Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A06
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 115140250
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2234201 characters in sequence are not A, C, G, or T
File 287 of 345
Found at i:97715422 original size:17 final size:18
Alignment explanation
Indices: 97715389--97715422 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
97715379 TATCTCTTAA
97715389 ATAATTTAAACTATATTG
1 ATAATTTAAACTATATTG
*
97715407 ATAATTTTAA-TATATT
1 ATAATTTAAACTATATT
97715423 AAAATTAATA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.44, C:0.03, G:0.03, T:0.50
Consensus pattern (18 bp):
ATAATTTAAACTATATTG
Found at i:97715563 original size:21 final size:21
Alignment explanation
Indices: 97715501--97715565 Score: 62
Period size: 21 Copynumber: 3.1 Consensus size: 21
97715491 TAATCTAAAC
* *
97715501 CCTT-AACCCATATCCCATAAA
1 CCTTAAACCCATAACCC-TTAA
* *
97715522 CCTTAAACCC-TAAAACTTTAA
1 CCTTAAACCCAT-AACCCTTAA
97715543 CCTTAAACCCATAACCCTTAA
1 CCTTAAACCCATAACCCTTAA
97715564 CC
1 CC
97715566 CATAACCCCT
Statistics
Matches: 35, Mismatches: 6, Indels: 6
0.74 0.13 0.13
Matches are distributed among these distances:
21 27 0.77
22 8 0.23
ACGTcount: A:0.38, C:0.37, G:0.00, T:0.25
Consensus pattern (21 bp):
CCTTAAACCCATAACCCTTAA
Found at i:97715563 original size:57 final size:56
Alignment explanation
Indices: 97715498--97715642 Score: 168
Period size: 57 Copynumber: 2.6 Consensus size: 56
97715488 AATTAATCTA
* *
97715498 AACCCTTAACCCATATCCCATAAACCTTAAA-CCCTAAAACTTTAACCTTAAACCCAT
1 AACCCTTAACCCATATCCCATAAACCTTAAATCCC-AAAACTTAAACCATAAA-CCAT
* * ** *
97715555 AACCCTTAACCCATAACCCCTAAACCTTAAATCCCAACCCTTAAACCATAAACTAT
1 AACCCTTAACCCATATCCCATAAACCTTAAATCCCAAAACTTAAACCATAAACCAT
*
97715611 AATCCCTAAACCCATAAT-CCATAAACCTTAAA
1 AA-CCCTTAACCCAT-ATCCCATAAACCTTAAA
97715643 ATAGTAACTC
Statistics
Matches: 75, Mismatches: 10, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
56 5 0.07
57 66 0.88
58 4 0.05
ACGTcount: A:0.42, C:0.35, G:0.00, T:0.23
Consensus pattern (56 bp):
AACCCTTAACCCATATCCCATAAACCTTAAATCCCAAAACTTAAACCATAAACCAT
Found at i:97715573 original size:14 final size:14
Alignment explanation
Indices: 97715498--97715573 Score: 55
Period size: 14 Copynumber: 5.4 Consensus size: 14
97715488 AATTAATCTA
97715498 AACCCTTAACCCAT
1 AACCCTTAACCCAT
* * * *
97715512 ATCCCATAAACCTT
1 AACCCTTAACCCAT
* * **
97715526 AAACCCTAAAACTTT
1 -AACCCTTAACCCAT
97715541 AA-CCTTAAACCCAT
1 AACCCTT-AACCCAT
97715555 AACCCTTAACCCAT
1 AACCCTTAACCCAT
97715569 AACCC
1 AACCC
97715574 CTAAACCTTA
Statistics
Matches: 47, Mismatches: 12, Indels: 6
0.72 0.18 0.09
Matches are distributed among these distances:
13 3 0.06
14 30 0.64
15 14 0.30
ACGTcount: A:0.39, C:0.38, G:0.00, T:0.22
Consensus pattern (14 bp):
AACCCTTAACCCAT
Found at i:97715642 original size:22 final size:21
Alignment explanation
Indices: 97715593--97715691 Score: 67
Period size: 22 Copynumber: 4.6 Consensus size: 21
97715583 AAATCCCAAC
* *
97715593 CCTTAAACCATAAACTATAAT
1 CCTTAAACCATAAACCATAAA
* *
97715614 CCCTAAACCCATAATCCATAAA
1 CCTTAAA-CCATAAACCATAAA
*
97715636 CCTTAAA--ATAGTAACTCTTAAA
1 CCTTAAACCATA--AAC-CATAAA
* *
97715658 GCTTAAACCCTAAACCATAAA
1 CCTTAAACCATAAACCATAAA
* *
97715679 CCCTAAACTATAA
1 CCTTAAACCATAA
97715692 TGATAATTAA
Statistics
Matches: 58, Mismatches: 14, Indels: 12
0.69 0.17 0.14
Matches are distributed among these distances:
19 3 0.05
21 22 0.38
22 31 0.53
24 2 0.03
ACGTcount: A:0.46, C:0.27, G:0.02, T:0.24
Consensus pattern (21 bp):
CCTTAAACCATAAACCATAAA
Found at i:97715678 original size:14 final size:14
Alignment explanation
Indices: 97715590--97715691 Score: 55
Period size: 14 Copynumber: 7.1 Consensus size: 14
97715580 CTTAAATCCC
97715590 AACCCTTAAACCATA
1 AACCC-TAAACCATA
** * *
97715605 AACTATAATCCCTA
1 AACCCTAAACCATA
*
97715619 AACCCATAATCCATA
1 AACCC-TAAACCATA
*
97715634 AACCTTAAA--ATA
1 AACCCTAAACCATA
* * *
97715646 GTAACTCTTAAAGCTTA
1 --AAC-CCTAAACCATA
97715663 AACCCTAAACCATA
1 AACCCTAAACCATA
*
97715677 AACCCTAAACTATA
1 AACCCTAAACCATA
97715691 A
1 A
97715692 TGATAATTAA
Statistics
Matches: 67, Mismatches: 14, Indels: 13
0.71 0.15 0.14
Matches are distributed among these distances:
12 3 0.04
14 38 0.57
15 24 0.36
17 2 0.03
ACGTcount: A:0.47, C:0.27, G:0.02, T:0.24
Consensus pattern (14 bp):
AACCCTAAACCATA
Found at i:97715685 original size:21 final size:21
Alignment explanation
Indices: 97715518--97715686 Score: 69
Period size: 21 Copynumber: 7.9 Consensus size: 21
97715508 CCATATCCCA
* * *
97715518 TAAACCTTAAACCCTAAAACT
1 TAAACCATAAACCCTAAACCC
* *
97715539 TTAACCTTAAACCC-ATAACCC
1 TAAACCATAAACCCTA-AACCC
* * *
97715560 TTAACCCATAACCCCTAAACCT
1 -TAAACCATAAACCCTAAACCC
* *
97715582 TAAATCC--CAACCCTTAAACCA
1 TAAA-CCATAAACCC-TAAACCC
* *
97715603 TAAACTATAATCCCTAAACCC
1 TAAACCATAAACCCTAAACCC
* * *
97715624 ATAATCCATAAACCTTAAA--A
1 -TAAACCATAAACCCTAAACCC
* * *
97715644 TAGTAACTCTTAAAGCTTAAACCC
1 TA--AAC-CATAAACCCTAAACCC
97715668 TAAACCATAAACCCTAAAC
1 TAAACCATAAACCCTAAAC
97715687 TATAATGATA
Statistics
Matches: 107, Mismatches: 28, Indels: 26
0.66 0.17 0.16
Matches are distributed among these distances:
19 2 0.02
20 6 0.06
21 48 0.45
22 48 0.45
23 1 0.01
24 2 0.02
ACGTcount: A:0.44, C:0.32, G:0.01, T:0.23
Consensus pattern (21 bp):
TAAACCATAAACCCTAAACCC
Found at i:97716174 original size:40 final size:40
Alignment explanation
Indices: 97716113--97716509 Score: 298
Period size: 40 Copynumber: 10.1 Consensus size: 40
97716103 TTTTGCGGAA
* * * *
97716113 TTTTTCAAAAAGCACCACTAATGGTCGACCTATAGCGGCG
1 TTTTTCAAAAAGCGCCGCTAATGCTCGATCTATAGCGGCG
* *
97716153 TTTTTCAGAAAGCGCCGCTAATGGTCGA-CTTATAGCGGCG
1 TTTTTCAAAAAGCGCCGCTAATGCTCGATC-TATAGCGGCG
* * ** *
97716193 TTTCT-AAAAAGCGCCGCTAATGGTTAATCTATAGCGGTG
1 TTTTTCAAAAAGCGCCGCTAATGCTCGATCTATAGCGGCG
* * * *
97716232 TTTTTCTAAAAGCACCGCTAATGC-C-A-CTAAAGC-TC-
1 TTTTTCAAAAAGCGCCGCTAATGCTCGATCTATAGCGGCG
**** * * * * * * * *
97716267 AACAT-AAAACAACGGCG-T-GTGCTTGATTTTTTTGCGGCA
1 TTTTTCAAAA-AGCGCCGCTAATGCTCGA-TCTATAGCGGCG
* * * * *
97716306 TTTTTCAAAAAGCGCCACTAATGGTCGACCTATAGTGGAG
1 TTTTTCAAAAAGCGCCGCTAATGCTCGATCTATAGCGGCG
*
97716346 TTTTT-AAAAAGCGCCGCTAATGCTCGATCTATAGCGGCA
1 TTTTTCAAAAAGCGCCGCTAATGCTCGATCTATAGCGGCG
* *
97716385 TTTTTCAAAAAGTGCCGCTAATGCTCAATCTATAGCGGCG
1 TTTTTCAAAAAGCGCCGCTAATGCTCGATCTATAGCGGCG
* * *
97716425 CTTTTTGAAAAA-TGTCGCTAATGCTCGATCTATAGCGGCG
1 -TTTTTCAAAAAGCGCCGCTAATGCTCGATCTATAGCGGCG
* *
97716465 CTTTTTGAAAAA-TGCCGCTAATGCTCGATCTATAGCGGCG
1 -TTTTTCAAAAAGCGCCGCTAATGCTCGATCTATAGCGGCG
97716505 TTTTT
1 TTTTT
97716510 TATCCAAATG
Statistics
Matches: 281, Mismatches: 61, Indels: 31
0.75 0.16 0.08
Matches are distributed among these distances:
33 3 0.01
34 4 0.01
35 6 0.02
37 9 0.03
38 2 0.01
39 76 0.27
40 166 0.59
41 15 0.05
ACGTcount: A:0.27, C:0.22, G:0.21, T:0.30
Consensus pattern (40 bp):
TTTTTCAAAAAGCGCCGCTAATGCTCGATCTATAGCGGCG
Found at i:97716336 original size:193 final size:195
Alignment explanation
Indices: 97716005--97716436 Score: 586
Period size: 193 Copynumber: 2.2 Consensus size: 195
97715995 CCTTTTTGGT
* * * *
97716005 AAAGCGCCGCTAAAGCTCGATCTATAGTGGCGTTTTTCAAAAAGCGCCGCTAAATGCCACTAAAG
1 AAAGCGCCGCTAATGCTCAATCTATAGCGGCGTTTTTCAAAAAGCACCGCTAAATGCCACTAAAG
* * *
97716070 TTTAACATAAAACGAAGACATTGTGCTTAATTTTTTTGCGGAATTTTTCAAAAAGCACCACTAAT
66 CTCAACATAAAACGAAGACAGTGTGCTTAATTTTTTTGCGGAATTTTTCAAAAAGCACCACTAAT
* * * *
97716135 GGTCGACCTATAGCGGCGTTTTTCAGAAAGCGCCGCTAATGGTCGA-CTTATAGCGGCGTTTCT-
131 GGTCGACCTATAGCGGAGTTTTT-AAAAAGCGCCGCTAATGCTCGATC-TATAGCGGCATTTCTC
97716198 AA
194 AA
* * * *
97716200 AAAGCGCCGCTAATGGTTAATCTATAGCGGTGTTTTTCTAAAAGCACCGCT-AATGCCACTAAAG
1 AAAGCGCCGCTAATGCTCAATCTATAGCGGCGTTTTTCAAAAAGCACCGCTAAATGCCACTAAAG
* * * *
97716264 CTCAACATAAAAC-AACGGC-GTGTGCTTGATTTTTTTGCGGCATTTTTCAAAAAGCGCCACTAA
66 CTCAACATAAAACGAA-GACAGTGTGCTTAATTTTTTTGCGGAATTTTTCAAAAAGCACCACTAA
* *
97716327 TGGTCGACCTATAGTGGAGTTTTTAAAAAGCGCCGCTAATGCTCGATCTATAGCGGCATTTTTCA
130 TGGTCGACCTATAGCGGAGTTTTTAAAAAGCGCCGCTAATGCTCGATCTATAGCGGCATTTCTCA
97716392 A
195 A
* *
97716393 AAAGTGCCGCTAATGCTCAATCTATAGCGGCGCTTTTTGAAAAA
1 AAAGCGCCGCTAATGCTCAATCTATAGCGGCG-TTTTTCAAAAA
97716437 TGTCGCTAAT
Statistics
Matches: 206, Mismatches: 27, Indels: 9
0.85 0.11 0.04
Matches are distributed among these distances:
192 33 0.16
193 95 0.46
194 35 0.17
195 43 0.21
ACGTcount: A:0.30, C:0.21, G:0.20, T:0.29
Consensus pattern (195 bp):
AAAGCGCCGCTAATGCTCAATCTATAGCGGCGTTTTTCAAAAAGCACCGCTAAATGCCACTAAAG
CTCAACATAAAACGAAGACAGTGTGCTTAATTTTTTTGCGGAATTTTTCAAAAAGCACCACTAAT
GGTCGACCTATAGCGGAGTTTTTAAAAAGCGCCGCTAATGCTCGATCTATAGCGGCATTTCTCAA
Found at i:97716955 original size:12 final size:12
Alignment explanation
Indices: 97716925--97716958 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
97716915 CTTTTGATCT
* *
97716925 TTTTATATTTCT
1 TTTTATTTTTCA
97716937 TTTTATTTTTCA
1 TTTTATTTTTCA
97716949 TTTTATTTTT
1 TTTTATTTTT
97716959 TTTAAAAAGA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.15, C:0.06, G:0.00, T:0.79
Consensus pattern (12 bp):
TTTTATTTTTCA
Found at i:97720574 original size:50 final size:50
Alignment explanation
Indices: 97720520--97720621 Score: 195
Period size: 50 Copynumber: 2.0 Consensus size: 50
97720510 GCTTTCTCCT
*
97720520 CTCCTTTCTCTTCTCTAACTTTAGGTTATGATGAACAAAGATGGACAAAA
1 CTCCTTTCTCTTCTCTAACTTTAGGCTATGATGAACAAAGATGGACAAAA
97720570 CTCCTTTCTCTTCTCTAACTTTAGGCTATGATGAACAAAGATGGACAAAA
1 CTCCTTTCTCTTCTCTAACTTTAGGCTATGATGAACAAAGATGGACAAAA
97720620 CT
1 CT
97720622 TTGTTCTTTT
Statistics
Matches: 51, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
50 51 1.00
ACGTcount: A:0.31, C:0.22, G:0.14, T:0.33
Consensus pattern (50 bp):
CTCCTTTCTCTTCTCTAACTTTAGGCTATGATGAACAAAGATGGACAAAA
Found at i:97720737 original size:26 final size:26
Alignment explanation
Indices: 97720706--97720813 Score: 173
Period size: 26 Copynumber: 4.2 Consensus size: 26
97720696 TGAAATGCCC
97720706 ATCATGGAACATTTACCTAAACCATT
1 ATCATGGAACATTTACCTAAACCATT
*
97720732 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAAACCATT
* *
97720758 ATCATGGAATATTTACCTAATCCATT
1 ATCATGGAACATTTACCTAAACCATT
