Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A06
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 115140250
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2234201 characters in sequence are not A, C, G, or T
File 293 of 345
Found at i:99522277 original size:21 final size:21
Alignment explanation
Indices: 99522253--99522296 Score: 79
Period size: 21 Copynumber: 2.1 Consensus size: 21
99522243 CTCTTCAATT
*
99522253 GACACTCACAGTAGACTCAAA
1 GACACTCACAGCAGACTCAAA
99522274 GACACTCACAGCAGACTCAAA
1 GACACTCACAGCAGACTCAAA
99522295 GA
1 GA
99522297 AGCTTTATTT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.43, C:0.30, G:0.16, T:0.11
Consensus pattern (21 bp):
GACACTCACAGCAGACTCAAA
Found at i:99525341 original size:15 final size:15
Alignment explanation
Indices: 99525321--99525352 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
99525311 AAATTTCCCC
99525321 AATCATCTTATTTCT
1 AATCATCTTATTTCT
*
99525336 AATCATTTTATTTCT
1 AATCATCTTATTTCT
99525351 AA
1 AA
99525353 GAAACTTACA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.31, C:0.16, G:0.00, T:0.53
Consensus pattern (15 bp):
AATCATCTTATTTCT
Found at i:99529653 original size:21 final size:21
Alignment explanation
Indices: 99529629--99529681 Score: 88
Period size: 21 Copynumber: 2.5 Consensus size: 21
99529619 CATTGTTTCT
*
99529629 AATCTCACCGCTACAGTACCC
1 AATCTCACCGCTACAGTAACC
*
99529650 AATCTCACCGCTACAGTAACT
1 AATCTCACCGCTACAGTAACC
99529671 AATCTCACCGC
1 AATCTCACCGC
99529682 CACCGCTGTT
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
21 30 1.00
ACGTcount: A:0.30, C:0.40, G:0.09, T:0.21
Consensus pattern (21 bp):
AATCTCACCGCTACAGTAACC
Found at i:99533241 original size:22 final size:23
Alignment explanation
Indices: 99533211--99533253 Score: 61
Period size: 22 Copynumber: 1.9 Consensus size: 23
99533201 TATATAAAAA
*
99533211 TATTCTTTATT-AATTATTTTTT
1 TATTCTTTATTCAATAATTTTTT
*
99533233 TATTTTTTATTCAATAATTTT
1 TATTCTTTATTCAATAATTTT
99533254 AAATTAAAAT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 10 0.56
23 8 0.44
ACGTcount: A:0.26, C:0.05, G:0.00, T:0.70
Consensus pattern (23 bp):
TATTCTTTATTCAATAATTTTTT
Found at i:99537392 original size:16 final size:17
Alignment explanation
Indices: 99537365--99537396 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
99537355 AAATGTAGAC
99537365 GAGAAGAAGAAAAATCA
1 GAGAAGAAGAAAAATCA
99537382 GAGAA-AAGAAAAATC
1 GAGAAGAAGAAAAATC
99537397 TTGTGTATTC
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 10 0.67
17 5 0.33
ACGTcount: A:0.66, C:0.06, G:0.22, T:0.06
Consensus pattern (17 bp):
GAGAAGAAGAAAAATCA
Found at i:99537569 original size:25 final size:25
Alignment explanation
Indices: 99537515--99537570 Score: 78
Period size: 25 Copynumber: 2.3 Consensus size: 25
99537505 CTAAACGCAT
* *
99537515 CATTTT-ATTTAAACTGAAACTCCT
1 CATTTTGATTGAAACTGAAACTCCC
*
99537539 CGTTTTGATTGAAACTGAAACTCCC
1 CATTTTGATTGAAACTGAAACTCCC
99537564 CATTTTG
1 CATTTTG
99537571 TTTATCCGAA
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
24 5 0.19
25 22 0.81
ACGTcount: A:0.29, C:0.21, G:0.11, T:0.39
Consensus pattern (25 bp):
CATTTTGATTGAAACTGAAACTCCC
Found at i:99541355 original size:509 final size:509
Alignment explanation
Indices: 99540398--99541415 Score: 1984
Period size: 509 Copynumber: 2.0 Consensus size: 509
99540388 TTAAAGATTT
99540398 TGATTTTAATAGAATTAGAATTGGGTTGAGAAATTTATTTAATTGGAAAATTGTAATAGCCCGTC
1 TGATTTTAATAGAATTAGAATTGGGTTGAGAAATTTATTTAATTGGAAAATTGTAATAGCCCGTC
99540463 TTTCAGTGGTGTCGAAAATAGTGGTTTCAGGACCACCAAATCTGACGAGTAAGTTCGTAAATGTT
66 TTTCAGTGGTGTCGAAAATAGTGGTTTCAGGACCACCAAATCTGACGAGTAAGTTCGTAAATGTT
99540528 ATTATTTAATATTTACGAGTCAAATATGGTTTTAAAAAGGTTTTTAATTTGGTAATTTATGTTTT
131 ATTATTTAATATTTACGAGTCAAATATGGTTTTAAAAAGGTTTTTAATTTGGTAATTTATGTTTT
*
99540593 ATAACGATTTATTAAGTTCAAGTAGTAAGACTCTAAGGTCAAGTGGCTTTAGAAAATGAGGTATC
196 ATAACGATTTATTAAGCTCAAGTAGTAAGACTCTAAGGTCAAGTGGCTTTAGAAAATGAGGTATC
99540658 GGGACCTCGTTTCTATAAACCAAATCATAAATATTTTTATAAATACTTGTGGAGTGTCATTAAGG
261 GGGACCTCGTTTCTATAAACCAAATCATAAATATTTTTATAAATACTTGTGGAGTGTCATTAAGG
99540723 TGGTATCAAAGTTTCATTGAAAAATTTTAATGTTTCGATAGTTAATTAATTAAAAAGGGGTAAAT
326 TGGTATCAAAGTTTCATTGAAAAATTTTAATGTTTCGATAGTTAATTAATTAAAAAGGGGTAAAT
99540788 TGTAAAAGATGTAAAATTTAGTCATTATTTAATTTGAGTGATTAAATGGTTTATTTAATAAAATA
391 TGTAAAAGATGTAAAATTTAGTCATTATTTAATTTGAGTGATTAAATGGTTTATTTAATAAAATA
99540853 AAAGGGACTTTAATGGTAATTATACAATTTAAGAATTTAGTGGATGGTTTTGGG
456 AAAGGGACTTTAATGGTAATTATACAATTTAAGAATTTAGTGGATGGTTTTGGG
*
99540907 TGATTTTAATAGAATTAGAATTGGGTTGAGAAATTTATTTAATTGGAAAATTGTAATAGCCTGTC
1 TGATTTTAATAGAATTAGAATTGGGTTGAGAAATTTATTTAATTGGAAAATTGTAATAGCCCGTC
*
99540972 TTTCAGTGGTGTCGAAAATAGTGGTTTCGGGACCACCAAATCTGACGAGTAAGTTCGTAAATGTT
66 TTTCAGTGGTGTCGAAAATAGTGGTTTCAGGACCACCAAATCTGACGAGTAAGTTCGTAAATGTT
99541037 ATTATTTAATATTTACGAGTCAAATATGGTTTTAAAAAGGTTTTTAATTTGGTAATTTATGTTTT
131 ATTATTTAATATTTACGAGTCAAATATGGTTTTAAAAAGGTTTTTAATTTGGTAATTTATGTTTT
*
99541102 ATAACGATTTATTAAGCTCAAGTGGTAAGACTCTAAGGTCAAGTGGCTTTAGAAAATGAGGTATC
196 ATAACGATTTATTAAGCTCAAGTAGTAAGACTCTAAGGTCAAGTGGCTTTAGAAAATGAGGTATC
99541167 GGGACCTCGTTTCTATAAACCAAATCATAAATATTTTTATAAATACTT-TCGGAGTGTCATTAAG
261 GGGACCTCGTTTCTATAAACCAAATCATAAATATTTTTATAAATACTTGT-GGAGTGTCATTAAG
99541231 GTGGTATCAAAGTTTCATTGAAAAATTTTAATGTTTCGATAGTTAATTAATTAAAAAGGGGTAAA
325 GTGGTATCAAAGTTTCATTGAAAAATTTTAATGTTTCGATAGTTAATTAATTAAAAAGGGGTAAA
99541296 TTGTAAAAGATGTAAAATTTAGTCATTATTTAATTTGAGTGATTAAATGGTTTATTTAATAAAAT
390 TTGTAAAAGATGTAAAATTTAGTCATTATTTAATTTGAGTGATTAAATGGTTTATTTAATAAAAT
99541361 AAAAGGGACTTTAATGGTAATTATACAATTTAAGAATTTAGTGGATGGTTTTGGG
455 AAAAGGGACTTTAATGGTAATTATACAATTTAAGAATTTAGTGGATGGTTTTGGG
99541416 CAATTAAAAG
Statistics
Matches: 504, Mismatches: 4, Indels: 2
0.99 0.01 0.00
Matches are distributed among these distances:
508 1 0.00
509 503 1.00
ACGTcount: A:0.35, C:0.08, G:0.19, T:0.38
Consensus pattern (509 bp):
TGATTTTAATAGAATTAGAATTGGGTTGAGAAATTTATTTAATTGGAAAATTGTAATAGCCCGTC
TTTCAGTGGTGTCGAAAATAGTGGTTTCAGGACCACCAAATCTGACGAGTAAGTTCGTAAATGTT
ATTATTTAATATTTACGAGTCAAATATGGTTTTAAAAAGGTTTTTAATTTGGTAATTTATGTTTT
ATAACGATTTATTAAGCTCAAGTAGTAAGACTCTAAGGTCAAGTGGCTTTAGAAAATGAGGTATC
GGGACCTCGTTTCTATAAACCAAATCATAAATATTTTTATAAATACTTGTGGAGTGTCATTAAGG
TGGTATCAAAGTTTCATTGAAAAATTTTAATGTTTCGATAGTTAATTAATTAAAAAGGGGTAAAT
TGTAAAAGATGTAAAATTTAGTCATTATTTAATTTGAGTGATTAAATGGTTTATTTAATAAAATA
AAAGGGACTTTAATGGTAATTATACAATTTAAGAATTTAGTGGATGGTTTTGGG
Found at i:99542446 original size:25 final size:25
Alignment explanation
Indices: 99542415--99542467 Score: 74
Period size: 25 Copynumber: 2.1 Consensus size: 25
99542405 AAATATTAAG
99542415 TTTAATAA--TTATTTAATATTATTAT
1 TTTAATAATGTTA-TTAAT-TTATTAT
99542440 TTTAATAATGTTATTAATTTATTAT
1 TTTAATAATGTTATTAATTTATTAT
99542465 TTT
1 TTT
99542468 TTATACTTAA
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
25 18 0.69
26 5 0.19
27 3 0.12
ACGTcount: A:0.36, C:0.00, G:0.02, T:0.62
Consensus pattern (25 bp):
TTTAATAATGTTATTAATTTATTAT
Found at i:99542550 original size:25 final size:25
Alignment explanation
Indices: 99542508--99542556 Score: 73
Period size: 25 Copynumber: 2.0 Consensus size: 25
99542498 ATTAAGTTTC
*
99542508 ATAATTTTTTAATATTATTATTTTA
1 ATAATTTATTAATATTATTATTTTA
99542533 ATAATGTTATTAAT-TTATTATTTT
1 ATAAT-TTATTAATATTATTATTTT
99542557 TTATGCTTAA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
25 15 0.68
26 7 0.32
ACGTcount: A:0.35, C:0.00, G:0.02, T:0.63
Consensus pattern (25 bp):
ATAATTTATTAATATTATTATTTTA
Found at i:99542590 original size:24 final size:23
Alignment explanation
Indices: 99542566--99542643 Score: 72
Period size: 24 Copynumber: 3.3 Consensus size: 23
99542556 TTTATGCTTA
99542566 AATTTTTTAATAATTTTGAAATT
1 AATTTTTTAATAATTTTGAAATT
* *
99542589 AA--GTTTAATAATTTTTAATATT
1 AATTTTTTAATAATTTTGAA-ATT
99542611 -ATTATTTTAATAATTTTGATAATT
1 AATT-TTTTAATAATTTTGA-AATT
*
99542635 TATTATTTT
1 AATT-TTTT
99542644 TTATGCTTAG
Statistics
Matches: 45, Mismatches: 4, Indels: 10
0.76 0.07 0.17
Matches are distributed among these distances:
21 15 0.33
22 3 0.07
23 2 0.04
24 16 0.36
25 9 0.20
ACGTcount: A:0.37, C:0.00, G:0.04, T:0.59
Consensus pattern (23 bp):
AATTTTTTAATAATTTTGAAATT
Found at i:99542597 original size:21 final size:22
Alignment explanation
Indices: 99542571--99542634 Score: 76
Period size: 24 Copynumber: 2.8 Consensus size: 22
99542561 GCTTAAATTT
99542571 TTTAATAATTTTGAAATTA-AG
1 TTTAATAATTTTGAAATTATAG
* *
99542592 TTTAATAATTTTTAATATTATTAT
1 TTTAATAATTTTGAA-ATTA-TAG
99542616 TTTAATAATTTTGATAATT
1 TTTAATAATTTTGA-AATT
99542635 TATTATTTTT
Statistics
Matches: 36, Mismatches: 3, Indels: 5
0.82 0.07 0.11
Matches are distributed among these distances:
21 14 0.39
22 4 0.11
24 17 0.47
25 1 0.03
ACGTcount: A:0.39, C:0.00, G:0.05, T:0.56
Consensus pattern (22 bp):
TTTAATAATTTTGAAATTATAG
Found at i:99542634 original size:87 final size:88
Alignment explanation
Indices: 99542409--99542711 Score: 484
Period size: 87 Copynumber: 3.4 Consensus size: 88
99542399 GAAAAAAAAT
* *
99542409 ATTAAGTTTAATAATTATTTAATATTATTATTTTAATAATGTTATTAATTTATTATTTTTTATAC
1 ATTAAGTTTAATAATTTTTTAATATTATTATTTTAATAATGTTATTAATTTATTATTTTTTATGC
99542474 TTAAATTTTTTTAATAATTTTGAA
66 TTAAA-TTTTTTAATAATTTTGAA
*
99542498 ATTAAGTTTCATAATTTTTTAATATTATTATTTTAATAATGTTATTAATTTATTATTTTTTATGC
1 ATTAAGTTTAATAATTTTTTAATATTATTATTTTAATAATGTTATTAATTTATTATTTTTTATGC
99542563 TTAAATTTTTTAATAATTTTGAA
66 TTAAATTTTTTAATAATTTTGAA
*
99542586 ATTAAGTTTAATAA-TTTTTAATATTATTATTTTAATAATTTTGA-TAATTTATTATTTTTTATG
1 ATTAAGTTTAATAATTTTTTAATATTATTATTTTAATAATGTT-ATTAATTTATTATTTTTTATG
* * *
99542649 CTTAGATTTTTTAATATTTTTAAA
65 CTTAAATTTTTTAATAATTTTGAA
* * *
99542673 ATTAAGTCTAATAATTTTTTAGTATTATTAATTTAATAA
1 ATTAAGTTTAATAATTTTTTAATATTATTATTTTAATAA
99542712 ATTTTTATTG
Statistics
Matches: 201, Mismatches: 11, Indels: 5
0.93 0.05 0.02
Matches are distributed among these distances:
87 80 0.40
88 54 0.27
89 67 0.33
ACGTcount: A:0.36, C:0.02, G:0.04, T:0.58
Consensus pattern (88 bp):
