Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A06
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 115140250
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2234201 characters in sequence are not A, C, G, or T
File 290 of 345
Found at i:98660702 original size:20 final size:20
Alignment explanation
Indices: 98660668--98660709 Score: 57
Period size: 20 Copynumber: 2.1 Consensus size: 20
98660658 AACTATTTAA
** *
98660668 ATAATATTATTTGAATAGTT
1 ATAATATTAAATGAATAATT
98660688 ATAATATTAAATGAATAATT
1 ATAATATTAAATGAATAATT
98660708 AT
1 AT
98660710 TTTTTTATTT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.48, C:0.00, G:0.07, T:0.45
Consensus pattern (20 bp):
ATAATATTAAATGAATAATT
Found at i:98675390 original size:28 final size:28
Alignment explanation
Indices: 98675358--98675422 Score: 112
Period size: 28 Copynumber: 2.3 Consensus size: 28
98675348 ATTTACTAGA
*
98675358 ATACCCCTATGTATGCAAAATTACCATT
1 ATACCCCTATGTATGCAAAATGACCATT
*
98675386 ATACCCCTATGTATGCAAAATGACCTTT
1 ATACCCCTATGTATGCAAAATGACCATT
98675414 ATACCCCTA
1 ATACCCCTA
98675423 GGGTTAATTT
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
28 35 1.00
ACGTcount: A:0.34, C:0.28, G:0.08, T:0.31
Consensus pattern (28 bp):
ATACCCCTATGTATGCAAAATGACCATT
Found at i:98675569 original size:28 final size:29
Alignment explanation
Indices: 98675528--98675590 Score: 85
Period size: 28 Copynumber: 2.2 Consensus size: 29
98675518 AGGAAGCGTC
*
98675528 CTGGTGGCTATGCCACAAATTATCTAT-T
1 CTGGTGGCTATGCCACAAAATATCTATAT
*
98675556 CTGGTGGC-ACTGCCACAAAATATCTGTAT
1 CTGGTGGCTA-TGCCACAAAATATCTATAT
98675585 CTGGTG
1 CTGGTG
98675591 ACTCTGTCAC
Statistics
Matches: 31, Mismatches: 2, Indels: 3
0.86 0.06 0.08
Matches are distributed among these distances:
27 1 0.03
28 23 0.74
29 7 0.23
ACGTcount: A:0.24, C:0.22, G:0.22, T:0.32
Consensus pattern (29 bp):
CTGGTGGCTATGCCACAAAATATCTATAT
Found at i:98675601 original size:29 final size:28
Alignment explanation
Indices: 98675538--98675601 Score: 74
Period size: 28 Copynumber: 2.2 Consensus size: 28
98675528 CTGGTGGCTA
* *
98675538 TGCCACAAATTATCTATTCTGGTGGCAC
1 TGCCACAAAATATCTATTCTGGTGACAC
* *
98675566 TGCCACAAAATATCTGTATCTGGTGACTC
1 TGCCACAAAATATCTAT-TCTGGTGACAC
*
98675595 TGTCACA
1 TGCCACA
98675602 TTTTCTGTAT
Statistics
Matches: 30, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
28 15 0.50
29 15 0.50
ACGTcount: A:0.27, C:0.25, G:0.17, T:0.31
Consensus pattern (28 bp):
TGCCACAAAATATCTATTCTGGTGACAC
Found at i:98677334 original size:34 final size:34
Alignment explanation
Indices: 98677286--98677367 Score: 110
Period size: 34 Copynumber: 2.4 Consensus size: 34
98677276 GGATAACCAG
* *** *
98677286 CCAGCACACTAAATGCTCGTATGAGCCAATCTAT
1 CCAGCACACCAAATGCTCGTATGAAAAAATCCAT
98677320 CCAGCACACCAAATGCTCGTATGAAAAAATCCAT
1 CCAGCACACCAAATGCTCGTATGAAAAAATCCAT
*
98677354 CCATCACACCAAAT
1 CCAGCACACCAAAT
98677368 AACACTGTAA
Statistics
Matches: 42, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
34 42 1.00
ACGTcount: A:0.38, C:0.32, G:0.11, T:0.20
Consensus pattern (34 bp):
CCAGCACACCAAATGCTCGTATGAAAAAATCCAT
Found at i:98679026 original size:20 final size:21
Alignment explanation
Indices: 98678982--98679026 Score: 51
Period size: 20 Copynumber: 2.2 Consensus size: 21
98678972 CAAATTTGGC
*
98678982 TTTTATTTCATTTAAATTATA
1 TTTTATTTCACTTAAATTATA
98679003 -TTTATTT-ACTT-AATTACTA
1 TTTTATTTCACTTAAATTA-TA
98679022 TTTTA
1 TTTTA
98679027 CCCTTAATTA
Statistics
Matches: 21, Mismatches: 1, Indels: 5
0.78 0.04 0.19
Matches are distributed among these distances:
18 5 0.24
19 5 0.24
20 11 0.52
ACGTcount: A:0.31, C:0.07, G:0.00, T:0.62
Consensus pattern (21 bp):
TTTTATTTCACTTAAATTATA
Found at i:98682816 original size:11 final size:12
Alignment explanation
Indices: 98682800--98682828 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
98682790 TTATTAATGG
98682800 TGAATG-ATATT
1 TGAATGAATATT
98682811 TGAATGAATATT
1 TGAATGAATATT
98682823 TGAATG
1 TGAATG
98682829 TTCTTATTGT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
11 6 0.35
12 11 0.65
ACGTcount: A:0.38, C:0.00, G:0.21, T:0.41
Consensus pattern (12 bp):
TGAATGAATATT
Found at i:98690079 original size:15 final size:16
Alignment explanation
Indices: 98690050--98690079 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
98690040 CAAACATGCT
98690050 TTAACACATTATCAAA
1 TTAACACATTATCAAA
98690066 TTAACACA-TATCAA
1 TTAACACATTATCAA
98690080 CAAGGCACCA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 6 0.43
16 8 0.57
ACGTcount: A:0.50, C:0.20, G:0.00, T:0.30
Consensus pattern (16 bp):
TTAACACATTATCAAA
Found at i:98691243 original size:25 final size:25
Alignment explanation
Indices: 98691215--98691284 Score: 95
Period size: 25 Copynumber: 2.8 Consensus size: 25
98691205 CTGTACATGT
98691215 ATGCTCACATGAGCTGTGAATCAGA
1 ATGCTCACATGAGCTGTGAATCAGA
* * *
98691240 ATGCTCACACGAGCTATGAATTAGA
1 ATGCTCACATGAGCTGTGAATCAGA
* *
98691265 ATGCTCGCATGAACTGTGAA
1 ATGCTCACATGAGCTGTGAA
98691285 AATAGTCCTG
Statistics
Matches: 38, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
25 38 1.00
ACGTcount: A:0.33, C:0.20, G:0.23, T:0.24
Consensus pattern (25 bp):
ATGCTCACATGAGCTGTGAATCAGA
Found at i:98697434 original size:5 final size:6
Alignment explanation
Indices: 98697421--98697480 Score: 57
Period size: 6 Copynumber: 9.3 Consensus size: 6
98697411 ATAATTTAAT
* * *
98697421 AAATAA AAATAA AAATCTAA AACTAA AACTAA AACTAA AAATAA AAATATA
1 AAATAA AAATAA AAA--TAA AAATAA AAATAA AAATAA AAATAA AAATA-A
98697472 AATATAA AA
1 AA-ATAA AA
98697481 CATATAATTT
Statistics
Matches: 48, Mismatches: 2, Indels: 7
0.84 0.04 0.12
Matches are distributed among these distances:
6 34 0.71
7 6 0.12
8 8 0.17
ACGTcount: A:0.73, C:0.07, G:0.00, T:0.20
Consensus pattern (6 bp):
AAATAA
Found at i:98698631 original size:44 final size:44
Alignment explanation
Indices: 98698568--98698660 Score: 186
Period size: 44 Copynumber: 2.1 Consensus size: 44
98698558 AATATTTCAT
98698568 ATACATTCGTATCGTCCCTTAGACGAGCCTACAAGGCCCAAAAC
1 ATACATTCGTATCGTCCCTTAGACGAGCCTACAAGGCCCAAAAC
98698612 ATACATTCGTATCGTCCCTTAGACGAGCCTACAAGGCCCAAAAC
1 ATACATTCGTATCGTCCCTTAGACGAGCCTACAAGGCCCAAAAC
98698656 ATACA
1 ATACA
98698661 CTTAGAAAAA
Statistics
Matches: 49, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
44 49 1.00
ACGTcount: A:0.33, C:0.31, G:0.15, T:0.20
Consensus pattern (44 bp):
ATACATTCGTATCGTCCCTTAGACGAGCCTACAAGGCCCAAAAC
Found at i:98699805 original size:38 final size:38
Alignment explanation
Indices: 98699762--98699840 Score: 149
Period size: 38 Copynumber: 2.1 Consensus size: 38
98699752 ATTTTATACC
98699762 ATTAAACATCAACATCAGTACATGTCACACATGGGTAA
1 ATTAAACATCAACATCAGTACATGTCACACATGGGTAA
*
98699800 ATTAAACATCAACATCAGTGCATGTCACACATGGGTAA
1 ATTAAACATCAACATCAGTACATGTCACACATGGGTAA
98699838 ATT
1 ATT
98699841 TTTAAACATG
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
38 40 1.00
ACGTcount: A:0.41, C:0.20, G:0.14, T:0.25
Consensus pattern (38 bp):
ATTAAACATCAACATCAGTACATGTCACACATGGGTAA
Found at i:98700619 original size:17 final size:17
Alignment explanation
Indices: 98700578--98700630 Score: 79
Period size: 17 Copynumber: 3.0 Consensus size: 17
98700568 CAATGATATG
*
98700578 CAATCTTAGATATGACATG
1 CAATCTTAGATATG--ATA
98700597 CAATCTTAGATATGATA
1 CAATCTTAGATATGATA
98700614 CAATCTTAGATATGATA
1 CAATCTTAGATATGATA
98700631 TGCAATCCTA
Statistics
Matches: 33, Mismatches: 1, Indels: 2
0.92 0.03 0.06
Matches are distributed among these distances:
17 19 0.58
19 14 0.42
ACGTcount: A:0.40, C:0.13, G:0.13, T:0.34
Consensus pattern (17 bp):
CAATCTTAGATATGATA
Found at i:98700649 original size:17 final size:19
Alignment explanation
Indices: 98700570--98700642 Score: 114
Period size: 19 Copynumber: 3.9 Consensus size: 19
98700560 ATAATCTTCA
98700570 ATGATATGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
*
98700589 ATGACATGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
98700608 ATGATA--CAATCTTAGAT
1 ATGATATGCAATCTTAGAT
*
98700625 ATGATATGCAATCCTAGA
1 ATGATATGCAATCTTAGA
98700643 AGATATGATT
Statistics
Matches: 49, Mismatches: 3, Indels: 4
0.88 0.05 0.07
Matches are distributed among these distances:
17 17 0.35
19 32 0.65
ACGTcount: A:0.38, C:0.14, G:0.15, T:0.33
Consensus pattern (19 bp):
ATGATATGCAATCTTAGAT
Found at i:98700950 original size:18 final size:19
Alignment explanation
Indices: 98700927--98700964 Score: 60
Period size: 18 Copynumber: 2.1 Consensus size: 19
98700917 TGTTTCCCTG
*
98700927 AATTTTTTTATAT-ATTTT
1 AATTTTTTTAAATAATTTT
98700945 AATTTTTTTAAATAATTTT
1 AATTTTTTTAAATAATTTT
98700964 A
1 A
98700965 GTATCATATC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 12 0.67
19 6 0.33
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (19 bp):
AATTTTTTTAAATAATTTT
Found at i:98705488 original size:55 final size:53
Alignment explanation
Indices: 98705400--98705655 Score: 231
Period size: 55 Copynumber: 4.8 Consensus size: 53
98705390 CATTAGGGTT
* *
98705400 CAAGGATACCGTGTAAGACCATGCCAAGGCATGGAAATTGGTAAGGTTTCTAAGG
1 CAAGGATACCATGTAAGACCATGCCAAGACATGG-AATTGGTAA-GTTTCTAAGG
* * * * * *
98705455 CAAGGAAATCATGTAAGACCATGTCAAGACATGGCATTGATAAGTTACTATAAGG
1 CAAGGATACCATGTAAGACCATGCCAAGACATGGAATTGGTAAGTT--TCTAAGG
* * * *
98705510 CAAAGG-TCCCATGTAAGACCATGCCAAGGCATGGCATTGGTGAG-TTCATAAGG
1 C-AAGGATACCATGTAAGACCATGCCAAGACATGGAATTGGTAAGTTTC-TAAGG
* *
98705563 TAAGGATACCATGTAAGACCATGTCAAGACATGGCAA-TGGTAAGTTTC-AA--
1 CAAGGATACCATGTAAGACCATGCCAAGACATGG-AATTGGTAAGTTTCTAAGG
* * *
98705613 -AAGGATACCACGTAAGACCATGACAAGTCATGGCAA-TGGTAAG
1 CAAGGATACCATGTAAGACCATGCCAAGACATGG-AATTGGTAAG
98705656 GTACCCGTGT
Statistics
Matches: 169, Mismatches: 25, Indels: 20
0.79 0.12 0.09
Matches are distributed among these distances:
49 40 0.24
52 7 0.04
53 39 0.23
54 12 0.07
55 67 0.40
56 4 0.02
ACGTcount: A:0.36, C:0.17, G:0.25, T:0.21
Consensus pattern (53 bp):
CAAGGATACCATGTAAGACCATGCCAAGACATGGAATTGGTAAGTTTCTAAGG
Found at i:98705607 original size:108 final size:110
Alignment explanation
Indices: 98705411--98705608 Score: 303
Period size: 108 Copynumber: 1.8 Consensus size: 110
98705401 AAGGATACCG
*
98705411 TGTAAGACCATGCCAAGGCATGGAAATTGGTAAGGTTTCTAAGGCAAGGAAATCATGTAAGACCA
1 TGTAAGACCATGCCAAGGCATGGAAATTGGTAAGGTTTCTAAGGCAAGGAAACCATGTAAGACCA
*
98705476 TGTCAAGACATGGCATTGATAAGTTACTATAAGGCAAAGGTCCCA
66 TGTCAAGACATGGCAATGATAAGTTACTATAAGGCAAAGGTCCCA
* * * *
98705521 TGTAAGACCATGCCAAGGCATGG-CATTGGTGA-G-TTCATAAGGTAAGGATACCATGTAAGACC
1 TGTAAGACCATGCCAAGGCATGGAAATTGGTAAGGTTTC-TAAGGCAAGGAAACCATGTAAGACC
*
98705583 ATGTCAAGACATGGCAATGGTAAGTT
65 ATGTCAAGACATGGCAATGATAAGTT
98705609 TCAAAAGGAT
Statistics
Matches: 80, Mismatches: 7, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
107 3 0.04
108 47 0.59
109 7 0.09
110 23 0.29
ACGTcount: A:0.35, C:0.16, G:0.26, T:0.23
Consensus pattern (110 bp):
TGTAAGACCATGCCAAGGCATGGAAATTGGTAAGGTTTCTAAGGCAAGGAAACCATGTAAGACCA
TGTCAAGACATGGCAATGATAAGTTACTATAAGGCAAAGGTCCCA
Found at i:98707602 original size:12 final size:12
Alignment explanation
Indices: 98707585--98707614 Score: 60
Period size: 12 Copynumber: 2.5 Consensus size: 12
98707575 ACATAAATAA
98707585 TCATTCTTAAAT
1 TCATTCTTAAAT
98707597 TCATTCTTAAAT
1 TCATTCTTAAAT
98707609 TCATTC
1 TCATTC
98707615 ATTCTTAATT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.30, C:0.20, G:0.00, T:0.50
Consensus pattern (12 bp):
TCATTCTTAAAT
Found at i:98707806 original size:245 final size:245
Alignment explanation
Indices: 98707376--98707865 Score: 980