97720784 ATCATGGAACATTTACC-AAACTCATT
1 ATCATGGAACATTTACCTAAAC-CATT
97720810 ATCA
1 ATCA
97720814 ATTTGTACCA
Statistics
Matches: 76, Mismatches: 5, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
25 3 0.04
26 73 0.96
ACGTcount: A:0.37, C:0.23, G:0.07, T:0.32
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAAACCATT
Found at i:97723722 original size:21 final size:21
Alignment explanation
Indices: 97723680--97723722 Score: 52
Period size: 21 Copynumber: 2.0 Consensus size: 21
97723670 CAACTAGTTA
* *
97723680 TTTTTATTTAGTTTTATGTTT
1 TTTTTATTTACTTTCATGTTT
97723701 TTTTTATTTTACTTTCAT-TTT
1 TTTTTA-TTTACTTTCATGTTT
97723722 T
1 T
97723723 ATTGTCATTT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
21 10 0.53
22 9 0.47
ACGTcount: A:0.14, C:0.05, G:0.05, T:0.77
Consensus pattern (21 bp):
TTTTTATTTACTTTCATGTTT
Found at i:97727672 original size:19 final size:17
Alignment explanation
Indices: 97727620--97727690 Score: 62
Period size: 17 Copynumber: 4.3 Consensus size: 17
97727610 TTAGACCTTT
97727620 TAAAAATTTAA-AAT--
1 TAAAAATTTAATAATAA
* *
97727634 TTAAAA-TTAATAAAAA
1 TAAAAATTTAATAATAA
97727650 TAAAAACTTCCTAA-AATAA
1 TAAAAA-TT--TAATAATAA
97727669 TAAAAATTTAATAATAA
1 TAAAAATTTAATAATAA
97727686 TAAAA
1 TAAAA
97727691 TTACTATAAA
Statistics
Matches: 45, Mismatches: 4, Indels: 13
0.73 0.06 0.21
Matches are distributed among these distances:
13 4 0.09
14 7 0.16
16 8 0.18
17 10 0.22
18 3 0.07
19 10 0.22
20 3 0.07
ACGTcount: A:0.65, C:0.04, G:0.00, T:0.31
Consensus pattern (17 bp):
TAAAAATTTAATAATAA
Found at i:97735251 original size:20 final size:23
Alignment explanation
Indices: 97735200--97735251 Score: 56
Period size: 20 Copynumber: 2.4 Consensus size: 23
97735190 ATTCATATTA
*
97735200 TGATCGTTTAGGTAAAATATTTC
1 TGATCATTTAGGTAAAATATTTC
* *
97735223 TTATTATTTA-GT-AAAT-TTTC
1 TGATCATTTAGGTAAAATATTTC
97735243 TGATCATTT
1 TGATCATTT
97735252 TTTTTCCAAA
Statistics
Matches: 24, Mismatches: 5, Indels: 3
0.75 0.16 0.09
Matches are distributed among these distances:
20 11 0.46
21 4 0.17
22 2 0.08
23 7 0.29
ACGTcount: A:0.29, C:0.08, G:0.12, T:0.52
Consensus pattern (23 bp):
TGATCATTTAGGTAAAATATTTC
Found at i:97737913 original size:27 final size:26
Alignment explanation
Indices: 97737876--97737984 Score: 110
Period size: 27 Copynumber: 4.1 Consensus size: 26
97737866 CAGTATGGCT
* *
97737876 ACCATAACAGATATTGTGACAGAGTC
1 ACCAGAACAGATATTGTGACAGAGCC
*
97737902 ACCAGATACAGATATTGTGGCAGAGCC
1 ACCAGA-ACAGATATTGTGACAGAGCC
* * *
97737929 ACCAGAACAGATATTTGTGGCATAACC
1 ACCAGAACAGATA-TTGTGACAGAGCC
* * *
97737956 ACCAGAAACAGATAATGTGGCAAAGCC
1 ACCAG-AACAGATATTGTGACAGAGCC
97737983 AC
1 AC
97737985 TTAACAGAAT
Statistics
Matches: 72, Mismatches: 8, Indels: 5
0.85 0.09 0.06
Matches are distributed among these distances:
26 12 0.17
27 52 0.72
28 8 0.11
ACGTcount: A:0.39, C:0.22, G:0.21, T:0.18
Consensus pattern (26 bp):
ACCAGAACAGATATTGTGACAGAGCC
Found at i:97738171 original size:22 final size:22
Alignment explanation
Indices: 97738143--97738207 Score: 78
Period size: 22 Copynumber: 3.0 Consensus size: 22
97738133 GCAAATACGT
*
97738143 TTGGCACACAGCCATAATCAGG
1 TTGGCACAAAGCCATAATCAGG
* *
97738165 TTGGCACAGAGCCAT-ATGTAGG
1 TTGGCACAAAGCCATAAT-CAGG
*
97738187 TTGGCGCAAAGCCATAATCAG
1 TTGGCACAAAGCCATAATCAG
97738208 AATAATTGGC
Statistics
Matches: 36, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
21 2 0.06
22 32 0.89
23 2 0.06
ACGTcount: A:0.31, C:0.23, G:0.26, T:0.20
Consensus pattern (22 bp):
TTGGCACAAAGCCATAATCAGG
Found at i:97738643 original size:27 final size:27
Alignment explanation
Indices: 97738623--97738897 Score: 401
Period size: 27 Copynumber: 10.2 Consensus size: 27
97738613 GGGTATCTTG
*
97738623 GTAATTCTACCCTATAGGGGTATTTCA
1 GTAATTCTACCCTACAGGGGTATTTCA
* *
97738650 GTATTTCTACCCTACAAGGGTATTTCA
1 GTAATTCTACCCTACAGGGGTATTTCA
*
97738677 GTAATTCTACCCTACAGAGGTATTTCA
1 GTAATTCTACCCTACAGGGGTATTTCA
97738704 GTAATTCTACCCTACAGGGGTATTTCA
1 GTAATTCTACCCTACAGGGGTATTTCA
97738731 GTAATTCTACCCTACAGGGGTATTTC-
1 GTAATTCTACCCTACAGGGGTATTTCA
*
97738757 GATAATTCTACCCTACAGGGGTATTTCG
1 G-TAATTCTACCCTACAGGGGTATTTCA
* *
97738785 GTAATTCTACCCTACA-GGTTATTTCG
1 GTAATTCTACCCTACAGGGGTATTTCA
*
97738811 GTAATTCTACCCTATAGGGGTATTTCA
1 GTAATTCTACCCTACAGGGGTATTTCA
* * *
97738838 GTAATTCTACCGTACAAGGGTATTTTA
1 GTAATTCTACCCTACAGGGGTATTTCA
* * *
97738865 GTAATTCTACCGTACAAGAGTATTTCA
1 GTAATTCTACCCTACAGGGGTATTTCA
97738892 GTAATT
1 GTAATT
97738898 TTGTAAATCG
Statistics
Matches: 228, Mismatches: 17, Indels: 6
0.91 0.07 0.02
Matches are distributed among these distances:
26 25 0.11
27 202 0.89
28 1 0.00
ACGTcount: A:0.27, C:0.20, G:0.17, T:0.36
Consensus pattern (27 bp):
GTAATTCTACCCTACAGGGGTATTTCA
Found at i:97747263 original size:33 final size:32
Alignment explanation
Indices: 97747204--97747342 Score: 127
Period size: 33 Copynumber: 4.2 Consensus size: 32
97747194 ATTTAATAGG
* * *
97747204 GAGGATGATGTTAAATGGGTAAAAGCTGCTA-A
1 GAGGGTGATGTTGAA-GGGTAGAAGCTGCTAGA
97747236 GAAGGGTGATGTTGAAGGTGTAGAAGCTGCTAGA
1 G-AGGGTGATGTTGAAGG-GTAGAAGCTGCTAGA
*
97747270 GAGGGTGATGTTGAAGGGGTAGAAGCTGTTAGA
1 GAGGGTGATGTTGAA-GGGTAGAAGCTGCTAGA
* * * * * * *
97747303 AAAGGTAATGTTTAAATGGTAGAAGCTGATGGA
1 GAGGGTGATG-TTGAAGGGTAGAAGCTGCTAGA
97747336 GAGGGTG
1 GAGGGTG
97747343 TAACTGTTGC
Statistics
Matches: 88, Mismatches: 14, Indels: 9
0.79 0.13 0.08
Matches are distributed among these distances:
32 3 0.03
33 77 0.88
34 8 0.09
ACGTcount: A:0.32, C:0.04, G:0.39, T:0.24
Consensus pattern (32 bp):
GAGGGTGATGTTGAAGGGTAGAAGCTGCTAGA
Found at i:97747406 original size:15 final size:12
Alignment explanation
Indices: 97747368--97747398 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
97747358 TTGAGGCAGA
*
97747368 TGAGTATGGTGG
1 TGAGTAAGGTGG
97747380 TGAGTAAGGTGG
1 TGAGTAAGGTGG
97747392 TGAGTAA
1 TGAGTAA
97747399 AGTAGTGGGC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.26, C:0.00, G:0.45, T:0.29
Consensus pattern (12 bp):
TGAGTAAGGTGG
Found at i:97751754 original size:42 final size:43
Alignment explanation
Indices: 97751707--97751812 Score: 155
Period size: 42 Copynumber: 2.5 Consensus size: 43
97751697 CTAGGGTTAC
*
97751707 TAAGACTTTGTGTAAGACCATAAT-T-GAGATATGACATCTATA
1 TAAGACTTTGTGTAAGACCATAATCTAG-GATATGACATCGATA
* *
97751749 TAAGACTTCGCGTAAGACCAT-ATCTAGGATATGACATCGATA
1 TAAGACTTTGTGTAAGACCATAATCTAGGATATGACATCGATA
97751791 TAAGACTTTGTGTAAGACCATA
1 TAAGACTTTGTGTAAGACCATA
97751813 GCTGGGCTAT
Statistics
Matches: 56, Mismatches: 5, Indels: 5
0.85 0.08 0.08
Matches are distributed among these distances:
41 2 0.04
42 53 0.95
43 1 0.02
ACGTcount: A:0.37, C:0.15, G:0.18, T:0.30
Consensus pattern (43 bp):
TAAGACTTTGTGTAAGACCATAATCTAGGATATGACATCGATA
Found at i:97753912 original size:27 final size:27
Alignment explanation
Indices: 97753874--97753927 Score: 108
Period size: 27 Copynumber: 2.0 Consensus size: 27
97753864 CTTCTTGCAG
97753874 TAACATTTTATTGATTCCCCATCGTAT
1 TAACATTTTATTGATTCCCCATCGTAT
97753901 TAACATTTTATTGATTCCCCATCGTAT
1 TAACATTTTATTGATTCCCCATCGTAT
97753928 ACATACTCCC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.26, C:0.22, G:0.07, T:0.44
Consensus pattern (27 bp):
TAACATTTTATTGATTCCCCATCGTAT
Found at i:97757997 original size:67 final size:65
Alignment explanation
Indices: 97757851--97758004 Score: 175
Period size: 67 Copynumber: 2.3 Consensus size: 65
97757841 CATCATGTGT
* * * * *
97757851 ACAAGAGAGCTACGAGAGATTATGATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACTATG
1 ACAAGAGAGCTACG-G-GA-TATGATGTAGCTAGGTCGCATGCGTGATACCATGAGGACACCATG
97757916 TAG
63 TAG
* *
97757919 ACAAGAGAGCTACGGGATAT-ATGTAGCTAGGTCGCATGCGTGGTTCCAGGTGAAGGACACCATG
1 ACAAGAGAGCTACGGGATATGATGTAGCTAGGTCGCATGCGTGATACCA--TG-AGGACACCATG
97757983 TAG
63 TAG
*
97757986 ACAAGAGAGCTACGAGATA
1 ACAAGAGAGCTACGGGATA
97758005 AACTCGCTAG
Statistics
Matches: 75, Mismatches: 8, Indels: 7
0.83 0.09 0.08
Matches are distributed among these distances:
64 24 0.32
65 3 0.04
66 4 0.05
67 30 0.40
68 14 0.19
ACGTcount: A:0.32, C:0.16, G:0.31, T:0.22
Consensus pattern (65 bp):
ACAAGAGAGCTACGGGATATGATGTAGCTAGGTCGCATGCGTGATACCATGAGGACACCATGTAG
Found at i:97762204 original size:21 final size:21
Alignment explanation
Indices: 97762172--97762271 Score: 121
Period size: 21 Copynumber: 4.8 Consensus size: 21
97762162 CGGGTGGATC
97762172 AGCTCTTTTGAGCTTCTGTTA
1 AGCTCTTTTGAGCTTCTGTTA
* * * *
97762193 AGTTCTTATGAGCTTTTGTTC
1 AGCTCTTTTGAGCTTCTGTTA
*
97762214 AGCTCTTTTGAGCTTCTGTTC
1 AGCTCTTTTGAGCTTCTGTTA
*
97762235 AGTTCTTTTGAGCTTCTGTTCA
1 AGCTCTTTTGAGCTTCTGTT-A
*
97762257 A-CTCTTGTGAGCTTC
1 AGCTCTTTTGAGCTTC
97762272 GTTGGAGTGT
Statistics
Matches: 67, Mismatches: 11, Indels: 2
0.84 0.14 0.03
Matches are distributed among these distances:
21 66 0.99
22 1 0.01
ACGTcount: A:0.13, C:0.20, G:0.19, T:0.48
Consensus pattern (21 bp):
AGCTCTTTTGAGCTTCTGTTA
Found at i:97762218 original size:42 final size:42
Alignment explanation
Indices: 97762170--97762271 Score: 159
Period size: 42 Copynumber: 2.4 Consensus size: 42
97762160 TTCGGGTGGA
*
97762170 TCAGCTCTTTTGAGCTTCTGTTAAGTTCTTATGAGCTTTTGT
1 TCAGCTCTTTTGAGCTTCTGTTAAGTTCTTATGAGCTTCTGT
* *
97762212 TCAGCTCTTTTGAGCTTCTGTTCAGTTCTTTTGAGCTTCTGT
1 TCAGCTCTTTTGAGCTTCTGTTAAGTTCTTATGAGCTTCTGT
* *
97762254 TCAACTCTTGTGAGCTTC
1 TCAGCTCTTTTGAGCTTC
97762272 GTTGGAGTGT
Statistics
Matches: 55, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
42 55 1.00
ACGTcount: A:0.13, C:0.21, G:0.19, T:0.48
Consensus pattern (42 bp):
TCAGCTCTTTTGAGCTTCTGTTAAGTTCTTATGAGCTTCTGT
Found at i:97765115 original size:4 final size:4
Alignment explanation
Indices: 97765103--97765144 Score: 50
Period size: 4 Copynumber: 10.0 Consensus size: 4
97765093 TTTATATGAT
97765103 TAAA TTAAA TAAA TAAA TAAA -AATCA TAAA TAAA TAAA TAAA
1 TAAA -TAAA TAAA TAAA TAAA TAA--A TAAA TAAA TAAA TAAA
97765145 AGATTGATGA
Statistics
Matches: 34, Mismatches: 0, Indels: 7
0.83 0.00 0.17
Matches are distributed among these distances:
3 2 0.06
4 25 0.74
5 5 0.15
6 2 0.06
ACGTcount: A:0.71, C:0.02, G:0.00, T:0.26
Consensus pattern (4 bp):
TAAA
Found at i:97768754 original size:3 final size:3
Alignment explanation