ATTAAGTTTAATAATTTTTTAATATTATTATTTTAATAATGTTATTAATTTATTATTTTTTATGC
TTAAATTTTTTAATAATTTTGAA
Found at i:99547639 original size:104 final size:105
Alignment explanation
Indices: 99547459--99547726 Score: 432
Period size: 104 Copynumber: 2.6 Consensus size: 105
99547449 TAACCGTTAT
* ***
99547459 TGGTGGATCTCGCACTTAGCACCACTGCTGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGGG
1 TGGTGGATATCGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGGG
99547524 AATCAGCACATAGCAACCCCC-TTTCACATTTCAAAGATA
66 AATCAGCACATAGCAACCCCCTTTTCACATTTCAAAGATA
* *
99547563 TGGTGGATATCGCACTTAGCACCACCAATGAACCGGGAAATCAGCACTTAGCAACCCCTCGGGGG
1 TGGTGGATATCGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGGG
99547628 AATCAGCACATAGCAACCCCCTTTTCACATTTCAAAGATA
66 AATCAGCACATAGCAACCCCCTTTTCACATTTCAAAGATA
* **
99547668 TGGTGGATCA-CGCACATAGCACCACCAATGAATCGGGGAATCAGCACACAGCAACCCCT
1 TGGTGGAT-ATCGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCT
99547727 TTATATACAA
Statistics
Matches: 151, Mismatches: 11, Indels: 3
0.92 0.07 0.02
Matches are distributed among these distances:
104 80 0.53
105 70 0.46
106 1 0.01
ACGTcount: A:0.30, C:0.30, G:0.21, T:0.19
Consensus pattern (105 bp):
TGGTGGATATCGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGGG
AATCAGCACATAGCAACCCCCTTTTCACATTTCAAAGATA
Found at i:99548512 original size:27 final size:27
Alignment explanation
Indices: 99548472--99548549 Score: 129
Period size: 27 Copynumber: 2.9 Consensus size: 27
99548462 ACAGGGCCCC
99548472 ACCATTTGCGCCTCTGAGATAGGCACA
1 ACCATTTGCGCCTCTGAGATAGGCACA
*
99548499 ATCATTTGCGCCTCTGAGATAGGCACA
1 ACCATTTGCGCCTCTGAGATAGGCACA
* *
99548526 ACCATTTGCGCCTCTAAGAAAGGC
1 ACCATTTGCGCCTCTGAGATAGGC
99548550 TCGATTAGTC
Statistics
Matches: 47, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 47 1.00
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.23
Consensus pattern (27 bp):
ACCATTTGCGCCTCTGAGATAGGCACA
Found at i:99549062 original size:17 final size:17
Alignment explanation
Indices: 99549017--99549078 Score: 54
Period size: 17 Copynumber: 3.6 Consensus size: 17
99549007 ATTTTAAAAT
* * *
99549017 TTTAAAAATTATTAAAA
1 TTTAAAAAATAATAATA
*
99549034 TATAATAAAATAATAATA
1 TTTAA-AAAATAATAATA
*
99549052 TTTAAAAAATATATATTA
1 TTTAAAAAATA-ATAATA
99549070 -TTAAAAAAT
1 TTTAAAAAAT
99549079 GGGTCGCGCC
Statistics
Matches: 37, Mismatches: 6, Indels: 4
0.79 0.13 0.09
Matches are distributed among these distances:
17 19 0.51
18 18 0.49
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (17 bp):
TTTAAAAAATAATAATA
Found at i:99553081 original size:33 final size:32
Alignment explanation
Indices: 99553044--99553136 Score: 96
Period size: 33 Copynumber: 2.8 Consensus size: 32
99553034 ACACATGCAT
* * ** *
99553044 TGCCATGGCCCAGCCATGGTCTTACAGTCGTAG
1 TGCCATAGCCCAGCTATGGTCTTACA-TCAAAA
* *
99553077 TGCCATAACCCAGTTATGGTCTTATCATCAAAA
1 TGCCATAGCCCAGCTATGGTCTTA-CATCAAAA
*
99553110 TTCCATAGCCCAGCTATGGTCTTACAT
1 TGCCATAGCCCAGCTATGGTCTTACAT
99553137 ATAAATACTA
Statistics
Matches: 49, Mismatches: 10, Indels: 3
0.79 0.16 0.05
Matches are distributed among these distances:
32 3 0.06
33 44 0.90
34 2 0.04
ACGTcount: A:0.25, C:0.28, G:0.18, T:0.29
Consensus pattern (32 bp):
TGCCATAGCCCAGCTATGGTCTTACATCAAAA
Found at i:99556066 original size:42 final size:43
Alignment explanation
Indices: 99555898--99556067 Score: 152
Period size: 42 Copynumber: 4.0 Consensus size: 43
99555888 TTATGATTTA
*
99555898 GATATGTGA-TTCAATGTAAGACCACGTCTAGGACGTTGGCATC
1 GATATGTGAGTTC-ATGTAAGACCATGTCTAGGACGTTGGCATC
* * * * * *
99555941 GATTTGTGATTTACGTATAAGACCATGTCCAGGACATTGGCATC
1 GATATGTGAGTT-CATGTAAGACCATGTCTAGGACGTTGGCATC
* * * * * *
99555985 G-TATATGAGTTCATGTAAAACCCTATCTGGGATAG-TGGCATC
1 GATATGTGAGTTCATGTAAGACCATGTCTAGGA-CGTTGGCATC
99556027 GATATGTGA-TTACA-GTAAGACCATGTCTAGGACGTTGGCAT
1 GATATGTGAGTT-CATGTAAGACCATGTCTAGGACGTTGGCAT
99556068 TGTACGAGCT
Statistics
Matches: 97, Mismatches: 24, Indels: 13
0.72 0.18 0.10
Matches are distributed among these distances:
41 1 0.01
42 44 0.45
43 23 0.24
44 28 0.29
45 1 0.01
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (43 bp):
GATATGTGAGTTCATGTAAGACCATGTCTAGGACGTTGGCATC
Found at i:99564082 original size:42 final size:44
Alignment explanation
Indices: 99564021--99564142 Score: 151
Period size: 42 Copynumber: 2.8 Consensus size: 44
99564011 AATTTTTGAT
99564021 TTACGTGTAAGACCATGTCTGGGACATTGGCATTGTATATGAG-
1 TTACGTGTAAGACCATGTCTGGGACATTGGCATTGTATATGAGA
* * * *
99564064 TT-CGTGTAAGACCTTGTCTGGGACAGTGTCATCG-ATATGAGA
1 TTACGTGTAAGACCATGTCTGGGACATTGGCATTGTATATGAGA
* * * *
99564106 TTACATATAAGACCATGTCTGGGACGTTGGCGTTGTA
1 TTACGTGTAAGACCATGTCTGGGACATTGGCATTGTA
99564143 CGAGCTTTTC
Statistics
Matches: 64, Mismatches: 12, Indels: 5
0.79 0.15 0.06
Matches are distributed among these distances:
41 7 0.11
42 30 0.47
43 26 0.41
44 1 0.02
ACGTcount: A:0.25, C:0.16, G:0.28, T:0.32
Consensus pattern (44 bp):
TTACGTGTAAGACCATGTCTGGGACATTGGCATTGTATATGAGA
Found at i:99568028 original size:20 final size:18
Alignment explanation
Indices: 99567990--99568029 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 18
99567980 AAAGTAATGG
99567990 AAATTTATTTACTAGAAT
1 AAATTTATTTACTAGAAT
*
99568008 AAATTATATTTTCTAAGAAT
1 AAATT-TATTTACT-AGAAT
99568028 AA
1 AA
99568030 CAATTCTACC
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
18 5 0.26
19 7 0.37
20 7 0.37
ACGTcount: A:0.47, C:0.05, G:0.05, T:0.42
Consensus pattern (18 bp):
AAATTTATTTACTAGAAT
Found at i:99581113 original size:43 final size:43
Alignment explanation
Indices: 99581052--99581181 Score: 197
Period size: 43 Copynumber: 3.0 Consensus size: 43
99581042 CATTTTTTTA
* ** * *
99581052 GGCCTTTAACGGCGCTTTTATCACAAACGCCGCTAAAGGCCGT
1 GGCCTTTAGCGGCGCTTTTCCCACAGACGCCGCTAAAAGCCGT
99581095 GGCCTTTAGCGGCGCTTTTCCCACAGACGCCGCTAAAAGCCGT
1 GGCCTTTAGCGGCGCTTTTCCCACAGACGCCGCTAAAAGCCGT
* *
99581138 GACCTTTAGCGGCGTTTTTCCCACAGACGCCGCTAAAAGCCGT
1 GGCCTTTAGCGGCGCTTTTCCCACAGACGCCGCTAAAAGCCGT
99581181 G
1 G
99581182 AAATTAAAAA
Statistics
Matches: 80, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
43 80 1.00
ACGTcount: A:0.21, C:0.32, G:0.25, T:0.22
Consensus pattern (43 bp):
GGCCTTTAGCGGCGCTTTTCCCACAGACGCCGCTAAAAGCCGT
Found at i:99581206 original size:11 final size:11
Alignment explanation
Indices: 99581190--99581214 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
99581180 TGAAATTAAA
99581190 AAAAATATTAT
1 AAAAATATTAT
99581201 AAAAATATTAT
1 AAAAATATTAT
99581212 AAA
1 AAA
99581215 TGTCATGAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (11 bp):
AAAAATATTAT
Found at i:99581237 original size:17 final size:20
Alignment explanation
Indices: 99581202--99581237 Score: 51
Period size: 17 Copynumber: 1.9 Consensus size: 20
99581192 AAATATTATA
99581202 AAAATATTATAAATGTCATG
1 AAAATATTATAAATGTCATG
99581222 AAAA-ATTA-AAAT-TCAT
1 AAAATATTATAAATGTCAT
99581238 TATCAAAATA
Statistics
Matches: 16, Mismatches: 0, Indels: 3
0.84 0.00 0.16
Matches are distributed among these distances:
17 4 0.25
18 4 0.25
19 4 0.25
20 4 0.25
ACGTcount: A:0.56, C:0.06, G:0.06, T:0.33
Consensus pattern (20 bp):
AAAATATTATAAATGTCATG
Found at i:99581514 original size:30 final size:31
Alignment explanation
Indices: 99581429--99581514 Score: 90
Period size: 30 Copynumber: 2.8 Consensus size: 31
99581419 AACTCAAGTT
*
99581429 ATTAAATATTAAAATAAAATAAAAATATAGA
1 ATTAAATACTAAAATAAAATAAAAATATAGA
*
99581460 ATCAAA-ACTAAAATAAATAATAAAAAT-TAG-
1 ATTAAATACTAAAAT-AA-AATAAAAATATAGA
99581490 ATTAAATA-TAAAGATATAAATAAAA
1 ATTAAATACTAAA-ATA-AAATAAAA
99581515 TACAGCAAGT
Statistics
Matches: 47, Mismatches: 3, Indels: 11
0.77 0.05 0.18
Matches are distributed among these distances:
30 24 0.51
31 14 0.30
32 9 0.19
ACGTcount: A:0.67, C:0.02, G:0.03, T:0.27
Consensus pattern (31 bp):
ATTAAATACTAAAATAAAATAAAAATATAGA
Found at i:99585368 original size:16 final size:16
Alignment explanation
Indices: 99585344--99585385 Score: 57
Period size: 16 Copynumber: 2.6 Consensus size: 16
99585334 TTTGGTTCGC
* *
99585344 TGTATTGGATTAGAGG
1 TGTAATGGAATAGAGG
*
99585360 TGTAATGGAATAGATG
1 TGTAATGGAATAGAGG
99585376 TGTAATGGAA
1 TGTAATGGAA
99585386 AAGCTGTGTA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
16 23 1.00
ACGTcount: A:0.33, C:0.00, G:0.33, T:0.33
Consensus pattern (16 bp):
TGTAATGGAATAGAGG
Found at i:99585393 original size:16 final size:16
Alignment explanation
Indices: 99585359--99585397 Score: 60
Period size: 16 Copynumber: 2.4 Consensus size: 16
99585349 TGGATTAGAG
*
99585359 GTGTAATGGAATAGAT
1 GTGTAATGGAAAAGAT
*
99585375 GTGTAATGGAAAAGCT
1 GTGTAATGGAAAAGAT
99585391 GTGTAAT
1 GTGTAAT
99585398 AGCAAATCAA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.36, C:0.03, G:0.31, T:0.31
Consensus pattern (16 bp):
GTGTAATGGAAAAGAT
Found at i:99585651 original size:18 final size:17
Alignment explanation
Indices: 99585630--99585664 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
99585620 TTATTATTAA
*
99585630 ATATATTTTAATTAAAAT
1 ATATAATTTAA-TAAAAT
99585648 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
99585665 TCTTAATAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (17 bp):
ATATAATTTAATAAAAT
Found at i:99585756 original size:15 final size:15
Alignment explanation
Indices: 99585728--99585768 Score: 50
Period size: 15 Copynumber: 2.8 Consensus size: 15
99585718 ATAAAATATA
99585728 AATTAACATA-ATTAT
1 AATTAA-ATATATTAT
*
99585743 TATTAAATATATTAT
1 AATTAAATATATTAT
99585758 AATTAAA-ATAT
1 AATTAAATATAT
99585769 CATGAATTTA
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
14 7 0.30
15 16 0.70
ACGTcount: A:0.54, C:0.02, G:0.00, T:0.44
Consensus pattern (15 bp):
AATTAAATATATTAT
Found at i:99585814 original size:121 final size:122
Alignment explanation
Indices: 99585613--99585906 Score: 490
Period size: 122 Copynumber: 2.4 Consensus size: 122
99585603 ATCATATTTA
99585613 AACATAATTATTATTAAATATATTTTAATTAAAATATAT-AATTTAATAAAATTCTTAATAATCA
1 AACATAATTATTATTAAATATATTTTAATTAAAATATATGAATTTAATAAAATTCTTAATAATCA
*
