGTCTGGGACATGCTC-GACT-CGAGATGT
* * *
97251447 ATAGTCAGTGTAAGACATGTCTGGGACATGGCTTCGACTTGAGATAT
1 A-AGCCAGTGTAAGACATGTCTGGGACAT-GC-TCGACTCGAGATGT
*
97251494 AAGCCAGTGTAAGACCTTGTCTGGGACA
1 AAGCCAGTGTAAGA-CATGTCTGGGACA
97251522 CGACATCGGC
Statistics
Matches: 137, Mismatches: 21, Indels: 18
0.78 0.12 0.10
Matches are distributed among these distances:
45 5 0.04
46 85 0.62
47 35 0.26
48 12 0.09
ACGTcount: A:0.28, C:0.18, G:0.29, T:0.25
Consensus pattern (44 bp):
AAGCCAGTGTAAGACATGTCTGGGACATGCTCGACTCGAGATGT
Found at i:97252496 original size:13 final size:13
Alignment explanation
Indices: 97252478--97252502 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
97252468 TGGCCGTGTG
97252478 AAGGACACGGGCC
1 AAGGACACGGGCC
97252491 AAGGACACGGGC
1 AAGGACACGGGC
97252503 GTGTGACAGG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.28, G:0.40, T:0.00
Consensus pattern (13 bp):
AAGGACACGGGCC
Found at i:97263673 original size:16 final size:16
Alignment explanation
Indices: 97263652--97263682 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
97263642 CGAGCAAGAA
97263652 AGATGCAATCTGGGTT
1 AGATGCAATCTGGGTT
*
97263668 AGATGCAATTTGGGT
1 AGATGCAATCTGGGT
97263683 AATTTTTGAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.26, C:0.10, G:0.32, T:0.32
Consensus pattern (16 bp):
AGATGCAATCTGGGTT
Found at i:97268139 original size:20 final size:20
Alignment explanation
Indices: 97268073--97268139 Score: 98
Period size: 20 Copynumber: 3.4 Consensus size: 20
97268063 ATTTTGATAA
* *
97268073 ACATGGTATATATGATATGC
1 ACATGATATGTATGATATGC
* *
97268093 AAATGACATGTATGATATGC
1 ACATGATATGTATGATATGC
97268113 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
97268133 ACATGAT
1 ACATGAT
97268140 GTATTCATAA
Statistics
Matches: 41, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
20 41 1.00
ACGTcount: A:0.37, C:0.10, G:0.19, T:0.33
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:97268272 original size:24 final size:24
Alignment explanation
Indices: 97268188--97268296 Score: 164
Period size: 25 Copynumber: 4.5 Consensus size: 24
97268178 GGAGGAAGTG
97268188 TAAAAGGGCTTATGCCCCAGTTAT
1 TAAAAGGGCTTATGCCCCAGTTAT
* *
97268212 GATAAAGGGCTTACGCCCCAGTTAT
1 TA-AAAGGGCTTATGCCCCAGTTAT
*
97268237 GATAAAGGGCTTATGCCCCAGTTAT
1 TA-AAAGGGCTTATGCCCCAGTTAT
*
97268262 TAAAAGGGCTTATGCCCCAATTAT
1 TAAAAGGGCTTATGCCCCAGTTAT
97268286 TAAAAGGGCTT
1 TAAAAGGGCTT
97268297 TACCCACATG
Statistics
Matches: 79, Mismatches: 5, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
24 33 0.42
25 46 0.58
ACGTcount: A:0.30, C:0.20, G:0.22, T:0.28
Consensus pattern (24 bp):
TAAAAGGGCTTATGCCCCAGTTAT
Found at i:97268470 original size:31 final size:31
Alignment explanation
Indices: 97268435--97268497 Score: 108
Period size: 31 Copynumber: 2.0 Consensus size: 31
97268425 CGTTTACAGT
97268435 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
**
97268466 AAAGGCTTCGGCCCAGTGTTATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
97268497 A
1 A
97268498 GTGTGAAACG
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.37, C:0.16, G:0.24, T:0.24
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:97275484 original size:11 final size:11
Alignment explanation
Indices: 97275448--97275503 Score: 57
Period size: 11 Copynumber: 5.5 Consensus size: 11
97275438 CATGGTATGT
97275448 ATGATATGCAC
1 ATGATATGCAC
* *
97275459 ATGACATG--T
1 ATGATATGCAC
97275468 ATGATATGCAC
1 ATGATATGCAC
*
97275479 ATGATATG--T
1 ATGATATGCAC
97275488 ATGATATGCAC
1 ATGATATGCAC
97275499 ATGAT
1 ATGAT
97275504 GTATTCATAA
Statistics
Matches: 35, Mismatches: 6, Indels: 8
0.71 0.12 0.16
Matches are distributed among these distances:
9 15 0.43
11 20 0.57
ACGTcount: A:0.36, C:0.12, G:0.20, T:0.32
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:97275503 original size:20 final size:20
Alignment explanation
Indices: 97275437--97275503 Score: 116
Period size: 20 Copynumber: 3.4 Consensus size: 20
97275427 ATTTTGATAA
*
97275437 ACATGGTATGTATGATATGC
1 ACATGATATGTATGATATGC
*
97275457 ACATGACATGTATGATATGC
1 ACATGATATGTATGATATGC
97275477 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
97275497 ACATGAT
1 ACATGAT
97275504 GTATTCATAA
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 44 1.00
ACGTcount: A:0.34, C:0.12, G:0.21, T:0.33
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:97275637 original size:24 final size:24
Alignment explanation
Indices: 97275552--97275697 Score: 179
Period size: 25 Copynumber: 6.0 Consensus size: 24
97275542 GGAGGAAGTG
97275552 TAAAAGGGCTTATGCCCCAGTTAT
1 TAAAAGGGCTTATGCCCCAGTTAT
* *
97275576 GATCAAGGGCTTATGCCCCAGTTAT
1 TA-AAAGGGCTTATGCCCCAGTTAT
* * *
97275601 GATAAAGGACTTATGCCTCAGTTAT
1 TA-AAAGGGCTTATGCCCCAGTTAT
97275626 TAAAAGGGCTTATGCCCCAGTTAT
1 TAAAAGGGCTTATGCCCCAGTTAT
*
97275650 TAAAAGGGCTT-TGCCCCAGTCAT
1 TAAAAGGGCTTATGCCCCAGTTAT
*
97275673 TAAAAGAGGC-TAGGCCTCCAGTTAT
1 TAAAAG-GGCTTATGCC-CCAGTTAT
97275698 ATGATAAAGC
Statistics
Matches: 107, Mismatches: 11, Indels: 7
0.86 0.09 0.06
Matches are distributed among these distances:
23 18 0.17
24 38 0.36
25 51 0.48
ACGTcount: A:0.29, C:0.21, G:0.22, T:0.28
Consensus pattern (24 bp):
TAAAAGGGCTTATGCCCCAGTTAT
Found at i:97275926 original size:31 final size:31
Alignment explanation
Indices: 97275891--97275953 Score: 108
Period size: 31 Copynumber: 2.0 Consensus size: 31
97275881 CGTTTACAGT
97275891 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
**
97275922 AAAGGCTTCGGCCCAGTGTTATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
97275953 A
1 A
97275954 GTGTGAAACG
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.37, C:0.16, G:0.24, T:0.24
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:97279543 original size:46 final size:48
Alignment explanation
Indices: 97279440--97279617 Score: 195
Period size: 46 Copynumber: 3.8 Consensus size: 48
97279430 TCATTTGTGA
* * *
97279440 AAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTAAGACG-
1 AAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTTGAGACGT
* * *
97279487 AGTGCTAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTCGAGACGT
1 A-AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTTGAGACGT
* * **
97279534 AAGCCAGTGTAAGA-CATGTCTGGGACATGGCTTC-GACTTGAGATAT
1 AAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTTGAGACGT
* * *
97279580 AAGCCAATGTAAAACCTTGTCTGGGACATGGCATCGGC
1 AAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGC
97279618 ATATTTCCCC
Statistics
Matches: 110, Mismatches: 16, Indels: 9
0.81 0.12 0.07
Matches are distributed among these distances:
46 59 0.54
47 38 0.35
48 13 0.12
ACGTcount: A:0.28, C:0.20, G:0.29, T:0.23
Consensus pattern (48 bp):
AAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTTGAGACGT
Found at i:97282214 original size:43 final size:43
Alignment explanation
Indices: 97282112--97282243 Score: 162
Period size: 43 Copynumber: 3.1 Consensus size: 43
97282102 ATATCGATAA
* * * *
97282112 ATCGATGCCACTGTCCCAGACAGGGTCCTACAC-GAATCAAAT
1 ATCGATGCCAATGTCCCAGACATGGTCTTACACAGAATCACAT
* * *
97282154 A-CGATGCCGATGTCCCAGACATGATCTTACACATAATCACAT
1 ATCGATGCCAATGTCCCAGACATGGTCTTACACAGAATCACAT
*
97282196 ATCGATGCCAATGTCCCAGACGTGGTCTTACACGAGAA-CACAT
1 ATCGATGCCAATGTCCCAGACATGGTCTTACAC-AGAATCACAT
97282239 ATCGA
1 ATCGA
97282244 AATCCTATGT
Statistics
Matches: 76, Mismatches: 11, Indels: 5
0.83 0.12 0.05
Matches are distributed among these distances:
41 26 0.34
42 9 0.12
43 38 0.50
44 3 0.04
ACGTcount: A:0.32, C:0.29, G:0.18, T:0.21
Consensus pattern (43 bp):
ATCGATGCCAATGTCCCAGACATGGTCTTACACAGAATCACAT
Found at i:97293777 original size:17 final size:17
Alignment explanation
Indices: 97293752--97293785 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
97293742 TTTAATTCAA
*
97293752 CATATATCAATAAAAAT
1 CATAAATCAATAAAAAT
*
97293769 CATAAATCAATCAAAAT
1 CATAAATCAATAAAAAT
97293786 TTATCCTAAA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.59, C:0.15, G:0.00, T:0.26
Consensus pattern (17 bp):
CATAAATCAATAAAAAT
Found at i:97298447 original size:37 final size:37
Alignment explanation
Indices: 97298386--97298464 Score: 113
Period size: 37 Copynumber: 2.1 Consensus size: 37
97298376 TTATTACGAA
* * * *
97298386 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGAACAAAATCCCCACACGAAGTCATCGG
*
97298423 GTCTTACCCGAACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGAACAAAATCCCCACACGAAGTCATCGG
97298460 GTCTT
1 GTCTT
97298465 TAGAGCTCGG
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.27, C:0.32, G:0.18, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGAACAAAATCCCCACACGAAGTCATCGG