Period size: 245 Copynumber: 2.0 Consensus size: 245
98707366 AATCTTTAGG
98707376 AATTTTTCAGAGTAATTCTCGAAACATTCTTTTTACTCTAGAGCCTAGGAGTAATAGGATTTCAT
1 AATTTTTCAGAGTAATTCTCGAAACATTCTTTTTACTCTAGAGCCTAGGAGTAATAGGATTTCAT
98707441 TTGTGAAATGGGCTTACAATCATCTATTATTTTTTAATAAAGCATAACTTTTATCAATTTGAACG
66 TTGTGAAATGGGCTTACAATCATCTATTATTTTTTAATAAAGCATAACTTTTATCAATTTGAACG
98707506 AGTATTGTTTCATTTTTATCAACCAATATTCCGTTAAATTTTGGCAATTCTTATTCTTTCATTTA
131 AGTATTGTTTCATTTTTATCAACCAATATTCCGTTAAATTTTGGCAATTCTTATTCTTTCATTTA
98707571 TAGCACATAAATAATCATTCTTAAATTCATTCTTAAATTCATTCATTCTT
196 TAGCACATAAATAATCATTCTTAAATTCATTCTTAAATTCATTCATTCTT
98707621 AATTTTTCAGAGTAATTCTCGAAACATTCTTTTTACTCTAGAGCCTAGGAGTAATAGGATTTCAT
1 AATTTTTCAGAGTAATTCTCGAAACATTCTTTTTACTCTAGAGCCTAGGAGTAATAGGATTTCAT
98707686 TTGTGAAATGGGCTTACAATCATCTATTATTTTTTAATAAAGCATAACTTTTATCAATTTGAACG
66 TTGTGAAATGGGCTTACAATCATCTATTATTTTTTAATAAAGCATAACTTTTATCAATTTGAACG
98707751 AGTATTGTTTCATTTTTATCAACCAATATTCCGTTAAATTTTGGCAATTCTTATTCTTTCATTTA
131 AGTATTGTTTCATTTTTATCAACCAATATTCCGTTAAATTTTGGCAATTCTTATTCTTTCATTTA
98707816 TAGCACATAAATAATCATTCTTAAATTCATTCTTAAATTCATTCATTCTT
196 TAGCACATAAATAATCATTCTTAAATTCATTCTTAAATTCATTCATTCTT
98707866 TCTGTATTCT
Statistics
Matches: 245, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
245 245 1.00
ACGTcount: A:0.31, C:0.15, G:0.10, T:0.44
Consensus pattern (245 bp):
AATTTTTCAGAGTAATTCTCGAAACATTCTTTTTACTCTAGAGCCTAGGAGTAATAGGATTTCAT
TTGTGAAATGGGCTTACAATCATCTATTATTTTTTAATAAAGCATAACTTTTATCAATTTGAACG
AGTATTGTTTCATTTTTATCAACCAATATTCCGTTAAATTTTGGCAATTCTTATTCTTTCATTTA
TAGCACATAAATAATCATTCTTAAATTCATTCTTAAATTCATTCATTCTT
Found at i:98707847 original size:12 final size:12
Alignment explanation
Indices: 98707830--98707859 Score: 60
Period size: 12 Copynumber: 2.5 Consensus size: 12
98707820 ACATAAATAA
98707830 TCATTCTTAAAT
1 TCATTCTTAAAT
98707842 TCATTCTTAAAT
1 TCATTCTTAAAT
98707854 TCATTC
1 TCATTC
98707860 ATTCTTTCTG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.30, C:0.20, G:0.00, T:0.50
Consensus pattern (12 bp):
TCATTCTTAAAT
Found at i:98712736 original size:78 final size:78
Alignment explanation
Indices: 98712606--98712900 Score: 457
Period size: 78 Copynumber: 3.8 Consensus size: 78
98712596 CGAAGAAATA
** * *
98712606 GATTTGGCATCTCCATATTCGACGGAGAGCAGATCGAAGACATAGCAGATCTGACCTTCATTGAA
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAGCAGATCTGACCTTCATTGAA
*
98712671 GCAGATCCAAGAT
66 GTAGATCCAAGAT
* * * *
98712684 GATTTCGCATCTTTGTATTAGACGGGGAGCAGATCGAAGACACAGCAAATCTGACCTTCATTGAA
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAGCAGATCTGACCTTCATTGAA
98712749 GTAGATCCAAGAT
66 GTAGATCCAAGAT
* *
98712762 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCAAAGACATAACAGAT-TGGACCTTCATTGA
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAGCAGATCT-GACCTTCATTGA
98712826 AGTAGATCCAAGAT
65 AGTAGATCCAAGAT
* *
98712840 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGGAGACATAGTAGATCTGACCTTCAT
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAGCAGATCTGACCTTCAT
98712901 ATGTTTACAT
Statistics
Matches: 196, Mismatches: 19, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
77 1 0.01
78 194 0.99
79 1 0.01
ACGTcount: A:0.31, C:0.19, G:0.24, T:0.25
Consensus pattern (78 bp):
GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAGCAGATCTGACCTTCATTGAA
GTAGATCCAAGAT
Found at i:98713034 original size:44 final size:45
Alignment explanation
Indices: 98712975--98713092 Score: 175
Period size: 45 Copynumber: 2.6 Consensus size: 45
98712965 TCGGAGATTT
* * *
98712975 GGCATCTCTGTATTAGATGGGGAGCAGATTGAAGA-AGCAAATTT
1 GGCATCTCTGTATTAGACGGGGAGCAGATTGAAGATAACAAATTG
** *
98713019 GGTGTCTCTGTATTAGACGGGGAGCAGATTGAAGATAACAGATTG
1 GGCATCTCTGTATTAGACGGGGAGCAGATTGAAGATAACAAATTG
98713064 GGCATCTCTGTATTAGACGGGGAGCAGAT
1 GGCATCTCTGTATTAGACGGGGAGCAGAT
98713093 CAAAGATAGG
Statistics
Matches: 65, Mismatches: 8, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
44 32 0.49
45 33 0.51
ACGTcount: A:0.29, C:0.13, G:0.32, T:0.26
Consensus pattern (45 bp):
GGCATCTCTGTATTAGACGGGGAGCAGATTGAAGATAACAAATTG
Found at i:98713084 original size:45 final size:44
Alignment explanation
Indices: 98712929--98713092 Score: 196
Period size: 44 Copynumber: 3.8 Consensus size: 44
98712919 ATCCAAGATG
* * *
98712929 ACAGATTTGGCATCTCTGTATTAGACGGAGAGCAAATCG--G--
1 ACAGATTTGGCATCTCTGTATTAGACGGGGAGCAGATTGAAGAA
*
98712969 --AGATTTGGCATCTCTGTATTAGATGGGGAGCAGATTGAAGAA
1 ACAGATTTGGCATCTCTGTATTAGACGGGGAGCAGATTGAAGAA
* * **
98713011 GCAAATTTGGTGTCTCTGTATTAGACGGGGAGCAGATTGAAGATA
1 ACAGATTTGGCATCTCTGTATTAGACGGGGAGCAGATTGAAGA-A
*
98713056 ACAGATTGGGCATCTCTGTATTAGACGGGGAGCAGAT
1 ACAGATTTGGCATCTCTGTATTAGACGGGGAGCAGAT
98713093 CAAAGATAGG
Statistics
Matches: 104, Mismatches: 13, Indels: 9
0.83 0.10 0.07
Matches are distributed among these distances:
38 33 0.32
40 1 0.01
44 37 0.36
45 33 0.32
ACGTcount: A:0.29, C:0.13, G:0.30, T:0.27
Consensus pattern (44 bp):
ACAGATTTGGCATCTCTGTATTAGACGGGGAGCAGATTGAAGAA
Found at i:98713477 original size:14 final size:15
Alignment explanation
Indices: 98713458--98713513 Score: 60
Period size: 18 Copynumber: 3.5 Consensus size: 15
98713448 AATCTTCAAT
98713458 GATATG-CAATCTTA
1 GATATGACAATCTTA
98713472 GATATGATACAATCTTA
1 GATATG--ACAATCTTA
98713489 GATATGATTGCAATCTTA
1 GATATGA---CAATCTTA
98713507 GATATGA
1 GATATGA
98713514 TATGCAATCT
Statistics
Matches: 36, Mismatches: 0, Indels: 8
0.82 0.00 0.18
Matches are distributed among these distances:
14 6 0.17
15 1 0.03
17 14 0.39
18 15 0.42
ACGTcount: A:0.38, C:0.11, G:0.16, T:0.36
Consensus pattern (15 bp):
GATATGACAATCTTA
Found at i:98713502 original size:35 final size:37
Alignment explanation
Indices: 98713456--98713534 Score: 121
Period size: 35 Copynumber: 2.2 Consensus size: 37
98713446 ATAATCTTCA
98713456 ATGATATGCAATCTTAGATATGATA-CAATCTTAGAT
1 ATGATATGCAATCTTAGATATGATAGCAATCTTAGAT
98713492 ATGAT-TGCAATCTTAGATATGATATGCAATCTTAGA-
1 ATGATATGCAATCTTAGATATGATA-GCAATCTTAGAT
98713528 A-GATATG
1 ATGATATG
98713535 ATTTTGTAAT
Statistics
Matches: 40, Mismatches: 0, Indels: 6
0.87 0.00 0.13
Matches are distributed among these distances:
35 22 0.55
36 8 0.20
37 10 0.25
ACGTcount: A:0.38, C:0.10, G:0.16, T:0.35
Consensus pattern (37 bp):
ATGATATGCAATCTTAGATATGATAGCAATCTTAGAT
Found at i:98713534 original size:17 final size:19
Alignment explanation
Indices: 98713456--98713527 Score: 123
Period size: 19 Copynumber: 3.9 Consensus size: 19
98713446 ATAATCTTCA
98713456 ATGATATGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
98713475 ATGATA--CAATCTTAGAT
1 ATGATATGCAATCTTAGAT
98713492 ATGAT-TGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
98713510 ATGATATGCAATCTTAGA
1 ATGATATGCAATCTTAGA
98713528 AGATATGATT
Statistics
Matches: 50, Mismatches: 0, Indels: 6
0.89 0.00 0.11
Matches are distributed among these distances:
17 16 0.32
18 16 0.32
19 18 0.36
ACGTcount: A:0.38, C:0.11, G:0.15, T:0.36
Consensus pattern (19 bp):
ATGATATGCAATCTTAGAT
Found at i:98713553 original size:22 final size:22
Alignment explanation
Indices: 98713456--98713550 Score: 79
Period size: 17 Copynumber: 4.8 Consensus size: 22
98713446 ATAATCTTCA
98713456 ATGATATGCAATCTT---AGAT
1 ATGATATGCAATCTTAGAAGAT
98713475 ATGATA--CAATCTT---AGAT
1 ATGATATGCAATCTTAGAAGAT
98713492 ATGAT-TGCAATCTT---AGAT
1 ATGATATGCAATCTTAGAAGAT
98713510 ATGATATGCAATCTTAGAAGAT
1 ATGATATGCAATCTTAGAAGAT
* *
98713532 ATGATTTTGTAATCTTAGA
1 ATGA-TATGCAATCTTAGA
98713551 GATTTAATTT
Statistics
Matches: 67, Mismatches: 2, Indels: 10
0.85 0.03 0.13
Matches are distributed among these distances:
17 16 0.24
18 16 0.24
19 15 0.22
22 8 0.12
23 12 0.18
ACGTcount: A:0.37, C:0.09, G:0.16, T:0.38
Consensus pattern (22 bp):
ATGATATGCAATCTTAGAAGAT
Found at i:98713841 original size:18 final size:19
Alignment explanation
Indices: 98713818--98713854 Score: 58
Period size: 18 Copynumber: 2.0 Consensus size: 19
98713808 TGTTTCCCTG
*
98713818 ATTTTTTTATAT-ATTTTA
1 ATTTTTTTAAATAATTTTA
98713836 ATTTTTTTAAATAATTTTA
1 ATTTTTTTAAATAATTTTA
98713855 GTATCATATC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 11 0.65
19 6 0.35
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (19 bp):
ATTTTTTTAAATAATTTTA
Found at i:98724959 original size:34 final size:35
Alignment explanation
Indices: 98724892--98724960 Score: 88
Period size: 34 Copynumber: 2.0 Consensus size: 35
98724882 AAATATCTAA
* *
98724892 ATATATCATATATCTTTCCTATTTAGGATTATATT
1 ATATATCATATATATTTCCTATTTAGGAATATATT
*
98724927 ATATAT-ATATATATTTCTTATCTT-GGAATATATT
1 ATATATCATATATATTTCCTAT-TTAGGAATATATT
98724961 TTTTAAATAA
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
34 22 0.73
35 8 0.27
ACGTcount: A:0.33, C:0.09, G:0.06, T:0.52
Consensus pattern (35 bp):
ATATATCATATATATTTCCTATTTAGGAATATATT
Found at i:98725708 original size:21 final size:20
Alignment explanation
Indices: 98725663--98725723 Score: 63
Period size: 21 Copynumber: 3.0 Consensus size: 20
98725653 ACATTTTCTT
* *
98725663 AAAAATGTTTTAAAAAT-AA
1 AAAAATATTTAAAAAATAAA
98725682 AAAAAT-TCTTAAAAAATAAA
1 AAAAATAT-TTAAAAAATAAA
*
98725702 TAAAAATATTTAAAATATAAA
1 -AAAAATATTTAAAAAATAAA
98725723 A
1 A
98725724 TAATTAAAAT
Statistics
Matches: 36, Mismatches: 2, Indels: 7
0.80 0.04 0.16
Matches are distributed among these distances:
18 1 0.03
19 14 0.39
20 3 0.08
21 17 0.47
22 1 0.03
ACGTcount: A:0.67, C:0.02, G:0.02, T:0.30
Consensus pattern (20 bp):
AAAAATATTTAAAAAATAAA
Found at i:98725723 original size:17 final size:16
Alignment explanation
Indices: 98725699--98725733 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
98725689 CTTAAAAAAT
*
98725699 AAATA-AAAATATTTA
1 AAATATAAAATAATTA
98725714 AAATATAAAATAATTA
1 AAATATAAAATAATTA
98725730 AAAT
1 AAAT
98725734 TAATATATAT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 5 0.28
16 13 0.72
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (16 bp):
AAATATAAAATAATTA
Found at i:98726470 original size:23 final size:23
Alignment explanation
Indices: 98726423--98726470 Score: 69
Period size: 23 Copynumber: 2.1 Consensus size: 23
98726413 AATGGACTTA
*
98726423 TATTTGTCTTCGGTTTTAATTTT
1 TATTTGTCTTCGGTTTTAATCTT
* *
98726446 TATTTGTCTTTGGTTTTACTCTT
1 TATTTGTCTTCGGTTTTAATCTT
98726469 TA
1 TA
98726471 ATGAAAAAAA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.12, C:0.10, G:0.12, T:0.65
Consensus pattern (23 bp):
TATTTGTCTTCGGTTTTAATCTT
Found at i:98727221 original size:22 final size:22
Alignment explanation
Indices: 98727196--98727238 Score: 52
Period size: 23 Copynumber: 2.0 Consensus size: 22
98727186 CTTGTTGGCA
98727196 ATTT-AGTGGATTATAGTGCGTG
1 ATTTGAGTGGATTATAG-GCGTG
* *
98727218 ATTTGTGTGGATTTTAGGCGT
1 ATTTGAGTGGATTATAGGCGT
98727239 TTTTGGATTG
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
22 8 0.44
23 10 0.56
ACGTcount: A:0.19, C:0.05, G:0.33, T:0.44
Consensus pattern (22 bp):
ATTTGAGTGGATTATAGGCGTG
Found at i:98733139 original size:92 final size:93
Alignment explanation
Indices: 98732962--98733186 Score: 267
Period size: 92 Copynumber: 2.4 Consensus size: 93
98732952 TTGATGGTGT
* * * *
98732962 AAAAA-ACCCTCAAACTTTTTCAAAAAAAGTAATGAAGCCTCTCCTTTTTTCTTTTTTTGCACTA
1 AAAAAGACCCTCAAAC-TTTTC-AAAAAAGCAATTAAGCCTCTACTTATTTCTTTTTTTGCACTA
*
98733026 AATTGAGCACTTGAACTTTCAAAATGCACC
64 AATTGAGCACTTGAACTTTCAAAATGAACC
* *
98733056 AAAAAGGCCCTCAAACTTCTTCAAAAAAGCAATTAAGCCTCTACTTATTT-TTTTTTT-CACTCA
1 AAAAAGACCCTCAAACTT-TTCAAAAAAGCAATTAAGCCTCTACTTATTTCTTTTTTTGCACTAA
* * *
98733119 ATTGGGTACTTGAACTTTCAAAATGAATC