99585677 ATATTCTTATATGAA-TTACTCAAATCATAATATATGATACTATAAAATATAAATT-
66 ATATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAAGATAAATTG
* *
99585732 AACATAATTATTATTAAATATATTATAATTAAAATATCATGAATTTAATAAAATTCTTAATAATT
1 AACATAATTATTATTAAATATATTTTAATTAAAATAT-ATGAATTTAATAAAATTCTTAATAATC
*
99585797 AATATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAAGATAATTTG
65 AATATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAAGATAAATTG
* *
99585855 AA-ATAATTAATATTAAATATATTTTAATTAAAATATATG-ACTTAATAAAATT
1 AACATAATTATTATTAAATATATTTTAATTAAAATATATGAATTTAATAAAATT
99585907 TAAAATAATT
Statistics
Matches: 164, Mismatches: 7, Indels: 7
0.92 0.04 0.04
Matches are distributed among these distances:
119 36 0.22
120 14 0.09
121 42 0.26
122 70 0.43
123 2 0.01
ACGTcount: A:0.50, C:0.06, G:0.03, T:0.42
Consensus pattern (122 bp):
AACATAATTATTATTAAATATATTTTAATTAAAATATATGAATTTAATAAAATTCTTAATAATCA
ATATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAAGATAAATTG
Found at i:99585952 original size:101 final size:91
Alignment explanation
Indices: 99585903--99586133 Score: 288
Period size: 90 Copynumber: 2.5 Consensus size: 91
99585893 GACTTAATAA
* *
99585903 AATTT-AAAATAATTATAACTAATAAATTATCTTATATGAATTTGTATAATTTAAAATAATTATT
1 AATTTCAAAA-AATTATAA-TAATAAATTATCTTATATGAATTTATATAATTTAAAATAATTAAT
*
99585967 ATTACATATAATTTAA-TAATAATATAT
64 ATTAAATATAATTTAATTAATAATATAT
* * * * *
99585994 AATTTCATAAAATTTTCATAATAAATTTTCTTATATGAATTTATACAATTTAAAATAATTAATAT
1 AATTTCAAAAAATTATAATAATAAATTATCTTATATGAATTTATATAATTTAAAATAATTAATAT
*
99586059 TAAATATAATTTAA-TAATGATATAT
66 TAAATATAATTTAATTAATAATATAT
* * * *
99586084 AATTTCATAAAATTCTTAATAATAAAATATTCTTATATGAATTCATATAA
1 AATTTCAAAAAATT-ATAATAATAAATTA-TCTTATATGAATTTATATAA
99586134 GATAATTTAT
Statistics
Matches: 123, Mismatches: 14, Indels: 5
0.87 0.10 0.04
Matches are distributed among these distances:
90 80 0.65
91 22 0.18
92 21 0.17
ACGTcount: A:0.48, C:0.05, G:0.02, T:0.45
Consensus pattern (91 bp):
AATTTCAAAAAATTATAATAATAAATTATCTTATATGAATTTATATAATTTAAAATAATTAATAT
TAAATATAATTTAATTAATAATATAT
Found at i:99585976 original size:26 final size:28
Alignment explanation
Indices: 99585947--99586113 Score: 85
Period size: 26 Copynumber: 5.8 Consensus size: 28
99585937 TATGAATTTG
*
99585947 TATAATTTAA-AATAAT-TATTATTACA
1 TATAATTTAATAATAATATATAATTACA
*
99585973 TATAATTTAATAATAATATATAATTTCA
1 TATAATTTAATAATAATATATAATTACA
* * *
99586001 TAAAATTTTCATAATAAATTTTCTTATATGAATT-TA
1 TATAA-TTTAATAAT-AA------TATAT-AATTACA
* *
99586037 TACAATTTAA-AATAAT-TA-ATATTAAA
1 TATAATTTAATAATAATATATA-ATTACA
* *
99586063 TATAATTTAATAATGATATATAATTTCA
1 TATAATTTAATAATAATATATAATTACA
* *
99586091 TAAAATTCTTAATAATAAAATAT
1 TATAA-T-TTAATAATAATATAT
99586114 TCTTATATGA
Statistics
Matches: 108, Mismatches: 15, Indels: 32
0.70 0.10 0.21
Matches are distributed among these distances:
24 1 0.01
25 3 0.03
26 22 0.20
27 12 0.11
28 22 0.20
29 10 0.09
30 15 0.14
33 2 0.02
34 3 0.03
35 4 0.04
36 10 0.09
37 4 0.04
ACGTcount: A:0.50, C:0.04, G:0.01, T:0.45
Consensus pattern (28 bp):
TATAATTTAATAATAATATATAATTACA
Found at i:99586026 original size:90 final size:91
Alignment explanation
Indices: 99585922--99586126 Score: 322
Period size: 90 Copynumber: 2.3 Consensus size: 91
99585912 TAATTATAAC
* * * * *
99585922 TAATAAATTATCTTATATGAATTTGTATAATTTAAAATAATTATTATTACATATAATTTAATAAT
1 TAATAAATTTTCTTATATGAATTTATACAATTTAAAATAATTAATATTAAATATAATTTAATAAT
*
99585987 AATATATAATTTCATAAAATT-TTCA
66 AATATATAATTTCATAAAATTCTTAA
99586012 TAATAAATTTTCTTATATGAATTTATACAATTTAAAATAATTAATATTAAATATAATTTAATAAT
1 TAATAAATTTTCTTATATGAATTTATACAATTTAAAATAATTAATATTAAATATAATTTAATAAT
*
99586077 GATATATAATTTCATAAAATTCTTAA
66 AATATATAATTTCATAAAATTCTTAA
*
99586103 TAATAAAATATTCTTATATGAATT
1 TAAT-AAATTTTCTTATATGAATT
99586127 CATATAAGAT
Statistics
Matches: 105, Mismatches: 8, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
90 80 0.76
91 7 0.07
92 18 0.17
ACGTcount: A:0.47, C:0.04, G:0.02, T:0.46
Consensus pattern (91 bp):
TAATAAATTTTCTTATATGAATTTATACAATTTAAAATAATTAATATTAAATATAATTTAATAAT
AATATATAATTTCATAAAATTCTTAA
Found at i:99586088 original size:44 final size:43
Alignment explanation
Indices: 99585947--99586088 Score: 119
Period size: 44 Copynumber: 3.2 Consensus size: 43
99585937 TATGAATTTG
* *
99585947 TATAATTTAAAATAATTATTATTACATATAATTTAATAATAATA
1 TATAATTTAAAATAATTAATATTAAATATAATTTAATAAT-ATA
* * * * *
99585991 TATAATTTCATAAA-ATTTTCATAATAAAT-T-TTCTTATATGAATTTA
1 TATAATTT-A-AAATA-ATTAATATTAAATATAAT-TTA-AT-AATATA
*
99586037 TACAATTTAAAATAATTAATATTAAATATAATTTAATAATGATA
1 TATAATTTAAAATAATTAATATTAAATATAATTTAATAAT-ATA
99586081 TATAATTT
1 TATAATTT
99586089 CATAAAATTC
Statistics
Matches: 74, Mismatches: 14, Indels: 20
0.69 0.13 0.19
Matches are distributed among these distances:
43 3 0.04
44 33 0.45
45 12 0.16
46 23 0.31
47 3 0.04
ACGTcount: A:0.49, C:0.04, G:0.01, T:0.46
Consensus pattern (43 bp):
TATAATTTAAAATAATTAATATTAAATATAATTTAATAATATA
Found at i:99590313 original size:21 final size:21
Alignment explanation
Indices: 99590272--99590315 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
99590262 ATAAACACTA
* *
99590272 AACCCTAAACCTTTAACCCTT
1 AACCCCAAACCATTAACCCTT
99590293 AACCCCAAACCATT-ACACCTT
1 AACCCCAAACCATTAAC-CCTT
99590314 AA
1 AA
99590316 ACTCCAACCC
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
20 2 0.10
21 18 0.90
ACGTcount: A:0.39, C:0.39, G:0.00, T:0.23
Consensus pattern (21 bp):
AACCCCAAACCATTAACCCTT
Found at i:99590406 original size:7 final size:7
Alignment explanation
Indices: 99590396--99590497 Score: 69
Period size: 7 Copynumber: 14.0 Consensus size: 7
99590386 CTAGTTAACT
99590396 CTTAAAC
1 CTTAAAC
99590403 CTTAAAC
1 CTTAAAC
99590410 CTTAAAC
1 CTTAAAC
*
99590417 CCTAAAC
1 CTTAAAC
* * *
99590424 CATATAT
1 CTTAAAC
99590431 CTTAAAC
1 CTTAAAC
*
99590438 CATAGTTAAC
1 C-T--TAAAC
*
99590448 TCATAAAC
1 -CTTAAAC
99590456 CTTAAAC
1 CTTAAAC
*
99590463 CCTAAAC
1 CTTAAAC
* * *
99590470 CATATAT
1 CTTAAAC
99590477 CTTAAAC
1 CTTAAAC
*
99590484 CATAAAC
1 CTTAAAC
99590491 CTTAAAC
1 CTTAAAC
99590498 TATAATGATA
Statistics
Matches: 71, Mismatches: 20, Indels: 8
0.72 0.20 0.08
Matches are distributed among these distances:
7 61 0.86
8 5 0.07
10 4 0.06
11 1 0.01
ACGTcount: A:0.44, C:0.27, G:0.01, T:0.27
Consensus pattern (7 bp):
CTTAAAC
Found at i:99590502 original size:14 final size:14
Alignment explanation
Indices: 99590398--99590502 Score: 84
Period size: 14 Copynumber: 7.2 Consensus size: 14
99590388 AGTTAACTCT
*
99590398 TAAACCTTAAACCT
1 TAAACCTTAAACCA
*
99590412 TAAACCCTAAACCA
1 TAAACCTTAAACCA
* *
99590426 TATATCTTAAACCA
1 TAAACCTTAAACCA
* *
99590440 TAGTTAACTCATAAACCT
1 TA---AAC-CTTAAACCA
*
99590458 TAAACCCTAAACCA
1 TAAACCTTAAACCA
* *
99590472 TATATCTTAAACCA
1 TAAACCTTAAACCA
*
99590486 TAAACCTTAAACTA
1 TAAACCTTAAACCA
99590500 TAA
1 TAA
99590503 TGATAATTAA
Statistics
Matches: 70, Mismatches: 17, Indels: 8
0.74 0.18 0.08
Matches are distributed among these distances:
14 57 0.81
15 3 0.04
17 1 0.01
18 9 0.13
ACGTcount: A:0.46, C:0.26, G:0.01, T:0.28
Consensus pattern (14 bp):
TAAACCTTAAACCA
Found at i:99590716 original size:41 final size:41
Alignment explanation
Indices: 99590666--99590864 Score: 278
Period size: 41 Copynumber: 4.9 Consensus size: 41
99590656 GACTTTTAGT
**
99590666 AAAACGCCGCTAATGCT-TTGGTTTTTAGCTACGTTTTACCA
1 AAAACGCCGCTAATGCTCTT-GTTTTTAGCGGCGTTTTACCA
* * *
99590707 AAAAAGCCGCAAATACTCTTGTTTTTAGCGGCGTTTTACCA
1 AAAACGCCGCTAATGCTCTTGTTTTTAGCGGCGTTTTACCA
*
99590748 AAAACGCCGCTAATGCTCTTGTTTTTAGCGGCGTTTTACGA
1 AAAACGCCGCTAATGCTCTTGTTTTTAGCGGCGTTTTACCA
* *
99590789 AAAGCGCCGCTAATGCTCTGGTTTTTAGCGGCGTTTTACCA
1 AAAACGCCGCTAATGCTCTTGTTTTTAGCGGCGTTTTACCA
* *
99590830 AAAGCGCCGCTAATGCTC-TATTTTTAGC-GCGTTTT
1 AAAACGCCGCTAATGCTCTTGTTTTTAGCGGCGTTTT
99590865 TTACTAAAAC
Statistics
Matches: 143, Mismatches: 14, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
39 7 0.05
40 8 0.06
41 126 0.88
42 2 0.01
ACGTcount: A:0.23, C:0.23, G:0.20, T:0.34
Consensus pattern (41 bp):
AAAACGCCGCTAATGCTCTTGTTTTTAGCGGCGTTTTACCA
Found at i:99590867 original size:41 final size:40
Alignment explanation
Indices: 99590666--99590936 Score: 267
Period size: 41 Copynumber: 6.7 Consensus size: 40
99590656 GACTTTTAGT
* **
99590666 AAAACGCCGCTAATGCTTTGGTTTTTAGCTACGTTTTACCA
1 AAAACGCCGCTAATGCTCT-GTTTTTAGCGGCGTTTTACCA
* * *
99590707 AAAAAGCCGCAAATACTCTTGTTTTTAGCGGCGTTTTACCA
1 AAAACGCCGCTAATGCTC-TGTTTTTAGCGGCGTTTTACCA
*
99590748 AAAACGCCGCTAATGCTCTTGTTTTTAGCGGCGTTTTACGA
1 AAAACGCCGCTAATGCTC-TGTTTTTAGCGGCGTTTTACCA
*
99590789 AAAGCGCCGCTAATGCTCTGGTTTTTAGCGGCGTTTTACCA
1 AAAACGCCGCTAATGCTCT-GTTTTTAGCGGCGTTTTACCA
* * *
99590830 AAAGCGCCGCTAATGCTCTATTTTTAGC-GCGTTTTTTA-CT
1 AAAACGCCGCTAATGCTCTGTTTTTAGCGGCG--TTTTACCA
**** * * ****
99590870 AAAACGTTATTATTGCTCTGTTTTTAGCGGCATTTTTGTT
1 AAAACGCCGCTAATGCTCTGTTTTTAGCGGCGTTTTACCA
*
99590910 AAAACGCCGCTATTGCTCTGTGTTTTA
1 AAAACGCCGCTAATGCTCTGT-TTTTA
99590937 CAATTTTTAC
Statistics
Matches: 195, Mismatches: 28, Indels: 14
0.82 0.12 0.06
Matches are distributed among these distances:
39 7 0.04
40 49 0.25
41 138 0.71
42 1 0.01
ACGTcount: A:0.23, C:0.21, G:0.19, T:0.37
Consensus pattern (40 bp):
AAAACGCCGCTAATGCTCTGTTTTTAGCGGCGTTTTACCA
Found at i:99591439 original size:26 final size:26
Alignment explanation
Indices: 99591402--99591485 Score: 141
Period size: 26 Copynumber: 3.2 Consensus size: 26
99591392 TGATACAAAT
* * *
99591402 TGATAATAGGTTAGGTGAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTTCA
99591428 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
99591454 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
99591480 TGATAA
1 TGATAA
99591486 GAATTTCATA
Statistics
Matches: 55, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 55 1.00
ACGTcount: A:0.32, C:0.05, G:0.26, T:0.37
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTTCA
Found at i:99591641 original size:49 final size:49
Alignment explanation
Indices: 99591569--99591666 Score: 196
Period size: 49 Copynumber: 2.0 Consensus size: 49
