Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A06
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 115140250
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2234201 characters in sequence are not A, C, G, or T
File 29 of 345
Found at i:8386814 original size:14 final size:14
Alignment explanation
Indices: 8386795--8386828 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
8386785 TGATTTTTTT
* *
8386795 TTGAAAGACAGAAA
1 TTGAAAAACAAAAA
8386809 TTGAAAAACAAAAA
1 TTGAAAAACAAAAA
8386823 TTGAAA
1 TTGAAA
8386829 TTGCCTCAGC
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.62, C:0.06, G:0.15, T:0.18
Consensus pattern (14 bp):
TTGAAAAACAAAAA
Found at i:8386826 original size:179 final size:176
Alignment explanation
Indices: 8386451--8386968 Score: 586
Period size: 179 Copynumber: 2.9 Consensus size: 176
8386441 GAATTGATTT
* * * * * * * *
8386451 TTGAAAAATAGAATTTGAAAATACCTCAGTGTGCCCCGAGGCCCAACTCACCTATCGCAATATGA
1 TTGAAAAAAAAAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACTTCTCGCAATATGA
*
8386516 GTTGATTTTTGAAA-CATAGAAATTGAAATTAACAGAAATTGAAAATACCTC-GGTGTGCCCTGA
66 GTTGATTTTTAAAAGCAT---AATTGAAA--AACAGAAATTGAAAATACCTCAGGTGTG-CCTGA
* * *
8386579 GGCTCAACTCACCTCTCGCAATATGAGTT-A--ATTTTTTGAAAAATATAAA
125 GGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTTGAAAAACAGAAA
8386628 TTGAAAAAAAAAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACTTCTCGCAATAT
1 TTG-AAAAAAAA-AAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACTTCTCGCAATAT
*
8386693 GAGTTGATTTTTTAAAAGCATAACTTGAAAAACGGAAATTGAAAATACCTCAGGTGTGACCTGAG
64 GAGTTGA-TTTTTAAAAGCATAA-TTGAAAAACAGAAATTGAAAATACCTCAGGTGTG-CCTGAG
* *
8386758 GCTCAACTCACCTCTCACAATATGAGTTGATTTTTTTTTGAAAGACAGAAA
126 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTTGAAAAACAGAAA
* * * * * * *
8386809 TTGAAAAACAAAAATTGAAATTGCCTCAGCATGTCCTGAGGCTTAACTCA-TCCCTCGCAATATG
1 TTGAAAAAAAAAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACT-TCTCGCAATATG
** * * * *
8386873 AGTTGATTTGGAAAAGTAGCAATT-AAAGACAGAAATT-AAAATTTCCTCAGCGTGT-CCTGAGG
65 AGTTGATTTTTAAAAGCA-TAATTGAAAAACAGAAATTGAAAA-TACCTCAG-GTGTGCCTGAGG
8386935 CTCAACTCACCTCTCGCAATATGAGTTGATTTTT
127 CTCAACTCACCTCTCGCAATATGAGTTGATTTTT
8386969 GACAAACAGA
Statistics
Matches: 297, Mismatches: 31, Indels: 27
0.84 0.09 0.08
Matches are distributed among these distances:
176 44 0.15
177 41 0.14
178 63 0.21
179 113 0.38
180 15 0.05
181 21 0.07
ACGTcount: A:0.36, C:0.19, G:0.17, T:0.28
Consensus pattern (176 bp):
TTGAAAAAAAAAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACTTCTCGCAATATGA
GTTGATTTTTAAAAGCATAATTGAAAAACAGAAATTGAAAATACCTCAGGTGTGCCTGAGGCTCA
ACTCACCTCTCGCAATATGAGTTGATTTTTTTTTGAAAAACAGAAA
Found at i:8386942 original size:85 final size:87
Alignment explanation
Indices: 8386451--8386987 Score: 575
Period size: 90 Copynumber: 6.1 Consensus size: 87
8386441 GAATTGATTT
* * * * * *
8386451 TTGAAAAATAGAATTTGAAAATACCTCAGTGTGCCCCGAGGCCCAACTCACCTATCGCAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGA
8386516 GTTGATTTTTGAAACA-TAGAAA
66 GTTGATTTTTGAAA-AGTAGAAA
* *
8386538 TTGAAATTAACAGAAATTGAAAATACCTCGGTGTGCCCTGAGGCTCAACTCACCTCTCGCAATAT
1 TTGAAA--AACAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATAT
* * *
8386603 GAGTTAATTTTTTGAAAAATATAAA
64 GAGTTGA-TTTTTGAAAAGTAGAAA
* *
8386628 TTGAAAAAAAAAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACTTCTCGCAATAT
1 TTG--AAAAACAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATAT
* * * *
8386693 GAGTTGATTTTTTAAAAGCATAAC
64 GAGTTGATTTTTGAAAAGTAGAAA
* * * *
8386717 TTGAAAAACGGAAATTGAAAATACCTCAGGTGTGACCTGAGGCTCAACTCACCTCTCACAATATG
1 TTGAAAAACAGAAATTGAAAATACCTCA-GCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATG
*
8386782 AGTTGATTTTTTTTTG-AAAGACAGAAA
65 AGTTGA----TTTTTGAAAAG-TAGAAA
* * * * * *
8386809 TTGAAAAACAAAAATTGAAATTGCCTCAGCATGTCCTGAGGCTTAACTCATCC-CTCGCAATATG
1 TTGAAAAACAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCA-CCTCTCGCAATATG
* *
8386873 AGTTGA-TTTGGAAAAGTAGCAA
65 AGTTGATTTTTGAAAAGTAGAAA
* * *
8386895 TT-AAAGACAGAAATT-AAAATTTCCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATG
1 TTGAAAAACAGAAATTGAAAA-TACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATG
*
8386958 AGTTGATTTTTGACAAA-CAGAAA
65 AGTTGATTTTTGA-AAAGTAGAAA
*
8386981 TTTAAAA
1 TTGAAAA
8386988 TACCTCAGCG
Statistics
Matches: 383, Mismatches: 48, Indels: 38
0.82 0.10 0.08
Matches are distributed among these distances:
84 5 0.01
85 54 0.14
86 21 0.05
87 39 0.10
88 38 0.10
89 74 0.19
90 76 0.20
91 38 0.10
92 38 0.10
ACGTcount: A:0.37, C:0.19, G:0.17, T:0.28
Consensus pattern (87 bp):
TTGAAAAACAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGA
GTTGATTTTTGAAAAGTAGAAA
Found at i:8387023 original size:73 final size:73
Alignment explanation
Indices: 8386901--8387043 Score: 225
Period size: 73 Copynumber: 2.0 Consensus size: 73
8386891 GCAATTAAAG
* * * *
8386901 ACAGAAATTAAAATTTCCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATT
1 ACAGAAATTAAAATTACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGAGT
8386966 TTTGACAA
66 TTTGACAA
*
8386974 ACAGAAATTTAAAA-TACCTCAGCGTGCCCCGAGGCTCAACTCACTTCTCGCAATATGAGTTGAG
1 ACAGAAA-TTAAAATTACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGAG
8387038 TTTTGA
65 TTTTGA
8387044 AAATAAAACA
Statistics
Matches: 64, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
73 58 0.91
74 6 0.09
ACGTcount: A:0.30, C:0.24, G:0.17, T:0.29
Consensus pattern (73 bp):
ACAGAAATTAAAATTACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGAGT
TTTGACAA
Found at i:8395938 original size:18 final size:18
Alignment explanation
Indices: 8395915--8395949 Score: 70
Period size: 18 Copynumber: 1.9 Consensus size: 18
8395905 TCTATCATAG
8395915 CCCGGGCAGCCTTTTCTA
1 CCCGGGCAGCCTTTTCTA
8395933 CCCGGGCAGCCTTTTCT
1 CCCGGGCAGCCTTTTCT
8395950 TCTTCTTTGT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.09, C:0.40, G:0.23, T:0.29
Consensus pattern (18 bp):
CCCGGGCAGCCTTTTCTA
Found at i:8399700 original size:17 final size:17
Alignment explanation
Indices: 8399661--8399702 Score: 50
Period size: 17 Copynumber: 2.5 Consensus size: 17
8399651 AGATATACCT
*
8399661 ACATATATATACTAAAG
1 ACATATACATACTAAAG
*
8399678 ATATATACATACATAAA-
1 ACATATACATAC-TAAAG
8399695 ACATATAC
1 ACATATAC
8399703 TAAGATTAAT
Statistics
Matches: 21, Mismatches: 3, Indels: 2
0.81 0.12 0.08
Matches are distributed among these distances:
17 17 0.81
18 4 0.19
ACGTcount: A:0.55, C:0.14, G:0.02, T:0.29
Consensus pattern (17 bp):
ACATATACATACTAAAG
Found at i:8400110 original size:19 final size:17
Alignment explanation
Indices: 8400069--8400106 Score: 60
Period size: 16 Copynumber: 2.3 Consensus size: 17
8400059 AATATATACC
8400069 TAATATAAAAAAATTAT
1 TAATATAAAAAAATTAT
8400086 TAATAT-AAAAAATTAT
1 TAATATAAAAAAATTAT
*
8400102 AAATA
1 TAATA
8400107 ATATTGCATA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
16 14 0.70
17 6 0.30
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (17 bp):
TAATATAAAAAAATTAT
Found at i:8400258 original size:14 final size:15
Alignment explanation
Indices: 8400220--8400262 Score: 52
Period size: 17 Copynumber: 2.8 Consensus size: 15
8400210 TAATAAGAGG
*
8400220 AATAATAAAAACAAT
1 AATAATAAAAATAAT
8400235 AATAGTATAAAAATAA-
1 AATA--ATAAAAATAAT
8400251 AATAATAAAAAT
1 AATAATAAAAAT
8400263 GATATGAAAA
Statistics
Matches: 25, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
14 8 0.32
15 4 0.16
16 4 0.16
17 9 0.36
ACGTcount: A:0.72, C:0.02, G:0.02, T:0.23
Consensus pattern (15 bp):
AATAATAAAAATAAT
Found at i:8400721 original size:13 final size:13
Alignment explanation
Indices: 8400703--8400736 Score: 52
Period size: 12 Copynumber: 2.7 Consensus size: 13
8400693 TGAGGGGAAG
8400703 AAGAAAAAAAAGA
1 AAGAAAAAAAAGA
8400716 AAG-AAAAAAAGA
1 AAGAAAAAAAAGA
*
8400728 GAGAAAAAA
1 AAGAAAAAA
8400737 GAGAGAGGAG
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
12 11 0.58
13 8 0.42
ACGTcount: A:0.82, C:0.00, G:0.18, T:0.00
Consensus pattern (13 bp):
AAGAAAAAAAAGA
Found at i:8400743 original size:13 final size:12
Alignment explanation
Indices: 8400707--8400742 Score: 56
Period size: 11 Copynumber: 3.1 Consensus size: 12
8400697 GGGAAGAAGA
*
8400707 AAAAAAAGAAAG
1 AAAAAAAGAGAG
8400719 AAAAAAAGAGAG
1 AAAAAAAGAGAG
8400731 -AAAAAAGAGAG
1 AAAAAAAGAGAG
8400742 A
1 A
8400743 GGAGGGAGAG
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
11 11 0.50
12 11 0.50
ACGTcount: A:0.78, C:0.00, G:0.22, T:0.00
Consensus pattern (12 bp):
AAAAAAAGAGAG
Found at i:8402344 original size:66 final size:65
Alignment explanation
Indices: 8402225--8402355 Score: 199
Period size: 66 Copynumber: 2.0 Consensus size: 65
8402215 ATTCATATAT
* *
8402225 CATTCATAACACATCTAATTAGGAACATTGATTCATTTCAATCATAGCTTCCTAATTATTTGACA
1 CATTCATAACACATCTAATTAGGAACATTGATTCATTTCAATCATAGCATCCTAATCATTTGACA
* * * *
8402290 CATTCATAATACATCTAGTTAGGAGCATTTGATTCATTTCGATCATAGCATCCTAATCATTTGAC
1 CATTCATAACACATCTAATTAGGAACA-TTGATTCATTTCAATCATAGCATCCTAATCATTTGAC
8402355 A
65 A
8402356 TAAGCATAGA
Statistics
Matches: 59, Mismatches: 6, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
65 24 0.41
66 35 0.59
ACGTcount: A:0.34, C:0.20, G:0.10, T:0.37
Consensus pattern (65 bp):
CATTCATAACACATCTAATTAGGAACATTGATTCATTTCAATCATAGCATCCTAATCATTTGACA
Found at i:8402560 original size:44 final size:44
Alignment explanation
Indices: 8402512--8402898 Score: 275
Period size: 44 Copynumber: 8.6 Consensus size: 44
8402502 CAGATCTCAT
* *
8402512 TGAAGTTTCAGTGGAGTTGATTGAAGCTA-CAAGTCTTATCTCCC
1 TGAAGTTGCAGTGGAGTAGATTGAAGCTATCAA-TCTTATCTCCC
* * * * *
8402556 TGAAGTTGCAGTGGATTAAACTGAAGATATCCAATCTTATTTCCC
1 TGAAGTTGCAGTGGAGTAGATTGAAGCTAT-CAATCTTATCTCCC
** *
8402601 TGAAGTTGCAGTGGAACAGATTGGAGCTGAATTACAGATCTTATCTCCC
1 TGAAGTTGCAGTGGAGTAGATTGAAGCT--A-T-CA-ATCTTATCTCCC
* * * * * * *
8402650 TGAGGTTGAAGTGGAGCAGATCGAAGCCATTAACCTTATCTCCC
1 TGAAGTTGCAGTGGAGTAGATTGAAGCTATCAATCTTATCTCCC
* * **
8402694 TGAAGTTGCAGTGGAGCAGGTT-AAAATCA-CAAGTCTTATCTCCC
1 TGAAGTTGCAGTGGAGTAGATTGAAGCT-ATCAA-TCTTATCTCCC
* * * *
8402738 TGAAGTTGTAGTGGAGTAGACTGAAGATATCCAATCTTATTTCCC
1 TGAAGTTGCAGTGGAGTAGATTGAAGCTAT-CAATCTTATCTCCC
* *
8402783 TGAAGTTGCAGTGGAATAGATTGAAGCTAAATTACAGATCTTATCTCTC
1 TGAAGTTGCAGTGGAGTAGATTGAAGCT--A-T-CA-ATCTTATCTCCC
* * * * *
8402832 TGAAGTTCCAGTAGAGCAGATT-AA---AACAGATCTTGTCTCCC
1 TGAAGTTGCAGTGGAGTAGATTGAAGCTATCA-ATCTTATCTCCC
* *
8402873 TGAAGTTGCAGTGGAGCAGATCGAAG
1 TGAAGTTGCAGTGGAGTAGATTGAAG
8402899 ACGGCGAACC
Statistics
Matches: 271, Mismatches: 55, Indels: 35
0.75 0.15 0.10
Matches are distributed among these distances:
41 32 0.12
42 2 0.01
43 5 0.02
44 82 0.30
45 71 0.26
46 7 0.03
47 3 0.01
48 8 0.03
49 61 0.23
ACGTcount: A:0.29, C:0.18, G:0.23, T:0.29
Consensus pattern (44 bp):
TGAAGTTGCAGTGGAGTAGATTGAAGCTATCAATCTTATCTCCC
Found at i:8402606 original size:45 final size:45
Alignment explanation
Indices: 8402545--8403250 Score: 251
Period size: 45 Copynumber: 15.7 Consensus size: 45
8402535 AAGCTACAAG
** *
8402545 TCTTATCTCCCTGAAGTTGCAGTGGATTAAACTGAAGATATCCAA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGATATCCAA
* * * * * *
8402590 TCTTATTTCCCTGAAGTTGCAGTGGAACAGATTGGAGCTGAATTACAGA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGAT--A-TCCA-A
* * ** *
8402639 TCTTATCTCCCTGAGGTTGAAGTGGAGCAGA-TCGAAGCCAT-TAA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACT-GAAGATATCCAA
* * *
8402683 CCTTATCTCCCTGAAGTTGCAGTGGAGCAG-GTTAA-A-ATCACAA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGATATC-CAA
* *