65 ATTGAGCACTTGAACTTTCAAAATGAACC
* * **
98733148 AAAAAGATCCTAAAAAAATTTCAAAAAAGCAATTAAGCC
1 AAAAAGACCCT-CAAACTTTTCAAAAAAGCAATTAAGCC
98733187 CCTAGTCTTA
Statistics
Matches: 113, Mismatches: 15, Indels: 8
0.83 0.11 0.06
Matches are distributed among these distances:
92 59 0.52
93 11 0.10
94 31 0.27
95 12 0.11
ACGTcount: A:0.39, C:0.20, G:0.09, T:0.32
Consensus pattern (93 bp):
AAAAAGACCCTCAAACTTTTCAAAAAAGCAATTAAGCCTCTACTTATTTCTTTTTTTGCACTAAA
TTGAGCACTTGAACTTTCAAAATGAACC
Found at i:98733244 original size:18 final size:19
Alignment explanation
Indices: 98733221--98733269 Score: 57
Period size: 19 Copynumber: 2.6 Consensus size: 19
98733211 AAAAGTTATA
98733221 AAAAATAATAAATTTT-AG
1 AAAAATAATAAATTTTAAG
* *
98733239 AAAAATTATTAAATTTTAAT
1 AAAAA-TAATAAATTTTAAG
98733259 AAAAAT-ATAAA
1 AAAAATAATAAA
98733270 AAAATAAAAA
Statistics
Matches: 26, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
18 9 0.35
19 11 0.42
20 6 0.23
ACGTcount: A:0.63, C:0.00, G:0.02, T:0.35
Consensus pattern (19 bp):
AAAAATAATAAATTTTAAG
Found at i:98733277 original size:16 final size:16
Alignment explanation
Indices: 98733256--98733290 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
98733246 ATTAAATTTT
98733256 AATAAAAATATAAAAA
1 AATAAAAATATAAAAA
* *
98733272 AATAAAAATTTATAAA
1 AATAAAAATATAAAAA
98733288 AAT
1 AAT
98733291 CGTATAAAAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26
Consensus pattern (16 bp):
AATAAAAATATAAAAA
Found at i:98733289 original size:11 final size:10
Alignment explanation
Indices: 98733210--98733341 Score: 53
Period size: 10 Copynumber: 13.4 Consensus size: 10
98733200 AAAATTAGAA
*
98733210 AAAAAGTTAT
1 AAAAATTTAT
* *
98733220 AAAAAATAAT
1 AAAAATTTAT
* *
98733230 -AAATTTTAG
1 AAAAATTTAT
98733239 AAAAA-TTAT
1 AAAAATTTAT
* *
98733248 TAAATTTTAAT
1 AAAAATTT-AT
98733259 AAAAA--TAT
1 AAAAATTTAT
*
98733267 AAAAA--AAT
1 AAAAATTTAT
98733275 AAAAATTTAT
1 AAAAATTTAT
*
98733285 AAAAATCGTAT
1 AAAAAT-TTAT
*
98733296 AAAAATAATTGT
1 AAAAAT--TTAT
*
98733308 AAAATTTTAT
1 AAAAATTTAT
*
98733318 AAAAA-TCAT
1 AAAAATTTAT
*
98733327 AAAAAAATTAT
1 -AAAAATTTAT
98733338 AAAA
1 AAAA
98733342 TGCATCAAAA
Statistics
Matches: 90, Mismatches: 23, Indels: 18
0.69 0.18 0.14
Matches are distributed among these distances:
8 14 0.16
9 15 0.17
10 37 0.41
11 17 0.19
12 7 0.08
ACGTcount: A:0.64, C:0.02, G:0.03, T:0.32
Consensus pattern (10 bp):
AAAAATTTAT
Found at i:98733317 original size:33 final size:30
Alignment explanation
Indices: 98733239--98733342 Score: 126
Period size: 30 Copynumber: 3.5 Consensus size: 30
98733229 TAAATTTTAG
*
98733239 AAAAATTATTAAATTTTAATAAAAAT-ATAA
1 AAAAATTATAAAATTTT-ATAAAAATCATAA
98733269 AAAAA-TA-AAAA-TTTATAAAAATCGTATAA
1 AAAAATTATAAAATTTTATAAAAATC--ATAA
*
98733298 AAATAATTGTAAAATTTTATAAAAATCATAA
1 AAA-AATTATAAAATTTTATAAAAATCATAA
98733329 AAAAATTATAAAAT
1 AAAAATTATAAAAT
98733343 GCATCAAAAA
Statistics
Matches: 64, Mismatches: 3, Indels: 14
0.79 0.04 0.17
Matches are distributed among these distances:
26 8 0.12
27 3 0.05
28 3 0.05
29 9 0.14
30 17 0.27
31 8 0.12
32 4 0.06
33 12 0.19
ACGTcount: A:0.63, C:0.02, G:0.02, T:0.33
Consensus pattern (30 bp):
AAAAATTATAAAATTTTATAAAAATCATAA
Found at i:98733616 original size:48 final size:45
Alignment explanation
Indices: 98733553--98733648 Score: 122
Period size: 45 Copynumber: 2.1 Consensus size: 45
98733543 TTTATGAAAC
*
98733553 TTATATTTCTTTATATTTTGTATAATTTTCTAACGA-CTTTATAAAATT
1 TTATATTTCTATATA-TTT-TAT-ATTTT-TAACGATCTTTATAAAATT
* *
98733601 TTATATTTCTATATATTTTATATTTTTTACGATTTTTATAAAATT
1 TTATATTTCTATATATTTTATATTTTTAACGATCTTTATAAAATT
98733646 TTA
1 TTA
98733649 CAAATTTTTA
Statistics
Matches: 44, Mismatches: 3, Indels: 5
0.85 0.06 0.10
Matches are distributed among these distances:
44 5 0.11
45 19 0.43
46 3 0.07
47 3 0.07
48 14 0.32
ACGTcount: A:0.31, C:0.06, G:0.03, T:0.59
Consensus pattern (45 bp):
TTATATTTCTATATATTTTATATTTTTAACGATCTTTATAAAATT
Found at i:98733718 original size:56 final size:55
Alignment explanation
Indices: 98733616--98733721 Score: 133
Period size: 56 Copynumber: 1.9 Consensus size: 55
98733606 TTTCTATATA
* **
98733616 TTTTATATTTTTTACGATTTTTATAAAATTTTACAAATTTTTATTTTTTTACGAT
1 TTTTATATTTTTTACAATTTTTATAAAATTTTACAAATTTGAATTTTTTTACGAT
* * *
98733671 TTTTATATTTTTTTCTAATTTTTAATAAATTTTTA-ATATTTGAATTTTTTT
1 TTTTATATTTTTTAC-AATTTTT-ATAAAATTTTACAAATTTGAATTTTTTT
98733722 TAATTAAAAT
Statistics
Matches: 43, Mismatches: 6, Indels: 3
0.83 0.12 0.06
Matches are distributed among these distances:
55 14 0.33
56 19 0.44
57 10 0.23
ACGTcount: A:0.28, C:0.04, G:0.03, T:0.65
Consensus pattern (55 bp):
TTTTATATTTTTTACAATTTTTATAAAATTTTACAAATTTGAATTTTTTTACGAT
Found at i:98733781 original size:20 final size:22
Alignment explanation
Indices: 98733753--98733795 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
98733743 TATAGCTTTT
*
98733753 ATTG-ATTT-TAATTTTTTATA
1 ATTGTATTTCTAATTTTTAATA
*
98733773 ATTGTTTTTCTAATTTTTAATA
1 ATTGTATTTCTAATTTTTAATA
98733795 A
1 A
98733796 AAGCAAGGGC
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
20 4 0.21
21 3 0.16
22 12 0.63
ACGTcount: A:0.30, C:0.02, G:0.05, T:0.63
Consensus pattern (22 bp):
ATTGTATTTCTAATTTTTAATA
Found at i:98733975 original size:91 final size:90
Alignment explanation
Indices: 98733802--98734011 Score: 252
Period size: 90 Copynumber: 2.4 Consensus size: 90
98733792 ATAAAAGCAA
* * * *
98733802 GGGCTTAATTACTTTTTTTGAAAAAAGTTTGAGGGTCTTTTTGATGCATTTTGAAAGTTCAAGTA
1 GGGCTTAATTACTTTTTTTGAAAAAAGTTTGAGGGCCTTTTTGATACATTTTAAAAGCTCAAGTA
* **
98733867 TCCAATTGAGGGTAAAAAAAAAGTAG
66 CCCAA-TGAAAGTAAAAAAAAAGTAG
*
98733893 GGGCTTAATTACTTTTTTTGAAAATA-TTTGAGGGCCTTTTTGATACATTTTAAAAGCTCAAGTA
1 GGGCTTAATTACTTTTTTTGAAAAAAGTTTGAGGGCCTTTTTGATACATTTTAAAAGCTCAAGTA
98733957 CCCAA-GAAAGTACAAAAAAAA--A-
66 CCCAATGAAAGTA-AAAAAAAAGTAG
* *
98733979 -GACTTAATTGTCTTTTTTTGTAAAAAAGTTTGA
1 GGGCTTAATT-ACTTTTTTTG-AAAAAAGTTTGA
98734012 AAGCTTTTTG
Statistics
Matches: 104, Mismatches: 11, Indels: 11
0.83 0.09 0.09
Matches are distributed among these distances:
85 8 0.08
86 9 0.09
87 6 0.06
88 10 0.10
89 8 0.08
90 38 0.37
91 25 0.24
ACGTcount: A:0.36, C:0.10, G:0.18, T:0.37
Consensus pattern (90 bp):
GGGCTTAATTACTTTTTTTGAAAAAAGTTTGAGGGCCTTTTTGATACATTTTAAAAGCTCAAGTA
CCCAATGAAAGTAAAAAAAAAGTAG
Found at i:98742209 original size:22 final size:24
Alignment explanation
Indices: 98742167--98742210 Score: 65
Period size: 22 Copynumber: 1.9 Consensus size: 24
98742157 TGATAATATG
98742167 TTTTGATATAACAAATTAAAGTGC
1 TTTTGATATAACAAATTAAAGTGC
*
98742191 TTTTGA-ATAA-AAGTTAAAGT
1 TTTTGATATAACAAATTAAAGT
98742211 TGAACAAAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 9 0.47
23 4 0.21
24 6 0.32
ACGTcount: A:0.43, C:0.05, G:0.14, T:0.39
Consensus pattern (24 bp):
TTTTGATATAACAAATTAAAGTGC
Found at i:98744695 original size:29 final size:31
Alignment explanation
Indices: 98744654--98744718 Score: 98
Period size: 30 Copynumber: 2.2 Consensus size: 31
98744644 GCCTAATGTG
* *
98744654 CAATCATATACAC-AAACTTTAATTTT-GTT
1 CAATTATATACACAAAACTTTAATTTTAATT
98744683 CAATTATATACACAAAACTTTAATTTTAATT
1 CAATTATATACACAAAACTTTAATTTTAATT
98744714 CAATT
1 CAATT
98744719 CGCCCGTACC
Statistics
Matches: 32, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
29 12 0.38
30 13 0.41
31 7 0.22
ACGTcount: A:0.42, C:0.15, G:0.02, T:0.42
Consensus pattern (31 bp):
CAATTATATACACAAAACTTTAATTTTAATT
Found at i:98754793 original size:26 final size:26
Alignment explanation
Indices: 98754757--98754866 Score: 157
Period size: 26 Copynumber: 4.2 Consensus size: 26
98754747 TGATACAAAT
* *
98754757 TGATAAAAGGTTAGGTAAATATTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
98754783 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
* *
98754809 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCA
* *
98754835 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCA
*
98754861 TAATAA
1 TGATAA
98754867 GAATTTCATG
Statistics
Matches: 79, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 79 1.00
ACGTcount: A:0.36, C:0.05, G:0.23, T:0.35
Consensus pattern (26 bp):
TGATAATAGGTTAGGTAAATGTTCCA
Found at i:98756403 original size:26 final size:26
Alignment explanation
Indices: 98756351--98756403 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
98756341 TTTACAGTTT
*
98756351 TACCCCTAGGAGATAAATTATCGAAA
1 TACCCCTAGGAGATAAATTACCGAAA
* *
98756377 TACCCCTAGG-GTTAAATTGACCTAAA
1 TACCCCTAGGAGATAAATT-ACCGAAA
98756403 T
1 T
98756404 GCATGTTTGA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
25 7 0.30
26 16 0.70
ACGTcount: A:0.38, C:0.21, G:0.15, T:0.26
Consensus pattern (26 bp):
TACCCCTAGGAGATAAATTACCGAAA
Found at i:98761715 original size:15 final size:16
Alignment explanation
Indices: 98761690--98761725 Score: 56
Period size: 15 Copynumber: 2.3 Consensus size: 16
98761680 TTTGAATAAA
98761690 TATTATTTAAAATTAT
1 TATTATTTAAAATTAT
*
98761706 TATT-TTTAAATTTAT
1 TATTATTTAAAATTAT
98761721 TATTA
1 TATTA
98761726 AAAAAATTAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
15 14 0.78
16 4 0.22
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (16 bp):
TATTATTTAAAATTAT
Found at i:98762894 original size:16 final size:16
Alignment explanation
Indices: 98762873--98762906 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 16
98762863 TATAAATAAT
98762873 TTAAAATAAATG-TATA
1 TTAAAA-AAATGATATA
98762889 TTAAAAAAATGATATA
1 TTAAAAAAATGATATA
98762905 TT
1 TT
98762907 CAAACCATCA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 5 0.29
16 12 0.71
ACGTcount: A:0.56, C:0.00, G:0.06, T:0.38
Consensus pattern (16 bp):
TTAAAAAAATGATATA
Found at i:98765504 original size:1 final size:1
Alignment explanation
Indices: 98765500--98766783 Score: 984
Period size: 1 Copynumber: 1284.0 Consensus size: 1
98765490 TTTTTAATGG
* * * *
98765500 AAAAAAATAAAAAAAAAAAAAAAAAAAAAAATAAAAAAAAAAAAAAAAAAAAAAAAAAAAATAAG
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
* ** *** ** * * ** * *
98765565 AAAAAAATATTAAAAACCGAAAAAATTAAAAAAAAAAAAAAATATAACCAAAAAAAACAAAAACA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
* * * * * *
98765630 AAAAAAAAAAAAAAAAAGAAAAAAACAAAAAAAAAAGAAGAAAAAAAAGAAAAAAAAAAAAAAAC
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
* * * * * * *
98765695 AAAAAAAAAATAAAAAAAAAATAAAAACAAAAATAAAAAAAGAAATAAAAAGAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
* * * * * * *** *
98765760 AAAAAAAATAAAAACAAAAAAATAAATAAAAAAGAAAATATTTAAAAAAAAAGAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
* * * ** * * * **** * *
98765825 TACAGAAAAAAAACCAGAAAAAAAAAAAGATAAAAATTTTAAAAAAAAAAAAAAAAAAATAAAAT
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
* * * * * * * * *
98765890 AACAAAAAAAAAAAAAGAAAAACAAAAAACAAAAAAAAAAAAAAAACAAAAAATAGAAAACAAAG
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
* * * * * * * * * * *
98765955 AAAAAGAAAAGAAGAACATAAAAATAAAAAAAAAAAAAAAAAAAATAACAAAAATAAAAAATATA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
* * ** * * *
98766020 AAAAAAAACAAAAAAAAATAAAAAAAAAAAAATTAAATAAAAATAACAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
** * * * * * *
98766085 AAAAAACGAAAAAAAAAAAAAAAAATAAAAAAAAAGAAAAAAAAAATATAAAAAAAAGAAAGAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
* ** * * ** * * *
98766150 AAAGAAAAAAGCAATAAAAAAAAAAAAAAAAAAAAAGAAAATTAAAAATAAAAAAAAACAAATAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
* * * * * * * *
98766215 AAAAAAAAAAAAACAATAAAAAAAAATAAAATAAAAACAAAAAAACAATAAAAATAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