99591559 AAGAACAAAG
99591569 TTTTGTCCATCTTTGTTCATCATAGCTGAAAGTTAGAGAAGAGAAAGGA
1 TTTTGTCCATCTTTGTTCATCATAGCTGAAAGTTAGAGAAGAGAAAGGA
99591618 TTTTGTCCATCTTTGTTCATCATAGCTGAAAGTTAGAGAAGAGAAAGGA
1 TTTTGTCCATCTTTGTTCATCATAGCTGAAAGTTAGAGAAGAGAAAGGA
99591667 GAGGAGAAAG
Statistics
Matches: 49, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
49 49 1.00
ACGTcount: A:0.33, C:0.12, G:0.22, T:0.33
Consensus pattern (49 bp):
TTTTGTCCATCTTTGTTCATCATAGCTGAAAGTTAGAGAAGAGAAAGGA
Found at i:99594418 original size:24 final size:24
Alignment explanation
Indices: 99594386--99594444 Score: 82
Period size: 24 Copynumber: 2.5 Consensus size: 24
99594376 AACAGTGTTG
* *
99594386 CCAGGCCGTGTGATAGCCCTTGTC
1 CCAGGCCGTGTGACAGCCCATGTC
*
99594410 CCAGACCGTGTGACAGCCCATGTC
1 CCAGGCCGTGTGACAGCCCATGTC
*
99594434 TCAGGCCGTGT
1 CCAGGCCGTGT
99594445 ACTTCATAAT
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 30 1.00
ACGTcount: A:0.15, C:0.34, G:0.29, T:0.22
Consensus pattern (24 bp):
CCAGGCCGTGTGACAGCCCATGTC
Found at i:99596415 original size:13 final size:14
Alignment explanation
Indices: 99596397--99596426 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
99596387 CATTATTATT
99596397 AATC-AAAAAATTC
1 AATCAAAAAAATTC
99596410 AATCAAAAAAATTC
1 AATCAAAAAAATTC
99596424 AAT
1 AAT
99596427 TAAACCTTGT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 4 0.25
14 12 0.75
ACGTcount: A:0.63, C:0.13, G:0.00, T:0.23
Consensus pattern (14 bp):
AATCAAAAAAATTC
Found at i:99601535 original size:32 final size:32
Alignment explanation
Indices: 99601480--99601553 Score: 87
Period size: 32 Copynumber: 2.3 Consensus size: 32
99601470 TAAATGACTG
*
99601480 AGTATCCGCAAGAATTGTGCTTAACCA-TGAAA
1 AGTATCCGCAAGAATTGTACTTAA-CAGTGAAA
** *
99601512 AGTATCCGCGTGATTTGTACTTAACAGTGAAA
1 AGTATCCGCAAGAATTGTACTTAACAGTGAAA
*
99601544 AGTATTCGCA
1 AGTATCCGCA
99601554 TGTTAGCTAA
Statistics
Matches: 35, Mismatches: 6, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
31 2 0.06
32 33 0.94
ACGTcount: A:0.34, C:0.18, G:0.20, T:0.28
Consensus pattern (32 bp):
AGTATCCGCAAGAATTGTACTTAACAGTGAAA
Found at i:99608204 original size:23 final size:22
Alignment explanation
Indices: 99608164--99608230 Score: 62
Period size: 23 Copynumber: 3.0 Consensus size: 22
99608154 ATTAATTTTA
* * *
99608164 AAAAACTTGAAATGTATATTTG
1 AAAAATTTTAAATATATATTTG
** *
99608186 AAATGTTTTATAATATATATTTTT
1 AAAAATTTTA-AATATATA-TTTG
99608210 AAAAATTTTAAATATATATTT
1 AAAAATTTTAAATATATATTT
99608231 TTGAAATTAT
Statistics
Matches: 35, Mismatches: 8, Indels: 4
0.74 0.17 0.09
Matches are distributed among these distances:
22 9 0.26
23 15 0.43
24 11 0.31
ACGTcount: A:0.45, C:0.01, G:0.06, T:0.48
Consensus pattern (22 bp):
AAAAATTTTAAATATATATTTG
Found at i:99608242 original size:25 final size:25
Alignment explanation
Indices: 99608182--99608243 Score: 83
Period size: 23 Copynumber: 2.5 Consensus size: 25
99608172 GAAATGTATA
*
99608182 TTTGAAATGTTTTATAATATATATT
1 TTTGAAATATTTTATAATATATATT
*
99608207 TTT-AAAAATTTTA-AATATATATT
1 TTTGAAATATTTTATAATATATATT
99608230 TTTGAAATTATTTT
1 TTTGAAA-TATTTT
99608244 TTGAAATTTC
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
23 13 0.41
24 11 0.34
25 8 0.25
ACGTcount: A:0.39, C:0.00, G:0.05, T:0.56
Consensus pattern (25 bp):
TTTGAAATATTTTATAATATATATT
Found at i:99608244 original size:13 final size:14
Alignment explanation
Indices: 99608215--99608251 Score: 51
Period size: 13 Copynumber: 2.7 Consensus size: 14
99608205 TTTTTAAAAA
99608215 TTTT-AAATATATAT
1 TTTTGAAAT-TATAT
99608229 TTTTGAAATTAT-T
1 TTTTGAAATTATAT
99608242 TTTTGAAATT
1 TTTTGAAATT
99608252 TCAAAAAACT
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
13 11 0.50
14 7 0.32
15 4 0.18
ACGTcount: A:0.35, C:0.00, G:0.05, T:0.59
Consensus pattern (14 bp):
TTTTGAAATTATAT
Found at i:99608299 original size:7 final size:7
Alignment explanation
Indices: 99608287--99608325 Score: 55
Period size: 7 Copynumber: 5.7 Consensus size: 7
99608277 ATTATAATAT
99608287 ATTTTTA
1 ATTTTTA
99608294 ATTTTTA
1 ATTTTTA
99608301 ATTTTTA
1 ATTTTTA
99608308 A--TTTA
1 ATTTTTA
99608313 ATTTTTTA
1 A-TTTTTA
99608321 ATTTT
1 ATTTT
99608326 AAATATATAT
Statistics
Matches: 29, Mismatches: 0, Indels: 6
0.83 0.00 0.17
Matches are distributed among these distances:
5 5 0.17
7 19 0.66
8 5 0.17
ACGTcount: A:0.28, C:0.00, G:0.00, T:0.72
Consensus pattern (7 bp):
ATTTTTA
Found at i:99608365 original size:16 final size:17
Alignment explanation
Indices: 99608332--99608382 Score: 52
Period size: 16 Copynumber: 3.0 Consensus size: 17
99608322 TTTTAAATAT
* *
99608332 ATAT-ATTTTTAAATAA
1 ATATCATTTTTTAACAA
99608348 AT-TCATTTTTTAACAA
1 ATATCATTTTTTAACAA
99608364 ATAAATCATTTTTTAACAA
1 AT--ATCATTTTTTAACAA
99608383 TTTTTTTAAT
Statistics
Matches: 29, Mismatches: 2, Indels: 5
0.81 0.06 0.14
Matches are distributed among these distances:
15 1 0.03
16 14 0.48
19 14 0.48
ACGTcount: A:0.45, C:0.08, G:0.00, T:0.47
Consensus pattern (17 bp):
ATATCATTTTTTAACAA
Found at i:99608374 original size:19 final size:20
Alignment explanation
Indices: 99608342--99608382 Score: 75
Period size: 19 Copynumber: 2.1 Consensus size: 20
99608332 ATATATTTTT
99608342 AAATAAATTCATTTTTTAAC
1 AAATAAATTCATTTTTTAAC
99608362 AAATAAA-TCATTTTTTAAC
1 AAATAAATTCATTTTTTAAC
99608381 AA
1 AA
99608383 TTTTTTTAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 14 0.67
20 7 0.33
ACGTcount: A:0.49, C:0.10, G:0.00, T:0.41
Consensus pattern (20 bp):
AAATAAATTCATTTTTTAAC
Found at i:99608530 original size:21 final size:22
Alignment explanation
Indices: 99608479--99608540 Score: 74
Period size: 21 Copynumber: 2.8 Consensus size: 22
99608469 TTGAATATCT
99608479 TTAAAAATAATTTAAAAATCATAA
1 TTAAAAAT-ATTT-AAAATCATAA
*
99608503 TTTAAAATATTATAAAA-CA-AA
1 TTAAAAATATT-TAAAATCATAA
99608524 TTAAAAATATTTAAAAT
1 TTAAAAATATTTAAAAT
99608541 ATTTTAAAAC
Statistics
Matches: 34, Mismatches: 2, Indels: 7
0.79 0.05 0.16
Matches are distributed among these distances:
20 5 0.15
21 12 0.35
22 2 0.06
23 7 0.21
24 8 0.24
ACGTcount: A:0.61, C:0.03, G:0.00, T:0.35
Consensus pattern (22 bp):
TTAAAAATATTTAAAATCATAA
Found at i:99608629 original size:20 final size:21
Alignment explanation
Indices: 99608601--99608658 Score: 55
Period size: 23 Copynumber: 2.7 Consensus size: 21
99608591 ATTTTTATAT
*
99608601 TATTAAAAATAT-ATATTTAG
1 TATTAAAAAAATAATATTTAG
* *
99608621 TATTTAAAAAATAATATTTAAAA
1 TATTAAAAAAATAATATTT--AG
*
99608644 TTTTAAAAAAATAAT
1 TATTAAAAAAATAAT
99608659 TTCAAAAATA
Statistics
Matches: 30, Mismatches: 5, Indels: 3
0.79 0.13 0.08
Matches are distributed among these distances:
20 10 0.33
21 6 0.20
23 14 0.47
ACGTcount: A:0.57, C:0.00, G:0.02, T:0.41
Consensus pattern (21 bp):
TATTAAAAAAATAATATTTAG
Found at i:99608660 original size:21 final size:21
Alignment explanation
Indices: 99608603--99608665 Score: 56
Period size: 21 Copynumber: 2.9 Consensus size: 21
99608593 TTTTATATTA
* **
99608603 TTAAAAATATATATTTAGTATT
1 TTAAAAAAATA-ATTTAAAATT
*
99608625 TAAAAAATAAT-ATTTAAAATT
1 TTAAAAA-AATAATTTAAAATT
99608646 TTAAAAAAATAATTTCAAAA
1 TTAAAAAAATAATTT-AAAA
99608666 ATATATATTT
Statistics
Matches: 33, Mismatches: 5, Indels: 6
0.75 0.11 0.14
Matches are distributed among these distances:
20 3 0.09
21 18 0.55
22 10 0.30
23 2 0.06
ACGTcount: A:0.57, C:0.02, G:0.02, T:0.40
Consensus pattern (21 bp):
TTAAAAAAATAATTTAAAATT
Found at i:99608666 original size:35 final size:36
Alignment explanation
Indices: 99608622--99608703 Score: 121
Period size: 36 Copynumber: 2.2 Consensus size: 36
99608612 TATATTTAGT
99608622 ATTTAAAAAATA-ATATTTAAAATTTTAAAAAAATA
1 ATTTAAAAAATATATATTTAAAATTTTAAAAAAATA
*
99608657 ATTTCAAAAATATATATTTAAAATTTTAAAAAATATA
1 ATTTAAAAAATATATATTTAAAATTTTAAAAAA-ATA
99608694 TATTATAAAA
1 -ATT-TAAAA
99608704 CATTTCAAAT
Statistics
Matches: 41, Mismatches: 2, Indels: 4
0.87 0.04 0.09
Matches are distributed among these distances:
35 11 0.27
36 20 0.49
37 3 0.07
38 3 0.07
39 4 0.10
ACGTcount: A:0.60, C:0.01, G:0.00, T:0.39
Consensus pattern (36 bp):
ATTTAAAAAATATATATTTAAAATTTTAAAAAAATA
Found at i:99610653 original size:22 final size:21
Alignment explanation
Indices: 99610614--99610654 Score: 55
Period size: 22 Copynumber: 1.9 Consensus size: 21
99610604 TTATTACTTT
* *
99610614 ATTTTATTTTAATTTTATACA
1 ATTTTATATTAATATTATACA
99610635 ATTTATATATTAATATTATA
1 ATTT-TATATTAATATTATA
99610655 TTTATATAGT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 4 0.24
22 13 0.76
ACGTcount: A:0.39, C:0.02, G:0.00, T:0.59
Consensus pattern (21 bp):
ATTTTATATTAATATTATACA
Found at i:99611235 original size:19 final size:20
Alignment explanation
Indices: 99611188--99611238 Score: 61
Period size: 19 Copynumber: 2.6 Consensus size: 20
99611178 ATAAACTATT
*
99611188 TACTCAAATTCTTAATGAAA
1 TACTCAAATTCTTAATCAAA
*
99611208 -ACACAAAATT-TTAATCAAA
1 TACTC-AAATTCTTAATCAAA
99611227 TACTCAAATTCT
1 TACTCAAATTCT
99611239 AGAAATCCAA
Statistics
Matches: 25, Mismatches: 3, Indels: 6
0.74 0.09 0.18
Matches are distributed among these distances:
19 16 0.64
20 9 0.36
ACGTcount: A:0.47, C:0.18, G:0.02, T:0.33
Consensus pattern (20 bp):
TACTCAAATTCTTAATCAAA
Found at i:99614594 original size:18 final size:18
Alignment explanation
Indices: 99614571--99614605 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
99614561 GTTTTGGGGA
99614571 AAAATTCTTA-AAAATTTC
1 AAAATT-TTACAAAATTTC
99614589 AAAATTTTACAAAATTT
1 AAAATTTTACAAAATTT
99614606 ATCCAAAAAC
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 3 0.19
18 13 0.81
ACGTcount: A:0.51, C:0.09, G:0.00, T:0.40
Consensus pattern (18 bp):
AAAATTTTACAAAATTTC
Found at i:99619458 original size:13 final size:13
Alignment explanation
Indices: 99619442--99619470 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
99619432 TTACTTTAGT
99619442 TATAATATAATAA
1 TATAATATAATAA
99619455 TATAATATAATAA
1 TATAATATAATAA
99619468 TAT
1 TAT
99619471 TTTCTTAAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (13 bp):
TATAATATAATAA