Indices: 97768746--97768779 Score: 68
Period size: 3 Copynumber: 11.3 Consensus size: 3
97768736 CTGGACCCTT
97768746 ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC A
1 ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC A
97768780 AACCAGTCCT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 31 1.00
ACGTcount: A:0.35, C:0.32, G:0.00, T:0.32
Consensus pattern (3 bp):
ATC
Found at i:97769192 original size:11 final size:11
Alignment explanation
Indices: 97769178--97769202 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
97769168 AAAGGAAAGA
97769178 AAAAAAAAAAC
1 AAAAAAAAAAC
97769189 AAAAAAAAAAC
1 AAAAAAAAAAC
97769200 AAA
1 AAA
97769203 GAAATACTAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.92, C:0.08, G:0.00, T:0.00
Consensus pattern (11 bp):
AAAAAAAAAAC
Found at i:97777902 original size:40 final size:41
Alignment explanation
Indices: 97777837--97777931 Score: 124
Period size: 40 Copynumber: 2.4 Consensus size: 41
97777827 AAGTATGTTG
*
97777837 GCACTTAGTGTGC-ATTTCGAGATAGCTTCGGCTATATATA
1 GCACTTAGTGTGCGAATTCGAGATAGCTTCGGCTATATATA
* * *
97777877 GCACTTAGTGTGCGAATTGGA-ATAGCTTCGGCTATATGTG
1 GCACTTAGTGTGCGAATTCGAGATAGCTTCGGCTATATATA
97777917 GCAC-TACGTGTGCGA
1 GCACTTA-GTGTGCGA
97777932 TACTCAGATA
Statistics
Matches: 49, Mismatches: 4, Indels: 4
0.86 0.07 0.07
Matches are distributed among these distances:
39 2 0.04
40 42 0.86
41 5 0.10
ACGTcount: A:0.23, C:0.18, G:0.27, T:0.32
Consensus pattern (41 bp):
GCACTTAGTGTGCGAATTCGAGATAGCTTCGGCTATATATA
Found at i:97781920 original size:19 final size:19
Alignment explanation
Indices: 97781886--97781925 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
97781876 CGATAAGTTA
*
97781886 AGAAATTTTTGGAAAACAT
1 AGAAATTTTTGCAAAACAT
* *
97781905 AGAAATTTTTTCAAAATAT
1 AGAAATTTTTGCAAAACAT
97781924 AG
1 AG
97781926 GGGATACACG
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.47, C:0.05, G:0.12, T:0.35
Consensus pattern (19 bp):
AGAAATTTTTGCAAAACAT
Found at i:97783957 original size:21 final size:23
Alignment explanation
Indices: 97783921--97783962 Score: 61
Period size: 22 Copynumber: 1.9 Consensus size: 23
97783911 TTTTCATTTA
97783921 TTTCACATTTCTAC-AACAAAAT
1 TTTCACATTTCTACAAACAAAAT
*
97783943 TTTCATATTTC-ACAAACAAA
1 TTTCACATTTCTACAAACAAA
97783963 TCCCTAATTG
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 2 0.11
22 16 0.89
ACGTcount: A:0.43, C:0.21, G:0.00, T:0.36
Consensus pattern (23 bp):
TTTCACATTTCTACAAACAAAAT
Found at i:97786833 original size:15 final size:15
Alignment explanation
Indices: 97786813--97786843 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
97786803 CTAATTAGTC
97786813 ATATAGTCAAGTTTA
1 ATATAGTCAAGTTTA
97786828 ATATAGTCAAGTTTA
1 ATATAGTCAAGTTTA
97786843 A
1 A
97786844 GTGTTTATTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.42, C:0.06, G:0.13, T:0.39
Consensus pattern (15 bp):
ATATAGTCAAGTTTA
Found at i:97790724 original size:16 final size:17
Alignment explanation
Indices: 97790687--97790727 Score: 64
Period size: 17 Copynumber: 2.4 Consensus size: 17
97790677 GAATGTAGGT
*
97790687 ATTTTGTGAAAATCTAA
1 ATTTTGCGAAAATCTAA
97790704 ATTTTGCGAAAATCTAA
1 ATTTTGCGAAAATCTAA
*
97790721 TTTTTGC
1 ATTTTGC
97790728 AGGGGTTTTA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
17 22 1.00
ACGTcount: A:0.34, C:0.10, G:0.12, T:0.44
Consensus pattern (17 bp):
ATTTTGCGAAAATCTAA
Found at i:97793587 original size:46 final size:46
Alignment explanation
Indices: 97793537--97793709 Score: 210
Period size: 46 Copynumber: 3.7 Consensus size: 46
97793527 TGGTTGAGCA
97793537 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * *
97793583 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--AATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
97793628 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
97793676 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
97793710 GGGGCGGGTT
Statistics
Matches: 107, Mismatches: 11, Indels: 18
0.79 0.08 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
45 3 0.03
46 61 0.57
47 29 0.27
48 3 0.03
50 3 0.03
51 2 0.02
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:97793693 original size:93 final size:93
Alignment explanation
Indices: 97793534--97793704 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 93
97793524 GGATGGTTGA
* *
97793534 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
97793599 TGAGTCCGAGTTCGTGAAATGTAACTAG
66 TGAGTCCGAGTTCGTGAAATGTAACTAG
*
97793627 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
97793692 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
97793705 ACTTAGGGGC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.22, C:0.22, G:0.29, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAAATGTAACTAG
Found at i:97801168 original size:47 final size:47
Alignment explanation
Indices: 97801050--97801222 Score: 191
Period size: 45 Copynumber: 3.7 Consensus size: 47
97801040 GGATGGTTGA
*
97801050 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTGA-GGATGCGAAT
* *
97801098 G--TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA-GATG-TAACT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTGAGGATGCGAA-T
*
97801141 AGGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-
1 --GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTGA-GGATGCGAAT
* *
97801190 -C-GCCGAGCTCGTTGAGTTGAGTCCGAGTTCACT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACT
97801223 TAGGGGCGGT
Statistics
Matches: 108, Mismatches: 8, Indels: 21
0.79 0.06 0.15
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 33 0.31
46 30 0.28
47 29 0.27
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.21, C:0.21, G:0.29, T:0.28
Consensus pattern (47 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTGAGGATGCGAAT
Found at i:97801948 original size:23 final size:24
Alignment explanation
Indices: 97801918--97801963 Score: 69
Period size: 23 Copynumber: 2.0 Consensus size: 24
97801908 CACTAAAAAT
97801918 AGTATAAATG-GAA-TATAATGAGA
1 AGTATAAATGAGAACT-TAATGAGA
97801941 AGTATAAATGAGAACTTAATGAG
1 AGTATAAATGAGAACTTAATGAG
97801964 TCTATTTTCA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
23 10 0.48
24 10 0.48
25 1 0.05
ACGTcount: A:0.50, C:0.02, G:0.22, T:0.26
Consensus pattern (24 bp):
AGTATAAATGAGAACTTAATGAGA
Found at i:97801952 original size:13 final size:13
Alignment explanation
Indices: 97801918--97801954 Score: 53
Period size: 13 Copynumber: 3.1 Consensus size: 13
97801908 CACTAAAAAT
97801918 AGTATAAATG-GA
1 AGTATAAATGAGA
97801930 A-TAT-AATGAGA
1 AGTATAAATGAGA
97801941 AGTATAAATGAGA
1 AGTATAAATGAGA
97801954 A
1 A
97801955 CTTAATGAGT
Statistics
Matches: 22, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
10 4 0.18
11 6 0.27
12 4 0.18
13 8 0.36
ACGTcount: A:0.54, C:0.00, G:0.22, T:0.24
Consensus pattern (13 bp):
AGTATAAATGAGA
Found at i:97803082 original size:40 final size:40
Alignment explanation
Indices: 97803045--97803227 Score: 198
Period size: 40 Copynumber: 4.6 Consensus size: 40
97803035 GCTACTCGTT
*
97803045 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
* *
97803085 CAATTGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGG-TTATAGTAACTCGCA
* *
97803125 CAAATGCCTTCGGG-CTTAGCCCGG-AATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTA-TAGTAACTCGCA
* * * * *
97803164 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGTTATAGTAAC-TCGCA
97803205 CAAA-GCCTTC-GGACTTAGCCCGG
1 CAAATGCCTTCGGGACTTAGCCCGG
97803228 ACATCATTCA
Statistics
Matches: 122, Mismatches: 14, Indels: 15
0.81 0.09 0.10
Matches are distributed among these distances:
38 2 0.02
39 40 0.33
40 69 0.57
41 11 0.09
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
Found at i:97803146 original size:79 final size:80
Alignment explanation
Indices: 97803045--97803228 Score: 214
Period size: 79 Copynumber: 2.3 Consensus size: 80
97803035 GCTACTCGTT
* * *
97803045 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAATTGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGG-CTTAGCCCGGAAT-TAGTAACTCGCACAAATGCCTTC-GGATCTTAACCC
* *
97803108 GGATTTAGTAAC-TCGCA
63 GGATATAGTAACTTAGCA
* **
97803125 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCGGA
1 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGA
* *
97803190 TATGGTCACTTAGCA
66 TATAGTAACTTAGCA
*
97803205 CAAA-GCCTTCGGACTTAGCCCGGA
1 CAAATGCCTTCGGGCTTAGCCCGGA
97803229 CATCATTCAA
Statistics
Matches: 90, Mismatches: 11, Indels: 7
0.83 0.10 0.06
Matches are distributed among these distances:
78 3 0.03
79 64 0.71
80 23 0.26
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (80 bp):
CAAATGCCTTCGGGCTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGA
TATAGTAACTTAGCA
Found at i:97809518 original size:43 final size:43
Alignment explanation
Indices: 97809467--97809550 Score: 159
Period size: 43 Copynumber: 2.0 Consensus size: 43
97809457 CGGGCCTTCG
*
97809467 AGCCTAGCAGGCTATAATGCCGGTGATTTAATATCGGGCTTTA
1 AGCCTAGCAGGCTATAATGCCGGTGAGTTAATATCGGGCTTTA
97809510 AGCCTAGCAGGCTATAATGCCGGTGAGTTAATATCGGGCTT
1 AGCCTAGCAGGCTATAATGCCGGTGAGTTAATATCGGGCTT
97809551 CGAACCTAAC
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
43 40 1.00
ACGTcount: A:0.25, C:0.19, G:0.27, T:0.29
Consensus pattern (43 bp):
AGCCTAGCAGGCTATAATGCCGGTGAGTTAATATCGGGCTTTA
Found at i:97809564 original size:43 final size:43
Alignment explanation
Indices: 97809456--97809577 Score: 158
Period size: 43 Copynumber: 2.8 Consensus size: 43
97809446 ACAGTGCTAT
* *
97809456 TCGGGCCTTCGAGCCTAGCAGGCTATAATGCCGGTGATTTAATA
1 TCGGG-CTTCGAACCTAGCAGGCTATAATGCCGGTGAGTTAATA
*
97809500 TCGGGCTT-TAAGCCTAGCAGGCTATAATGCCGGTGAGTTAATA
1 TCGGGCTTCGAA-CCTAGCAGGCTATAATGCCGGTGAGTTAATA
* * *
97809543 TCGGGCTTCGAACCTAACAGGC-GTAATGCTGGTGA
1 TCGGGCTTCGAACCTAGCAGGCTATAATGCCGGTGA
97809578 ATGAATTTAG
Statistics
Matches: 69, Mismatches: 7, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
42 12 0.17
43 50 0.72
44 7 0.10
ACGTcount: A:0.24, C:0.21, G:0.29, T:0.26
Consensus pattern (43 bp):
TCGGGCTTCGAACCTAGCAGGCTATAATGCCGGTGAGTTAATA
Found at i:97812853 original size:42 final size:43
Alignment explanation
Indices: 97812751--97812863 Score: 138