* * * * * * **
98766280 AGAAAAAGAAAAAAAAAACAAAAAAAAAAAGATAAAAATAAAAAAAAAAAAAAAAAAACTAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
* * * ** * * *
98766345 TAACAAAAAAAAAAAAAAAAAAAATAAAAAAAAAATGAAAAATAAACAAAAAAAAAAAAAAATAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
* * * * * * * * * * *
98766410 AAAAAAATATAAAAAAAAAAAAAAAAAAATAAATATAAAGAAATAAAAAAATACAAAAAACAGAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
** * * * **
98766475 AATTAAAAAAAAAAAAAAAAATAAAAAAAAAAAAATAAAAAAAAATAAAAAATTAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
* * * * * * * ** *
98766540 AAAGAAATAAAAAATAAAATAAAAAATAATAAAAGAAAAAAAAAAAAAAAAAAAAAAGGAAAAAC
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
* * * *** * * * * *
98766605 AAGAAAAAAATAAAAAAGAAAAAAAAAATGGAATATAATAAAAAAAAAAGATAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
* * * * * * * **
98766670 AAAAAAAAAAAATAAAAAAAAAAAAAAAAAAATACAGAAAAAAAGAAAAATAAACAAACTAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
* * * *
98766735 AAAAAATAAAGAAAAAATAAAAAAAAACAAAAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
98766784 TAATAAAATT
Statistics
Matches: 970, Mismatches: 313, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
1 970 1.00
ACGTcount: A:0.86, C:0.03, G:0.03, T:0.07
Consensus pattern (1 bp):
A
Found at i:98766270 original size:444 final size:421
Alignment explanation
Indices: 98765501--98766791 Score: 1207
Period size: 437 Copynumber: 3.0 Consensus size: 421
98765491 TTTTAATGGA
*
98765501 AAAAAATAAAAAAAAAA--AAAAA-AAA-AAAAATAAAAAAAAAA-AAAAAAAAAAAAAAAAAAA
1 AAAAAATAAAAAAAAAATGAAAAACAAACAAAAA-AAAAAAAAAATAAAAATAAAAAAAAAAAAA
** *
98765561 TAAGAAAAAAATATTAAAAACCGAAAAAAT-TAAAAAAAAA-AAAAAATATAACCAAAAAAAACA
65 -AA-AAAAAAA-A--AAAAA-ATAAAAAATATAAAAAAAAACAAAAAA-A-AA-TAAAAAAAA-A
* * *
98765624 AAAA-CAAA-AAAAAAAAAAAAAAAGAAAAAAACAAAAAAAAAAGAAGAAAAAAAAGAAAAAA-A
120 AAAATTAAATAAAAAAACAAAAAAA-AAAAAAA-AAAAAAAAAAGAA-AAAAAAAAAAAAAAATA
* * *
98765686 AAAAAAAACAAAAAAAAAATAAAAAAAAAATAAAAACAAAAATAAAAA-AAGAAATAAAAAGAAA
182 AAAAAAAAGAAAAAAAAAATAAAAAAAAAA-AAAAA-AAAAA-AAAAAGAA-AAAAAAAAAAAAA
* **
98765750 AAAAAAAAA-AAAAAAAAATAAAAACAAAAAAATAAATAAAAAAGAAAATATTTAAAAAAAAAGA
243 AAAAAAAAAGAAAAAAAAATAAAAA-AAAAAAATAAA-AAAAAA-AAAAAAAATAAAAAAAAA-A
* * ***
98765814 AAA-AAAAAAAATACAGAAAAAAAA-CCAGAAAAAAAAA-AAGATAAAAATTTTAAAAA-AAAAA
304 AAATAAAAAAAA-A-AAAAAAAAAATACAGAAAAAAAAAGAA-A-AAAAA-AAAAAAAACAAAAA
*
98765875 AAAAAAAAATAAAATAACAAAAAAAAAAAAAGAAAA-ACAAAA-AAC-AAAAAAAAAAAAA
364 AAAAAAAAAAAAAATAA-AAAAAAAAAAAAA-AAAACA-AAAATAACAAAAAAAAAAAAAA
* * * * * * * * *
98765933 AAACAA-AAAATAGAAA--ACAAAGAAA-AAGAAAAGAAGAACATAAAAATAAAAAAAAAAAAAA
1 AAAAAATAAAAAAAAAATGAAAAACAAACAAAAAAAAAAAAAAATAAAAATAAAAAAAAAAAAAA
* *
98765994 AAAAAATAACAAAAATAAAAAATATAAAAAAAAACAAAAAAAAATAAAAAAAAAAAAATTAAATA
66 AAAAAAAAAAAAAAATAAAAAATATAAAAAAAAACAAAAAAAAATAAAAAAAAAAAAATTAAATA
98766059 AAAATAACAAAAAAAAAAAAAAAAAAAAAAAACGAAAAAAAAAAAAAAAAATAAAAAAAAAGAAA
131 AAAA-AACAAAAAAAAAAAAAAAAAAAAAAAA-GAAAAAAAAAAAAAAAAATAAAAAAAAAGAAA
* *
98766124 AAAAAAATATAAAAAAAAGAAAGAAAAAAGAAAAAAGCAATAAAAAAAAAAAAAAAAAAAAAGAA
194 AAAAAAATA-AAAAAAAA-AAA-AAAAAAAAAAAAAG-AAAAAAAAAAAAAAAAAAAAAAAAGAA
98766189 AATTAAAAATAAAAAAAAACAAATAAAAAAAAAAAAAAACAATAAAAAAAAATAAAATAAAAACA
255 AA--AAAAATAAAAAAAAA-AAATAAAAAAAAAAAAAAA-AATAAAAAAAAA-AAAATAAAAA-A
* * *
98766254 AAAAAACAATAAAAATA-A-AAAAAAAAAGAAAAAGAAAAAAAAAACAAAAAAAAAAAGATAAAA
314 AAAAAA-AA-AAAAATACAGAAAAAAAAAGAAAAAAAAAAAAAAAACAAAAAAAAAAAAAAAAAA
98766317 ATAAAAAAAAAAAAAAAAAAACTAAAAATAACAAAAAAAAAAAAAA
377 ATAAAAAAAAAAAAAAAAAAAC-AAAAATAACAAAAAAAAAAAAAA
*
98766363 AAAAAATAAAAAAAAAATGAAAAATAAACAAAAAAAAAAAAAAATAAAAA-AAAATATAAAAAAA
1 AAAAAATAAAAAAAAAATGAAAAACAAACAAAAAAAAAAAAAAATAAAAATAAAA-A-AAAAAAA
*
98766427 AAAAAAAAAAAATAAATATAAAGAAATA-AAAAAATACAA-AAAACAGAAAATTAAAAAAAAAAA
64 AAAAAAAAAAAA-AAAAATAAA-AAATATAAAAAA-A-AACAAAA-A-AAAA-TAAAAAAAAAAA
* * * **
98766490 AA-AAAATAAAAAAA-AAAAAATAAAAAAAAATAAAAAATTAAAAAAAAAAAAAAGAAATAAAAA
122 AATTAAATAAAAAAACAAAAAAAAAAAAAAAAAAAAAAAAGAAAAAAAAAAAAAA-AAATAAAAA
* * * * *
98766553 ATAAA-ATAAAAAATAATAAAAGAAAAAAAAAAAAAAAAAAAAAAGGAAAAACAAGAAAAAAATA
186 A-AAAGA-AAAAAAAAAT-AAA-AAAAAAAAAAAAAAAAAAAAAAGAAAAAAAAAAAAAAAAAAA
*
98766617 AAAAAGAAAAAAAAAATGGAATATAATAAAAAAA-AAAGATAAAAAAAAAAAA-AAAAAAAAAAA
247 AAAAAG-AAAAAAAAAT--AA-A-AA-AAAAAAATAAA-AAAAAAAAAAAAAATAAAAAAAAAAA
98766680 AATAAAAAAAAAAAAAAAAAAATACAGAAAAAAAGAA-AAATAAACAAACTAAAAAAA-AAAATA
305 AATAAAAAAAAAAAAAAAAAAATACAGAAAAAAA-AAGAAA-AAA-AAA--AAAAAAACAAAA-A
*
98766743 AAGAAAAAATAAAAAA-AAACAAAAAAAAAAAAAAAA-AAAAATAATAAAA
364 AA-AAAAAA-AAAAAATAAA-AAAAAAAAAAAAAAAACAAAAATAACAAAA
98766792 TTTTAACAAT
Statistics
Matches: 729, Mismatches: 64, Indels: 125
0.79 0.07 0.14
Matches are distributed among these distances:
424 5 0.01
425 35 0.05
426 50 0.07
427 61 0.08
428 43 0.06
429 54 0.07
430 60 0.08
431 40 0.05
432 30 0.04
433 18 0.02
434 21 0.03
435 40 0.05
436 62 0.09
437 73 0.10
438 32 0.04
439 58 0.08
440 26 0.04
441 21 0.03
ACGTcount: A:0.86, C:0.03, G:0.03, T:0.07
Consensus pattern (421 bp):
AAAAAATAAAAAAAAAATGAAAAACAAACAAAAAAAAAAAAAAATAAAAATAAAAAAAAAAAAAA
AAAAAAAAAAAAAAATAAAAAATATAAAAAAAAACAAAAAAAAATAAAAAAAAAAAAATTAAATA
AAAAAACAAAAAAAAAAAAAAAAAAAAAAAAGAAAAAAAAAAAAAAAAATAAAAAAAAAGAAAAA
AAAAATAAAAAAAAAAAAAAAAAAAAAAAAAGAAAAAAAAAAAAAAAAAAAAAAAAGAAAAAAAA
ATAAAAAAAAAAAATAAAAAAAAAAAAAAAAATAAAAAAAAAAAAATAAAAAAAAAAAAAAAAAA
ATACAGAAAAAAAAAGAAAAAAAAAAAAAAAACAAAAAAAAAAAAAAAAAAATAAAAAAAAAAAA
AAAAAAACAAAAATAACAAAAAAAAAAAAAA
Found at i:98772938 original size:44 final size:45
Alignment explanation
Indices: 98772850--98772938 Score: 135
Period size: 44 Copynumber: 2.0 Consensus size: 45
98772840 AGAACAGAAA
* *
98772850 TGAGCCATGTAAGTCCATATTAGAAATATGGCTTTGGAGACAGGAT
1 TGAGCAATGTAAGTCCATATTA-AAATATGGCATTGGAGACAGGAT
*
98772896 TGAGCAATGTAAGTCCATATT-ATATATGGCATTGGAGACAGGA
1 TGAGCAATGTAAGTCCATATTAAAATATGGCATTGGAGACAGGA
98772939 ATAATTCATG
Statistics
Matches: 40, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
44 20 0.50
46 20 0.50
ACGTcount: A:0.34, C:0.12, G:0.26, T:0.28
Consensus pattern (45 bp):
TGAGCAATGTAAGTCCATATTAAAATATGGCATTGGAGACAGGAT
Found at i:98772950 original size:44 final size:44
Alignment explanation
Indices: 98772855--98772957 Score: 127
Period size: 44 Copynumber: 2.3 Consensus size: 44
98772845 AGAAATGAGC
* * *
98772855 CATGTAAGTCCATATTAGAAATATGGCTTTGGAGACAGGATTGAG
1 CATGTAAGTCCATATTA-AAATATGGCATTGGAGACAGGAATAAG
* *
98772900 CAATGTAAGTCCATATT-ATATATGGCATTGGAGACAGGAATAATT
1 C-ATGTAAGTCCATATTAAAATATGGCATTGGAGACAGGAATAA-G
98772945 CATGTAAGTCCAT
1 CATGTAAGTCCAT
98772958 GTCAAAGACA
Statistics
Matches: 51, Mismatches: 5, Indels: 5
0.84 0.08 0.08
Matches are distributed among these distances:
44 34 0.67
45 2 0.04
46 15 0.29
ACGTcount: A:0.35, C:0.13, G:0.22, T:0.30
Consensus pattern (44 bp):
CATGTAAGTCCATATTAAAATATGGCATTGGAGACAGGAATAAG
Found at i:98774217 original size:10 final size:10
Alignment explanation
Indices: 98774202--98774233 Score: 57
Period size: 10 Copynumber: 3.3 Consensus size: 10
98774192 GTTACACATT
98774202 TAATTAAAGA
1 TAATTAAAGA
98774212 TAATTAAAGA
1 TAATTAAAGA
98774222 TAATTAAA-A
1 TAATTAAAGA
98774231 TAA
1 TAA
98774234 ATCCTAAAAT
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
9 4 0.18
10 18 0.82
ACGTcount: A:0.62, C:0.00, G:0.06, T:0.31
Consensus pattern (10 bp):
TAATTAAAGA
Found at i:98774254 original size:16 final size:18
Alignment explanation
Indices: 98774221--98774262 Score: 61
Period size: 17 Copynumber: 2.4 Consensus size: 18
98774211 ATAATTAAAG
98774221 ATAATTAAAATAAATCCTA
1 ATAATT-AAATAAATCCTA
98774240 A-AATTAAAT-AATCCTA
1 ATAATTAAATAAATCCTA
98774256 ATAATTA
1 ATAATTA
98774263 TCTTAATATT
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
16 8 0.36
17 9 0.41
18 4 0.18
19 1 0.05
ACGTcount: A:0.57, C:0.10, G:0.00, T:0.33
Consensus pattern (18 bp):
ATAATTAAATAAATCCTA
Found at i:98776045 original size:46 final size:44
Alignment explanation
Indices: 98775941--98776048 Score: 144
Period size: 44 Copynumber: 2.4 Consensus size: 44
98775931 TGTCTTTGAC
** * * *
98775941 ATGGACTTACATGAATTATTCCTGTCTCCAATGCCATATATAAT
1 ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATATATAAT
*
98775985 ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATATTTCTAAT
1 ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATA--TATAAT
98776031 ATGGACTTACATGGCTCA
1 ATGGACTTACATGGCTCA
98776049 TTTCTGTTCT
Statistics
Matches: 56, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
44 33 0.59
46 23 0.41
ACGTcount: A:0.30, C:0.23, G:0.14, T:0.33
Consensus pattern (44 bp):
ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATATATAAT
Found at i:98783395 original size:43 final size:44
Alignment explanation
Indices: 98783316--98783422 Score: 135
Period size: 43 Copynumber: 2.4 Consensus size: 44
98783306 TGTCTTTGAC
* * * *
98783316 ATGGACTTACATGAATTATTCCTGTCTCCAATGCCATA-TATAAT
1 ATGGACTTACATG-CTCAATCCTGTCTCCAAAGCCATATTATAAT
*
98783360 ATGGACTTACATGCTCAATCCTGTCTCCAAAGCCATATTTCTAAT
1 ATGGACTTACATGCTCAATCCTGTCTCCAAAGCCATA-TTATAAT
98783405 ATGGACTTACATGGCTCA
1 ATGGACTTACAT-GCTCA
98783423 TTTCTGTTCT
Statistics
Matches: 55, Mismatches: 5, Indels: 4
0.86 0.08 0.06
Matches are distributed among these distances:
43 20 0.36
44 13 0.24
45 17 0.31
46 5 0.09
ACGTcount: A:0.30, C:0.23, G:0.13, T:0.34
Consensus pattern (44 bp):
ATGGACTTACATGCTCAATCCTGTCTCCAAAGCCATATTATAAT
Found at i:98819805 original size:16 final size:15
Alignment explanation
Indices: 98819776--98819813 Score: 51
Period size: 16 Copynumber: 2.5 Consensus size: 15
98819766 ATAATATTAG
98819776 AAATAAA-ATAAAAT
1 AAATAAACATAAAAT
98819790 AAATAAACAGTAAAAT
1 AAATAAACA-TAAAAT
*
98819806 AAACAAAC
1 AAATAAAC
98819814 GACTAAATAG
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
14 7 0.33
15 1 0.05
16 13 0.62
ACGTcount: A:0.74, C:0.08, G:0.03, T:0.16
Consensus pattern (15 bp):
AAATAAACATAAAAT
Found at i:98825815 original size:41 final size:42
Alignment explanation
Indices: 98825744--98825928 Score: 182
Period size: 42 Copynumber: 4.5 Consensus size: 42
98825734 TAAAATTTGT
* * *
98825744 TAGGC-ATAAAGCCT-AGTATAATACATCGGCA-CAGAGCCTGC
1 TAGGCAATAAA-CCTGA-TATAATACACCGGCATCAAAGCCTAC
* *
98825785 TAGGCAATAAACCTGAGT-TAATGCACCGGCAT-AAAGCCTGC
1 TAGGCAATAAACCTGA-TATAATACACCGGCATCAAAGCCTAC
* * * *
98825826 TAGGTATTAAGCCTGATATCATACACCGGCATCAAAGCCTAC
1 TAGGCAATAAACCTGATATAATACACCGGCATCAAAGCCTAC
* *
98825868 TAGGCAATAAGCCTGATATCATACACCGGCATCAAAGCCTAC
1 TAGGCAATAAACCTGATATAATACACCGGCATCAAAGCCTAC
* * *
98825910 TAGGTAATAAGCTTGATAT
1 TAGGCAATAAACCTGATAT
98825929 TATATCACTG
Statistics
Matches: 126, Mismatches: 13, Indels: 9
0.85 0.09 0.06
Matches are distributed among these distances:
40 1 0.01
41 52 0.41
42 73 0.58
ACGTcount: A:0.35, C:0.24, G:0.19, T:0.22
Consensus pattern (42 bp):
TAGGCAATAAACCTGATATAATACACCGGCATCAAAGCCTAC
Found at i:98825946 original size:42 final size:42
Alignment explanation
Indices: 98825764--98825928 Score: 201
Period size: 42 Copynumber: 4.0 Consensus size: 42
98825754 GCCTAGTATA
* * * * * *
98825764 ATACATCGGCA-CAGAGCCTGCTAGGCAATAAACCTGAGT-TA
1 ATACACCGGCATCAAAGCCTACTAGGTAATAAGCCTGA-TATC
* * *
98825805 ATGCACCGGCAT-AAAGCCTGCTAGGTATTAAGCCTGATATC
1 ATACACCGGCATCAAAGCCTACTAGGTAATAAGCCTGATATC
*
98825846 ATACACCGGCATCAAAGCCTACTAGGCAATAAGCCTGATATC
1 ATACACCGGCATCAAAGCCTACTAGGTAATAAGCCTGATATC
*
98825888 ATACACCGGCATCAAAGCCTACTAGGTAATAAGCTTGATAT
1 ATACACCGGCATCAAAGCCTACTAGGTAATAAGCCTGATAT
98825929 TATATCACTG