Found at i:99620352 original size:15 final size:17
Alignment explanation
Indices: 99620332--99620374 Score: 54
Period size: 15 Copynumber: 2.6 Consensus size: 17
99620322 AATAAATTAA
99620332 ATTATTTATTG-AATT-
1 ATTATTTATTGAAATTG
99620347 ATTATTTATATGAAATTG
1 ATTATTTAT-TGAAATTG
*
99620365 ATTATGTATT
1 ATTATTTATT
99620375 CAAGGGTACT
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
15 9 0.38
16 2 0.08
17 5 0.21
18 8 0.33
ACGTcount: A:0.35, C:0.00, G:0.09, T:0.56
Consensus pattern (17 bp):
ATTATTTATTGAAATTG
Found at i:99640360 original size:27 final size:27
Alignment explanation
Indices: 99640330--99640383 Score: 108
Period size: 27 Copynumber: 2.0 Consensus size: 27
99640320 GATCCCTGAA
99640330 TAATCACCTTGTTCTCATGAAAAACTC
1 TAATCACCTTGTTCTCATGAAAAACTC
99640357 TAATCACCTTGTTCTCATGAAAAACTC
1 TAATCACCTTGTTCTCATGAAAAACTC
99640384 GCATATCATA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.33, C:0.26, G:0.07, T:0.33
Consensus pattern (27 bp):
TAATCACCTTGTTCTCATGAAAAACTC
Found at i:99642326 original size:14 final size:13
Alignment explanation
Indices: 99642306--99642337 Score: 55
Period size: 14 Copynumber: 2.4 Consensus size: 13
99642296 AATATTTAAC
99642306 TTGTTCTTAATTA
1 TTGTTCTTAATTA
99642319 TGTGTTCTTAATTA
1 T-TGTTCTTAATTA
99642333 TTGTT
1 TTGTT
99642338 TTGATATCCT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 5 0.28
14 13 0.72
ACGTcount: A:0.19, C:0.06, G:0.12, T:0.62
Consensus pattern (13 bp):
TTGTTCTTAATTA
Found at i:99656902 original size:35 final size:35
Alignment explanation
Indices: 99656856--99656925 Score: 140
Period size: 35 Copynumber: 2.0 Consensus size: 35
99656846 GATTTACATC
99656856 TAGAAAAAAAAATCTATCAGCCATGGCCACTGTTA
1 TAGAAAAAAAAATCTATCAGCCATGGCCACTGTTA
99656891 TAGAAAAAAAAATCTATCAGCCATGGCCACTGTTA
1 TAGAAAAAAAAATCTATCAGCCATGGCCACTGTTA
99656926 CTAACTCTTG
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 35 1.00
ACGTcount: A:0.43, C:0.20, G:0.14, T:0.23
Consensus pattern (35 bp):
TAGAAAAAAAAATCTATCAGCCATGGCCACTGTTA
Found at i:99658567 original size:42 final size:43
Alignment explanation
Indices: 99658487--99658626 Score: 146
Period size: 42 Copynumber: 3.3 Consensus size: 43
99658477 CCTAGACGTA
* *
99658487 GTCTTACATGTAATCAAATATCGATGCCACTGTCCCAAACAGG
1 GTCTTACACGAAATCAAATATCGATGCCACTGTCCCAAACAGG
*
99658530 GTCTTACACGAAATCAAATA-CGATGCCGA-TGTCCCAAACATG
1 GTCTTACACGAAATCAAATATCGATGCC-ACTGTCCCAAACAGG
* * *
99658572 GTCTTACACGTAAATCACAA-GTCGATGCCAAC-ATCCCATAC-GTG
1 GTCTTACACG-AAATCA-AATATCGATGCC-ACTGTCCCAAACAG-G
99658616 GTCTTACACGA
1 GTCTTACACGA
99658627 TAACACATAT
Statistics
Matches: 83, Mismatches: 8, Indels: 12
0.81 0.08 0.12
Matches are distributed among these distances:
42 29 0.35
43 26 0.31
44 28 0.34
ACGTcount: A:0.33, C:0.27, G:0.16, T:0.24
Consensus pattern (43 bp):
GTCTTACACGAAATCAAATATCGATGCCACTGTCCCAAACAGG
Found at i:99664506 original size:23 final size:23
Alignment explanation
Indices: 99664465--99664509 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 23
99664455 AAACAGAGGG
*
99664465 GAAAGAAAGAAGGAAGGAAAAAA
1 GAAAGAAAGAAGAAAGGAAAAAA
*
99664488 GAAAGAAAGAA-AAAGGGAAAAA
1 GAAAGAAAGAAGAAAGGAAAAAA
99664510 TTGGGATTTC
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
22 9 0.45
23 11 0.55
ACGTcount: A:0.71, C:0.00, G:0.29, T:0.00
Consensus pattern (23 bp):
GAAAGAAAGAAGAAAGGAAAAAA
Found at i:99665920 original size:16 final size:16
Alignment explanation
Indices: 99665899--99665932 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 16
99665889 ATATATAGTT
99665899 AATTAATT-AAAATATG
1 AATTAATTGAAAAT-TG
99665915 AATTAATTGAAAATTG
1 AATTAATTGAAAATTG
99665931 AA
1 AA
99665933 AAATGAATTA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 12 0.71
17 5 0.29
ACGTcount: A:0.56, C:0.00, G:0.09, T:0.35
Consensus pattern (16 bp):
AATTAATTGAAAATTG
Found at i:99666164 original size:52 final size:53
Alignment explanation
Indices: 99666102--99666218 Score: 175
Period size: 53 Copynumber: 2.2 Consensus size: 53
99666092 TGTCGGATAT
* *
99666102 TGTTACTGTTACT-TTTTAGATTTGTTCTGATGAGGTACTCTGTGTACCGTAA
1 TGTTACTGTTACTATTTCAGATTTGTTCCGATGAGGTACTCTGTGTACCGTAA
* *
99666154 TGTTATTGTTACTATTTCAGATTTGTTCCGATGAGGTACTCTGTGTACC-TAC
1 TGTTACTGTTACTATTTCAGATTTGTTCCGATGAGGTACTCTGTGTACCGTAA
*
99666206 TGCTACTGTTACT
1 TGTTACTGTTACT
99666219 GTTACTGTTC
Statistics
Matches: 58, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
52 25 0.43
53 33 0.57
ACGTcount: A:0.19, C:0.16, G:0.20, T:0.45
Consensus pattern (53 bp):
TGTTACTGTTACTATTTCAGATTTGTTCCGATGAGGTACTCTGTGTACCGTAA
Found at i:99666403 original size:18 final size:18
Alignment explanation
Indices: 99666340--99666410 Score: 63
Period size: 18 Copynumber: 3.9 Consensus size: 18
99666330 TGGAAAGATC
99666340 GACTGTTACTGAATAATTT
1 GACTGTTACTGAATAA-TT
* * *
99666359 AATTGTTACTGTAT-ATCT
1 GACTGTTACTGAATAAT-T
* *
99666377 GATTTTTACTGAATAATT
1 GACTGTTACTGAATAATT
*
99666395 GACTGTTACTGGATAA
1 GACTGTTACTGAATAA
99666411 CCGATCAGTT
Statistics
Matches: 41, Mismatches: 9, Indels: 5
0.75 0.16 0.09
Matches are distributed among these distances:
17 1 0.02
18 27 0.66
19 13 0.32
ACGTcount: A:0.31, C:0.10, G:0.15, T:0.44
Consensus pattern (18 bp):
GACTGTTACTGAATAATT
Found at i:99666489 original size:18 final size:18
Alignment explanation
Indices: 99666427--99666490 Score: 65
Period size: 18 Copynumber: 3.6 Consensus size: 18
99666417 AGTTGATTGA
*
99666427 TACTGAACAACTGATTAT
1 TACTGAATAACTGATTAT
* * *
99666445 TATTGAATAATTGATTGT
1 TACTGAATAACTGATTAT
** *
99666463 TACCAAATAACTGACTAT
1 TACTGAATAACTGATTAT
99666481 TACTGAATAA
1 TACTGAATAA
99666491 ATAATTGTTC
Statistics
Matches: 34, Mismatches: 12, Indels: 0
0.74 0.26 0.00
Matches are distributed among these distances:
18 34 1.00
ACGTcount: A:0.41, C:0.12, G:0.11, T:0.36
Consensus pattern (18 bp):
TACTGAATAACTGATTAT
Found at i:99667266 original size:10 final size:10
Alignment explanation
Indices: 99667251--99667278 Score: 56
Period size: 10 Copynumber: 2.8 Consensus size: 10
99667241 GTTCCTTTCA
99667251 CTCTCCTACG
1 CTCTCCTACG
99667261 CTCTCCTACG
1 CTCTCCTACG
99667271 CTCTCCTA
1 CTCTCCTA
99667279 GGTATAAAAC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 18 1.00
ACGTcount: A:0.11, C:0.50, G:0.07, T:0.32
Consensus pattern (10 bp):
CTCTCCTACG
Found at i:99671566 original size:11 final size:11
Alignment explanation
Indices: 99671550--99671601 Score: 56
Period size: 11 Copynumber: 4.8 Consensus size: 11
99671540 TCTGAGCCCA
99671550 TTTATTTTTAT
1 TTTATTTTTAT
99671561 TTTA-TTTTATT
1 TTTATTTTTA-T
*
99671572 TTTGTTTTTAT
1 TTTATTTTTAT
99671583 TTT-TGTTTTA-
1 TTTAT-TTTTAT
99671593 TTTATTTTT
1 TTTATTTTT
99671602 CTTAAGACTT
Statistics
Matches: 36, Mismatches: 1, Indels: 9
0.78 0.02 0.20
Matches are distributed among these distances:
10 13 0.36
11 18 0.50
12 5 0.14
ACGTcount: A:0.13, C:0.00, G:0.04, T:0.83
Consensus pattern (11 bp):
TTTATTTTTAT
Found at i:99671582 original size:12 final size:11
Alignment explanation
Indices: 99671555--99671595 Score: 57
Period size: 11 Copynumber: 3.7 Consensus size: 11
99671545 GCCCATTTAT
*
99671555 TTTTA-TTTTA
1 TTTTATTTTTG
99671565 TTTTATTTTTG
1 TTTTATTTTTG
99671576 TTTTTATTTTTG
1 -TTTTATTTTTG
99671588 TTTTATTT
1 TTTTATTT
99671596 ATTTTTCTTA
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
10 5 0.18
11 12 0.43
12 11 0.39
ACGTcount: A:0.12, C:0.00, G:0.05, T:0.83
Consensus pattern (11 bp):
TTTTATTTTTG
Found at i:99672625 original size:20 final size:20
Alignment explanation
Indices: 99672600--99672640 Score: 82
Period size: 20 Copynumber: 2.0 Consensus size: 20
99672590 AAAATAGTAT
99672600 ATTTTAATTTTCATATTATA
1 ATTTTAATTTTCATATTATA
99672620 ATTTTAATTTTCATATTATA
1 ATTTTAATTTTCATATTATA
99672640 A
1 A
99672641 AGAGTTTGGA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.37, C:0.05, G:0.00, T:0.59
Consensus pattern (20 bp):
ATTTTAATTTTCATATTATA
Found at i:99675246 original size:64 final size:64
Alignment explanation
Indices: 99675098--99675348 Score: 206
Period size: 68 Copynumber: 3.8 Consensus size: 64
99675088 ACAGATAGTG
* ** * * * *
99675098 TGTAGCTAGGTCACATGTATGGTGCTGA-GTGCACATCATGT-GTACAAGAGAGCTACAAGACAT
1 TGTAGCTAGGTCGCATGGGTGGTACT-ATGTGTACACCATGTAG-ACAAGAGAGCTAC--GAGA-
99675161 TATGA
61 TAT-A
* *
99675166 TGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCACGTAGACAAGAGAGCTACGAGATATA
1 TGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATATA
* * * * *
99675230 TGTAGCTAGGTCGCATGCGTGGTTCCAGGTGAAGGACACCATGTAGACAAGAGAGCTACGAGATA
1 TGTAGCTAGGTCGCATGGGTGGTACTA--TG-TGTACACCATGTAGACAAGAGAGCTACGAGATA
*
99675295 AA
63 TA
* * *
99675297 T-TGGCTAGGTCACATGGGTGGTACTGA-GTGTTCACCATGT-GTACAAGAGAGC
1 TGTAGCTAGGTCGCATGGGTGGTACT-ATGTGTACACCATGTAG-ACAAGAGAGC
99675349 CGAACTATAT
Statistics
Matches: 151, Mismatches: 25, Indels: 19
0.77 0.13 0.10
Matches are distributed among these distances:
62 1 0.01
63 19 0.13
64 25 0.17
65 3 0.02
66 24 0.16
67 34 0.23
68 44 0.29
69 1 0.01
ACGTcount: A:0.29, C:0.17, G:0.29, T:0.24
Consensus pattern (64 bp):
TGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATATA
Found at i:99675747 original size:19 final size:19
Alignment explanation
Indices: 99675719--99675835 Score: 193
Period size: 19 Copynumber: 6.2 Consensus size: 19
99675709 AATCTTTAAG
99675719 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
*
99675738 GATATACAATCTTAGATAT
1 GATATGCAATCTTAGATAT
99675757 GATA--CAATCTTAGATAT
1 GATATGCAATCTTAGATAT
99675774 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
99675793 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
99675812 GATATGCAATCTTGAAGATAT
1 GATATGCAATCTT--AGATAT
99675833 GAT
1 GAT
99675836 CTTGTAATCT
Statistics
Matches: 93, Mismatches: 1, Indels: 6
0.93 0.01 0.06
Matches are distributed among these distances:
17 17 0.18
19 67 0.72
21 9 0.10
ACGTcount: A:0.38, C:0.10, G:0.15, T:0.36
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:99675749 original size:36 final size:35
Alignment explanation
Indices: 99675709--99675833 Score: 155