8402726 GTCTTATCTCCCTGAAGTTGTAGTGGAGTAGACTGAAGATATCCAA
1 -TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGATATCCAA
* ** * * *
8402772 TCTTATTTCCCTGAAGTTGCAGTGGAATAGATTGAAGCTAAATTACAGA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAG--ATA-TCCA-A
* * * *
8402821 TCTTATCTCTCTGAAGTTCCAGTAGAGCAGA-TTAA-A-A--CAGA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGATATCCA-A
* *** *
8402862 TCTTGTCTCCCTGAAGTTGCAGTGGAGCAGA-TCGAAGACGGCGAA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACT-GAAGATATCCAA
* ** * * * * * **
8402907 CCTTGCCTTCCTGAAGTTGCAGTGAAGCGGAGTTAAGCCA-CC-A
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGATATCCAA
* * ** * * * *
8402950 TCCTATCT-CCTTAAGCAGTAGTGGAGTAG-GTCGAA-ACTA--CAGG
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACT-GAAGA-TATCCA-A
* * *
8402993 TCTTATCTCCCTGAAGTTGTAGTGGAGCAGACTGAAGATAACAAA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGATATCCAA
* * * * * *
8403038 T-TCCATTTCCCTGAAGTTACAGTGGAACAGATTGAAGCTATGAATAAACAGA
1 TCT-TATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAG--AT--AT--CCA-A
* * * *
8403090 TCTTATCTCTCTGAAGTTGCAAG-GGAGCA-AATCAA-A-A-CAAA
1 TCTTATCTCCCTGAAGTTGC-AGTGGAGCAGACTGAAGATATCCAA
* ** * ** * *
8403131 CCTTATCTCCCTGAAGTTGCAGTCAAACAGGTTGAAG-TCA-CTAG
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGAT-ATCCAA
* * * **
8403175 TCTTATCTCCCTGAAATTGCAGTAGG-GCAGATTGAAGATAACGGA
1 TCTTATCTCCCTGAAGTTGCAGT-GGAGCAGACTGAAGATATCCAA
* * *
8403220 TCTTATCTCCTTAAAGTTGCAATGGAGCAGA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGA
8403251 TCAAGCTACA
Statistics
Matches: 492, Mismatches: 119, Indels: 100
0.69 0.17 0.14
Matches are distributed among these distances:
40 2 0.00
41 59 0.12
42 23 0.05
43 17 0.03
44 117 0.24
45 159 0.32
46 8 0.02
47 9 0.02
48 11 0.02
49 59 0.12
51 5 0.01
52 20 0.04
53 3 0.01
ACGTcount: A:0.30, C:0.20, G:0.22, T:0.28
Consensus pattern (45 bp):
TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGATATCCAA
Found at i:8402819 original size:182 final size:179
Alignment explanation
Indices: 8402540--8402891 Score: 524
Period size: 182 Copynumber: 1.9 Consensus size: 179
8402530 GATTGAAGCT
*
8402540 ACAAGTCTTATCTCCCTGAAGTTGCAGTGGATTAAACTGAAGATATCCAATCTTATTTCCCTGAA
1 ACAAGTCTTATCTCCCTGAAGTTGCAGTGGAGTAAACTGAAGATATCCAATCTTATTTCCCTGAA
* * * * *
8402605 GTTGCAGTGGAACAGATTGGAGCTGAATTACAGATCTTATCTCCCTGAGGTTGAAGTGGAGCAGA
66 GTTGCAGTGGAACAGATTGAAGCTAAATTACAGATCTTATCTCCCTGAAGTTCAAGTAGAGCAGA
**
8402670 TCGAAGCCATTAACCTTATCTCCCTGAAGTTGCAGTGGAGCAGGTTAAAATC
131 T-GAAAACA--AACCTTATCTCCCTGAAGTTGCAGTGGAGCAGGTTAAAATC
* *
8402722 ACAAGTCTTATCTCCCTGAAGTTGTAGTGGAGTAGACTGAAGATATCCAATCTTATTTCCCTGAA
1 ACAAGTCTTATCTCCCTGAAGTTGCAGTGGAGTAAACTGAAGATATCCAATCTTATTTCCCTGAA
* * *
8402787 GTTGCAGTGGAATAGATTGAAGCTAAATTACAGATCTTATCTCTCTGAAGTTCCAGTAGAGCAGA
66 GTTGCAGTGGAACAGATTGAAGCTAAATTACAGATCTTATCTCCCTGAAGTTCAAGTAGAGCAGA
* * * *
8402852 TTAAAACAGATCTTGTCTCCCTGAAGTTGCAGTGGAGCAG
131 TGAAAACAAACCTTATCTCCCTGAAGTTGCAGTGGAGCAG
8402892 ATCGAAGACG
Statistics
Matches: 153, Mismatches: 17, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
179 29 0.19
181 4 0.03
182 120 0.78
ACGTcount: A:0.30, C:0.19, G:0.22, T:0.29
Consensus pattern (179 bp):
ACAAGTCTTATCTCCCTGAAGTTGCAGTGGAGTAAACTGAAGATATCCAATCTTATTTCCCTGAA
GTTGCAGTGGAACAGATTGAAGCTAAATTACAGATCTTATCTCCCTGAAGTTCAAGTAGAGCAGA
TGAAAACAAACCTTATCTCCCTGAAGTTGCAGTGGAGCAGGTTAAAATC
Found at i:8402835 original size:49 final size:46
Alignment explanation
Indices: 8402539--8402899 Score: 271
Period size: 45 Copynumber: 7.9 Consensus size: 46
8402529 TGATTGAAGC
** * * *
8402539 TACAAGTCTTATCTCCCTGAAGTTGCAGTGGATTAAACTGAAGATA-
1 TACAA-TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGAAAT
* * * * *
8402585 TCCAATCTTATTTCCCTGAAGTTGCAGTGGAACAGATTGGAGCTGAAT
1 TACAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAG--AAAT
* * * **
8402633 TACAGATCTTATCTCCCTGAGGTTGAAGTGGAGCAGATCGAAGCCAT
1 TACA-ATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGAAAT
* *
8402680 T--AACCTTATCTCCCTGAAGTTGCAGTGGAGCAGGTT--A-AAAT
1 TACAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGAAAT
* * * * *
8402721 CACAAGTCTTATCTCCCTGAAGTTGTAGTGGAGTAGACTGAAGATA-
1 TACAA-TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGAAAT
* * **
8402767 TCCAATCTTATTTCCCTGAAGTTGCAGTGGAATAGATTGAAGCTAAAT
1 TACAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAG--AAAT
* * *
8402815 TACAGATCTTATCTCTCTGAAGTTCCAGTAGAGCAGATT----AAA-
1 TACA-ATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGAAAT
* *
8402857 -ACAGATCTTGTCTCCCTGAAGTTGCAGTGGAGCAGATCGAAGA
1 TACA-ATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGA
8402900 CGGCGAACCT
Statistics
Matches: 246, Mismatches: 51, Indels: 37
0.74 0.15 0.11
Matches are distributed among these distances:
41 35 0.14
42 1 0.00
43 5 0.02
44 57 0.23
45 66 0.27
46 8 0.03
47 8 0.03
48 6 0.02
49 60 0.24
ACGTcount: A:0.30, C:0.19, G:0.22, T:0.29
Consensus pattern (46 bp):
TACAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGAAAT
Found at i:8402876 original size:41 final size:41
Alignment explanation
Indices: 8402816--8402893 Score: 120
Period size: 41 Copynumber: 1.9 Consensus size: 41
8402806 AAGCTAAATT
*
8402816 ACAGATCTTATCTCTCTGAAGTTCCAGTAGAGCAGATTAAA
1 ACAGATCTTATCTCCCTGAAGTTCCAGTAGAGCAGATTAAA
* * *
8402857 ACAGATCTTGTCTCCCTGAAGTTGCAGTGGAGCAGAT
1 ACAGATCTTATCTCCCTGAAGTTCCAGTAGAGCAGAT
8402894 CGAAGACGGC
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
41 33 1.00
ACGTcount: A:0.29, C:0.21, G:0.22, T:0.28
Consensus pattern (41 bp):
ACAGATCTTATCTCCCTGAAGTTCCAGTAGAGCAGATTAAA
Found at i:8402920 original size:135 final size:138
Alignment explanation
Indices: 8402684--8402930 Score: 306
Period size: 135 Copynumber: 1.8 Consensus size: 138
8402674 AGCCATTAAC
* * * *
8402684 CTTATCTCCCTGAAGTTGCAGTGGAGCAGGTTAAAATCACAAGTCTTATCTCCCTGAAGTTGTAG
1 CTTATCTCCCTGAAGTTCCAGTAGAGCAGATTAAAATCACAAGTCTTATCTCCCTGAAGTTGCAG
* * * * *
8402749 TGGAGTAGACTGAAGATATCCAATCTTATTTCCCTGAAGTTGCAGTGGAATAGATTGAAGCTAAA
66 TGGAGCAGACTGAAGACAGCCAACCTTACTTCCCTGAAGTTGCAGTGGAATAGATTGAAGCTAAA
8402814 TTACAGAT
131 TTACAGAT
* * *
8402822 CTTATCTCTCTGAAGTTCCAGTAGAGCAGATTAAAA-CA-GA-TCTTGTCTCCCTGAAGTTGCAG
1 CTTATCTCCCTGAAGTTCCAGTAGAGCAGATTAAAATCACAAGTCTTATCTCCCTGAAGTTGCAG
* * *
8402884 TGGAGCAGA-TCGAAGACGGCGAACCTTGCCTT-CCTGAAGTTGCAGTG
66 TGGAGCAGACT-GAAGACAGCCAACCTT-ACTTCCCTGAAGTTGCAGTG
8402931 AAGCGGAGTT
Statistics
Matches: 92, Mismatches: 15, Indels: 7
0.81 0.13 0.06
Matches are distributed among these distances:
134 1 0.01
135 54 0.59
136 3 0.03
137 2 0.02
138 32 0.35
ACGTcount: A:0.28, C:0.20, G:0.23, T:0.29
Consensus pattern (138 bp):
CTTATCTCCCTGAAGTTCCAGTAGAGCAGATTAAAATCACAAGTCTTATCTCCCTGAAGTTGCAG
TGGAGCAGACTGAAGACAGCCAACCTTACTTCCCTGAAGTTGCAGTGGAATAGATTGAAGCTAAA
TTACAGAT
Found at i:8404767 original size:11 final size:11
Alignment explanation
Indices: 8404751--8404777 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
8404741 ATTTTGTATA
8404751 ATATTTAATTT
1 ATATTTAATTT
8404762 ATATTTAATTT
1 ATATTTAATTT
8404773 ATATT
1 ATATT
8404778 AATACATATA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (11 bp):
ATATTTAATTT
Found at i:8405018 original size:39 final size:39
Alignment explanation
Indices: 8404956--8405071 Score: 114
Period size: 39 Copynumber: 2.9 Consensus size: 39
8404946 TTCAAGATTA
*
8404956 TTTCATGTATATATTGTTATATTCTATATTGATTTGTTAT-T
1 TTTCAT-TATATATTGTT-TATTCTATATT-ATTTATTATAT
* * *
8404997 TTGTCA-TGTATATTGTTTATTCTTTATTCTTTATTATAT
1 TT-TCATTATATATTGTTTATTCTATATTATTTATTATAT
*
8405036 TTTCATTATATATTGTTTATGT-TAT-TTTTTTATTAT
1 TTTCATTATATATTGTTTAT-TCTATATTATTTATTAT
8405072 TGTCTGTATA
Statistics
Matches: 64, Mismatches: 7, Indels: 11
0.78 0.09 0.13
Matches are distributed among these distances:
38 20 0.31
39 28 0.44
40 11 0.17
41 2 0.03
42 3 0.05
ACGTcount: A:0.22, C:0.05, G:0.08, T:0.65
Consensus pattern (39 bp):
TTTCATTATATATTGTTTATTCTATATTATTTATTATAT
Found at i:8407401 original size:46 final size:44
Alignment explanation
Indices: 8407295--8407402 Score: 135
Period size: 44 Copynumber: 2.4 Consensus size: 44
8407285 TGTCTTTGAC
** * * * *
8407295 ATGGACTTACATGAATTATTCCTGTCTCCAATGCCATATATGAT
1 ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATATATAAT
*
8407339 ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATATTTCTAAT
1 ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATA--TATAAT
8407385 ATGGACTTACATGGCTCA
1 ATGGACTTACATGGCTCA
8407403 TTTCTATTCT
Statistics
Matches: 55, Mismatches: 7, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
44 33 0.60
46 22 0.40
ACGTcount: A:0.29, C:0.23, G:0.15, T:0.33
Consensus pattern (44 bp):
ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATATATAAT
Found at i:8411581 original size:13 final size:13
Alignment explanation
Indices: 8411563--8411589 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
8411553 GCTTCATACC
8411563 CTTTTCTCAAACT
1 CTTTTCTCAAACT
8411576 CTTTTCTCAAACT
1 CTTTTCTCAAACT
8411589 C
1 C
8411590 CTGAACTCAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.22, C:0.33, G:0.00, T:0.44
Consensus pattern (13 bp):
CTTTTCTCAAACT
Found at i:8412357 original size:22 final size:22
Alignment explanation
Indices: 8412332--8412373 Score: 75
Period size: 22 Copynumber: 1.9 Consensus size: 22
8412322 ATAAGCTCCT
*
8412332 TTACATTCAATTAATAAATGTA
1 TTACATTCAATCAATAAATGTA
8412354 TTACATTCAATCAATAAATG
1 TTACATTCAATCAATAAATG
8412374 ATCTCATGGT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.45, C:0.12, G:0.05, T:0.38
Consensus pattern (22 bp):
TTACATTCAATCAATAAATGTA
Found at i:8413580 original size:14 final size:15
Alignment explanation
Indices: 8413559--8413600 Score: 52
Period size: 14 Copynumber: 2.9 Consensus size: 15
8413549 GTTTGATTGG
8413559 TAGTAAAATGTTTTC
1 TAGTAAAATGTTTTC
* *
8413574 -CGTAAAATGATTTC
1 TAGTAAAATGTTTTC
8413588 TAG-AAAATGTTTT
1 TAGTAAAATGTTTT
8413601 ACTTTTCTGT
Statistics
Matches: 22, Mismatches: 4, Indels: 3
0.76 0.14 0.10
Matches are distributed among these distances:
14 21 0.95
15 1 0.05
ACGTcount: A:0.36, C:0.07, G:0.14, T:0.43
Consensus pattern (15 bp):
TAGTAAAATGTTTTC
Found at i:8413613 original size:34 final size:35
Alignment explanation
Indices: 8413569--8413635 Score: 100
Period size: 34 Copynumber: 1.9 Consensus size: 35
8413559 TAGTAAAATG
*
8413569 TTTTCCGTAAAATGATTT-CTAGAAAATGTTTTAC
1 TTTTCCGTAAAATGATTTACTAGAAAATATTTTAC
* *
8413603 TTTTCTGTAAAATGATTTACTGGAAAATATTTT
1 TTTTCCGTAAAATGATTTACTAGAAAATATTTT
8413636 CTGGTGTTTG
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
34 17 0.59
35 12 0.41
ACGTcount: A:0.33, C:0.09, G:0.12, T:0.46
Consensus pattern (35 bp):
TTTTCCGTAAAATGATTTACTAGAAAATATTTTAC
Found at i:8416485 original size:25 final size:25
Alignment explanation
Indices: 8416436--8416485 Score: 73
Period size: 25 Copynumber: 2.0 Consensus size: 25
8416426 AGAAGAGAAG
8416436 ATGAAGAACAGAAGAAGAAAAAGGA
1 ATGAAGAACAGAAGAAGAAAAAGGA
** *
8416461 ATGAAGAATGGAAGAAGAAGAAGGA
1 ATGAAGAACAGAAGAAGAAAAAGGA
8416486 GCCTTACCTG
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.60, C:0.02, G:0.32, T:0.06
Consensus pattern (25 bp):
ATGAAGAACAGAAGAAGAAAAAGGA
Found at i:8416568 original size:18 final size:17
Alignment explanation
Indices: 8416545--8416578 Score: 59
Period size: 18 Copynumber: 1.9 Consensus size: 17
8416535 TTTGCAACAC
8416545 AAGGGGAAGGGAGAAGGG
1 AAGGGGAAGGGA-AAGGG
8416563 AAGGGGAAGGGAAAGG
1 AAGGGGAAGGGAAAGG
8416579 TTAAAGGGGA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 4 0.25
18 12 0.75
ACGTcount: A:0.41, C:0.00, G:0.59, T:0.00