Statistics
Matches: 108, Mismatches: 13, Indels: 5
0.86 0.10 0.04
Matches are distributed among these distances:
40 1 0.01
41 42 0.39
42 65 0.60
ACGTcount: A:0.34, C:0.25, G:0.19, T:0.22
Consensus pattern (42 bp):
ATACACCGGCATCAAAGCCTACTAGGTAATAAGCCTGATATC
Found at i:98825946 original size:84 final size:83
Alignment explanation
Indices: 98825764--98825928 Score: 217
Period size: 83 Copynumber: 2.0 Consensus size: 83
98825754 GCCTAGTATA
* * * * *
98825764 ATACATCGGCA-CAGAGCCTGCTAGGCAATAAACCTGAGTTAATGCACCGGCATAAAGCCTGCTA
1 ATACACCGGCATCAAAGCCTACTAGGCAATAAACCTGAGTTAATACACCGGCATAAAGCCTACTA
*
98825828 GGTATTAAGCCTGATATC
66 GGTAATAAGCCTGATATC
* *
98825846 ATACACCGGCATCAAAGCCTACTAGGCAATAAGCCTGA-TATCATACACCGGCATCAAAGCCTAC
1 ATACACCGGCATCAAAGCCTACTAGGCAATAAACCTGAGT-TAATACACCGGCAT-AAAGCCTAC
*
98825910 TAGGTAATAAGCTTGATAT
64 TAGGTAATAAGCCTGATAT
98825929 TATATCACTG
Statistics
Matches: 71, Mismatches: 9, Indels: 4
0.85 0.11 0.05
Matches are distributed among these distances:
82 11 0.15
83 35 0.49
84 25 0.35
ACGTcount: A:0.34, C:0.25, G:0.19, T:0.22
Consensus pattern (83 bp):
ATACACCGGCATCAAAGCCTACTAGGCAATAAACCTGAGTTAATACACCGGCATAAAGCCTACTA
GGTAATAAGCCTGATATC
Found at i:98832814 original size:26 final size:24
Alignment explanation
Indices: 98832787--98832833 Score: 67
Period size: 24 Copynumber: 2.0 Consensus size: 24
98832777 CTTGAGCCAA
*
98832787 AAAAAAGTAAGCTCTATTGAGCTG
1 AAAAAAGTAAGCTCTATTGAGCTC
**
98832811 AAAACGGTAAGCTCTATTGAGCT
1 AAAAAAGTAAGCTCTATTGAGCT
98832834 AAATAGTTCC
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.38, C:0.15, G:0.21, T:0.26
Consensus pattern (24 bp):
AAAAAAGTAAGCTCTATTGAGCTC
Found at i:98840460 original size:24 final size:24
Alignment explanation
Indices: 98840424--98840481 Score: 84
Period size: 24 Copynumber: 2.5 Consensus size: 24
98840414 CTGAGCCAAT
*
98840424 AAACAGTATGCTCTATTGAGTTGA
1 AAACAGTAAGCTCTATTGAGTTGA
*
98840448 AAACGGTAAGCTCTATTGAGTTG-
1 AAACAGTAAGCTCTATTGAGTTGA
98840471 -AACAGTAAGCT
1 AAACAGTAAGCT
98840482 TTTTTGAGCT
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
22 10 0.32
24 21 0.68
ACGTcount: A:0.34, C:0.14, G:0.22, T:0.29
Consensus pattern (24 bp):
AAACAGTAAGCTCTATTGAGTTGA
Found at i:98840481 original size:22 final size:22
Alignment explanation
Indices: 98840425--98840504 Score: 79
Period size: 22 Copynumber: 3.5 Consensus size: 22
98840415 TGAGCCAATA
*
98840425 AACAGTATGCTCTATTGAGTTG
1 AACAGTAAGCTCTATTGAGTTG
*
98840447 AAAACGGTAAGCTCTATTGAGTTG
1 --AACAGTAAGCTCTATTGAGTTG
* * *
98840471 AACAGTAAGCTTTTTTGAGCTG
1 AACAGTAAGCTCTATTGAGTTG
*
98840493 AATCGGTAAGCT
1 AA-CAGTAAGCT
98840505 GCAATGAGCT
Statistics
Matches: 48, Mismatches: 7, Indels: 3
0.83 0.12 0.05
Matches are distributed among these distances:
22 20 0.42
23 8 0.17
24 20 0.42
ACGTcount: A:0.30, C:0.14, G:0.24, T:0.33
Consensus pattern (22 bp):
AACAGTAAGCTCTATTGAGTTG
Found at i:98840489 original size:46 final size:46
Alignment explanation
Indices: 98840424--98840540 Score: 112
Period size: 46 Copynumber: 2.5 Consensus size: 46
98840414 CTGAGCCAAT
* * * * * *
98840424 AAACAGTATGCTCTATTGAGTTGAAAACGGTAAGCT-CTATTGAGTTG
1 AAACAGTAAGCTTTTTTGAGCTG-AAACGGTAAGCTGC-AATGAGCTG
*
98840471 -AACAGTAAGCTTTTTTGAGCTGAATCGGTAAGCTGCAATGAGCTG
1 AAACAGTAAGCTTTTTTGAGCTGAAACGGTAAGCTGCAATGAGCTG
* **
98840516 AAATAGTAAGCTTTTACGAGCTGAA
1 AAACAGTAAGCTTTTTTGAGCTGAA
98840541 TTAGTAAGCT
Statistics
Matches: 58, Mismatches: 10, Indels: 5
0.79 0.14 0.07
Matches are distributed among these distances:
45 18 0.31
46 40 0.69
ACGTcount: A:0.32, C:0.14, G:0.24, T:0.30
Consensus pattern (46 bp):
AAACAGTAAGCTTTTTTGAGCTGAAACGGTAAGCTGCAATGAGCTG
Found at i:98840524 original size:23 final size:23
Alignment explanation
Indices: 98840498--98840561 Score: 67
Period size: 23 Copynumber: 2.8 Consensus size: 23
98840488 AGCTGAATCG
*
98840498 GTAAGCTGCAATGAGCTGAAATA
1 GTAAGCTGCAACGAGCTGAAATA
*** *
98840521 GTAAGCTTTTACGAGCTGAATTA
1 GTAAGCTGCAACGAGCTGAAATA
98840544 GTAAGCT-CATACGAGCTG
1 GTAAGCTGCA-ACGAGCTG
98840562 TGGTGAGTCT
Statistics
Matches: 33, Mismatches: 7, Indels: 2
0.79 0.17 0.05
Matches are distributed among these distances:
23 33 1.00
ACGTcount: A:0.33, C:0.16, G:0.25, T:0.27
Consensus pattern (23 bp):
GTAAGCTGCAACGAGCTGAAATA
Found at i:98840560 original size:46 final size:46
Alignment explanation
Indices: 98840474--98840561 Score: 115
Period size: 46 Copynumber: 1.9 Consensus size: 46
98840464 TGAGTTGAAC
** * *
98840474 AGTAAGCTTTTTTGAGCTGAATCGGTAAGCTGCAATGAGCTGAAAT
1 AGTAAGCTTTTACGAGCTGAATCAGTAAGCTGCAACGAGCTGAAAT
*
98840520 AGTAAGCTTTTACGAGCTGAATTAGTAAGCT-CATACGAGCTG
1 AGTAAGCTTTTACGAGCTGAATCAGTAAGCTGCA-ACGAGCTG
98840562 TGGTGAGTCT
Statistics
Matches: 36, Mismatches: 5, Indels: 2
0.84 0.12 0.05
Matches are distributed among these distances:
45 2 0.06
46 34 0.94
ACGTcount: A:0.31, C:0.15, G:0.25, T:0.30
Consensus pattern (46 bp):
AGTAAGCTTTTACGAGCTGAATCAGTAAGCTGCAACGAGCTGAAAT
Found at i:98843072 original size:12 final size:11
Alignment explanation
Indices: 98843021--98843111 Score: 71
Period size: 11 Copynumber: 8.4 Consensus size: 11
98843011 ATATATAGTG
*
98843021 TATAACATAATT
1 TATAA-ATAATA
* *
98843033 TACAAATAAAA
1 TATAAATAATA
*
98843044 TATATA-AATA
1 TATAAATAATA
*
98843054 TATAAATCATA
1 TATAAATAATA
98843065 TAATAAATAATA
1 T-ATAAATAATA
98843077 TATAAAT-ATA
1 TATAAATAATA
*
98843087 TAT-AATAAAA
1 TATAAATAATA
* *
98843097 TGTATATAATA
1 TATAAATAATA
98843108 TATA
1 TATA
98843112 TAAAAGAAAG
Statistics
Matches: 61, Mismatches: 14, Indels: 9
0.73 0.17 0.11
Matches are distributed among these distances:
9 3 0.05
10 18 0.30
11 26 0.43
12 14 0.23
ACGTcount: A:0.59, C:0.03, G:0.01, T:0.36
Consensus pattern (11 bp):
TATAAATAATA
Found at i:98843080 original size:23 final size:24
Alignment explanation
Indices: 98843050--98843095 Score: 76
Period size: 23 Copynumber: 2.0 Consensus size: 24
98843040 AAAATATATA
98843050 AATATATAAAT-CATATAATAAAT
1 AATATATAAATACATATAATAAAT
*
98843073 AATATATAAATATATATAATAAA
1 AATATATAAATACATATAATAAA
98843096 ATGTATATAA
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
23 11 0.52
24 10 0.48
ACGTcount: A:0.63, C:0.02, G:0.00, T:0.35
Consensus pattern (24 bp):
AATATATAAATACATATAATAAAT
Found at i:98843106 original size:31 final size:31
Alignment explanation
Indices: 98843042--98843111 Score: 88
Period size: 31 Copynumber: 2.3 Consensus size: 31
98843032 TTACAAATAA
* *
98843042 AATATATAAATATATAAATCATATAATAAAT
1 AATATATAAATATATAAATAAAATAATAAAT
* *
98843073 AATATATAAATATATATAATAAAAT-GTATAT
1 AATATATAAATATATA-AATAAAATAATAAAT
98843104 AATATATA
1 AATATATA
98843112 TAAAAGAAAG
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
31 28 0.82
32 6 0.18
ACGTcount: A:0.60, C:0.01, G:0.01, T:0.37
Consensus pattern (31 bp):
AATATATAAATATATAAATAAAATAATAAAT
Found at i:98843108 original size:29 final size:29
Alignment explanation
Indices: 98843037--98843111 Score: 74
Period size: 25 Copynumber: 2.7 Consensus size: 29
98843027 ATAATTTACA
98843037 AATAAAA-TATATAAATATATAAATCATAT
1 AATAAAATTATAT-AATATATAAATCATAT
98843066 AAT-AAA-TA-AT-ATATA-AATAT-ATAT
1 AATAAAATTATATAATATATAA-ATCATAT
98843090 AATAAAATGTATATAATATATA
1 AATAAAAT-TATATAATATATA
98843112 TAAAAGAAAG
Statistics
Matches: 39, Mismatches: 0, Indels: 13
0.75 0.00 0.25
Matches are distributed among these distances:
24 9 0.23
25 10 0.26
27 4 0.10
28 7 0.18
29 8 0.21
30 1 0.03
ACGTcount: A:0.61, C:0.01, G:0.01, T:0.36
Consensus pattern (29 bp):
AATAAAATTATATAATATATAAATCATAT
Found at i:98843111 original size:23 final size:22
Alignment explanation
Indices: 98843050--98843115 Score: 73
Period size: 23 Copynumber: 3.0 Consensus size: 22
98843040 AAAATATATA
98843050 AATATATAAATCATATAATAAAT
1 AATATATAAAT-ATATAATAAAT
*
98843073 AATATATAAATATAT-ATAATAA
1 AATATATAAATATATAATAA-AT
*
98843095 AATGTATATAATATAT-ATAAA
1 AATATATA-AATATATAATAAA
98843116 AGAAAGAAAG
Statistics
Matches: 39, Mismatches: 2, Indels: 5
0.85 0.04 0.11
Matches are distributed among these distances:
21 4 0.10
22 13 0.33
23 22 0.56
ACGTcount: A:0.61, C:0.02, G:0.02, T:0.36
Consensus pattern (22 bp):
AATATATAAATATATAATAAAT
Found at i:98843111 original size:33 final size:31
Alignment explanation
Indices: 98843038--98843115 Score: 86
Period size: 31 Copynumber: 2.5 Consensus size: 31
98843028 TAATTTACAA
* * *
98843038 ATAAAATATATAAATATATAAATCATATAAT
1 ATAATATATATAAATATATAAATAAAATAAT
*
98843069 A-AATAATATATAAATATATATAATAAAATGTAT
1 ATAAT-ATATATAAATATATA-AATAAAAT-AAT
98843102 ATAATATATATAAA
1 ATAATATATATAAA
98843116 AGAAAGAAAG
Statistics
Matches: 39, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
30 2 0.05
31 16 0.41
32 6 0.15
33 12 0.31
34 3 0.08
ACGTcount: A:0.62, C:0.01, G:0.01, T:0.36
Consensus pattern (31 bp):
ATAATATATATAAATATATAAATAAAATAAT
Found at i:98843288 original size:11 final size:11
Alignment explanation
Indices: 98843274--98843310 Score: 51
Period size: 11 Copynumber: 3.5 Consensus size: 11
98843264 AATAAATGAT
98843274 ATATAATAAAA
1 ATATAATAAAA
*
98843285 ATAT-AT-AAC
1 ATATAATAAAA
98843294 ATATAATAAAA
1 ATATAATAAAA
98843305 ATATAA
1 ATATAA
98843311 ATATAACAGA
Statistics
Matches: 22, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
9 6 0.27
10 4 0.18
11 12 0.55
ACGTcount: A:0.68, C:0.03, G:0.00, T:0.30
Consensus pattern (11 bp):
ATATAATAAAA
Found at i:98843362 original size:56 final size:56
Alignment explanation
Indices: 98843253--98843360 Score: 139
Period size: 56 Copynumber: 1.9 Consensus size: 56
98843243 TTACATATAA
** * *
98843253 AAATATAGTAGAATAAATGATATATAATAAAAATATATAACATATAATAAAAATAT
1 AAATATAACAGAATAAATAATATACAATAAAAATATATAACATATAATAAAAATAT
* *
98843309 AAATATAACAGAATAAATAATATACAA-AACAAATATAT-ATATATGATAAAAA
1 AAATATAACAGAATAAATAATATACAATAA-AAATATATAACATATAATAAAAA
98843361 ATGTAATAAT
Statistics
Matches: 45, Mismatches: 6, Indels: 3
0.83 0.11 0.06
Matches are distributed among these distances:
55 14 0.31
56 31 0.69
ACGTcount: A:0.64, C:0.04, G:0.05, T:0.28
Consensus pattern (56 bp):
AAATATAACAGAATAAATAATATACAATAAAAATATATAACATATAATAAAAATAT
Found at i:98845011 original size:78 final size:78
Alignment explanation
Indices: 98844882--98845431 Score: 834
Period size: 78 Copynumber: 7.1 Consensus size: 78
98844872 ATATCTACTA
* * *
98844882 TCTTTGATCTGCTCCCCGTCTAATACAGAAATGCCAAATCATCTTGGATCTGCTTTAATGAAGGT
1 TCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCTTGGATCTGCTTCAATGAAGGT
*
98844947 CTA-ATCTGTTATG
66 C-AGATCTGCTATG
* * ** *
98844960 TCTTTGATCTGCTCCCCATCTAATACAGAGATGCCAAATCATCTTGGATCTGCTTCAAAAAAGTT
1 TCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCTTGGATCTGCTTCAATGAAGGT
* *
98845025 CGGATCTGCTGTG
66 CAGATCTGCTATG
*
98845038 TCTTCGATCTGCTCCCTGTCTAATACAGAGATGCCAAATCATCTTGGATCTGCTTCAATGAAGGT
1 TCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCTTGGATCTGCTTCAATGAAGGT
98845103 CAGATCTGCTATG
66 CAGATCTGCTATG
* *
98845116 TCTTCGACCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCTTGGATCTACTTCAATGAAGGT
1 TCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCTTGGATCTGCTTCAATGAAGGT
98845181 CAGATCTGCTATG
66 CAGATCTGCTATG
* * **
98845194 TCTTCGATCTGCTCTCCGTCGAATATTGAGATGCCAAATCATCTTGGATCTGCTTCAATGAAGGT
1 TCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCTTGGATCTGCTTCAATGAAGGT
98845259 CAGATCTGCTATG
66 CAGATCTGCTATG
* * * *
98845272 TCTTCGATCTGCTCCCCGTCGAATA-TGAAGATGCCAAATTATCTTGGATCTGCTTCAATAAAGG
1 TCTTCGATCTGCTCCCCGTCTAATACAG-AGATGCCAAATCATCTTGGATCTGCTTCAATGAAGG
*
98845336 TCAGATCTGCTGTG
65 TCAGATCTGCTATG
* * *