Found at i:97298796 original size:47 final size:47
Alignment explanation
Indices: 97298583--97298785 Score: 325
Period size: 47 Copynumber: 4.3 Consensus size: 47
97298573 CCCTTCGGGA
* * * * * *
97298583 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
97298630 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
97298677 CTTATCACATATATACACTTTCACATTCATCTCATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
97298724 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
97298771 CTTATCACATATATA
1 CTTATCACATATATA
97298786 TACACTCACA
Statistics
Matches: 144, Mismatches: 12, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
47 144 1.00
ACGTcount: A:0.28, C:0.31, G:0.09, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:97302484 original size:27 final size:27
Alignment explanation
Indices: 97302440--97302500 Score: 86
Period size: 27 Copynumber: 2.3 Consensus size: 27
97302430 AATCGTCAAA
* *
97302440 GAATTGGGACTGCCTACGACCCATTGG
1 GAATTGGGACTACCTACGACCCATTAG
* *
97302467 GAATTGGGACTACTTACGACCCTTTAG
1 GAATTGGGACTACCTACGACCCATTAG
97302494 GAATTGG
1 GAATTGG
97302501 AGCTATTTTA
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 30 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (27 bp):
GAATTGGGACTACCTACGACCCATTAG
Found at i:97304164 original size:21 final size:21
Alignment explanation
Indices: 97304140--97304187 Score: 55
Period size: 21 Copynumber: 2.3 Consensus size: 21
97304130 CAAAATAGGG
97304140 ATTAAATTG-AGAAATGTGTAA
1 ATTAAATTGTAGAAATGTG-AA
**
97304161 ATTATGTTGTAGAAATGTGAA
1 ATTAAATTGTAGAAATGTGAA
97304182 A-TAAAT
1 ATTAAAT
97304188 GAAAATTATG
Statistics
Matches: 22, Mismatches: 4, Indels: 3
0.76 0.14 0.10
Matches are distributed among these distances:
20 3 0.14
21 10 0.45
22 9 0.41
ACGTcount: A:0.46, C:0.00, G:0.19, T:0.35
Consensus pattern (21 bp):
ATTAAATTGTAGAAATGTGAA
Found at i:97309928 original size:20 final size:20
Alignment explanation
Indices: 97309903--97309945 Score: 68
Period size: 20 Copynumber: 2.1 Consensus size: 20
97309893 CAAGTAAGGG
* *
97309903 ACACGGGCGTGTCCTAATGC
1 ACACGGGCATGTCCCAATGC
97309923 ACACGGGCATGTCCCAATGC
1 ACACGGGCATGTCCCAATGC
97309943 ACA
1 ACA
97309946 TGAGCGTGTG
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.26, C:0.33, G:0.26, T:0.16
Consensus pattern (20 bp):
ACACGGGCATGTCCCAATGC
Found at i:97317121 original size:43 final size:43
Alignment explanation
Indices: 97317056--97317265 Score: 212
Period size: 43 Copynumber: 4.9 Consensus size: 43
97317046 ATCTCGTACA
* *
97317056 ATGCC-ATATCCCAGATATGGTCTTACATGTTATCACATATCG
1 ATGCCAATATCCCAGACATGGTCTTACATGTAATCACATATCG
* * * * * *
97317098 ATGCCACTATCCCAGACAGGGTCTTACACGAAATCATATAACG
1 ATGCCAATATCCCAGACATGGTCTTACATGTAATCACATATCG
* * * * *
97317141 ATGCCAATGTCCCAGATAGGGTCTTACATGAAATTC-TATAAT-G
1 ATGCCAATATCCCAGACATGGTCTTACATGTAA-TCACAT-ATCG
* *
97317184 ATGCCAATATCCCAGACATGGTCTTATATGTAATCACA-ATACA
1 ATGCCAATATCCCAGACATGGTCTTACATGTAATCACATAT-CG
* *
97317227 ATGCCAATGTCCCAGGCATGGTCTTACATGTAATCACAT
1 ATGCCAATATCCCAGACATGGTCTTACATGTAATCACAT
97317266 CTCGGTAATC
Statistics
Matches: 138, Mismatches: 23, Indels: 12
0.80 0.13 0.07
Matches are distributed among these distances:
41 2 0.01
42 7 0.05
43 126 0.91
44 3 0.02
ACGTcount: A:0.32, C:0.24, G:0.16, T:0.28
Consensus pattern (43 bp):
ATGCCAATATCCCAGACATGGTCTTACATGTAATCACATATCG
Found at i:97322149 original size:8 final size:7
Alignment explanation
Indices: 97322129--97322190 Score: 52
Period size: 7 Copynumber: 8.4 Consensus size: 7
97322119 TTATTCTTTC
97322129 AATTTTT
1 AATTTTT
97322136 AATTTTT
1 AATTTTT
97322143 AATTTTT
1 AATTTTT
**
97322150 AAAAATTT
1 -AATTTTT
97322158 AATTCTTTT
1 AA-T-TTTT
*
97322167 ACTTTTT
1 AATTTTT
**
97322174 AATTTAA
1 AATTTTT
97322181 AATTTTT
1 AATTTTT
97322188 AAT
1 AAT
97322191 ATTATCATTT
Statistics
Matches: 42, Mismatches: 10, Indels: 6
0.72 0.17 0.10
Matches are distributed among these distances:
7 32 0.76
8 6 0.14
9 4 0.10
ACGTcount: A:0.35, C:0.03, G:0.00, T:0.61
Consensus pattern (7 bp):
AATTTTT
Found at i:97322580 original size:12 final size:13
Alignment explanation
Indices: 97322557--97322585 Score: 51
Period size: 12 Copynumber: 2.3 Consensus size: 13
97322547 AATTTGATAT
97322557 TTTTATAATTAAA
1 TTTTATAATTAAA
97322570 TTTTA-AATTAAA
1 TTTTATAATTAAA
97322582 TTTT
1 TTTT
97322586 TATGTTATTA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 11 0.69
13 5 0.31
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (13 bp):
TTTTATAATTAAA
Found at i:97322586 original size:13 final size:14
Alignment explanation
Indices: 97322555--97322588 Score: 54
Period size: 13 Copynumber: 2.6 Consensus size: 14
97322545 AAAATTTGAT
97322555 ATTTTTATAATTAA
1 ATTTTTATAATTAA
97322569 A-TTTTA-AATTAA
1 ATTTTTATAATTAA
97322581 ATTTTTAT
1 ATTTTTAT
97322589 GTTATTAGTC
Statistics
Matches: 18, Mismatches: 0, Indels: 4
0.82 0.00 0.18
Matches are distributed among these distances:
12 7 0.39
13 10 0.56
14 1 0.06
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (14 bp):
ATTTTTATAATTAA
Found at i:97328770 original size:19 final size:19
Alignment explanation
Indices: 97328748--97328788 Score: 57
Period size: 19 Copynumber: 2.2 Consensus size: 19
97328738 TTTGATAATT
97328748 ATTTTTATACTAAGA-TTTA
1 ATTTTT-TACTAAGATTTTA
*
97328767 ATTTTTTTCTAAGATTTTA
1 ATTTTTTACTAAGATTTTA
97328786 ATT
1 ATT
97328789 CGGTAATTGC
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
18 7 0.35
19 13 0.65
ACGTcount: A:0.32, C:0.05, G:0.05, T:0.59
Consensus pattern (19 bp):
ATTTTTTACTAAGATTTTA
Found at i:97330277 original size:31 final size:31
Alignment explanation
Indices: 97330242--97330302 Score: 95
Period size: 31 Copynumber: 2.0 Consensus size: 31
97330232 TAACCCTTTC
*
97330242 TCTTTACACCTTTATTCAATTTGACTCTTAT
1 TCTTTACACATTTATTCAATTTGACTCTTAT
* *
97330273 TCTTTACACATTTATTTAATTTGATTCTTA
1 TCTTTACACATTTATTCAATTTGACTCTTA
97330303 CTTTTTTATT
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
31 27 1.00
ACGTcount: A:0.25, C:0.18, G:0.03, T:0.54
Consensus pattern (31 bp):
TCTTTACACATTTATTCAATTTGACTCTTAT
Found at i:97338168 original size:49 final size:50
Alignment explanation
Indices: 97338041--97338170 Score: 174
Period size: 50 Copynumber: 2.6 Consensus size: 50
97338031 AAAACTGTGA
* **
97338041 TCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTATTAGATGGTGAGG
1 TCACATGTGTAGTACTAAGTGCAGGCTACTACGTATACCAGATGGTGAGG
* * *
97338091 TCACGTGTGTAGTACTAAGTGCAAGCTACTACGTATACCAGACT-GT-TGG
1 TCACATGTGTAGTACTAAGTGCAGGCTACTACGTATACCAGA-TGGTGAGG
*
97338140 TCGCATGTGTAGTACTAAGTGCAGGCTACTA
1 TCACATGTGTAGTACTAAGTGCAGGCTACTA
97338171 TGCGTACCAG
Statistics
Matches: 70, Mismatches: 9, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
49 30 0.43
50 39 0.56
51 1 0.01
ACGTcount: A:0.26, C:0.18, G:0.27, T:0.29
Consensus pattern (50 bp):
TCACATGTGTAGTACTAAGTGCAGGCTACTACGTATACCAGATGGTGAGG
Found at i:97341209 original size:15 final size:15
Alignment explanation
Indices: 97341189--97341243 Score: 69
Period size: 15 Copynumber: 3.7 Consensus size: 15
97341179 GTATCTTGGG
97341189 TTTCTTTATTCTGGA
1 TTTCTTTATTCTGGA
*
97341204 TTTCTTTATTCTGGG
1 TTTCTTTATTCTGGA
*
97341219 TTT-TCTA-TCTTGGA
1 TTTCTTTATTC-TGGA
97341233 TTTCTTTATTC
1 TTTCTTTATTC
97341244 GGTTTTTTTG
Statistics
Matches: 33, Mismatches: 4, Indels: 5
0.79 0.10 0.12
Matches are distributed among these distances:
13 2 0.06
14 9 0.27
15 20 0.61
16 2 0.06
ACGTcount: A:0.11, C:0.15, G:0.13, T:0.62
Consensus pattern (15 bp):
TTTCTTTATTCTGGA
Found at i:97343456 original size:51 final size:50
Alignment explanation
Indices: 97343383--97343573 Score: 190
Period size: 51 Copynumber: 3.8 Consensus size: 50
97343373 TCTATTGTGA
*
97343383 GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGAAAACTGT
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCG-AAACTGT
* * * *** *** *
97343434 GATCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTATTAGATGGTGA
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGAAACTGT
* * * *
97343484 GGTCACGTGTGTAGTACTAAGTGCAAGCTACTA--CGTATACC-AGACTGTT
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTATGCGTA-CCCGAAACTG-T
*
97343533 GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACC
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTATGCGTACC
97343574 AAAGAGCTTC
Statistics
Matches: 110, Mismatches: 26, Indels: 9
0.76 0.18 0.06
Matches are distributed among these distances:
48 6 0.05
49 30 0.27
50 34 0.31
51 40 0.36
ACGTcount: A:0.26, C:0.19, G:0.27, T:0.28