Period size: 43 Copynumber: 2.7 Consensus size: 43
97812741 AGCTCATACA
* *
97812751 ATGCCAACGTCCCAGACATGGTCTTACATGTAATCAAATATAG
1 ATGCCAATGTCCCAGACATGGTCTTACATGAAATCAAATATAG
** * * * **
97812794 ATGCCTCTATCCTAGACAGGGTCTTACATGAAATTGAATAT-G
1 ATGCCAATGTCCCAGACATGGTCTTACATGAAATCAAATATAG
97812836 ATGCCAATGTCCCAGACATGGTCTTACA
1 ATGCCAATGTCCCAGACATGGTCTTACA
97812864 CGTAAATCTC
Statistics
Matches: 56, Mismatches: 14, Indels: 1
0.79 0.20 0.01
Matches are distributed among these distances:
42 24 0.43
43 32 0.57
ACGTcount: A:0.32, C:0.23, G:0.18, T:0.27
Consensus pattern (43 bp):
ATGCCAATGTCCCAGACATGGTCTTACATGAAATCAAATATAG
Found at i:97815618 original size:30 final size:30
Alignment explanation
Indices: 97815584--97815644 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
97815574 TCCTTAACTC
97815584 AAACTTTGGAAAAATTACAATTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
* * * * *
97815614 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
97815644 A
1 A
97815645 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.31, C:0.23, G:0.08, T:0.38
Consensus pattern (30 bp):
AAACTTTGGAAAAATTACAATTTTGCCCCT
Found at i:97821976 original size:10 final size:10
Alignment explanation
Indices: 97821961--97822002 Score: 57
Period size: 10 Copynumber: 3.9 Consensus size: 10
97821951 TGCTTATATC
97821961 CATACCAAAT
1 CATACCAAAT
97821971 CATACCAAAT
1 CATACCAAAT
97821981 CATAAGCCAAAGT
1 CAT-A-CCAAA-T
97821994 CATACCAAA
1 CATACCAAA
97822003 AAAATGTTTC
Statistics
Matches: 29, Mismatches: 0, Indels: 5
0.85 0.00 0.15
Matches are distributed among these distances:
10 13 0.45
11 6 0.21
12 6 0.21
13 4 0.14
ACGTcount: A:0.50, C:0.29, G:0.05, T:0.17
Consensus pattern (10 bp):
CATACCAAAT
Found at i:97822784 original size:42 final size:43
Alignment explanation
Indices: 97822688--97822857 Score: 141
Period size: 43 Copynumber: 4.0 Consensus size: 43
97822678 AGCTCATACA
* * * *
97822688 ATGCCAACGTCCTAGACATGGTCTTACATGTAATCAAATATAG
1 ATGCCAACGTCCCAGACAGGGTCTTACACGAAATCAAATATAG
* * *
97822731 ATG-CATCTGTCCCAGATAGGGTCTTACACGAAATCGAATA-AG
1 ATGCCAAC-GTCCCAGACAGGGTCTTACACGAAATCAAATATAG
* * * *
97822773 ATGCCAATGTCCCAGACATGGTCTTACACGTAAATCTCAA-ATCG
1 ATGCCAACGTCCCAGACAGGGTCTTACACG-AAATC-AAATATAG
* * * *
97822817 ATTCCAACGTCCCAGA-TGTGGTCTTACACGATATCACATAT
1 ATGCCAACGTCCCAGACAG-GGTCTTACACGAAATCAAATAT
97822858 CGAAATCCTA
Statistics
Matches: 100, Mismatches: 20, Indels: 14
0.75 0.15 0.10
Matches are distributed among these distances:
42 29 0.29
43 43 0.43
44 28 0.28
ACGTcount: A:0.32, C:0.24, G:0.17, T:0.26
Consensus pattern (43 bp):
ATGCCAACGTCCCAGACAGGGTCTTACACGAAATCAAATATAG
Found at i:97823327 original size:37 final size:37
Alignment explanation
Indices: 97823286--97823361 Score: 143
Period size: 37 Copynumber: 2.1 Consensus size: 37
97823276 AAAATTTCCT
*
97823286 TATACCCATACTTGGTTAAATATTCATGAAGTTCATA
1 TATACCCATACTTGGTCAAATATTCATGAAGTTCATA
97823323 TATACCCATACTTGGTCAAATATTCATGAAGTTCATA
1 TATACCCATACTTGGTCAAATATTCATGAAGTTCATA
97823360 TA
1 TA
97823362 AGCCTATATC
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.36, C:0.17, G:0.11, T:0.37
Consensus pattern (37 bp):
TATACCCATACTTGGTCAAATATTCATGAAGTTCATA
Found at i:97824279 original size:22 final size:20
Alignment explanation
Indices: 97824253--97824293 Score: 55
Period size: 20 Copynumber: 1.9 Consensus size: 20
97824243 TTATCAAAGT
97824253 ATTTAAGTTTATTTTCTTTTTC
1 ATTTAAG-TTA-TTTCTTTTTC
*
97824275 ATTTATGTTATTTCTTTTT
1 ATTTAAGTTATTTCTTTTT
97824294 TACAATAAAG
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 9 0.50
21 3 0.17
22 6 0.33
ACGTcount: A:0.17, C:0.07, G:0.05, T:0.71
Consensus pattern (20 bp):
ATTTAAGTTATTTCTTTTTC
Found at i:97828102 original size:6 final size:6
Alignment explanation
Indices: 97828093--97828135 Score: 50
Period size: 6 Copynumber: 6.8 Consensus size: 6
97828083 CTTCAAGAAT
* *
97828093 AAATAT AAATAA AAGTAAAA AAATAA AAATAA AAATAA AAATA
1 AAATAA AAATAA AAAT-A-A AAATAA AAATAA AAATAA AAATA
97828136 GTTTAAAAAG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
6 26 0.81
7 2 0.06
8 4 0.12
ACGTcount: A:0.79, C:0.00, G:0.02, T:0.19
Consensus pattern (6 bp):
AAATAA
Found at i:97828122 original size:20 final size:20
Alignment explanation
Indices: 97828093--97828133 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 20
97828083 CTTCAAGAAT
* *
97828093 AAATATAAATAAAAGTAAAA
1 AAATAAAAATAAAAATAAAA
97828113 AAATAAAAATAAAAATAAAA
1 AAATAAAAATAAAAATAAAA
97828133 A
1 A
97828134 TAGTTTAAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.80, C:0.00, G:0.02, T:0.17
Consensus pattern (20 bp):
AAATAAAAATAAAAATAAAA
Found at i:97831135 original size:22 final size:22
Alignment explanation
Indices: 97831060--97831182 Score: 69
Period size: 22 Copynumber: 5.3 Consensus size: 22
97831050 ACATGCACAT
*
97831060 ATGTGATAAGGCCGAATGGCCA
1 ATGTGATAAGGCAGAATGGCCA
*
97831082 ATGTGATAAATGTG-A-ACAT-GCATA
1 ATGTGAT-AA-G-GCAGA-ATGGC-CA
97831106 TATGTGATAAGGCAGAATGGCCA
1 -ATGTGATAAGGCAGAATGGCCA
*
97831129 ATGTGATAAATGTG-A-ACAT-GCATA
1 ATGTGAT-AA-G-GCAGA-ATGGC-CA
97831153 TATGTGATAAGGCAGAATGGCCA
1 -ATGTGATAAGGCAGAATGGCCA
97831176 ATGTGAT
1 ATGTGAT
97831183 GAACGTGGAA
Statistics
Matches: 78, Mismatches: 5, Indels: 36
0.66 0.04 0.30
Matches are distributed among these distances:
22 23 0.29
23 20 0.26
24 19 0.24
25 16 0.21
ACGTcount: A:0.37, C:0.11, G:0.27, T:0.25
Consensus pattern (22 bp):
ATGTGATAAGGCAGAATGGCCA
Found at i:97831215 original size:141 final size:141
Alignment explanation
Indices: 97830885--97831228 Score: 438
Period size: 141 Copynumber: 2.4 Consensus size: 141
97830875 AAATAAGACC
* ** ** * * * *
97830885 GAATGGCAAATGTGATGAATGTGAACATGCATTTGTGTGATAAGGCCGAATGGCCAATGTGATGA
1 GAATGGCCAATGTGATGAACATGAACATGCACATATGTGAGAAAGCCGAATGGCCAATGTGATAA
* * * * *
97830950 ATGTGAACATGTACATATGTGATAAGGCCGAATGGCCAATGTGATGAATTTGAACATGCATATGT
66 ATGTGAACATGCACATATGTGATAAGGCAGAATGGCCAATGTGATAAATGTGAACATGCATATAT
*
97831015 GTGATAAGGCC
131 GTGATAAGGCA
* * *
97831026 GAATGGCCAATGTGATGAATATGAACATGCACATATGTGATAAGGCCGAATGGCCAATGTGATAA
1 GAATGGCCAATGTGATGAACATGAACATGCACATATGTGAGAAAGCCGAATGGCCAATGTGATAA
*
97831091 ATGTGAACATGCATATATGTGATAAGGCAGAATGGCCAATGTGATAAATGTGAACATGCATATAT
66 ATGTGAACATGCACATATGTGATAAGGCAGAATGGCCAATGTGATAAATGTGAACATGCATATAT
97831156 GTGATAAGGCA
131 GTGATAAGGCA
* * * * * **
97831167 GAATGGCCAATGTGATGAACGTGGAA-GTGTATATATGTGGGAAAGCCGAATGGTTAATGTGA
1 GAATGGCCAATGTGATGAACAT-GAACATGCACATATGTGAGAAAGCCGAATGGCCAATGTGA
97831229 AATGTGTATG
Statistics
Matches: 179, Mismatches: 23, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
141 176 0.98
142 3 0.02
ACGTcount: A:0.35, C:0.11, G:0.28, T:0.26
Consensus pattern (141 bp):
GAATGGCCAATGTGATGAACATGAACATGCACATATGTGAGAAAGCCGAATGGCCAATGTGATAA
ATGTGAACATGCACATATGTGATAAGGCAGAATGGCCAATGTGATAAATGTGAACATGCATATAT
GTGATAAGGCA
Found at i:97831219 original size:47 final size:47
Alignment explanation
Indices: 97830847--97831185 Score: 493
Period size: 47 Copynumber: 7.2 Consensus size: 47
97830837 TTAGGATTTT
* * * * *
97830847 ATGTGATGGATGTG-A-ATGTATATATATGAAATAAGACCGAATGGCAA
1 ATGTGATGAATGTGAACATGCATATATGTG--ATAAGGCCGAATGGCCA
* *
97830894 ATGTGATGAATGTGAACATGCATTTGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
97830941 ATGTGATGAATGTGAACATGTACATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
97830988 ATGTGATGAATTTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
97831035 ATGTGATGAATATGAACATGCACATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
97831082 ATGTGATAAATGTGAACATGCATATATGTGATAAGGCAGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
97831129 ATGTGATAAATGTGAACATGCATATATGTGATAAGGCAGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
97831176 ATGTGATGAA
1 ATGTGATGAA
97831186 CGTGGAAGTG
Statistics
Matches: 267, Mismatches: 23, Indels: 4
0.91 0.08 0.01
Matches are distributed among these distances:
47 257 0.96
48 1 0.00
49 9 0.03
ACGTcount: A:0.36, C:0.11, G:0.27, T:0.26
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
Found at i:97831271 original size:46 final size:48
Alignment explanation
Indices: 97831193--97831298 Score: 128
Period size: 46 Copynumber: 2.2 Consensus size: 48
97831183 GAACGTGGAA
* *
97831193 GTGTATATATGTGGGAAAGCCGAATGGTTAATGTGAAAT-GTGTATGAGAT
1 GTGTATATA--TGGGAAAGCCAAATGGCTAATGTGAAATAG-GTATGAGAT
* *
97831243 G-G-ATATATGGTAAAGCCAAATGGCTAATGTGAGATAGGTATGAGAT
1 GTGTATATATGGGAAAGCCAAATGGCTAATGTGAAATAGGTATGAGAT
97831289 GTGTATATAT
1 GTGTATATAT
97831299 ATATTGTGGC
Statistics
Matches: 49, Mismatches: 4, Indels: 8
0.80 0.07 0.13
Matches are distributed among these distances:
46 34 0.69
47 2 0.04
48 11 0.22
49 1 0.02
50 1 0.02
ACGTcount: A:0.34, C:0.05, G:0.30, T:0.31
Consensus pattern (48 bp):
GTGTATATATGGGAAAGCCAAATGGCTAATGTGAAATAGGTATGAGAT
Found at i:97844036 original size:30 final size:30
Alignment explanation
Indices: 97844000--97844059 Score: 102
Period size: 30 Copynumber: 2.0 Consensus size: 30
97843990 ATTTAATATG
*
97844000 AACTTTTGCAAAATTACATTTTTGCCCCTA
1 AACTTTTGCAAAATTACACTTTTGCCCCTA
*
97844030 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTTGCAAAATTACACTTTTGCCCCTA
97844060 GGCTCGGGAA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.28, C:0.25, G:0.07, T:0.40
Consensus pattern (30 bp):
AACTTTTGCAAAATTACACTTTTGCCCCTA
Found at i:97848647 original size:13 final size:13
Alignment explanation
Indices: 97848629--97848654 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
97848619 GGGATTTGTT
97848629 TTAACTAAACTAA
1 TTAACTAAACTAA
97848642 TTAACTAAACTAA
1 TTAACTAAACTAA
97848655 GAATGCACAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.54, C:0.15, G:0.00, T:0.31
Consensus pattern (13 bp):
TTAACTAAACTAA
Found at i:97852492 original size:50 final size:49
Alignment explanation
Indices: 97852375--97852606 Score: 235
Period size: 50 Copynumber: 4.8 Consensus size: 49
97852365 CCACATTATG
* * * *
97852375 AGAGCCAGTGTAAGACCATGTTTTGGACAT-GCATCGGC-CTTAAGATGT-
1 AGAGCCAGTGTAAGACCATGTCTAGGACATGGCATCGACAC--GAGATGTA
*
97852423 A-AGTCAGTGTAAGACCATGTCTAGGACATGGCATCGACACGGAGATGTA
1 AGAGCCAGTGTAAGACCATGTCTAGGACATGGCATCGACAC-GAGATGTA