Period size: 36 Copynumber: 3.4 Consensus size: 35
99675699 ATGGAAATAT
* *
99675709 AATCTTTAAGGATATGCAATCTTAGATATGATATAC
1 AATCTTGAA-GATATGCAATCTTAGATATGATATGC
99675745 AATCTT--AGATATGATACAATCTTAGATATGATATGC
1 AATCTTGAAGATATG---CAATCTTAGATATGATATGC
99675781 AATCTTAGATATGATATGCAATCTTAGATATGATATGC
1 AATCTT-GA-A-GATATGCAATCTTAGATATGATATGC
99675819 AATCTTGAAGATATG
1 AATCTTGAAGATATG
99675834 ATCTTGTAAT
Statistics
Matches: 80, Mismatches: 1, Indels: 17
0.82 0.01 0.17
Matches are distributed among these distances:
33 6 0.08
34 1 0.01
35 6 0.08
36 32 0.40
37 2 0.03
38 26 0.32
40 1 0.01
41 6 0.08
ACGTcount: A:0.38, C:0.10, G:0.15, T:0.36
Consensus pattern (35 bp):
AATCTTGAAGATATGCAATCTTAGATATGATATGC
Found at i:99675782 original size:55 final size:57
Alignment explanation
Indices: 99675719--99675835 Score: 193
Period size: 55 Copynumber: 2.1 Consensus size: 57
99675709 AATCTTTAAG
99675719 GATATGCAATCTTAGATATGATATACAATCTTAGATATGATA-CAATCTT-AGATAT
1 GATATGCAATCTTAGATATGATATACAATCTTAGATATGATAGCAATCTTAAGATAT
*
99675774 GATATGCAATCTTAGATATGATATGCAATCTTAGATATGATATGCAATCTTGAAGATAT
1 GATATGCAATCTTAGATATGATATACAATCTTAGATATGATA-GCAATCTT-AAGATAT
99675833 GAT
1 GAT
99675836 CTTGTAATCT
Statistics
Matches: 57, Mismatches: 1, Indels: 4
0.92 0.02 0.06
Matches are distributed among these distances:
55 41 0.72
57 7 0.12
59 9 0.16
ACGTcount: A:0.38, C:0.10, G:0.15, T:0.36
Consensus pattern (57 bp):
GATATGCAATCTTAGATATGATATACAATCTTAGATATGATAGCAATCTTAAGATAT
Found at i:99678860 original size:10 final size:10
Alignment explanation
Indices: 99678845--99678893 Score: 50
Period size: 10 Copynumber: 5.0 Consensus size: 10
99678835 ATCGATACCT
99678845 TTTGCATTCA
1 TTTGCATTCA
*
99678855 TTTGCA-TCT
1 TTTGCATTCA
99678864 TATTGCATTTCA
1 T-TTGCA-TTCA
99678876 -TTGCA-TCA
1 TTTGCATTCA
99678884 TTTGCATTCA
1 TTTGCATTCA
99678894 AAATTATAAA
Statistics
Matches: 32, Mismatches: 2, Indels: 10
0.73 0.05 0.23
Matches are distributed among these distances:
8 3 0.09
9 8 0.25
10 19 0.59
12 2 0.06
ACGTcount: A:0.20, C:0.20, G:0.10, T:0.49
Consensus pattern (10 bp):
TTTGCATTCA
Found at i:99678871 original size:20 final size:18
Alignment explanation
Indices: 99678845--99678893 Score: 62
Period size: 20 Copynumber: 2.6 Consensus size: 18
99678835 ATCGATACCT
*
99678845 TTTGCATTCATTTGCATCT
1 TTTGCATTCA-TTGCATCA
99678864 TATTGCATTTCATTGCATCA
1 T-TTGCA-TTCATTGCATCA
99678884 TTTGCATTCA
1 TTTGCATTCA
99678894 AAATTATAAA
Statistics
Matches: 27, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
18 4 0.15
19 6 0.22
20 13 0.48
21 4 0.15
ACGTcount: A:0.20, C:0.20, G:0.10, T:0.49
Consensus pattern (18 bp):
TTTGCATTCATTGCATCA
Found at i:99681496 original size:8 final size:7
Alignment explanation
Indices: 99681479--99681534 Score: 50
Period size: 7 Copynumber: 8.4 Consensus size: 7
99681469 CTTCTATTTC
99681479 AAAAA-A
1 AAAAAGA
*
99681485 AAAAGGA
1 AAAAAGA
99681492 AAAAAG-
1 AAAAAGA
99681498 -AAAAGA
1 AAAAAGA
99681504 AAAAGAGA
1 AAAA-AGA
99681512 AAAAA-A
1 AAAAAGA
99681518 TAAAAAGA
1 -AAAAAGA
99681526 AAAAA-A
1 AAAAAGA
99681532 AAA
1 AAA
99681535 TAGAGAGGCC
Statistics
Matches: 42, Mismatches: 2, Indels: 12
0.75 0.04 0.21
Matches are distributed among these distances:
5 5 0.12
6 9 0.21
7 20 0.48
8 8 0.19
ACGTcount: A:0.86, C:0.00, G:0.12, T:0.02
Consensus pattern (7 bp):
AAAAAGA
Found at i:99681501 original size:13 final size:12
Alignment explanation
Indices: 99681479--99681534 Score: 53
Period size: 12 Copynumber: 4.5 Consensus size: 12
99681469 CTTCTATTTC
99681479 AAAAAA-AAAAGG
1 AAAAAAGAAAA-G
99681491 AAAAAAGAAAAG
1 AAAAAAGAAAAG
*
99681503 AAAAAGAGAAAAAA
1 AAAAA-AG-AAAAG
99681517 ATAAAAAGAAAA-
1 A-AAAAAGAAAAG
99681529 AAAAAA
1 AAAAAA
99681535 TAGAGAGGCC
Statistics
Matches: 39, Mismatches: 1, Indels: 9
0.80 0.02 0.18
Matches are distributed among these distances:
11 5 0.13
12 13 0.33
13 10 0.26
14 7 0.18
15 4 0.10
ACGTcount: A:0.86, C:0.00, G:0.12, T:0.02
Consensus pattern (12 bp):
AAAAAAGAAAAG
Found at i:99681513 original size:20 final size:19
Alignment explanation
Indices: 99681479--99681516 Score: 58
Period size: 19 Copynumber: 1.9 Consensus size: 19
99681469 CTTCTATTTC
99681479 AAAAAAAAAAGGAAAAAAG
1 AAAAAAAAAAGGAAAAAAG
*
99681498 AAAAGAAAAAGAGAAAAAA
1 AAAAAAAAAAG-GAAAAAA
99681517 ATAAAAAGAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 10 0.59
20 7 0.41
ACGTcount: A:0.84, C:0.00, G:0.16, T:0.00
Consensus pattern (19 bp):
AAAAAAAAAAGGAAAAAAG
Found at i:99681517 original size:16 final size:15
Alignment explanation
Indices: 99681481--99681532 Score: 54
Period size: 16 Copynumber: 3.5 Consensus size: 15
99681471 TCTATTTCAA
*
99681481 AAAAAAAAG-GAAA-
1 AAAAAAAAGAAAAAG
*
99681494 AAAGAAAAGAAAAAG
1 AAAAAAAAGAAAAAG
*
99681509 AGAAAAAAATAAAAAG
1 A-AAAAAAAGAAAAAG
99681525 AAAAAAAA
1 AAAAAAAA
99681533 AATAGAGAGG
Statistics
Matches: 32, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
13 8 0.25
14 3 0.09
15 8 0.25
16 13 0.41
ACGTcount: A:0.85, C:0.00, G:0.13, T:0.02
Consensus pattern (15 bp):
AAAAAAAAGAAAAAG
Found at i:99682584 original size:44 final size:44
Alignment explanation
Indices: 99682442--99682756 Score: 221
Period size: 44 Copynumber: 7.1 Consensus size: 44
99682432 CAAAGAAACA
99682442 AGATTTGGCATCCCTGTGTTTATAGGGAA-ACAGATCGAAGATAGC
1 AGATTTGGCATCCCTGTGTTTATAGGGAACA-AG-TCGAAGATAGC
* * * * * **
99682487 AGATCTGACA-CTCCTGTGCTTACAGCGAA-ACAGATCGAAGATTTC
1 AGATTTGGCATC-CCTGTGTTTATAGGGAACA-AG-TCGAAGATAGC
* * *
99682532 AGCA--TGGCATCCCTGTGTTTATAAGGAACAAGTTGAAGATAGG
1 AG-ATTTGGCATCCCTGTGTTTATAGGGAACAAGTCGAAGATAGC
99682575 AGATTTGGCATCCCTGTGTTTATAGGGAAC-AGATCGAAGATAGC
1 AGATTTGGCATCCCTGTGTTTATAGGGAACAAG-TCGAAGATAGC
* * * * * * * * * * ***
99682619 AGATCTGACATTCTTTTGCTTACAGCGAAACAAATCAAAGATTTT
1 AGATTTGGCATCCCTGTGTTTATAG-GGAACAAGTCGAAGATAGC
** * * *
99682664 A-ACATGGCATCCCTATGTTTATAGGGAACGAGTTGAAGATAGC
1 AGATTTGGCATCCCTGTGTTTATAGGGAACAAGTCGAAGATAGC
* *
99682707 AGATTTGGCATCCCTGTGTTTACAGGGAACAAATCGAAGACATAGC
1 AGATTTGGCATCCCTGTGTTTATAGGGAACAAGTCGAAG--ATAGC
99682753 AGAT
1 AGAT
99682757 CTAATTTTCG
Statistics
Matches: 203, Mismatches: 55, Indels: 23
0.72 0.20 0.08
Matches are distributed among these distances:
42 1 0.00
43 23 0.11
44 116 0.57
45 52 0.26
46 11 0.05
ACGTcount: A:0.32, C:0.17, G:0.23, T:0.27
Consensus pattern (44 bp):
AGATTTGGCATCCCTGTGTTTATAGGGAACAAGTCGAAGATAGC
Found at i:99682683 original size:132 final size:132
Alignment explanation
Indices: 99682442--99682758 Score: 490
Period size: 132 Copynumber: 2.4 Consensus size: 132
99682432 CAAAGAAACA
99682442 AGATTTGGCATCCCTGTGTTTATAGGGAAACAGATCGAAGATAGCAGATCTGACACTCCTGTGCT
1 AGATTTGGCATCCCTGTGTTTATAGGG-AACAGATCGAAGATAGCAGATCTGACACTCCTGTGCT
* * * *
99682507 TACAGCGAAACAGATCGAAGATTTCAGCATGGCATCCCTGTGTTTATAAGGAACAAGTTGAAGAT
65 TACAGCGAAACAAATCAAAGATTTCAACATGGCATCCCTATGTTTATAAGGAACAAGTTGAAGAT
*
99682572 AGG
130 AGC
* * *
99682575 AGATTTGGCATCCCTGTGTTTATAGGGAACAGATCGAAGATAGCAGATCTGACATTCTTTTGCTT
1 AGATTTGGCATCCCTGTGTTTATAGGGAACAGATCGAAGATAGCAGATCTGACACTCCTGTGCTT
* * *
99682640 ACAGCGAAACAAATCAAAGATTTTAACATGGCATCCCTATGTTTATAGGGAACGAGTTGAAGATA
66 ACAGCGAAACAAATCAAAGATTTCAACATGGCATCCCTATGTTTATAAGGAACAAGTTGAAGATA
99682705 GC
131 GC
* *
99682707 AGATTTGGCATCCCTGTGTTTACAGGGAACAAATCGAAGACATAGCAGATCT
1 AGATTTGGCATCCCTGTGTTTATAGGGAACAGATCGAAG--ATAGCAGATCT
99682759 AATTTTCGGA
Statistics
Matches: 169, Mismatches: 13, Indels: 3
0.91 0.07 0.02
Matches are distributed among these distances:
132 131 0.78
133 27 0.16
134 11 0.07
ACGTcount: A:0.32, C:0.18, G:0.23, T:0.27
Consensus pattern (132 bp):
AGATTTGGCATCCCTGTGTTTATAGGGAACAGATCGAAGATAGCAGATCTGACACTCCTGTGCTT
ACAGCGAAACAAATCAAAGATTTCAACATGGCATCCCTATGTTTATAAGGAACAAGTTGAAGATA
GC
Found at i:99683123 original size:86 final size:86
Alignment explanation
Indices: 99683023--99683298 Score: 242
Period size: 86 Copynumber: 3.2 Consensus size: 86
99683013 TCTCACACCA
* * *
99683023 AAGCAGATCCAAGATAACAGATCTGGCATCTCCATTTCGACGGAGAGCAGGTACATAGCAGGTCT
1 AAGCAGATCCAAGATAACAGATCTGGCATCTCCATTTC-ACGGAGAACAAGTACATAGCAGATCT
99683088 AACCTTCAGATG-TTTATACTG
65 AACCTTCAGATGATTTATACTG
* *** * *
99683109 AAGCAGATCCAAGAT----GATTTGGCATTCTTGTGTTTACAAGGAACAAATCGAAG-ACATAGC
1 AAGCAGATCCAAGATAACAGATCTGGCA-TC-TCCATTT-CACGG-A-GAA-C-AAGTACATAGC
* * * * * * **
99683169 AGATTTGACTTTCGGATGTTCTTACACCA
59 AGATCTAACCTTCAGATGAT-TTATACTG
* *
99683198 AAGCAGATCCAAGATAACAGATCTGGCATCTCCATTTCAACGGAGAACAAATACATAGTAGATCT
1 AAGCAGATCCAAGATAACAGATCTGGCATCTCCATTTC-ACGGAGAACAAGTACATAGCAGATCT
99683263 AACCTTCAGATGATTT-TACTG
65 AACCTTCAGATGATTTATACTG
99683284 AAGCAGATCCAAGAT
1 AAGCAGATCCAAGAT
99683299 GATTTGGCAT
Statistics
Matches: 143, Mismatches: 32, Indels: 30
0.70 0.16 0.15
Matches are distributed among these distances:
82 8 0.06
83 2 0.01
84 7 0.05
85 2 0.01
86 33 0.23
87 25 0.17
88 25 0.17
89 22 0.15
90 2 0.01
91 7 0.05
92 2 0.01
93 8 0.06
ACGTcount: A:0.34, C:0.20, G:0.20, T:0.26
Consensus pattern (86 bp):
AAGCAGATCCAAGATAACAGATCTGGCATCTCCATTTCACGGAGAACAAGTACATAGCAGATCTA
ACCTTCAGATGATTTATACTG
Found at i:99683188 original size:87 final size:87
Alignment explanation
Indices: 99682917--99683395 Score: 338
Period size: 87 Copynumber: 5.5 Consensus size: 87
99682907 AACTCTAACA
*
99682917 TTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGCATTCTTGTGTTTACAAGGAACAAAT
1 TTCAGATGTTTACACTGAAGCAGATCCAAGATGATTTGGCATTCTTGTGTTTACAAGGAACAAAT
** *
99682982 TGAAGACATAGTAGATTTGACT
66 CAAAGACATAGCAGATTTGACT
* ** * *** *
99683004 TTCGGATGTTCTCACACCAAAGCAGATCCAAGATAACAGATCTGGCA-TC-TCCATTT-CGACGG
1 TTCAGATGTT-T-ACACTGAAGCAGATCCAAGAT----GATTTGGCATTCTTGTGTTTAC-AAGG
* * * * * * *
99683066 ---AGAGC-AGGTACATAGCAGGTCTAACC
59 AACAAATCAAAG-ACATAGCAGATTTGACT
*
99683092 TTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGCATTCTTGTGTTTACAAGGAACAAAT
1 TTCAGATGTTTACACTGAAGCAGATCCAAGATGATTTGGCATTCTTGTGTTTACAAGGAACAAAT
*
99683157 CGAAGACATAGCAGATTTGACT
66 CAAAGACATAGCAGATTTGACT
* ** * ***
99683179 TTCGGATGTTCTTACACCAAAGCAGATCCAAGATAACAGATCTGGCA-TC-TCCATTT-CAACGG
