Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A06
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 115140250
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2234201 characters in sequence are not A, C, G, or T
File 289 of 345
Found at i:98437839 original size:34 final size:30
Alignment explanation
Indices: 98437792--98437886 Score: 84
Period size: 31 Copynumber: 3.0 Consensus size: 30
98437782 TACTACTAAT
**
98437792 AATAATAAAAAAAGAAAACAATAATATTATATAG
1 AATAATAGTAAAAGAAAA-AATAATA--ATA-AG
* *
98437826 AATAATAGTAAAAGTAATAAATAATAATAAT
1 AATAATAGTAAAAG-AAAAAATAATAATAAG
98437857 AATAATAGTAATAA-AAAATAATAATAATAA
1 AATAATAGTAA-AAGAAAA-AATAATAATAA
98437887 TATAATAACA
Statistics
Matches: 53, Mismatches: 5, Indels: 9
0.79 0.07 0.13
Matches are distributed among these distances:
30 3 0.06
31 23 0.43
32 5 0.09
34 19 0.36
35 3 0.06
ACGTcount: A:0.67, C:0.01, G:0.05, T:0.26
Consensus pattern (30 bp):
AATAATAGTAAAAGAAAAAATAATAATAAG
Found at i:98437855 original size:25 final size:25
Alignment explanation
Indices: 98437826--98437909 Score: 109
Period size: 25 Copynumber: 3.4 Consensus size: 25
98437816 TATTATATAG
* * *
98437826 AATAATAGTAAAAGTAATAAATAAT
1 AATAATAATAATAGTAATAAAAAAT
98437851 AATAATAATAATAGTAATAAAAAAT
1 AATAATAATAATAGTAATAAAAAAT
*
98437876 AATAATAATAATA-TAAT-AACAAT
1 AATAATAATAATAGTAATAAAAAAT
*
98437899 AATAAAAATAA
1 AATAATAATAA
98437910 CATTCTCCTC
Statistics
Matches: 54, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
23 15 0.28
24 4 0.07
25 35 0.65
ACGTcount: A:0.68, C:0.01, G:0.04, T:0.27
Consensus pattern (25 bp):
AATAATAATAATAGTAATAAAAAAT
Found at i:98438872 original size:132 final size:132
Alignment explanation
Indices: 98438634--98439194 Score: 614
Period size: 132 Copynumber: 4.3 Consensus size: 132
98438624 ATATACTCTG
* * ** * * * *
98438634 CTACTGCTGAGAGAGATAAGATCTACAATCTTCGGCCTG-TTCACTGCTACTCAAAGAGATAAGG
1 CTACTGCTTAGGGAGATAAGATCTGTAATCTTCAGCCTGCTCCACTGCTGCTCAAGGAGATAAGG
* * * * * * *
98438698 CTAGTCGCTTACATCTGCTTTCCTACTACCCCGGGAAAATAAGATTCGCCGTCTTTGATTTGCTC
66 CTAGTGGCTTAAATCTGCTTCCCTACTACCTCGGGAAGATAAGATTCGCCGTCTTCGATCTGCTC
98438763 CA
131 CA
*
98438765 CTACTGCTTAGGGAGATAAGATCTGTAATCTTCAGCCTGCTCCAATGCTGCTCAAGGAGATAAGG
1 CTACTGCTTAGGGAGATAAGATCTGTAATCTTCAGCCTGCTCCACTGCTGCTCAAGGAGATAAGG
* * ** * *
98438830 CTGGTGGCTTAAATCTGCTTCCCTACTACCTCGGGAATATAAGATTCGTTGTCTTTGATCTACTC
66 CTAGTGGCTTAAATCTGCTTCCCTACTACCTCGGGAAGATAAGATTCGCCGTCTTCGATCTGCTC
98438895 CA
131 CA
* * ** * *
98438897 CTACTACTTAGGGAGATAAGACCTACAATCTTCAGTCTGCT-CACTGTTGCTC-AGAGAGATAAG
1 CTACTGCTTAGGGAGATAAGATCTGTAATCTTCAGCCTGCTCCACTGCTGCTCAAG-GAGATAAG
* * * *
98438960 TCTAGTGGCTTAAATTTGCTTCCCTACTACCTCGGGAAGATAAGATTCACCATCTTCGAT-TGGC
65 GCTAGTGGCTTAAATCTGCTTCCCTACTACCTCGGGAAGATAAGATTCGCCGTCTTCGATCT-GC
*
98439024 TGCA
129 TCCA
** * *
98439028 CTACTGCTTAGGGAGATAAGATCTGTAATCTTCAGTTTGCTCCACTGCTGCTTAAGGAGATCAGG
1 CTACTGCTTAGGGAGATAAGATCTGTAATCTTCAGCCTGCTCCACTGCTGCTCAAGGAGATAAGG
* * ** ** *
98439093 CTGGTGGCTTAAATCTGC-TCCATTGT-CGCTATATGG-AGATAAGATTTGCCGTCTTCGATCTG
66 CTAGTGGCTTAAATCTGCTTCCCTACTAC-C--TCGGGAAGATAAGATTCGCCGTCTTCGATCTG
*
98439155 TTCCA
128 CTCCA
*
98439160 CTACTGCTTAGGGAGATAAGATCTGTAATTTTCAG
1 CTACTGCTTAGGGAGATAAGATCTGTAATCTTCAG
98439195 TCTACTCTAC
Statistics
Matches: 362, Mismatches: 59, Indels: 17
0.83 0.13 0.04
Matches are distributed among these distances:
130 4 0.01
131 148 0.41
132 204 0.56
133 6 0.02
ACGTcount: A:0.25, C:0.23, G:0.21, T:0.31
Consensus pattern (132 bp):
CTACTGCTTAGGGAGATAAGATCTGTAATCTTCAGCCTGCTCCACTGCTGCTCAAGGAGATAAGG
CTAGTGGCTTAAATCTGCTTCCCTACTACCTCGGGAAGATAAGATTCGCCGTCTTCGATCTGCTC
CA
Found at i:98439137 original size:263 final size:263
Alignment explanation
Indices: 98438619--98439224 Score: 705
Period size: 263 Copynumber: 2.3 Consensus size: 263
98438609 AGATTTGTAG
* ** * * * * * * *
98438619 CTTCGATATACTCTGCTACTGCTGAGAGAGATAAGATCTACAATCTTCGGCCTGTTCACTGCTAC
1 CTTCGATCTACTCCACTACTACTTAGGGAGATAAGATCTACAATCTTCAGTCTGCTCACTGTTAC
* * * *
98438684 TCAAAGAGATAAGGCTAGTCGCTTACATCTGCTTTCCTACTACCCCGGGAAAATAAGATTCGCCG
66 TCAAAGAGATAAGGCTAGTCGCTTAAATCTGCTTCCCTACTACCCCGGGAAAATAAGATTCACCA
* *
98438749 TCTTTGATTTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATCTTCAGCCTGCTCCAATGCT
131 TCTTCGATTGGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATCTTCAGCCTGCTCCAATGCT
* * * *
98438814 GCTCAAGGAGATAAGGCTGGTGGCTTAAATCTGCTTCCCTACTACCTCGGGAATATAAGATTCGT
196 GCTCAAGGAGATAAGGCTGGTGGCTTAAATCTGCTTCCATACTACCTAGGGAAGATAAGATTCGC
*
98438879 TGT
261 CGT
* * *
98438882 CTTTGATCTACTCCACTACTACTTAGGGAGATAAGACCTACAATCTTCAGTCTGCTCACTGTTGC
1 CTTCGATCTACTCCACTACTACTTAGGGAGATAAGATCTACAATCTTCAGTCTGCTCACTGTTAC
* * * * * *
98438947 TCAGAGAGATAAGTCTAGTGGCTTAAATTTGCTTCCCTACTACCTCGGGAAGATAAGATTCACCA
66 TCAAAGAGATAAGGCTAGTCGCTTAAATCTGCTTCCCTACTACCCCGGGAAAATAAGATTCACCA
* ** *
98439012 TCTTCGATTGGCTGCACTACTGCTTAGGGAGATAAGATCTGTAATCTTCAGTTTGCTCCACTGCT
131 TCTTCGATTGGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATCTTCAGCCTGCTCCAATGCT
* * ** *
98439077 GCTTAAGGAGATCAGGCTGGTGGCTTAAATCTGC-TCCATTGT-CGCTATATGG-AGATAAGATT
196 GCTCAAGGAGATAAGGCTGGTGGCTTAAATCTGCTTCCATACTAC-C--TAGGGAAGATAAGATT
*
98439139 TGCCGT
258 CGCCGT
** * ** * * *
98439145 CTTCGATCTGTTCCACTACTGCTTAGGGAGATAAGATCTGTAATTTTCAGTCTACTCTACTGTAA
1 CTTCGATCTACTCCACTACTACTTAGGGAGATAAGATCTACAATCTTCAGTCTGCTC-ACTGTTA
*
98439210 CTTCAAGGAGATAAG
65 C-TCAAAGAGATAAG
98439225 ACTTGTATCT
Statistics
Matches: 285, Mismatches: 53, Indels: 8
0.82 0.15 0.02
Matches are distributed among these distances:
261 1 0.00
262 6 0.02
263 258 0.91
264 9 0.03
265 11 0.04
ACGTcount: A:0.25, C:0.23, G:0.21, T:0.31
Consensus pattern (263 bp):
CTTCGATCTACTCCACTACTACTTAGGGAGATAAGATCTACAATCTTCAGTCTGCTCACTGTTAC
TCAAAGAGATAAGGCTAGTCGCTTAAATCTGCTTCCCTACTACCCCGGGAAAATAAGATTCACCA
TCTTCGATTGGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATCTTCAGCCTGCTCCAATGCT
GCTCAAGGAGATAAGGCTGGTGGCTTAAATCTGCTTCCATACTACCTAGGGAAGATAAGATTCGC
CGT
Found at i:98439288 original size:44 final size:44
Alignment explanation
Indices: 98439199--98439291 Score: 109
Period size: 44 Copynumber: 2.1 Consensus size: 44
98439189 TTTCAGTCTA
* * *
98439199 CTCTACTGTAACTTCAAGGAGATAAGACTTGTATCTTGAACCTG
1 CTCTACTGCAACTTCAAGGAGATAAGACTGGTATCTTAAACCTG
* *
98439243 CTCTACTGCAACTTC-AGGAAGATAAGGCTGGT-TGCTTAAATCTG
1 CTCTACTGCAACTTCAAGG-AGATAAGACTGGTAT-CTTAAACCTG
98439287 CTCTA
1 CTCTA
98439292 TTGCCGCTAC
Statistics
Matches: 42, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
43 4 0.10
44 38 0.90
ACGTcount: A:0.28, C:0.22, G:0.19, T:0.31
Consensus pattern (44 bp):
CTCTACTGCAACTTCAAGGAGATAAGACTGGTATCTTAAACCTG
Found at i:98439354 original size:88 final size:88
Alignment explanation
Indices: 98439040--98439356 Score: 241
Period size: 88 Copynumber: 3.6 Consensus size: 88
98439030 ACTGCTTAGG
* * * * * * * *
98439040 GAGATAAGATCTGTAATCTTC-AGTTTGCTCCACTGCTGCTTAAGGAGATCAGGCTGGTGGCTTA
1 GAGATAAGATTTGTCATCTTCGA-TCTGCTCCACTACTACTTAGGGAGATAAGGCTGGTTGCTTA
* * *
98439104 AATCTGCTCCATTGTCGCTATATG
65 AATCTGCTCTATTGTCGCTACATA
* * * * * *
98439128 GAGATAAGATTTGCCGTCTTCGATCTGTTCCACTACTGCTTAGGGAGATAAGATCT-GTAAT-TT
1 GAGATAAGATTTGTCATCTTCGATCTGCTCCACTACTACTTAGGGAGATAAG-GCTGGT--TGCT
* * * * ** *
98439191 TCAGTCTACTCTACTGTAACTTCA-A
63 TAAATCTGCTCTATTGTCGCTACATA
* * * * * *
98439216 GGAGATAAGACTTGT-ATCTT-GAACCTGCTCTACTGCAACTTCAGGAAGATAAGGCTGGTTGCT
1 -GAGATAAGATTTGTCATCTTCG-ATCTGCTCCACTACTACTT-AGGGAGATAAGGCTGGTTGCT
*
98439279 TAAATCTGCTCTATTGCCGCTACATA
63 TAAATCTGCTCTATTGTCGCTACATA
*
98439305 GAGATAAGATTTGTCTTCTTCGATCTGCTCCACTACTACTTAGGGAGATAAG
1 GAGATAAGATTTGTCATCTTCGATCTGCTCCACTACTACTTAGGGAGATAAG
98439357 ATCTGTGAAT
Statistics
Matches: 168, Mismatches: 49, Indels: 24
0.70 0.20 0.10
Matches are distributed among these distances:
87 2 0.01
88 102 0.61
89 63 0.38
90 1 0.01
ACGTcount: A:0.26, C:0.21, G:0.21, T:0.33
Consensus pattern (88 bp):
GAGATAAGATTTGTCATCTTCGATCTGCTCCACTACTACTTAGGGAGATAAGGCTGGTTGCTTAA
ATCTGCTCTATTGTCGCTACATA
Found at i:98439748 original size:46 final size:46
Alignment explanation
Indices: 98439706--98439793 Score: 113
Period size: 46 Copynumber: 1.9 Consensus size: 46
98439696 ATTTGTAGTT
* * *
98439706 TCGTCTATCTATCCCACTGCAACTAAGGGGTATAGGATTTGTATCA
1 TCGTCAATCTATCCCACTACAACTAAGGGATATAGGATTTGTATCA
* * * *
98439752 TCTTCAATTTATCCCACTATAACTCAGGGATATAGGATTTGT
1 TCGTCAATCTATCCCACTACAACTAAGGGATATAGGATTTGT
98439794 GGCTTCTTCA
Statistics
Matches: 35, Mismatches: 7, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
46 35 1.00
ACGTcount: A:0.27, C:0.20, G:0.17, T:0.35
Consensus pattern (46 bp):
TCGTCAATCTATCCCACTACAACTAAGGGATATAGGATTTGTATCA
Found at i:98439802 original size:46 final size:46
Alignment explanation
Indices: 98439715--98439805 Score: 119
Period size: 46 Copynumber: 2.0 Consensus size: 46
98439705 TTCGTCTATC
* * *
98439715 TATCCCACTGCAACTAAGGGGTATAGGATTTGTATCATCTTCAATT
1 TATCCCACTACAACTAAGGGATATAGGATTTGTAGCATCTTCAATT
* * * *
98439761 TATCCCACTATAACTCAGGGATATAGGATTTGTGGCTTCTTCAAT
1 TATCCCACTACAACTAAGGGATATAGGATTTGTAGCATCTTCAAT
98439806 CAATTGATCT
Statistics
Matches: 38, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
46 38 1.00
ACGTcount: A:0.27, C:0.20, G:0.18, T:0.35
Consensus pattern (46 bp):
TATCCCACTACAACTAAGGGATATAGGATTTGTAGCATCTTCAATT
Found at i:98440593 original size:13 final size:13
Alignment explanation
Indices: 98440575--98440599 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
98440565 GGCCTCTCTT
98440575 TTTTCTTTTTTTC
1 TTTTCTTTTTTTC
98440588 TTTTCTTTTTTT
1 TTTTCTTTTTTT
98440600 GTGTTTTTTC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.00, C:0.12, G:0.00, T:0.88
Consensus pattern (13 bp):
TTTTCTTTTTTTC
Found at i:98444453 original size:228 final size:228
Alignment explanation
Indices: 98444045--98444465 Score: 695
Period size: 228 Copynumber: 1.8 Consensus size: 228
98444035 CAAAAAGAAA
* *
98444045 AAAAAAGAAAGAAAGGCGTTGATTTTGAATTCAATTCTATTAGAACAACTTTTCTAGAAAACAAA
1 AAAAAAGAAAGAAAGGCGTTGATTCTGAATACAATTCTATTAGAACAACTTTTCTAGAAAACAAA
* * *
98444110 TTCATTTACATAAAACGAATTACATATGAGGCCCTACCTTCATATTCCGGGCGAAGACACCGATC
66 TTCATTTACATAAAACGAATTACATATGAGGCACTACCTTCATATTCCAGGCGAAGACACCAATC
*
98444175 CCTTTCCTTCTTAAAAGTCAAATCTCACAAACTTTCAATAGATGTCTCCACTAGCTCTTTTTTAT
131 CCTTTCCTTCTTAAAAGTCAAATCTCACAAACTTTCAATAGATGTCTCCACTAGCTCCTTTTTAT
98444240 AAAAGATGAAATGCTAATGCATGGAATGGATAC
196 AAAAGATGAAATGCTAATGCATGGAATGGATAC
*
98444273 AAAAAA-AAAGAAAAGGCGTTGATTCTGAATACAATTCTATTAGAACAACTTTTCTAGAAAATAA
1 AAAAAAGAAAG-AAAGGCGTTGATTCTGAATACAATTCTATTAGAACAACTTTTCTAGAAAACAA
* * *
98444337 ATTTC-TTTACATAAAACGAATTACATATGCGGCACTGCCTTCATATTCCAGGTGAAGACACCAA
65 A-TTCATTTACATAAAACGAATTACATATGAGGCACTACCTTCATATTCCAGGCGAAGACACCAA
*
98444401 TCCCTTTCCTTCTTAAAAGTCAAATCTCGCAAAC-TTCTAATAGATGTCTCCACTAGCTCCTTTT
129 TCCCTTTCCTTCTTAAAAGTCAAATCTCACAAACTTTC-AATAGATGTCTCCACTAGCTCCTTTT
98444465 T
193 T
98444466 GCTTGATCTA
Statistics
Matches: 179, Mismatches: 11, Indels: 6
0.91 0.06 0.03
Matches are distributed among these distances:
227 7 0.04
228 169 0.94
229 3 0.02
ACGTcount: A:0.37, C:0.20, G:0.13, T:0.30
Consensus pattern (228 bp):
AAAAAAGAAAGAAAGGCGTTGATTCTGAATACAATTCTATTAGAACAACTTTTCTAGAAAACAAA
TTCATTTACATAAAACGAATTACATATGAGGCACTACCTTCATATTCCAGGCGAAGACACCAATC
CCTTTCCTTCTTAAAAGTCAAATCTCACAAACTTTCAATAGATGTCTCCACTAGCTCCTTTTTAT
AAAAGATGAAATGCTAATGCATGGAATGGATAC
Found at i:98446199 original size:3 final size:3
Alignment explanation
Indices: 98446191--98446221 Score: 53
Period size: 3 Copynumber: 10.0 Consensus size: 3
98446181 AAATAGCTTA