Consensus pattern (50 bp):
GGTCACATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGAAACTGT
Found at i:97343516 original size:50 final size:49
Alignment explanation
Indices: 97343382--97343565 Score: 194
Period size: 50 Copynumber: 3.7 Consensus size: 49
97343372 ATCTATTGTG
* * *
97343382 AGGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTA-CCCGAAAACTGT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTA--CGTATACC--AGACTGT
* * **
97343434 -GATCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTATTAGA-TGGT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTATACCAGACT-GT
* *
97343482 GAGGTCACGTGTGTAGTACTAAGTGCAAGCTACTACGTATACCAGACTGT
1 -AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTATACCAGACTGT
* *
97343532 TGGTCGCATGTGTAGTACTAAGTGCAGGCTACTA
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTA
97343566 TGCGTACCAA
Statistics
Matches: 110, Mismatches: 17, Indels: 13
0.79 0.12 0.09
Matches are distributed among these distances:
47 1 0.01
48 4 0.04
49 33 0.30
50 40 0.36
51 32 0.29
ACGTcount: A:0.27, C:0.18, G:0.27, T:0.28
Consensus pattern (49 bp):
AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTATACCAGACTGT
Found at i:97349221 original size:21 final size:21
Alignment explanation
Indices: 97349197--97349245 Score: 64
Period size: 21 Copynumber: 2.3 Consensus size: 21
97349187 GGGCACACAA
* *
97349197 GCCCGTGTGGTCA-AGGGACAT
1 GCCCGTGTGATCATA-GGACAC
97349218 GCCCGTGTGATCATAGGACAC
1 GCCCGTGTGATCATAGGACAC
97349239 GCCCGTG
1 GCCCGTG
97349246 CTGCAGCCCG
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
21 24 0.96
22 1 0.04
ACGTcount: A:0.18, C:0.29, G:0.35, T:0.18
Consensus pattern (21 bp):
GCCCGTGTGATCATAGGACAC
Found at i:97352087 original size:20 final size:20
Alignment explanation
Indices: 97352062--97352107 Score: 83
Period size: 20 Copynumber: 2.3 Consensus size: 20
97352052 TTGGAGAGTC
97352062 ACACGCCCGTATGGCTTGGG
1 ACACGCCCGTATGGCTTGGG
*
97352082 ACACGCCCGTGTGGCTTGGG
1 ACACGCCCGTATGGCTTGGG
97352102 ACACGC
1 ACACGC
97352108 TCGTTTTCTC
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.15, C:0.33, G:0.35, T:0.17
Consensus pattern (20 bp):
ACACGCCCGTATGGCTTGGG
Found at i:97360564 original size:18 final size:18
Alignment explanation
Indices: 97360541--97360577 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
97360531 AATTAAGTAC
97360541 ATCATCAACATAGAGACA
1 ATCATCAACATAGAGACA
97360559 ATCATCAACATAGAGACA
1 ATCATCAACATAGAGACA
97360577 A
1 A
97360578 ATTATTATTC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.51, C:0.22, G:0.11, T:0.16
Consensus pattern (18 bp):
ATCATCAACATAGAGACA
Found at i:97362996 original size:40 final size:40
Alignment explanation
Indices: 97362949--97363083 Score: 162
Period size: 40 Copynumber: 3.4 Consensus size: 40
97362939 TCAATATCTT
** * *
97362949 GCACACTAAGTTTCGTACATAGCTGAAGCTATCTCAAATC
1 GCACACTAAGTGCCATACATAGCCGAAGCTATCTCAAATC
* * *
97362989 GGACACTAAGTGCCATATATAGCCGAAGCTATGTCAAATC
1 GCACACTAAGTGCCATACATAGCCGAAGCTATCTCAAATC
* * * **
97363029 GCACACTAAGTGCCATATATAGTCGAAGCTATGTCGTATC
1 GCACACTAAGTGCCATACATAGCCGAAGCTATCTCAAATC
97363069 GCACACTAAGTGCCA
1 GCACACTAAGTGCCA
97363084 CAAATGACCG
Statistics
Matches: 84, Mismatches: 11, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
40 84 1.00
ACGTcount: A:0.33, C:0.24, G:0.19, T:0.24
Consensus pattern (40 bp):
GCACACTAAGTGCCATACATAGCCGAAGCTATCTCAAATC
Found at i:97365325 original size:16 final size:16
Alignment explanation
Indices: 97365304--97365372 Score: 129
Period size: 16 Copynumber: 4.2 Consensus size: 16
97365294 TTTGGTTCGC
97365304 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
97365320 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
97365336 TGTATTGGGATTAGAGG
1 TGTATT-GGATTAGAGG
97365353 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
97365369 TGTA
1 TGTA
97365373 ATAGCTAATT
Statistics
Matches: 52, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
16 36 0.69
17 16 0.31
ACGTcount: A:0.25, C:0.00, G:0.38, T:0.38
Consensus pattern (16 bp):
TGTATTGGATTAGAGG
Found at i:97365350 original size:33 final size:32
Alignment explanation
Indices: 97365304--97365372 Score: 129
Period size: 33 Copynumber: 2.1 Consensus size: 32
97365294 TTTGGTTCGC
97365304 TGTATTGGATTAGAGGTGTATTGGATTAGAGG
1 TGTATTGGATTAGAGGTGTATTGGATTAGAGG
97365336 TGTATTGGGATTAGAGGTGTATTGGATTAGAGG
1 TGTATT-GGATTAGAGGTGTATTGGATTAGAGG
97365369 TGTA
1 TGTA
97365373 ATAGCTAATT
Statistics
Matches: 36, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
32 6 0.17
33 30 0.83
ACGTcount: A:0.25, C:0.00, G:0.38, T:0.38
Consensus pattern (32 bp):
TGTATTGGATTAGAGGTGTATTGGATTAGAGG
Found at i:97365695 original size:157 final size:157
Alignment explanation
Indices: 97365495--97365811 Score: 555
Period size: 157 Copynumber: 2.0 Consensus size: 157
97365485 TAGAATACCC
*
97365495 TTAGCATAAAATTGTTTTGGTAAATGATTATTGTTATTGTTATTTAAATTTTAATAAGATTATTA
1 TTAGCAGAAAATTGTTTTGGTAAATGATTATTGTTATTGTTATTTAAATTTTAATAAGATTATTA
* * * *
97365560 TTATCAGTAATAAATATTTTAATCATATTTAAACATAATTATTATTAAATATATTTTAATTAATA
66 ATATCAATAATAAATAATTTAATCATATTTAAACATAATTATTATTAAATATATTATAATTAA-A
97365625 ATATATAATTTAATAAAATTCTT-ATAA
130 ATATATAATTTAATAAAATTCTTAATAA
* *
97365652 TTAGCAGAAATTTGTTTTGGTAAATTATTATTGTTATTGTTATTTAAATTTTAATAAGATTATTA
1 TTAGCAGAAAATTGTTTTGGTAAATGATTATTGTTATTGTTATTTAAATTTTAATAAGATTATTA
97365717 ATATCAATAATAAATAATTTAATCATATTTAAACATAATTATTATTAAATATATTATAATTAAAA
66 ATATCAATAATAAATAATTTAATCATATTTAAACATAATTATTATTAAATATATTATAATTAAAA
97365782 TATATAATTTAATAAAATTCTTAATAA
131 TATATAATTTAATAAAATTCTTAATAA
97365809 TTA
1 TTA
97365812 ATATTCTTAT
Statistics
Matches: 152, Mismatches: 7, Indels: 2
0.94 0.04 0.01
Matches are distributed among these distances:
156 24 0.16
157 128 0.84
ACGTcount: A:0.44, C:0.03, G:0.05, T:0.48
Consensus pattern (157 bp):
TTAGCAGAAAATTGTTTTGGTAAATGATTATTGTTATTGTTATTTAAATTTTAATAAGATTATTA
ATATCAATAATAAATAATTTAATCATATTTAAACATAATTATTATTAAATATATTATAATTAAAA
TATATAATTTAATAAAATTCTTAATAA
Found at i:97365782 original size:16 final size:16
Alignment explanation
Indices: 97365745--97365786 Score: 52
Period size: 15 Copynumber: 2.7 Consensus size: 16
97365735 TTAATCATAT
*
97365745 TTAAACATA-ATTATTA
1 TTAAA-ATATATTATAA
97365761 TT-AAATATATTATAA
1 TTAAAATATATTATAA
97365776 TTAAAATATAT
1 TTAAAATATAT
97365787 AATTTAATAA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
14 3 0.13
15 10 0.43
16 10 0.43
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.45
Consensus pattern (16 bp):
TTAAAATATATTATAA
Found at i:97365793 original size:14 final size:15
Alignment explanation
Indices: 97365754--97365795 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
97365744 TTTAAACATA
*
97365754 ATTATTATTAAATAT
1 ATTATAATTAAATAT
97365769 ATTATAATTAAA-AT
1 ATTATAATTAAATAT
*
97365783 A-TATAATTTAATA
1 ATTATAATTAAATA
97365796 AAATTCTTAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
13 9 0.38
14 4 0.17
15 11 0.46
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (15 bp):
ATTATAATTAAATAT
Found at i:97365882 original size:120 final size:121
Alignment explanation
Indices: 97365748--97366040 Score: 502
Period size: 120 Copynumber: 2.4 Consensus size: 121
97365738 ATCATATTTA
97365748 AACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
1 AACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
* *
97365813 TATTCTTATATGAATTTACTCAAATCATAATATATGATACTGTAAAATATAAA-GT-
66 TATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAAGA-AAATGTG
97365868 AACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
1 AACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
*
97365933 TATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAAGAAAATTTG
66 TATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAAGAAAATGTG
* * *
97365989 AA-ATAATTAATATTAAATATATTTTAATTAAAATATATGATTTAATAAAATT
1 AACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATT
97366041 TAAAATAATT
Statistics
Matches: 165, Mismatches: 6, Indels: 4
0.94 0.03 0.02
Matches are distributed among these distances:
119 3 0.02
120 160 0.97
121 2 0.01
ACGTcount: A:0.50, C:0.05, G:0.03, T:0.42
Consensus pattern (121 bp):
AACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
TATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAAGAAAATGTG
Found at i:97365913 original size:14 final size:15
Alignment explanation
Indices: 97365874--97365915 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
97365864 AAGTAACATA
*
97365874 ATTATTATTAAATAT
1 ATTATAATTAAATAT
97365889 ATTATAATTAAA-AT