1 TTCAGATG-T-TTACACTGAAGCAGATCCAAGAT----GATTTGGCATTCTTGTGTTTACAA-GG
* * * * * *
99683241 -A-GAA-CAAATACATAGTAGATCTAACC
59 AACAAATCAAAGACATAGCAGATTTGACT
* * * *
99683267 TTCAGATGATTT-TACTGAAGCAGATCCAAGATGATTTGGCATCCTTGTGTTCACAAGGAGCAAA
1 TTCAGATG-TTTACACTGAAGCAGATCCAAGATGATTTGGCATTCTTGTGTTTACAAGGAACAAA
*
99683331 TCAAAGACATAGCAGATTTGGCT
65 TCAAAGACATAGCAGATTTGACT
* * *
99683354 TTCACATGTTTACGCTGAAGCAGATCTAAGATGATTTGGCAT
1 TTCAGATGTTTACACTGAAGCAGATCCAAGATGATTTGGCAT
99683396 CTCTGTATTG
Statistics
Matches: 291, Mismatches: 72, Indels: 58
0.69 0.17 0.14
Matches are distributed among these distances:
82 16 0.05
83 3 0.01
84 12 0.04
85 4 0.01
86 40 0.14
87 87 0.30
88 51 0.18
89 40 0.14
90 5 0.02
91 13 0.04
92 4 0.01
93 16 0.05
ACGTcount: A:0.33, C:0.19, G:0.20, T:0.28
Consensus pattern (87 bp):
TTCAGATGTTTACACTGAAGCAGATCCAAGATGATTTGGCATTCTTGTGTTTACAAGGAACAAAT
CAAAGACATAGCAGATTTGACT
Found at i:99683208 original size:175 final size:175
Alignment explanation
Indices: 99682910--99683356 Score: 743
Period size: 175 Copynumber: 2.6 Consensus size: 175
99682900 CAGAAAGAAC
*
99682910 TCTAACATTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGCATTCTTGTGTTTACAAGG
1 TCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGCATTCTTGTGTTTACAAGG
* *
99682975 AACAAATTGAAGACATAGTAGATTTGACTTTCGGATGTTCTCACACCAAAGCAGATCCAAGATAA
66 AACAAATCGAAGACATAGCAGATTTGACTTTCGGATGTTCTCACACCAAAGCAGATCCAAGATAA
* * ** *
99683040 CAGATCTGGCATCTCCATTTCGACGGAGAGCAGGTACATAGCAGG
131 CAGATCTGGCATCTCCATTTCAACGGAGAACAAATACATAGCAGA
99683085 TCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGCATTCTTGTGTTTACAAGG
1 TCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGCATTCTTGTGTTTACAAGG
*
99683150 AACAAATCGAAGACATAGCAGATTTGACTTTCGGATGTTCTTACACCAAAGCAGATCCAAGATAA
66 AACAAATCGAAGACATAGCAGATTTGACTTTCGGATGTTCTCACACCAAAGCAGATCCAAGATAA
*
99683215 CAGATCTGGCATCTCCATTTCAACGGAGAACAAATACATAGTAGA
131 CAGATCTGGCATCTCCATTTCAACGGAGAACAAATACATAGCAGA
* *
99683260 TCTAACCTTCAGATGATTT-TACTGAAGCAGATCCAAGATGATTTGGCATCCTTGTGTTCACAAG
1 TCTAACCTTCAGATG-TTTATACTGAAGCAGATCCAAGATGATTTGGCATTCTTGTGTTTACAAG
* * *
99683324 GAGCAAATCAAAGACATAGCAGATTTGGCTTTC
65 GAACAAATCGAAGACATAGCAGATTTGACTTTC
99683357 ACATGTTTAC
Statistics
Matches: 256, Mismatches: 15, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
175 253 0.99
176 3 0.01
ACGTcount: A:0.33, C:0.19, G:0.20, T:0.28
Consensus pattern (175 bp):
TCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGCATTCTTGTGTTTACAAGG
AACAAATCGAAGACATAGCAGATTTGACTTTCGGATGTTCTCACACCAAAGCAGATCCAAGATAA
CAGATCTGGCATCTCCATTTCAACGGAGAACAAATACATAGCAGA
Found at i:99683839 original size:16 final size:17
Alignment explanation
Indices: 99683818--99683859 Score: 50
Period size: 19 Copynumber: 2.4 Consensus size: 17
99683808 ATGGAAATAT
99683818 AATCTTA-AGGATATGC
1 AATCTTATAGGATATGC
*
99683834 AATCTTAGATATGATATGC
1 AATCTT--ATAGGATATGC
99683853 AATCTTA
1 AATCTTA
99683860 GATATGATAC
Statistics
Matches: 22, Mismatches: 1, Indels: 5
0.79 0.04 0.18
Matches are distributed among these distances:
16 6 0.27
17 1 0.05
18 1 0.05
19 14 0.64
ACGTcount: A:0.38, C:0.12, G:0.14, T:0.36
Consensus pattern (17 bp):
AATCTTATAGGATATGC
Found at i:99683851 original size:19 final size:19
Alignment explanation
Indices: 99683827--99683905 Score: 117
Period size: 19 Copynumber: 4.2 Consensus size: 19
99683817 TAATCTTAAG
99683827 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
99683846 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
*
99683865 GATA--CAATTTTAGATAT
1 GATATGCAATCTTAGATAT
99683882 GATATGCAATCTTGAAGATAT
1 GATATGCAATCTT--AGATAT
99683903 GAT
1 GAT
99683906 CTTGTAATCT
Statistics
Matches: 54, Mismatches: 2, Indels: 6
0.87 0.03 0.10
Matches are distributed among these distances:
17 16 0.30
19 29 0.54
21 9 0.17
ACGTcount: A:0.38, C:0.09, G:0.16, T:0.37
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:99683878 original size:36 final size:37
Alignment explanation
Indices: 99683818--99683905 Score: 121
Period size: 36 Copynumber: 2.4 Consensus size: 37
99683808 ATGGAAATAT
99683818 AATCTTAAGGATATG---CAATCTTAGATATGATATGC
1 AATCTTAA-GATATGATACAATCTTAGATATGATATGC
*
99683853 AATCTT-AGATATGATACAATTTTAGATATGATATGC
1 AATCTTAAGATATGATACAATCTTAGATATGATATGC
99683889 AATCTTGAAGATATGAT
1 AATCTT-AAGATATGAT
99683906 CTTGTAATCT
Statistics
Matches: 47, Mismatches: 1, Indels: 7
0.85 0.02 0.13
Matches are distributed among these distances:
33 6 0.13
34 1 0.02
35 6 0.13
36 25 0.53
38 9 0.19
ACGTcount: A:0.39, C:0.09, G:0.16, T:0.36
Consensus pattern (37 bp):
AATCTTAAGATATGATACAATCTTAGATATGATATGC
Found at i:99690230 original size:43 final size:42
Alignment explanation
Indices: 99690183--99690281 Score: 137
Period size: 42 Copynumber: 2.3 Consensus size: 42
99690173 TCTCAGACGT
*
99690183 GGTCTTACATGTAATCAAATATCGATGCC-ACTGTCCCAGACAG
1 GGTCTTACACGTAATCAAATA-CGATGCCGA-TGTCCCAGACAG
** *
99690226 GGTCTTACACAAAATCAAATACGATGCCGATGTCCCAGACAT
1 GGTCTTACACGTAATCAAATACGATGCCGATGTCCCAGACAG
99690268 GGTCTTACACGTAA
1 GGTCTTACACGTAA
99690282 ATCATAAGTT
Statistics
Matches: 49, Mismatches: 6, Indels: 3
0.84 0.10 0.05
Matches are distributed among these distances:
42 30 0.61
43 19 0.39
ACGTcount: A:0.32, C:0.25, G:0.18, T:0.24
Consensus pattern (42 bp):
GGTCTTACACGTAATCAAATACGATGCCGATGTCCCAGACAG
Found at i:99690284 original size:43 final size:42
Alignment explanation
Indices: 99690176--99690321 Score: 145
Period size: 43 Copynumber: 3.4 Consensus size: 42
99690166 GCCAACATCT
* *
99690176 CAGACGTGGTCTTACATGT-AATCAAATATCGATGCCACTGTCC
1 CAGACATGGTCTTACACGTAAATCAAATA-CGATGCCA-TGTCC
* *
99690219 CAGACAGGGTCTTACAC-AAAATCAAATACGATGCCGATGTCC
1 CAGACATGGTCTTACACGTAAATCAAATACGATGCC-ATGTCC
* *
99690261 CAGACATGGTCTTACACGTAAATCATAAGT-TGATGCCAACGTCC
1 CAGACATGGTCTTACACGTAAATCA-AA-TACGATGCC-ATGTCC
* *
99690305 CAAACCTGGTCTTACAC
1 CAGACATGGTCTTACAC
99690322 AATAACTCAT
Statistics
Matches: 87, Mismatches: 11, Indels: 9
0.81 0.10 0.08
Matches are distributed among these distances:
42 28 0.32
43 30 0.34
44 28 0.32
45 1 0.01
ACGTcount: A:0.32, C:0.27, G:0.18, T:0.24
Consensus pattern (42 bp):
CAGACATGGTCTTACACGTAAATCAAATACGATGCCATGTCC
Found at i:99696255 original size:17 final size:18
Alignment explanation
Indices: 99696223--99696268 Score: 51
Period size: 17 Copynumber: 2.6 Consensus size: 18
99696213 AAATTTGTGT
*
99696223 ATAATTATTCATTTAA-AA
1 ATAATTA-TGATTTAATAA
99696241 ATAATTATGATTTAATAA
1 ATAATTATGATTTAATAA
*
99696259 A-AATTTTGAT
1 ATAATTATGAT
99696269 AATCACACAT
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
17 15 0.60
18 10 0.40
ACGTcount: A:0.48, C:0.02, G:0.04, T:0.46
Consensus pattern (18 bp):
ATAATTATGATTTAATAA
Found at i:99696271 original size:44 final size:46
Alignment explanation
Indices: 99696212--99696300 Score: 119
Period size: 44 Copynumber: 2.0 Consensus size: 46
99696202 GACATAAAAT
* ** * *
99696212 AAAATTTGTGTATAATTATTCATTTAAAAATAATTATGATTTAATA
1 AAAATTTGTGTATAATCACACATTTAAAAATAACTATAATTTAATA
99696258 AAAATTT-TG-ATAATCACACATTTAAAAATAACTATAATTTAAT
1 AAAATTTGTGTATAATCACACATTTAAAAATAACTATAATTTAAT
99696301 TTACAATTAT
Statistics
Matches: 38, Mismatches: 5, Indels: 2
0.84 0.11 0.04
Matches are distributed among these distances:
44 29 0.76
45 2 0.05
46 7 0.18
ACGTcount: A:0.48, C:0.06, G:0.04, T:0.42
Consensus pattern (46 bp):
AAAATTTGTGTATAATCACACATTTAAAAATAACTATAATTTAATA
Found at i:99696959 original size:275 final size:275
Alignment explanation
Indices: 99696468--99697283 Score: 1465
Period size: 275 Copynumber: 3.0 Consensus size: 275
99696458 TGGATATAGT
99696468 AAATGAAGTGCAACTTTCCATTGGCGTGAGCATGTGACTTCAATTATACTAACTATACGATGTGT
1 AAATGAAGTGCAACTTTCCATTGGCGTGAGCATGTGACTTCAATTATACTAACTATACGATGTGT
*
99696533 TAGGGATAAACCCGATTAAACAATGAACAAGTAAAATAACAAAGAAATTAAAAAAATCGAACACA
66 TGGGGATAAACCCGATTAAACAATGAACAAGTAAAATAACAAAGAAATTAAAAAAATCGAACACA
*
99696598 AATATTTTACGTGGAAAAACCCTTCCGAAGAGGATAAAAAACCATGAGTAAAGATAATTTCACTA
131 AATATTTTACGTGGAAAAACCCCTCCGAAGAGGATAAAAAACCATGAGTAAAGATAATTTCACTA
* * *
99696663 TAACCACAAAAAGGAAGAGTACAAAGATGGAGATAAAACTAAACCCCAAAACCCAAAATAAGAAC
196 TAACCACAAAAAGGAAGAGTACGAAGATGGAGATAAAACTAAACCCCGAAACTCAAAATAAGAAC
*
99696728 CCCCAAAACGTGAGC
261 CCTCAAAACGTGAGC
* *
99696743 AAATGAAATGCAACTTTCCATTGGCATGAGCATGTGACTTCAATTATACTAACTATACGATGTGT
1 AAATGAAGTGCAACTTTCCATTGGCGTGAGCATGTGACTTCAATTATACTAACTATACGATGTGT
*
99696808 TGGGGATAAACCCGATTAAACAATGAACAAGTAAAATAACAAAGAAATTAAAAAAATCTAACACA
66 TGGGGATAAACCCGATTAAACAATGAACAAGTAAAATAACAAAGAAATTAAAAAAATCGAACACA
*
99696873 AATATTTTACGTGGAAAAACCCCTCCAAAGAGGATAAAAAACCATGAGTAAAGATAATTTCACTA
131 AATATTTTACGTGGAAAAACCCCTCCGAAGAGGATAAAAAACCATGAGTAAAGATAATTTCACTA
99696938 TAACCACAAAAAGGAAGAGTACGAAGATGGAGATAAAACTAAACCCCGAAACTCAAAATAAGAAC
196 TAACCACAAAAAGGAAGAGTACGAAGATGGAGATAAAACTAAACCCCGAAACTCAAAATAAGAAC
99697003 CCTCAAAACGTGAGC
261 CCTCAAAACGTGAGC
**
99697018 AAATGAAGTGCAACTTTCCATTGGCGTGAGCATGTGACTTCAATTATACTAACTA-AAAATGTGT
1 AAATGAAGTGCAACTTTCCATTGGCGTGAGCATGTGACTTCAATTATACTAACTATACGATGTGT
* * * *
99697082 TGGCGATAAACTCAATTAAACAATGAACAAGTAAAATAACAAAGAAATTAAAAAAATCGAACCCA
66 TGGGGATAAACCCGATTAAACAATGAACAAGTAAAATAACAAAGAAATTAAAAAAATCGAACACA
99697147 AATATTTTACGTGGAAAAACCCCTCCGAAGAGGATAAAAAACCATGAGTAAAGATAATTTCACTA
131 AATATTTTACGTGGAAAAACCCCTCCGAAGAGGATAAAAAACCATGAGTAAAGATAATTTCACTA
*
99697212 TAACCATAAAAAGGAAGAGTACGAAGATGGAGATAAAACTAAACCCCGAAACTCAAAATAA-AAC
196 TAACCACAAAAAGGAAGAGTACGAAGATGGAGATAAAACTAAACCCCGAAACTCAAAATAAGAAC
99697276 CCTCAAAA
261 CCTCAAAA
99697284 TGTAAACACA
Statistics
Matches: 520, Mismatches: 21, Indels: 2
0.96 0.04 0.00
Matches are distributed among these distances:
273 11 0.02
274 191 0.37
275 318 0.61
ACGTcount: A:0.47, C:0.17, G:0.15, T:0.20
Consensus pattern (275 bp):
AAATGAAGTGCAACTTTCCATTGGCGTGAGCATGTGACTTCAATTATACTAACTATACGATGTGT
TGGGGATAAACCCGATTAAACAATGAACAAGTAAAATAACAAAGAAATTAAAAAAATCGAACACA
AATATTTTACGTGGAAAAACCCCTCCGAAGAGGATAAAAAACCATGAGTAAAGATAATTTCACTA
TAACCACAAAAAGGAAGAGTACGAAGATGGAGATAAAACTAAACCCCGAAACTCAAAATAAGAAC