98446191 AAT AAT AAT AAT AAT AAT AAT AAT AAGT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AA-T AAT
98446222 CTAAAGCTTA
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
3 24 0.89
4 3 0.11
ACGTcount: A:0.65, C:0.00, G:0.03, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:98446773 original size:18 final size:19
Alignment explanation
Indices: 98446723--98446775 Score: 65
Period size: 18 Copynumber: 2.8 Consensus size: 19
98446713 TTTTCGTATG
98446723 TAAAATAAACAAAATAAAAT
1 TAAAATAAAC-AAATAAAAT
* *
98446743 TAAAAGATA-AAATAAAA-
1 TAAAATAAACAAATAAAAT
98446760 TAAAATAAACAAATAA
1 TAAAATAAACAAATAA
98446776 CTTAAAACGA
Statistics
Matches: 28, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
17 7 0.25
18 14 0.50
20 7 0.25
ACGTcount: A:0.75, C:0.04, G:0.02, T:0.19
Consensus pattern (19 bp):
TAAAATAAACAAATAAAAT
Found at i:98446775 original size:23 final size:23
Alignment explanation
Indices: 98446724--98446775 Score: 63
Period size: 23 Copynumber: 2.3 Consensus size: 23
98446714 TTTCGTATGT
98446724 AAAAT-AAACAAAATAAAATTAA
1 AAAATAAAACAAAATAAAATTAA
* *
98446746 AAGATAAAATAAAATAAAA-TAA
1 AAAATAAAACAAAATAAAATTAA
98446768 ACAAATAA
1 A-AAATAA
98446776 CTTAAAACGA
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
22 8 0.32
23 17 0.68
ACGTcount: A:0.77, C:0.04, G:0.02, T:0.17
Consensus pattern (23 bp):
AAAATAAAACAAAATAAAATTAA
Found at i:98446781 original size:18 final size:18
Alignment explanation
Indices: 98446723--98446782 Score: 59
Period size: 18 Copynumber: 3.3 Consensus size: 18
98446713 TTTTCGTATG
98446723 TAAAATAAACAAAATAAAAT
1 TAAAATAAAC-AAAT-AAAT
* * *
98446743 TAAAAGATA-AAATAAAA
1 TAAAATAAACAAATAAAT
*
98446760 TAAAATAAACAAATAACT
1 TAAAATAAACAAATAAAT
98446778 TAAAA
1 TAAAA
98446783 CGAGAATAGA
Statistics
Matches: 32, Mismatches: 7, Indels: 4
0.74 0.16 0.09
Matches are distributed among these distances:
17 10 0.31
18 15 0.47
20 7 0.22
ACGTcount: A:0.73, C:0.05, G:0.02, T:0.20
Consensus pattern (18 bp):
TAAAATAAACAAATAAAT
Found at i:98446970 original size:15 final size:15
Alignment explanation
Indices: 98446950--98446979 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
98446940 ATTGCCTTTT
98446950 TCTTTTTGCAGGCAA
1 TCTTTTTGCAGGCAA
98446965 TCTTTTTGCAGGCAA
1 TCTTTTTGCAGGCAA
98446980 GTGAGGTGAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.20, C:0.20, G:0.20, T:0.40
Consensus pattern (15 bp):
TCTTTTTGCAGGCAA
Found at i:98457355 original size:47 final size:48
Alignment explanation
Indices: 98457285--98457557 Score: 251
Period size: 46 Copynumber: 5.8 Consensus size: 48
98457275 AGGTAAGGTA
*
98457285 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCATATCTC-AAG
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATCTCGAAG
* * * * *
98457332 TCGATGCCATGTCCCAAACATGGTCTTACATTGACT-ATCATCTCGTAG
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCA-CATCTCGAAG
* * *
98457380 CCGATG-CATGTCCCAGACAT-GTCTTACACTGGCTTACGTCTCGAGG
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATCTCGAAG
* * * *
98457426 CCGATG-CATGTCCTAGACAT-GTCTTACACTAGCTCCCGTCTC-AATG
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATCTCGAA-G
* * * * **
98457472 CCGATGCCATGTCCCAGACATGGTCTTAAACTGGTTCTCATAAT-GTGG
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACAT-CTCGAAG
* * *
98457520 CTGATG-CATGTCCTAGACAT-GTCTTACACTAGCTCACA
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACA
98457558 CTCAAATGAC
Statistics
Matches: 185, Mismatches: 33, Indels: 17
0.79 0.14 0.07
Matches are distributed among these distances:
45 1 0.01
46 79 0.43
47 77 0.42
48 27 0.15
49 1 0.01
ACGTcount: A:0.23, C:0.29, G:0.19, T:0.28
Consensus pattern (48 bp):
CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATCTCGAAG
Found at i:98457482 original size:140 final size:141
Alignment explanation
Indices: 98457285--98457549 Score: 347
Period size: 140 Copynumber: 1.9 Consensus size: 141
98457275 AGGTAAGGTA
* * *
98457285 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCATATCTCAAGTCGATGCCATGTCCCAAA
1 CCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATCTCAAGCCGATGCCATGTCCCAAA
* * *
98457350 CATGGTCTTACATTGACTATCAT-CTCGTAGCCGATGCATGTCCCAGACATGTCTTACACTGGCT
66 CATGGTCTTAAACTGACTATCATAAT-GTAGCCGATGCATGTCCCAGACATGTCTTACACTGGCT
98457414 TACGTCTCGAGG
130 TACGTCTCGAGG
* * * *
98457426 CCGATG-CATGTCCTAGACAT-GTCTTACACTAGCTCCCGTCTCAATGCCGATGCCATGTCCCAG
1 CCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATCTCAA-GCCGATGCCATGTCCCAA
** * * * *
98457489 ACATGGTCTTAAACTGGTTCTCATAATGTGGCTGATGCATGTCCTAGACATGTCTTACACT
65 ACATGGTCTTAAACTGACTATCATAATGTAGCCGATGCATGTCCCAGACATGTCTTACACT
98457550 AGCTCACACT
Statistics
Matches: 106, Mismatches: 16, Indels: 5
0.83 0.13 0.04
Matches are distributed among these distances:
139 20 0.19
140 79 0.75
141 7 0.07
ACGTcount: A:0.23, C:0.29, G:0.20, T:0.29
Consensus pattern (141 bp):
CCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATCTCAAGCCGATGCCATGTCCCAAA
CATGGTCTTAAACTGACTATCATAATGTAGCCGATGCATGTCCCAGACATGTCTTACACTGGCTT
ACGTCTCGAGG
Found at i:98457531 original size:94 final size:92
Alignment explanation
Indices: 98457379--98457554 Score: 250
Period size: 94 Copynumber: 1.9 Consensus size: 92
98457369 TCATCTCGTA
*
98457379 GCCGATGCATGTCCCAGACATGTCTTACACTGGCTTACGTCTCGAGGCCGATGCATGTCCTAGAC
1 GCCGATGCATGTCCCAGACATGTCTTAAACTGGCTTACGTCTCGAGGCCGATGCATGTCCTAGAC
98457444 ATGTCTTACACTAGCTCCCGTCTCAAT
66 ATGTCTTACACTAGCTCCCGTCTCAAT
* * *
98457471 GCCGATGCCATGTCCCAGACATGGTCTTAAACTGG-TT-C-TCATAATGTGGCTGATGCATGTCC
1 GCCGATG-CATGTCCCAGACAT-GTCTTAAACTGGCTTACGTC-T--CGAGGCCGATGCATGTCC
98457533 TAGACATGTCTTACACTAGCTC
61 TAGACATGTCTTACACTAGCTC
98457555 ACACTCAAAT
Statistics
Matches: 75, Mismatches: 4, Indels: 8
0.86 0.05 0.09
Matches are distributed among these distances:
91 2 0.03
92 9 0.12
93 16 0.21
94 48 0.64
ACGTcount: A:0.22, C:0.29, G:0.21, T:0.28
Consensus pattern (92 bp):
GCCGATGCATGTCCCAGACATGTCTTAAACTGGCTTACGTCTCGAGGCCGATGCATGTCCTAGAC
ATGTCTTACACTAGCTCCCGTCTCAAT
Found at i:98463318 original size:47 final size:47
Alignment explanation
Indices: 98463264--98463533 Score: 207
Period size: 47 Copynumber: 5.8 Consensus size: 47
98463254 GGTAAGGTGC
*
98463264 CGATGCCATATCCCAGACATGGTCTTACACTGGCTCATATCTTCA-GT
1 CGATGCCATGTCCCAGACAT-GTCTTACACTGGCTCATATCTTCAGGT
* * * *
98463311 CGATGCCATGTACCAAACATGGTCTTACACTGGCT-ATTATCTTGTA-GC
1 CGATGCCATGTCCCAGACAT-GTCTTACACTGGCTCA-TATCTT-CAGGT
* ** * *
98463359 CGATG-CATGTCCCAGACATGTCTTACACTGGCTTACGTCTTGAGGA
1 CGATGCCATGTCCCAGACATGTCTTACACTGGCTCATATCTTCAGGT
* * *
98463405 CGATG-CATGTCCCAGACATGTCTTACACTAGCTC-TCGTC-TCAATGT
1 CGATGCCATGTCCCAGACATGTCTTACACTGGCTCAT-ATCTTC-AGGT
* * ** ** *
98463451 CGATGCCATGTCCCAGACATCATCTTAAACTGGCTC-TCATAATGTGGC
1 CGATGCCATGTCCCAGACAT-GTCTTACACTGGCTCAT-ATCTTCAGGT
* *
98463499 CGATG-CATGTCCGAGACATGTCTTACACTAGCTCA
1 CGATGCCATGTCCCAGACATGTCTTACACTGGCTCA
98463534 CACTCAAATG
Statistics
Matches: 183, Mismatches: 30, Indels: 20
0.79 0.13 0.09
Matches are distributed among these distances:
45 2 0.01
46 74 0.40
47 78 0.43
48 28 0.15
49 1 0.01
ACGTcount: A:0.24, C:0.28, G:0.19, T:0.29
Consensus pattern (47 bp):
CGATGCCATGTCCCAGACATGTCTTACACTGGCTCATATCTTCAGGT
Found at i:98463424 original size:93 final size:94
Alignment explanation
Indices: 98463262--98463433 Score: 233
Period size: 93 Copynumber: 1.8 Consensus size: 94
98463252 TAGGTAAGGT
* *
98463262 GCCGATGCCATATCCCAGACATGGTCTTACACTGGCTCATATCTTCAGTCGATGCCATGTACCAA
1 GCCGATGCCATATCCCAGACATGGTCTTACACTGGCTCACATCTTCAGACGATGCCATGTACCAA
98463327 ACATGGTCTTACACTGGCTATTATCTTGTA
66 ACAT-GTCTTACACTGGCTATTATCTTGTA
* * * * *
98463357 GCCGATG-CATGTCCCAGACAT-GTCTTACACTGGCTTACGTCTTGAGGACGATG-CATGTCCCA
1 GCCGATGCCATATCCCAGACATGGTCTTACACTGGCTCACATCTTCA-GACGATGCCATGTACCA
*
98463419 GACATGTCTTACACT
65 AACATGTCTTACACT
98463434 AGCTCTCGTC
Statistics
Matches: 68, Mismatches: 8, Indels: 5
0.84 0.10 0.06
Matches are distributed among these distances:
92 10 0.15
93 32 0.47
94 19 0.28
95 7 0.10
ACGTcount: A:0.23, C:0.28, G:0.20, T:0.29
Consensus pattern (94 bp):
GCCGATGCCATATCCCAGACATGGTCTTACACTGGCTCACATCTTCAGACGATGCCATGTACCAA
ACATGTCTTACACTGGCTATTATCTTGTA
Found at i:98463526 original size:140 final size:141
Alignment explanation
Indices: 98463264--98463527 Score: 347
Period size: 140 Copynumber: 1.9 Consensus size: 141
98463254 GGTAAGGTGC
*
98463264 CGATGCCATATCCCAGACATGGTCTTACACTGGCTCATATCTTCAGTCGATGCCATGTACCAAAC
1 CGATGCCATATCCCAGACATGGTCTTACACTAGCTCATATCTTCAGTCGATGCCATGTACCAAAC
** * * **
98463329 ATGGTCTTACACTGGCTATTATCTTGTAGCCGATGCATGTCCCAGACATGTCTTACACTGGCTTA
66 ATCATCTTAAACTGGCTATCATAATGTAGCCGATGCATGTCCCAGACATGTCTTACACTGGCTTA
98463394 CGTCTTGAGGA
131 CGTCTTGAGGA
* * *
98463405 CGATG-CATGTCCCAGACAT-GTCTTACACTAGCTC-TCGTC-TCAATGTCGATGCCATGTCCCA
1 CGATGCCATATCCCAGACATGGTCTTACACTAGCTCAT-ATCTTC-A-GTCGATGCCATGTACCA
* * * *
98463466 GACATCATCTTAAACTGGCTCTCATAATGTGGCCGATGCATGTCCGAGACATGTCTTACACT
63 AACATCATCTTAAACTGGCTATCATAATGTAGCCGATGCATGTCCCAGACATGTCTTACACT
98463528 AGCTCACACT
Statistics
Matches: 106, Mismatches: 14, Indels: 7
0.83 0.11 0.06
Matches are distributed among these distances:
138 3 0.03
139 17 0.16
140 81 0.76
141 5 0.05
ACGTcount: A:0.23, C:0.28, G:0.19, T:0.29
Consensus pattern (141 bp):
CGATGCCATATCCCAGACATGGTCTTACACTAGCTCATATCTTCAGTCGATGCCATGTACCAAAC
ATCATCTTAAACTGGCTATCATAATGTAGCCGATGCATGTCCCAGACATGTCTTACACTGGCTTA
CGTCTTGAGGA
Found at i:98472291 original size:45 final size:45
Alignment explanation
Indices: 98472226--98472316 Score: 164
Period size: 45 Copynumber: 2.0 Consensus size: 45
98472216 ATGTACAAAG
98472226 ATATATAATATTAATATAAGCATAATATCAAAAGAAATAGAGAAA
1 ATATATAATATTAATATAAGCATAATATCAAAAGAAATAGAGAAA
* *
98472271 ATATATAATATTAATGTAAGCATAATATCAAAAGAAATGGAGAAA
1 ATATATAATATTAATATAAGCATAATATCAAAAGAAATAGAGAAA
98472316 A
1 A
98472317 GCGAAACTAC
Statistics
Matches: 44, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
45 44 1.00
ACGTcount: A:0.58, C:0.04, G:0.11, T:0.26
Consensus pattern (45 bp):
ATATATAATATTAATATAAGCATAATATCAAAAGAAATAGAGAAA
Found at i:98472552 original size:12 final size:11
Alignment explanation
Indices: 98472515--98472568 Score: 56
Period size: 11 Copynumber: 4.7 Consensus size: 11
98472505 TCAAAAATAA
*
98472515 ATAAAAGAAAG
1 ATAAAATAAAG
98472526 ATAAAATGAAA-
1 ATAAAAT-AAAG
98472537 ATAAAGATAAAG
1 ATAAA-ATAAAG
*
98472549 ATAAAAATAAAA
1 AT-AAAATAAAG
98472561 ATAAAATA
1 ATAAAATA
98472569 GATGGACTCA
Statistics
Matches: 37, Mismatches: 2, Indels: 8
0.79 0.04 0.17
Matches are distributed among these distances:
11 20 0.54
12 14 0.38
13 3 0.08
ACGTcount: A:0.74, C:0.00, G:0.09, T:0.17
Consensus pattern (11 bp):
ATAAAATAAAG
Found at i:98472557 original size:18 final size:17
Alignment explanation
Indices: 98472513--98472568 Score: 69
Period size: 17 Copynumber: 3.3 Consensus size: 17
98472503 ATTCAAAAAT
*
98472513 AAAT-AAAAGAAAGATA
1 AAATAAAAATAAAGATA
*
98472529 AAATGAAAATAAAGATA
1 AAATAAAAATAAAGATA
*
98472546 AAGATAAAAATAAAAATA
1 AA-ATAAAAATAAAGATA
98472564 AAATA
1 AAATA
98472569 GATGGACTCA
Statistics
Matches: 35, Mismatches: 3, Indels: 3
0.85 0.07 0.07
Matches are distributed among these distances:
16 4 0.11
17 16 0.46
18 15 0.43
ACGTcount: A:0.75, C:0.00, G:0.09, T:0.16
Consensus pattern (17 bp):
AAATAAAAATAAAGATA
Found at i:98472566 original size:6 final size:6
Alignment explanation
Indices: 98472528--98472566 Score: 51
Period size: 6 Copynumber: 6.5 Consensus size: 6
98472518 AAAGAAAGAT
* * *
98472528 AAAATG AAAATA AAGATA AAGATA AAAATA AAAATA AAA
1 AAAATA AAAATA AAAATA AAAATA AAAATA AAAATA AAA
98472567 TAGATGGACT
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