Consensus pattern (17 bp):
AAGGGGAAGGGAAAGGG
Found at i:8420810 original size:16 final size:16
Alignment explanation
Indices: 8420785--8420816 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
8420775 ATATAGGTCC
*
8420785 ATACCTACTTCCTTCA
1 ATACCAACTTCCTTCA
8420801 ATACCAACTTCCTTCA
1 ATACCAACTTCCTTCA
8420817 CCCATTCTGC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.28, C:0.38, G:0.00, T:0.34
Consensus pattern (16 bp):
ATACCAACTTCCTTCA
Found at i:8424988 original size:21 final size:21
Alignment explanation
Indices: 8424929--8424998 Score: 59
Period size: 21 Copynumber: 3.1 Consensus size: 21
8424919 TTCATTAAAT
* *
8424929 AAAAATTTTAAAAATATAATAA
1 AAAAATATTAAAAA-AAAATAA
* * *
8424951 ATCAAATATATTTAAAAACATTAA
1 A--AAA-ATATTAAAAAAAAATAA
8424975 AAAAATATTAAAAAAAAATAA
1 AAAAATATTAAAAAAAAATAA
8424996 AAA
1 AAA
8424999 TGATACTAAA
Statistics
Matches: 38, Mismatches: 7, Indels: 7
0.73 0.13 0.13
Matches are distributed among these distances:
21 17 0.45
22 4 0.11
24 9 0.24
25 8 0.21
ACGTcount: A:0.70, C:0.03, G:0.00, T:0.27
Consensus pattern (21 bp):
AAAAATATTAAAAAAAAATAA
Found at i:8426456 original size:24 final size:24
Alignment explanation
Indices: 8426401--8426471 Score: 70
Period size: 24 Copynumber: 2.9 Consensus size: 24
8426391 TTAAACGGTT
* * *
8426401 TTATATTTTATTTATTTTAAAATTC
1 TTATATATTAGTTATATT-AAATTC
*
8426426 TTATATATTAGTTATATTAAATTG
1 TTATATATTAGTTATATTAAATTC
* * *
8426450 TTGTATATTATTTATTTTAAAT
1 TTATATATTAGTTATATTAAAT
8426472 CGTTTTAGAT
Statistics
Matches: 39, Mismatches: 7, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
24 24 0.62
25 15 0.38
ACGTcount: A:0.34, C:0.01, G:0.04, T:0.61
Consensus pattern (24 bp):
TTATATATTAGTTATATTAAATTC
Found at i:8426485 original size:27 final size:26
Alignment explanation
Indices: 8426371--8426734 Score: 296
Period size: 26 Copynumber: 13.9 Consensus size: 26
8426361 TTTATTCATC
**
8426371 TTTTATATACATTATTTATTTTAAACGG
1 TTTTATAT--ATTATTTATTTTAAATTG
* *
8426399 TTTTATATTTTATTTATTTTAAAAT-
1 TTTTATATATTATTTATTTTAAATTG
* * *
8426424 TCTTATATATTAGTTATATTAAATTG
1 TTTTATATATTATTTATTTTAAATTG
* *
8426450 --TTGTATATTATTTATTTTAAATCG
1 TTTTATATATTATTTATTTTAAATTG
* *
8426474 TTTTAGATTATTATTAATTTTAAATTG
1 TTTTATA-TATTATTTATTTTAAATTG
* *
8426501 TTTCATATATTATTTATTTTGAATTG
1 TTTTATATATTATTTATTTTAAATTG
8426527 TTTTATATATTATTTTATTTTAAATTG
1 TTTTATATATTA-TTTATTTTAAATTG
*
8426554 TTTTATATATTTTATTTATTTTAAATTT
1 TTTTATATA--TTATTTATTTTAAATTG
* **
8426582 TTTTCCACATATTA-TTCCTTTAAATTG
1 TTTT--ATATATTATTTATTTTAAATTG
* *
8426609 TTTTATGTATTGTTTATTTTAAATTG
1 TTTTATATATTATTTATTTTAAATTG
* *
8426635 CTTTA-A-ATTATTTA-TTTCAATATG
1 TTTTATATATTATTTATTTTAAAT-TG
*
8426659 TTTTATACT-TTATTTATATTAAATCAT-
1 TTTTATA-TATTATTTATTTTAAAT--TG
* * ***
8426686 TTTTATATATTGTTTATTTTGAACCA
1 TTTTATATATTATTTATTTTAAATTG
* *
8426712 TTTTTTGTATTATTTATTTTAAA
1 TTTTATATATTATTTATTTTAAA
8426735 ATTTTAATTA
Statistics
Matches: 270, Mismatches: 48, Indels: 38
0.76 0.13 0.11
Matches are distributed among these distances:
23 6 0.02
24 33 0.12
25 26 0.10
26 87 0.32
27 81 0.30
28 30 0.11
29 3 0.01
30 4 0.01
ACGTcount: A:0.30, C:0.04, G:0.05, T:0.61
Consensus pattern (26 bp):
TTTTATATATTATTTATTTTAAATTG
Found at i:8426542 original size:22 final size:22
Alignment explanation
Indices: 8426412--8426543 Score: 84
Period size: 24 Copynumber: 5.4 Consensus size: 22
8426402 TATATTTTAT
* *
8426412 TTATTTTAAAATTCTTATATATTA
1 TTATTTT-AAATTGTTTTATA-TA
* *
8426436 GTTATATTAAATTGTTGTATATTA
1 -TTATTTTAAATTGTTTTATA-TA
*
8426460 TTTATTTTAAATCGTTTTAGATTATTA
1 -TTATTTTAAATTGTTTT--A-TA-TA
8426487 TTAATTTTAAATTGTTTCATATATTA
1 TT-ATTTTAAATTGTTT--TATA-TA
*
8426513 TTTATTTTGAATTGTTTTATATA
1 -TTATTTTAAATTGTTTTATATA
8426536 TTATTTTA
1 TTATTTTA
8426544 TTTTAAATTG
Statistics
Matches: 90, Mismatches: 10, Indels: 17
0.77 0.09 0.15
Matches are distributed among these distances:
22 7 0.08
23 2 0.02
24 32 0.36
25 6 0.07
26 21 0.23
27 21 0.23
29 1 0.01
ACGTcount: A:0.32, C:0.02, G:0.06, T:0.60
Consensus pattern (22 bp):
TTATTTTAAATTGTTTTATATA
Found at i:8426605 original size:55 final size:52
Alignment explanation
Indices: 8426381--8426682 Score: 244
Period size: 53 Copynumber: 5.8 Consensus size: 52
8426371 TTTTATATAC
* ** * * * *
8426381 ATTATTTATTTTAAACGGTTTTATATTTTATTTATTTTAAAAT-TCTTATAT
1 ATTATTTACTTTAAATTGTTTTATATATTATTTATTTTAAATTGTTTTACAT
* * * *
8426432 ATTAGTTA-TATTAAATTG--TTGTATATTATTTATTTTAAATCGTTTTAGATT
1 ATTATTTACT-TTAAATTGTTTTATATATTATTTATTTTAAATTGTTTTACA-T
* * * * *
8426483 ATTATTAATTTTAAATTGTTTCATATATTATTTATTTTGAATTGTTTTATAT
1 ATTATTTACTTTAAATTGTTTTATATATTATTTATTTTAAATTGTTTTACAT
* *
8426535 ATTATTTTATTTTAAATTGTTTTATATATTTTATTTATTTTAAATTTTTTTCCACAT
1 ATTA-TTTACTTTAAATTGTTTTATATA--TTATTTATTTTAAATTGTTTT--ACAT
* * * *
8426592 ATTA-TTCCTTTAAATTGTTTTATGTATTGTTTATTTTAAATTGCTTTA-A-
1 ATTATTTACTTTAAATTGTTTTATATATTATTTATTTTAAATTGTTTTACAT
* *
8426641 ATTATTTA-TTTCAATATGTTTTATACT-TTATTTATATTAAAT
1 ATTATTTACTTTAAAT-TGTTTTATA-TATTATTTATTTTAAAT
8426683 CATTTTTATA
Statistics
Matches: 205, Mismatches: 32, Indels: 29
0.77 0.12 0.11
Matches are distributed among these distances:
49 29 0.14
50 30 0.15
51 30 0.15
52 6 0.03
53 65 0.32
55 38 0.19
57 7 0.03
ACGTcount: A:0.30, C:0.04, G:0.05, T:0.61
Consensus pattern (52 bp):
ATTATTTACTTTAAATTGTTTTATATATTATTTATTTTAAATTGTTTTACAT
Found at i:8426625 original size:108 final size:103
Alignment explanation
Indices: 8426398--8426682 Score: 251
Period size: 108 Copynumber: 2.7 Consensus size: 103
8426388 ATTTTAAACG
* * * * *
8426398 GTTTTATATTTTATTTATTTTAAAATT-CTTATATATTAGTTATATTAAAT-TGTTGTATA--TT
1 GTTTCATATATTATTTATTTT-AAATTGCTT-TAAATTATTTAT-TTAAATATGTTTTATACTTT
* ** * **
8426459 ATTTATTTTAAATCGTTTT--AGATTATTATTAATTTTAAATT
63 ATTTATATTAAATTTTTTTCCACA-TATTATT-CCTTTAAATT
* * *
8426500 GTTTCATATATTATTTATTTTGAATTGTTTTATATATTATTTTATTTTAAAT-TGTTTTATATAT
1 GTTTCATATATTATTTATTTTAAATTGCTTTA-A-ATTA-TTTA-TTTAAATATG-TTT-TATAC
*
8426564 TTTATTTATTTTAAATTTTTTTCCACATATTATTCCTTTAAATT
60 TTTATTTATATTAAATTTTTTTCCACATATTATTCCTTTAAATT
* * * *
8426608 GTTTTATGTATTGTTTATTTTAAATTGCTTTAAATTATTTATTTCAATATGTTTTATACTTTATT
1 GTTTCATATATTATTTATTTTAAATTGCTTTAAATTATTTATTTAAATATGTTTTATACTTTATT
8426673 TATATTAAAT
66 TATATTAAAT
8426683 CATTTTTATA
Statistics
Matches: 151, Mismatches: 20, Indels: 23
0.78 0.10 0.12
Matches are distributed among these distances:
101 6 0.04
102 21 0.14
103 23 0.15
104 20 0.13
105 9 0.06
106 8 0.05
107 1 0.01
108 54 0.36
109 7 0.05
110 2 0.01
ACGTcount: A:0.30, C:0.04, G:0.05, T:0.61
Consensus pattern (103 bp):
GTTTCATATATTATTTATTTTAAATTGCTTTAAATTATTTATTTAAATATGTTTTATACTTTATT
TATATTAAATTTTTTTCCACATATTATTCCTTTAAATT
Found at i:8431142 original size:18 final size:17
Alignment explanation
Indices: 8431119--8431160 Score: 61
Period size: 17 Copynumber: 2.6 Consensus size: 17
8431109 GATAATGAAC
8431119 AATAATAATT--TTAAA
1 AATAATAATTAATTAAA
8431134 AATAATAATTAATTAAA
1 AATAATAATTAATTAAA
*
8431151 AATAAAAATT
1 AATAATAATT
8431161 TAATATATAA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
15 10 0.42
17 14 0.58
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (17 bp):
AATAATAATTAATTAAA
Found at i:8432650 original size:18 final size:18
Alignment explanation
Indices: 8432627--8432664 Score: 67
Period size: 18 Copynumber: 2.1 Consensus size: 18
8432617 AATATATATT
8432627 AACCCAAGTACCCAACCC
1 AACCCAAGTACCCAACCC
*
8432645 AACCCAATTACCCAACCC
1 AACCCAAGTACCCAACCC
8432663 AA
1 AA
8432665 TCATAAAAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.42, C:0.47, G:0.03, T:0.08
Consensus pattern (18 bp):
AACCCAAGTACCCAACCC
Found at i:8432657 original size:13 final size:13
Alignment explanation
Indices: 8432641--8432665 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
8432631 CAAGTACCCA
8432641 ACCCAACCCAATT
1 ACCCAACCCAATT
8432654 ACCCAACCCAAT
1 ACCCAACCCAAT
8432666 CATAAAAATT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.48, G:0.00, T:0.12
Consensus pattern (13 bp):
ACCCAACCCAATT
Found at i:8432699 original size:14 final size:13
Alignment explanation
Indices: 8432667--8432730 Score: 55
Period size: 13 Copynumber: 5.1 Consensus size: 13
8432657 CAACCCAATC
*
8432667 ATAAAAATT-ACA
1 ATAAAAATTAAAA
8432679 A-AAAAATTAATAA
1 ATAAAAATTAA-AA
8432692 ATAAAAA-TAAAA
1 ATAAAAATTAAAA
* *
8432704 ATCTAAAAGTAAAA
1 AT-AAAAATTAAAA
8432718 ATAAAAA-TAAAA
1 ATAAAAATTAAAA
8432730 A
1 A
8432731 CATATAATTT
Statistics
Matches: 44, Mismatches: 3, Indels: 10
0.77 0.05 0.18
Matches are distributed among these distances:
11 7 0.16
12 12 0.27
13 13 0.30
14 12 0.27
ACGTcount: A:0.75, C:0.03, G:0.02, T:0.20
Consensus pattern (13 bp):
ATAAAAATTAAAA
Found at i:8432705 original size:20 final size:20
Alignment explanation
Indices: 8432680--8432725 Score: 67
Period size: 20 Copynumber: 2.3 Consensus size: 20
8432670 AAAATTACAA
8432680 AAAAAT-TAATAAATAAAAAT
1 AAAAATCTAA-AAATAAAAAT
*
8432700 AAAAATCTAAAAGTAAAAAT
1 AAAAATCTAAAAATAAAAAT
8432720 AAAAAT
1 AAAAAT
8432726 AAAAACATAT
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
20 21 0.88
21 3 0.12
ACGTcount: A:0.74, C:0.02, G:0.02, T:0.22
Consensus pattern (20 bp):
AAAAATCTAAAAATAAAAAT
Found at i:8432729 original size:5 final size:6
Alignment explanation
Indices: 8432667--8432730 Score: 58
Period size: 6 Copynumber: 10.2 Consensus size: 6
8432657 CAACCCAATC
* * *
8432667 ATAAAA ATTACAA A-AAAA TTAATAA ATAAAA ATAAAA ATCTAAAA GTAAAA
1 ATAAAA A-TAAAA ATAAAA ATAA-AA ATAAAA ATAAAA A--TAAAA ATAAAA
8432718 ATAAAA ATAAAA A
1 ATAAAA ATAAAA A
8432731 CATATAATTT
Statistics
Matches: 47, Mismatches: 6, Indels: 10
0.75 0.10 0.16
Matches are distributed among these distances:
5 3 0.06
6 29 0.62
7 10 0.21
8 5 0.11
ACGTcount: A:0.75, C:0.03, G:0.02, T:0.20
Consensus pattern (6 bp):
ATAAAA
Found at i:8432768 original size:9 final size:9
Alignment explanation
Indices: 8432750--8432844 Score: 127
Period size: 9 Copynumber: 10.6 Consensus size: 9
8432740 TTATACAAAA
*
8432750 TAATTTGGT
1 TAATTCGGT
8432759 TAATTCGGT
1 TAATTCGGT
*
8432768 TAATTTGGT
1 TAATTCGGT
8432777 TAATTCGGT
1 TAATTCGGT
* *
8432786 TAATTTGGG
1 TAATTCGGT
*
8432795 TAATTCGGG
1 TAATTCGGT
*
8432804 TAATTCGGG
1 TAATTCGGT
8432813 TAATTCGGT
1 TAATTCGGT
*
8432822 TAATTCGAT
1 TAATTCGGT
8432831 TAATTCGGT
1 TAATTCGGT
8432840 TAATT
1 TAATT
8432845 TTATACTTAT
Statistics
Matches: 77, Mismatches: 9, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
9 77 1.00
ACGTcount: A:0.24, C:0.07, G:0.23, T:0.45
Consensus pattern (9 bp):
TAATTCGGT
Found at i:8433304 original size:34 final size:34
Alignment explanation
Indices: 8433261--8433326 Score: 114
Period size: 34 Copynumber: 1.9 Consensus size: 34
8433251 TCATTCTTCA
*
8433261 AAGTCAATGATGCAGGATCTTTAACACGGACTCC
1 AAGTCAATGATGCAAGATCTTTAACACGGACTCC
*
8433295 AAGTCAATGATGCAAGATCTTTAACATGGACT
1 AAGTCAATGATGCAAGATCTTTAACACGGACT
8433327 ATATGAAAAA
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
34 30 1.00
ACGTcount: A:0.35, C:0.20, G:0.20, T:0.26
Consensus pattern (34 bp):
AAGTCAATGATGCAAGATCTTTAACACGGACTCC
Found at i:8434379 original size:21 final size:19
Alignment explanation
Indices: 8434357--8434394 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 19
8434347 TAATATCTTA
8434357 AAAGATAAAAAAAAGTTAAT
1 AAAGATAAAAAAAA-TTAAT
*
8434377 AAATATAAAAAAAATTAA
1 AAAGATAAAAAAAATTAA
8434395 ACTATAAACT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 4 0.24
20 13 0.76
ACGTcount: A:0.74, C:0.00, G:0.05, T:0.21
Consensus pattern (19 bp):
AAAGATAAAAAAAATTAAT