98845350 TCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAAATCATTTTGGATCTGCTTTAATGAAGGT
1 TCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCTTGGATCTGCTTCAATGAAGGT
98845415 CAGATCTGCTATG
66 CAGATCTGCTATG
98845428 TCTT
1 TCTT
98845432 AACCTGTTAC
Statistics
Matches: 431, Mismatches: 38, Indels: 6
0.91 0.08 0.01
Matches are distributed among these distances:
77 2 0.00
78 428 0.99
79 1 0.00
ACGTcount: A:0.25, C:0.24, G:0.19, T:0.33
Consensus pattern (78 bp):
TCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCTTGGATCTGCTTCAATGAAGGT
CAGATCTGCTATG
Found at i:98845284 original size:37 final size:37
Alignment explanation
Indices: 98845157--98845284 Score: 98
Period size: 37 Copynumber: 3.4 Consensus size: 37
98845147 TGCCAAATCA
* *
98845157 TCTTGGATCTACTTCAATGAAGGTCAGATCTGCTATG
1 TCTTCGATCTGCTTCAATGAAGGTCAGATCTGCTATG
** ** * * *
98845194 TCTTCGATCTGCTCTCCGTCGAATATTGAGA--TGCCAAATCA
1 TCTTCGATCTGCT-TCAAT-GAA-GGTCAGATCTG-C-TAT-G
*
98845235 TCTTGGATCTGCTTCAATGAAGGTCAGATCTGCTATG
1 TCTTCGATCTGCTTCAATGAAGGTCAGATCTGCTATG
98845272 TCTTCGATCTGCT
1 TCTTCGATCTGCT
98845285 CCCCGTCGAA
Statistics
Matches: 65, Mismatches: 18, Indels: 16
0.66 0.18 0.16
Matches are distributed among these distances:
37 23 0.35
38 11 0.17
39 8 0.12
40 11 0.17
41 12 0.18
ACGTcount: A:0.22, C:0.23, G:0.20, T:0.35
Consensus pattern (37 bp):
TCTTCGATCTGCTTCAATGAAGGTCAGATCTGCTATG
Found at i:98857510 original size:12 final size:11
Alignment explanation
Indices: 98857459--98857554 Score: 72
Period size: 11 Copynumber: 8.8 Consensus size: 11
98857449 ATATATAGTG
*
98857459 TATAACATAATT
1 TATAA-ATAATA
* *
98857471 TACAAATAAAA
1 TATAAATAATA
*
98857482 TATATA-AATA
1 TATAAATAATA
*
98857492 TATAAATCATA
1 TATAAATAATA
98857503 TAATAAATAATA
1 T-ATAAATAATA
98857515 TATAAAT-ATA
1 TATAAATAATA
*
98857525 TAT-AATAAAA
1 TATAAATAATA
* *
98857535 TGTATATAATA
1 TATAAATAATA
*
98857546 TATATATAA
1 TATAAATAA
98857555 GAAAGAAAGA
Statistics
Matches: 66, Mismatches: 14, Indels: 9
0.74 0.16 0.10
Matches are distributed among these distances:
9 3 0.05
10 18 0.27
11 31 0.47
12 14 0.21
ACGTcount: A:0.59, C:0.03, G:0.01, T:0.36
Consensus pattern (11 bp):
TATAAATAATA
Found at i:98857518 original size:23 final size:24
Alignment explanation
Indices: 98857488--98857533 Score: 76
Period size: 23 Copynumber: 2.0 Consensus size: 24
98857478 AAAATATATA
98857488 AATATATAAAT-CATATAATAAAT
1 AATATATAAATACATATAATAAAT
*
98857511 AATATATAAATATATATAATAAA
1 AATATATAAATACATATAATAAA
98857534 ATGTATATAA
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
23 11 0.52
24 10 0.48
ACGTcount: A:0.63, C:0.02, G:0.00, T:0.35
Consensus pattern (24 bp):
AATATATAAATACATATAATAAAT
Found at i:98857544 original size:31 final size:31
Alignment explanation
Indices: 98857480--98857549 Score: 88
Period size: 31 Copynumber: 2.3 Consensus size: 31
98857470 TTACAAATAA
* *
98857480 AATATATAAATATATAAATCATATAATAAAT
1 AATATATAAATATATAAATAAAATAATAAAT
* *
98857511 AATATATAAATATATATAATAAAAT-GTATAT
1 AATATATAAATATATA-AATAAAATAATAAAT
98857542 AATATATA
1 AATATATA
98857550 TATAAGAAAG
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
31 28 0.82
32 6 0.18
ACGTcount: A:0.60, C:0.01, G:0.01, T:0.37
Consensus pattern (31 bp):
AATATATAAATATATAAATAAAATAATAAAT
Found at i:98857546 original size:29 final size:28
Alignment explanation
Indices: 98857475--98857553 Score: 71
Period size: 29 Copynumber: 2.9 Consensus size: 28
98857465 ATAATTTACA
98857475 AATAAAA-TATATAAATATATAA-ATCATAT
1 AATAAAATTATAT-AATATA-AATAT-ATAT
98857504 AAT-AAA-TA-AT-ATATAAATATATAT
1 AATAAAATTATATAATATAAATATATAT
*
98857528 AATAAAATGTATATAATATATATATA
1 AATAAAAT-TATATAATATAAATATA
98857554 AGAAAGAAAG
Statistics
Matches: 43, Mismatches: 1, Indels: 12
0.77 0.02 0.21
Matches are distributed among these distances:
24 9 0.21
25 10 0.23
27 4 0.09
28 7 0.16
29 13 0.30
ACGTcount: A:0.61, C:0.01, G:0.01, T:0.37
Consensus pattern (28 bp):
AATAAAATTATATAATATAAATATATAT
Found at i:98857549 original size:23 final size:22
Alignment explanation
Indices: 98857488--98857554 Score: 73
Period size: 23 Copynumber: 2.9 Consensus size: 22
98857478 AAAATATATA
98857488 AATATATAAATCATATAATAAAT
1 AATATATAAAT-ATATAATAAAT
*
98857511 AATATATAAATATAT-ATAATAA
1 AATATATAAATATATAATAA-AT
*
98857533 AATGTATATAATATATATATAA
1 AATATATA-AATATATA-ATAA
98857555 GAAAGAAAGA
Statistics
Matches: 38, Mismatches: 2, Indels: 6
0.83 0.04 0.13
Matches are distributed among these distances:
21 4 0.11
22 12 0.32
23 18 0.47
25 4 0.11
ACGTcount: A:0.60, C:0.01, G:0.01, T:0.37
Consensus pattern (22 bp):
AATATATAAATATATAATAAAT
Found at i:98857596 original size:17 final size:17
Alignment explanation
Indices: 98857576--98857628 Score: 58
Period size: 17 Copynumber: 3.3 Consensus size: 17
98857566 ATTATAATGA
98857576 ATAATATATAATAAAAT
1 ATAATATATAATAAAAT
*
98857593 ATAATATGTAATAAAA-
1 ATAATATATAATAAAAT
* *
98857609 AT-ATGTA-GATAAAAT
1 ATAATATATAATAAAAT
98857624 ATAAT
1 ATAAT
98857629 GAAATATAGT
Statistics
Matches: 30, Mismatches: 4, Indels: 5
0.77 0.10 0.13
Matches are distributed among these distances:
14 6 0.20
15 5 0.17
16 4 0.13
17 15 0.50
ACGTcount: A:0.60, C:0.00, G:0.06, T:0.34
Consensus pattern (17 bp):
ATAATATATAATAAAAT
Found at i:98859254 original size:51 final size:51
Alignment explanation
Indices: 98859173--98859423 Score: 292
Period size: 51 Copynumber: 5.0 Consensus size: 51
98859163 TATTGTGAGG
*
98859173 TCACGTGTGTAGTACTAAGTGCAGGCTACTATGCGTACCTGATAACTTCGA
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATAACTTCGA
* * * *
98859224 TCACATGTGTTGTACTAAGTGCAGGCTACTATGCATACCTGATAACTTCGA
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATAACTTCGA
* * * ** * *
98859275 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGAT-GGTTAGG
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATAACTTCGA
* * * *
98859325 TCATGTGTGTAGTACTAAGTGCAGGCTACTATGTGTACCGGATAA-TT-GG
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATAACTTCGA
* * * * *
98859374 TCGCATGTGTAGTTCTAAGTTCAGGCTACTATGCGTACCAGATAGCTTCG
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATAACTTCG
98859424 GCTACAAGTG
Statistics
Matches: 170, Mismatches: 27, Indels: 6
0.84 0.13 0.03
Matches are distributed among these distances:
49 39 0.23
50 46 0.27
51 85 0.50
ACGTcount: A:0.25, C:0.19, G:0.25, T:0.31
Consensus pattern (51 bp):
TCACGTGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATAACTTCGA
Found at i:98859369 original size:101 final size:100
Alignment explanation
Indices: 98859173--98859417 Score: 285
Period size: 101 Copynumber: 2.4 Consensus size: 100
98859163 TATTGTGAGG
* * * *
98859173 TCACGTGTGTAGTACTAAGTGCAGGCTACTATGCGTACCTGATAACTTCGATCACATGTGTTGTA
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATAACTTAGATCACATGTGTAGTA
*
98859238 CTAAGTGCAGGCTACTATGCATACCTGATAACTTCGA
66 CTAAGTGCAGGCTACTATGCATACCGGATAA-TT-GA
* * ** * **
98859275 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGAT-GGTTAGGTCATGTGTGTAGTA
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATAACTTAGATCACATGTGTAGTA
** *
98859339 CTAAGTGCAGGCTACTATGTGTACCGGATAATTGG
66 CTAAGTGCAGGCTACTATGCATACCGGATAATTGA
* * * * *
98859374 TCGCATGTGTAGTTCTAAGTTCAGGCTACTATGCGTACCAGATA
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATA
98859418 GCTTCGGCTA
Statistics
Matches: 120, Mismatches: 22, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
99 37 0.31
100 2 0.02
101 42 0.35
102 39 0.32
ACGTcount: A:0.25, C:0.19, G:0.25, T:0.31
Consensus pattern (100 bp):
TCACGTGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATAACTTAGATCACATGTGTAGTA
CTAAGTGCAGGCTACTATGCATACCGGATAATTGA
Found at i:98867527 original size:39 final size:39
Alignment explanation
Indices: 98867468--98867654 Score: 286
Period size: 39 Copynumber: 4.8 Consensus size: 39
98867458 AAGACACTGA
* *
98867468 AAATGTATCCGGGCTAAAGTCCCGCAGGCTTTGTGCTGG
1 AAATATATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTGG
98867507 AAATATATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTGG
1 AAATATATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTGG
* *
98867546 AAATATATCCGGGCCAAAGTCCCGCAGGCTTCGTGCTAG
1 AAATATATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTGG
* * *
98867585 AAATGTATCCGGACTAAAGTCCCGCAAGCTTCGTGCTGG
1 AAATATATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTGG
*
98867624 AAA-AGTATCCGGGCCAAAGTCCCGCAGGCTT
1 AAATA-TATCCGGGCTAAAGTCCCGCAGGCTT
98867655 TGTATCATCC
Statistics
Matches: 134, Mismatches: 13, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
39 134 1.00
ACGTcount: A:0.25, C:0.26, G:0.27, T:0.22
Consensus pattern (39 bp):
AAATATATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTGG
Found at i:98878541 original size:39 final size:39
Alignment explanation
Indices: 98878487--98878578 Score: 148
Period size: 39 Copynumber: 2.4 Consensus size: 39
98878477 TGGGGTGTTA
*
98878487 CAGGCTTCGTGCTGGAAATGTATCCGGGCCAAAGTCTCG
1 CAGGCTTCGTGCTGGAAATGTATCCGGGCCAAAGTCCCG
**
98878526 CAGGCTTCGTGCTGGAAATGTATCCGGGTTAAAGTCCCG
1 CAGGCTTCGTGCTGGAAATGTATCCGGGCCAAAGTCCCG
*
98878565 CAGGCTTTGTGCTG
1 CAGGCTTCGTGCTG
98878579 ATAATATTAT
Statistics
Matches: 49, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
39 49 1.00
ACGTcount: A:0.18, C:0.24, G:0.32, T:0.26
Consensus pattern (39 bp):
CAGGCTTCGTGCTGGAAATGTATCCGGGCCAAAGTCCCG
Found at i:98883263 original size:5 final size:5
Alignment explanation
Indices: 98883253--98883280 Score: 56
Period size: 5 Copynumber: 5.6 Consensus size: 5
98883243 TGATGCCAAC
98883253 AATAA AATAA AATAA AATAA AATAA AAT
1 AATAA AATAA AATAA AATAA AATAA AAT
98883281 TTTATTTTGG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 23 1.00
ACGTcount: A:0.79, C:0.00, G:0.00, T:0.21
Consensus pattern (5 bp):
AATAA
Found at i:98889054 original size:28 final size:28
Alignment explanation
Indices: 98889014--98889096 Score: 118
Period size: 28 Copynumber: 3.0 Consensus size: 28
98889004 GAAAAAAGCG
98889014 TAAAAGTATAATTTTTAGTACCCAAGGA
1 TAAAAGTATAATTTTTAGTACCCAAGGA
98889042 TAAAAGTATAATTTTTAGTACCCAA-GA
1 TAAAAGTATAATTTTTAGTACCCAAGGA
**
98889069 T--GTGTAATAATTTTTAGTACCCAAGGA
1 TAAAAGT-ATAATTTTTAGTACCCAAGGA
98889096 T
1 T
98889097 GTGTACCAAG
Statistics
Matches: 51, Mismatches: 2, Indels: 5
0.88 0.03 0.09
Matches are distributed among these distances:
25 2 0.04
26 18 0.35
27 6 0.12
28 25 0.49
ACGTcount: A:0.40, C:0.11, G:0.14, T:0.35
Consensus pattern (28 bp):
TAAAAGTATAATTTTTAGTACCCAAGGA
Found at i:98889085 original size:26 final size:27
Alignment explanation
Indices: 98889021--98889101 Score: 112
Period size: 26 Copynumber: 3.0 Consensus size: 27
98889011 GCGTAAAAGT
**
98889021 ATAATTTTTAGTACCCAAGGATAAAAGT-
1 ATAATTTTTAGTACCCAAGGAT--GTGTA
98889049 ATAATTTTTAGTACCCAA-GATGTGTA
1 ATAATTTTTAGTACCCAAGGATGTGTA
98889075 ATAATTTTTAGTACCCAAGGATGTGTA
1 ATAATTTTTAGTACCCAAGGATGTGTA
98889102 CCAAGTATTA
Statistics
Matches: 49, Mismatches: 2, Indels: 5
0.88 0.04 0.09
Matches are distributed among these distances:
25 2 0.04
26 18 0.37
27 11 0.22
28 18 0.37
ACGTcount: A:0.37, C:0.11, G:0.16, T:0.36
Consensus pattern (27 bp):
ATAATTTTTAGTACCCAAGGATGTGTA
Found at i:98889491 original size:3 final size:3
Alignment explanation
Indices: 98889485--98889537 Score: 97
Period size: 3 Copynumber: 17.7 Consensus size: 3
98889475 AATAATAATA
*
98889485 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ACT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
98889533 ATT AT
1 ATT AT
98889538 ATACGAGATG
Statistics