6 30 1.00
ACGTcount: A:0.77, C:0.00, G:0.08, T:0.15
Consensus pattern (6 bp):
AAAATA
Found at i:98476473 original size:11 final size:11
Alignment explanation
Indices: 98476457--98476481 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
98476447 ATTCTCGAGC
98476457 CATTTGGAAAT
1 CATTTGGAAAT
98476468 CATTTGGAAAT
1 CATTTGGAAAT
98476479 CAT
1 CAT
98476482 CTTTGCCAAC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.36, C:0.12, G:0.16, T:0.36
Consensus pattern (11 bp):
CATTTGGAAAT
Found at i:98479105 original size:30 final size:30
Alignment explanation
Indices: 98479052--98479109 Score: 82
Period size: 30 Copynumber: 1.9 Consensus size: 30
98479042 CACGGCAATG
*
98479052 ACACACGGGCATGTGGTCTACCCGTGTGTC
1 ACACACGGGCATGTGGGCTACCCGTGTGTC
*
98479082 ACACACGGGCGTGTGGAGC-ACCCGTGTG
1 ACACACGGGCATGTGG-GCTACCCGTGTG
98479110 GAAGTGCCTA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
30 24 0.96
31 1 0.04
ACGTcount: A:0.17, C:0.29, G:0.34, T:0.19
Consensus pattern (30 bp):
ACACACGGGCATGTGGGCTACCCGTGTGTC
Found at i:98483730 original size:11 final size:11
Alignment explanation
Indices: 98483702--98483733 Score: 50
Period size: 10 Copynumber: 3.1 Consensus size: 11
98483692 TGACCAACTA
98483702 TATT-TTATTT
1 TATTATTATTT
98483712 TA-TATTATTT
1 TATTATTATTT
98483722 TATTATTATTT
1 TATTATTATTT
98483733 T
1 T
98483734 TCACTATCAA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
9 1 0.05
10 10 0.50
11 9 0.45
ACGTcount: A:0.25, C:0.00, G:0.00, T:0.75
Consensus pattern (11 bp):
TATTATTATTT
Found at i:98485620 original size:86 final size:84
Alignment explanation
Indices: 98485467--98485622 Score: 192
Period size: 86 Copynumber: 1.8 Consensus size: 84
98485457 ATATCGCACA
* * * *
98485467 ATGCCAACGTCCCAGACGTGGCCTTACATGTAATCATATATCGATGCCACTGTCCTAGACAGGGT
1 ATGCCAACGTCCCAGACATGGCCTTACATGTAAACATATATCGATGCCACTGTACTAGACAGAGT
98485532 CTTACACGAAACAAATACG
66 CTTACACGAAACAAATACG
* *
98485551 ATGCCAATGTCCCAGACATGGTCTTAC-TCGTAACCACATATATCGATGCCAAC-GTACTAGAC-
1 ATGCCAACGTCCCAGACATGGCCTTACAT-GTAA--ACATATATCGATGCC-ACTGTACTAGACA
98485613 GTAGTCTTAC
62 G-AGTCTTAC
98485623 TTGTACACAT
Statistics
Matches: 61, Mismatches: 6, Indels: 8
0.81 0.08 0.11
Matches are distributed among these distances:
83 1 0.02
84 28 0.46
85 1 0.02
86 29 0.48
87 2 0.03
ACGTcount: A:0.30, C:0.28, G:0.18, T:0.24
Consensus pattern (84 bp):
ATGCCAACGTCCCAGACATGGCCTTACATGTAAACATATATCGATGCCACTGTACTAGACAGAGT
CTTACACGAAACAAATACG
Found at i:98485676 original size:56 final size:56
Alignment explanation
Indices: 98485590--98485695 Score: 176
Period size: 56 Copynumber: 1.9 Consensus size: 56
98485580 GTAACCACAT
* *
98485590 ATATCGATGCCAACGTACTAGACGTAGTCTTACTTGTACACATATATCGAAATCAC
1 ATATCGATGCCAACGTACTAAACGTAGTCTTACTCGTACACATATATCGAAATCAC
* *
98485646 ATATCGATGCCAACGTATTAAACGTGGTCTTACTCGTACACATATATCGA
1 ATATCGATGCCAACGTACTAAACGTAGTCTTACTCGTACACATATATCGA
98485696 TGCCATGGTC
Statistics
Matches: 46, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
56 46 1.00
ACGTcount: A:0.33, C:0.23, G:0.15, T:0.29
Consensus pattern (56 bp):
ATATCGATGCCAACGTACTAAACGTAGTCTTACTCGTACACATATATCGAAATCAC
Found at i:98488538 original size:49 final size:49
Alignment explanation
Indices: 98488466--98488564 Score: 198
Period size: 49 Copynumber: 2.0 Consensus size: 49
98488456 AAATGACGTT
98488466 TTAGGATGACATATTAATGCATCATGAAGCATAGATGTACAAAATATTC
1 TTAGGATGACATATTAATGCATCATGAAGCATAGATGTACAAAATATTC
98488515 TTAGGATGACATATTAATGCATCATGAAGCATAGATGTACAAAATATTC
1 TTAGGATGACATATTAATGCATCATGAAGCATAGATGTACAAAATATTC
98488564 T
1 T
98488565 AACATTTTCA
Statistics
Matches: 50, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
49 50 1.00
ACGTcount: A:0.40, C:0.12, G:0.16, T:0.31
Consensus pattern (49 bp):
TTAGGATGACATATTAATGCATCATGAAGCATAGATGTACAAAATATTC
Found at i:98489308 original size:22 final size:21
Alignment explanation
Indices: 98489278--98489324 Score: 58
Period size: 22 Copynumber: 2.2 Consensus size: 21
98489268 TACAAATTAA
98489278 ATCTCCAAGATTACAAGATCAT
1 ATCTCCAAGATTAC-AGATCAT
* * *
98489300 ATCTTCAAGATTGCATATCAT
1 ATCTCCAAGATTACAGATCAT
98489321 ATCT
1 ATCT
98489325 AAGATTGTAT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
21 10 0.45
22 12 0.55
ACGTcount: A:0.36, C:0.21, G:0.09, T:0.34
Consensus pattern (21 bp):
ATCTCCAAGATTACAGATCAT
Found at i:98489330 original size:19 final size:19
Alignment explanation
Indices: 98489295--98489372 Score: 117
Period size: 17 Copynumber: 4.2 Consensus size: 19
98489285 AGATTACAAG
98489295 ATCATATCTTCAAGATTGCAT
1 ATCATATC-T-AAGATTGCAT
98489316 ATCATATCTAAGATTG--T
1 ATCATATCTAAGATTGCAT
98489333 ATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGCAT
98489352 ATCATAT-TAAGATTGCAT
1 ATCATATCTAAGATTGCAT
98489370 ATC
1 ATC
98489373 CTTAAAGATT
Statistics
Matches: 55, Mismatches: 0, Indels: 7
0.89 0.00 0.11
Matches are distributed among these distances:
17 17 0.31
18 14 0.25
19 15 0.27
20 1 0.02
21 8 0.15
ACGTcount: A:0.36, C:0.15, G:0.10, T:0.38
Consensus pattern (19 bp):
ATCATATCTAAGATTGCAT
Found at i:98489350 original size:36 final size:37
Alignment explanation
Indices: 98489295--98489366 Score: 121
Period size: 36 Copynumber: 2.0 Consensus size: 37
98489285 AGATTACAAG
98489295 ATCATATCTTCAAGATTGCATATCATATCTAAGATTGT
1 ATCATATCTTCAAGATTGCATATCATAT-TAAGATTGT
98489333 ATCATATC-T-AAGATTGCATATCATATTAAGATTG
1 ATCATATCTTCAAGATTGCATATCATATTAAGATTG
98489367 CATATCCTTA
Statistics
Matches: 34, Mismatches: 0, Indels: 3
0.92 0.00 0.08
Matches are distributed among these distances:
35 8 0.24
36 17 0.50
37 1 0.03
38 8 0.24
ACGTcount: A:0.36, C:0.14, G:0.11, T:0.39
Consensus pattern (37 bp):
ATCATATCTTCAAGATTGCATATCATATTAAGATTGT
Found at i:98490104 original size:132 final size:132
Alignment explanation
Indices: 98489950--98490924 Score: 1540
Period size: 132 Copynumber: 7.4 Consensus size: 132
98489940 ATGGAGATGC
* ** *
98489950 CAGATCTGTTATCTTCGATTTGTTCCCTATAAACACAACGATGCCAAATTTGCTATCTTCAACTT
1 CAGATCTGCTATCTTCGATTTGTTCCCTATAAACACAGGGATGCCAAATCTGCTATCTTCAACTT
* * *
98490015 GTTCCCTATAAACACAGGGATGCCATGCTGAAATCTTCGATCTGCTTTGCTATAAGCATAGGAAT
66 GTTCCCTATAAACACAGGGATGCCATGCTGAAATCTTCGATCTGCTTTGCTGTAATCACAGGAAT
98490080 GT
131 GT
*
98490082 CAGATCTGCTATCTTTGATTTGTTCCCTATAAACACAGGGATGCCAAATCTGCTATCTTCAACTT
1 CAGATCTGCTATCTTCGATTTGTTCCCTATAAACACAGGGATGCCAAATCTGCTATCTTCAACTT
* *
98490147 GTTCCCCATAAACACAGGGAAGCCATGCTGAAATCTTCGATCTG-TTTCGCTGTAATCACAGGAA
66 GTTCCCTATAAACACAGGGATGCCATGCTGAAATCTTCGATCTGCTTT-GCTGTAATCACAGGAA
98490211 TGT
130 TGT
* * * *
98490214 CAGATCTACTATCTTCGATTTGTTCCTTATAAACACAGGGATGCCAAATCTACTATCTTTAACTT
1 CAGATCTGCTATCTTCGATTTGTTCCCTATAAACACAGGGATGCCAAATCTGCTATCTTCAACTT
* *
98490279 GTTCCCTATAAACACAGGGATGCCATGCTGAAATCTTTGATCTGCTTCGCTGTAATCACAGGAAT
66 GTTCCCTATAAACACAGGGATGCCATGCTGAAATCTTCGATCTGCTTTGCTGTAATCACAGGAAT
98490344 GT
131 GT
* * *
98490346 CAGACCTGCTATCTTCGATTTATTCCCTATAAACACAGGGATGCCAAATCTGCTATTTTCAACTT
1 CAGATCTGCTATCTTCGATTTGTTCCCTATAAACACAGGGATGCCAAATCTGCTATCTTCAACTT
* * * * *
98490411 GTTCCCTATAAACACAGGGATGCCATGCTGAAATCTTCGATTTG-TTTCCCTGTAATAACAAGAG
66 GTTCCCTATAAACACAGGGATGCCATGCTGAAATCTTCGATCTGCTTT-GCTGTAATCACAGGAA
98490475 TGT
130 TGT
* * *
98490478 TAGATATGCTATCTTTGATTTGTTCCCTATAAACACAGGGATGCCAAATCTGCTATCTTCAACTT
1 CAGATCTGCTATCTTCGATTTGTTCCCTATAAACACAGGGATGCCAAATCTGCTATCTTCAACTT
* * * *
98490543 GTTCCCTATAAACACAGGGATGCCATGCTAAAATCTTCGATCTGCTTTGCTATAAGCATAGGAAT
66 GTTCCCTATAAACACAGGGATGCCATGCTGAAATCTTCGATCTGCTTTGCTGTAATCACAGGAAT
98490608 GT
131 GT
*
98490610 CAGATCTGCTATCTTCGATTTGTTCCCTATAAACATAGGGATGCCAAATCTGCTATCTTCAACTT
1 CAGATCTGCTATCTTCGATTTGTTCCCTATAAACACAGGGATGCCAAATCTGCTATCTTCAACTT
* *
98490675 GTTCCCCATAAACACAGGGATGCCATGCTGAAATCTTCGATCTGCTTCGCTGTAATCACAGGAAT
66 GTTCCCTATAAACACAGGGATGCCATGCTGAAATCTTCGATCTGCTTTGCTGTAATCACAGGAAT
98490740 GT
131 GT
* *
98490742 CAGATATGCTATCTTCGATTTGTTCCTTATAAACACAGGGATGCCAAATCTGCTATCTTCAACTT
1 CAGATCTGCTATCTTCGATTTGTTCCCTATAAACACAGGGATGCCAAATCTGCTATCTTCAACTT
* * * * *
98490807 GTTCCCTATAAACACAGGGATGCTATGCTGAAATCTTCGATCTGCTTCGCTTTAAGCACAGGAGT
66 GTTCCCTATAAACACAGGGATGCCATGCTGAAATCTTCGATCTGCTTTGCTGTAATCACAGGAAT
98490872 GT
131 GT
*
98490874 CAGATCTGCTATCTTCGATCTGTTCCCTATAAACACAGGGATGCCAAATCT
1 CAGATCTGCTATCTTCGATTTGTTCCCTATAAACACAGGGATGCCAAATCT
98490925 TATTTCTCTG
Statistics
Matches: 770, Mismatches: 69, Indels: 8
0.91 0.08 0.01
Matches are distributed among these distances:
131 5 0.01
132 760 0.99
133 5 0.01
ACGTcount: A:0.28, C:0.23, G:0.17, T:0.32
Consensus pattern (132 bp):
CAGATCTGCTATCTTCGATTTGTTCCCTATAAACACAGGGATGCCAAATCTGCTATCTTCAACTT
GTTCCCTATAAACACAGGGATGCCATGCTGAAATCTTCGATCTGCTTTGCTGTAATCACAGGAAT
GT
Found at i:98497470 original size:22 final size:21
Alignment explanation
Indices: 98497440--98497524 Score: 70
Period size: 19 Copynumber: 4.2 Consensus size: 21
98497430 TACAAATTAA
98497440 ATCTCCAAGATTACAAGATCAT
1 ATCTCCAAGATTAC-AGATCAT
* * *
98497462 ATCTTCAAGATTGCATATCAT
1 ATCTCCAAGATTACAGATCAT
* *
98497483 ATCT--AAGATTGCATATCAT
1 ATCTCCAAGATTACAGATCAT
* *
98497502 ATCT--AAGATTGCATATCAT
1 ATCTCCAAGATTACAGATCAT
98497521 ATCT
1 ATCT
98497525 AAGATTGCAT
Statistics
Matches: 60, Mismatches: 3, Indels: 3
0.91 0.05 0.05
Matches are distributed among these distances:
19 38 0.63
21 10 0.17
22 12 0.20
ACGTcount: A:0.36, C:0.19, G:0.09, T:0.35
Consensus pattern (21 bp):
ATCTCCAAGATTACAGATCAT
Found at i:98497492 original size:19 final size:19
Alignment explanation
Indices: 98497457--98497537 Score: 144
Period size: 19 Copynumber: 4.2 Consensus size: 19
98497447 AGATTACAAG
98497457 ATCATATCTTCAAGATTGCAT
1 ATCATATC-T-AAGATTGCAT
98497478 ATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGCAT
98497497 ATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGCAT
98497516 ATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGCAT
98497535 ATC
1 ATC
98497538 CTTAAATATT
Statistics
Matches: 60, Mismatches: 0, Indels: 2
0.97 0.00 0.03
Matches are distributed among these distances:
19 51 0.85
20 1 0.02
21 8 0.13
ACGTcount: A:0.36, C:0.17, G:0.10, T:0.37
Consensus pattern (19 bp):
ATCATATCTAAGATTGCAT
Found at i:98498423 original size:30 final size:30
Alignment explanation
Indices: 98498384--98498442 Score: 84
Period size: 30 Copynumber: 2.0 Consensus size: 30
98498374 GAAGGTGAGA
*
98498384 TGGGAAGGGAATAAAAGTTTTAGGGGGAAAT
1 TGGGAAGGGAATAAAAATTTT-GGGGGAAAT
*
98498415 TGGG-AGGGAGTAAAAATTTTGGGGGAAA
1 TGGGAAGGGAATAAAAATTTTGGGGGAAA
98498443 ATAAAAAGTT
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
29 8 0.31
30 14 0.54
31 4 0.15
ACGTcount: A:0.37, C:0.00, G:0.41, T:0.22
Consensus pattern (30 bp):
TGGGAAGGGAATAAAAATTTTGGGGGAAAT
Found at i:98503798 original size:30 final size:31
Alignment explanation
Indices: 98503757--98503823 Score: 109
Period size: 30 Copynumber: 2.2 Consensus size: 31
98503747 GAGTCCCACT
98503757 TTGCCTCTATTATTTGCAAAATCAAACCAA-
1 TTGCCTCTATTATTTGCAAAATCAAACCAAG
* *
98503787 TTGCCTTTATTATTTGCAAAGTCAAACCAAG
1 TTGCCTCTATTATTTGCAAAATCAAACCAAG
98503818 TTGCCT
1 TTGCCT
98503824 ACTCTAAAGA
Statistics
Matches: 34, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
30 28 0.82
31 6 0.18
ACGTcount: A:0.31, C:0.22, G:0.10, T:0.36
Consensus pattern (31 bp):
TTGCCTCTATTATTTGCAAAATCAAACCAAG
Found at i:98506961 original size:23 final size:25
Alignment explanation
Indices: 98506935--98506981 Score: 62
Period size: 25 Copynumber: 2.0 Consensus size: 25
98506925 TATCATTCAT
*
98506935 TTCATTATAT-CA-ATATTTTATGC
1 TTCATCATATCCATATATTTTATGC
*
98506958 TTCATCATTTCCATATATTTTATG
1 TTCATCATATCCATATATTTTATG