Found at i:8434976 original size:30 final size:30
Alignment explanation
Indices: 8434930--8435020 Score: 103
Period size: 30 Copynumber: 3.0 Consensus size: 30
8434920 TTGTAATATA
* *
8434930 ATATA-TAAATTTTGATTTGATTTAATTGT
1 ATATATTAAAATTTGATTTGATTTAATTAT
*
8434959 ATATATTAAAATTTGATTTGAATTAATTAT
1 ATATATTAAAATTTGATTTGATTTAATTAT
* * * *
8434989 ATAAATAAAAAATTGATATTAATTTAATTAT
1 ATATATTAAAATTTGAT-TTGATTTAATTAT
8435020 A
1 A
8435021 AATCTTTAAA
Statistics
Matches: 52, Mismatches: 8, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
29 5 0.10
30 35 0.67
31 12 0.23
ACGTcount: A:0.45, C:0.00, G:0.07, T:0.48
Consensus pattern (30 bp):
ATATATTAAAATTTGATTTGATTTAATTAT
Found at i:8434993 original size:25 final size:25
Alignment explanation
Indices: 8434918--8434993 Score: 64
Period size: 30 Copynumber: 2.8 Consensus size: 25
8434908 TTTTAATTAA
*
8434918 ATTTGTAATATAA-TATATAAATTTTG
1 ATTTG-AAT-TAATTATATAAAATTTG
*
8434944 ATTTGATTTAATTGTATATATTAAAATTTG
1 ATTTGAATTAA---T-TATA-TAAAATTTG
8434974 ATTTGAATTAATTATATAAA
1 ATTTGAATTAATTATATAAA
8434994 TAAAAAATTG
Statistics
Matches: 41, Mismatches: 3, Indels: 13
0.72 0.05 0.23
Matches are distributed among these distances:
24 3 0.07
25 6 0.15
26 9 0.22
27 1 0.02
29 4 0.10
30 18 0.44
ACGTcount: A:0.42, C:0.00, G:0.08, T:0.50
Consensus pattern (25 bp):
ATTTGAATTAATTATATAAAATTTG
Found at i:8437051 original size:19 final size:19
Alignment explanation
Indices: 8437016--8437053 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
8437006 TTGCAATTAA
*
8437016 AATTTTTATTTTCTTTTCT
1 AATTTTTATTTTATTTTCT
8437035 AATTCTTTA-TTTATTTTCT
1 AATT-TTTATTTTATTTTCT
8437054 TCTGACGGGT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 13 0.76
20 4 0.24
ACGTcount: A:0.18, C:0.11, G:0.00, T:0.71
Consensus pattern (19 bp):
AATTTTTATTTTATTTTCT
Found at i:8438235 original size:16 final size:16
Alignment explanation
Indices: 8438214--8438244 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
8438204 GATATTTTAA
8438214 TATATTATATTAATAT
1 TATATTATATTAATAT
*
8438230 TATATTATGTTAATA
1 TATATTATATTAATA
8438245 AAATAATAAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.42, C:0.00, G:0.03, T:0.55
Consensus pattern (16 bp):
TATATTATATTAATAT
Found at i:8438342 original size:12 final size:12
Alignment explanation
Indices: 8438325--8438355 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
8438315 GAAGCAGGGG
8438325 AGAAAAAGAGAA
1 AGAAAAAGAGAA
*
8438337 AGAAAAAGGGAA
1 AGAAAAAGAGAA
8438349 AGAAAAA
1 AGAAAAA
8438356 TAAAAGAGAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.74, C:0.00, G:0.26, T:0.00
Consensus pattern (12 bp):
AGAAAAAGAGAA
Found at i:8445857 original size:16 final size:16
Alignment explanation
Indices: 8445836--8445866 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
8445826 GATATTTTAA
8445836 TATATTATATTAATAT
1 TATATTATATTAATAT
*
8445852 TATATTATGTTAATA
1 TATATTATATTAATA
8445867 AAATAATAAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.42, C:0.00, G:0.03, T:0.55
Consensus pattern (16 bp):
TATATTATATTAATAT
Found at i:8445976 original size:11 final size:12
Alignment explanation
Indices: 8445946--8445975 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
8445936 GAAGCAGGGG
8445946 AGAAAAAGAGAA
1 AGAAAAAGAGAA
*
8445958 AGAAAAAGGGAA
1 AGAAAAAGAGAA
8445970 AGAAAA
1 AGAAAA
8445976 GTAAAAGAGA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.73, C:0.00, G:0.27, T:0.00
Consensus pattern (12 bp):
AGAAAAAGAGAA
Found at i:8449992 original size:28 final size:28
Alignment explanation
Indices: 8449932--8449997 Score: 89
Period size: 29 Copynumber: 2.3 Consensus size: 28
8449922 TTAAATTTTT
*
8449932 ATTTTTTAAAATATCGATTAAGAAATTTT
1 ATTTTTTAAAATATCGATTAAGAAA-TTG
*
8449961 ATTTTTTAAAATATCGATTAAGTACA-TG
1 ATTTTTTAAAATATCGATTAAG-AAATTG
8449989 ATTTTTTAA
1 ATTTTTTAA
8449998 TTTGCATGTG
Statistics
Matches: 34, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
28 10 0.29
29 22 0.65
30 2 0.06
ACGTcount: A:0.39, C:0.05, G:0.08, T:0.48
Consensus pattern (28 bp):
ATTTTTTAAAATATCGATTAAGAAATTG
Found at i:8452657 original size:122 final size:122
Alignment explanation
Indices: 8452438--8452657 Score: 282
Period size: 122 Copynumber: 1.8 Consensus size: 122
8452428 AACAAGTTTG
* * * *
8452438 GATCCAAGAGTCTTTGAAACTTGTTCTTGGATGGATGATTCCACTTCAAGATCTTCCAAACTTGA
1 GATCCAAGAGTCTTTGAAACTTGATATTGGATGAATGATTCCACTTCAAGACCTTCCAAACTTGA
*
8452503 TATTAAAATATGTACTTTATCTTCTTTGTGTTGATGCATCATATTAAGGAGAGCTTT
66 TATTAAAATATGTACTTTATCTTCTTTATGTTGATGCATCATATTAAGGAGAGCTTT
* * * * * *
8452560 GATCCAAGTGTTTTTGAGACTTGATATTGGATGAATGATTCCACTTTAAGAGCCTTCTAGACTTG
1 GATCCAAGAGTCTTTGAAACTTGATATTGGATGAATGATTCCACTTCAAGA-CCTTCCAAACTTG
* * *
8452625 ATCTTAAAA-ATG-AGTTTAGTCTTTTTTATGTTG
65 ATATTAAAATATGTACTTTA-TCTTCTTTATGTTG
8452658 GTTGAATAAG
Statistics
Matches: 82, Mismatches: 14, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
121 5 0.06
122 59 0.72
123 18 0.22
ACGTcount: A:0.27, C:0.14, G:0.18, T:0.40
Consensus pattern (122 bp):
GATCCAAGAGTCTTTGAAACTTGATATTGGATGAATGATTCCACTTCAAGACCTTCCAAACTTGA
TATTAAAATATGTACTTTATCTTCTTTATGTTGATGCATCATATTAAGGAGAGCTTT
Found at i:8454802 original size:17 final size:19
Alignment explanation
Indices: 8454775--8454811 Score: 60
Period size: 17 Copynumber: 2.1 Consensus size: 19
8454765 TGGTTTACCC
8454775 ATGTGGGCCCACAT-GCCT
1 ATGTGGGCCCACATGGCCT
8454793 ATGT-GGCCCACATGGCCT
1 ATGTGGGCCCACATGGCCT
8454811 A
1 A
8454812 AATTGGCTGA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
17 9 0.50
18 9 0.50
ACGTcount: A:0.19, C:0.32, G:0.27, T:0.22
Consensus pattern (19 bp):
ATGTGGGCCCACATGGCCT
Found at i:8469488 original size:22 final size:21
Alignment explanation
Indices: 8469456--8469497 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 21
8469446 TTTAAAGGGC
8469456 AAAAATGTAAATAA-AAAAATT
1 AAAAATGTAAA-AACAAAAATT
8469477 AAAAATGCTAAAAACAAAAAT
1 AAAAATG-TAAAAACAAAAAT
8469498 ACACTAAAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
21 9 0.47
22 10 0.53
ACGTcount: A:0.71, C:0.05, G:0.05, T:0.19
Consensus pattern (21 bp):
AAAAATGTAAAAACAAAAATT
Found at i:8474334 original size:31 final size:31
Alignment explanation
Indices: 8474262--8474334 Score: 80
Period size: 31 Copynumber: 2.4 Consensus size: 31
8474252 TTAAAACATG
*
8474262 AACTTTGA-TTTGGTACAATTTGATACATTA
1 AACTTTGATTTTGGTACAATATGATACATTA
* *
8474292 AAC-TTGAATTTTGGT-TAATATGTATATATTA
1 AACTTTG-ATTTTGGTACAATATG-ATACATTA
8474323 AACTTTGATTTT
1 AACTTTGATTTT
8474335 AATTAAATTT
Statistics
Matches: 36, Mismatches: 3, Indels: 7
0.78 0.07 0.15
Matches are distributed among these distances:
29 3 0.08
30 9 0.25
31 21 0.58
32 3 0.08
ACGTcount: A:0.33, C:0.07, G:0.12, T:0.48
Consensus pattern (31 bp):
AACTTTGATTTTGGTACAATATGATACATTA
Found at i:8476167 original size:19 final size:20
Alignment explanation
Indices: 8476120--8476159 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 20
8476110 CATCCAAATA
*
8476120 CCAGGAAATATTAGTTTTTTT
1 CCAGAAAATATTAG-TTTTTT
*
8476141 TCAGAAAATATTAGTTTTT
1 CCAGAAAATATTAGTTTTT
8476160 CCATAAAAGT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 5 0.29
21 12 0.71
ACGTcount: A:0.33, C:0.07, G:0.12, T:0.47
Consensus pattern (20 bp):
CCAGAAAATATTAGTTTTTT
Found at i:8478793 original size:19 final size:20
Alignment explanation
Indices: 8478755--8478799 Score: 56
Period size: 20 Copynumber: 2.2 Consensus size: 20
8478745 TAAATACTAT
*
8478755 AAAAATTTATTAACACAATA
1 AAAAATTTATAAACACAATA
*
8478775 AAAAATTTCTAAACA-AATA
1 AAAAATTTATAAACACAATA
8478794 ACAAAA
1 A-AAAA
8478800 AATCGTATGC
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
19 5 0.23
20 17 0.77
ACGTcount: A:0.64, C:0.11, G:0.00, T:0.24
Consensus pattern (20 bp):
AAAAATTTATAAACACAATA
Found at i:8479655 original size:2 final size:2
Alignment explanation
Indices: 8479648--8479687 Score: 64
Period size: 2 Copynumber: 20.5 Consensus size: 2
8479638 ATGAATAAGC
*
8479648 AT AT AT AT AT AT AT AT AT AT AT AT AT AT TT AT A- AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
8479688 GCTTGGACAC
Statistics
Matches: 35, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
1 1 0.03
2 34 0.97
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:8484988 original size:17 final size:17
Alignment explanation
Indices: 8484955--8484989 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
8484945 TCCTCTATGT
* *
8484955 TAGAATAAATATTAAAA
1 TAGAATAAAAATCAAAA
8484972 TAGAATAAAAATCAAAA
1 TAGAATAAAAATCAAAA
8484989 T
1 T
8484990 CAAATAGTTT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.66, C:0.03, G:0.06, T:0.26
Consensus pattern (17 bp):
TAGAATAAAAATCAAAA
Found at i:8489531 original size:28 final size:27
Alignment explanation
Indices: 8489481--8489594 Score: 88
Period size: 28 Copynumber: 3.9 Consensus size: 27
8489471 CTATTCAGAA
*
8489481 ATCAGTGTTAA-CTGGGCCTTAGCCCAT
1 ATCAGTATTAATCTGGGCC-TAGCCCAT
8489508 ATCAGTATTAATCTGGGCCATAGCCC-T
1 ATCAGTATTAATCTGGGCC-TAGCCCAT
* *
8489535 ATTACAATATCAGAGCATACTGGGCCTAGCCCAT
1 A-T-CAGTAT--TA--AT-CTGGGCCTAGCCCAT
*
8489569 ATCAGTATTAGTCTGGGCCGTAGCCC
1 ATCAGTATTAATCTGGGCC-TAGCCC
8489595 TATTACAAGT
Statistics
Matches: 70, Mismatches: 7, Indels: 19
0.73 0.07 0.20
Matches are distributed among these distances:
27 19 0.27
28 21 0.30
29 5 0.07
30 1 0.01
31 1 0.01
32 5 0.07
33 9 0.13
34 9 0.13
ACGTcount: A:0.25, C:0.26, G:0.21, T:0.27
Consensus pattern (27 bp):
ATCAGTATTAATCTGGGCCTAGCCCAT
Found at i:8489677 original size:19 final size:20
Alignment explanation
Indices: 8489623--8489677 Score: 58
Period size: 20 Copynumber: 2.8 Consensus size: 20
8489613 ATTGGGTCTT
* *
8489623 GCCCATATTAACACAGTTAG
1 GCCCATATTAAAACAGCTAG
* *
8489643 GCCCATTTTAATACAGCT-G
1 GCCCATATTAAAACAGCTAG
*
8489662 GCCCATAATAAAACAG
1 GCCCATATTAAAACAG
8489678 TCTCATATGA
Statistics
Matches: 29, Mismatches: 6, Indels: 1
0.81 0.17 0.03
Matches are distributed among these distances:
19 14 0.48
20 15 0.52
ACGTcount: A:0.36, C:0.25, G:0.15, T:0.24
Consensus pattern (20 bp):
GCCCATATTAAAACAGCTAG
Found at i:8490297 original size:16 final size:16
Alignment explanation
Indices: 8490276--8490307 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
8490266 TCACAAATGC
8490276 CAGCTTTTCGGCTTTT
1 CAGCTTTTCGGCTTTT
*
8490292 CAGCTTTTTGGCTTTT
1 CAGCTTTTCGGCTTTT
8490308 GCCGATCTAG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.06, C:0.22, G:0.19, T:0.53
Consensus pattern (16 bp):
CAGCTTTTCGGCTTTT
Found at i:8497242 original size:253 final size:251
Alignment explanation
Indices: 8496796--8497258 Score: 694
Period size: 253 Copynumber: 1.8 Consensus size: 251
8496786 AATCAGATCC
* * * * *
8496796 TCTTGTTTCGAAGAAATACAATATCACATCCAACACGTAGGATACGATATTTCAACCTTCGATAC
1 TCTTGTTTCAAAGAAATAAAATATCACATCCAACACGTAGGACACGATATTTAAACCTTCAATAC
* * * * * * *
8496861 CAAAATCGTCTCATAGTTTCCAAAACTTATGCATTGAAAATTTAAAAGGATATTCAGTCGTTTGG
66 CAAAATCATCTCATAGTTCCCAAAACTCATACATTGAAAATTTAAAAGAATATTCAGTCATTCGG
*
8496926 TCAAACGATAAATCGAAACCCAACACGTAGGGCACAATTTCTCGAAATTTCCAAACGCCAAATAT
131 TCAAACGATAAATCGAAACCCAACAAGTAGGGCACAATTTCTCGAAATTTCCAAACGCCAAATAT
*
8496991 TGCCTTGTTTAAAAATCTCGAATAAAAATGCAATAGTATGAAACAATTAAGATTAA
196 TGCCTTATTTAAAAATCTCGAATAAAAATGCAATAGTATGAAACAATTAAGATTAA
*
8497047 TCTTGTTTCAAAGAAATAAAATATCACATCCAGCACGTAGGACACGATATTTTAAACCTTCAATA
1 TCTTGTTTCAAAGAAATAAAATATCACATCCAACACGTAGGACACGATA-TTTAAACCTTCAATA
* * *
8497112 CCAAAATCATCTCAT-GATTCCCAAAACTCATACATTGAAATTTTGAAAAGAATATTCGGTTATT
65 CCAAAATCATCTCATAG-TTCCCAAAACTCATACATTGAAAATTT-AAAAGAATATTCAGTCATT
* * *