1 ATTATAATTAAATAT
*
97365903 A-TATAATTTAATA
1 ATTATAATTAAATA
97365916 AAATTCTTAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
13 9 0.38
14 4 0.17
15 11 0.46
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (15 bp):
ATTATAATTAAATAT
Found at i:97378562 original size:11 final size:12
Alignment explanation
Indices: 97378542--97378574 Score: 50
Period size: 11 Copynumber: 2.8 Consensus size: 12
97378532 CCTCTTATTC
97378542 CCATTCAATCAT
1 CCATTCAATCAT
97378554 CCA-TCAATCAT
1 CCATTCAATCAT
*
97378565 TCATTCAATC
1 CCATTCAATC
97378575 TTTATTCTTC
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
11 10 0.53
12 9 0.47
ACGTcount: A:0.33, C:0.33, G:0.00, T:0.33
Consensus pattern (12 bp):
CCATTCAATCAT
Found at i:97381209 original size:20 final size:19
Alignment explanation
Indices: 97381180--97381218 Score: 69
Period size: 20 Copynumber: 2.0 Consensus size: 19
97381170 AACAACTGGA
97381180 AATAAAAACTAAAATAAAT
1 AATAAAAACTAAAATAAAT
97381199 AATAGAAAACTAAAATAAAT
1 AATA-AAAACTAAAATAAAT
97381219 CAGTGATCGA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 4 0.21
20 15 0.79
ACGTcount: A:0.72, C:0.05, G:0.03, T:0.21
Consensus pattern (19 bp):
AATAAAAACTAAAATAAAT
Found at i:97382755 original size:3 final size:3
Alignment explanation
Indices: 97382749--97382815 Score: 52
Period size: 3 Copynumber: 23.0 Consensus size: 3
97382739 AGCACAATTC
* *
97382749 TAA TAA TAA TAA -AA TAA -ATA TAA TAC TAA TAA CAA TAA TAA -AA
1 TAA TAA TAA TAA TAA TAA TA-A TAA TAA TAA TAA TAA TAA TAA TAA
**
97382792 TAA TAA CCA TAA TAAA TAA -AA TAA
1 TAA TAA TAA TAA T-AA TAA TAA TAA
97382816 ATAAAGAAAA
Statistics
Matches: 50, Mismatches: 8, Indels: 12
0.71 0.11 0.17
Matches are distributed among these distances:
2 7 0.14
3 39 0.78
4 4 0.08
ACGTcount: A:0.67, C:0.06, G:0.00, T:0.27
Consensus pattern (3 bp):
TAA
Found at i:97382772 original size:20 final size:20
Alignment explanation
Indices: 97382749--97382815 Score: 65
Period size: 18 Copynumber: 3.6 Consensus size: 20
97382739 AGCACAATTC
97382749 TAATAATAATAA-AATAAATA
1 TAATAATAATAACAAT-AATA
*
97382769 TAATACTAATAACAAT-A-A
1 TAATAATAATAACAATAATA
*
97382787 TAA-AATAATAACCATAATA
1 TAATAATAATAACAATAATA
97382806 -AATAA-AATAA
1 TAATAATAATAA
97382816 ATAAAGAAAA
Statistics
Matches: 40, Mismatches: 3, Indels: 10
0.75 0.06 0.19
Matches are distributed among these distances:
17 10 0.25
18 12 0.30
19 4 0.10
20 11 0.28
21 3 0.08
ACGTcount: A:0.67, C:0.06, G:0.00, T:0.27
Consensus pattern (20 bp):
TAATAATAATAACAATAATA
Found at i:97382773 original size:17 final size:17
Alignment explanation
Indices: 97382751--97382818 Score: 54
Period size: 17 Copynumber: 4.1 Consensus size: 17
97382741 CACAATTCTA
97382751 ATAATAATAAAATAAAT
1 ATAATAATAAAATAAAT
*
97382768 ATAATACT--AATAACA-
1 ATAATAATAAAATAA-AT
**
97382783 ATAATAA-AATAATAACC
1 ATAATAATAA-AATAAAT
97382800 ATAATAAATAAAATAAAT
1 ATAAT-AATAAAATAAAT
97382818 A
1 A
97382819 AAGAAAAGGG
Statistics
Matches: 39, Mismatches: 5, Indels: 13
0.68 0.09 0.23
Matches are distributed among these distances:
15 11 0.28
16 1 0.03
17 17 0.44
18 8 0.21
19 2 0.05
ACGTcount: A:0.68, C:0.06, G:0.00, T:0.26
Consensus pattern (17 bp):
ATAATAATAAAATAAAT
Found at i:97382777 original size:26 final size:27
Alignment explanation
Indices: 97382748--97382818 Score: 80
Period size: 26 Copynumber: 2.8 Consensus size: 27
97382738 AAGCACAATT
97382748 CTAATAATAATAAAATAAATATAAT-A
1 CTAATAATAATAAAATAAATATAATAA
*
97382774 CTAATAACAAT--AATAAA-ATAATAA
1 CTAATAATAATAAAATAAATATAATAA
*
97382798 C-CATAATAAATAAAATAAATA
1 CTAATAAT-AATAAAATAAATA
97382819 AAGAAAAGGG
Statistics
Matches: 37, Mismatches: 3, Indels: 9
0.76 0.06 0.18
Matches are distributed among these distances:
23 9 0.24
24 11 0.30
26 16 0.43
27 1 0.03
ACGTcount: A:0.66, C:0.07, G:0.00, T:0.27
Consensus pattern (27 bp):
CTAATAATAATAAAATAAATATAATAA
Found at i:97382814 original size:29 final size:30
Alignment explanation
Indices: 97382750--97382820 Score: 74
Period size: 32 Copynumber: 2.3 Consensus size: 30
97382740 GCACAATTCT
*
97382750 AATAATAATAAAATAAATATAATACTAATAAC
1 AATAATAA-AAAATAAACATAATAC-AATAAC
*
97382782 AATAATAAAATAATAACCATAATA-AATAA-
1 AATAATAAAA-AATAAACATAATACAATAAC
97382811 AATAAATAAA
1 AAT-AATAAA
97382821 GAAAAGGGGA
Statistics
Matches: 35, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
29 3 0.09
30 11 0.31
31 2 0.06
32 19 0.54
ACGTcount: A:0.69, C:0.06, G:0.00, T:0.25
Consensus pattern (30 bp):
AATAATAAAAAATAAACATAATACAATAAC
Found at i:97385078 original size:46 final size:45
Alignment explanation
Indices: 97385028--97385200 Score: 181
Period size: 46 Copynumber: 3.8 Consensus size: 45
97385018 GTTGAGCATC
*
97385028 CGAACTCGTTGAGTTGAGTTCGAGTTCACTTACGGATGCGAATGTT
1 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTA-GGATGCGAATGTT
* * *
97385074 CGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA-GATG-TAACTAGGCATT
1 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTAGGATGCGAA-T--G--TT
* * **
97385121 CGAACTCGTTGAGTTGAGTTCGAGTTCACTTATGGATGCGAACGCC
1 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTA-GGATGCGAATGTT
*
97385167 CGAGCTCGTTGAGTTGAGTCCGAGTTCACTTAGG
1 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTAGG
97385201 GGCGGGTTAC
Statistics
Matches: 105, Mismatches: 13, Indels: 19
0.77 0.09 0.14
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 5 0.05
46 56 0.53
47 28 0.27
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.21, C:0.19, G:0.29, T:0.30
Consensus pattern (45 bp):
CGAACTCGTTGAGTTGAGTCCGAGTTCACTTAGGATGCGAATGTT
Found at i:97385140 original size:93 final size:93
Alignment explanation
Indices: 97385023--97385193 Score: 288
Period size: 93 Copynumber: 1.8 Consensus size: 93
97385013 GGATGGTTGA
* **
97385023 GCATCCGAACTCGTTGAGTTGAGTTCGAGTTCACTTACGGATGCGAATGTTCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTTCGAGTTCACTTACGGATGCGAACGCCCGAACTCGTTGAGT
97385088 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* * *
97385116 GCATTCGAACTCGTTGAGTTGAGTTCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTTCGAGTTCACTTACGGATGCGAACGCCCGAACTCGTTGAGT
97385181 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
97385194 ACTTAGGGGC
Statistics
Matches: 72, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.21, C:0.20, G:0.29, T:0.30
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTTCGAGTTCACTTACGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:97392651 original size:46 final size:46
Alignment explanation
Indices: 97392600--97392724 Score: 169
Period size: 46 Copynumber: 2.7 Consensus size: 46
97392590 GGTTGAGCAT
* * *
97392600 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTACGGATGCGAATAT
1 CCGAACTCGTTGAGTTGAGTCTGAGTTCACTTACGGATGCAAATAC
* * *
97392646 TCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCAAATGC
1 CCGAACTCGTTGAGTTGAGTCTGAGTTCACTTACGGATGCAAATAC
* * *
97392692 CCGAGCTCGTTGAGTTGATTCTGATTTCACTTA
1 CCGAACTCGTTGAGTTGAGTCTGAGTTCACTTA
97392725 GGGGCGGGTT
Statistics
Matches: 69, Mismatches: 10, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
46 69 1.00
ACGTcount: A:0.22, C:0.20, G:0.25, T:0.33
Consensus pattern (46 bp):
CCGAACTCGTTGAGTTGAGTCTGAGTTCACTTACGGATGCAAATAC
Found at i:97396774 original size:46 final size:45
Alignment explanation
Indices: 97396724--97396899 Score: 212
Period size: 46 Copynumber: 3.8 Consensus size: 45
97396714 TGGTTGAGCA
97396724 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
*** * *
97396770 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAG-GCA-
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-GCGAAG
*
97396817 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* *
97396863 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
97396900 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 12, Indels: 14
0.81 0.09 0.10
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 1 0.01
46 69 0.62
47 32 0.29
48 1 0.01
49 3 0.03
50 1 0.01
ACGTcount: A:0.21, C:0.21, G:0.30, T:0.28
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAG
Found at i:97396880 original size:93 final size:93
Alignment explanation
Indices: 97396721--97396891 Score: 306
Period size: 93 Copynumber: 1.8 Consensus size: 93
97396711 GGATGGTTGA
* *
97396721 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
97396786 TGAGTCCGAGTTCGAGAGATGTAACTAG
66 TGAGTCCGAGTTCGAGAGATGTAACTAG
* *
97396814 GCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
97396879 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
97396892 ACTTATGGGC