98506982 TATATTTATT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
23 8 0.40
24 2 0.10
25 10 0.50
ACGTcount: A:0.28, C:0.15, G:0.04, T:0.53
Consensus pattern (25 bp):
TTCATCATATCCATATATTTTATGC
Found at i:98507302 original size:46 final size:46
Alignment explanation
Indices: 98507242--98507408 Score: 246
Period size: 46 Copynumber: 3.6 Consensus size: 46
98507232 TTTGACGTGA
* * * * * *
98507242 TGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTC-TGTCATGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACA-TTTCATATCAGGT
*
98507288 TGCCATGGTATCTTTCAACCATGGTCTTACACATCTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
*
98507334 TGCCATGGTATCTTTCAATCATGGTCTTACACATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
98507380 TGCCATGGTATCTTTCAACCATGGTCTTA
1 TGCCATGGTATCTTTCAACCATGGTCTTA
98507409 TGCACAGGTT
Statistics
Matches: 110, Mismatches: 10, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
45 3 0.03
46 107 0.97
ACGTcount: A:0.22, C:0.23, G:0.16, T:0.40
Consensus pattern (46 bp):
TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
Found at i:98507426 original size:38 final size:41
Alignment explanation
Indices: 98507286--98507492 Score: 197
Period size: 46 Copynumber: 4.8 Consensus size: 41
98507276 TTTCTGTCAT
98507286 GTTGCCATGGTATCTTTCAACCATGGTCTTACACATCT-CATATCAG
1 GTTGCCATGGTATCTTTCAACCATGGTCTT----AT-TGCA-ATCAG
* *
98507332 GTTGCCATGGTATCTTTCAATCATGGTCTTACACATTTCATATCAG
1 GTTGCCATGGTATCTTTCAACCATGGTCTT----ATTGCA-ATCAG
98507378 GTTGCCATGGTATCTTTCAACCATGGTCTTA-TGC-A-CAG
1 GTTGCCATGGTATCTTTCAACCATGGTCTTATTGCAATCAG
* * *
98507416 GTTGTCATGGTATCTTTCAACCATGGTTTTACACATTTCATATCAG
1 GTTGCCATGGTATCTTTCAACCATGGTCTT----ATTGCA-ATCAG
98507462 GTTGCCATGGTATCTTTCAACCATGGTCTTA
1 GTTGCCATGGTATCTTTCAACCATGGTCTTA
98507493 CACATTTCAT
Statistics
Matches: 144, Mismatches: 8, Indels: 22
0.83 0.05 0.13
Matches are distributed among these distances:
38 31 0.22
39 1 0.01
41 2 0.01
42 3 0.02
43 2 0.01
45 2 0.01
46 103 0.72
ACGTcount: A:0.23, C:0.23, G:0.17, T:0.38
Consensus pattern (41 bp):
GTTGCCATGGTATCTTTCAACCATGGTCTTATTGCAATCAG
Found at i:98507470 original size:84 final size:84
Alignment explanation
Indices: 98507329--98507492 Score: 301
Period size: 84 Copynumber: 2.0 Consensus size: 84
98507319 CATCTCATAT
*
98507329 CAGGTTGCCATGGTATCTTTCAATCATGGTCTTACACATTTCATATCAGGTTGCCATGGTATCTT
1 CAGGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCATGGTATCTT
98507394 TCAACCATGGTCTTATGCA
66 TCAACCATGGTCTTATGCA
* *
98507413 CAGGTTGTCATGGTATCTTTCAACCATGGTTTTACACATTTCATATCAGGTTGCCATGGTATCTT
1 CAGGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCATGGTATCTT
98507478 TCAACCATGGTCTTA
66 TCAACCATGGTCTTA
98507493 CACATTTCAT
Statistics
Matches: 77, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
84 77 1.00
ACGTcount: A:0.23, C:0.22, G:0.18, T:0.38
Consensus pattern (84 bp):
CAGGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCATGGTATCTT
TCAACCATGGTCTTATGCA
Found at i:98507480 original size:46 final size:46
Alignment explanation
Indices: 98507413--98507507 Score: 172
Period size: 46 Copynumber: 2.1 Consensus size: 46
98507403 GTCTTATGCA
* *
98507413 CAGGTTGTCATGGTATCTTTCAACCATGGTTTTACACATTTCATAT
1 CAGGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
98507459 CAGGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
1 CAGGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
98507505 CAG
1 CAG
98507508 AGAGCACACT
Statistics
Matches: 47, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
46 47 1.00
ACGTcount: A:0.24, C:0.22, G:0.16, T:0.38
Consensus pattern (46 bp):
CAGGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
Found at i:98515915 original size:28 final size:28
Alignment explanation
Indices: 98515846--98515922 Score: 79
Period size: 28 Copynumber: 2.8 Consensus size: 28
98515836 ATTATGGAAT
98515846 TGAAAAG-GAAATTGAATTGATGATGGA
1 TGAAAAGTGAAATTGAATTGATGATGGA
* * * *
98515873 T-AAGTATTGATATTGAATTGTAT-ATTGA
1 TGAA-AAGTGAAATTGAATTG-ATGATGGA
98515901 TGAAAAGTGAAATTGAATTGAT
1 TGAAAAGTGAAATTGAATTGAT
98515923 TCGTAAATGA
Statistics
Matches: 39, Mismatches: 7, Indels: 8
0.72 0.13 0.15
Matches are distributed among these distances:
26 2 0.05
27 4 0.10
28 29 0.74
29 4 0.10
ACGTcount: A:0.42, C:0.00, G:0.23, T:0.35
Consensus pattern (28 bp):
TGAAAAGTGAAATTGAATTGATGATGGA
Found at i:98520097 original size:18 final size:18
Alignment explanation
Indices: 98520062--98520107 Score: 53
Period size: 18 Copynumber: 2.7 Consensus size: 18
98520052 TATAATAACA
*
98520062 AAAATT-TATAAAAGAAT
1 AAAATTATATATAAGAAT
98520079 AATAATTATATATAA-AAT
1 AA-AATTATATATAAGAAT
98520097 AAAA-TATATAT
1 AAAATTATATAT
98520108 TGGTTTAGAA
Statistics
Matches: 26, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
16 7 0.27
17 4 0.15
18 9 0.35
19 6 0.23
ACGTcount: A:0.63, C:0.00, G:0.02, T:0.35
Consensus pattern (18 bp):
AAAATTATATATAAGAAT
Found at i:98520218 original size:21 final size:23
Alignment explanation
Indices: 98520160--98520218 Score: 72
Period size: 22 Copynumber: 2.7 Consensus size: 23
98520150 AATTTATATT
*
98520160 TATA-ATAAAATAA-TTATATAA
1 TATATATAAAATAAGTTATAGAA
98520181 TATATATAAATATAAGTT-TAGAA
1 TATATATAAA-ATAAGTTATAGAA
98520204 TA-ATATAAAATAAGT
1 TATATATAAAATAAGT
98520219 AATTAATGAT
Statistics
Matches: 34, Mismatches: 1, Indels: 6
0.83 0.02 0.15
Matches are distributed among these distances:
21 10 0.29
22 12 0.35
23 10 0.29
24 2 0.06
ACGTcount: A:0.58, C:0.00, G:0.05, T:0.37
Consensus pattern (23 bp):
TATATATAAAATAAGTTATAGAA
Found at i:98520385 original size:25 final size:26
Alignment explanation
Indices: 98520357--98520419 Score: 69
Period size: 25 Copynumber: 2.5 Consensus size: 26
98520347 ACCTTTAATG
*
98520357 ATAATAATATATAGATAA-AAAATAT
1 ATAATAATATATAAATAACAAAATAT
* *
98520382 ATAATAGTATA-AAATAACATAATAT
1 ATAATAATATATAAATAACAAAATAT
*
98520407 AAAATAAT-TATAA
1 ATAATAATATATAA
98520420 TATATAATAT
Statistics
Matches: 31, Mismatches: 5, Indels: 4
0.77 0.12 0.10
Matches are distributed among these distances:
24 7 0.23
25 24 0.77
ACGTcount: A:0.63, C:0.02, G:0.03, T:0.32
Consensus pattern (26 bp):
ATAATAATATATAAATAACAAAATAT
Found at i:98520424 original size:18 final size:18
Alignment explanation
Indices: 98520357--98520481 Score: 82
Period size: 19 Copynumber: 6.8 Consensus size: 18
98520347 ACCTTTAATG
* *
98520357 ATAATAATATATAGATAAA
1 ATAATTATA-ATATATAAA
98520376 A-AATATATAATAGTATAAA
1 ATAAT-TATAATA-TATAAA
*
98520395 ATAA-CAT-A-ATATAAA
1 ATAATTATAATATATAAA
*
98520410 ATAATTATAATATATAAT
1 ATAATTATAATATATAAA
* *
98520428 ATGAAAGTAT-ATATGTAAA
1 AT--AATTATAATATATAAA
98520447 ATAA-TATATATATATATAA
1 ATAATTATA-ATATATA-AA
98520466 ATAATTAATAATATAT
1 ATAATT-ATAATATAT
98520482 TATACAAATA
Statistics
Matches: 84, Mismatches: 9, Indels: 25
0.71 0.08 0.21
Matches are distributed among these distances:
15 10 0.12
16 6 0.07
17 4 0.05
18 22 0.26
19 25 0.30
20 14 0.17
21 3 0.04
ACGTcount: A:0.59, C:0.01, G:0.04, T:0.36
Consensus pattern (18 bp):
ATAATTATAATATATAAA
Found at i:98520460 original size:20 final size:20
Alignment explanation
Indices: 98520357--98520613 Score: 94
Period size: 20 Copynumber: 13.2 Consensus size: 20
98520347 ACCTTTAATG
*
98520357 ATAATA-ATATATAGATAAA
1 ATAATATATATATATATAAA
98520376 A-AATATATA-ATAGTAT--A
1 ATAATATATATATA-TATAAA
*
98520393 A-AATA-ACATA-ATATAAA
1 ATAATATATATATATATAAA
*
98520410 ATAAT-TATA-ATATATAAT
1 ATAATATATATATATATAAA
* *
98520428 ATGAA-A-GTATATATGTAAA
1 AT-AATATATATATATATAAA
98520447 ATAATATATATATATAT-AA
1 ATAATATATATATATATAAA
98520466 ATAAT-TAATAATATATTATACAA
1 ATAATAT-AT-ATATA-TATA-AA
*
98520489 ATAA-AAATATA-ATA-AAA
1 ATAATATATATATATATAAA
* *
98520506 AT-ATATAAATAATAATGTAAA
1 ATAATATATAT-AT-ATATAAA
*
98520527 ATAATA-ATAT-T-TCGTGAAA
1 ATAATATATATATAT-AT-AAA
98520546 AGTAATATATA-ATA-ATTAATA
1 A-TAATATATATATATA-TAA-A
*
98520567 ATAATATAAATAATATATAATAA
1 ATAATATATAT-ATATAT-A-AA
*
98520590 ATAAT-TATATAATATATAAT
1 ATAATATATAT-ATATATAAA
98520610 ATAA
1 ATAA
98520614 AAATAAGGTT
Statistics
Matches: 182, Mismatches: 18, Indels: 75
0.66 0.07 0.27
Matches are distributed among these distances:
15 3 0.02
16 4 0.02
17 19 0.10
18 29 0.16
19 34 0.19
20 36 0.20
21 22 0.12
22 20 0.11
23 14 0.08
24 1 0.01
ACGTcount: A:0.60, C:0.01, G:0.04, T:0.35
Consensus pattern (20 bp):
ATAATATATATATATATAAA
Found at i:98520485 original size:23 final size:23
Alignment explanation
Indices: 98520448--98520492 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 23
98520438 ATATGTAAAA
*
98520448 TAATATATATATATATAAATAAT
1 TAATATATATATATACAAATAAT
98520471 TAATA-ATATATTATACAAATAA
1 TAATATATATA-TATACAAATAA
98520493 AAATATAATA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
22 5 0.25
23 15 0.75
ACGTcount: A:0.58, C:0.02, G:0.00, T:0.40
Consensus pattern (23 bp):
TAATATATATATATACAAATAAT
Found at i:98520512 original size:27 final size:26
Alignment explanation
Indices: 98520446--98520521 Score: 68
Period size: 27 Copynumber: 3.0 Consensus size: 26
98520436 ATATATGTAA
* * *
98520446 AATAATATATATATATATAAATAATT
1 AATAAAATATATACAAATAAATAATT
*
98520472 AATAATATATTATACAAATAAA-AATAT
1 AATAAAATA-TATACAAATAAATAAT-T
*
98520499 AATAAAA-ATATATAAAT-AATAAT
1 AATAAAATATATACAAATAAATAAT
98520522 GTAAAATAAT
Statistics
Matches: 43, Mismatches: 4, Indels: 7
0.80 0.07 0.13
Matches are distributed among these distances:
24 2 0.05
25 11 0.26
26 13 0.30
27 17 0.40
ACGTcount: A:0.63, C:0.01, G:0.00, T:0.36
Consensus pattern (26 bp):
AATAAAATATATACAAATAAATAATT
Found at i:98520526 original size:22 final size:22
Alignment explanation
Indices: 98520500--98520618 Score: 56
Period size: 22 Copynumber: 5.4 Consensus size: 22
98520490 TAAAAATATA
98520500 ATAAAAATATATAAATAATAAT
1 ATAAAAATATATAAATAATAAT
* *
98520522 GT-AAAATA-AT-AAT-AT-TT
1 ATAAAAATATATAAATAATAAT
* * *
98520539 CGTGAAAAGTA-ATATATAATAAT
1 -AT-AAAAATATATAAATAATAAT
*
98520562 -TAATAATAATATAAATAAT-AT
1 ATAAAAAT-ATATAAATAATAAT
98520583 ATAATAAATAATTATATAATATATAAT
1 ATAA-AAAT-A-TATA-AATA-ATAAT
98520610 ATAAAAATA
1 ATAAAAATA
98520619 AGGTTAAAAA
Statistics
Matches: 74, Mismatches: 9, Indels: 25
0.69 0.08 0.23
Matches are distributed among these distances:
17 1 0.01
18 4 0.05
19 3 0.04
20 13 0.18
21 12 0.16
22 14 0.19
23 6 0.08
24 4 0.05
25 5 0.07
26 6 0.08
27 6 0.08
ACGTcount: A:0.61, C:0.01, G:0.03, T:0.35
Consensus pattern (22 bp):
ATAAAAATATATAAATAATAAT
Found at i:98520529 original size:27 final size:27
Alignment explanation
Indices: 98520440--98520536 Score: 67
Period size: 27 Copynumber: 3.6 Consensus size: 27
98520430 GAAAGTATAT
* *
98520440 ATGTAAAATAATATATATATATATAAATA
1 ATGTAAAATAA-AAATATATAAAT-AATA
* * *
98520469 AT-TAATAAT-ATATTATACAAATAA-A
1 ATGTAA-AATAAAAATATATAAATAATA
* *
98520494 A-ATATAATAAAAATATATAAATAATA
1 ATGTAAAATAAAAATATATAAATAATA
*
98520520 ATGTAAAATAATAATAT
1 ATGTAAAATAAAAATAT
98520537 TTCGTGAAAA
Statistics
Matches: 51, Mismatches: 12, Indels: 12
0.68 0.16 0.16
Matches are distributed among these distances:
24 3 0.06
25 16 0.31
26 4 0.08
27 19 0.37
28 4 0.08
29 5 0.10
ACGTcount: A:0.62, C:0.01, G:0.02, T:0.35
Consensus pattern (27 bp):
ATGTAAAATAAAAATATATAAATAATA
Found at i:98520580 original size:12 final size:12
Alignment explanation
Indices: 98520554--98520677 Score: 82
Period size: 12 Copynumber: 10.3 Consensus size: 12
98520544 AAAGTAATAT
98520554 ATAATAAT-T-A
1 ATAATAATATAA
98520564 ATAATAATATAA
1 ATAATAATATAA
98520576 ATAATATATAATAA
1 ATAATA-AT-ATAA
*
98520590 ATAATTATAT-A
1 ATAATAATATAA
98520601 ATATATAATATAA
1 ATA-ATAATATAA
98520614 A-AATAAGGT-TAA
1 ATAATAA--TATAA
* *
98520626 A-AATAAAACAA
1 ATAATAATATAA