* ** *
97852472 AGAGCCAGTGTGAGACCATGTCTAGGACATGGCATCGGTACA-GATTTGTG
1 AGAGCCAGTGTAAGACCATGTCTAGGACATGGCATC-G-ACACGAGATGTA
* * ** *
97852522 AGAGCCAGTGTAAGACTATGTCTGGGACATGGCATC-A-ACTTGATGGA
1 AGAGCCAGTGTAAGACCATGTCTAGGACATGGCATCGACACGAGATGTA
*
97852569 TGAGCCAGTGTAAGACCATGTCTAGGACATGGCATCGA
1 AGAGCCAGTGTAAGACCATGTCTAGGACATGGCATCGA
97852607 TATTACACCC
Statistics
Matches: 153, Mismatches: 23, Indels: 16
0.80 0.12 0.08
Matches are distributed among these distances:
46 1 0.01
47 61 0.40
48 15 0.10
49 2 0.01
50 70 0.46
51 1 0.01
52 3 0.02
ACGTcount: A:0.29, C:0.19, G:0.29, T:0.23
Consensus pattern (49 bp):
AGAGCCAGTGTAAGACCATGTCTAGGACATGGCATCGACACGAGATGTA
Found at i:97852500 original size:97 final size:96
Alignment explanation
Indices: 97852375--97852605 Score: 274
Period size: 97 Copynumber: 2.4 Consensus size: 96
97852365 CCACATTATG
* * *
97852375 AGAGCCAGTGTAAGACCATGTTTTGGACAT-GCATCGGCCTTA-AGA-TGT-A-AGTCAGTGTAA
1 AGAGCCAGTGTAAGACCATGTCTAGGACATGGCATCGG---TACAGATTGTGAGAGCCAGTGTAA
*
97852435 GACCATGTCTAGGACATGGCATCGACACGGAGATGTA
63 GACCATGTCTAGGACATGGCATC-A-AC-GAGATGGA
*
97852472 AGAGCCAGTGTGAGACCATGTCTAGGACATGGCATCGGTACAGATTTGTGAGAGCCAGTGTAAGA
1 AGAGCCAGTGTAAGACCATGTCTAGGACATGGCATCGGTACAGA-TTGTGAGAGCCAGTGTAAGA
* * **
97852537 CTATGTCTGGGACATGGCATCAACTTGATGGA
65 CCATGTCTAGGACATGGCATCAACGAGATGGA
*
97852569 TGAGCCAGTGTAAGACCATGTCTAGGACATGGCATCG
1 AGAGCCAGTGTAAGACCATGTCTAGGACATGGCATCG
97852606 ATATTACACC
Statistics
Matches: 117, Mismatches: 11, Indels: 12
0.84 0.08 0.09
Matches are distributed among these distances:
95 2 0.02
96 3 0.03
97 67 0.57
98 12 0.10
99 2 0.02
100 31 0.26
ACGTcount: A:0.29, C:0.19, G:0.29, T:0.23
Consensus pattern (96 bp):
AGAGCCAGTGTAAGACCATGTCTAGGACATGGCATCGGTACAGATTGTGAGAGCCAGTGTAAGAC
CATGTCTAGGACATGGCATCAACGAGATGGA
Found at i:97859217 original size:13 final size:13
Alignment explanation
Indices: 97859199--97859223 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
97859189 GTAAGTGATT
97859199 TTGATGATTTTTC
1 TTGATGATTTTTC
97859212 TTGATGATTTTT
1 TTGATGATTTTT
97859224 GCACTTTTAG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.16, C:0.04, G:0.16, T:0.64
Consensus pattern (13 bp):
TTGATGATTTTTC
Found at i:97860043 original size:46 final size:48
Alignment explanation
Indices: 97859899--97860261 Score: 322
Period size: 46 Copynumber: 7.7 Consensus size: 48
97859889 TTTGTGTGCT
* * * *
97859899 AGTGTAAGA-CATGTCTAGGATAT-GCATCGGCCAC-ATTATGAGAGCT
1 AGTGTAAGACCATGTCTAGGACATGGCATCGGCCTCGA-GATGAGAGCC
* * ** * *
97859945 AGTGTAAGACCATGTCTAGGACATAGTATCGGTATTGAGATGAGAGCT
1 AGTGTAAGACCATGTCTAGGACATGGCATCGGCCTCGAGATGAGAGCC
*
97859993 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTCGAGATGTA-AGCC
1 AGTGTAAGACCATGTCTAGGACATGGCATCGGCCTCGAGATG-AGAGCC
* * *
97860039 AGTGTAAGA-CATGTCTGGGACAT-GCATCGG-CTACGAGAT--GTGTC
1 AGTGTAAGACCATGTCTAGGACATGGCATCGGCCT-CGAGATGAGAGCC
* * *
97860083 AGTGTAAGACCATGTCTAGGACATGGCATTGGCATGGAGATGTGAGAGCC
1 AGTGTAAGACCATGTCTAGGACATGGCATCGGCCTCGAGA--TGAGAGCC
* * ** * *
97860133 AGTGTAAGACCATGTCTGGGACATGGCGTCGGCCTCGATTTCGATAGTC
1 AGTGTAAGACCATGTCTAGGACATGGCATCGGCCTCGAGAT-GAGAGCC
* * *
97860182 AGTGTAAAACCATGTCTAGGACATGGCATC-GACT--TGATGGATGAGCC
1 AGTGTAAGACCATGTCTAGGACATGGCATCGGCCTCGAGAT-GA-GAGCC
97860229 AGTGTAAGACCATGTCTAGGACATGGCATCGGC
1 AGTGTAAGACCATGTCTAGGACATGGCATCGGC
97860262 ATTACACCCT
Statistics
Matches: 259, Mismatches: 42, Indels: 30
0.78 0.13 0.09
Matches are distributed among these distances:
44 11 0.04
45 15 0.06
46 74 0.29
47 60 0.23
48 30 0.12
49 33 0.13
50 36 0.14
ACGTcount: A:0.27, C:0.18, G:0.30, T:0.24
Consensus pattern (48 bp):
AGTGTAAGACCATGTCTAGGACATGGCATCGGCCTCGAGATGAGAGCC
Found at i:97860251 original size:96 final size:96
Alignment explanation
Indices: 97859937--97860261 Score: 307
Period size: 96 Copynumber: 3.4 Consensus size: 96
97859927 GGCCACATTA
* * * * * * *
97859937 TGAGAGCTAGTGTAAGACCATGTCTAGGACATAGTATCGG--TATTGAGATGAGAGCTAGTGTAA
1 TGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTA-CGAGATGTG-TC-AGTGTAA
* * * *
97860000 GA-CATGTCTGGGACAT-GCATCGGCCTCGAGATG
63 AACCATGTCTAGGACATGGCATCGACAT-GAGATG
*
97860033 T-A-AGCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGG-CTACGAGATGTGTCAGTGTAAGAC
1 TGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTACGAGATGTGTCAGTGTAAAAC
* *
97860093 CATGTCTAGGACATGGCATTGGCATGGAGATG
66 CATGTCTAGGACATGGCATCGACAT-GAGATG
* **
97860125 TGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCGTCGGCCT-CGATTTCGATAGTCAGTGTAA
1 TGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTACGAGAT-G-T-GTCAGTGTAA
*
97860189 AACCATGTCTAGGACATGGCATCGAC-T-TGATG
63 AACCATGTCTAGGACATGGCATCGACATGAGATG
*
97860221 -GATGAGCCAGTGTAAGACCATGTCTAGGACATGGCATCGGC
1 TGA-GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGC
97860262 ATTACACCCT
Statistics
Matches: 198, Mismatches: 19, Indels: 24
0.82 0.08 0.10
Matches are distributed among these distances:
90 9 0.05
91 14 0.07
92 28 0.14
93 16 0.08
94 25 0.13
95 17 0.09
96 51 0.26
97 3 0.02
98 2 0.01
99 33 0.17
ACGTcount: A:0.27, C:0.18, G:0.31, T:0.24
Consensus pattern (96 bp):
TGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTACGAGATGTGTCAGTGTAAAAC
CATGTCTAGGACATGGCATCGACATGAGATG
Found at i:97864143 original size:26 final size:26
Alignment explanation
Indices: 97864114--97864167 Score: 99
Period size: 26 Copynumber: 2.1 Consensus size: 26
97864104 GGGAGTTAGT
97864114 AAATTTGAAGGAATGAATCATTTTTA
1 AAATTTGAAGGAATGAATCATTTTTA
*
97864140 AAATTTTAAGGAATGAATCATTTTTA
1 AAATTTGAAGGAATGAATCATTTTTA
97864166 AA
1 AA
97864168 GAAACTCTCT
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.44, C:0.04, G:0.13, T:0.39
Consensus pattern (26 bp):
AAATTTGAAGGAATGAATCATTTTTA
Found at i:97865334 original size:11 final size:10
Alignment explanation
Indices: 97865306--97865338 Score: 52
Period size: 9 Copynumber: 3.5 Consensus size: 10
97865296 ATGACAAAAA
97865306 ATATTTTTA-
1 ATATTTTTAT
97865315 ATATTTTTAT
1 ATATTTTTAT
97865325 ATATTTTT-T
1 ATATTTTTAT
97865334 ATATT
1 ATATT
97865339 AAAATACATT
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
9 15 0.65
10 8 0.35
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (10 bp):
ATATTTTTAT
Found at i:97869696 original size:18 final size:19
Alignment explanation
Indices: 97869667--97869714 Score: 64
Period size: 18 Copynumber: 2.6 Consensus size: 19
97869657 AAAAATTCAA
*
97869667 AAAAATTAATAAAGAAT-TT
1 AAAAATT-ATAAAAAATGTT
97869686 AAAAATTATAAAAAATGTT
1 AAAAATTATAAAAAATGTT
97869705 -AAAATTATAA
1 AAAAATTATAA
97869715 TTTTAAAAAA
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
18 18 0.67
19 9 0.33
ACGTcount: A:0.65, C:0.00, G:0.04, T:0.31
Consensus pattern (19 bp):
AAAAATTATAAAAAATGTT
Found at i:97869701 original size:10 final size:10
Alignment explanation
Indices: 97869636--97869701 Score: 50
Period size: 10 Copynumber: 6.8 Consensus size: 10
97869626 TTTAACAAAC
97869636 TAAAAAA-TA
1 TAAAAAATTA
* *
97869645 TCAAAATTTA
1 TAAAAAATTA
*
97869655 TTAAAAATTCA
1 TAAAAAATT-A
97869666 -AAAAAATTAA
1 TAAAAAATT-A
*
97869676 TAAAGAATT-
1 TAAAAAATTA
97869685 T-AAAAATTA
1 TAAAAAATTA
97869694 TAAAAAAT
1 TAAAAAAT
97869702 GTTAAAATTA
Statistics
Matches: 44, Mismatches: 8, Indels: 9
0.72 0.13 0.15
Matches are distributed among these distances:
8 6 0.14
9 7 0.16
10 23 0.52
11 8 0.18
ACGTcount: A:0.65, C:0.03, G:0.02, T:0.30
Consensus pattern (10 bp):
TAAAAAATTA
Found at i:97877309 original size:46 final size:46
Alignment explanation
Indices: 97877245--97877452 Score: 169
Period size: 46 Copynumber: 4.5 Consensus size: 46
97877235 TGTGTGAGCT
* * *
97877245 AGTGTAAGACATGTCTGGGACATGCATCAGCCACATTACG-AAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCACATGATGAAAGCC
* * *
97877290 AGTGTAAGACCATGTCTGGGAGATGCCATC-GACA-ATGA-GACAAGTGCT
1 AGTGTAAGA-CATGTCTGGGACATG-CATCGGCCACATGATGA-AA--GCC
* * * *
97877338 AGTGTAAGACATGTCTAGGACATGCATCGGCCTCCA-GATGTAAGCT
1 AGTGTAAGACATGTCTGGGACATGCATCGGCC-ACATGATGAAAGCC
* * * * *
97877384 AGTGTAAGACATGTCTGGGACATGCATCGGCTAAAAGATG--TGTC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCACATGATGAAAGCC
97877428 AGTGTAAGACCATGTCTGGGACATG
1 AGTGTAAGA-CATGTCTGGGACATG
97877453 GTATCAGTAT
Statistics
Matches: 135, Mismatches: 16, Indels: 24
0.77 0.09 0.14
Matches are distributed among these distances:
44 11 0.08
45 28 0.21
46 60 0.44
47 19 0.14
48 15 0.11
49 2 0.01
ACGTcount: A:0.30, C:0.20, G:0.28, T:0.23
Consensus pattern (46 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCCACATGATGAAAGCC
Found at i:97877401 original size:93 final size:92
Alignment explanation
Indices: 97877242--97877412 Score: 238
Period size: 93 Copynumber: 1.8 Consensus size: 92
97877232 ACTTGTGTGA
* *
97877242 GCTAGTGTAAGACATGTCTGGGACATGCATCAGCCACATTACGAAGCCAGTGTAAGACCATGTCT
1 GCTAGTGTAAGACATGTCTAGGACATGCATCAGCCACATGACGAAGCCAGTGTAAGACCATGTCT
*
97877307 GGGAGATGCCATCGACAATGAGACAAGT
66 GGGACATG-CATCGACAATGAGACAAGT
* * * *
97877335 GCTAGTGTAAGACATGTCTAGGACATGCATCGGCCTCCA-GATGTAAGCTAGTGTAAGA-CATGT
1 GCTAGTGTAAGACATGTCTAGGACATGCATCAGCC-ACATGACG-AAGCCAGTGTAAGACCATGT
97877398 CTGGGACATGCATCG
64 CTGGGACATGCATCG
97877413 GCTAAAAGAT
Statistics
Matches: 69, Mismatches: 7, Indels: 5
0.85 0.09 0.06
Matches are distributed among these distances:
92 5 0.07
93 49 0.71
94 15 0.22
ACGTcount: A:0.29, C:0.21, G:0.27, T:0.22
Consensus pattern (92 bp):
GCTAGTGTAAGACATGTCTAGGACATGCATCAGCCACATGACGAAGCCAGTGTAAGACCATGTCT
GGGACATGCATCGACAATGAGACAAGT
Found at i:97878544 original size:41 final size:41
Alignment explanation
Indices: 97878466--97878562 Score: 124
Period size: 41 Copynumber: 2.4 Consensus size: 41
97878456 CATGTATTTA
* * *
97878466 CACACGGGCCA-GGACACGGGCATGTCATGGTCGTGTGAAG
1 CACACGGGCCAGGGACACGGGCATGTCATAGCCATGTGAAG
* *
97878506 CACACGGGCCAGGGACACGGGCGTGTTATAGCCATGTGAAG
1 CACACGGGCCAGGGACACGGGCATGTCATAGCCATGTGAAG
* *
97878547 CACATGGTCCAGGGAC
1 CACACGGGCCAGGGAC
97878563 GCAAATGTGT
Statistics
Matches: 49, Mismatches: 7, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
40 11 0.22
41 38 0.78
ACGTcount: A:0.24, C:0.26, G:0.36, T:0.14
Consensus pattern (41 bp):
CACACGGGCCAGGGACACGGGCATGTCATAGCCATGTGAAG