Statistics
Matches: 74, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.27
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGAGAGATGTAACTAG
Found at i:97399815 original size:15 final size:15
Alignment explanation
Indices: 97399795--97399863 Score: 84
Period size: 15 Copynumber: 4.6 Consensus size: 15
97399785 GTATCTTGGG
97399795 TTTCTTTATCCTGGA
1 TTTCTTTATCCTGGA
* *
97399810 TATCTTTATTCTGGA
1 TTTCTTTATCCTGGA
* *
97399825 TTTCTTTATTCTGGG
1 TTTCTTTATCCTGGA
* *
97399840 TTTCTCTATCTTGGA
1 TTTCTTTATCCTGGA
97399855 TTTCTTTAT
1 TTTCTTTAT
97399864 TCGGTTTTCT
Statistics
Matches: 45, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
15 45 1.00
ACGTcount: A:0.13, C:0.16, G:0.13, T:0.58
Consensus pattern (15 bp):
TTTCTTTATCCTGGA
Found at i:97399864 original size:30 final size:30
Alignment explanation
Indices: 97399786--97399873 Score: 99
Period size: 30 Copynumber: 3.0 Consensus size: 30
97399776 CATAGTATCG
* * * *
97399786 TATCTTGGGTTTCTTTATCCTGGATATCTT
1 TATCTTGGATTTCTTTATTCTGGATTTCTC
*
97399816 TAT-TCTGGATTTCTTTATTCTGGGTTTCTC
1 TATCT-TGGATTTCTTTATTCTGGATTTCTC
*
97399846 TATCTTGGATTTCTTTATTC-GGTTTTCT
1 TATCTTGGATTTCTTTATTCTGGATTTCT
97399874 TGTTATCTTT
Statistics
Matches: 50, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
29 8 0.16
30 41 0.82
31 1 0.02
ACGTcount: A:0.11, C:0.16, G:0.16, T:0.57
Consensus pattern (30 bp):
TATCTTGGATTTCTTTATTCTGGATTTCTC
Found at i:97402305 original size:46 final size:44
Alignment explanation
Indices: 97402255--97402430 Score: 201
Period size: 46 Copynumber: 3.8 Consensus size: 44
97402245 TGGTTGAGCA
97402255 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG-GAA-G
*** * *
97402301 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAGGCA-
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-GGAAG
*
97402348 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG-GAA-G
* *
97402394 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
97402431 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 12, Indels: 14
0.81 0.09 0.10
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 1 0.01
46 69 0.62
47 32 0.29
48 1 0.01
49 3 0.03
50 1 0.01
ACGTcount: A:0.21, C:0.20, G:0.30, T:0.29
Consensus pattern (44 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGGAAG
Found at i:97402411 original size:93 final size:93
Alignment explanation
Indices: 97402252--97402422 Score: 297
Period size: 93 Copynumber: 1.8 Consensus size: 93
97402242 GGATGGTTGA
* *
97402252 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
97402317 TGAGTCCGAGTTCGAGAGATGTAACTAG
66 TGAGTCCGAGTTCGAGAGATGTAACTAG
* * *
97402345 GCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
97402410 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
97402423 ACTTATGGGC
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.21, C:0.21, G:0.30, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGAGAGATGTAACTAG
Found at i:97408494 original size:39 final size:39
Alignment explanation
Indices: 97408470--97408600 Score: 180
Period size: 39 Copynumber: 3.4 Consensus size: 39
97408460 GACTTTAGGC
*
97408470 CCGGATAT-CTTCCAGCACGTAGCCT-GTGGACCTCAAGT
1 CCGGATATGTTTCCAGCACGTAGCCTCG-GGACCTCAAGT
*
97408508 CCGGATATGTTTCCAGCACGTAG-CTTGCGGACCTCAAGT
1 CCGGATATGTTTCCAGCACGTAGCCTCG-GGACCTCAAGT
*
97408547 CCGGATATGTTTCCAGCACGTAGCCT-GCGGAACTCAAGT
1 CCGGATATGTTTCCAGCACGTAGCCTCG-GGACCTCAAGT
97408586 CCGGATATGTTTCCA
1 CCGGATATGTTTCCA
97408601 AATATCATGC
Statistics
Matches: 87, Mismatches: 3, Indels: 5
0.92 0.03 0.05
Matches are distributed among these distances:
38 10 0.11
39 75 0.86
40 2 0.02
ACGTcount: A:0.21, C:0.29, G:0.24, T:0.25
Consensus pattern (39 bp):
CCGGATATGTTTCCAGCACGTAGCCTCGGGACCTCAAGT
Found at i:97410741 original size:39 final size:39
Alignment explanation
Indices: 97410686--97410816 Score: 219
Period size: 39 Copynumber: 3.4 Consensus size: 39
97410676 GGACTTTAGC
* *
97410686 CCGGATAT-CTTCCAGCACGTAGCCTGTGGACCTCAAGT
1 CCGGATATGTTTCCAGCACGTAGCCTGCGGACCTCAAGT
*
97410724 CCGGATATGTTTCCAGCACGTAGCTTGCGGACCTCAAGT
1 CCGGATATGTTTCCAGCACGTAGCCTGCGGACCTCAAGT
*
97410763 CCGGATATGTTTCCAGCACGTAGCCTGCGGAACTCAAGT
1 CCGGATATGTTTCCAGCACGTAGCCTGCGGACCTCAAGT
97410802 CCGGATATGTTTCCA
1 CCGGATATGTTTCCA
97410817 AATATCATGC
Statistics
Matches: 87, Mismatches: 5, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
38 8 0.09
39 79 0.91
ACGTcount: A:0.21, C:0.29, G:0.24, T:0.25
Consensus pattern (39 bp):
CCGGATATGTTTCCAGCACGTAGCCTGCGGACCTCAAGT
Found at i:97412926 original size:39 final size:40
Alignment explanation
Indices: 97412883--97413032 Score: 146
Period size: 39 Copynumber: 3.9 Consensus size: 40
97412873 ACTAGCACAA
* * *
97412883 AGCCTGCGGGACTTTAGGCCCGGATAT-CTTCCAGCACGT
1 AGCCTGCGGGACCTCAAGCCCGGATATGCTTCCAGCACGT
* * *
97412922 AGCCTG-TGGACCTCAAGTCCGGATATGTTTCCAGCACGT
1 AGCCTGCGGGACCTCAAGCCCGGATATGCTTCCAGCACGT
* * * * *
97412961 AGCTTGC-GGACCTCAAGTCCGGATATGTTTCCAACAAGT
1 AGCCTGCGGGACCTCAAGCCCGGATATGCTTCCAGCACGT
* * *
97413000 AGCCTGC-GGAACTCAAGTCCGGATATGTTTCCA
1 AGCCTGCGGGACCTCAAGCCCGGATATGCTTCCA
97413033 AATATCATGC
Statistics
Matches: 98, Mismatches: 11, Indels: 4
0.87 0.10 0.04
Matches are distributed among these distances:
38 15 0.15
39 83 0.85
ACGTcount: A:0.22, C:0.28, G:0.25, T:0.25
Consensus pattern (40 bp):
AGCCTGCGGGACCTCAAGCCCGGATATGCTTCCAGCACGT
Found at i:97413033 original size:39 final size:39
Alignment explanation
Indices: 97412902--97413033 Score: 194
Period size: 39 Copynumber: 3.4 Consensus size: 39
97412892 GACTTTAGGC
* * *
97412902 CCGGATAT-CTTCCAGCACGTAGCCTGTGGACCTCAAGT
1 CCGGATATGTTTCCAACACGTAGCCTGCGGACCTCAAGT
* *
97412940 CCGGATATGTTTCCAGCACGTAGCTTGCGGACCTCAAGT
1 CCGGATATGTTTCCAACACGTAGCCTGCGGACCTCAAGT
* *
97412979 CCGGATATGTTTCCAACAAGTAGCCTGCGGAACTCAAGT
1 CCGGATATGTTTCCAACACGTAGCCTGCGGACCTCAAGT
97413018 CCGGATATGTTTCCAA
1 CCGGATATGTTTCCAA
97413034 ATATCATGCA
Statistics
Matches: 86, Mismatches: 7, Indels: 1
0.91 0.07 0.01
Matches are distributed among these distances:
38 8 0.09
39 78 0.91
ACGTcount: A:0.23, C:0.28, G:0.23, T:0.25
Consensus pattern (39 bp):
CCGGATATGTTTCCAACACGTAGCCTGCGGACCTCAAGT
Found at i:97415172 original size:38 final size:38
Alignment explanation
Indices: 97415116--97415202 Score: 156
Period size: 38 Copynumber: 2.3 Consensus size: 38
97415106 AACTTTAGGC
* *
97415116 CCGGATATATTCCTGCACGTAGCCTGCGGACCTCAAGT
1 CCGGATATGTTCCAGCACGTAGCCTGCGGACCTCAAGT
97415154 CCGGATATGTTCCAGCACGTAGCCTGCGGACCTCAAGT
1 CCGGATATGTTCCAGCACGTAGCCTGCGGACCTCAAGT
97415192 CCGGATATGTT
1 CCGGATATGTT
97415203 TCCAAATATC
Statistics
Matches: 47, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
38 47 1.00
ACGTcount: A:0.21, C:0.30, G:0.25, T:0.24
Consensus pattern (38 bp):
CCGGATATGTTCCAGCACGTAGCCTGCGGACCTCAAGT
Found at i:97418117 original size:21 final size:20
Alignment explanation
Indices: 97418083--97418127 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 20
97418073 ATTAGAATGT
97418083 AAAA-ATTAAATTAAAA-ACA
1 AAAATATTAAATTAAAATA-A
97418102 AAAATATTAGAATTAAAATAA
1 AAAATATTA-AATTAAAATAA
97418123 AAAAT
1 AAAAT
97418128 GGATATATTA
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
19 4 0.17
20 4 0.17
21 14 0.61
22 1 0.04
ACGTcount: A:0.71, C:0.02, G:0.02, T:0.24
Consensus pattern (20 bp):
AAAATATTAAATTAAAATAA
Found at i:97419680 original size:12 final size:13
Alignment explanation
Indices: 97419641--97419681 Score: 59
Period size: 12 Copynumber: 3.3 Consensus size: 13
97419631 ATTAATTGCT
*
97419641 ATAAGAAAATCTA
1 ATAATAAAATCTA
97419654 ATAAT-AAATCTA
1 ATAATAAAATCTA
97419666 ATAATAAAATC-A
1 ATAATAAAATCTA
97419678 ATAA
1 ATAA
97419682 CAATGATCAC
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
12 17 0.65
13 9 0.35
ACGTcount: A:0.63, C:0.07, G:0.02, T:0.27
Consensus pattern (13 bp):
ATAATAAAATCTA
Found at i:97428956 original size:38 final size:38
Alignment explanation
Indices: 97428905--97428981 Score: 145
Period size: 38 Copynumber: 2.0 Consensus size: 38
97428895 CTTGAGCCTA
97428905 ACAAGCCATTCATTGATTTTCCCTCAATATTAACCCAT
1 ACAAGCCATTCATTGATTTTCCCTCAATATTAACCCAT
*
97428943 ACAAGCTATTCATTGATTTTCCCTCAATATTAACCCAT
1 ACAAGCCATTCATTGATTTTCCCTCAATATTAACCCAT
97428981 A
1 A
97428982 ACCCATTATT
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
38 38 1.00
ACGTcount: A:0.32, C:0.27, G:0.05, T:0.35
Consensus pattern (38 bp):
ACAAGCCATTCATTGATTTTCCCTCAATATTAACCCAT
Found at i:97430828 original size:19 final size:19
Alignment explanation
Indices: 97430804--97430843 Score: 80
Period size: 19 Copynumber: 2.1 Consensus size: 19