98520637 ATAATAATAATAA
1 ATAATAAT-ATAA
* *
98520650 A-AATTTATATAT
1 ATAA-TAATATAA
*
98520662 ATAATAATAGAA
1 ATAATAATATAA
98520674 ATAA
1 ATAA
98520678 ATATATAGGG
Statistics
Matches: 90, Mismatches: 11, Indels: 24
0.72 0.09 0.19
Matches are distributed among these distances:
10 8 0.09
11 12 0.13
12 45 0.50
13 16 0.18
14 9 0.10
ACGTcount: A:0.64, C:0.01, G:0.02, T:0.33
Consensus pattern (12 bp):
ATAATAATATAA
Found at i:98520668 original size:22 final size:22
Alignment explanation
Indices: 98520640--98520684 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 22
98520630 AAAACAAATA
**
98520640 ATAATAATAAAAATTTATATAT
1 ATAATAATAAAAATAAATATAT
*
98520662 ATAATAATAGAAATAAATATAT
1 ATAATAATAAAAATAAATATAT
98520684 A
1 A
98520685 GGGTTAGATT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.62, C:0.00, G:0.02, T:0.36
Consensus pattern (22 bp):
ATAATAATAAAAATAAATATAT
Found at i:98522638 original size:206 final size:206
Alignment explanation
Indices: 98522210--98522763 Score: 815
Period size: 206 Copynumber: 2.7 Consensus size: 206
98522200 AAATCTGCTT
* * *
98522210 CTTCGATTTGTTTTCTGACAACACAGAGATGCCAAGTCATCTTAGATTTGCTTCATCGTAAGCAC
1 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCATCGTAAGCAC
* * *
98522275 GTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGT-AA-GCATGGATACCAAACCATCTT
66 GTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAACACAAGGATGCCAAACCATCTT
* * * ** * *
98522338 GGATTTGCTTCAGTCTAATCATCTGAAGGTTAGATCTGCTATGTGTTTGCCCCCCGTCGAATATG
131 GGATCTGCTTCAGTATAAGCATCTGAAGGCCAGATCTGCTATGTATCTGCCCCCCGTCGAATATG
98522403 GAGACGCAAAA
196 GAGACGCAAAA
* * *
98522414 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGACTTGCTTCAGCGTAAGCAT
1 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCATCGTAAGCAC
* * * **
98522479 GCGAAAACCAAATCAGCTATGTCTTTGATTTGTTCCTTGTAAACACAAGGATGCCAAATTATCTT
66 GTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAACACAAGGATGCCAAACCATCTT
* * *
98522544 GGATCTGCTTCAGTATAAGGATCTGAAGGCCAGATCTGCTATGTATCTGCTCTCCGTCGAATATG
131 GGATCTGCTTCAGTATAAGCATCTGAAGGCCAGATCTGCTATGTATCTGCCCCCCGTCGAATATG
*
98522609 GAGACGCCAAA
196 GAGACGCAAAA
* *
98522620 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATTTTAGATTTTCTTCATCGTAAGCAC
1 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCATCGTAAGCAC
* * *
98522685 GTGAAAGCCAAATCAGCTTTGTCTTCAATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTT
66 GTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAACACAAGGATGCCAAACCATCTT
98522750 GGATCTTGCTTCAG
131 GGATC-TGCTTCAG
98522764 CCAGATCTAC
Statistics
Matches: 309, Mismatches: 38, Indels: 3
0.88 0.11 0.01
Matches are distributed among these distances:
204 96 0.31
205 2 0.01
206 203 0.66
207 8 0.03
ACGTcount: A:0.27, C:0.22, G:0.19, T:0.32
Consensus pattern (206 bp):
CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCATCGTAAGCAC
GTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAACACAAGGATGCCAAACCATCTT
GGATCTGCTTCAGTATAAGCATCTGAAGGCCAGATCTGCTATGTATCTGCCCCCCGTCGAATATG
GAGACGCAAAA
Found at i:98530830 original size:15 final size:15
Alignment explanation
Indices: 98530800--98530830 Score: 55
Period size: 14 Copynumber: 2.1 Consensus size: 15
98530790 ATTCTGATTC
98530800 AATTTCATTTAGAAA
1 AATTTCATTTAGAAA
98530815 AATTT-ATTTAGAAA
1 AATTTCATTTAGAAA
98530829 AA
1 AA
98530831 GAATATCTTT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 11 0.69
15 5 0.31
ACGTcount: A:0.52, C:0.03, G:0.06, T:0.39
Consensus pattern (15 bp):
AATTTCATTTAGAAA
Found at i:98534597 original size:18 final size:19
Alignment explanation
Indices: 98534549--98534607 Score: 59
Period size: 18 Copynumber: 3.2 Consensus size: 19
98534539 ACAATATATA
* *
98534549 ATATATAATAACAAAAATT
1 ATATATAAGAATAAAAATT
* *
98534568 -TATAAAAGAATAATAATT
1 ATATATAAGAATAAAAATT
*
98534586 ATATATAA-AATAAAAAAT
1 ATATATAAGAATAAAAATT
98534604 ATAT
1 ATAT
98534608 TGGTTTAGAA
Statistics
Matches: 32, Mismatches: 7, Indels: 3
0.76 0.17 0.07
Matches are distributed among these distances:
18 26 0.81
19 6 0.19
ACGTcount: A:0.64, C:0.02, G:0.02, T:0.32
Consensus pattern (19 bp):
ATATATAAGAATAAAAATT
Found at i:98534896 original size:18 final size:17
Alignment explanation
Indices: 98534856--98534926 Score: 60
Period size: 16 Copynumber: 4.2 Consensus size: 17
98534846 ACCTTTAATG
* *
98534856 ATAATAATATAT-AGAT
1 ATAAAAATATATAATAT
98534872 A-AAAAATATATAATAGT
1 ATAAAAATATATAATA-T
*
98534889 ATAAAAATAACATAATAT
1 ATAAAAAT-ATATAATAT
98534907 A-AAATAAT-TATAATAT
1 ATAAA-AATATATAATAT
98534923 ATAA
1 ATAA
98534927 TATGAAAGTA
Statistics
Matches: 45, Mismatches: 4, Indels: 11
0.75 0.07 0.18
Matches are distributed among these distances:
15 9 0.20
16 11 0.24
17 7 0.16
18 11 0.24
19 7 0.16
ACGTcount: A:0.63, C:0.01, G:0.03, T:0.32
Consensus pattern (17 bp):
ATAAAAATATATAATAT
Found at i:98535070 original size:3 final size:3
Alignment explanation
Indices: 98535051--98535122 Score: 60
Period size: 3 Copynumber: 24.0 Consensus size: 3
98535041 TCGTGAAAAG
* *
98535051 TAA TATA TAA AAA TAA TAA TAA TAA TATA TAA TAA -AA TAA TTA TAA
1 TAA TA-A TAA TAA TAA TAA TAA TAA TA-A TAA TAA TAA TAA TAA TAA
* *
98535097 TTA T-A TAA TATA TAA T-A TAA AAA TAA
1 TAA TAA TAA TA-A TAA TAA TAA TAA TAA
98535123 GGTTAAAAAT
Statistics
Matches: 56, Mismatches: 7, Indels: 12
0.75 0.09 0.16
Matches are distributed among these distances:
2 6 0.11
3 41 0.73
4 9 0.16
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (3 bp):
TAA
Found at i:98540238 original size:31 final size:31
Alignment explanation
Indices: 98540203--98540266 Score: 110
Period size: 31 Copynumber: 2.1 Consensus size: 31
98540193 CCTATTCATA
98540203 TTTCATATTTCATAATACTGGGCCGAAGCCT
1 TTTCATATTTCATAATACTGGGCCGAAGCCT
* *
98540234 TTTCATATTTCATATTACTGGGCCGCAGCCT
1 TTTCATATTTCATAATACTGGGCCGAAGCCT
98540265 TT
1 TT
98540267 ACTGTAAACA
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.22, C:0.23, G:0.16, T:0.39
Consensus pattern (31 bp):
TTTCATATTTCATAATACTGGGCCGAAGCCT
Found at i:98540525 original size:26 final size:26
Alignment explanation
Indices: 98540492--98540564 Score: 137
Period size: 26 Copynumber: 2.8 Consensus size: 26
98540482 TCTTTTTAAT
98540492 AACTGGGGCATAAGCCCTTTTCGGTA
1 AACTGGGGCATAAGCCCTTTTCGGTA
*
98540518 AAGTGGGGCATAAGCCCTTTTCGGTA
1 AACTGGGGCATAAGCCCTTTTCGGTA
98540544 AACTGGGGCATAAGCCCTTTT
1 AACTGGGGCATAAGCCCTTTT
98540565 GCACTTTATC
Statistics
Matches: 45, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 45 1.00
ACGTcount: A:0.23, C:0.22, G:0.27, T:0.27
Consensus pattern (26 bp):
AACTGGGGCATAAGCCCTTTTCGGTA
Found at i:98540639 original size:20 final size:20
Alignment explanation
Indices: 98540612--98540666 Score: 83
Period size: 20 Copynumber: 2.8 Consensus size: 20
98540602 TTGAATACAT
98540612 CATGTGCATATCATACATAA
1 CATGTGCATATCATACATAA
* *
98540632 CGTGTGCATATCATACATAT
1 CATGTGCATATCATACATAA
*
98540652 CATGTGCATGTCATA
1 CATGTGCATATCATA
98540667 TCAGTCATGT
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 31 1.00
ACGTcount: A:0.33, C:0.20, G:0.15, T:0.33
Consensus pattern (20 bp):
CATGTGCATATCATACATAA
Found at i:98548210 original size:31 final size:31
Alignment explanation
Indices: 98548167--98548249 Score: 143
Period size: 31 Copynumber: 2.7 Consensus size: 31
98548157 CCAATCTCAA
98548167 CATA-TACT-GGCCGAAGCCTTTTCATATTT
1 CATATTACTGGGCCGAAGCCTTTTCATATTT
*
98548196 CATATTATTGGGCCGAAGCCTTTTCATATTT
1 CATATTACTGGGCCGAAGCCTTTTCATATTT
98548227 CATATTACTGGGCCGAAGCCTTT
1 CATATTACTGGGCCGAAGCCTTT
98548250 ACTGTAAACG
Statistics
Matches: 50, Mismatches: 2, Indels: 2
0.93 0.04 0.04
Matches are distributed among these distances:
29 4 0.08
30 3 0.06
31 43 0.86
ACGTcount: A:0.23, C:0.23, G:0.17, T:0.37
Consensus pattern (31 bp):
CATATTACTGGGCCGAAGCCTTTTCATATTT
Found at i:98548635 original size:20 final size:20
Alignment explanation
Indices: 98548572--98548638 Score: 100
Period size: 20 Copynumber: 3.4 Consensus size: 20
98548562 TTATGAATAC
98548572 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
98548592 AACATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
98548612 ATCATGTGCATGTCATATCA-
1 ATCATGTGCATATCATA-CAT
98548632 ATCATGT
1 ATCATGT
98548639 ATATCAAAAT
Statistics
Matches: 43, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
20 41 0.95
21 2 0.05
ACGTcount: A:0.34, C:0.19, G:0.12, T:0.34
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:98551542 original size:13 final size:14
Alignment explanation
Indices: 98551517--98551545 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
98551507 GACGAGGCTC
98551517 CTTTGCTTCCTTTG
1 CTTTGCTTCCTTTG
98551531 CTTTGC-TCCTTTG
1 CTTTGCTTCCTTTG
98551544 CT
1 CT
98551546 GATGGCTCTC
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 9 0.60
14 6 0.40
ACGTcount: A:0.00, C:0.31, G:0.14, T:0.55
Consensus pattern (14 bp):
CTTTGCTTCCTTTG
Found at i:98553483 original size:27 final size:27
Alignment explanation
Indices: 98553389--98553475 Score: 104
Period size: 27 Copynumber: 3.2 Consensus size: 27
98553379 TTAGTTTATC
** *
98553389 AAATTACTGAAATACCCTCGACTTGTA
1 AAATTACCCAAATACCCTCGATTTGTA
* *
98553416 AAATTA-CCAAAGTACCCCCGATTTATA
1 AAATTACCCAAA-TACCCTCGATTTGTA
*
98553443 AAATTACCCAAATATCCTCGATTTGTA
1 AAATTACCCAAATACCCTCGATTTGTA
98553470 AAATTA
1 AAATTA
98553476 TTGAAATAAG
Statistics
Matches: 50, Mismatches: 8, Indels: 4
0.81 0.13 0.06
Matches are distributed among these distances:
26 3 0.06
27 42 0.84
28 5 0.10
ACGTcount: A:0.40, C:0.22, G:0.08, T:0.30
Consensus pattern (27 bp):
AAATTACCCAAATACCCTCGATTTGTA
Found at i:98553528 original size:27 final size:27
Alignment explanation
Indices: 98553488--98553684 Score: 232
Period size: 27 Copynumber: 7.3 Consensus size: 27
98553478 GAAATAAGAT
* *
98553488 AGAATTACCATTTTACTCTCGATTTAC
1 AGAATTACCGTTTTACCCTCGATTTAC
* *
98553515 AGAATTACCGTTTTACCCTCAATTTAT
1 AGAATTACCGTTTTACCCTCGATTTAC
* * *
98553542 AGAATTACTGTTTTACCCCCGATTTAA
1 AGAATTACCGTTTTACCCTCGATTTAC
* * * *
98553569 AAAATTATCGTTTTACCCTCAATTTAT
1 AGAATTACCGTTTTACCCTCGATTTAC
*
98553596 AGAATTACCGTCTTACCCTCGATTTAC
1 AGAATTACCGTTTTACCCTCGATTTAC
* * *
98553623 AGAATTACCATTTTACCCTTGATTTAT
1 AGAATTACCGTTTTACCCTCGATTTAC
* *
98553650 AAAATTACCATTTTACCCTCGATTTAC
1 AGAATTACCGTTTTACCCTCGATTTAC
*
98553677 AAAATTAC
1 AGAATTAC
98553685 TAAAATACCT
Statistics
Matches: 144, Mismatches: 26, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 144 1.00
ACGTcount: A:0.31, C:0.22, G:0.07, T:0.39
Consensus pattern (27 bp):
AGAATTACCGTTTTACCCTCGATTTAC
Found at i:98553575 original size:54 final size:54
Alignment explanation
Indices: 98553486--98553684 Score: 272
Period size: 54 Copynumber: 3.7 Consensus size: 54
98553476 TTGAAATAAG
* *
98553486 ATAGAATTACCATTTTACTCTCGATTTACAGAATTACCGTTTTACCCTCAATTT
1 ATAGAATTACCATTTTACCCTCGATTTACAAAATTACCGTTTTACCCTCAATTT
** * * *
98553540 ATAGAATTACTGTTTTACCCCCGATTTAAAAAATTATCGTTTTACCCTCAATTT
1 ATAGAATTACCATTTTACCCTCGATTTACAAAATTACCGTTTTACCCTCAATTT
* * * * **
98553594 ATAGAATTACCGTCTTACCCTCGATTTACAGAATTACCATTTTACCCTTGATTT
1 ATAGAATTACCATTTTACCCTCGATTTACAAAATTACCGTTTTACCCTCAATTT
*
98553648 ATAAAATTACCATTTTACCCTCGATTTACAAAATTAC
1 ATAGAATTACCATTTTACCCTCGATTTACAAAATTAC
98553685 TAAAATACCT
Statistics
Matches: 125, Mismatches: 20, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
54 125 1.00
ACGTcount: A:0.32, C:0.22, G:0.07, T:0.39
Consensus pattern (54 bp):
ATAGAATTACCATTTTACCCTCGATTTACAAAATTACCGTTTTACCCTCAATTT
Found at i:98553602 original size:81 final size:81
Alignment explanation
Indices: 98553490--98553684 Score: 264
Period size: 81 Copynumber: 2.4 Consensus size: 81
98553480 AATAAGATAG