Matches: 48, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
3 48 1.00
ACGTcount: A:0.34, C:0.02, G:0.00, T:0.64
Consensus pattern (3 bp):
ATT
Found at i:98891323 original size:124 final size:124
Alignment explanation
Indices: 98891103--98891346 Score: 344
Period size: 124 Copynumber: 2.0 Consensus size: 124
98891093 CCATGGCCCA
* *
98891103 AAGCCAAATCAAGGTGATTTATATCTAAAACACTGATATAATGGCCTAAAGCCAAATCAGCCGAT
1 AAGCCAAATCAAGGTAATTTATATCTAAAACACTGATATAATGGCCCAAAGCCAAATCAGCCGAT
* * **
98891168 ATTCATGGCCCAAATCCAAATCGGTATAACTCACACCCGAAGTGAAAATATCATGTCCG
66 ATTCATCGCCCAAAGCCAAATCCATATAACTCACACCCGAAGTGAAAATATCATGTCCG
* * * * *
98891227 AAGCCAAATCAAGGTAATTTATATCTGAAATACTGATATCATGGCCCAAAGCCAAATTAGTCGAT
1 AAGCCAAATCAAGGTAATTTATATCTAAAACACTGATATAATGGCCCAAAGCCAAATCAGCCGAT
* ** * *
98891292 ATTCATCGCTCGGAGCCAAATCCATATAACTCACACCTGAAGTGCAAATATCATG
66 ATTCATCGCCCAAAGCCAAATCCATATAACTCACACCCGAAGTGAAAATATCATG
98891347 GCCTGAAGGG
Statistics
Matches: 104, Mismatches: 16, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
124 104 1.00
ACGTcount: A:0.38, C:0.23, G:0.15, T:0.24
Consensus pattern (124 bp):
AAGCCAAATCAAGGTAATTTATATCTAAAACACTGATATAATGGCCCAAAGCCAAATCAGCCGAT
ATTCATCGCCCAAAGCCAAATCCATATAACTCACACCCGAAGTGAAAATATCATGTCCG
Found at i:98892293 original size:13 final size:13
Alignment explanation
Indices: 98892277--98892303 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
98892267 CTATGTACAT
98892277 AAATGTCCAATCA
1 AAATGTCCAATCA
98892290 AAATGTCCAATCA
1 AAATGTCCAATCA
98892303 A
1 A
98892304 CTAAAAAATG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.48, C:0.22, G:0.07, T:0.22
Consensus pattern (13 bp):
AAATGTCCAATCA
Found at i:98893651 original size:23 final size:24
Alignment explanation
Indices: 98893497--98893689 Score: 257
Period size: 25 Copynumber: 8.0 Consensus size: 24
98893487 GCTTTATCAT
*
98893497 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
* *
98893522 ATAACTGGGGCAAAAGCCCTTTTT
1 ATAACTGGGGCATAAGCCCTTTTA
*
98893546 ATAACTGGGGCATAAGCCCTTTATC
1 ATAACTGGGGCATAAGCCCTTT-TA
* *
98893571 ATAACTGGGGCATAAGCCCTTCATC
1 ATAACTGGGGCATAAGCCCTT-TTA
*
98893596 ATAACTGGGGCATAAGCCCTTTATC
1 ATAACTGGGGCATAAGCCCTTT-TA
98893621 ATAACTGGGGCATAAG-CCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
98893644 ATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
98893667 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
98893690 GCACTTCCTC
Statistics
Matches: 154, Mismatches: 8, Indels: 13
0.88 0.05 0.07
Matches are distributed among these distances:
23 40 0.26
24 39 0.25
25 75 0.49
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:98893761 original size:9 final size:9
Alignment explanation
Indices: 98893747--98893803 Score: 51
Period size: 9 Copynumber: 5.9 Consensus size: 9
98893737 ATCTCATGTG
98893747 CATATCATA
1 CATATCATA
*
98893756 CATATCATGTG
1 CATATCA--TA
98893767 CATATCATA
1 CATATCATA
* *
98893776 CATGTCATGTG
1 CATATCA--TA
98893787 CATATCATA
1 CATATCATA
98893796 CATATCAT
1 CATATCAT
98893804 GTTTATCAAA
Statistics
Matches: 38, Mismatches: 6, Indels: 8
0.73 0.12 0.15
Matches are distributed among these distances:
9 23 0.61
11 15 0.39
ACGTcount: A:0.35, C:0.21, G:0.09, T:0.35
Consensus pattern (9 bp):
CATATCATA
Found at i:98893763 original size:20 final size:20
Alignment explanation
Indices: 98893735--98893805 Score: 124
Period size: 20 Copynumber: 3.5 Consensus size: 20
98893725 GCATTTACAA
*
98893735 ACATCTCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
98893755 ACATATCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
*
98893775 ACATGTCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
98893795 ACATATCATGT
1 ACATATCATGT
98893806 TTATCAAAAT
Statistics
Matches: 48, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 48 1.00
ACGTcount: A:0.32, C:0.21, G:0.11, T:0.35
Consensus pattern (20 bp):
ACATATCATGTGCATATCAT
Found at i:98893770 original size:11 final size:11
Alignment explanation
Indices: 98893740--98893794 Score: 55
Period size: 11 Copynumber: 5.4 Consensus size: 11
98893730 TACAAACATC
98893740 TCATGTGCATA
1 TCATGTGCATA
*
98893751 TCA--TACATA
1 TCATGTGCATA
98893760 TCATGTGCATA
1 TCATGTGCATA
* *
98893771 TCA--TACATG
1 TCATGTGCATA
98893780 TCATGTGCATA
1 TCATGTGCATA
98893791 TCAT
1 TCAT
98893795 ACATATCATG
Statistics
Matches: 34, Mismatches: 6, Indels: 8
0.71 0.12 0.17
Matches are distributed among these distances:
9 15 0.44
11 19 0.56
ACGTcount: A:0.31, C:0.20, G:0.13, T:0.36
Consensus pattern (11 bp):
TCATGTGCATA
Found at i:98893870 original size:25 final size:25
Alignment explanation
Indices: 98893842--98893889 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
98893832 ATATATAAAC
* * *
98893842 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
98893867 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
98893890 CATATTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:98895109 original size:27 final size:27
Alignment explanation
Indices: 98895047--98895124 Score: 88
Period size: 27 Copynumber: 2.9 Consensus size: 27
98895037 GGGCATATTC
98895047 GTCATTTTACCATACAGGGGTATTACG
1 GTCATTTTACCATACAGGGGTATTACG
* *
98895074 GTCACTTTACCCTACAGGGGCT-TTACG
1 GTCATTTTACCATACAGGGG-TATTACG
* *
98895101 GTCTTTTTACC-TAATAGGGGTATT
1 GTCATTTTACCAT-ACAGGGGTATT
98895125 TTAGTTATTT
Statistics
Matches: 43, Mismatches: 5, Indels: 6
0.80 0.09 0.11
Matches are distributed among these distances:
26 2 0.05
27 40 0.93
28 1 0.02
ACGTcount: A:0.22, C:0.21, G:0.22, T:0.36
Consensus pattern (27 bp):
GTCATTTTACCATACAGGGGTATTACG
Found at i:98895195 original size:27 final size:27
Alignment explanation
Indices: 98895143--98895353 Score: 151
Period size: 27 Copynumber: 7.7 Consensus size: 27
98895133 TTCATCCTAC
* * * *
98895143 AAGGGTGTTTTGGTAAATCTACAAACT
1 AAGGGTATTTTAGTAATTTTACAAACT
* *
98895170 AAGGGTATTTTAGTAATTTTATAAACC
1 AAGGGTATTTTAGTAATTTTACAAACT
** * *
98895197 AATAGTATTTCTA-TAATTTTTAGAAAGT
1 AAGGGTATTT-TAGTAA-TTTTACAAACT
* *
98895225 CAAGGGTATTTTTGTAACTTTGTA-AATC-
1 -AAGGGTATTTTAGTAA-TTT-TACAAACT
* *
98895253 AGGGGTATTTTAATAATTTTACAAA-T
1 AAGGGTATTTTAGTAATTTTACAAACT
* ** * *
98895279 CGAGGGTATTTCGGTAATTTCACAAACC
1 -AAGGGTATTTTAGTAATTTTACAAACT
*
98895307 AAGGGTATTTTGGTAATTTTACAAACT
1 AAGGGTATTTTAGTAATTTTACAAACT
*
98895334 AAGAGTATTTTAGTAATTTT
1 AAGGGTATTTTAGTAATTTT
98895354 GTAAATCGAG
Statistics
Matches: 141, Mismatches: 34, Indels: 18
0.73 0.18 0.09
Matches are distributed among these distances:
25 2 0.01
26 5 0.04
27 105 0.74
28 11 0.08
29 16 0.11
30 2 0.01
ACGTcount: A:0.34, C:0.09, G:0.17, T:0.40
Consensus pattern (27 bp):
AAGGGTATTTTAGTAATTTTACAAACT
Found at i:98895366 original size:54 final size:55
Alignment explanation
Indices: 98895142--98895367 Score: 190
Period size: 54 Copynumber: 4.1 Consensus size: 55
98895132 TTTCATCCTA
* * * *
98895142 CAAGGGTGTTTTGGTAAATCTACAAACT-AAGGGTATTTTAGTAATTTTATAAAC
1 CAAGGGTATTTTGATAATTTTACAAACTCAAGGGTATTTTAGTAATTTTATAAAC
** * * * * * *
98895196 CAATAGTATTTCT-ATAATTTTTAGAAAGTCAAGGGTATTTTTGTAACTTTGTAAAT
1 CAAGGGTATTT-TGATAA-TTTTACAAACTCAAGGGTATTTTAGTAATTTTATAAAC
* * * ** * *
98895252 CAGGGGTATTTTAATAATTTTACAAA-TCGAGGGTATTTCGGTAATTTCACAAAC
1 CAAGGGTATTTTGATAATTTTACAAACTCAAGGGTATTTTAGTAATTTTATAAAC
* * * *
98895306 CAAGGGTATTTTGGTAATTTTACAAACT-AAGAGTATTTTAGTAATTTTGTAAAT
1 CAAGGGTATTTTGATAATTTTACAAACTCAAGGGTATTTTAGTAATTTTATAAAC
*
98895360 CGAGGGTA
1 CAAGGGTA
98895368 AAACAGTAAT
Statistics
Matches: 131, Mismatches: 36, Indels: 10
0.74 0.20 0.06
Matches are distributed among these distances:
54 79 0.60
55 18 0.14
56 34 0.26
ACGTcount: A:0.34, C:0.09, G:0.18, T:0.39
Consensus pattern (55 bp):
CAAGGGTATTTTGATAATTTTACAAACTCAAGGGTATTTTAGTAATTTTATAAAC
Found at i:98895391 original size:81 final size:80
Alignment explanation
Indices: 98895142--98895394 Score: 224
Period size: 81 Copynumber: 3.1 Consensus size: 80
98895132 TTTCATCCTA
* * * * * **
98895142 CAAGGGTGTTTTGGTAAATCTACAAACTAAGGGTATTTTAGTAATTTTATAAACCAATAGTATTT
1 CAAGGGTATTTTGGTAATTTTACAAACTAAGGGTATTTTAGTAATTTTATAAATCGAGGGTATTT
*
98895207 CTA-TAATTTTTAGAAAGT
66 C-AGTAA--TTTACAAA-T
* * * * *
98895225 CAAGGGTATTTTTGTAACTTTGTA-AATC-AGGGGTATTTTAATAATTTTACAAATCGAGGGTAT
1 CAAGGGTATTTTGGTAA-TTT-TACAAACTAAGGGTATTTTAGTAATTTTATAAATCGAGGGTAT
* *
98895288 TTCGGTAATTTCACAAAC
64 TTCAGTAATTT-ACAAAT
* * ***
98895306 CAAGGGTATTTTGGTAATTTTACAAACTAAGAGTATTTTAGTAATTTTGTAAATCGAGGGTAAAA
1 CAAGGGTATTTTGGTAATTTTACAAACTAAGGGTATTTTAGTAATTTTATAAATCGAGGGTATTT
*
98895371 CAGTAATTCTATAAAT
66 CAGTAATT-TACAAAT
98895387 CAAGGGTA
1 CAAGGGTA
98895395 AAATAGTAGT
Statistics
Matches: 135, Mismatches: 28, Indels: 16
0.75 0.16 0.09
Matches are distributed among these distances:
79 2 0.01
80 6 0.04
81 67 0.50
82 5 0.04
83 49 0.36
84 4 0.03
85 2 0.01
ACGTcount: A:0.36, C:0.09, G:0.18, T:0.38
Consensus pattern (80 bp):
CAAGGGTATTTTGGTAATTTTACAAACTAAGGGTATTTTAGTAATTTTATAAATCGAGGGTATTT
CAGTAATTTACAAAT
Found at i:98895556 original size:27 final size:27
Alignment explanation
Indices: 98895346--98895549 Score: 246
Period size: 27 Copynumber: 7.6 Consensus size: 27
98895336 GAGTATTTTA
* * * *
98895346 GTAATTTTGTAAATCGAGGGTAAAACA
1 GTAATTCTATAAATCAAGGGTAAAACG
**
98895373 GTAATTCTATAAATCAAGGGTAAAATA
1 GTAATTCTATAAATCAAGGGTAAAACG
* * * *
98895400 GTAGTTTTGTAAATCGAGGGTAAAACG
1 GTAATTCTATAAATCAAGGGTAAAACG
98895427 GTAATTCTATAAATCAAGGGTAAAACG
1 GTAATTCTATAAATCAAGGGTAAAACG
* *
98895454 GTAATTCTATAAGTCTAGGGTAAAACG
1 GTAATTCTATAAATCAAGGGTAAAACG
* * *
98895481 ATAATTATGTAAATCAAGGGTAAAACG
1 GTAATTCTATAAATCAAGGGTAAAACG
* * *
98895508 GTAATTATGTAAATCAGGGGTAAAACG
1 GTAATTCTATAAATCAAGGGTAAAACG
98895535 GTAATTCTATAAATC
1 GTAATTCTATAAATC
98895550 GGGGGTACTT
Statistics
Matches: 152, Mismatches: 25, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 152 1.00
ACGTcount: A:0.42, C:0.09, G:0.21, T:0.29
Consensus pattern (27 bp):
GTAATTCTATAAATCAAGGGTAAAACG
Found at i:98895556 original size:81 final size:81
Alignment explanation
Indices: 98895346--98895549 Score: 277
Period size: 81 Copynumber: 2.5 Consensus size: 81
98895336 GAGTATTTTA
* * * * *
98895346 GTAATTTTGTAAATC-GAGGGTAAAACAGTAATTCTATAAATCAAGGGTAAAATAGTAGTTTTGT
1 GTAATTATGTAAATCAG-GGGTAAAACGGTAATTCTATAAATCAAGGGTAAAAGAGTAATTATGT
*
98895410 AAATCGAGGGTAAAACG
65 AAATCAAGGGTAAAACG
* * * * *
98895427 GTAATTCTATAAATCAAGGGTAAAACGGTAATTCTATAAGTCTAGGGTAAAACGA-TAATTATGT
1 GTAATTATGTAAATCAGGGGTAAAACGGTAATTCTATAAATCAAGGGTAAAA-GAGTAATTATGT
98895491 AAATCAAGGGTAAAACG
65 AAATCAAGGGTAAAACG
98895508 GTAATTATGTAAATCAGGGGTAAAACGGTAATTCTATAAATC
1 GTAATTATGTAAATCAGGGGTAAAACGGTAATTCTATAAATC
98895550 GGGGGTACTT
Statistics
Matches: 107, Mismatches: 14, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
81 106 0.99
82 1 0.01
ACGTcount: A:0.42, C:0.09, G:0.21, T:0.29
Consensus pattern (81 bp):
GTAATTATGTAAATCAGGGGTAAAACGGTAATTCTATAAATCAAGGGTAAAAGAGTAATTATGTA
AATCAAGGGTAAAACG
Found at i:98895567 original size:54 final size:54
Alignment explanation
Indices: 98895346--98895549 Score: 284
Period size: 54 Copynumber: 3.8 Consensus size: 54
98895336 GAGTATTTTA
* **
98895346 GTAATTTTGTAAATCGAGGGTAAAACAGTAATTCTATAAATCAAGGGTAAAATA
1 GTAATTTTGTAAATCGAGGGTAAAACGGTAATTCTATAAATCAAGGGTAAAACG
*
98895400 GTAGTTTTGTAAATCGAGGGTAAAACGGTAATTCTATAAATCAAGGGTAAAACG
1 GTAATTTTGTAAATCGAGGGTAAAACGGTAATTCTATAAATCAAGGGTAAAACG
* * * * * * *
98895454 GTAATTCTATAAGTCTAGGGTAAAACGATAATTATGTAAATCAAGGGTAAAACG
1 GTAATTTTGTAAATCGAGGGTAAAACGGTAATTCTATAAATCAAGGGTAAAACG
*
98895508 GTAATTATGTAAATC-AGGGGTAAAACGGTAATTCTATAAATC