8497176 CGGTCAAACGATAAGTCGAAACCCAGCAAGTAGGGCACGATTTCTCGAAATTTCCAAACGCCAAA
128 CGGTCAAACGATAAATCGAAACCCAACAAGTAGGGCACAATTTCTCGAAATTTCCAAACGCCAAA
*
8497241 TATTGTCTTATTTAAAAA
193 TATTGCCTTATTTAAAAA
8497259 ATTTATTTTG
Statistics
Matches: 187, Mismatches: 22, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
251 46 0.25
252 50 0.27
253 91 0.49
ACGTcount: A:0.39, C:0.20, G:0.13, T:0.28
Consensus pattern (251 bp):
TCTTGTTTCAAAGAAATAAAATATCACATCCAACACGTAGGACACGATATTTAAACCTTCAATAC
CAAAATCATCTCATAGTTCCCAAAACTCATACATTGAAAATTTAAAAGAATATTCAGTCATTCGG
TCAAACGATAAATCGAAACCCAACAAGTAGGGCACAATTTCTCGAAATTTCCAAACGCCAAATAT
TGCCTTATTTAAAAATCTCGAATAAAAATGCAATAGTATGAAACAATTAAGATTAA
Found at i:8500597 original size:38 final size:37
Alignment explanation
Indices: 8500547--8500730 Score: 140
Period size: 38 Copynumber: 4.7 Consensus size: 37
8500537 ATAGTATTAT
*
8500547 ATATTATG-ATTTTATTAAATTCATATAAGAATATTTA
1 ATATTAAGAATTTTATTAAATT-ATATAAGAATATTTA
**** *
8500584 ATATTAAGAATTTTATTAAATTATATATTTTTATTAAATT
1 ATATTAAGAATTTTATTAAATTATATAAGAATATT---TA
* * * *
8500624 ATATTTAATAATAATTATTTTAAATTATATTA-TATAGTATTA
1 ATA-TTAAGAAT--TT-TATTAAATTATATAAGAATA-T-TTA
*
8500666 TATATTATG-ATTTTATTAAATTCATATAAGAATATTTA
1 -ATATTAAGAATTTTATTAAATT-ATATAAGAATATTTA
8500704 ATATTAAGAATTTTATTAAATTATATA
1 ATATTAAGAATTTTATTAAATTATATA
8500731 TTTTTATTAA
Statistics
Matches: 115, Mismatches: 18, Indels: 28
0.71 0.11 0.17
Matches are distributed among these distances:
37 28 0.24
38 37 0.32
39 8 0.07
40 7 0.06
41 9 0.08
42 4 0.03
43 8 0.07
44 13 0.11
45 1 0.01
ACGTcount: A:0.44, C:0.01, G:0.04, T:0.51
Consensus pattern (37 bp):
ATATTAAGAATTTTATTAAATTATATAAGAATATTTA
Found at i:8500615 original size:18 final size:18
Alignment explanation
Indices: 8500594--8500747 Score: 76
Period size: 18 Copynumber: 8.9 Consensus size: 18
8500584 ATATTAAGAA
8500594 TTTTATTAAATTATATAT
1 TTTTATTAAATTATATAT
8500612 TTTTATTAAA-T-TATA-
1 TTTTATTAAATTATATAT
* *
8500627 -TTTAAT-AATAAT-TAT
1 TTTTATTAAATTATATAT
* * *
8500642 TTTAAATTATATTATATAG
1 TTT-TATTAAATTATATAT
* * *
8500661 TATTA-TATATTAT-GA-
1 TTTTATTAAATTATATAT
*
8500676 TTTTATTAAATTCATATAA
1 TTTTATTAAATT-ATATAT
*** * *
8500695 GAATATTTAATATTA-AGAA
1 TTTTA-TTAA-ATTATATAT
8500714 TTTTATTAAATTATATAT
1 TTTTATTAAATTATATAT
8500732 TTTTATTAAATTATAT
1 TTTTATTAAATTATAT
8500748 TTAATAATAA
Statistics
Matches: 100, Mismatches: 22, Indels: 28
0.67 0.15 0.19
Matches are distributed among these distances:
13 2 0.02
14 7 0.07
15 5 0.05
16 12 0.12
17 17 0.17
18 38 0.38
19 11 0.11
20 5 0.05
21 3 0.03
ACGTcount: A:0.42, C:0.01, G:0.03, T:0.55
Consensus pattern (18 bp):
TTTTATTAAATTATATAT
Found at i:8500617 original size:56 final size:55
Alignment explanation
Indices: 8500556--8500747 Score: 208
Period size: 56 Copynumber: 3.3 Consensus size: 55
8500546 TATATTATGA
8500556 TTTTATTAAATTCATATAAGAATATTTAATATTAAGAATTTTATTAAATTATATAT
1 TTTTATTAAATT-ATATAAGAATATTTAATATTAAGAATTTTATTAAATTATATAT
* * * * *
8500612 TTTTATTAAATTATATTTAATAATAATT-ATTTTAA-ATTATATTATATAGTATTATATATTAT
1 TTTTATTAAATTATA--TAAGAATATTTAATATTAAGA--ATTTTAT-TA--AAT-TATA-TAT
8500674 GATTTTATTAAATTCATATAAGAATATTTAATATTAAGAATTTTATTAAATTATATAT
1 --TTTTATTAAATT-ATATAAGAATATTTAATATTAAGAATTTTATTAAATTATATAT
8500732 TTTTATTAAATTATAT
1 TTTTATTAAATTATAT
8500748 TTAATAATAA
Statistics
Matches: 112, Mismatches: 10, Indels: 29
0.74 0.07 0.19
Matches are distributed among these distances:
55 8 0.07
56 30 0.27
57 15 0.13
58 5 0.04
59 4 0.04
60 4 0.04
61 4 0.04
62 5 0.04
63 15 0.13
64 18 0.16
65 4 0.04
ACGTcount: A:0.43, C:0.01, G:0.03, T:0.53
Consensus pattern (55 bp):
TTTTATTAAATTATATAAGAATATTTAATATTAAGAATTTTATTAAATTATATAT
Found at i:8500668 original size:120 final size:120
Alignment explanation
Indices: 8500529--8500831 Score: 570
Period size: 120 Copynumber: 2.5 Consensus size: 120
8500519 ATTATTAATC
8500529 TATATTATATAGTATTATATATTATGATTTTATTAAATTCATATAAGAATATTTAATATTAAGAA
1 TATATTATATAGTATTATATATTATGATTTTATTAAATTCATATAAGAATATTTAATATTAAGAA
*
8500594 TTTTATTAAATTATATATTTTTATTAAATTATATTTAATAATAATTATTTTAAAT
66 TTTTATTAAATTATATATTTTTATTAAATTATATTTAATAATAATTATGTTAAAT
8500649 TATATTATATAGTATTATATATTATGATTTTATTAAATTCATATAAGAATATTTAATATTAAGAA
1 TATATTATATAGTATTATATATTATGATTTTATTAAATTCATATAAGAATATTTAATATTAAGAA
8500714 TTTTATTAAATTATATATTTTTATTAAATTATATTTAATAATAATTATGTTAAAT
66 TTTTATTAAATTATATATTTTTATTAAATTATATTTAATAATAATTATGTTAAAT
* **
8500769 TATATTTTATAGTATTATATATTATGATTTTAGAAAATTCATATAAGAATATTTAATATTAAG
1 TATATTATATAGTATTATATATTATGATTTTATTAAATTCATATAAGAATATTTAATATTAAG
8500832 TTTTTTTCTA
Statistics
Matches: 179, Mismatches: 4, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
120 179 1.00
ACGTcount: A:0.43, C:0.01, G:0.05, T:0.51
Consensus pattern (120 bp):
TATATTATATAGTATTATATATTATGATTTTATTAAATTCATATAAGAATATTTAATATTAAGAA
TTTTATTAAATTATATATTTTTATTAAATTATATTTAATAATAATTATGTTAAAT
Found at i:8501112 original size:15 final size:15
Alignment explanation
Indices: 8501077--8501126 Score: 59
Period size: 15 Copynumber: 3.5 Consensus size: 15
8501067 TTAAGAATTT
*
8501077 TATTAAATTAT-ATA
1 TATTTAATTATAATA
8501091 T-TTTAATTATAATA
1 TATTTAATTATAATA
*
8501105 TATTTAATAATAATA
1 TATTTAATTATAATA
*
8501120 TGTTTAA
1 TATTTAA
8501127 ATATGATTAA
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
13 8 0.26
14 5 0.16
15 18 0.58
ACGTcount: A:0.46, C:0.00, G:0.02, T:0.52
Consensus pattern (15 bp):
TATTTAATTATAATA
Found at i:8501263 original size:16 final size:16
Alignment explanation
Indices: 8501242--8501283 Score: 52
Period size: 15 Copynumber: 2.7 Consensus size: 16
8501232 TTATTAAATT
*
8501242 ATATATTTTAATTATA
1 ATATATTTTAATAATA
8501258 ATATA-TTTAATAATA
1 ATATATTTTAATAATA
8501273 AT-TATGTTTAA
1 ATATAT-TTTAA
8501284 ATATGATTAA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
14 2 0.09
15 11 0.48
16 10 0.43
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.52
Consensus pattern (16 bp):
ATATATTTTAATAATA
Found at i:8501268 original size:15 final size:15
Alignment explanation
Indices: 8501233--8501274 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
8501223 TTAAGAATTT
*
8501233 TATTAAATTAT-ATA
1 TATTTAATTATAATA
8501247 T-TTTAATTATAATA
1 TATTTAATTATAATA
*
8501261 TATTTAATAATAAT
1 TATTTAATTATAAT
8501275 TATGTTTAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
13 8 0.33
14 5 0.21
15 11 0.46
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (15 bp):
TATTTAATTATAATA
Found at i:8501348 original size:157 final size:157
Alignment explanation
Indices: 8501063--8501524 Score: 800
Period size: 157 Copynumber: 3.0 Consensus size: 157
8501053 AAGAATATTG
8501063 ATTATTAAGAATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAA-TATGTTTAA
1 ATTATTAAGAATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTTTAA
8501127 ATATGATTAAATTATTTATTATTGATATTAATAATCTTATTAAAATTTAAATAACAATAACAATA
66 ATATGATTAAATTATTTATTATTGATATTAATAATCTTATTAAAATTTAAATAACAATAACAATA
8501192 ATAATTTACCAAAACAAATTTCTGCTA
131 ATAATTTACCAAAACAAATTTCTGCTA
8501219 ATTATTAAGAATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTTTAA
1 ATTATTAAGAATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTTTAA
8501284 ATATGATTAAATTATTTATTATTGATATTAATAATCTTATTAAAATTTAAATAACAATAACAATA
66 ATATGATTAAATTATTTATTATTGATATTAATAATCTTATTAAAATTTAAATAACAATAACAATA
8501349 ATAATTTACCAAAACAAATTTCTGCTA
131 ATAATTTACCAAAACAAATTTCTGCTA
*
8501376 ATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTTAA
1 ATTATTAAGAATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTTTAA
* *
8501441 ATATGATTAAAATATTTATTATTG---------ATCTTATTAAAATTTTAATAACAATAACAATA
66 ATATGATTAAATTATTTATTATTGATATTAATAATCTTATTAAAATTTAAATAACAATAACAATA
* * *
8501497 ATCATTTACTAAAACAAATTTATGCTA
131 ATAATTTACCAAAACAAATTTCTGCTA
8501524 A
1 A
8501525 GGGTATTCTA
Statistics
Matches: 299, Mismatches: 6, Indels: 10
0.95 0.02 0.03
Matches are distributed among these distances:
148 56 0.19
156 55 0.18
157 188 0.63
ACGTcount: A:0.47, C:0.05, G:0.03, T:0.45
Consensus pattern (157 bp):
ATTATTAAGAATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTTTAA
ATATGATTAAATTATTTATTATTGATATTAATAATCTTATTAAAATTTAAATAACAATAACAATA
ATAATTTACCAAAACAAATTTCTGCTA
Found at i:8501414 original size:18 final size:17
Alignment explanation
Indices: 8501386--8501420 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
8501376 ATTATTAAGA
*
8501386 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
8501403 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
8501421 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:8501671 original size:16 final size:16
Alignment explanation
Indices: 8501647--8501714 Score: 118
Period size: 16 Copynumber: 4.2 Consensus size: 16
8501637 GATTTGCTAT
8501647 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
*
8501663 TACATCTCTAATCCAA
1 TACACCTCTAATCCAA
*
8501679 TACACCTCCAATCCAA
1 TACACCTCTAATCCAA
8501695 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
8501711 TACA
1 TACA
8501715 ACGAACCAAA
Statistics
Matches: 48, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
16 48 1.00
ACGTcount: A:0.38, C:0.37, G:0.00, T:0.25
Consensus pattern (16 bp):
TACACCTCTAATCCAA
Found at i:8502018 original size:11 final size:11
Alignment explanation
Indices: 8502002--8502026 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
8501992 AATGAAAACC
8502002 TATACAATATG
1 TATACAATATG
8502013 TATACAATATG
1 TATACAATATG
8502024 TAT
1 TAT
8502027 GCATATATAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.44, C:0.08, G:0.08, T:0.40
Consensus pattern (11 bp):
TATACAATATG
Found at i:8512893 original size:14 final size:15
Alignment explanation
Indices: 8512876--8512916 Score: 50
Period size: 15 Copynumber: 2.7 Consensus size: 15
8512866 TATTTGGTGT
8512876 ATTATATTTTTTAA-
1 ATTATATTTTTTAAG
8512890 ATTAT-TTAATTTTAAG
1 ATTATATT--TTTTAAG
8512906 ATTATATTTTT
1 ATTATATTTTT
8512917 AATATAAATA
Statistics
Matches: 23, Mismatches: 0, Indels: 7
0.77 0.00 0.23
Matches are distributed among these distances:
13 2 0.09
14 5 0.22
15 9 0.39
16 5 0.22
17 2 0.09
ACGTcount: A:0.34, C:0.00, G:0.02, T:0.63
Consensus pattern (15 bp):
ATTATATTTTTTAAG
Found at i:8513778 original size:17 final size:19
Alignment explanation
Indices: 8513737--8513779 Score: 56
Period size: 17 Copynumber: 2.4 Consensus size: 19
8513727 TATTTTCAAG
8513737 AAAATATAATAATAAATTA
1 AAAATATAATAATAAATTA
8513756 AAAATAT-ATAA-AAA-TA
1 AAAATATAATAATAAATTA
8513772 AAGAATAT
1 AA-AATAT
8513780 CGTTGACAAT
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
16 4 0.17
17 8 0.35
18 4 0.17
19 7 0.30
ACGTcount: A:0.70, C:0.00, G:0.02, T:0.28
Consensus pattern (19 bp):
AAAATATAATAATAAATTA
Found at i:8513865 original size:29 final size:29
Alignment explanation
Indices: 8513833--8513907 Score: 73
Period size: 29 Copynumber: 2.5 Consensus size: 29
8513823 TTTTTAAAAT
* * *
8513833 ATATAATAATTAAT-TTAAATTTTATATTA
1 ATATAATAATTAATATT-AATATTAAATAA
8513862 ATATTAAT-ATTAATATTAATATTAAATAA
1 ATA-TAATAATTAATATTAATATTAAATAA
8513891 ATATAATTACATTAATA
1 ATATAA-TA-ATTAATA
8513908 CTAAACAAAA
Statistics
Matches: 38, Mismatches: 3, Indels: 8
0.78 0.06 0.16
Matches are distributed among these distances:
28 3 0.08
29 22 0.58
30 6 0.16
31 7 0.18
ACGTcount: A:0.52, C:0.01, G:0.00, T:0.47
Consensus pattern (29 bp):
ATATAATAATTAATATTAATATTAAATAA
Found at i:8513896 original size:6 final size:6
Alignment explanation
Indices: 8513830--8513886 Score: 64
Period size: 6 Copynumber: 9.3 Consensus size: 6
8513820 TATTTTTTAA
*
8513830 AATATAT AATAATT AAT-TT AA-ATTT TATATT AATATT AATATT AATATT
1 AATAT-T AAT-ATT AATATT AATA-TT AATATT AATATT AATATT AATATT