Found at i:97878911 original size:22 final size:22
Alignment explanation
Indices: 97878883--97878926 Score: 79
Period size: 22 Copynumber: 2.0 Consensus size: 22
97878873 AGTTGGATCG
*
97878883 AGTCTGGGTGACTTGTGAATGT
1 AGTCTGGGTAACTTGTGAATGT
97878905 AGTCTGGGTAACTTGTGAATGT
1 AGTCTGGGTAACTTGTGAATGT
97878927 TGTGTACATG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.20, C:0.09, G:0.34, T:0.36
Consensus pattern (22 bp):
AGTCTGGGTAACTTGTGAATGT
Found at i:97880090 original size:13 final size:14
Alignment explanation
Indices: 97880057--97880091 Score: 54
Period size: 13 Copynumber: 2.6 Consensus size: 14
97880047 ATAATTAAAC
97880057 ATAAAATAAATGAA
1 ATAAAATAAATGAA
*
97880071 ATGAAATAAA-GAA
1 ATAAAATAAATGAA
97880084 ATAAAATA
1 ATAAAATA
97880092 GAAAAAGAAC
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
13 10 0.53
14 9 0.47
ACGTcount: A:0.71, C:0.00, G:0.09, T:0.20
Consensus pattern (14 bp):
ATAAAATAAATGAA
Found at i:97881024 original size:44 final size:44
Alignment explanation
Indices: 97880941--97881032 Score: 105
Period size: 44 Copynumber: 2.1 Consensus size: 44
97880931 TGTTCAGGGA
* * * *
97880941 TACTTCGACCTTAAGTCGATGAGGCACTATAAGTGTCGTATTGT
1 TACTTCGACCTTAAGTCAATGAGGCACAATAAGTATCGTACTGT
* **
97880985 TACTTCGA-CTTCGAGTCAATGAGGCACAATGTGTATCGTACTGT
1 TACTTCGACCTT-AAGTCAATGAGGCACAATAAGTATCGTACTGT
97881029 TACT
1 TACT
97881033 GTTACTTCGG
Statistics
Matches: 40, Mismatches: 7, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
43 3 0.08
44 37 0.93
ACGTcount: A:0.25, C:0.20, G:0.22, T:0.34
Consensus pattern (44 bp):
TACTTCGACCTTAAGTCAATGAGGCACAATAAGTATCGTACTGT
Found at i:97882010 original size:43 final size:42
Alignment explanation
Indices: 97881889--97882016 Score: 166
Period size: 43 Copynumber: 3.0 Consensus size: 42
97881879 AAAATTTGCG
* * * * *
97881889 GCGTTTGTGGAAAAAGCGCCACTAAAAGTCAAGGCCTTTAGCG
1 GCGTTTGTGGGAAAAGCG-CGCTAAAAGTCATGGCTTTTAGCA
*
97881932 GCGCTTGTGGGAAAAGCGCTGCTAAAAGTCATGGCTTTTAGCA
1 GCGTTTGTGGGAAAAGCGC-GCTAAAAGTCATGGCTTTTAGCA
*
97881975 GCGTTTGTGGGAAAAGCGACGCTAAAAGTCTTGGCTTTTAGC
1 GCGTTTGTGGGAAAAGCG-CGCTAAAAGTCATGGCTTTTAGC
97882017 TGCTCTTTTA
Statistics
Matches: 75, Mismatches: 8, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
42 1 0.01
43 73 0.97
44 1 0.01
ACGTcount: A:0.27, C:0.19, G:0.30, T:0.25
Consensus pattern (42 bp):
GCGTTTGTGGGAAAAGCGCGCTAAAAGTCATGGCTTTTAGCA
Found at i:97882140 original size:31 final size:32
Alignment explanation
Indices: 97882102--97882174 Score: 87
Period size: 31 Copynumber: 2.3 Consensus size: 32
97882092 TATTAAATCA
*
97882102 AACCAAAAA-AAGAAAATATAGCAT-AAAATGC
1 AACCAAAAATAA-AAAATATAGCATAAAAATAC
* *
97882133 AACCAAAAATAACAAATTTAGCATAAAAAATAC
1 AACCAAAAATAAAAAATATAGCAT-AAAAATAC
97882166 AACCAAAAA
1 AACCAAAAA
97882175 CATTAATTCT
Statistics
Matches: 36, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
31 19 0.53
32 2 0.06
33 15 0.42
ACGTcount: A:0.66, C:0.15, G:0.05, T:0.14
Consensus pattern (32 bp):
AACCAAAAATAAAAAATATAGCATAAAAATAC
Found at i:97882875 original size:13 final size:14
Alignment explanation
Indices: 97882849--97882877 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
97882839 ACTAATAACG
97882849 AATTAAACCATTAT
1 AATTAAACCATTAT
97882863 AATTAAA-CATTAT
1 AATTAAACCATTAT
97882876 AA
1 AA
97882878 ATATTTATAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 8 0.53
14 7 0.47
ACGTcount: A:0.55, C:0.10, G:0.00, T:0.34
Consensus pattern (14 bp):
AATTAAACCATTAT
Found at i:97885558 original size:46 final size:46
Alignment explanation
Indices: 97885508--97885683 Score: 225
Period size: 46 Copynumber: 3.8 Consensus size: 46
97885498 TATTTGGGCA
*
97885508 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGATCG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
* * *
97885554 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAC---G
97885599 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
* *
97885647 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
97885684 GCGGGTTACA
Statistics
Matches: 112, Mismatches: 9, Indels: 18
0.81 0.06 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
45 3 0.03
46 64 0.57
47 29 0.26
48 3 0.03
50 4 0.04
51 3 0.03
ACGTcount: A:0.20, C:0.22, G:0.29, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
Found at i:97885663 original size:93 final size:93
Alignment explanation
Indices: 97885504--97885675 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
97885494 TGGATATTTG
* *
97885504 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGATCGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
97885569 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
*
97885597 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
97885662 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
97885676 ACTTATGGGC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.28
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:97891061 original size:46 final size:46
Alignment explanation
Indices: 97891008--97891183 Score: 221
Period size: 46 Copynumber: 3.8 Consensus size: 46
97890998 TATTTGGGCA
97891008 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* * * * * * *
97891054 TCCGAACTCATTGAGTTGAGTCCGAGTTC-GTGAAATGTA-ACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACT--TATGGATGCGA-GCG
*
97891101 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* *
97891147 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
97891184 GCGGGTTACA
Statistics
Matches: 108, Mismatches: 17, Indels: 10
0.80 0.13 0.07
Matches are distributed among these distances:
45 1 0.01
46 70 0.65
47 36 0.33
48 1 0.01
ACGTcount: A:0.22, C:0.22, G:0.28, T:0.28
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
Found at i:97891163 original size:93 final size:93
Alignment explanation
Indices: 97891004--97891175 Score: 308
Period size: 93 Copynumber: 1.8 Consensus size: 93
97890994 GGGATATTTG
* *
97891004 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCCGAACTCATTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCATTGAG
97891069 TTGAGTCCGAGTTCGTGAAATGTAACTA
66 TTGAGTCCGAGTTCGTGAAATGTAACTA
* *
97891097 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCATTGAG
97891162 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
97891176 ACTTATGGGC
Statistics
Matches: 75, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.22, C:0.22, G:0.29, T:0.27
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCATTGAG
TTGAGTCCGAGTTCGTGAAATGTAACTA
Found at i:97892767 original size:18 final size:18
Alignment explanation
Indices: 97892744--97892784 Score: 73
Period size: 18 Copynumber: 2.3 Consensus size: 18
97892734 TCTTCTCTAT
97892744 AACATACCCATATGAAAA
1 AACATACCCATATGAAAA
*
97892762 AACATACCCATATGAAAT
1 AACATACCCATATGAAAA
97892780 AACAT
1 AACAT
97892785 GAAGAAAAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.54, C:0.22, G:0.05, T:0.20
Consensus pattern (18 bp):
AACATACCCATATGAAAA
Found at i:97893287 original size:17 final size:17
Alignment explanation
Indices: 97893242--97893290 Score: 53
Period size: 18 Copynumber: 2.8 Consensus size: 17
97893232 GACAAATGGG
*
97893242 TTTGATTTTGGGGAAAT
1 TTTGATTTAGGGGAAAT
* * *
97893259 TTAGGGTTTAGGGGCAAT
1 TT-TGATTTAGGGGAAAT
97893277 TTTGATTTAGGGGA
1 TTTGATTTAGGGGA
97893291 GAAGGAAATT
Statistics
Matches: 24, Mismatches: 7, Indels: 2
0.73 0.21 0.06
Matches are distributed among these distances:
17 11 0.46
18 13 0.54
ACGTcount: A:0.22, C:0.02, G:0.35, T:0.41
Consensus pattern (17 bp):
TTTGATTTAGGGGAAAT
Found at i:97893709 original size:15 final size:15
Alignment explanation
Indices: 97893668--97893718 Score: 50
Period size: 15 Copynumber: 3.3 Consensus size: 15
97893658 TTTGAAAAAA
*
97893668 ATTTAATTATATTGAAT
1 ATTTAA-TAT-TTAAAT
* *
97893685 AATTATTATTTAAAT
1 ATTTAATATTTAAAT
97893700 ATTTAATATTTAAAT
1 ATTTAATATTTAAAT
97893715 -TTTA
1 ATTTA
97893719 GGTAAATCAA
Statistics
Matches: 29, Mismatches: 5, Indels: 3
0.78 0.14 0.08
Matches are distributed among these distances:
14 4 0.14
15 18 0.62
16 3 0.10
17 4 0.14
ACGTcount: A:0.43, C:0.00, G:0.02, T:0.55
Consensus pattern (15 bp):
ATTTAATATTTAAAT
Found at i:97895211 original size:40 final size:41
Alignment explanation
Indices: 97895164--97895474 Score: 335
Period size: 41 Copynumber: 7.7 Consensus size: 41
97895154 ACTTTTTGCA
* *
97895164 GCGTTTGGACCAAAAATGCCGCTATTGATCAG-TTTTAGTG
1 GCGTTTGGGCCAAAAACGCCGCTATTGATCAGTTTTTAGTG
* * * *
97895204 GCGTTTGGACCAAAAACGACACTATTGATCAGTTTTTAGTA
1 GCGTTTGGGCCAAAAACGCCGCTATTGATCAGTTTTTAGTG
* * *
97895245 GTG-TTGGGCCAACAACGCCGCTATTTATCAGTTTTTAGTG
1 GCGTTTGGGCCAAAAACGCCGCTATTGATCAGTTTTTAGTG
* * * *
97895285 GCGTTT-GG-CTAAAACTGCTGCTATTCATAAGTTTTTAGTG
1 GCGTTTGGGCCAAAAAC-GCCGCTATTGATCAGTTTTTAGTG
* * **
97895325 GCCTTTGGGCCAAAAATGCCAATATTGATCAGTTTTTAGTG
1 GCGTTTGGGCCAAAAACGCCGCTATTGATCAGTTTTTAGTG
* **
97895366 GCGTTTGGGCGAAAAATACCGCTATTGATCTA-TTTTTAGTG
1 GCGTTTGGGCCAAAAACGCCGCTATTGATC-AGTTTTTAGTG
** * *
97895407 GCACTTGGGCGAAAAACGCCGCTATTAATCAGTTTTTAGTG
1 GCGTTTGGGCCAAAAACGCCGCTATTGATCAGTTTTTAGTG
* *
97895448 GTGTTTTGGCCAAAAACGCCGCTATTG
1 GCGTTTGGGCCAAAAACGCCGCTATTG
97895475 CTTAGTCTTT
Statistics
Matches: 223, Mismatches: 41, Indels: 13
0.81 0.15 0.05
Matches are distributed among these distances:
39 5 0.02
40 91 0.41
41 121 0.54
42 6 0.03
ACGTcount: A:0.25, C:0.18, G:0.23, T:0.34
Consensus pattern (41 bp):
GCGTTTGGGCCAAAAACGCCGCTATTGATCAGTTTTTAGTG
Found at i:97896984 original size:43 final size:42
Alignment explanation
Indices: 97896841--97896985 Score: 159
Period size: 42 Copynumber: 3.4 Consensus size: 42
97896831 CAGATAACAG
97896841 GGTCTTACAGGAAATCAAGTACGATGCCAACGTCCCAGACGC
1 GGTCTTACAGGAAATCAAGTACGATGCCAACGTCCCAGACGC
** * * * * **
97896883 TATCTTACATGTAATCAAATATCGATGCC-ACTATCTTAGACAG-
1 GGTCTTACAGGAAATCAAGTA-CGATGCCAAC-GTCCCAGAC-GC
97896926 GGTCTTACAGGAAATCAAGTACGATGCCAACGTCCCAGACGC
1 GGTCTTACAGGAAATCAAGTACGATGCCAACGTCCCAGACGC
*
97896968 GGTCTTACATGTAAATCA
1 GGTCTTACA-GGAAATCA
97896986 TAAATTAATA
Statistics
Matches: 80, Mismatches: 17, Indels: 11
0.74 0.16 0.10
Matches are distributed among these distances:
41 1 0.01
42 40 0.50
43 38 0.47
44 1 0.01