97430794 TAGTTTAGTT
97430804 AATTCATTTAGATTAAACA
1 AATTCATTTAGATTAAACA
97430823 AATTCATTTAGATTAAACA
1 AATTCATTTAGATTAAACA
97430842 AA
1 AA
97430844 CCCCTTTATT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.50, C:0.10, G:0.05, T:0.35
Consensus pattern (19 bp):
AATTCATTTAGATTAAACA
Found at i:97430851 original size:19 final size:19
Alignment explanation
Indices: 97430808--97430851 Score: 61
Period size: 19 Copynumber: 2.3 Consensus size: 19
97430798 TTAGTTAATT
**
97430808 CATTTAGATTAAACAAATT
1 CATTTAGATTAAACAAACC
97430827 CATTTAGATTAAACAAACC
1 CATTTAGATTAAACAAACC
*
97430846 CCTTTA
1 CATTTA
97430852 TTTTTTAGGC
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
19 22 1.00
ACGTcount: A:0.43, C:0.18, G:0.05, T:0.34
Consensus pattern (19 bp):
CATTTAGATTAAACAAACC
Found at i:97436206 original size:9 final size:9
Alignment explanation
Indices: 97436194--97436218 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
97436184 GAATAATTGC
97436194 TTTAGTTAT
1 TTTAGTTAT
97436203 TTTAGTTAT
1 TTTAGTTAT
97436212 TTTAGTT
1 TTTAGTT
97436219 TTGTTATCTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.20, C:0.00, G:0.12, T:0.68
Consensus pattern (9 bp):
TTTAGTTAT
Found at i:97440941 original size:24 final size:24
Alignment explanation
Indices: 97440913--97440963 Score: 102
Period size: 24 Copynumber: 2.1 Consensus size: 24
97440903 CAATCACATT
97440913 CAATATGTACTTAAATCAAGCATA
1 CAATATGTACTTAAATCAAGCATA
97440937 CAATATGTACTTAAATCAAGCATA
1 CAATATGTACTTAAATCAAGCATA
97440961 CAA
1 CAA
97440964 GACTCTAATC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 27 1.00
ACGTcount: A:0.47, C:0.18, G:0.08, T:0.27
Consensus pattern (24 bp):
CAATATGTACTTAAATCAAGCATA
Found at i:97444324 original size:19 final size:18
Alignment explanation
Indices: 97444252--97444330 Score: 104
Period size: 18 Copynumber: 4.3 Consensus size: 18
97444242 TGTGGGTAGT
*
97444252 CCGTGTGGTCACACATGC
1 CCGTGTGGTCACACACGC
*
97444270 CCGTGCGGTCACACACGC
1 CCGTGTGGTCACACACGC
*
97444288 CCGTGCGGTCACACACGC
1 CCGTGTGGTCACACACGC
* *
97444306 CCGTGTGGCTTAGACACGC
1 CCGTGTGG-TCACACACGC
97444325 CCGTGT
1 CCGTGT
97444331 CCTCAGCGCG
Statistics
Matches: 55, Mismatches: 5, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
18 41 0.75
19 14 0.25
ACGTcount: A:0.15, C:0.38, G:0.29, T:0.18
Consensus pattern (18 bp):
CCGTGTGGTCACACACGC
Found at i:97452877 original size:43 final size:42
Alignment explanation
Indices: 97452842--97452975 Score: 123
Period size: 42 Copynumber: 3.1 Consensus size: 42
97452832 TCTTATATGT
97452842 AATCAAATATCGATGCCACTGTCCTAAACAGGGTCTTACACGA
1 AATCAAATA-CGATGCCACTGTCCTAAACAGGGTCTTACACGA
* * * *
97452885 AATCAAATACGATGCCGA-TGTCCCAGACATGGTCTTACACATA
1 AATCAAATACGATGCC-ACTGTCCTAAACAGGGTCTTACAC-GA
* *
97452928 AATCTCAAAT-CGATGCCAAC-GTCTTAAAC-GTGGTCTTACACAA
1 AA--TCAAATACGATGCC-ACTGTCCTAAACAG-GGTCTTACACGA
97452971 AATCA
1 AATCA
97452976 CATATCAGAA
Statistics
Matches: 75, Mismatches: 10, Indels: 14
0.76 0.10 0.14
Matches are distributed among these distances:
41 3 0.04
42 26 0.35
43 16 0.21
44 24 0.32
45 6 0.08
ACGTcount: A:0.36, C:0.25, G:0.15, T:0.24
Consensus pattern (42 bp):
AATCAAATACGATGCCACTGTCCTAAACAGGGTCTTACACGA
Found at i:97452919 original size:42 final size:43
Alignment explanation
Indices: 97452824--97452981 Score: 126
Period size: 43 Copynumber: 3.7 Consensus size: 43
97452814 CCAGCATCCT
* * * *
97452824 AGACATGGTCTTATATGTAATCAAATATCGATGCCACTGTCCT
1 AGACATGGTCTTACACGAAATCAAATATCGATGCCACTGTCCC
* *
97452867 AAACAGGGTCTTACACGAAATCAAATA-CGATGCCGA-TGTCCC
1 AGACATGGTCTTACACGAAATCAAATATCGATGCC-ACTGTCCC
* * **
97452909 AGACATGGTCTTACACATAAATCTCAA-ATCGATGCCAAC-GTCTT
1 AGACATGGTCTTACAC-GAAATC-AAATATCGATGCC-ACTGTCCC
* * * *
97452953 AAACGTGGTCTTACACAAAATCACATATC
1 AGACATGGTCTTACACGAAATCAAATATC
97452982 AGAATCCTAT
Statistics
Matches: 91, Mismatches: 18, Indels: 12
0.75 0.15 0.10
Matches are distributed among these distances:
42 27 0.30
43 37 0.41
44 27 0.30
ACGTcount: A:0.35, C:0.24, G:0.15, T:0.26
Consensus pattern (43 bp):
AGACATGGTCTTACACGAAATCAAATATCGATGCCACTGTCCC
Found at i:97455178 original size:49 final size:49
Alignment explanation
Indices: 97455108--97455261 Score: 236
Period size: 49 Copynumber: 3.0 Consensus size: 49
97455098 TGTCTTTGTC
97455108 ATATAGATTATGTAAAATATAAACTTTGAATGAGTATTAAAGGTTGTAT
1 ATATAGATTATGTAAAATATAAACTTTGAATGAGTATTAAAGGTTGTAT
* * *
97455157 ATATAGATTATGTAAAATATAAACTTTGAATGAGTACTAAGGTTAATGTTGTGT
1 ATATAGATTATGTAAAATATAAACTTTGAATGAGTA-T----TAAAGGTTGTAT
97455211 ATATAGATTATGTAAAATATAAACTTTGAATGAGTATTAAAGGTTGTAT
1 ATATAGATTATGTAAAATATAAACTTTGAATGAGTATTAAAGGTTGTAT
97455260 AT
1 AT
97455262 GAATTCGGCC
Statistics
Matches: 94, Mismatches: 6, Indels: 10
0.85 0.05 0.09
Matches are distributed among these distances:
49 47 0.50
50 1 0.01
53 1 0.01
54 45 0.48
ACGTcount: A:0.42, C:0.03, G:0.17, T:0.39
Consensus pattern (49 bp):
ATATAGATTATGTAAAATATAAACTTTGAATGAGTATTAAAGGTTGTAT
Found at i:97455232 original size:54 final size:53
Alignment explanation
Indices: 97455108--97455247 Score: 216
Period size: 54 Copynumber: 2.7 Consensus size: 53
97455098 TGTCTTTGTC
*
97455108 ATATAGATTATGTAAAATATAAACTTTGAATGAGTAT----TAAAGGTTGTAT
1 ATATAGATTATGTAAAATATAAACTTTGAATGAGTATAAGGTTAAGGTTGTAT
* *
97455157 ATATAGATTATGTAAAATATAAACTTTGAATGAGTACTAAGGTTAATGTTGTGT
1 ATATAGATTATGTAAAATATAAACTTTGAATGAGTA-TAAGGTTAAGGTTGTAT
97455211 ATATAGATTATGTAAAATATAAACTTTGAATGAGTAT
1 ATATAGATTATGTAAAATATAAACTTTGAATGAGTAT
97455248 TAAAGGTTGT
Statistics
Matches: 83, Mismatches: 3, Indels: 6
0.90 0.03 0.07
Matches are distributed among these distances:
49 36 0.43
50 1 0.01
53 1 0.01
54 45 0.54
ACGTcount: A:0.42, C:0.03, G:0.16, T:0.39
Consensus pattern (53 bp):
ATATAGATTATGTAAAATATAAACTTTGAATGAGTATAAGGTTAAGGTTGTAT
Found at i:97456977 original size:45 final size:45
Alignment explanation
Indices: 97456913--97457089 Score: 220
Period size: 45 Copynumber: 4.0 Consensus size: 45
97456903 ATTATCGTAC
97456913 GACACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGA
1 GACACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGA
* *
97456958 GACACTATTTGGGCCTTTGAGCCTAGCAGGCTATAATGCCAGTGA
1 GACACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGA
* *
97457003 GATACTATTCGGG-CTTTCGAGCCTAACAGGCTATAATGCCGGTGA
1 GACACTATTCGGGCCTTT-GAGCCTAGCAGGCTATAATGCCGGTGA
** * * *
97457048 -A-AGGATATCGGGCC-TTGGGCCTAGCAGGCGA-AATGCCAGTGA
1 GACACTAT-TCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGA
97457090 ATGAATTTGG
Statistics
Matches: 117, Mismatches: 12, Indels: 9
0.85 0.09 0.07
Matches are distributed among these distances:
42 10 0.09
43 15 0.13
44 12 0.10
45 80 0.68
ACGTcount: A:0.24, C:0.23, G:0.29, T:0.24
Consensus pattern (45 bp):
GACACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGA
Found at i:97462394 original size:40 final size:39
Alignment explanation
Indices: 97462340--97462416 Score: 109
Period size: 40 Copynumber: 1.9 Consensus size: 39
97462330 CGACTTATCG
**
97462340 GCTAAAATGGCACTTAGTGTGCGGTTTGAAATAGCTTCA
1 GCTAAAATGGCACTTAGTGTGCAATTTGAAATAGCTTCA
* *
97462379 GCTAAAAGTGGCACTTGGTGTGCAATTTGAGATAGCTT
1 GCTAAAA-TGGCACTTAGTGTGCAATTTGAAATAGCTT
97462417 TGGCTATATA
Statistics
Matches: 33, Mismatches: 4, Indels: 1
0.87 0.11 0.03
Matches are distributed among these distances:
39 7 0.21
40 26 0.79
ACGTcount: A:0.27, C:0.14, G:0.27, T:0.31
Consensus pattern (39 bp):
GCTAAAATGGCACTTAGTGTGCAATTTGAAATAGCTTCA
Found at i:97463219 original size:15 final size:15
Alignment explanation
Indices: 97463199--97463228 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
97463189 TATATGTGAG
97463199 TCTAGTTTCAAGGAA
1 TCTAGTTTCAAGGAA
97463214 TCTAGTTTCAAGGAA
1 TCTAGTTTCAAGGAA
97463229 AATTAGCAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.33, C:0.13, G:0.20, T:0.33
Consensus pattern (15 bp):
TCTAGTTTCAAGGAA
Found at i:97468456 original size:6 final size:6
Alignment explanation
Indices: 97468441--97468492 Score: 86
Period size: 6 Copynumber: 8.7 Consensus size: 6
97468431 ATTGCAAAAT
* *
97468441 TATATA TATATG TATATG TATATG TATATG TATATG TATATG TATATA
1 TATATG TATATG TATATG TATATG TATATG TATATG TATATG TATATG
97468489 TATA
1 TATA
97468493 CTAGCTGATG
Statistics
Matches: 44, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
6 44 1.00
ACGTcount: A:0.38, C:0.00, G:0.12, T:0.50
Consensus pattern (6 bp):
TATATG
Found at i:97475352 original size:66 final size:70
Alignment explanation
Indices: 97475223--97475352 Score: 160
Period size: 66 Copynumber: 1.9 Consensus size: 70