8513879 AATATT AA
1 AATATT AA
8513887 ATAAATATAA
Statistics
Matches: 44, Mismatches: 2, Indels: 9
0.80 0.04 0.16
Matches are distributed among these distances:
5 4 0.09
6 30 0.68
7 8 0.18
8 2 0.05
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (6 bp):
AATATT
Found at i:8514422 original size:26 final size:26
Alignment explanation
Indices: 8514385--8514474 Score: 72
Period size: 26 Copynumber: 3.3 Consensus size: 26
8514375 ATATTATTTT
*
8514385 TATTAAATTATGTTTAATAATAATTA
1 TATTAAAATATGTTTAATAATAATTA
* * *
8514411 TATTAAAATATGATTAAAGTATTTATTA
1 TATTAAAATATG-TTTAA-TAATAATTA
* * * **
8514439 TTATTAAATTATATTTAATAACAATCC
1 -TATTAAAATATGTTTAATAATAATTA
8514466 TATTAAAAT
1 TATTAAAAT
8514475 TTAATAACAA
Statistics
Matches: 48, Mismatches: 13, Indels: 6
0.72 0.19 0.09
Matches are distributed among these distances:
26 19 0.40
27 8 0.17
28 11 0.23
29 10 0.21
ACGTcount: A:0.47, C:0.03, G:0.03, T:0.47
Consensus pattern (26 bp):
TATTAAAATATGTTTAATAATAATTA
Found at i:8515028 original size:10 final size:10
Alignment explanation
Indices: 8515012--8515050 Score: 53
Period size: 10 Copynumber: 3.9 Consensus size: 10
8515002 AATTTTAGCT
8515012 TTTATCTTTA
1 TTTATCTTTA
*
8515022 ATTATCTTTA
1 TTTATCTTTA
8515032 TTTAT-TTGTA
1 TTTATCTT-TA
8515042 TTTATCTTT
1 TTTATCTTT
8515051 TAGAATTTAA
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
9 2 0.08
10 21 0.84
11 2 0.08
ACGTcount: A:0.21, C:0.08, G:0.03, T:0.69
Consensus pattern (10 bp):
TTTATCTTTA
Found at i:8519609 original size:21 final size:18
Alignment explanation
Indices: 8519583--8519635 Score: 61
Period size: 18 Copynumber: 2.8 Consensus size: 18
8519573 TTACACCGCA
8519583 TTGTGGATAAACCACTCATCG
1 TTGTGGATAAACCA--C-TCG
*
8519604 TTGTGGACAAACCACTCG
1 TTGTGGATAAACCACTCG
*
8519622 TTATGGATAAACCA
1 TTGTGGATAAACCA
8519636 TTAGTAATAA
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
18 15 0.52
19 1 0.03
21 13 0.45
ACGTcount: A:0.32, C:0.23, G:0.19, T:0.26
Consensus pattern (18 bp):
TTGTGGATAAACCACTCG
Found at i:8519827 original size:22 final size:22
Alignment explanation
Indices: 8519801--8519873 Score: 67
Period size: 24 Copynumber: 3.3 Consensus size: 22
8519791 ATACAGTATG
8519801 GATAAACCACTCAAACGGTGCA
1 GATAAACCACTCAAACGGTGCA
* **
8519823 GATAAAAGCTACTCAAACGGTGTG
1 GAT-AAA-CCACTCAAACGGTGCA
* *
8519847 GAAAAACCACTC-AATGGTGCA
1 GATAAACCACTCAAACGGTGCA
*
8519868 AATAAA
1 GATAAA
8519874 TTGTTCAACT
Statistics
Matches: 39, Mismatches: 10, Indels: 5
0.72 0.19 0.09
Matches are distributed among these distances:
21 10 0.26
22 8 0.21
23 6 0.15
24 15 0.38
ACGTcount: A:0.44, C:0.21, G:0.19, T:0.16
Consensus pattern (22 bp):
GATAAACCACTCAAACGGTGCA
Found at i:8521876 original size:24 final size:24
Alignment explanation
Indices: 8521845--8521901 Score: 73
Period size: 24 Copynumber: 2.4 Consensus size: 24
8521835 TTTGTTTTAA
8521845 ATTA-ATTA-ATACAATAATACCGG
1 ATTATATTATATAC-ATAATACCGG
* *
8521868 ATTATATTATTTTCATAATACCGG
1 ATTATATTATATACATAATACCGG
8521892 ATTATATTAT
1 ATTATATTAT
8521902 TTTCATACTT
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
23 4 0.13
24 24 0.80
25 2 0.07
ACGTcount: A:0.40, C:0.11, G:0.07, T:0.42
Consensus pattern (24 bp):
ATTATATTATATACATAATACCGG
Found at i:8521915 original size:29 final size:24
Alignment explanation
Indices: 8521858--8521908 Score: 102
Period size: 24 Copynumber: 2.1 Consensus size: 24
8521848 AATTAATACA
8521858 ATAATACCGGATTATATTATTTTC
1 ATAATACCGGATTATATTATTTTC
8521882 ATAATACCGGATTATATTATTTTC
1 ATAATACCGGATTATATTATTTTC
8521906 ATA
1 ATA
8521909 CTTTAATTAA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 27 1.00
ACGTcount: A:0.35, C:0.12, G:0.08, T:0.45
Consensus pattern (24 bp):
ATAATACCGGATTATATTATTTTC
Found at i:8528708 original size:12 final size:12
Alignment explanation
Indices: 8528691--8528742 Score: 54
Period size: 12 Copynumber: 4.3 Consensus size: 12
8528681 ATATAGTAAT
8528691 ATAAATCATATA
1 ATAAATCATATA
*
8528703 ATAAATAATATA
1 ATAAATCATATA
*
8528715 A-ATAT-ATATA
1 ATAAATCATATA
8528725 ATAAAATCTATATA
1 AT-AAATC-ATATA
8528739 ATAA
1 ATAA
8528743 TATATATATA
Statistics
Matches: 33, Mismatches: 3, Indels: 7
0.77 0.07 0.16
Matches are distributed among these distances:
10 6 0.18
11 3 0.09
12 15 0.45
13 2 0.06
14 7 0.21
ACGTcount: A:0.62, C:0.04, G:0.00, T:0.35
Consensus pattern (12 bp):
ATAAATCATATA
Found at i:8528726 original size:22 final size:21
Alignment explanation
Indices: 8528687--8528729 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 21
8528677 AAATATATAG
8528687 TAATATAAATCATATAATAAA
1 TAATATAAATCATATAATAAA
*
8528708 TAATATAAATATATATAATAAA
1 TAATATAAAT-CATATAATAAA
8528730 ATCTATATAA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
21 10 0.50
22 10 0.50
ACGTcount: A:0.63, C:0.02, G:0.00, T:0.35
Consensus pattern (21 bp):
TAATATAAATCATATAATAAA
Found at i:8528736 original size:14 final size:14
Alignment explanation
Indices: 8528673--8528872 Score: 86
Period size: 14 Copynumber: 14.4 Consensus size: 14
8528663 ATAATTTACA
8528673 AATAAAATATATAGT
1 AATAAAATATATA-T
*
8528688 AATATAAAT-CATAT
1 AATA-AAATATATAT
8528702 AAT--AA-ATA-AT
1 AATAAAATATATAT
8528712 -AT-AAATATATAT
1 AATAAAATATATAT
*
8528724 AATAAAATCTATAT
1 AATAAAATATATAT
*
8528738 AATAATATATATAT
1 AATAAAATATATAT
* *
8528752 AAGAAAGATACAT-T
1 AATAAA-ATATATAT
*
8528766 -ATAAGGAATAATAGAT
1 AATAA--AAT-ATATAT
8528782 AATAAAATATAGTATGT
1 AATAAAATATA-TA--T
** *
8528799 GGTAAGAATACATA-
1 AATAA-AATATATAT
8528813 AAT-AAA-A-ATAT
1 AATAAAATATATAT
*
8528824 AATGAAATATGATAT
1 AATAAAATAT-ATAT
*
8528839 AATAAAAATATATAA
1 AAT-AAAATATATAT
8528854 AATAATAATA-ATAT
1 AATAA-AATATATAT
8528868 AATAA
1 AATAA
8528873 GTACTTTTTT
Statistics
Matches: 141, Mismatches: 20, Indels: 49
0.67 0.10 0.23
Matches are distributed among these distances:
9 2 0.01
10 7 0.05
11 10 0.07
12 7 0.05
13 7 0.05
14 46 0.33
15 36 0.26
16 11 0.08
17 10 0.07
18 5 0.04
ACGTcount: A:0.60, C:0.02, G:0.07, T:0.32
Consensus pattern (14 bp):
AATAAAATATATAT
Found at i:8528738 original size:36 final size:38
Alignment explanation
Indices: 8528673--8528753 Score: 116
Period size: 36 Copynumber: 2.2 Consensus size: 38
8528663 ATAATTTACA
8528673 AATA-AAATATATAGTAATATAAATCATATAATAA-AT
1 AATATAAATATATAGTAATATAAATCATATAATAATAT
8528709 AATATAAATATATA-TAATA-AAATCTATATAATAATAT
1 AATATAAATATATAGTAATATAAATC-ATATAATAATAT
8528746 ATATATAA
1 A-ATATAA
8528754 GAAAGATACA
Statistics
Matches: 41, Mismatches: 0, Indels: 6
0.87 0.00 0.13
Matches are distributed among these distances:
35 5 0.12
36 18 0.44
37 12 0.29
38 6 0.15
ACGTcount: A:0.60, C:0.02, G:0.01, T:0.36
Consensus pattern (38 bp):
AATATAAATATATAGTAATATAAATCATATAATAATAT
Found at i:8528869 original size:26 final size:27
Alignment explanation
Indices: 8528805--8528869 Score: 66
Period size: 26 Copynumber: 2.5 Consensus size: 27
8528795 ATGTGGTAAG
*
8528805 AATACATAA-ATAAAAATATAATGAAAT
1 AATA-ATAATATAAAAATATAATAAAAT
*
8528832 -ATGAT-ATAATAAAAATAT-ATAAAAT
1 AATAATAAT-ATAAAAATATAATAAAAT
8528857 AATAATAATATAA
1 AATAATAATATAA
8528870 TAAGTACTTT
Statistics
Matches: 31, Mismatches: 3, Indels: 9
0.72 0.07 0.21
Matches are distributed among these distances:
24 1 0.03
25 8 0.26
26 20 0.65
27 2 0.06
ACGTcount: A:0.66, C:0.02, G:0.03, T:0.29
Consensus pattern (27 bp):
AATAATAATATAAAAATATAATAAAAT
Found at i:8530413 original size:44 final size:43
Alignment explanation
Indices: 8530363--8530445 Score: 105
Period size: 43 Copynumber: 1.9 Consensus size: 43
8530353 CATGTTGATA
8530363 TCTTCGATCTGCTCTCTG-CTGAACACAGAGACGCCAAATCTGCT
1 TCTTCGATCTGCTCTCTGAC--AACACAGAGACGCCAAATCTGCT
* * * *
8530407 TCTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATC
1 TCTTCGATCTGCTCTCTGACAACACAGAGACGCCAAATC
8530446 ATCTTAGATT
Statistics
Matches: 34, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
43 17 0.50
44 16 0.47
45 1 0.03
ACGTcount: A:0.25, C:0.28, G:0.17, T:0.30
Consensus pattern (43 bp):
TCTTCGATCTGCTCTCTGACAACACAGAGACGCCAAATCTGCT
Found at i:8530769 original size:206 final size:205
Alignment explanation
Indices: 8530408--8530963 Score: 833
Period size: 206 Copynumber: 2.7 Consensus size: 205
8530398 AAATCTGCTT
* * *
8530408 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAGCGTAAGCAT
1 CTTCGATTTGTTCTCTGACAATACAAAGATGCCAAATCATCTTAGATTTGCTTCAGTGTAAGCAC
* * *
8530473 ACGAAAACCAAATCAGCTATGTCTTCGATTTGCTCCTTGTAAGCACAAGGATACCAAACTATCTT
66 ATGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATACCAAAC-ATCTT
* * ** *
8530538 GGATCTGCTTCAGTCTAATCATCTGAAGGTTAGATCAGCTATGTGTCTGCCCTCCGTCGAATATG
130 GGATCTGCTTCAGTATAAACATCTGAAGGCCAGATCAGCTATGTGTCTGCCCTCCGTCGAATATA
8530603 GAGACGCCAAA
195 GAGACGCCAAA
* *
8530614 CTTCGATTTGTTCTCTGACAATACAAAGATGCCAAATTATCTTAGACTTGCTTCAGTGTAAGCAC
1 CTTCGATTTGTTCTCTGACAATACAAAGATGCCAAATCATCTTAGATTTGCTTCAGTGTAAGCAC
* * * *
8530679 ATGAAAGCTAAATCAGCTATGTCTTCGATTTGTTTCTTGTAAACACAAGGATGCCAAATCATCTT
66 ATGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATACCAAA-CATCTT
* **
8530744 GGATCTGCTTCAGTATAAACATCTGAAGGCCAGATCTGCTATGTGTCTGCTGTCCGTCGAATATA
130 GGATCTGCTTCAGTATAAACATCTGAAGGCCAGATCAGCTATGTGTCTGCCCTCCGTCGAATATA
* *
8530809 GAGATGCTAAA
195 GAGACGCCAAA
* *
8530820 CTTTGATTTGTTCTCTGACAATACAAAGATGCCAAATCATCTTAGATTTGCTTCATTGTAAGCAC
1 CTTCGATTTGTTCTCTGACAATACAAAGATGCCAAATCATCTTAGATTTGCTTCAGTGTAAGCAC
* * *
8530885 GTGAAAGCCAAATCAGCTATGTCTTTGATTTGTTCCTTGTAAGCATAAGGATACCAAACCATCTT
66 ATGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATACCAAA-CATCTT
8530950 GGATCTTGCTTCAG
130 GGATC-TGCTTCAG
8530964 CCAGATCTGC
Statistics
Matches: 314, Mismatches: 34, Indels: 3
0.89 0.10 0.01
Matches are distributed among these distances:
206 305 0.97
207 9 0.03
ACGTcount: A:0.29, C:0.21, G:0.18, T:0.32
Consensus pattern (205 bp):
CTTCGATTTGTTCTCTGACAATACAAAGATGCCAAATCATCTTAGATTTGCTTCAGTGTAAGCAC
ATGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATACCAAACATCTTG
GATCTGCTTCAGTATAAACATCTGAAGGCCAGATCAGCTATGTGTCTGCCCTCCGTCGAATATAG
AGACGCCAAA
Found at i:8530785 original size:87 final size:87
Alignment explanation
Indices: 8530614--8530787 Score: 194
Period size: 87 Copynumber: 2.0 Consensus size: 87
8530604 AGACGCCAAA
* * * *
8530614 CTTCGATTTGTTCTCTGACAATACAAAGATGCCAAATTATCTTAGACTTGCTTCAGTGTAAGCAC
1 CTTCGATTTGTTCTCTGACAACACAAAGATGCCAAATCATCTTAGACTTGCTTCAGTATAAACAC
*
8530679 ATGAAAGCTAAATCAGCTATGT
66 ATGAAAGCCAAATCAGCTATGT
* *
8530701 CTTCGATTTGTT-TCTTGTA-AACACAAGGATGCCAAATCATCTTGGA-TCTGCTTCAGTATAAA
1 CTTCGATTTGTTCTC-TG-ACAACACAAAGATGCCAAATCATCTTAGACT-TGCTTCAGTATAAA
* * *
8530763 CATC-TGAAGGCCAGATCTGCTATGT
63 CA-CATGAAAGCCAAATCAGCTATGT
8530788 GTCTGCTGTC
Statistics
Matches: 73, Mismatches: 10, Indels: 8
0.80 0.11 0.09
Matches are distributed among these distances:
86 3 0.04
87 68 0.93
88 2 0.03
ACGTcount: A:0.30, C:0.20, G:0.17, T:0.33
Consensus pattern (87 bp):
CTTCGATTTGTTCTCTGACAACACAAAGATGCCAAATCATCTTAGACTTGCTTCAGTATAAACAC
ATGAAAGCCAAATCAGCTATGT
Found at i:8543051 original size:21 final size:20
Alignment explanation
Indices: 8543014--8543063 Score: 64
Period size: 21 Copynumber: 2.5 Consensus size: 20
8543004 ATCAGCTCAC
8543014 TTGAGCTCAATTCAGCTCGT
1 TTGAGCTCAATTCAGCTCGT
* *
8543034 TTGAGTTCGAATTTAGCTCGT
1 TTGAGCTC-AATTCAGCTCGT
*
8543055 TTCAGCTCA
1 TTGAGCTCA
8543064 TTCCTACTTC
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
20 8 0.32
21 17 0.68
ACGTcount: A:0.20, C:0.22, G:0.20, T:0.38
Consensus pattern (20 bp):
TTGAGCTCAATTCAGCTCGT
Found at i:8545466 original size:17 final size:18
Alignment explanation