1 GTAATTTTGTAAATCGA-GGGTAAAACGGTAATTCTATAAATC
98895550 GGGGGTACTT
Statistics
Matches: 131, Mismatches: 18, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
53 1 0.01
54 130 0.99
ACGTcount: A:0.42, C:0.09, G:0.21, T:0.29
Consensus pattern (54 bp):
GTAATTTTGTAAATCGAGGGTAAAACGGTAATTCTATAAATCAAGGGTAAAACG
Found at i:98895583 original size:27 final size:27
Alignment explanation
Indices: 98895535--98895651 Score: 112
Period size: 27 Copynumber: 4.3 Consensus size: 27
98895525 GGGTAAAACG
* * ** * *
98895535 GTAATTCTATAAATCGGGGGTACTTCG
1 GTAATTTTACAAATCGAAGGTATTTCA
*
98895562 GTAATTTTACAAGTCGAAGGTATTTCA
1 GTAATTTTACAAATCGAAGGTATTTCA
*
98895589 GTAATTTTACAAATCGAGGGTATTTCA
1 GTAATTTTACAAATCGAAGGTATTTCA
* *
98895616 GTATTTTTACAAA-CTAAGCGTATTTC-
1 GTAATTTTACAAATCGAAG-GTATTTCA
98895642 GATAATTTTA
1 G-TAATTTTA
98895652 GTAAACTAAA
Statistics
Matches: 75, Mismatches: 13, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
26 4 0.05
27 71 0.95
ACGTcount: A:0.32, C:0.12, G:0.18, T:0.38
Consensus pattern (27 bp):
GTAATTTTACAAATCGAAGGTATTTCA
Found at i:98895639 original size:54 final size:53
Alignment explanation
Indices: 98895535--98895651 Score: 128
Period size: 54 Copynumber: 2.2 Consensus size: 53
98895525 GGGTAAAACG
* * * * *
98895535 GTAATTCTATAAATCGGGGGTACTTCGGTAATTTTACAAGTCGAAGGTATTTC
1 GTAATTTTACAAATCGAGGGTACTTCAGTAATTTTACAAGACGAAGGTATTTC
* * *
98895588 AGTAATTTTACAAATCGAGGGTATTTCAGTATTTTTACAA-ACTAAGCGTATTTC
1 -GTAATTTTACAAATCGAGGGTACTTCAGTAATTTTACAAGACGAAG-GTATTTC
98895642 GATAATTTTA
1 G-TAATTTTA
98895652 GTAAACTAAA
Statistics
Matches: 53, Mismatches: 8, Indels: 4
0.82 0.12 0.06
Matches are distributed among these distances:
53 5 0.09
54 48 0.91
ACGTcount: A:0.32, C:0.12, G:0.18, T:0.38
Consensus pattern (53 bp):
GTAATTTTACAAATCGAGGGTACTTCAGTAATTTTACAAGACGAAGGTATTTC
Found at i:98909133 original size:20 final size:18
Alignment explanation
Indices: 98909108--98909154 Score: 51
Period size: 17 Copynumber: 2.6 Consensus size: 18
98909098 TATATTTTAG
98909108 GTATGTGTGAAATCTTGATT
1 GTATGTGTGAAATCTT--TT
* *
98909128 GTATGTG-CAAATGTTTT
1 GTATGTGTGAAATCTTTT
98909145 GTATGTGTGA
1 GTATGTGTGA
98909155 GCATGTTTAG
Statistics
Matches: 23, Mismatches: 3, Indels: 4
0.77 0.10 0.13
Matches are distributed among these distances:
17 9 0.39
18 1 0.04
19 6 0.26
20 7 0.30
ACGTcount: A:0.23, C:0.04, G:0.28, T:0.45
Consensus pattern (18 bp):
GTATGTGTGAAATCTTTT
Found at i:98909850 original size:19 final size:19
Alignment explanation
Indices: 98909826--98909865 Score: 55
Period size: 19 Copynumber: 2.1 Consensus size: 19
98909816 ATTAATTTTG
98909826 ATCAAGTAAAATTA-AATTA
1 ATCAAGT-AAATTACAATTA
*
98909845 ATCAAGTCAATTACAATTA
1 ATCAAGTAAATTACAATTA
98909864 AT
1 AT
98909866 ATGATATTTT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
18 5 0.26
19 14 0.74
ACGTcount: A:0.53, C:0.10, G:0.05, T:0.33
Consensus pattern (19 bp):
ATCAAGTAAATTACAATTA
Found at i:98910362 original size:68 final size:69
Alignment explanation
Indices: 98910281--98910415 Score: 173
Period size: 68 Copynumber: 2.0 Consensus size: 69
98910271 TTTTAATAGT
* * * * ** * *
98910281 TTAATATTGAATTTAATTTAATACTTATCTTAAT-AGTATTTTTTTAATTTAATATTGAAGTGAT
1 TTAATATTAAATTTAATCTAATACTTATCTTAATAAATATTATAGTAAATTAATATTAAAGTGAT
98910345 TATC
66 TATC
* *
98910349 TTAATATTAAATTTAATCTAATATTTATCTTGATAAATATTATAGTAAATTAATATTAAAGTGAT
1 TTAATATTAAATTTAATCTAATACTTATCTTAATAAATATTATAGTAAATTAATATTAAAGTGAT
98910414 TA
66 TA
98910416 AGTTTAATTA
Statistics
Matches: 56, Mismatches: 10, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
68 30 0.54
69 26 0.46
ACGTcount: A:0.40, C:0.04, G:0.07, T:0.50
Consensus pattern (69 bp):
TTAATATTAAATTTAATCTAATACTTATCTTAATAAATATTATAGTAAATTAATATTAAAGTGAT
TATC
Found at i:98923668 original size:40 final size:40
Alignment explanation
Indices: 98923574--98923718 Score: 193
Period size: 40 Copynumber: 3.6 Consensus size: 40
98923564 TACTCGAATG
*
98923574 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGCGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCT-AGCGACT
* *
98923615 ACATCCGGACTAAGAT-CCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAG-TCCCGAAGGCATTTGTGCTAGCGACT
* * *
98923655 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGCGACT
* *
98923695 ATATCCGGGTTAAGACCCGAAGGC
1 ATATCCGGGCTAAGTCCCGAAGGC
98923719 CTTGTGCGAG
Statistics
Matches: 92, Mismatches: 10, Indels: 5
0.86 0.09 0.05
Matches are distributed among these distances:
39 1 0.01
40 62 0.67
41 28 0.30
42 1 0.01
ACGTcount: A:0.26, C:0.25, G:0.26, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGCGACT
Found at i:98926339 original size:48 final size:48
Alignment explanation
Indices: 98926186--98926343 Score: 124
Period size: 48 Copynumber: 3.3 Consensus size: 48
98926176 AAGGGTAAAT
* * * * **
98926186 TGCCGATGCCATGTCCCAGACATGGTCTTACAGTGGCTCAT-ATGTTGA
1 TGCCGATGCCATGTCCCAGACATGGCCTTACACTAGCTC-TCATATCAA
* ** * * *
98926234 GGTAGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCGTCTCAA
1 TGCCGATGCCATGTCCCAGACATGGCCTTACACTAGCTCTCATATCAA
* ** *
98926282 TGCCAATGCCATGTCCTGGACATGGCCTTACTCTAGCTCTCATA--ATA
1 TGCCGATGCCATGTCCCAGACATGGCCTTACACTAGCTCTCATATCA-A
98926329 TAGCCGATGCCATGT
1 T-GCCGATGCCATGT
98926344 TCGGATCTCA
Statistics
Matches: 87, Mismatches: 20, Indels: 6
0.77 0.18 0.05
Matches are distributed among these distances:
46 1 0.01
47 3 0.03
48 83 0.95
ACGTcount: A:0.22, C:0.28, G:0.22, T:0.28
Consensus pattern (48 bp):
TGCCGATGCCATGTCCCAGACATGGCCTTACACTAGCTCTCATATCAA
Found at i:98926355 original size:30 final size:30
Alignment explanation
Indices: 98926319--98926375 Score: 87
Period size: 30 Copynumber: 1.9 Consensus size: 30
98926309 TTACTCTAGC
*
98926319 TCTCATAATATAGCCGATGCCATGTTCGGA
1 TCTCATAATATAGCCAATGCCATGTTCGGA
* *
98926349 TCTCATAATGTCGCCAATGCCATGTTC
1 TCTCATAATATAGCCAATGCCATGTTC
98926376 CAAATATGGT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.25, C:0.26, G:0.18, T:0.32
Consensus pattern (30 bp):
TCTCATAATATAGCCAATGCCATGTTCGGA
Found at i:98931547 original size:49 final size:49
Alignment explanation
Indices: 98931439--98931571 Score: 162
Period size: 49 Copynumber: 2.7 Consensus size: 49
98931429 TCACATCTAA
* * *
98931439 GTCGATGCCATGTCCCAAACAGGCCTTACACTAACTTTCATATATCGAG
1 GTCGATGCCATGTCCCAGACAGGTCTTACACTAACTCTCATATATCGAG
* * * *
98931488 GCCGAAGCCATGTCCCAGACAGGTCTTACACTAGCTCTCGCT-TATC-AG
1 GTCGATGCCATGTCCCAGACAGGTCTTACACTAACTCTC-ATATATCGAG
*
98931536 TGTCGATGCCATGTCCTAGACAGGTCTTACACTAAC
1 -GTCGATGCCATGTCCCAGACAGGTCTTACACTAAC
98931572 ACACCTCAAT
Statistics
Matches: 71, Mismatches: 11, Indels: 4
0.83 0.13 0.05
Matches are distributed among these distances:
48 2 0.03
49 68 0.96
50 1 0.01
ACGTcount: A:0.26, C:0.30, G:0.19, T:0.26
Consensus pattern (49 bp):
GTCGATGCCATGTCCCAGACAGGTCTTACACTAACTCTCATATATCGAG
Found at i:98945721 original size:21 final size:21
Alignment explanation
Indices: 98945684--98945746 Score: 74
Period size: 21 Copynumber: 3.0 Consensus size: 21
98945674 TGATTAGAAT
*
98945684 ACGACACATAA-GTGCCTGAA
1 ACGACACACAAGGTGCCTGAA
* **
98945704 ACGACACACGAGGTGCCTGCT
1 ACGACACACAAGGTGCCTGAA
*
98945725 GCGACACACAAGGTGCCTGAA
1 ACGACACACAAGGTGCCTGAA
98945746 A
1 A
98945747 TACGATACAT
Statistics
Matches: 33, Mismatches: 9, Indels: 1
0.77 0.21 0.02
Matches are distributed among these distances:
20 9 0.27
21 24 0.73
ACGTcount: A:0.33, C:0.29, G:0.25, T:0.13
Consensus pattern (21 bp):
ACGACACACAAGGTGCCTGAA
Found at i:98946054 original size:29 final size:28
Alignment explanation
Indices: 98945972--98946055 Score: 132
Period size: 28 Copynumber: 3.0 Consensus size: 28
98945962 AACACACCAG
* *
98945972 TATAATCCTCCAAAACACACCAGTATCA
1 TATAATCCTCCAAAACACACCAGAATAA
*
98946000 TATAATCCTCCCAAACACACCAGAATAA
1 TATAATCCTCCAAAACACACCAGAATAA
98946028 TATAATCCATCCAAAACACACCAGAATA
1 TATAATCC-TCCAAAACACACCAGAATA
98946056 GCATAAAGTG
Statistics
Matches: 51, Mismatches: 4, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
28 33 0.65
29 18 0.35
ACGTcount: A:0.46, C:0.31, G:0.04, T:0.19
Consensus pattern (28 bp):
TATAATCCTCCAAAACACACCAGAATAA
Found at i:98946061 original size:29 final size:27
Alignment explanation
Indices: 98945958--98946055 Score: 123
Period size: 28 Copynumber: 3.7 Consensus size: 27
98945948 AAATGTCCAA
98945958 CCAAAACACACCAG----TATAATCCT
1 CCAAAACACACCAGAATATATAATCCT
*
98945981 CCAAAACACACCAGTATCATATAATCCT
1 CCAAAACACACCAGAAT-ATATAATCCT
*
98946009 CCCAAACACACCAGAATAATATAATCCAT
1 CCAAAACACACCAGAAT-ATATAATCC-T
98946038 CCAAAACACACCAGAATA
1 CCAAAACACACCAGAATA
98946056 GCATAAAGTG
Statistics
Matches: 65, Mismatches: 4, Indels: 7
0.86 0.05 0.09
Matches are distributed among these distances:
23 14 0.22
28 34 0.52
29 17 0.26
ACGTcount: A:0.47, C:0.33, G:0.04, T:0.16
Consensus pattern (27 bp):
CCAAAACACACCAGAATATATAATCCT
Found at i:98956006 original size:101 final size:100
Alignment explanation
Indices: 98955827--98956008 Score: 240
Period size: 101 Copynumber: 1.8 Consensus size: 100
98955817 GAACTGTTAT
* * * * * *
98955827 TTAAAAAATTGTGTAGATAAAATACAATAGGATGTTCATAGTTTAGTTAAAGTTGTATTAACTGA
1 TTAAAAAATTGTGTAGATAAAATAAAATAGGAAGTTCATAGTTCAGTTAAAATCGAATTAACTGA
* *
98955892 GAGAATGAGTCTAATTCGATCAATGGAGCTCCTAG
66 CAAAATGAGTCTAATTCGATCAATGGAGCTCCTAG
* * *
98955927 TTAAAAAATTGTGTAGTTAGAATAAAATAGGGAAGTTCATAGTTCAGTTAAAATCGAATTAATTG
1 TTAAAAAATTGTGTAGATAAAATAAAATA-GGAAGTTCATAGTTCAGTTAAAATCGAATTAACTG
98955992 ACAAAATCGA-TCTAATT
65 ACAAAAT-GAGTCTAATT
98956009 TGGTTAATCT
Statistics
Matches: 69, Mismatches: 11, Indels: 3
0.83 0.13 0.04
Matches are distributed among these distances:
100 26 0.38
101 41 0.59
102 2 0.03
ACGTcount: A:0.41, C:0.08, G:0.18, T:0.33
Consensus pattern (100 bp):
TTAAAAAATTGTGTAGATAAAATAAAATAGGAAGTTCATAGTTCAGTTAAAATCGAATTAACTGA
CAAAATGAGTCTAATTCGATCAATGGAGCTCCTAG
Found at i:98957880 original size:44 final size:46
Alignment explanation
Indices: 98957802--98957909 Score: 106
Period size: 45 Copynumber: 2.5 Consensus size: 46
98957792 AAAAAATGGG
* *
98957802 GCATAAAACAA-TTCAAAATAATAAGACAGTTTTAAA-TAAATAAT
1 GCATAAAACAATTTCAAAATAATAAGACAGATTTAAAGTAAAGAAT
* *
98957846 GCATAAAACAATTTTAAAATGAA-AAGGCA-ATTTAAAGTAAAGAAT
1 GCATAAAACAATTTCAAAAT-AATAAGACAGATTTAAAGTAAAGAAT
*
98957891 --A-AAAACAATTT-ATAATAAT
1 GCATAAAACAATTTCAAAATAAT
98957910 TAATATATAT
Statistics
Matches: 55, Mismatches: 5, Indels: 11
0.77 0.07 0.15
Matches are distributed among these distances:
40 2 0.04
41 4 0.07
42 10 0.18
43 1 0.02
44 17 0.31
45 19 0.35
46 2 0.04
ACGTcount: A:0.57, C:0.07, G:0.08, T:0.27
Consensus pattern (46 bp):
GCATAAAACAATTTCAAAATAATAAGACAGATTTAAAGTAAAGAAT
Found at i:98960373 original size:6 final size:6
Alignment explanation
Indices: 98960362--98960387 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
98960352 TACCCATCGT
98960362 ATCCTA ATCCTA ATCCTA ATCCTA AT
1 ATCCTA ATCCTA ATCCTA ATCCTA AT
98960388 AATACAATTT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.35, C:0.31, G:0.00, T:0.35
Consensus pattern (6 bp):
ATCCTA
Found at i:98960619 original size:22 final size:23
Alignment explanation
Indices: 98960591--98960638 Score: 64
Period size: 21 Copynumber: 2.2 Consensus size: 23
98960581 AAAATTTTTA
* *
98960591 AAATTTTT-TAAATATAAA-TAT
1 AAATTTTTAAAAATAAAAATTAT
98960612 AAATTTTTAAAAATAAAAATTAT
1 AAATTTTTAAAAATAAAAATTAT
98960635 AAAT
1 AAAT
98960639 AAAAATTTCT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
21 8 0.35
22 8 0.35
23 7 0.30
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (23 bp):
AAATTTTTAAAAATAAAAATTAT
Done.