97475213 GGGATGTATC
* *
97475223 CCATGTAGACAAAAGAGCTACGGGAGAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAAAGAGCTAC-GGAGAGATAAATGTAGCTAGGTCGCATGAGTGATACCAAGTGA
97475288 AGAACG
65 AGAACG
* * * * *
97475294 CCATGTAGGCAAGAGAGCTAC-GAGA-A-AAAT-TGGCTAGGTCGCATGAGTGGTACTAAGTG
1 CCATGTAGACAAAAGAGCTACGGAGAGATAAATGTAGCTAGGTCGCATGAGTGATACCAAGTG
97475353 TTCACCATGT
Statistics
Matches: 52, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
66 24 0.46
67 4 0.08
68 1 0.02
69 4 0.08
71 19 0.37
ACGTcount: A:0.34, C:0.16, G:0.31, T:0.19
Consensus pattern (70 bp):
CCATGTAGACAAAAGAGCTACGGAGAGATAAATGTAGCTAGGTCGCATGAGTGATACCAAGTGAA
GAACG
Found at i:97475850 original size:43 final size:43
Alignment explanation
Indices: 97475730--97475875 Score: 186
Period size: 43 Copynumber: 3.4 Consensus size: 43
97475720 TGGTGCTATT
* *
97475730 TAAAAAATGCCGCTAAAGACTAGGACTTTTAGCGGTGCTTTTC
1 TAAAAAACGCCGCTAAAGACTAGGACTTTTAGCGGCGCTTTTC
* * * *
97475773 CAAACAAACGCCGCTAAAGACCAAGACTTTTAGCGGCGCTTTTT
1 TAAA-AAACGCCGCTAAAGACTAGGACTTTTAGCGGCGCTTTTC
* * *
97475817 TAAAAAACGCCGCTAAA-AATAGGGACCTCTAGCGGCGCTTTTC
1 TAAAAAACGCCGCTAAAGACTA-GGACTTTTAGCGGCGCTTTTC
97475860 TAAAAAACGCCGCTAA
1 TAAAAAACGCCGCTAA
97475876 TTTGCCCAGT
Statistics
Matches: 88, Mismatches: 13, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
42 2 0.02
43 49 0.56
44 37 0.42
ACGTcount: A:0.34, C:0.24, G:0.19, T:0.23
Consensus pattern (43 bp):
TAAAAAACGCCGCTAAAGACTAGGACTTTTAGCGGCGCTTTTC
Found at i:97476199 original size:21 final size:21
Alignment explanation
Indices: 97476173--97476213 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
97476163 GTTCTGCTCC
*
97476173 GCCTCCCTCGCTGCTACCTCT
1 GCCTCCCGCGCTGCTACCTCT
*
97476194 GCCTCCCGCGCTGCTGCCTC
1 GCCTCCCGCGCTGCTACCTC
97476214 CGCTCTAAGT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.02, C:0.54, G:0.20, T:0.24
Consensus pattern (21 bp):
GCCTCCCGCGCTGCTACCTCT
Found at i:97480661 original size:46 final size:44
Alignment explanation
Indices: 97480611--97480782 Score: 166
Period size: 46 Copynumber: 3.8 Consensus size: 44
97480601 TGAGCATCCA
97480611 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCG
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG-GAA-GTCCG
*** * *
97480657 AACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAGGCA-TCCG
1 AACTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-GGAAGTCCG
* *
97480704 AGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAACGCCCG
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG-GAA-GTCCG
* * * *
97480750 AGCTCATTGAGTTCATTCCGAGTTCACTTATGG
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
97480783 GCGGGTTACA
Statistics
Matches: 104, Mismatches: 15, Indels: 14
0.78 0.11 0.11
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 1 0.01
46 62 0.60
47 32 0.31
48 1 0.01
49 3 0.03
50 1 0.01
ACGTcount: A:0.22, C:0.20, G:0.28, T:0.30
Consensus pattern (44 bp):
AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGGAAGTCCG
Found at i:97480770 original size:93 final size:93
Alignment explanation
Indices: 97480604--97480774 Score: 261
Period size: 93 Copynumber: 1.8 Consensus size: 93
97480594 GGATGGTTGA
* * *
97480604 GCATCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCATTGAGT
*
97480669 TGAGTCCGAGTTCGAGAGATGTAACTAG
66 TCAGTCCGAGTTCGAGAGATGTAACTAG
* * * *
97480697 GCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAACGCCCGAGCTCATTGAGT
1 GCATCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCATTGAGT
*
97480762 TCATTCCGAGTTC
66 TCAGTCCGAGTTC
97480775 ACTTATGGGC
Statistics
Matches: 69, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
93 69 1.00
ACGTcount: A:0.22, C:0.22, G:0.27, T:0.29
Consensus pattern (93 bp):
GCATCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCATTGAGT
TCAGTCCGAGTTCGAGAGATGTAACTAG
Found at i:97484535 original size:9 final size:9
Alignment explanation
Indices: 97484521--97484744 Score: 178
Period size: 9 Copynumber: 23.6 Consensus size: 9
97484511 ATGTATTAGT
97484521 TAAGTTATG
1 TAAGTTATG
97484530 TAAGTTGTTATG
1 TAA---GTTATG
*
97484542 TACGTTATG
1 TAAGTTATG
* *
97484551 TGAGTTTTG
1 TAAGTTATG
*
97484560 TAAATTATG
1 TAAGTTATG
97484569 TAAGTTATG
1 TAAGTTATG
*
97484578 TGAGTTATG
1 TAAGTTATG
97484587 TAAGTTGTTATG
1 TAA---GTTATG
*
97484599 TACGTTATG
1 TAAGTTATG
* *
97484608 TGAGTTTTG
1 TAAGTTATG
*
97484617 TAAATTATG
1 TAAGTTATG
97484626 TAAGTTATG
1 TAAGTTATG
*
97484635 TGAGTTATG
1 TAAGTTATG
97484644 TAAGTTGTTATG
1 TAA---GTTATG
*
97484656 TAAATTATG
1 TAAGTTATG
97484665 TAAGTTATG
1 TAAGTTATG
*
97484674 TGAGTTATG
1 TAAGTTATG
97484683 TAAGTTGTTATG
1 TAA---GTTATG
* *
97484695 TAAATTACG
1 TAAGTTATG
*
97484704 TAAGTTATA
1 TAAGTTATG
*
97484713 TGAGTTATG
1 TAAGTTATG
97484722 TAAGTTATG
1 TAAGTTATG
* *
97484731 TAATTTATT
1 TAAGTTATG
97484740 TAAGT
1 TAAGT
97484745 AATGATCAAT
Statistics
Matches: 168, Mismatches: 35, Indels: 24
0.74 0.15 0.11
Matches are distributed among these distances:
9 134 0.80
12 34 0.20
ACGTcount: A:0.29, C:0.01, G:0.22, T:0.47
Consensus pattern (9 bp):
TAAGTTATG
Found at i:97484611 original size:57 final size:57
Alignment explanation
Indices: 97484523--97484688 Score: 278
Period size: 57 Copynumber: 2.9 Consensus size: 57
97484513 GTATTAGTTA
97484523 AGTTATGTAAGTTGTTATGTACGTTATGTGAGTTTTGTAAATTATGTAAGTTATGTG
1 AGTTATGTAAGTTGTTATGTACGTTATGTGAGTTTTGTAAATTATGTAAGTTATGTG
97484580 AGTTATGTAAGTTGTTATGTACGTTATGTGAGTTTTGTAAATTATGTAAGTTATGTG
1 AGTTATGTAAGTTGTTATGTACGTTATGTGAGTTTTGTAAATTATGTAAGTTATGTG
** * * * *
97484637 AGTTATGTAAGTTGTTATGTAAATTATGTAAGTTATGTGAGTTATGTAAGTT
1 AGTTATGTAAGTTGTTATGTACGTTATGTGAGTTTTGTAAATTATGTAAGTT
97484689 GTTATGTAAA
Statistics
Matches: 103, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
57 103 1.00
ACGTcount: A:0.28, C:0.01, G:0.24, T:0.47
Consensus pattern (57 bp):
AGTTATGTAAGTTGTTATGTACGTTATGTGAGTTTTGTAAATTATGTAAGTTATGTG
Found at i:97484658 original size:39 final size:39
Alignment explanation
Indices: 97484523--97484727 Score: 226
Period size: 39 Copynumber: 5.3 Consensus size: 39
97484513 GTATTAGTTA
** * * *
97484523 AGTTATGTAAGTTGTTATGTACGTTATGTGAGTTTTGTA
1 AGTTATGTAAGTTGTTATGTAAATTATGTAAGTTATGTG
* * *
97484562 AATTATGTAA---GTTATGTGAGTTATGTAAGTTGTTATGT-
1 AGTTATGTAAGTTGTTATGTAAATTATGTAA---GTTATGTG
*
97484600 ACGTTATGTGAG-T-TT-TGTAAATTATGTAAGTTATGTG
1 A-GTTATGTAAGTTGTTATGTAAATTATGTAAGTTATGTG
97484637 AGTTATGTAAGTTGTTATGTAAATTATGTAAGTTATGTG
1 AGTTATGTAAGTTGTTATGTAAATTATGTAAGTTATGTG
* *
97484676 AGTTATGTAAGTTGTTATGTAAATTACGTAAGTTATATG
1 AGTTATGTAAGTTGTTATGTAAATTATGTAAGTTATGTG
97484715 AGTTATGTAAGTT
1 AGTTATGTAAGTT
97484728 ATGTAATTTA
Statistics
Matches: 144, Mismatches: 12, Indels: 20
0.82 0.07 0.11
Matches are distributed among these distances:
36 31 0.22
37 2 0.01
38 3 0.02
39 106 0.74
40 2 0.01
ACGTcount: A:0.29, C:0.01, G:0.23, T:0.46
Consensus pattern (39 bp):
AGTTATGTAAGTTGTTATGTAAATTATGTAAGTTATGTG
Found at i:97485348 original size:241 final size:241
Alignment explanation
Indices: 97484925--97485411 Score: 902
Period size: 241 Copynumber: 2.0 Consensus size: 241
97484915 TTAAGGTTAT
97484925 ATAAATATTCAATAGTAAATGAGATCGATAGAACTTTTTCCAAGTCTTTTTGAATTTTTTAAGAT
1 ATAAATATTCAATAGTAAATGAGATCGATAGAACTTTTTCCAAGTCTTTTTGAATTTTTTAAGAT
*
97484990 TCATCATATGTGGCGTTGTTACATCTAGGGAGGATCCATTATATCTTACAACTCGATATAAGGCA
66 TCATCATATGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTACAACTCGATATAAGGCA
*
97485055 ACCCGTCAGGTTTCTAGCCTATATACTTTGAATCTTTAAAATATTTAAAATAAGGTTGGAGAGAA
131 ACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAAAATAAGGTTGGAGAGAA
*
97485120 GGTCAGCTATTGTTGTAATTTTAATGGATAAGCAAGCTACATGGTA
196 GGTCAGCTATTGTTGTAATTTTAATGGACAAGCAAGCTACATGGTA
* *
97485166 ATAAATATTCAATAGTAAATGAGCTCGATAGAACTTTTTTCAAGTCTTTTTGAATTTTTTAAGAT
1 ATAAATATTCAATAGTAAATGAGATCGATAGAACTTTTTCCAAGTCTTTTTGAATTTTTTAAGAT
* *
97485231 TCATCATATGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTACAGCTTGATATAAGGCA
66 TCATCATATGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTACAACTCGATATAAGGCA
*
97485296 ACCCGTCAGTTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAAAATAAGGTTGGAGAGAA
131 ACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAAAATAAGGTTGGAGAGAA
97485361 GGTCAGCTATTGTTGTAATTTTAATGGACAAGCAAGCTACATGGTA
196 GGTCAGCTATTGTTGTAATTTTAATGGACAAGCAAGCTACATGGTA
97485407 ATAAA
1 ATAAA
97485412 ATTAATTCAT
Statistics
Matches: 238, Mismatches: 8, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
241 238 1.00
ACGTcount: A:0.33, C:0.14, G:0.18, T:0.36
Consensus pattern (241 bp):