Indices: 8545423--8545477 Score: 67
Period size: 17 Copynumber: 2.9 Consensus size: 18
8545413 TCAATTGAGA
8545423 GAAAAAGAAAAGAATGAATGT
1 GAAAAAGAAAAGAA--AA-GT
8545444 GAAAAAAGAAAAGAAAA-T
1 G-AAAAAGAAAAGAAAAGT
8545462 GAAAAAGAAAAGAAAA
1 GAAAAAGAAAAGAAAA
8545478 ATGAGAAAAA
Statistics
Matches: 33, Mismatches: 0, Indels: 6
0.85 0.00 0.15
Matches are distributed among these distances:
17 15 0.45
18 2 0.06
20 2 0.06
21 1 0.03
22 13 0.39
ACGTcount: A:0.73, C:0.00, G:0.20, T:0.07
Consensus pattern (18 bp):
GAAAAAGAAAAGAAAAGT
Found at i:8545466 original size:18 final size:18
Alignment explanation
Indices: 8545424--8545490 Score: 73
Period size: 22 Copynumber: 3.4 Consensus size: 18
8545414 CAATTGAGAG
8545424 AAAAAGAAAAGAATGAATGTGA
1 AAAAAGAAAAGAA--AA--TGA
8545446 AAAAAGAAAAGAAAATG-
1 AAAAAGAAAAGAAAATGA
8545463 AAAAAGAAAAGAAAAATGA
1 AAAAAGAAAAG-AAAATGA
8545482 GAAAAAGAA
1 -AAAAAGAA
8545491 TGCAAAAATA
Statistics
Matches: 42, Mismatches: 0, Indels: 8
0.84 0.00 0.16
Matches are distributed among these distances:
17 11 0.26
18 8 0.19
20 10 0.24
22 13 0.31
ACGTcount: A:0.73, C:0.00, G:0.19, T:0.07
Consensus pattern (18 bp):
AAAAAGAAAAGAAAATGA
Found at i:8546550 original size:21 final size:21
Alignment explanation
Indices: 8546524--8546566 Score: 86
Period size: 21 Copynumber: 2.0 Consensus size: 21
8546514 AGTTTCTATC
8546524 GGCGTTTTGTGCCCAACTTCA
1 GGCGTTTTGTGCCCAACTTCA
8546545 GGCGTTTTGTGCCCAACTTCA
1 GGCGTTTTGTGCCCAACTTCA
8546566 G
1 G
8546567 CACTTTGGCT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.14, C:0.28, G:0.26, T:0.33
Consensus pattern (21 bp):
GGCGTTTTGTGCCCAACTTCA
Found at i:8550406 original size:12 final size:12
Alignment explanation
Indices: 8550389--8550455 Score: 57
Period size: 12 Copynumber: 5.3 Consensus size: 12
8550379 ATATAGTAAT
8550389 ATAAATCATATA
1 ATAAATCATATA
*
8550401 ATAAATAATATA
1 ATAAATCATATA
*
8550413 A-AAATATATATA
1 ATAAAT-CATATA
8550425 ATAAAATCTATATA
1 AT-AAATC-ATATA
8550439 ATAATAT-ATATA
1 ATAA-ATCATATA
8550451 TATAA
1 -ATAA
8550456 GAAAGATACA
Statistics
Matches: 46, Mismatches: 3, Indels: 11
0.77 0.05 0.18
Matches are distributed among these distances:
11 4 0.09
12 23 0.50
13 6 0.13
14 13 0.28
ACGTcount: A:0.61, C:0.03, G:0.00, T:0.36
Consensus pattern (12 bp):
ATAAATCATATA
Found at i:8550420 original size:8 final size:9
Alignment explanation
Indices: 8550385--8550455 Score: 51
Period size: 8 Copynumber: 7.9 Consensus size: 9
8550375 AAATATATAG
8550385 TAATATAAA
1 TAATATAAA
8550394 TCATATAATAAA
1 T-A-AT-ATAAA
8550406 TAATATAAA
1 TAATATAAA
*
8550415 -AATATATA
1 TAATATAAA
8550423 TAATA-AAA
1 TAATATAAA
*
8550431 T-CTATATAA
1 TAATATA-AA
*
8550440 TAATATATA
1 TAATATAAA
8550449 T-ATATAA
1 TAATATAA
8550456 GAAAGATACA
Statistics
Matches: 49, Mismatches: 6, Indels: 15
0.70 0.09 0.21
Matches are distributed among these distances:
7 2 0.04
8 16 0.33
9 15 0.31
10 7 0.14
11 3 0.06
12 6 0.12
ACGTcount: A:0.61, C:0.03, G:0.00, T:0.37
Consensus pattern (9 bp):
TAATATAAA
Found at i:8550436 original size:14 final size:14
Alignment explanation
Indices: 8550371--8550452 Score: 84
Period size: 14 Copynumber: 6.1 Consensus size: 14
8550361 ATAATTTACA
8550371 AATAAAATATATAGT
1 AATAAAATATATA-T
*
8550386 AATATAAAT-CATAT
1 AATA-AAATATATAT
8550400 AAT-AAATA-ATAT
1 AATAAAATATATAT
8550412 -A-AAAATATATAT
1 AATAAAATATATAT
*
8550424 AATAAAATCTATAT
1 AATAAAATATATAT
*
8550438 AATAATATATATAT
1 AATAAAATATATAT
8550452 A
1 A
8550453 TAAGAAAGAT
Statistics
Matches: 57, Mismatches: 4, Indels: 13
0.77 0.05 0.18
Matches are distributed among these distances:
11 6 0.11
12 12 0.21
13 1 0.02
14 27 0.47
15 7 0.12
16 4 0.07
ACGTcount: A:0.61, C:0.02, G:0.01, T:0.35
Consensus pattern (14 bp):
AATAAAATATATAT
Found at i:8550807 original size:22 final size:23
Alignment explanation
Indices: 8550782--8550827 Score: 67
Period size: 22 Copynumber: 2.0 Consensus size: 23
8550772 TAAGAGGGGG
8550782 ATCGATGGTATTTTGAGGA-AGA
1 ATCGATGGTATTTTGAGGAGAGA
* *
8550804 ATCGATTGTATTTTGGGGAGAGA
1 ATCGATGGTATTTTGAGGAGAGA
8550827 A
1 A
8550828 GAGATTGTAT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
22 17 0.81
23 4 0.19
ACGTcount: A:0.30, C:0.04, G:0.33, T:0.33
Consensus pattern (23 bp):
ATCGATGGTATTTTGAGGAGAGA
Found at i:8550833 original size:23 final size:22
Alignment explanation
Indices: 8550789--8550838 Score: 64
Period size: 23 Copynumber: 2.2 Consensus size: 22
8550779 GGGATCGATG
**
8550789 GTATTTTGAGGAAGAATCGATT
1 GTATTTTGAGGAAGAAGAGATT
*
8550811 GTATTTTGGGGAGAGAAGAGATT
1 GTATTTTGAGGA-AGAAGAGATT
8550834 GTATT
1 GTATT
8550839 AGAGGGGGTT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
22 11 0.46
23 13 0.54
ACGTcount: A:0.30, C:0.02, G:0.32, T:0.36
Consensus pattern (22 bp):
GTATTTTGAGGAAGAAGAGATT
Found at i:8551514 original size:39 final size:39
Alignment explanation
Indices: 8551441--8551557 Score: 189
Period size: 39 Copynumber: 3.0 Consensus size: 39
8551431 AAAATAAAGT
8551441 ATGGTTTTAATTAATAATAAAAACAAAATAGTATGGGGGA
1 ATGGTTTTAATTAATAAT-AAAACAAAATAGTATGGGGGA
8551481 ATGGTTTTAATTAATAATAAAACAAAATAGTATGGGGGA
1 ATGGTTTTAATTAATAATAAAACAAAATAGTATGGGGGA
* * * *
8551520 GTAGTTTTAATTAATAATAAAACAAAGTAGCATGGGGG
1 ATGGTTTTAATTAATAATAAAACAAAATAGTATGGGGG
8551558 GAGTGGAATC
Statistics
Matches: 73, Mismatches: 4, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
39 55 0.75
40 18 0.25
ACGTcount: A:0.45, C:0.03, G:0.21, T:0.30
Consensus pattern (39 bp):
ATGGTTTTAATTAATAATAAAACAAAATAGTATGGGGGA
Found at i:8555970 original size:15 final size:15
Alignment explanation
Indices: 8555950--8555980 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
8555940 TTTACTTTCC
8555950 AGAGAGGTAGAAAAG
1 AGAGAGGTAGAAAAG
8555965 AGAGAGGTAGAAAAG
1 AGAGAGGTAGAAAAG
8555980 A
1 A
8555981 AAATCTGGAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.55, C:0.00, G:0.39, T:0.06
Consensus pattern (15 bp):
AGAGAGGTAGAAAAG
Found at i:8564293 original size:205 final size:203
Alignment explanation
Indices: 8563914--8564697 Score: 1272
Period size: 205 Copynumber: 3.8 Consensus size: 203
8563904 TAGGCCGCAG
* *
8563914 CATAACAGATCTGGCCTTCAGATGTTATACTGAAGCAGATCCAAGATGGTTTGGCATCCTTGTGT
1 CATAGCAGATCTCGCCTTCAGATGTT-TACTGAAGCAGATCCAAGATGGTTTGGCATCCTTGTGT
8563979 TTACAA-GAGCAAATCGAAGACATAGCTGATTTGGCTTTCACGTGATTACGATGAAGCAAATCTA
65 TTACAAGGAGCAAATCGAAGACATAGCTGATTTGGCTTTCACGTGATTACGATGAAGCAAATCTA
8564043 AGATGATTTGTCGTCTCTGTATTGTCAGAGAACGAATCGAAGTTTGGCATCTTCACTTTGATGGA
130 AGATGATTTGTCGTCTCTGTATTGTCAGAGAACGAATCGAAGTTTGGCATCTTCACTTTGATGGA
8564108 GAGCAGACA
195 GAGCAGACA
*
8564117 CATAGCAGATCTCGCCTTCAGATGATTTCACTGAAGCAGATCCAAGATGGTTTTGCATCCTTGTG
1 CATAGCAGATCTCGCCTTCAGATG-TTT-ACTGAAGCAGATCCAAGATGGTTTGGCATCCTTGTG
*
8564182 TTTACAATGAGCAAATCGAAGACATAGCTGATTTGGCTTTCACGTGATTACGATGAAGCAAATCT
64 TTTACAAGGAGCAAATCGAAGACATAGCTGATTTGGCTTTCACGTGATTACGATGAAGCAAATCT
8564247 AAGATGATTTGTCGTCTCTGTATTGTCAGAGAACGAATCGAAGTTTGGCATCTTCACTTTGATGG
129 AAGATGATTTGTCGTCTCTGTATTGTCAGAGAACGAATCGAAGTTTGGCATCTTCACTTTGATGG
8564312 AGAGCAGACA
194 AGAGCAGACA
8564322 CATAGCAGATCTCGCCTTCAGATGATTTCACTGAAGCAGATCCAAGATGGTTTGGCATCCTTGTG
1 CATAGCAGATCTCGCCTTCAGATG-TTT-ACTGAAGCAGATCCAAGATGGTTTGGCATCCTTGTG
*
8564387 TTTACAAGGAACAAATCGAAGACATAGCTGATTTGGCTTTCACGTGATTACGA-GAAAGCAAATC
64 TTTACAAGGAGCAAATCGAAGACATAGCTGATTTGGCTTTCACGTGATTACGATG-AAGCAAATC
*
8564451 TAAGATGATTTGTCGTCTCTGTATCGTCAGAGAACGAATCGAAGTTTGGCATCTTCACTTTGAT-
128 TAAGATGATTTGTCGTCTCTGTATTGTCAGAGAACGAATCGAAGTTTGGCATCTTCACTTTGATG
8564515 GAGAGCAGACA
193 GAGAGCAGACA
* * * *
8564526 CATAGTAGATCTCACCTTC-GAATGTTTATGCTGAAGCGGATCCAAGATGGTTTGGCATCCTTAT
1 CATAGCAGATCTCGCCTTCAG-ATGTTTA--CTGAAGCAGATCCAAGATGGTTTGGCATCCTTGT
* * * * * *
8564590 GCTTACAAGGAGCAAATCGAA-TCATAGTTGATTTGGCTTTCACGTGCTTACGTTAAAGCAAATC
63 GTTTACAAGGAGCAAATCGAAGACATAGCTGATTTGGCTTTCACGTGATTACGATGAAGCAAATC
* * * *
8564654 TAAGATGATTTGGCATCTCTGTATTGTCAGGGAACAAATCGAAG
128 TAAGATGATTTGTCGTCTCTGTATTGTCAGAGAACGAATCGAAG
8564698 AAATAGATTT
Statistics
Matches: 550, Mismatches: 23, Indels: 16
0.93 0.04 0.03
Matches are distributed among these distances:
202 1 0.00
203 103 0.19
204 127 0.23
205 319 0.58
ACGTcount: A:0.29, C:0.18, G:0.23, T:0.30
Consensus pattern (203 bp):
CATAGCAGATCTCGCCTTCAGATGTTTACTGAAGCAGATCCAAGATGGTTTGGCATCCTTGTGTT
TACAAGGAGCAAATCGAAGACATAGCTGATTTGGCTTTCACGTGATTACGATGAAGCAAATCTAA
GATGATTTGTCGTCTCTGTATTGTCAGAGAACGAATCGAAGTTTGGCATCTTCACTTTGATGGAG
AGCAGACA
Found at i:8564945 original size:44 final size:45
Alignment explanation
Indices: 8564795--8565267 Score: 422
Period size: 44 Copynumber: 10.8 Consensus size: 45
8564785 GATTTCAGCA
*
8564795 TGGCATCCCTGTGCTTATAGGGAAC-AGATCGAAGATAGCAGATC
1 TGGCATCCCTGTGCTTATAGGGAACAAGATCGAAGATAGCAGATT
* * * * ** *
8564839 TGACATTCCTGTGCTTAGAGTGAAGC-AGATCGAAGATTTC-G-TA
1 TGGCATCCCTGTGCTTATAGGGAA-CAAGATCGAAGATAGCAGATT
* * *
8564882 TGGCATCCCTGTGCTTATAGGGAACAAG-TTGAAAACAGCAGATT
1 TGGCATCCCTGTGCTTATAGGGAACAAGATCGAAGATAGCAGATT
*
8564926 TGGCATCCCTGTGCTTATAGGGAAC-AGATCGAAGATAGCAGATC
1 TGGCATCCCTGTGCTTATAGGGAACAAGATCGAAGATAGCAGATT
** * * ** **
8564970 TGAAATTCCTGTGCTTACAGTAAAGC-AGATCGAAGATTTCAGCA--
1 TGGCATCCCTGTGCTTATAGGGAA-CAAGATCGAAGATAGCAG-ATT
* * * *
8565014 TGGCATCCCTGTGCTTATAGGGAACAAG-TTGAAAAACAGTAGATT
1 TGGCATCCCTGTGCTTATAGGGAACAAGATCG-AAGATAGCAGATT
*
8565059 TGGCATCCCTGTGCTTATAGGGAAC-AGATCGAAGATAGCAGATC
1 TGGCATCCCTGTGCTTATAGGGAACAAGATCGAAGATAGCAGATT
* * * * **
8565103 TGACATTCCTGTGCTTACAGTGAAGC-AGATCGAAGATTTCAGCA--
1 TGGCATCCCTGTGCTTATAGGGAA-CAAGATCGAAGATAGCAG-ATT
* * *
8565147 TGGCATCCCTGTGTTTATAGGGAACAAG-TTGAAGATAGCATATT
1 TGGCATCCCTGTGCTTATAGGGAACAAGATCGAAGATAGCAGATT
* * *
8565191 TGGCATCCCTGTGTTTATAGGGAACAAG-TTGAAGACAGCAGATT
1 TGGCATCCCTGTGCTTATAGGGAACAAGATCGAAGATAGCAGATT
**
8565235 TGGCATCCCTGTATTTATAGGGAAC-AGATCGAA
1 TGGCATCCCTGTGCTTATAGGGAACAAGATCGAA
8565268 AAACTCAAAA
Statistics
Matches: 346, Mismatches: 65, Indels: 36
0.77 0.15 0.08
Matches are distributed among these distances:
42 8 0.02
43 42 0.12
44 224 0.65
45 70 0.20
46 2 0.01
ACGTcount: A:0.30, C:0.18, G:0.25, T:0.26
Consensus pattern (45 bp):
TGGCATCCCTGTGCTTATAGGGAACAAGATCGAAGATAGCAGATT
Found at i:8565103 original size:133 final size:132
Alignment explanation
Indices: 8564795--8565233 Score: 738
Period size: 133 Copynumber: 3.3 Consensus size: 132
8564785 GATTTCAGCA
*
8564795 TGGCATCCCTGTGCTTATAGGGAACAGATCGAAGATAGCAGATCTGACATTCCTGTGCTTAGAGT
1 TGGCATCCCTGTGCTTATAGGGAACAGATCGAAGATAGCAGATCTGACATTCCTGTGCTTACAGT
*
8564860 GAAGCAGATCGAAGATTTC-GTATGGCATCCCTGTGCTTATAGGGAACAAGTTGAAAACAGCAGA
66 GAAGCAGATCGAAGATTTCAGCATGGCATCCCTGTGCTTATAGGGAACAAGTTGAAAACAGCAGA
8564924 TT
131 TT
*
8564926 TGGCATCCCTGTGCTTATAGGGAACAGATCGAAGATAGCAGATCTGAAATTCCTGTGCTTACAGT
1 TGGCATCCCTGTGCTTATAGGGAACAGATCGAAGATAGCAGATCTGACATTCCTGTGCTTACAGT
* *
8564991 AAAGCAGATCGAAGATTTCAGCATGGCATCCCTGTGCTTATAGGGAACAAGTTGAAAAACAGTAG
66 GAAGCAGATCGAAGATTTCAGCATGGCATCCCTGTGCTTATAGGGAACAAGTTG-AAAACAGCAG
8565056 ATT
130 ATT
8565059 TGGCATCCCTGTGCTTATAGGGAACAGATCGAAGATAGCAGATCTGACATTCCTGTGCTTACAGT
1 TGGCATCCCTGTGCTTATAGGGAACAGATCGAAGATAGCAGATCTGACATTCCTGTGCTTACAGT
* * * *
8565124 GAAGCAGATCGAAGATTTCAGCATGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGATAGCATA
66 GAAGCAGATCGAAGATTTCAGCATGGCATCCCTGTGCTTATAGGGAACAAGTTGAAAACAGCAGA
8565189 TT
131 TT
* * *
8565191 TGGCATCCCTGTGTTTATAGGGAACA-AGTTGAAGACAGCAGAT
1 TGGCATCCCTGTGCTTATAGGGAACAGA-TCGAAGATAGCAGAT
8565234 TTGGCATCCC
Statistics
Matches: 290, Mismatches: 15, Indels: 5
0.94 0.05 0.02
Matches are distributed among these distances:
131 82 0.28
132 80 0.28