* * * **
98553490 AATTACCATTTTACTCTCGATTTACAGAATTACCGTTTTACCCTCAATTTATAGAATTACTGTTT
1 AATTACCATTTTACCCTCGATTTACAGAATTACCGTCTTACCCTCAATTTACAGAATTACCATTT
98553555 TACCCCCGATTTAAAA
66 TACCCCCGATTTAAAA
* * * * *
98553571 AATTATCGTTTTACCCTCAATTTATAGAATTACCGTCTTACCCTCGATTTACAGAATTACCATTT
1 AATTACCATTTTACCCTCGATTTACAGAATTACCGTCTTACCCTCAATTTACAGAATTACCATTT
** *
98553636 TACCCTTGATTTATAA
66 TACCCCCGATTTAAAA
*
98553652 AATTACCATTTTACCCTCGATTTACAAAATTAC
1 AATTACCATTTTACCCTCGATTTACAGAATTAC
98553685 TAAAATACCT
Statistics
Matches: 96, Mismatches: 18, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
81 96 1.00
ACGTcount: A:0.31, C:0.23, G:0.07, T:0.39
Consensus pattern (81 bp):
AATTACCATTTTACCCTCGATTTACAGAATTACCGTCTTACCCTCAATTTACAGAATTACCATTT
TACCCCCGATTTAAAA
Found at i:98553693 original size:27 final size:27
Alignment explanation
Indices: 98553582--98553803 Score: 151
Period size: 27 Copynumber: 8.2 Consensus size: 27
98553572 ATTATCGTTT
* * ****
98553582 TACCCTCAATTTATAGAATTACCGTCT
1 TACCCTCGATTTATAAAATTACCAAAA
* * ***
98553609 TACCCTCGATTTACAGAATTACCATTT
1 TACCCTCGATTTATAAAATTACCAAAA
* ***
98553636 TACCCTTGATTTATAAAATTACCATTT
1 TACCCTCGATTTATAAAATTACCAAAA
* *
98553663 TACCCTCGATTTACAAAATTACTAAAA
1 TACCCTCGATTTATAAAATTACCAAAA
* * * *
98553690 TACCTTTGGTTTACAAAATTACCAAAA
1 TACCCTCGATTTATAAAATTACCAAAA
* ** *
98553717 TACCATCGATCAATAAAATTACCATAA
1 TACCCTCGATTTATAAAATTACCAAAA
* *
98553744 TACCC-CTGGTTTGTAAAATTACCAAAA
1 TACCCTC-GATTTATAAAATTACCAAAA
* *
98553771 TACCC-CTGATTTGTAAAATTACCGAAA
1 TACCCTC-GATTTATAAAATTACCAAAA
98553798 TACCCT
1 TACCCT
98553804 TGTAGGGTAG
Statistics
Matches: 161, Mismatches: 32, Indels: 3
0.82 0.16 0.02
Matches are distributed among these distances:
26 1 0.01
27 160 0.99
ACGTcount: A:0.37, C:0.23, G:0.07, T:0.33
Consensus pattern (27 bp):
TACCCTCGATTTATAAAATTACCAAAA
Found at i:98553748 original size:81 final size:81
Alignment explanation
Indices: 98553648--98553801 Score: 184
Period size: 81 Copynumber: 1.9 Consensus size: 81
98553638 CCCTTGATTT
** * ** *
98553648 ATAAAATTACCATTTTA-CCCTCGATTTACAAAATTACTAAAATACCTTTGGTTTACAAAATTAC
1 ATAAAATTACCATAATACCCCT-GATTTACAAAATTACCAAAATACCCCTGATTTACAAAATTAC
98553712 CAAAATACCATCGATCA
65 CAAAATACCATCGATCA
* ** **
98553729 ATAAAATTACCATAATACCCCTGGTTTGTAAAATTACCAAAATACCCCTGATTTGTAAAATTACC
1 ATAAAATTACCATAATACCCCTGATTTACAAAATTACCAAAATACCCCTGATTTACAAAATTACC
*
98553794 GAAATACC
66 AAAATACC
98553802 CTTGTAGGGT
Statistics
Matches: 60, Mismatches: 12, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
81 56 0.93
82 4 0.07
ACGTcount: A:0.42, C:0.21, G:0.06, T:0.31
Consensus pattern (81 bp):
ATAAAATTACCATAATACCCCTGATTTACAAAATTACCAAAATACCCCTGATTTACAAAATTACC
AAAATACCATCGATCA
Found at i:98553817 original size:27 final size:27
Alignment explanation
Indices: 98553760--98554142 Score: 414
Period size: 27 Copynumber: 14.3 Consensus size: 27
98553750 TGGTTTGTAA
* ** *
98553760 AATTACCAAAATACCCCTG-ATTTGTAA
1 AATTACCGAAATACCCCTGTA-GGGTAG
*
98553787 AATTACCGAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * *
98553814 AATTACTGAAATACCCCTATAGGGTAA
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
98553841 AATTATCGGAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
98553868 AATTACCGAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
98553895 AATTACCGAAATACCTCTGTAGGGTAA
1 AATTACCGAAATACCCCTGTAGGGTAG
** *
98553922 AATTATTGGAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
98553949 AATTACTGGAATACCCCTGTAGGGTA-
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
98553975 ATATTACTG-AATACCCTTGTAGGGTAG
1 A-ATTACCGAAATACCCCTGTAGGGTAG
* **
98554002 AAATATTGAAATACCCCTGTA-GGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
98554028 AATTACTGAAATACCCCTGTAGGATAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
98554055 AATTATCGAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
98554082 AAATACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * * * * *
98554109 AATTACTGATATACCCTTATGGGGTAA
1 AATTACCGAAATACCCCTGTAGGGTAG
98554136 AATTACC
1 AATTACC
98554143 TTTTCTGCCC
Statistics
Matches: 303, Mismatches: 48, Indels: 10
0.84 0.13 0.03
Matches are distributed among these distances:
26 46 0.15
27 256 0.84
28 1 0.00
ACGTcount: A:0.35, C:0.18, G:0.20, T:0.27
Consensus pattern (27 bp):
AATTACCGAAATACCCCTGTAGGGTAG
Found at i:98554648 original size:32 final size:31
Alignment explanation
Indices: 98554590--98554674 Score: 82
Period size: 32 Copynumber: 2.7 Consensus size: 31
98554580 GATCATATTT
* * *
98554590 ACTGAAGGCTGTGTGCC-AGTTATATTACCGTC
1 ACTGATGGCTATGTGCCAAG-T-TATTACAGTC
*
98554622 ACTGATGGCTATGTGCCGAAGTTATTACAGTT
1 ACTGATGGCTATGTGCC-AAGTTATTACAGTC
* *
98554654 ATTGATGGCTTTGTGCCAAGT
1 ACTGATGGCTATGTGCCAAGT
98554675 ATTCTGTTAA
Statistics
Matches: 45, Mismatches: 6, Indels: 5
0.80 0.11 0.09
Matches are distributed among these distances:
31 4 0.09
32 38 0.84
33 1 0.02
34 2 0.04
ACGTcount: A:0.22, C:0.18, G:0.26, T:0.34
Consensus pattern (31 bp):
ACTGATGGCTATGTGCCAAGTTATTACAGTC
Found at i:98554744 original size:54 final size:53
Alignment explanation
Indices: 98554685--98554786 Score: 125
Period size: 54 Copynumber: 1.9 Consensus size: 53
98554675 ATTCTGTTAA
* * * *
98554685 GTGGCTTTGCCATATTATCT-TATTCTGGTGGCTATGCCACAAATATCTGTTTTG
1 GTGGCTCTGCCACAATATCTATA-TCTGGTGACTATGCCAC-AATATCTGTTTTG
* *
98554739 GTGGCTCTGCCACAATATCTATATCTGGTGACTCTGTCACAATATCTG
1 GTGGCTCTGCCACAATATCTATATCTGGTGACTATGCCACAATATCTG
98554787 ATAACTGAGC
Statistics
Matches: 41, Mismatches: 6, Indels: 3
0.82 0.12 0.06
Matches are distributed among these distances:
53 8 0.20
54 31 0.76
55 2 0.05
ACGTcount: A:0.21, C:0.22, G:0.20, T:0.38
Consensus pattern (53 bp):
GTGGCTCTGCCACAATATCTATATCTGGTGACTATGCCACAATATCTGTTTTG
Found at i:98554767 original size:27 final size:26
Alignment explanation
Indices: 98554685--98554785 Score: 96
Period size: 27 Copynumber: 3.8 Consensus size: 26
98554675 ATTCTGTTAA
* * *
98554685 GTGGCTTTGCCATATTATCTTATTCTG
1 GTGGCTCTGCCACAATATCTTA-TCTG
* *
98554712 GTGGCTATGCCACAAATATCTGT-TTTG
1 GTGGCTCTGCCAC-AATATCT-TATCTG
98554739 GTGGCTCTGCCACAATATCTATATCTG
1 GTGGCTCTGCCACAATATCT-TATCTG
* *
98554766 GTGACTCTGTCACAATATCT
1 GTGGCTCTGCCACAATATCT
98554786 GATAACTGAG
Statistics
Matches: 62, Mismatches: 9, Indels: 6
0.81 0.12 0.08
Matches are distributed among these distances:
26 8 0.13
27 47 0.76
28 6 0.10
29 1 0.02
ACGTcount: A:0.21, C:0.22, G:0.19, T:0.39
Consensus pattern (26 bp):
GTGGCTCTGCCACAATATCTTATCTG
Found at i:98554961 original size:6 final size:6
Alignment explanation
Indices: 98554946--98555037 Score: 55
Period size: 6 Copynumber: 14.8 Consensus size: 6
98554936 ATTCTGTTAC
* * * *
98554946 CTGATA CTGATT CTGATT TTGATT TTG-TT ACCTGATA CTGATTT CTGATT
1 CTGATT CTGATT CTGATT CTGATT CTGATT --CTGATT CTGA-TT CTGATT
* *
98554996 CTG-TCAC CTAATT CTGATT CTGATT CTGATT CT-AGTT CTGAT
1 CTGAT--T CTGATT CTGATT CTGATT CTGATT CTGA-TT CTGAT
98555038 AATGTTTCTT
Statistics
Matches: 68, Mismatches: 9, Indels: 18
0.72 0.09 0.19
Matches are distributed among these distances:
5 4 0.06
6 52 0.76
7 10 0.15
8 2 0.03
ACGTcount: A:0.20, C:0.17, G:0.15, T:0.48
Consensus pattern (6 bp):
CTGATT
Found at i:98554965 original size:32 final size:32
Alignment explanation
Indices: 98554923--98554995 Score: 103
Period size: 31 Copynumber: 2.3 Consensus size: 32
98554913 TTGCATTCAC
* *
98554923 ATTCTAATTTTTTATTCTGTTACCTGATACTG
1 ATTCTGATTTTTGATTCTGTTACCTGATACTG
*
98554955 ATTCTGA-TTTTGATTTTGTTACCTGATACTG
1 ATTCTGATTTTTGATTCTGTTACCTGATACTG
98554986 ATTTCTGATT
1 A-TTCTGATT
98554996 CTGTCACCTA
Statistics
Matches: 36, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
31 23 0.64
32 12 0.33
33 1 0.03
ACGTcount: A:0.21, C:0.14, G:0.12, T:0.53
Consensus pattern (32 bp):
ATTCTGATTTTTGATTCTGTTACCTGATACTG
Found at i:98554978 original size:31 final size:32
Alignment explanation
Indices: 98554931--98554995 Score: 105
Period size: 31 Copynumber: 2.1 Consensus size: 32
98554921 ACATTCTAAT
*
98554931 TTTTTATTCTGTTACCTGATACTGA-TTCTGA
1 TTTTGATTCTGTTACCTGATACTGATTTCTGA
*
98554962 TTTTGATTTTGTTACCTGATACTGATTTCTGA
1 TTTTGATTCTGTTACCTGATACTGATTTCTGA
98554994 TT
1 TT
98554996 CTGTCACCTA
Statistics
Matches: 31, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
31 23 0.74
32 8 0.26
ACGTcount: A:0.18, C:0.14, G:0.14, T:0.54
Consensus pattern (32 bp):
TTTTGATTCTGTTACCTGATACTGATTTCTGA
Found at i:98554986 original size:25 final size:25
Alignment explanation
Indices: 98554952--98555023 Score: 90
Period size: 25 Copynumber: 2.8 Consensus size: 25
98554942 TTACCTGATA
* *
98554952 CTGATTCTGATTTTGATTTTGTTAC
1 CTGATTCTGATTTTGATTCTGTCAC
*
98554977 CTGATACTGATTTCTGATTCTGTCAC
1 CTGATTCTGATTT-TGATTCTGTCAC
* *
98555003 CTAATTCTGATTCTGATTCTG
1 CTGATTCTGATTTTGATTCTG
98555024 ATTCTAGTTC
Statistics
Matches: 40, Mismatches: 6, Indels: 2
0.83 0.12 0.04
Matches are distributed among these distances:
25 20 0.50
26 20 0.50
ACGTcount: A:0.18, C:0.18, G:0.15, T:0.49
Consensus pattern (25 bp):
CTGATTCTGATTTTGATTCTGTCAC
Found at i:98557307 original size:24 final size:23
Alignment explanation
Indices: 98557278--98557323 Score: 65
Period size: 24 Copynumber: 2.0 Consensus size: 23
98557268 TTAGCGAACA
98557278 AAATATATAAATATATAAATAAAC
1 AAATATATAAATATA-AAATAAAC
* *
98557302 AAATATTTATATATAAAATAAA
1 AAATATATAAATATAAAATAAA
98557324 ATATAAATTG
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
23 7 0.35
24 13 0.65
ACGTcount: A:0.65, C:0.02, G:0.00, T:0.33
Consensus pattern (23 bp):
AAATATATAAATATAAAATAAAC
Found at i:98557812 original size:20 final size:20
Alignment explanation
Indices: 98557769--98557817 Score: 62
Period size: 20 Copynumber: 2.5 Consensus size: 20
98557759 GGGGGCTAGT
*
98557769 AAATCAATTTGATTAAAATA
1 AAATCAAATTGATTAAAATA
* *
98557789 AAATCAAATTGATTAGAATC
1 AAATCAAATTGATTAAAATA
*
98557809 AAATAAAAT
1 AAATCAAAT
98557818 CAGGATATAT
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.57, C:0.06, G:0.06, T:0.31
Consensus pattern (20 bp):
AAATCAAATTGATTAAAATA
Found at i:98561492 original size:86 final size:86
Alignment explanation
Indices: 98561334--98561497 Score: 202
Period size: 86 Copynumber: 1.9 Consensus size: 86
98561324 ATTAAAATCC
* * * * * *
98561334 AATAAAATTTATTAAACAGCAGGAATAAGTCCTAACATAAATTTTATTTAATTTTCATTCTTGTT
1 AATAAAATTCATTAAACAGCAGGAATAAATCCTAAAATAAATTTTATTTAAATTTAATTCTTATT
*
98561399 CGGAAATAAAATAAAAAATGA
66 CGCAAATAAAATAAAAAATGA
* * * * *
98561420 AATAAAATTCATTGAACGGCGGGAATAAATCCTAAAATAGATTTTATTTAAATTTAATTTTTATT
1 AATAAAATTCATTAAACAGCAGGAATAAATCCTAAAATAAATTTTATTTAAATTTAATTCTTATT
**
98561485 TTCAAATAAAATA
66 CGCAAATAAAATA
98561498 TAATATTTTT
Statistics
Matches: 64, Mismatches: 14, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
86 64 1.00
ACGTcount: A:0.46, C:0.09, G:0.09, T:0.37
Consensus pattern (86 bp):
AATAAAATTCATTAAACAGCAGGAATAAATCCTAAAATAAATTTTATTTAAATTTAATTCTTATT
CGCAAATAAAATAAAAAATGA
Found at i:98561633 original size:16 final size:17
Alignment explanation
Indices: 98561612--98561659 Score: 55
Period size: 16 Copynumber: 2.8 Consensus size: 17
98561602 AACAAAATAT
98561612 ATAAATATATAAATAAA
1 ATAAATATATAAATAAA
*
98561629 A-AAATATTTATATATAAA
1 ATAAATA--TATAAATAAA
98561647 ATAAA-ATATAAAT
1 ATAAATATATAAAT
98561660 TGAATAATTT
Statistics
Matches: 26, Mismatches: 2, Indels: 7
0.74 0.06 0.20
Matches are distributed among these distances:
16 11 0.42
17 1 0.04
18 11 0.42
19 3 0.12
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (17 bp):
ATAAATATATAAATAAA
Found at i:98561635 original size:22 final size:20
Alignment explanation