ACGTcount: A:0.32, C:0.25, G:0.19, T:0.23
Consensus pattern (42 bp):
GGTCTTACAGGAAATCAAGTACGATGCCAACGTCCCAGACGC
Found at i:97904346 original size:18 final size:18
Alignment explanation
Indices: 97904323--97904361 Score: 60
Period size: 18 Copynumber: 2.2 Consensus size: 18
97904313 ATTAAACATA
* *
97904323 AAATAAATGAAATGAAAT
1 AAATAAATAAAATAAAAT
97904341 AAATAAATAAAATAAAAT
1 AAATAAATAAAATAAAAT
97904359 AAA
1 AAA
97904362 GAATAGAGAA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.74, C:0.00, G:0.05, T:0.21
Consensus pattern (18 bp):
AAATAAATAAAATAAAAT
Found at i:97905266 original size:44 final size:44
Alignment explanation
Indices: 97905216--97905303 Score: 124
Period size: 44 Copynumber: 2.0 Consensus size: 44
97905206 TTCGACCTTA
*
97905216 AGTCGATGAGGCACTATAAGTGTCGTACTGTTACT-TTGACTTCG
1 AGTCGATGAGGCACCATAAGTGTCGTACTGTTACTGTT-ACTTCG
* **
97905260 AGTCGATGTGGCACCATGTGTGTCGTACTGTTACTGTTACTTCG
1 AGTCGATGAGGCACCATAAGTGTCGTACTGTTACTGTTACTTCG
97905304 GTTTAATCTG
Statistics
Matches: 39, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
44 37 0.95
45 2 0.05
ACGTcount: A:0.19, C:0.19, G:0.26, T:0.35
Consensus pattern (44 bp):
AGTCGATGAGGCACCATAAGTGTCGTACTGTTACTGTTACTTCG
Found at i:97916473 original size:19 final size:19
Alignment explanation
Indices: 97916449--97916489 Score: 82
Period size: 19 Copynumber: 2.2 Consensus size: 19
97916439 CATGGCCACA
97916449 TACAAAATGAATCAAATAT
1 TACAAAATGAATCAAATAT
97916468 TACAAAATGAATCAAATAT
1 TACAAAATGAATCAAATAT
97916487 TAC
1 TAC
97916490 CCTAAGCCAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 22 1.00
ACGTcount: A:0.56, C:0.12, G:0.05, T:0.27
Consensus pattern (19 bp):
TACAAAATGAATCAAATAT
Found at i:97916809 original size:19 final size:19
Alignment explanation
Indices: 97916785--97916824 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
97916775 TGTGTCATCA
*
97916785 TAAATTCATAGGCATAACT
1 TAAATTCATAGACATAACT
**
97916804 TAAATTTGTAGACATAACT
1 TAAATTCATAGACATAACT
97916823 TA
1 TA
97916825 CACATTTTCA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.42, C:0.12, G:0.10, T:0.35
Consensus pattern (19 bp):
TAAATTCATAGACATAACT
Found at i:97917882 original size:14 final size:14
Alignment explanation
Indices: 97917865--97917924 Score: 84
Period size: 14 Copynumber: 4.2 Consensus size: 14
97917855 GGTAAAATAT
97917865 TTTCTGGAAAATGA
1 TTTCTGGAAAATGA
*
97917879 TTTCTGGAAAATAA
1 TTTCTGGAAAATGA
*
97917893 TTTCTTGAAAAATGA
1 TTTC-TGGAAAATGA
*
97917908 TTTTTGGAAAATGA
1 TTTCTGGAAAATGA
97917922 TTT
1 TTT
97917925 ACTTTTCTGG
Statistics
Matches: 40, Mismatches: 5, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
14 29 0.73
15 11 0.28
ACGTcount: A:0.37, C:0.05, G:0.17, T:0.42
Consensus pattern (14 bp):
TTTCTGGAAAATGA
Found at i:97917905 original size:29 final size:28
Alignment explanation
Indices: 97917858--97917924 Score: 89
Period size: 29 Copynumber: 2.4 Consensus size: 28
97917848 GTTTGCAGGT
* *
97917858 AAAATATTTTCTGGAAAATGATTTCTGG
1 AAAATAATTTCTGAAAAATGATTTCTGG
*
97917886 AAAATAATTTCTTGAAAAATGATTTTTGG
1 AAAATAATTTC-TGAAAAATGATTTCTGG
*
97917915 AAAATGATTT
1 AAAATAATTT
97917925 ACTTTTCTGG
Statistics
Matches: 34, Mismatches: 4, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
28 10 0.29
29 24 0.71
ACGTcount: A:0.40, C:0.04, G:0.15, T:0.40
Consensus pattern (28 bp):
AAAATAATTTCTGAAAAATGATTTCTGG
Found at i:97918407 original size:22 final size:22
Alignment explanation
Indices: 97918382--97918470 Score: 92
Period size: 22 Copynumber: 4.0 Consensus size: 22
97918372 ATCCAAGTGC
*
97918382 ATAACTAATATTACACCATATG
1 ATAACTAATATTACACCACATG
97918404 ATAACTAATATTACACCACATG
1 ATAACTAATATTACACCACATG
* **
97918426 ATAACAACAATATT-GTCCA-AGTG
1 ATAAC--TAATATTACACCACA-TG
97918449 CATAACTAATATTACACCACAT
1 -ATAACTAATATTACACCACAT
97918471 TAAAAGTATC
Statistics
Matches: 54, Mismatches: 7, Indels: 11
0.75 0.10 0.15
Matches are distributed among these distances:
22 33 0.61
23 9 0.17
24 12 0.22
ACGTcount: A:0.45, C:0.21, G:0.06, T:0.28
Consensus pattern (22 bp):
ATAACTAATATTACACCACATG
Found at i:97919488 original size:27 final size:30
Alignment explanation
Indices: 97919422--97919494 Score: 89
Period size: 32 Copynumber: 2.5 Consensus size: 30
97919412 GTCAATCATT
*
97919422 TCAATATCCAACAAGCTTAAAACATAATAAAC
1 TCAATATCTAACAAGCTTAAAAC--AATAAAC
*
97919454 TCAATATCTAACAAGCTTGAAAC-AT-AA-
1 TCAATATCTAACAAGCTTAAAACAATAAAC
97919481 TCAATATCTAACAA
1 TCAATATCTAACAA
97919495 AATCAAGACA
Statistics
Matches: 39, Mismatches: 2, Indels: 5
0.85 0.04 0.11
Matches are distributed among these distances:
27 14 0.36
28 2 0.05
29 2 0.05
32 21 0.54
ACGTcount: A:0.51, C:0.21, G:0.04, T:0.25
Consensus pattern (30 bp):
TCAATATCTAACAAGCTTAAAACAATAAAC
Found at i:97921023 original size:15 final size:15
Alignment explanation
Indices: 97921003--97921031 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
97920993 TTCTCAAGTA
97921003 ATGACTAAAGTTACC
1 ATGACTAAAGTTACC
97921018 ATGACTAAAGTTAC
1 ATGACTAAAGTTAC
97921032 ACTTATACAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.41, C:0.17, G:0.14, T:0.28
Consensus pattern (15 bp):
ATGACTAAAGTTACC
Found at i:97927396 original size:22 final size:22
Alignment explanation
Indices: 97927370--97927421 Score: 95
Period size: 22 Copynumber: 2.4 Consensus size: 22
97927360 AAATGAAAAT
97927370 GAAAATGAAATTGGAATACTTA
1 GAAAATGAAATTGGAATACTTA
97927392 GAAAATGAAATTGGAATACTTA
1 GAAAATGAAATTGGAATACTTA
*
97927414 TAAAATGA
1 GAAAATGA
97927422 TGGAAGAATG
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
22 29 1.00
ACGTcount: A:0.52, C:0.04, G:0.17, T:0.27
Consensus pattern (22 bp):
GAAAATGAAATTGGAATACTTA
Found at i:97939092 original size:13 final size:12
Alignment explanation
Indices: 97939025--97939093 Score: 59
Period size: 13 Copynumber: 5.3 Consensus size: 12
97939015 AATTTTAAAC
97939025 AAACTTTTTCAA
1 AAACTTTTTCAA
* *
97939037 AAAGTATTTCTTAA
1 AAACT-TTT-TCAA
97939051 AATCACTTTTTCAA
1 AA--ACTTTTTCAA
97939065 AATACTTTTT-AA
1 AA-ACTTTTTCAA
97939077 AAACTCTTTTCAA
1 AAACT-TTTTCAA
97939090 AAAC
1 AAAC
97939094 AATGTTAAAT
Statistics
Matches: 46, Mismatches: 5, Indels: 11
0.74 0.08 0.18
Matches are distributed among these distances:
11 3 0.07
12 12 0.26
13 16 0.35
14 10 0.22
15 3 0.07
16 2 0.04
ACGTcount: A:0.42, C:0.16, G:0.01, T:0.41
Consensus pattern (12 bp):
AAACTTTTTCAA
Found at i:97947686 original size:16 final size:16
Alignment explanation
Indices: 97947665--97947698 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
97947655 CCAATATCCA
* *
97947665 ATTATCATATTTGCAC
1 ATTATCACATTTACAC
97947681 ATTATCACATTTACAC
1 ATTATCACATTTACAC
97947697 AT
1 AT
97947699 ATATATTCAT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.35, C:0.21, G:0.03, T:0.41
Consensus pattern (16 bp):
ATTATCACATTTACAC
Found at i:97948486 original size:4 final size:4
Alignment explanation
Indices: 97948477--97948518 Score: 59
Period size: 4 Copynumber: 10.2 Consensus size: 4
97948467 TGTGCTTCTG
97948477 TTTC TTTC TTTC TTTC TCTT- TTTC TTTC TTTC TTTTC TTTC T
1 TTTC TTTC TTTC TTTC T-TTC TTTC TTTC TTTC -TTTC TTTC T
97948519 AATTTTGGTT
Statistics
Matches: 35, Mismatches: 0, Indels: 6
0.85 0.00 0.15
Matches are distributed among these distances:
3 2 0.06
4 27 0.77
5 6 0.17
ACGTcount: A:0.00, C:0.24, G:0.00, T:0.76
Consensus pattern (4 bp):
TTTC
Found at i:97948502 original size:20 final size:19
Alignment explanation
Indices: 97948472--97948516 Score: 72
Period size: 20 Copynumber: 2.3 Consensus size: 19
97948462 TAGACTGTGC
*
97948472 TTCTGTTTCTTTCTTTCTT
1 TTCTTTTTCTTTCTTTCTT
97948491 TCTCTTTTTCTTTCTTTCTT
1 T-TCTTTTTCTTTCTTTCTT
97948511 TTCTTT
1 TTCTTT
97948517 CTAATTTTGG
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
19 6 0.25
20 18 0.75
ACGTcount: A:0.00, C:0.22, G:0.02, T:0.76
Consensus pattern (19 bp):
TTCTTTTTCTTTCTTTCTT
Found at i:97948648 original size:39 final size:40
Alignment explanation
Indices: 97948576--97948653 Score: 99
Period size: 42 Copynumber: 1.9 Consensus size: 40
97948566 TTATTTGTTT
*
97948576 TATTATTATATAATATATATATACTTAACAATTAAGATTTCA
1 TATTATAATATAATATATATATAC-TAACAATTAA-ATTTCA
97948618 TATTATAATATAATATA-ATATA-TATA-AATTAAATTT
1 TATTATAATATAATATATATATACTA-ACAATTAAATTT
97948654 ACACATAAAC
Statistics
Matches: 34, Mismatches: 1, Indels: 6
0.83 0.02 0.15
Matches are distributed among these distances:
38 4 0.12
39 8 0.24
40 1 0.03
41 5 0.15
42 16 0.47
ACGTcount: A:0.49, C:0.04, G:0.01, T:0.46
Consensus pattern (40 bp):
TATTATAATATAATATATATATACTAACAATTAAATTTCA
Found at i:97953129 original size:16 final size:16
Alignment explanation
Indices: 97953108--97953150 Score: 52
Period size: 16 Copynumber: 2.7 Consensus size: 16
97953098 CCAATATCCA
*
97953108 ATTATCATATTTTCAC
1 ATTATCATATTTACAC
*
97953124 ATTATCACATTTACAC
1 ATTATCATATTTACAC
97953140 ATATAT-ATATT
1 AT-TATCATATT
97953151 CATAATATAT
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
16 20 0.87
17 3 0.13
ACGTcount: A:0.37, C:0.16, G:0.00, T:0.47
Consensus pattern (16 bp):
ATTATCATATTTACAC
Found at i:97953947 original size:9 final size:9
Alignment explanation
Indices: 97953930--97953963 Score: 52
Period size: 9 Copynumber: 3.9 Consensus size: 9
97953920 GGTTCTTACC
97953930 TTCTTTCTT
1 TTCTTTCTT
*
97953939 TTTTTTC-T
1 TTCTTTCTT
97953947 TTCTTTCTT
1 TTCTTTCTT
97953956 TTCTTTCT
1 TTCTTTCT
97953964 AATTTGGTTT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
8 7 0.32
9 15 0.68
ACGTcount: A:0.00, C:0.21, G:0.00, T:0.79
Consensus pattern (9 bp):
TTCTTTCTT
Found at i:97953948 original size:13 final size:13
Alignment explanation
Indices: 97953930--97953963 Score: 59
Period size: 13 Copynumber: 2.6 Consensus size: 13
97953920 GGTTCTTACC
*
97953930 TTCTTTCTTTTTT
1 TTCTTTCTTTCTT
97953943 TTCTTTCTTTCTT
1 TTCTTTCTTTCTT
97953956 TTCTTTCT
1 TTCTTTCT
97953964 AATTTGGTTT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 20 1.00
ACGTcount: A:0.00, C:0.21, G:0.00, T:0.79
Consensus pattern (13 bp):
TTCTTTCTTTCTT
Found at i:97953952 original size:17 final size:17
Alignment explanation
Indices: 97953930--97953963 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
97953920 GGTTCTTACC
*