133 128 0.44
ACGTcount: A:0.31, C:0.18, G:0.25, T:0.26
Consensus pattern (132 bp):
TGGCATCCCTGTGCTTATAGGGAACAGATCGAAGATAGCAGATCTGACATTCCTGTGCTTACAGT
GAAGCAGATCGAAGATTTCAGCATGGCATCCCTGTGCTTATAGGGAACAAGTTGAAAACAGCAGA
TT
Found at i:8566406 original size:40 final size:39
Alignment explanation
Indices: 8566362--8566518 Score: 217
Period size: 40 Copynumber: 4.0 Consensus size: 39
8566352 AAAATAAAGT
*
8566362 ATGGTTTTAATTAATATTAAAAACAAAATAGTATGGGGGA
1 ATGGTTTTAATTAATAAT-AAAACAAAATAGTATGGGGGA
*
8566402 ATGGTTTTAATTAATAATAAAAACAAAATAGTATGGTGGA
1 ATGGTTTTAATTAATAAT-AAAACAAAATAGTATGGGGGA
*
8566442 ATAGTTTTAATTAATAATAAAACAAAATAGTAT-GGGGA
1 ATGGTTTTAATTAATAATAAAACAAAATAGTATGGGGGA
* * * *
8566480 GTAGTTTTTAATTAATAATAAAACAAAGTAGCATGGGGG
1 AT-GGTTTTAATTAATAATAAAACAAAATAGTATGGGGG
8566519 GAGTGGAATC
Statistics
Matches: 106, Mismatches: 9, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
38 5 0.05
39 42 0.40
40 59 0.56
ACGTcount: A:0.46, C:0.03, G:0.19, T:0.32
Consensus pattern (39 bp):
ATGGTTTTAATTAATAATAAAACAAAATAGTATGGGGGA
Found at i:8566475 original size:39 final size:39
Alignment explanation
Indices: 8566365--8566517 Score: 220
Period size: 39 Copynumber: 3.9 Consensus size: 39
8566355 ATAAAGTATG
* *
8566365 GTTTTAATTAATATTAAAAACAAAATAGTATGGGGGAATG
1 GTTTTAATTAATAATAAAAACAAAATAGTAT-GGGGAATA
8566405 GTTTTAATTAATAATAAAAACAAAATAGTATGGTGGAATA
1 GTTTTAATTAATAATAAAAACAAAATAGTATGG-GGAATA
*
8566445 GTTTTAATTAATAAT-AAAACAAAATAGTATGGGGAGTA
1 GTTTTAATTAATAATAAAAACAAAATAGTATGGGGAATA
* *
8566483 GTTTTTAATTAATAAT-AAAACAAAGTAGCATGGGG
1 G-TTTTAATTAATAATAAAAACAAAATAGTATGGGG
8566518 GGAGTGGAAT
Statistics
Matches: 106, Mismatches: 5, Indels: 5
0.91 0.04 0.04
Matches are distributed among these distances:
38 6 0.06
39 50 0.47
40 50 0.47
ACGTcount: A:0.46, C:0.03, G:0.18, T:0.32
Consensus pattern (39 bp):
GTTTTAATTAATAATAAAAACAAAATAGTATGGGGAATA
Found at i:8566489 original size:79 final size:79
Alignment explanation
Indices: 8566365--8566515 Score: 225
Period size: 79 Copynumber: 1.9 Consensus size: 79
8566355 ATAAAGTATG
*
8566365 GTTTTAATTAATATTAAAAACAAAATAGTATGGGGGAATGGTTTTAATTAATAATAAAAACAAAA
1 GTTTTAATTAATAATAAAAACAAAATAGTATGGGGGAATGGTTTTAATTAATAAT-AAAACAAAA
*
8566430 TAGTATGGTGGAATA
65 TAGCATGGTGGAATA
* * *
8566445 GTTTTAATTAATAAT-AAAACAAAATAGTAT-GGGGAGTAGTTTTTAATTAATAATAAAACAAAG
1 GTTTTAATTAATAATAAAAACAAAATAGTATGGGGGAAT-GGTTTTAATTAATAATAAAACAAAA
8566508 TAGCATGG
65 TAGCATGG
8566516 GGGGAGTGGA
Statistics
Matches: 65, Mismatches: 5, Indels: 4
0.88 0.07 0.05
Matches are distributed among these distances:
78 21 0.32
79 30 0.46
80 14 0.22
ACGTcount: A:0.47, C:0.03, G:0.17, T:0.32
Consensus pattern (79 bp):
GTTTTAATTAATAATAAAAACAAAATAGTATGGGGGAATGGTTTTAATTAATAATAAAACAAAAT
AGCATGGTGGAATA
Found at i:8571692 original size:46 final size:46
Alignment explanation
Indices: 8571636--8571808 Score: 210
Period size: 46 Copynumber: 3.7 Consensus size: 46
8571626 TGGTTGAGCA
8571636 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * *
8571682 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--AATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
8571727 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
8571775 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
8571809 GGGGCGGGTT
Statistics
Matches: 107, Mismatches: 11, Indels: 18
0.79 0.08 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
45 3 0.03
46 61 0.57
47 29 0.27
48 3 0.03
50 3 0.03
51 2 0.02
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:8571792 original size:93 final size:93
Alignment explanation
Indices: 8571633--8571803 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 93
8571623 GGATGGTTGA
* *
8571633 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
8571698 TGAGTCCGAGTTCGTGAAATGTAACTAG
66 TGAGTCCGAGTTCGTGAAATGTAACTAG
*
8571726 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
8571791 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
8571804 ACTTAGGGGC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.22, C:0.22, G:0.29, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAAATGTAACTAG
Found at i:8577052 original size:16 final size:16
Alignment explanation
Indices: 8577031--8577065 Score: 54
Period size: 15 Copynumber: 2.2 Consensus size: 16
8577021 TTTTATTTTC
8577031 ATAATAAATTTTAAA-A
1 ATAAT-AATTTTAAATA
8577047 ATAATAATTTTAAATA
1 ATAATAATTTTAAATA
8577063 ATA
1 ATA
8577066 TTCTTCACAT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
15 9 0.50
16 9 0.50
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (16 bp):
ATAATAATTTTAAATA
Found at i:8577118 original size:15 final size:15
Alignment explanation
Indices: 8577098--8577154 Score: 51
Period size: 15 Copynumber: 3.5 Consensus size: 15
8577088 ATTCAATATT
8577098 AATATTTTAATAATA
1 AATATTTTAATAATA
*
8577113 AATATTTATTACAATTATA
1 AATA-TT-TT--AATAATA
*
8577132 AATATATTAATAATA
1 AATATTTTAATAATA
*
8577147 AATGTTTT
1 AATATTTT
8577155 GTAGTATAAA
Statistics
Matches: 33, Mismatches: 5, Indels: 8
0.72 0.11 0.17
Matches are distributed among these distances:
15 16 0.48
16 2 0.06
17 4 0.12
18 1 0.03
19 10 0.30
ACGTcount: A:0.49, C:0.02, G:0.02, T:0.47
Consensus pattern (15 bp):
AATATTTTAATAATA
Found at i:8583931 original size:28 final size:30
Alignment explanation
Indices: 8583867--8583931 Score: 73
Period size: 28 Copynumber: 2.2 Consensus size: 30
8583857 ATTTTCTAAC
*
8583867 ATAAATTCAATACTTATAAATTTTAACAGT
1 ATAAATTCAATACTTATAAATTTTAACACT
* *
8583897 AAAAATTCAATA-TT-TAATTTTTCAACACT
1 ATAAATTCAATACTTATAAATTTT-AACACT
8583926 -TAAATT
1 ATAAATT
8583932 TATACTTTAA
Statistics
Matches: 30, Mismatches: 4, Indels: 4
0.79 0.11 0.11
Matches are distributed among these distances:
28 12 0.40
29 7 0.23
30 11 0.37
ACGTcount: A:0.46, C:0.11, G:0.02, T:0.42
Consensus pattern (30 bp):
ATAAATTCAATACTTATAAATTTTAACACT
Found at i:8585016 original size:18 final size:21
Alignment explanation
Indices: 8584972--8585017 Score: 53
Period size: 21 Copynumber: 2.3 Consensus size: 21
8584962 TATTTTATAA
8584972 TAATTAATAATATATATAAAC
1 TAATTAATAATATATATAAAC
* *
8584993 TCATTAATAA-ATA-AT-GAC
1 TAATTAATAATATATATAAAC
8585011 TAATTAA
1 TAATTAA
8585018 AATTTAATTT
Statistics
Matches: 22, Mismatches: 3, Indels: 3
0.79 0.11 0.11
Matches are distributed among these distances:
18 8 0.36
19 2 0.09
20 3 0.14
21 9 0.41
ACGTcount: A:0.54, C:0.07, G:0.02, T:0.37
Consensus pattern (21 bp):
TAATTAATAATATATATAAAC
Found at i:8589439 original size:35 final size:36
Alignment explanation
Indices: 8589376--8589446 Score: 90
Period size: 35 Copynumber: 2.0 Consensus size: 36
8589366 ATTTGAATAA
*
8589376 ATAATCCAATTTTACTATAAAAACTTAAATT-AAAC
1 ATAATCCAATTTTACAATAAAAACTTAAATTCAAAC
* ** *
8589411 ATAATCCATTTTTACAATGGAAAGTTAAATTCAAAC
1 ATAATCCAATTTTACAATAAAAACTTAAATTCAAAC
8589447 TTATATAAGC
Statistics
Matches: 30, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
35 26 0.87
36 4 0.13
ACGTcount: A:0.48, C:0.14, G:0.04, T:0.34
Consensus pattern (36 bp):
ATAATCCAATTTTACAATAAAAACTTAAATTCAAAC
Found at i:8590301 original size:15 final size:17
Alignment explanation
Indices: 8590268--8590309 Score: 61
Period size: 16 Copynumber: 2.6 Consensus size: 17
8590258 GCAATTAGGG
8590268 TTAGGGTTTTGAGAATT
1 TTAGGGTTTTGAGAATT
*
8590285 TT-GGGTTTTTA-AATT
1 TTAGGGTTTTGAGAATT
8590300 TTAGGGTTTT
1 TTAGGGTTTT
8590310 AAGGAAAAAA
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
15 6 0.26
16 15 0.65
17 2 0.09
ACGTcount: A:0.19, C:0.00, G:0.26, T:0.55
Consensus pattern (17 bp):
TTAGGGTTTTGAGAATT
Found at i:8590310 original size:15 final size:15
Alignment explanation
Indices: 8590268--8590311 Score: 54
Period size: 15 Copynumber: 2.8 Consensus size: 15
8590258 GCAATTAGGG
8590268 TTAGGGTTTTGAGAATT
1 TTAGGGTTTT-A-AATT
8590285 TT-GGGTTTTTAAATT
1 TTAGGG-TTTTAAATT
8590300 TTAGGGTTTTAA
1 TTAGGGTTTTAA
8590312 GGAAAAAAAT
Statistics
Matches: 25, Mismatches: 0, Indels: 6
0.81 0.00 0.19
Matches are distributed among these distances:
15 12 0.48
16 7 0.28
17 6 0.24
ACGTcount: A:0.23, C:0.00, G:0.25, T:0.52
Consensus pattern (15 bp):
TTAGGGTTTTAAATT
Found at i:8590426 original size:96 final size:99
Alignment explanation
Indices: 8590298--8590541 Score: 273
Period size: 96 Copynumber: 2.5 Consensus size: 99
8590288 GGTTTTTAAA
* * * ** *
8590298 TTTTAGG-GTTTTAAGGAAAAAAATTAAATAAATTAAGGTTTAGTGTTTGTTAATTAAATTAATT
1 TTTTAGGATTTTTAAGG-AAAAAATCAAATAAATTAAGGTTTAGGGTTACTTAAGTAAATTAATT
* *
8590362 ACT-AA-TTTTAAAAAATTAGATTATG-GTTTAGTG
65 A-TAAATTTTTAAAAAATTAGATTAAGAGTTTAGGG
* * *
8590395 -TTTATGATTTTTAAGGAAAAAATCAAATAAATTAGGGTTTAGGGTTACTTGAGTAAATTAATTA
1 TTTTAGGATTTTTAAGGAAAAAATCAAATAAATTAAGGTTTAGGGTTACTTAAGTAAATTAATTA
*
8590459 TAAATTTTTTAAAAAATTAGATTAAGATTTTAGGG
66 TAAA-TTTTTAAAAAATTAGATTAAGAGTTTAGGG
* * * *
8590494 TTTTAGGGTATTTAAGAAAAAAAATCAAATAAATTAAGGTTTGGGGTT
1 TTTTAGGATTTTTAAG-GAAAAAATCAAATAAATTAAGGTTTAGGGTT
8590542 TACGATAACT
Statistics
Matches: 122, Mismatches: 18, Indels: 10
0.81 0.12 0.07
Matches are distributed among these distances:
95 1 0.01
96 48 0.39
97 8 0.07
98 19 0.16
99 6 0.05
100 12 0.10
101 28 0.23
ACGTcount: A:0.41, C:0.02, G:0.17, T:0.41
Consensus pattern (99 bp):
TTTTAGGATTTTTAAGGAAAAAATCAAATAAATTAAGGTTTAGGGTTACTTAAGTAAATTAATTA
TAAATTTTTAAAAAATTAGATTAAGAGTTTAGGG
Found at i:8591774 original size:116 final size:116
Alignment explanation
Indices: 8591519--8592017 Score: 867
Period size: 116 Copynumber: 4.3 Consensus size: 116
8591509 TTTATATTTT
* * * *
8591519 ATTACATGAAATAATATAAAAATATTTAAAATATTACTTTATTTAAAATAATTT-TCATTTTATT
1 ATTACATGAAATAATATAAAAATATTCAAAATGTTGCCTTATTTAAAATAATTTCT-ATTTTATT
* * *
8591583 AAAAATATAAAAGT-AATTATAATTACTTTATTTAAAACAACCTTTTATATT
65 AAAAATATAAAAGTAAATTACAATTACTTTATTTAAAACAACCTTTTATCTA
*
8591634 ATCACATGAAATAATATAAAAATATTCAAAATGTTGCCTTATTTAAAATAATTTCTATTTTATTA
1 ATTACATGAAATAATATAAAAATATTCAAAATGTTGCCTTATTTAAAATAATTTCTATTTTATTA
8591699 AAAATATAAAAGTAAATTACAATTACTTTATTTAAAACAACCTTTTATCTA
66 AAAATATAAAAGTAAATTACAATTACTTTATTTAAAACAACCTTTTATCTA
8591750 ATTACATGAAATAATATAAAAATATTCAAAATGTTGCCTTATTTAAAATAATTTCTATTTTATTA
1 ATTACATGAAATAATATAAAAATATTCAAAATGTTGCCTTATTTAAAATAATTTCTATTTTATTA
*
8591815 AAAATATAAAAGTAAATTATAATTACTTTATTTAAAACAACCTTTTATCTA
66 AAAATATAAAAGTAAATTACAATTACTTTATTTAAAACAACCTTTTATCTA
8591866 ATTACATGAAATAATATAAAAATATTCAAAATGTTGCCTTATTTAAAATAATTTCTATTTTATTA
1 ATTACATGAAATAATATAAAAATATTCAAAATGTTGCCTTATTTAAAATAATTTCTATTTTATT-
8591931 AAAAATATAAAAGTAAATTACAATTACTTTATTTAAAACAACCTTTTATCTA
65 AAAAATATAAAAGTAAATTACAATTACTTTATTTAAAACAACCTTTTATCTA
* *
8591983 ATTATATGAAATAATATAAAAAGATTCAAAATGTT
1 ATTACATGAAATAATATAAAAATATTCAAAATGTT
8592018 TGTACAAATA
Statistics
Matches: 368, Mismatches: 13, Indels: 4
0.96 0.03 0.01
Matches are distributed among these distances:
115 71 0.19
116 213 0.58
117 84 0.23
ACGTcount: A:0.47, C:0.08, G:0.03, T:0.41
Consensus pattern (116 bp):
ATTACATGAAATAATATAAAAATATTCAAAATGTTGCCTTATTTAAAATAATTTCTATTTTATTA
AAAATATAAAAGTAAATTACAATTACTTTATTTAAAACAACCTTTTATCTA
Found at i:8592515 original size:30 final size:30
Alignment explanation
Indices: 8592480--8592545 Score: 78
Period size: 30 Copynumber: 2.2 Consensus size: 30
8592470 GTTGAACTGT
*
8592480 TGGGCCCGGTGACTGTGTAGGTCCTGTTGC
1 TGGGCCCGGTGACTGTGTAGGTCCTGTTGA
* * * **
8592510 TGGGCCGGGTGATTGTGTGGGTGTTGTTGA
1 TGGGCCCGGTGACTGTGTAGGTCCTGTTGA
8592540 TGGGCC
1 TGGGCC
8592546 TGCGTCGTCG
Statistics
Matches: 30, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.06, C:0.17, G:0.45, T:0.32
Consensus pattern (30 bp):
TGGGCCCGGTGACTGTGTAGGTCCTGTTGA
Done.