Indices: 98561605--98561659 Score: 56
Period size: 22 Copynumber: 2.6 Consensus size: 20
98561595 GTTAGTGAAC
*
98561605 AAAATATATAAATATATAAATA
1 AAAAAATATAAATATAT-AA-A
**
98561627 AAAAAATATTTATATATAAA
1 AAAAAATATAAATATATAAA
*
98561647 ATAAAATATAAAT
1 AAAAAATATAAAT
98561660 TGAATAATTT
Statistics
Matches: 27, Mismatches: 6, Indels: 2
0.77 0.17 0.06
Matches are distributed among these distances:
20 11 0.41
21 2 0.07
22 14 0.52
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (20 bp):
AAAAAATATAAATATATAAA
Found at i:98561642 original size:20 final size:20
Alignment explanation
Indices: 98561616--98561655 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
98561606 AAATATATAA
98561616 ATATATAAATAAAAAAATATTT
1 ATATAT-AA-AAAAAAATATTT
*
98561638 ATATATAAAATAAAATAT
1 ATATATAAAAAAAAATAT
98561656 AAATTGAATA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 9 0.53
21 2 0.12
22 6 0.35
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (20 bp):
ATATATAAAAAAAAATATTT
Found at i:98562142 original size:20 final size:20
Alignment explanation
Indices: 98562099--98562148 Score: 64
Period size: 20 Copynumber: 2.5 Consensus size: 20
98562089 AGGGGCTATT
*
98562099 AAATCAATTTGATTAAAATA
1 AAATCAAATTGATTAAAATA
* *
98562119 AAATCAAATTGATTAGAATC
1 AAATCAAATTGATTAAAATA
*
98562139 AAATAAAATT
1 AAATCAAATT
98562149 AGGATATATG
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
20 26 1.00
ACGTcount: A:0.56, C:0.06, G:0.06, T:0.32
Consensus pattern (20 bp):
AAATCAAATTGATTAAAATA
Found at i:98565582 original size:20 final size:19
Alignment explanation
Indices: 98565557--98565599 Score: 52
Period size: 20 Copynumber: 2.2 Consensus size: 19
98565547 GAGCTTTTCT
98565557 TTTTTA-ATATATTATAAATA
1 TTTTTATAT-TATTA-AAATA
*
98565577 TTTTTATATTATTAAATTA
1 TTTTTATATTATTAAAATA
98565596 TTTT
1 TTTT
98565600 ATTATCATTT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
19 8 0.38
20 11 0.52
21 2 0.10
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (19 bp):
TTTTTATATTATTAAAATA
Found at i:98565585 original size:19 final size:20
Alignment explanation
Indices: 98565557--98565599 Score: 54
Period size: 19 Copynumber: 2.2 Consensus size: 20
98565547 GAGCTTTTCT
98565557 TTTTTAATA-TATTATAAATA
1 TTTTTAATATTATTA-AAATA
*
98565577 TTTTT-ATATTATTAAATTA
1 TTTTTAATATTATTAAAATA
98565596 TTTT
1 TTTT
98565600 ATTATCATTT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
19 11 0.52
20 10 0.48
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (20 bp):
TTTTTAATATTATTAAAATA
Found at i:98565586 original size:17 final size:19
Alignment explanation
Indices: 98565564--98565599 Score: 58
Period size: 17 Copynumber: 2.0 Consensus size: 19
98565554 TCTTTTTTAA
98565564 TATATTA-TAAA-TATTTT
1 TATATTATTAAATTATTTT
98565581 TATATTATTAAATTATTTT
1 TATATTATTAAATTATTTT
98565600 ATTATCATTT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 7 0.41
18 4 0.24
19 6 0.35
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (19 bp):
TATATTATTAAATTATTTT
Found at i:98571612 original size:35 final size:35
Alignment explanation
Indices: 98571547--98571640 Score: 82
Period size: 35 Copynumber: 2.7 Consensus size: 35
98571537 CATAGGTAAG
* * ** *
98571547 TACATGTAAGCTTATATTGAACTGGT-ATATTCGGC
1 TACATGTGAGCTTACATTGAA-TTTTAATATTCGAC
* * * *
98571582 TGCATGTGAGGTTACATTGAATTTTAATATTTGAT
1 TACATGTGAGCTTACATTGAATTTTAATATTCGAC
*
98571617 TACATGTGAGCTTATATTGAATTT
1 TACATGTGAGCTTACATTGAATTT
98571641 ATATACTCGG
Statistics
Matches: 46, Mismatches: 12, Indels: 2
0.77 0.20 0.03
Matches are distributed among these distances:
34 2 0.04
35 44 0.96
ACGTcount: A:0.29, C:0.10, G:0.19, T:0.43
Consensus pattern (35 bp):
TACATGTGAGCTTACATTGAATTTTAATATTCGAC
Found at i:98571659 original size:35 final size:35
Alignment explanation
Indices: 98571584--98571660 Score: 84
Period size: 35 Copynumber: 2.2 Consensus size: 35
98571574 TATTCGGCTG
* * *
98571584 CATGTGAGGTTACATTGAATTTTAATATTTGATTA
1 CATGTGAGCTTACATTGAATTTTAATACTCGATTA
* *
98571619 CATGTGAGCTTATATTGAA-TTTATATACTCGGTTA
1 CATGTGAGCTTACATTGAATTTTA-ATACTCGATTA
*
98571654 TATGTGA
1 CATGTGA
98571661 AATTATCTTG
Statistics
Matches: 35, Mismatches: 6, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
34 4 0.11
35 31 0.89
ACGTcount: A:0.30, C:0.08, G:0.18, T:0.44
Consensus pattern (35 bp):
CATGTGAGCTTACATTGAATTTTAATACTCGATTA
Found at i:98578296 original size:115 final size:115
Alignment explanation
Indices: 98578094--98578324 Score: 444
Period size: 115 Copynumber: 2.0 Consensus size: 115
98578084 CATCTAGAGT
98578094 AAGAATCCTGCATAAAAGATATGAAGTAAGTGGTATCTGCAAGTATACGAGTTAGGTTGTAACAT
1 AAGAATCCTGCATAAAAGATATGAAGTAAGTGGTATCTGCAAGTATACGAGTTAGGTTGTAACAT
98578159 AGTTACAATGAAGTAAGTGAGTACTCTAAGGATCATACCCAAGGGAGGTG
66 AGTTACAATGAAGTAAGTGAGTACTCTAAGGATCATACCCAAGGGAGGTG
*
98578209 AAGAATCCTGCATAAAAGATATGAAGTAAGTGGTATCTGTAAGTATACGAGTTAGGTTGTAACAT
1 AAGAATCCTGCATAAAAGATATGAAGTAAGTGGTATCTGCAAGTATACGAGTTAGGTTGTAACAT
*
98578274 AGTTACAATGAAGTAGGTGAGTACTCTAAGGATCATACCCAAGGGAGGTG
66 AGTTACAATGAAGTAAGTGAGTACTCTAAGGATCATACCCAAGGGAGGTG
98578324 A
1 A
98578325 GTACTAAATT
Statistics
Matches: 114, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
115 114 1.00
ACGTcount: A:0.37, C:0.12, G:0.26, T:0.26
Consensus pattern (115 bp):
AAGAATCCTGCATAAAAGATATGAAGTAAGTGGTATCTGCAAGTATACGAGTTAGGTTGTAACAT
AGTTACAATGAAGTAAGTGAGTACTCTAAGGATCATACCCAAGGGAGGTG
Found at i:98583831 original size:42 final size:42
Alignment explanation
Indices: 98583772--98583855 Score: 150
Period size: 42 Copynumber: 2.0 Consensus size: 42
98583762 CTTCAAAAAG
*
98583772 AACAATTAAAATGTGGATGTATTTCCAAATAGCATATATGTT
1 AACAATTAAAATGTGGATGTATTTCCAAATACCATATATGTT
*
98583814 AACAATTAAAATGTGGATGTATTTCCAAATCCCATATATGTT
1 AACAATTAAAATGTGGATGTATTTCCAAATACCATATATGTT
98583856 CCCCAAAACT
Statistics
Matches: 40, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
42 40 1.00
ACGTcount: A:0.39, C:0.12, G:0.13, T:0.36
Consensus pattern (42 bp):
AACAATTAAAATGTGGATGTATTTCCAAATACCATATATGTT
Found at i:98603682 original size:30 final size:30
Alignment explanation
Indices: 98603642--98603708 Score: 125
Period size: 30 Copynumber: 2.2 Consensus size: 30
98603632 ACATAAGCCC
*
98603642 AAATACCTCAAACCCGTTACAACAAACCCA
1 AAATAGCTCAAACCCGTTACAACAAACCCA
98603672 AAATAGCTCAAACCCGTTACAACAAACCCA
1 AAATAGCTCAAACCCGTTACAACAAACCCA
98603702 AAATAGC
1 AAATAGC
98603709 CCAGACCCAT
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 36 1.00
ACGTcount: A:0.48, C:0.33, G:0.06, T:0.13
Consensus pattern (30 bp):
AAATAGCTCAAACCCGTTACAACAAACCCA
Found at i:98605070 original size:7 final size:7
Alignment explanation
Indices: 98605050--98605202 Score: 64
Period size: 7 Copynumber: 22.9 Consensus size: 7
98605040 TCAAAATTTG
98605050 TATATTA
1 TATATTA
98605057 T-TATTA
1 TATATTA
98605063 TATATTA
1 TATATTA
98605070 TAT-TT-
1 TATATTA
98605075 TA-ACTTA
1 TATA-TTA
98605082 TATATCTTA
1 TATA--TTA
98605091 TATATTTA
1 TATA-TTA
*
98605099 TTTATT-
1 TATATTA
98605105 TATATTA
1 TATATTA
*
98605112 TACATTA
1 TATATTA
98605119 T-T-TTA
1 TATATTA
* *
98605124 AAAACTTA
1 TATA-TTA
* *
98605132 CAT-TTT
1 TATATTA
98605138 TATATTA
1 TATATTA
98605145 TATATTA
1 TATATTA
*
98605152 TAAATTA
1 TATATTA
*
98605159 TTTCATT-
1 TAT-ATTA
98605166 TATTATTA
1 TA-TATTA
98605174 T-T-TT-
1 TATATTA
98605178 TATA-TA
1 TATATTA
98605184 T-TATTA
1 TATATTA
98605190 TATATTA
1 TATATTA
*
98605197 TCTATT
1 TATATT
98605203 TTAAAATTCA
Statistics
Matches: 110, Mismatches: 17, Indels: 38
0.67 0.10 0.23
Matches are distributed among these distances:
4 1 0.01
5 11 0.10
6 24 0.22
7 50 0.45
8 16 0.15
9 8 0.07
ACGTcount: A:0.36, C:0.05, G:0.00, T:0.59
Consensus pattern (7 bp):
TATATTA
Found at i:98605113 original size:21 final size:20
Alignment explanation
Indices: 98605000--98605203 Score: 74
Period size: 21 Copynumber: 10.4 Consensus size: 20
98604990 CTTATTTTTA
*
98605000 ATTTA-TTATA-TAGATATT
1 ATTTATTTATATTATATATT
*
98605018 ATTTA-TTATATTATTTA-T
1 ATTTATTTATATTATATATT
** * *
98605036 ATTT-TCAAAATTTGTATATT
1 ATTTATTTATA-TTATATATT
*
98605056 A-TTATTATATATTATATTTT
1 ATTTATT-TATATTATATATT
* * *
98605076 AACTTATATATCTTATATATTT
1 -ATTTATTTATATTATATA-TT
*
98605098 ATTTATTTATATTATACATT
1 ATTTATTTATATTATATATT
** * *
98605118 ATTT-TAAAAACTTACAT-TT
1 ATTTATTTATA-TTATATATT
*
98605137 -TTATATTATATATTATAAATT
1 ATT-TATT-TATATTATATATT
98605158 ATTTCA-TT-TATTAT-TATT
1 ATTT-ATTTATATTATATATT
*
98605176 -TTTATATATTATTATATATT
1 ATTTATTTA-TATTATATATT
*
98605196 ATCTATTT
1 ATTTATTT
98605204 TAAAATTCAC
Statistics
Matches: 132, Mismatches: 33, Indels: 39
0.65 0.16 0.19
Matches are distributed among these distances:
16 1 0.01
17 4 0.03
18 22 0.17
19 29 0.22
20 30 0.23
21 37 0.28
22 9 0.07
ACGTcount: A:0.36, C:0.04, G:0.01, T:0.59
Consensus pattern (20 bp):
ATTTATTTATATTATATATT
Found at i:98605185 original size:16 final size:17
Alignment explanation
Indices: 98605137--98605195 Score: 57
Period size: 19 Copynumber: 3.3 Consensus size: 17
98605127 ACTTACATTT
*
98605137 TTATATTATATATTATAAA
1 TTAT-TTATATATTAT-TA
*
98605156 TTATTTCATTTATTATTA
1 TTATTT-ATATATTATTA
98605174 TT-TTTATATATTATTA
1 TTATTTATATATTATTA
98605190 TATATT
1 T-TATT
98605196 ATCTATTTTA
Statistics
Matches: 34, Mismatches: 3, Indels: 7
0.77 0.07 0.16
Matches are distributed among these distances:
16 11 0.32
17 4 0.12
18 7 0.21
19 12 0.35
ACGTcount: A:0.36, C:0.02, G:0.00, T:0.63
Consensus pattern (17 bp):
TTATTTATATATTATTA
Found at i:98610874 original size:26 final size:26
Alignment explanation
Indices: 98610843--98610950 Score: 180
Period size: 26 Copynumber: 4.2 Consensus size: 26
98610833 TGAAATTCCC
98610843 ATCATGGAACATTTACCTAAACCATT
1 ATCATGGAACATTTACCTAAACCATT
*
98610869 ATCATGGAACATTTACCTAAGCCATT
1 ATCATGGAACATTTACCTAAACCATT
* *
98610895 ATCATGGAATATTTACCTAATCCATT
1 ATCATGGAACATTTACCTAAACCATT
*
98610921 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAAACCATT
98610947 ATCA
1 ATCA
98610951 ATTTGTATCA
Statistics
Matches: 77, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 77 1.00
ACGTcount: A:0.36, C:0.23, G:0.08, T:0.32
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAAACCATT
Found at i:98618400 original size:8 final size:8
Alignment explanation
Indices: 98618387--98618464 Score: 79
Period size: 8 Copynumber: 9.4 Consensus size: 8
98618377 AAGTAAATGA
*
98618387 TATTATGT
1 TATTATAT
98618395 TATTATAT
1 TATTATAT
*
98618403 TATTACAT
1 TATTATAT
98618411 TATTATAT
1 TATTATAT
98618419 TA-TAT-T
1 TATTATAT
98618425 ATATTATATT
1 -TATTATA-T
98618435 ATATTATATT
1 -TATTATA-T
98618445 ATATTATAT
1 -TATTATAT
98618454 TATTATAT
1 TATTATAT
98618462 TAT
1 TAT
98618465 ATAACATAAA
Statistics
Matches: 63, Mismatches: 3, Indels: 8
0.85 0.04 0.11
Matches are distributed among these distances:
6 1 0.02
7 5 0.08
8 37 0.59
9 1 0.02
10 19 0.30
ACGTcount: A:0.37, C:0.01, G:0.01, T:0.60
Consensus pattern (8 bp):
TATTATAT
Found at i:98618403 original size:5 final size:5
Alignment explanation
Indices: 98618395--98618466 Score: 93
Period size: 5 Copynumber: 15.6 Consensus size: 5
98618385 GATATTATGT
*
98618395 TATTA TA-T- TATTA CATTA T--TA TATTA TATTA TATTA TATTA TATTA
1 TATTA TATTA TATTA TATTA TATTA TATTA TATTA TATTA TATTA TATTA
98618441 TATTA TATTA TA-T- TATTA TATTA TAT
1 TATTA TATTA TATTA TATTA TATTA TAT
98618467 AACATAAAAT
Statistics
Matches: 59, Mismatches: 2, Indels: 12
0.81 0.03 0.16
Matches are distributed among these distances:
3 7 0.12
4 4 0.07
5 48 0.81
ACGTcount: A:0.39, C:0.01, G:0.00, T:0.60
Consensus pattern (5 bp):
TATTA
Found at i:98621502 original size:14 final size:14
Alignment explanation