97953930 TTCTTTCTTTTTTTTCT
1 TTCTTTCTTTTCTTTCT
97953947 TTCTTTCTTTTCTTTCT
1 TTCTTTCTTTTCTTTCT
97953964 AATTTGGTTT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.00, C:0.21, G:0.00, T:0.79
Consensus pattern (17 bp):
TTCTTTCTTTTCTTTCT
Found at i:97961093 original size:2 final size:2
Alignment explanation
Indices: 97961088--97961163 Score: 152
Period size: 2 Copynumber: 38.0 Consensus size: 2
97961078 GATATATATA
97961088 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
97961130 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
97961164 CAAGTGCCAT
Statistics
Matches: 74, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 74 1.00
ACGTcount: A:0.00, C:0.00, G:0.50, T:0.50
Consensus pattern (2 bp):
TG
Found at i:97965484 original size:6 final size:6
Alignment explanation
Indices: 97965467--97965512 Score: 74
Period size: 6 Copynumber: 7.7 Consensus size: 6
97965457 GGATAAAAAG
* *
97965467 GATGAT GATGGT GGTGGT GATGGT GATGGT GATGGT GATGGT GATG
1 GATGGT GATGGT GATGGT GATGGT GATGGT GATGGT GATGGT GATG
97965513 AACTTGACTG
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
6 37 1.00
ACGTcount: A:0.17, C:0.00, G:0.50, T:0.33
Consensus pattern (6 bp):
GATGGT
Found at i:97967737 original size:17 final size:17
Alignment explanation
Indices: 97967717--97967751 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
97967707 TTAAAATTAA
97967717 AATT-AAAATATAAATAT
1 AATTAAAAATA-AAATAT
97967734 AATTAAAAATAAAATAT
1 AATTAAAAATAAAATAT
97967751 A
1 A
97967752 TATATTTATT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 11 0.65
18 6 0.35
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (17 bp):
AATTAAAAATAAAATAT
Found at i:97967741 original size:23 final size:23
Alignment explanation
Indices: 97967684--97967756 Score: 78
Period size: 23 Copynumber: 3.3 Consensus size: 23
97967674 CACAATTTGA
* *
97967684 AAATATAATAAAAATT-AATTAT
1 AAATATAATTAAAATTAAAATAT
* *
97967706 -ATTAAAATTAAAATTAAAATAT
1 AAATATAATTAAAATTAAAATAT
*
97967728 AAATATAATTAAAAATAAAATAT
1 AAATATAATTAAAATTAAAATAT
*
97967751 ATATAT
1 AAATAT
97967757 TTATTATATA
Statistics
Matches: 41, Mismatches: 8, Indels: 3
0.79 0.15 0.06
Matches are distributed among these distances:
21 12 0.29
22 5 0.12
23 24 0.59
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (23 bp):
AAATATAATTAAAATTAAAATAT
Found at i:97973773 original size:16 final size:16
Alignment explanation
Indices: 97973752--97973793 Score: 52
Period size: 16 Copynumber: 2.7 Consensus size: 16
97973742 ATTTTACGAT
97973752 TTTTAAAATGTTTATA
1 TTTTAAAATGTTTATA
*
97973768 TTTT-AAAT-TTTATT
1 TTTTAAAATGTTTATA
97973782 TATTTAAAATGT
1 T-TTTAAAATGT
97973794 CAGTTATTCT
Statistics
Matches: 22, Mismatches: 1, Indels: 5
0.79 0.04 0.18
Matches are distributed among these distances:
14 6 0.27
15 7 0.32
16 8 0.36
17 1 0.05
ACGTcount: A:0.36, C:0.00, G:0.05, T:0.60
Consensus pattern (16 bp):
TTTTAAAATGTTTATA
Found at i:97973872 original size:15 final size:15
Alignment explanation
Indices: 97973837--97973881 Score: 56
Period size: 15 Copynumber: 3.1 Consensus size: 15
97973827 TTTTATAAAT
*
97973837 TAAAAATAAAAAATA
1 TAAAAATAAATAATA
*
97973852 TTAAAATAAATAATA
1 TAAAAATAAATAATA
*
97973867 TAAAAA-AATTAATA
1 TAAAAATAAATAATA
97973881 T
1 T
97973882 GAATATGATT
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
14 8 0.31
15 18 0.69
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (15 bp):
TAAAAATAAATAATA
Found at i:97984817 original size:41 final size:41
Alignment explanation
Indices: 97984743--97984951 Score: 220
Period size: 41 Copynumber: 5.1 Consensus size: 41
97984733 TACCTAAAAT
97984743 AATACACCGGCACGAAGCCTGCTAGGCTCAAGGCCTGATAC
1 AATACACCGGCACGAAGCCTGCTAGGCTCAAGGCCTGATAC
* * * *
97984784 AACACACTGGCATGAAGCCTGCTAGGCTTAAGGCCTGATAC
1 AATACACCGGCACGAAGCCTGCTAGGCTCAAGGCCTGATAC
* * *
97984825 AATACACCAGCACAAAGCCTGCTAGGCTCAAAGCCTGATAC
1 AATACACCGGCACGAAGCCTGCTAGGCTCAAGGCCTGATAC
* * * * * * *
97984866 AATACACCGACAAGATGCCTACTAGGCTCAAAGCCTGTTAT
1 AATACACCGGCACGAAGCCTGCTAGGCTCAAGGCCTGATAC
** ** * * * *
97984907 GGTACACTTGCTCGAAGCCTGCTTGGCTCAAGACCCGATAC
1 AATACACCGGCACGAAGCCTGCTAGGCTCAAGGCCTGATAC
97984948 AATA
1 AATA
97984952 TCTCCAGTAT
Statistics
Matches: 132, Mismatches: 36, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
41 132 1.00
ACGTcount: A:0.31, C:0.29, G:0.21, T:0.19
Consensus pattern (41 bp):
AATACACCGGCACGAAGCCTGCTAGGCTCAAGGCCTGATAC
Found at i:97987125 original size:31 final size:31
Alignment explanation
Indices: 97987090--97987153 Score: 119
Period size: 31 Copynumber: 2.1 Consensus size: 31
97987080 AAGCTCATTG
*
97987090 TCGAGTTTGTCTCTACTTAACAAATGACCCT
1 TCGAGTTTGTCTCTACTCAACAAATGACCCT
97987121 TCGAGTTTGTCTCTACTCAACAAATGACCCT
1 TCGAGTTTGTCTCTACTCAACAAATGACCCT
97987152 TC
1 TC
97987154 ATATCTTCGA
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.25, C:0.28, G:0.12, T:0.34
Consensus pattern (31 bp):
TCGAGTTTGTCTCTACTCAACAAATGACCCT
Found at i:97994056 original size:3 final size:3
Alignment explanation
Indices: 97994048--97994074 Score: 54
Period size: 3 Copynumber: 9.0 Consensus size: 3
97994038 CACCATGGTA
97994048 GCT GCT GCT GCT GCT GCT GCT GCT GCT
1 GCT GCT GCT GCT GCT GCT GCT GCT GCT
97994075 TCATCTTCTT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 24 1.00
ACGTcount: A:0.00, C:0.33, G:0.33, T:0.33
Consensus pattern (3 bp):
GCT
Found at i:97996812 original size:60 final size:60
Alignment explanation
Indices: 97996719--97996840 Score: 244
Period size: 60 Copynumber: 2.0 Consensus size: 60
97996709 ATTATATGGA
97996719 TTTAAATGGATTGATACATGCATTGGATTATGTGGTATTGATCTTAACACAAATATAAAT
1 TTTAAATGGATTGATACATGCATTGGATTATGTGGTATTGATCTTAACACAAATATAAAT
97996779 TTTAAATGGATTGATACATGCATTGGATTATGTGGTATTGATCTTAACACAAATATAAAT
1 TTTAAATGGATTGATACATGCATTGGATTATGTGGTATTGATCTTAACACAAATATAAAT
97996839 TT
1 TT
97996841 AGCATAAGAA
Statistics
Matches: 62, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
60 62 1.00
ACGTcount: A:0.36, C:0.08, G:0.16, T:0.39
Consensus pattern (60 bp):
TTTAAATGGATTGATACATGCATTGGATTATGTGGTATTGATCTTAACACAAATATAAAT
Found at i:98000923 original size:18 final size:19
Alignment explanation
Indices: 98000889--98000925 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
98000879 TAGCTACGGA
98000889 ATTAAAACAATTAAAATTT
1 ATTAAAACAATTAAAATTT
*
98000908 ATTAATACAA-TAAAATTT
1 ATTAAAACAATTAAAATTT
98000926 CAATTTCATA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 8 0.47
19 9 0.53
ACGTcount: A:0.57, C:0.05, G:0.00, T:0.38
Consensus pattern (19 bp):
ATTAAAACAATTAAAATTT
Found at i:98000945 original size:7 final size:7
Alignment explanation
Indices: 98000933--98000958 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
98000923 TTTCAATTTC
98000933 ATATTGA
1 ATATTGA
98000940 ATATTGA
1 ATATTGA
98000947 ATATTGA
1 ATATTGA
98000954 ATATT
1 ATATT
98000959 TAAATTTTTA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.42, C:0.00, G:0.12, T:0.46
Consensus pattern (7 bp):
ATATTGA
Found at i:98001387 original size:4 final size:4
Alignment explanation
Indices: 98001370--98001414 Score: 51
Period size: 4 Copynumber: 11.5 Consensus size: 4
98001360 CCATGTGTGA
98001370 CTTT CTTT -TCTT CTTT CTTT C-TT -TTT CTTT CTTT CTTTT CTTT CT
1 CTTT CTTT CT-TT CTTT CTTT CTTT CTTT CTTT CTTT C-TTT CTTT CT
98001415 AATTTGTATG
Statistics
Matches: 36, Mismatches: 0, Indels: 10
0.78 0.00 0.22
Matches are distributed among these distances:
3 5 0.14
4 26 0.72
5 5 0.14
ACGTcount: A:0.00, C:0.24, G:0.00, T:0.76
Consensus pattern (4 bp):
CTTT
Found at i:98001399 original size:14 final size:14
Alignment explanation
Indices: 98001370--98001414 Score: 65
Period size: 14 Copynumber: 3.1 Consensus size: 14
98001360 CCATGTGTGA
98001370 CTTTCTTTTCTTCTTT
1 CTTTC-TTT-TTCTTT
98001386 CTTTCTTTTTCTTT
1 CTTTCTTTTTCTTT
98001400 CTTTC-TTTTCTTT
1 CTTTCTTTTTCTTT
98001413 CT
1 CT
98001415 AATTTGTATG
Statistics
Matches: 29, Mismatches: 0, Indels: 3
0.91 0.00 0.09
Matches are distributed among these distances:
13 10 0.34
14 11 0.38
15 3 0.10
16 5 0.17
ACGTcount: A:0.00, C:0.24, G:0.00, T:0.76
Consensus pattern (14 bp):
CTTTCTTTTTCTTT
Found at i:98001471 original size:18 final size:20
Alignment explanation
Indices: 98001450--98001493 Score: 56
Period size: 21 Copynumber: 2.2 Consensus size: 20
98001440 ATTTTTTTTG
98001450 TTATAC-TAACTT-TTATTA
1 TTATACTTAACTTATTATTA
*
98001468 TTATACTTTAATTTATTATTA
1 TTATAC-TTAACTTATTATTA
98001489 TTATA
1 TTATA
98001494 ATATATATAC
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
18 6 0.27
20 5 0.23
21 11 0.50
ACGTcount: A:0.34, C:0.07, G:0.00, T:0.59
Consensus pattern (20 bp):
TTATACTTAACTTATTATTA
Found at i:98006701 original size:12 final size:12
Alignment explanation
Indices: 98006684--98006714 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
98006674 GAAGCATGGG
98006684 AGAAAAAGAGAA
1 AGAAAAAGAGAA
*
98006696 AGAAAAAGGGAA
1 AGAAAAAGAGAA
98006708 AGAAAAA
1 AGAAAAA
98006715 TAAAAGAGAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.74, C:0.00, G:0.26, T:0.00
Consensus pattern (12 bp):
AGAAAAAGAGAA
Found at i:98009422 original size:22 final size:21
Alignment explanation
Indices: 98009387--98009432 Score: 67
Period size: 22 Copynumber: 2.1 Consensus size: 21
98009377 TTTATAACTC
98009387 AAAAAATTATAAAAAAAT-CT
1 AAAAAATTATAAAAAAATCCT
98009407 AAAAAATATATAAAAAAAATCCT
1 AAAAAAT-TAT-AAAAAAATCCT
98009430 AAA
1 AAA
98009433 CCCAAAACTC
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
20 7 0.30
21 3 0.13
22 8 0.35
23 5 0.22
ACGTcount: A:0.72, C:0.07, G:0.00, T:0.22
Consensus pattern (21 bp):
AAAAAATTATAAAAAAATCCT
Found at i:98010149 original size:20 final size:20
Alignment explanation
Indices: 98010124--98010173 Score: 70
Period size: 17 Copynumber: 2.6 Consensus size: 20
98010114 TGGCTTAAAA
98010124 TTGGTAGTGGATTGTTGTTG
1 TTGGTAGTGGATTGTTGTTG
98010144 TTGGTAGTGG---GTTGTTG
1 TTGGTAGTGGATTGTTGTTG
*
98010161 GTGGTAGTGGATT
1 TTGGTAGTGGATT
98010174 AGTGGATGGT
Statistics
Matches: 26, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
17 16 0.62
20 10 0.38
ACGTcount: A:0.10, C:0.00, G:0.44, T:0.46
Consensus pattern (20 bp):
TTGGTAGTGGATTGTTGTTG
Done.