ATAAATATTCAATAGTAAATGAGATCGATAGAACTTTTTCCAAGTCTTTTTGAATTTTTTAAGAT
TCATCATATGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTACAACTCGATATAAGGCA
ACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAAAATAAGGTTGGAGAGAA
GGTCAGCTATTGTTGTAATTTTAATGGACAAGCAAGCTACATGGTA
Found at i:97490626 original size:28 final size:27
Alignment explanation
Indices: 97490574--97490626 Score: 63
Period size: 27 Copynumber: 1.9 Consensus size: 27
97490564 GGTCTCTCTA
* *
97490574 ATATATTTAAATTTTTGATTTATTTGC
1 ATATATTTAAATTTTTAATTCATTTGC
97490601 ATATACTTT-AATTTTTAATATCATTT
1 ATATA-TTTAAATTTTTAAT-TCATTT
97490627 AGTCTATATA
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
27 14 0.64
28 8 0.36
ACGTcount: A:0.32, C:0.06, G:0.04, T:0.58
Consensus pattern (27 bp):
ATATATTTAAATTTTTAATTCATTTGC
Found at i:97490812 original size:14 final size:14
Alignment explanation
Indices: 97490793--97490827 Score: 61
Period size: 14 Copynumber: 2.5 Consensus size: 14
97490783 CATTAATATC
97490793 TATATATATATCAA
1 TATATATATATCAA
*
97490807 TATATATATATCCA
1 TATATATATATCAA
97490821 TATATAT
1 TATATAT
97490828 GAAATTTATT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.46, C:0.09, G:0.00, T:0.46
Consensus pattern (14 bp):
TATATATATATCAA
Found at i:97490823 original size:12 final size:12
Alignment explanation
Indices: 97490788--97490827 Score: 53
Period size: 12 Copynumber: 3.2 Consensus size: 12
97490778 TTTTACATTA
97490788 ATATCTATATAT
1 ATATCTATATAT
97490800 ATATCAATATATAT
1 ATATC--TATATAT
*
97490814 ATATCCATATAT
1 ATATCTATATAT
97490826 AT
1 AT
97490828 GAAATTTATT
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
12 13 0.52
14 12 0.48
ACGTcount: A:0.45, C:0.10, G:0.00, T:0.45
Consensus pattern (12 bp):
ATATCTATATAT
Found at i:97498450 original size:22 final size:23
Alignment explanation
Indices: 97498402--97498451 Score: 59
Period size: 22 Copynumber: 2.2 Consensus size: 23
97498392 ATGGTTAATG
*
97498402 TTTTTAAGGTTAGGGGTTTTAGG
1 TTTTTAAGGTTAGGGGTTTTAGA
*
97498425 TTTTTAGAGTTTA-GGG-TTTAGA
1 TTTTTA-AGGTTAGGGGTTTTAGA
97498447 TTTTT
1 TTTTT
97498452 TAAAGAAAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
22 10 0.42
23 9 0.38
24 5 0.21
ACGTcount: A:0.18, C:0.00, G:0.28, T:0.54
Consensus pattern (23 bp):
TTTTTAAGGTTAGGGGTTTTAGA
Found at i:97498861 original size:127 final size:127
Alignment explanation
Indices: 97498630--97499148 Score: 762
Period size: 126 Copynumber: 4.1 Consensus size: 127
97498620 CAATAAAAAA
* * ** *
97498630 TTCTACAGTAGTTTTTGAAACAATAAAATTGAGAAGATGTTTCTGAACAAATAGTGCCAAAAACG
1 TTCTACAGTAGTTTCTGAAAAAATAATTTTGAGAAGATGTTTCTGAACAAATAGTGTCAAAAACG
*
97498695 CTTCAAGCAGGATGCACTGTCAGCAAAAGTATTAAAAAAAAGCTTC-CACGTGGACGCG-TTT
66 CTTCAAGCAGGATGCACTGTCAGCAAAAGTACT-AAAAAAAGCTTCTCACGTGGACGCGTTTT
* * *
97498756 TCCTATAGTAGTTTCTGAAAAAAATAATTTTGAGAAGATGTTTCTGAACAAATAGTGTCAAAAAT
1 TTCTACAGTAGTTTCTG-AAAAAATAATTTTGAGAAGATGTTTCTGAACAAATAGTGTCAAAAAC
* * * *
97498821 ACTTCAAGCAGGATGCACTGTCAGCAAAATTACTAAAAAAAGC-TCCCACGTGGACGTGTTTT
65 GCTTCAAGCAGGATGCACTGTCAGCAAAAGTACTAAAAAAAGCTTCTCACGTGGACGCGTTTT
*
97498883 TTCTACAGTAGTTTCTAAAAAAATAATTTTGAGAAGATGTTTCTGAACAAATAGTGTCAAAAACG
1 TTCTACAGTAGTTTCTGAAAAAATAATTTTGAGAAGATGTTTCTGAACAAATAGTGTCAAAAACG
* *
97498948 CTTCAAGCAGGATGCACTGTCAGCAAAAGTACTGAAAAAAG-TTCTTACGTGGACGCGTTTT
66 CTTCAAGCAGGATGCACTGTCAGCAAAAGTACTAAAAAAAGCTTCTCACGTGGACGCGTTTT
* * *
97499009 TTCTACAGTAGTTTCTGAAAGAATAATTTTGAGAAGATATATCTGAACAAATAGTGTCAAAAACG
1 TTCTACAGTAGTTTCTGAAAAAATAATTTTGAGAAGATGTTTCTGAACAAATAGTGTCAAAAACG
* * *
97499074 CTTCAAGCAGGATGAACTCTCAGCAAAATTACTGAAAAAAAGC-TCTCACGTGGACGC-TCTTT
66 CTTCAAGCAGGATGCACTGTCAGCAAAAGTACT-AAAAAAAGCTTCTCACGTGGACGCGT-TTT
97499136 TTCTACAGTAGTT
1 TTCTACAGTAGTT
97499149 CCCATTTGGC
Statistics
Matches: 355, Mismatches: 31, Indels: 13
0.89 0.08 0.03
Matches are distributed among these distances:
125 2 0.01
126 227 0.64
127 126 0.35
ACGTcount: A:0.37, C:0.16, G:0.18, T:0.29
Consensus pattern (127 bp):
TTCTACAGTAGTTTCTGAAAAAATAATTTTGAGAAGATGTTTCTGAACAAATAGTGTCAAAAACG
CTTCAAGCAGGATGCACTGTCAGCAAAAGTACTAAAAAAAGCTTCTCACGTGGACGCGTTTT
Found at i:97499114 original size:253 final size:253
Alignment explanation
Indices: 97498630--97499148 Score: 794
Period size: 253 Copynumber: 2.1 Consensus size: 253
97498620 CAATAAAAAA
* * *
97498630 TTCTACAGTAGTTTTTGAAACAATAAAATTGAGAAGATGTTTCTGAACAAATAGTGCCAAAAACG
1 TTCTACAGTAGTTTCTAAAAAAATAAAATTGAGAAGATGTTTCTGAACAAATAGTGCCAAAAACG
*
97498695 CTTCAAGCAGGATGCACTGTCAGCAAAAGTATTAAAAAAAAGCTTCCACGTGGACGCGTTTTCCT
66 CTTCAAGCAGGATGCACTGTCAGCAAAAGTACTAAAAAAAAGCTTCCACGTGGACGCGTTTTCCT
* * * *
97498760 ATAGTAGTTTCTGAAAAAAATAATTTTGAGAAGATGTTTCTGAACAAATAGTGTCAAAAATACTT
131 ACAGTAGTTTCTGAAAAAAATAATTTTGAGAAGATATATCTGAACAAATAGTGTCAAAAACACTT
* * *
97498825 CAAGCAGGATGCACTGTCAGCAAAATTACTAAAAAAAGCTCCCACGTGGACG-TGTTTT
196 CAAGCAGGATGAACTCTCAGCAAAATTACTAAAAAAAGCTCCCACGTGGACGCT-CTTT
** *
97498883 TTCTACAGTAGTTTCTAAAAAAATAATTTTGAGAAGATGTTTCTGAACAAATAGTGTCAAAAACG
1 TTCTACAGTAGTTTCTAAAAAAATAAAATTGAGAAGATGTTTCTGAACAAATAGTGCCAAAAACG
* * *
97498948 CTTCAAGCAGGATGCACTGTCAGCAAAAGTACT-GAAAAAAG-TTCTTACGTGGACGCGTTTTTT
66 CTTCAAGCAGGATGCACTGTCAGCAAAAGTACTAAAAAAAAGCTTC-CACGTGGACGCG-TTTTC
* *
97499011 CTACAGTAGTTTCTG-AAAGAATAATTTTGAGAAGATATATCTGAACAAATAGTGTCAAAAACGC
129 CTACAGTAGTTTCTGAAAAAAATAATTTTGAGAAGATATATCTGAACAAATAGTGTCAAAAACAC
*
97499075 TTCAAGCAGGATGAACTCTCAGCAAAATTACTGAAAAAAAGCTCTCACGTGGACGCTCTTT
194 TTCAAGCAGGATGAACTCTCAGCAAAATTACT-AAAAAAAGCTCCCACGTGGACGCTCTTT
97499136 TTCTACAGTAGTT
1 TTCTACAGTAGTT
97499149 CCCATTTGGC
Statistics
Matches: 242, Mismatches: 20, Indels: 8
0.90 0.07 0.03
Matches are distributed among these distances:
251 3 0.01
252 92 0.38
253 146 0.60
254 1 0.00
ACGTcount: A:0.37, C:0.16, G:0.18, T:0.29
Consensus pattern (253 bp):
TTCTACAGTAGTTTCTAAAAAAATAAAATTGAGAAGATGTTTCTGAACAAATAGTGCCAAAAACG
CTTCAAGCAGGATGCACTGTCAGCAAAAGTACTAAAAAAAAGCTTCCACGTGGACGCGTTTTCCT
ACAGTAGTTTCTGAAAAAAATAATTTTGAGAAGATATATCTGAACAAATAGTGTCAAAAACACTT
CAAGCAGGATGAACTCTCAGCAAAATTACTAAAAAAAGCTCCCACGTGGACGCTCTTT
Found at i:97501219 original size:40 final size:40
Alignment explanation
Indices: 97501175--97501370 Score: 283
Period size: 40 Copynumber: 4.9 Consensus size: 40
97501165 GGATATAGCT
*
97501175 ACTCGCTCAAATGCCTTCGGGA-TATAGCCCGGTTATAGTA
1 ACTCGCACAAATGCCTTCGGGACT-TAGCCCGGTTATAGTA
* *
97501215 ACTCGCACCAATGCCTTCGGGACTTAGCCCGGATT-TGGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGG-TTATAGTA
*
97501255 ACTCGCACAAATGCCTTCGGGACTTAGCCCGG-AATTAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTA-TAGTA
*
97501295 ACTCGCACAAATGCCTTCGGGACTTAGCCCGG-AATTAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTA-TAGTA
97501335 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTAT
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTAT
97501371 CATCCGAATA
Statistics
Matches: 144, Mismatches: 7, Indels: 10
0.89 0.04 0.06
Matches are distributed among these distances:
40 140 0.97
41 4 0.03
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.24
Consensus pattern (40 bp):
ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGTA
Found at i:97505242 original size:46 final size:45
Alignment explanation
Indices: 97505141--97505302 Score: 168
Period size: 46 Copynumber: 3.5 Consensus size: 45
97505131 TCCCAAGGTA
*
97505141 CCGATGCCATGTCCCAGACATGGTCTTACACTGACTATCATCTCGTAG
1 CCGATGCCATGTCCCAGACAT-GTCTTACACTGACTA-CGTCTCG-AG
* * *
97505189 CCAATG-CATGTCCCAGACATGTCTTACACTGGCTTACGCCTCGAGG
1 CCGATGCCATGTCCCAGACATGTCTTACACTGAC-TACGTCTCGA-G
* * *
97505235 CCGATG-CATGTCCTAGACATGTCTTACACTAGCCCT-CGTCTCAATG
1 CCGATGCCATGTCCCAGACATGTCTTACACT-G-ACTACGTCTCGA-G
97505281 CCGATGCCATGTCCCAGACATG
1 CCGATGCCATGTCCCAGACATG
97505303 GCATTGGCAC
Statistics
Matches: 98, Mismatches: 11, Indels: 11
0.82 0.09 0.09
Matches are distributed among these distances:
45 1 0.01
46 59 0.60
47 32 0.33
48 6 0.06
ACGTcount: A:0.22, C:0.33, G:0.20, T:0.25
Consensus pattern (45 bp):
CCGATGCCATGTCCCAGACATGTCTTACACTGACTACGTCTCGAG
Found at i:97506285 original size:28 final size:28
Alignment explanation
Indices: 97506245--97506309 Score: 112
Period size: 28 Copynumber: 2.3 Consensus size: 28
97506235 CAGGAACTAA
*
97506245 GACATGGGCGTGTTATGGCCGTGTGAGG
1 GACATGGGCGTGTCATGGCCGTGTGAGG
97506273 GACATGGGCGTGTCATGGCCGTGTGAGG
1 GACATGGGCGTGTCATGGCCGTGTGAGG
*
97506301 GACACGGGC
1 GACATGGGC
97506310 CATTGACACG
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
28 35 1.00
ACGTcount: A:0.15, C:0.18, G:0.46, T:0.20
Consensus pattern (28 bp):
GACATGGGCGTGTCATGGCCGTGTGAGG
Done.