Indices: 98621452--98621509 Score: 55
Period size: 14 Copynumber: 3.9 Consensus size: 14
98621442 TTTTTATTTA
98621452 ATATGTATA-ATATAT
1 ATATGTATATA-AT-T
*
98621467 ATATGTTATAATAATA
1 ATATG-TAT-ATAATT
*
98621483 AAATGTATATAATT
1 ATATGTATATAATT
98621497 ATATGTATATAAT
1 ATATGTATATAAT
98621510 ATAAGTTATG
Statistics
Matches: 36, Mismatches: 4, Indels: 7
0.77 0.09 0.15
Matches are distributed among these distances:
14 17 0.47
15 8 0.22
16 7 0.19
17 3 0.08
18 1 0.03
ACGTcount: A:0.48, C:0.00, G:0.07, T:0.45
Consensus pattern (14 bp):
ATATGTATATAATT
Found at i:98622156 original size:43 final size:43
Alignment explanation
Indices: 98622095--98622178 Score: 111
Period size: 43 Copynumber: 2.0 Consensus size: 43
98622085 TGTGATTCCG
*
98622095 ATATGTGTTTACGAGTAAGACC-CTGTCTGGGACAG-TGGCATCA
1 ATATGTGGTTACGAGTAAGACCAC-GTCTGGGAC-GTTGGCATCA
98622138 ATATGTGGTTAC-ATGTAAGACCACGTCTGGGACGTTGGCAT
1 ATATGTGGTTACGA-GTAAGACCACGTCTGGGACGTTGGCAT
98622179 TGTACGATTT
Statistics
Matches: 37, Mismatches: 1, Indels: 6
0.84 0.02 0.14
Matches are distributed among these distances:
42 2 0.05
43 34 0.92
44 1 0.03
ACGTcount: A:0.25, C:0.18, G:0.29, T:0.29
Consensus pattern (43 bp):
ATATGTGGTTACGAGTAAGACCACGTCTGGGACGTTGGCATCA
Found at i:98626439 original size:29 final size:30
Alignment explanation
Indices: 98626382--98626453 Score: 105
Period size: 29 Copynumber: 2.5 Consensus size: 30
98626372 TAAATCTTAA
*
98626382 AATTATATATA-AATTTTAATTTAATATAT
1 AATTATATATATAACTTTAATTTAATATAT
98626411 AATTATATATATCAACTTTAATTT-A-ATAT
1 AATTATATATAT-AACTTTAATTTAATATAT
98626440 AATTATATATATAA
1 AATTATATATATAA
98626454 AACACTAATT
Statistics
Matches: 40, Mismatches: 1, Indels: 5
0.87 0.02 0.11
Matches are distributed among these distances:
28 2 0.05
29 27 0.68
30 1 0.03
31 10 0.25
ACGTcount: A:0.49, C:0.03, G:0.00, T:0.49
Consensus pattern (30 bp):
AATTATATATATAACTTTAATTTAATATAT
Found at i:98626467 original size:31 final size:30
Alignment explanation
Indices: 98626398--98626479 Score: 85
Period size: 31 Copynumber: 2.7 Consensus size: 30
98626388 ATATAAATTT
* * **
98626398 TAATTTAATATATAATTATATATATCAACTT
1 TAATTTTA-ATATAATTATATATATAAACAC
98626429 TAA-TTTAATATAATTATATATATAAAACAC
1 TAATTTTAATATAATTATATATAT-AAACAC
* *
98626459 TAATTTTAATTTAAATATATA
1 TAATTTTAATATAATTATATA
98626480 CTTAATTTTA
Statistics
Matches: 43, Mismatches: 6, Indels: 4
0.81 0.11 0.08
Matches are distributed among these distances:
29 16 0.37
30 9 0.21
31 18 0.42
ACGTcount: A:0.49, C:0.05, G:0.00, T:0.46
Consensus pattern (30 bp):
TAATTTTAATATAATTATATATATAAACAC
Found at i:98626659 original size:30 final size:29
Alignment explanation
Indices: 98626619--98626698 Score: 108
Period size: 29 Copynumber: 2.7 Consensus size: 29
98626609 GTTAATAATT
98626619 TATA-AAAATTAAATTAAATTAAAATTTTA
1 TATATAAAATTAAATTAAATTAAAA-TTTA
* *
98626648 TATATAAAATTACATAAAATTAAAATTTA
1 TATATAAAATTAAATTAAATTAAAATTTA
*
98626677 TATATAAAGTTAAATTATAATT
1 TATATAAAATTAAATTA-AATT
98626699 CGTATATAAT
Statistics
Matches: 44, Mismatches: 5, Indels: 3
0.85 0.10 0.06
Matches are distributed among these distances:
29 22 0.50
30 22 0.50
ACGTcount: A:0.56, C:0.01, G:0.01, T:0.41
Consensus pattern (29 bp):
TATATAAAATTAAATTAAATTAAAATTTA
Found at i:98626681 original size:31 final size:29
Alignment explanation
Indices: 98626619--98626684 Score: 96
Period size: 30 Copynumber: 2.2 Consensus size: 29
98626609 GTTAATAATT
*
98626619 TATAAAAATTAAATTAAATTAAAATTTTA
1 TATAAAAATTAAATAAAATTAAAATTTTA
*
98626648 TATATAAAATTACATAAAATTAAAATTTATA
1 TATA-AAAATTAAATAAAATTAAAATTT-TA
98626679 TATAAA
1 TATAAA
98626685 GTTAAATTAT
Statistics
Matches: 33, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
29 4 0.12
30 23 0.70
31 6 0.18
ACGTcount: A:0.59, C:0.02, G:0.00, T:0.39
Consensus pattern (29 bp):
TATAAAAATTAAATAAAATTAAAATTTTA
Found at i:98626691 original size:24 final size:23
Alignment explanation
Indices: 98626628--98626707 Score: 61
Period size: 24 Copynumber: 3.1 Consensus size: 23
98626618 TTATAAAAAT
98626628 TAAATTAAATTAAAATTTTATATA
1 TAAATTAAATTAAAA-TTTATATA
98626652 TAAAATTACATAAAATTAAAATTTATATA
1 T-AAA-T---T-AAATTAAAATTTATATA
* **
98626681 TAAAGTTAAATTATAATTCGTATA
1 TAAA-TTAAATTAAAATTTATATA
98626705 TAA
1 TAA
98626708 TTTTGATATT
Statistics
Matches: 46, Mismatches: 4, Indels: 12
0.74 0.06 0.19
Matches are distributed among these distances:
24 18 0.39
25 4 0.09
26 1 0.02
28 4 0.09
29 10 0.22
30 9 0.20
ACGTcount: A:0.54, C:0.03, G:0.03, T:0.41
Consensus pattern (23 bp):
TAAATTAAATTAAAATTTATATA
Found at i:98627184 original size:2 final size:2
Alignment explanation
Indices: 98627177--98627204 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
98627167 AATTAGTCAG
98627177 TC TC TC TC TC TC TC TC TC TC TC TC TC TC
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC
98627205 ATGATCTTAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (2 bp):
TC
Found at i:98631188 original size:53 final size:53
Alignment explanation
Indices: 98631130--98631237 Score: 216
Period size: 53 Copynumber: 2.0 Consensus size: 53
98631120 TTAAAATCCA
98631130 AAACCTTAAAGCACCAAAATCTAGTTTGCACATTAACTTAACGAGTACAAACT
1 AAACCTTAAAGCACCAAAATCTAGTTTGCACATTAACTTAACGAGTACAAACT
98631183 AAACCTTAAAGCACCAAAATCTAGTTTGCACATTAACTTAACGAGTACAAACT
1 AAACCTTAAAGCACCAAAATCTAGTTTGCACATTAACTTAACGAGTACAAACT
98631236 AA
1 AA
98631238 CTTCATTAGA
Statistics
Matches: 55, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
53 55 1.00
ACGTcount: A:0.44, C:0.22, G:0.09, T:0.24
Consensus pattern (53 bp):
AAACCTTAAAGCACCAAAATCTAGTTTGCACATTAACTTAACGAGTACAAACT
Found at i:98637219 original size:20 final size:20
Alignment explanation
Indices: 98637196--98637234 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
98637186 AACTATTTAA
**
98637196 ATAATATTATTTGAATAATT
1 ATAATATTAAATGAATAATT
98637216 ATAATATTAAATGAATAAT
1 ATAATATTAAATGAATAAT
98637235 CATGTGTTTA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.51, C:0.00, G:0.05, T:0.44
Consensus pattern (20 bp):
ATAATATTAAATGAATAATT
Found at i:98641636 original size:43 final size:43
Alignment explanation
Indices: 98641589--98641701 Score: 122
Period size: 42 Copynumber: 2.7 Consensus size: 43
98641579 ACTCGATTGA
* * **
98641589 GATTTACGTATAAGACCATGTCTGGGACATTGGCATC-ATATCT
1 GATTTACATGTAAGACCATGTCTGGGACAGAGGCATCGATAT-T
* *
98641632 GATTT-CATGTAAGACCCTTTCTGGGACAGAGGCATCGATATT
1 GATTTACATGTAAGACCATGTCTGGGACAGAGGCATCGATATT
* * *
98641674 GAATTACATGTAAGACCACGTCCGGGAC
1 GATTTACATGTAAGACCATGTCTGGGAC
98641702 GTCAGCATTG
Statistics
Matches: 57, Mismatches: 11, Indels: 4
0.79 0.15 0.06
Matches are distributed among these distances:
42 30 0.53
43 27 0.47
ACGTcount: A:0.28, C:0.20, G:0.23, T:0.28
Consensus pattern (43 bp):
GATTTACATGTAAGACCATGTCTGGGACAGAGGCATCGATATT
Found at i:98648978 original size:42 final size:43
Alignment explanation
Indices: 98648930--98649022 Score: 109
Period size: 42 Copynumber: 2.2 Consensus size: 43
98648920 GATTTACGTA
** *
98648930 TAAGACCATGTATGGGACATTGGCATCG-TATCT-AATTTCATG
1 TAAGACCATGTATGGGACAGAGGCATCGATAT-TGAATTACATG
* * *
98648972 TAAGACCCTTTCTGGGACAGAGGCATCGATATTGAATTACATG
1 TAAGACCATGTATGGGACAGAGGCATCGATATTGAATTACATG
98649015 TAAGACCA
1 TAAGACCA
98649023 CGTCCGGGAC
Statistics
Matches: 42, Mismatches: 7, Indels: 3
0.81 0.13 0.06
Matches are distributed among these distances:
42 24 0.57
43 18 0.43
ACGTcount: A:0.31, C:0.18, G:0.22, T:0.29
Consensus pattern (43 bp):
TAAGACCATGTATGGGACAGAGGCATCGATATTGAATTACATG
Found at i:98649032 original size:43 final size:42
Alignment explanation
Indices: 98648951--98649032 Score: 96
Period size: 43 Copynumber: 1.9 Consensus size: 42
98648941 ATGGGACATT
* * *
98648951 GGCATCGTATCTAATTTCATGTAAGACCCTTTCTGGGACAGA
1 GGCATCGTATCTAATTACATGTAAGACCCTGTCCGGGACAGA
98648993 GGCATCGATAT-TGAATTACATGTAAGACCAC-GTCCGGGAC
1 GGCATCG-TATCT-AATTACATGTAAGACC-CTGTCCGGGAC
98649033 GTCGGCATTG
Statistics
Matches: 34, Mismatches: 3, Indels: 5
0.81 0.07 0.12
Matches are distributed among these distances:
42 8 0.24
43 25 0.74
44 1 0.03
ACGTcount: A:0.28, C:0.22, G:0.23, T:0.27
Consensus pattern (42 bp):
GGCATCGTATCTAATTACATGTAAGACCCTGTCCGGGACAGA
Found at i:98653347 original size:22 final size:23
Alignment explanation
Indices: 98653319--98653361 Score: 61
Period size: 23 Copynumber: 1.9 Consensus size: 23
98653309 ACACAAGCAT
*
98653319 AAATGAC-CACATTCCATAACCC
1 AAATGACAAACATTCCATAACCC
*
98653341 AAATGACAAACATTCTATAAC
1 AAATGACAAACATTCCATAAC
98653362 ATTTCATATA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 7 0.39
23 11 0.61
ACGTcount: A:0.47, C:0.28, G:0.05, T:0.21
Consensus pattern (23 bp):
AAATGACAAACATTCCATAACCC
Found at i:98654852 original size:50 final size:46
Alignment explanation
Indices: 98654781--98654901 Score: 134
Period size: 46 Copynumber: 2.5 Consensus size: 46
98654771 TGTCTTCGAC
** * *
98654781 ATGGACTTACATGAATTATTCCTGTCTCCAATGCCATATATATATCTAAT
1 ATGGACTTACATGGCTCATTCCTGTCTCCAAAGCC----ATATATCTAAT
* * *
98654831 ATGGGCTTACATGGCTCATTCCTGTGTCCAAAGCCATATATCTGAT
1 ATGGACTTACATGGCTCATTCCTGTCTCCAAAGCCATATATCTAAT
*
98654877 ATGGACTTACATGGCTCATTTCTGT
1 ATGGACTTACATGGCTCATTCCTGT
98654902 TCTATCCCGT
Statistics
Matches: 62, Mismatches: 9, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
46 33 0.53
50 29 0.47
ACGTcount: A:0.26, C:0.21, G:0.16, T:0.36
Consensus pattern (46 bp):
ATGGACTTACATGGCTCATTCCTGTCTCCAAAGCCATATATCTAAT
Found at i:98656809 original size:45 final size:45
Alignment explanation
Indices: 98656719--98656833 Score: 117
Period size: 45 Copynumber: 2.5 Consensus size: 45
98656709 CTTGAGCTGA
* *
98656719 TGAACAGTAAGCTC-TATTGAGCTGAAATAGTAAACTCTATCGAGC
1 TGAACAGTAAGCTCATA-TGAGCTGAAACAGTAAACTCAATCGAGC
* **
98656764 TGAACAGTAAGCTCATATGAGCTGAAACGGTAAGTTCCAAT-GAGC
1 TGAACAGTAAGCTCATATGAGCTGAAACAGTAAACT-CAATCGAGC
* *
98656809 TGAAAACAGTAAGATCATATAAGCT
1 TG--AACAGTAAGCTCATATGAGCT
98656834 AAAATATCGG
Statistics
Matches: 59, Mismatches: 7, Indels: 6
0.82 0.10 0.08
Matches are distributed among these distances:
45 35 0.59
46 5 0.08
47 19 0.32
ACGTcount: A:0.38, C:0.17, G:0.21, T:0.24
Consensus pattern (45 bp):
TGAACAGTAAGCTCATATGAGCTGAAACAGTAAACTCAATCGAGC
Found at i:98656820 original size:24 final size:23
Alignment explanation
Indices: 98656711--98656860 Score: 110
Period size: 23 Copynumber: 6.3 Consensus size: 23
98656701 AAGCTCCTCT
98656711 TGAGCTGATGAACAGTAAGCTC-TA
1 TGAGCTGA--AACAGTAAGCTCATA
* *
98656735 TTGAGCTGAAATAGTAAACTC-TA
1 -TGAGCTGAAACAGTAAGCTCATA
98656758 TCGAGCTG-AACAGTAAGCTCATA
1 T-GAGCTGAAACAGTAAGCTCATA
* *
98656781 TGAGCTGAAACGGTAAGTTCCA-A
1 TGAGCTGAAACAGTAAGCT-CATA
*
98656804 TGAGCTGAAAACAGTAAGATCATA
1 TGAGCTG-AAACAGTAAGCTCATA
* * *
98656828 TAAGCTAAAATATCGGTAAGCTCATA
1 TGAGCT-GAA-A-CAGTAAGCTCATA
*
98656854 CGAGCTG
1 TGAGCTG
98656861 TAGTGAGTCT
Statistics
Matches: 101, Mismatches: 15, Indels: 18
0.75 0.11 0.13
Matches are distributed among these distances:
22 17 0.17
23 40 0.40
24 20 0.20
25 9 0.09
26 15 0.15
ACGTcount: A:0.37, C:0.17, G:0.22, T:0.24
Consensus pattern (23 bp):
TGAGCTGAAACAGTAAGCTCATA
Found at i:98660482 original size:40 final size:34
Alignment explanation
Indices: 98660406--98660472 Score: 125
Period size: 34 Copynumber: 2.0 Consensus size: 34
98660396 CCATGCAATT
*
98660406 TCGATTAACTTTAACATGTTTTCACTGAGTGAAA
1 TCGATTAACTTTAACATGTTTTCACTAAGTGAAA
98660440 TCGATTAACTTTAACATGTTTTCACTAAGTGAA
1 TCGATTAACTTTAACATGTTTTCACTAAGTGAA
98660473 GGTTCAATCG
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 32 1.00
ACGTcount: A:0.33, C:0.15, G:0.13, T:0.39
Consensus pattern (34 bp):
TCGATTAACTTTAACATGTTTTCACTAAGTGAAA
Done.