CCTCAAAACGTGAGC
Found at i:99697831 original size:17 final size:17
Alignment explanation
Indices: 99697809--99697843 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
99697799 GTCACTATTG
99697809 ATCCTTCTAGAATATAA
1 ATCCTTCTAGAATATAA
99697826 ATCCTTCTAGAATATAA
1 ATCCTTCTAGAATATAA
99697843 A
1 A
99697844 GACAACCAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.43, C:0.17, G:0.06, T:0.34
Consensus pattern (17 bp):
ATCCTTCTAGAATATAA
Found at i:99711785 original size:47 final size:46
Alignment explanation
Indices: 99711726--99711873 Score: 135
Period size: 47 Copynumber: 3.2 Consensus size: 46
99711716 TCATATAAGA
* *
99711726 ATATTTATTATTAAGAAATTTATAAAATTATATATCATTATTAAATT
1 ATATTTAATATTAAGAAATTTAT-AAATTATATATAATTATTAAATT
**
99711773 ATATTTAATATTAA-TTATTT-TAAATTATATA-AATTCATATAAGA--
1 ATATTTAATATTAAGAAATTTATAAATTATATATAATT-AT-TAA-ATT
* * * * *
99711817 AAATTTATTATCAAGAATTTTATGAAATTATATATTATTATTAAATT
1 ATATTTAATATTAAGAAATTTAT-AAATTATATATAATTATTAAATT
99711864 ATATTTAATA
1 ATATTTAATA
99711874 ATAATTATTT
Statistics
Matches: 79, Mismatches: 13, Indels: 18
0.72 0.12 0.16
Matches are distributed among these distances:
43 3 0.04
44 23 0.29
45 8 0.10
46 9 0.11
47 33 0.42
48 3 0.04
ACGTcount: A:0.47, C:0.02, G:0.03, T:0.49
Consensus pattern (46 bp):
ATATTTAATATTAAGAAATTTATAAATTATATATAATTATTAAATT
Found at i:99711823 original size:91 final size:91
Alignment explanation
Indices: 99711711--99711917 Score: 342
Period size: 91 Copynumber: 2.3 Consensus size: 91
99711701 ATGATTTTAG
* *
99711711 TAAATTCATATAAGAATATTTATTATTAAGAAATTTATAAAATTATATATCATTATTAAATTATA
1 TAAATTCATATAAGAAAATTTATTATCAAGAAATTTATAAAATTATATATCATTATTAAATTATA
*
99711776 TTTAATATTAATTATTTTAAATTATA
66 TTTAATAATAATTATTTTAAATTATA
* * *
99711802 TAAATTCATATAAGAAAATTTATTATCAAGAATTTTATGAAATTATATATTATTATTAAATTATA
1 TAAATTCATATAAGAAAATTTATTATCAAGAAATTTATAAAATTATATATCATTATTAAATTATA
99711867 TTTAATAATAATTATTTTAAATTATA
66 TTTAATAATAATTATTTTAAATTATA
* *
99711893 CAAATTCAAATAAGAAAATTTATTA
1 TAAATTCATATAAGAAAATTTATTA
99711918 GTAATAATTA
Statistics
Matches: 108, Mismatches: 8, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
91 108 1.00
ACGTcount: A:0.48, C:0.03, G:0.03, T:0.46
Consensus pattern (91 bp):
TAAATTCATATAAGAAAATTTATTATCAAGAAATTTATAAAATTATATATCATTATTAAATTATA
TTTAATAATAATTATTTTAAATTATA
Found at i:99711857 original size:101 final size:92
Alignment explanation
Indices: 99711803--99711994 Score: 176
Period size: 101 Copynumber: 2.0 Consensus size: 92
99711793 TAAATTATAT
*
99711803 AAATTCATATAAGAAAATTTATTA-TCAAGAATT-TTATGA--AATTATATATTATTATTAAATT
1 AAATTCAAATAAGAAAATTTATTAGT-AAGAATTATT-TGATTAATTATATA-TATTATTAAATT
*
99711864 ATATTTAATAATAATTATTTTAAATTATAC
63 ATATTTAATAATAATTATTTTAAATTATAT
* * *
99711894 AAATTCAAATAAGAAAATTTATTAGTAATAATTATTTTAAATTTTATTAAATCATATATTTTAAT
1 AAATTCAAATAAGAAAATTTATTAGTAAGAATTA-TTT-GA-TTAATT--AT-ATATA--TT-AT
* * *
99711959 TAAAATATATGTAATAATAATTATTTCAAATTATAT
57 TAAATTATATTTAATAATAATTATTTTAAATTATAT
99711995 TTTATAGTAT
Statistics
Matches: 80, Mismatches: 8, Indels: 16
0.77 0.08 0.15
Matches are distributed among these distances:
91 29 0.36
92 2 0.03
93 3 0.04
96 3 0.04
98 4 0.05
99 3 0.04
100 2 0.03
101 34 0.43
ACGTcount: A:0.48, C:0.03, G:0.03, T:0.46
Consensus pattern (92 bp):
AAATTCAAATAAGAAAATTTATTAGTAAGAATTATTTGATTAATTATATATATTATTAAATTATA
TTTAATAATAATTATTTTAAATTATAT
Found at i:99711884 original size:47 final size:46
Alignment explanation
Indices: 99711744--99711892 Score: 125
Period size: 44 Copynumber: 3.3 Consensus size: 46
99711734 TATTAAGAAA
* *
99711744 TTTATAAAATTATATATCATTATTAAATTATATTTAATATTAATTA-
1 TTTAT-AAATTATATATAATTATTAAATTATATTTAATAATAATTAT
* * **
99711790 TTT-TAAATTATATA-AATTCATATAAGA--AAATTT-ATTATCAAGAAT
1 TTTATAAATTATATATAATT-AT-TAA-ATTATATTTAATAAT-AATTAT
*
99711835 TTTATGAAATTATATATTATTATTAAATTATATTTAATAATAATTA-
1 TTTAT-AAATTATATATAATTATTAAATTATATTTAATAATAATTAT
99711881 TTT-TAAATTATA
1 TTTATAAATTATA
99711893 CAAATTCAAA
Statistics
Matches: 81, Mismatches: 11, Indels: 24
0.70 0.09 0.21
Matches are distributed among these distances:
43 6 0.07
44 28 0.35
45 9 0.11
46 11 0.14
47 20 0.25
48 7 0.09
ACGTcount: A:0.46, C:0.02, G:0.02, T:0.50
Consensus pattern (46 bp):
TTTATAAATTATATATAATTATTAAATTATATTTAATAATAATTAT
Found at i:99711981 original size:117 final size:118
Alignment explanation
Indices: 99711901--99712219 Score: 422
Period size: 117 Copynumber: 2.7 Consensus size: 118
99711891 TACAAATTCA
*
99711901 AATAAGAAAATT-TATTAGTAATAATT-ATT-TT-A-AATTTTATTAAATCATATATTTTAATTA
1 AATAAG-AAATTATATAAG-AATAATTGATTATTAAGAATTTTATTAAATCATATATTTTAATTA
* *
99711961 AAATATATGTAATAATAATTAT-TTCAAATTATATTTTATAGTATCATATATTAT
64 AAATATATTTAATAATAATTATATTTAAATTATATTTTATAGTATCATATATTAT
* *
99712015 GATTTTAGTAAATTCATATAAGAA-AATTGATTATTAAGAATTTTATTAAATCATATATTTTAAT
1 -A-ATAAG-AAATT-ATATAAGAATAATTGATTATTAAGAATTTTATTAAATCATATATTTTAAT
* *
99712079 TAAAATATATTTAATAATAATCAT-GTTAAATTATATTTTATAGTATCATATATTAT
62 TAAAATATATTTAATAATAATTATATTTAAATTATATTTTATAGTATCATATATTAT
* * *
99712135 TATATGAAATTCATATAAGAAT-ATTGATTATTAAGAATTTTATTAAATTATATATTTTAATTAA
1 AATAAGAAATT-ATATAAGAATAATTGATTATTAAGAATTTTATTAAATCATATATTTTAATTAA
99712199 AATATATTTAATAATAATTAT
65 AATATATTTAATAATAATTAT
99712220 GTTAAAATAT
Statistics
Matches: 182, Mismatches: 14, Indels: 14
0.87 0.07 0.07
Matches are distributed among these distances:
115 1 0.01
116 12 0.07
117 81 0.45
118 9 0.05
119 1 0.01
120 78 0.43
ACGTcount: A:0.45, C:0.03, G:0.05, T:0.47
Consensus pattern (118 bp):
AATAAGAAATTATATAAGAATAATTGATTATTAAGAATTTTATTAAATCATATATTTTAATTAAA
ATATATTTAATAATAATTATATTTAAATTATATTTTATAGTATCATATATTAT
Found at i:99712012 original size:59 final size:58
Alignment explanation
Indices: 99711944--99712225 Score: 190
Period size: 59 Copynumber: 4.8 Consensus size: 58
99711934 ATTTTATTAA
*
99711944 ATCATATATTTTAATTAAAATATATGTAATAATAATTATTTCAAATTATATTTTATAGT
1 ATCATATATTTTAATTAAAATATATATAATAATAATTATTT-AAATTATATTTTATAGT
* * * * *
99712003 ATCATATATTATGATTTTAGTAAAT-TCATATAAGAA-AATTGATTATTAA-GA-ATTTTATTA-
1 ATCATATATT-TTA-ATTA--AAATAT-ATATAATAATAATT-ATT-TAAATTATATTTTA-TAG
*
99712063 A
58 T
* *
99712064 ATCATATATTTTAATTAAAATATATTTAATAATAATCATGTTAAATTATATTTTATAGT
1 ATCATATATTTTAATTAAAATATATATAATAATAATTAT-TTAAATTATATTTTATAGT
* * * * *
99712123 ATCATATATTATT-ATATGAAAT-TCATATAAGAAT-ATTGATTATTAA-GA-ATTTTATTA-A
1 ATCATATATT-TTAAT-TAAAATAT-ATATAATAATAATT-ATT-TAAATTATATTTTA-TAGT
* *
99712181 ATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTAAA
1 ATCATATATTTTAATTAAAATATATATAATAATAATTAT-TTAAA
99712226 ATATGATTAA
Statistics
Matches: 172, Mismatches: 27, Indels: 50
0.69 0.11 0.20
Matches are distributed among these distances:
57 36 0.21
58 30 0.17
59 38 0.22
60 24 0.14
61 19 0.11
62 8 0.05
63 16 0.09
64 1 0.01
ACGTcount: A:0.45, C:0.03, G:0.05, T:0.47
Consensus pattern (58 bp):
ATCATATATTTTAATTAAAATATATATAATAATAATTATTTAAATTATATTTTATAGT
Found at i:99712068 original size:61 final size:61
Alignment explanation
Indices: 99712003--99712197 Score: 156
Period size: 61 Copynumber: 3.3 Consensus size: 61
99711993 ATTTTATAGT
* *
99712003 ATCATATATTATGATTTTAGTAAATTCATATAAGAAAATTGATTATTAAGAATTTTATTAA
1 ATCATATATTATAATTATAGTAAATTCATATAAGAAAATTGATTATTAAGAATTTTATTAA
* * * * * * * * *
99712064 ATCATATATTTTAATTAAAATATATTTA-ATAATAATCA-TG-TTAAATT-A-TATTTTA-TAGT
1 ATCATATATTATAATTATAGTAAATTCATATAAGAA-AATTGATT--ATTAAGAATTTTATTA-A
* *
99712123 ATCATATATTATTA-TAT-G-AAATTCATATAAGAATATTGATTATTAAGAATTTTATTAA
1 ATCATATATTATAATTATAGTAAATTCATATAAGAAAATTGATTATTAAGAATTTTATTAA
* *
99712181 ATTATATATTTTAATTA
1 ATCATATATTATAATTA
99712198 AAATATATTT
Statistics
Matches: 99, Mismatches: 24, Indels: 24
0.67 0.16 0.16
Matches are distributed among these distances:
56 9 0.09
57 9 0.09
58 23 0.23
59 24 0.24
60 9 0.09
61 25 0.25
ACGTcount: A:0.44, C:0.03, G:0.06, T:0.47
Consensus pattern (61 bp):
ATCATATATTATAATTATAGTAAATTCATATAAGAAAATTGATTATTAAGAATTTTATTAA
Found at i:99712199 original size:18 final size:17
Alignment explanation
Indices: 99712171--99712205 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
99712161 ATTATTAAGA
*
99712171 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
99712188 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
99712206 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:99712222 original size:117 final size:120
Alignment explanation
Indices: 99711933--99712225 Score: 495
Period size: 117 Copynumber: 2.5 Consensus size: 120
99711923 AATTATTTTA
*
99711933 AATTTTATTAAATCATATATTTTAATTAAAATATATGTAATAATAATTAT-TTCAAATTATATTT
1 AATTTTATTAAATCATATATTTTAATTAAAATATATTTAATAATAATTATGTT-AAATTATATTT
*
99711997 TATAGTATCATATATTATGATTTTAGTAAATTCATATAAGAAAATTGATTATTAAG
65 TATAGTATCATATATTATGATTATAGTAAATTCATATAAGAAAATTGATTATTAAG
*
99712053 AATTTTATTAAATCATATATTTTAATTAAAATATATTTAATAATAATCATGTTAAATTATATTTT
1 AATTTTATTAAATCATATATTTTAATTAAAATATATTTAATAATAATTATGTTAAATTATATTTT
* *
99712118 ATAGTATCATATATTATTA-TAT-G-AAATTCATATAAGAATATTGATTATTAAG
66 ATAGTATCATATATTATGATTATAGTAAATTCATATAAGAAAATTGATTATTAAG
*
99712170 AATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTAAA
1 AATTTTATTAAATCATATATTTTAATTAAAATATATTTAATAATAATTATGTTAAA
99712226 ATATGATTAA
Statistics
Matches: 165, Mismatches: 7, Indels: 5
0.93 0.04 0.03
Matches are distributed among these distances:
117 82 0.50
118 1 0.01
119 2 0.01
120 78 0.47
121 2 0.01
ACGTcount: A:0.45, C:0.03, G:0.05, T:0.47
Consensus pattern (120 bp):
AATTTTATTAAATCATATATTTTAATTAAAATATATTTAATAATAATTATGTTAAATTATATTTT
ATAGTATCATATATTATGATTATAGTAAATTCATATAAGAAAATTGATTATTAAG
Found at i:99713295 original size:44 final size:44
Alignment explanation
Indices: 99713257--99713423 Score: 262
Period size: 44 Copynumber: 3.8 Consensus size: 44
99713247 AGTTTCTTAC
* *
99713257 TTAAACTTTGATTAGTATAGGTTATTTTAGTATTAGTTTCCCAT
1 TTAAACTCTGATTAGTATAGGTTATTTTAATATTAGTTTCCCAT
* * *
99713301 TTAAAATTTGATTAGTATAGGTTACTTTAATATTAGTTTCCCAT
1 TTAAACTCTGATTAGTATAGGTTATTTTAATATTAGTTTCCCAT
* *
99713345 TTAAACTCTGATTAGTAGAGGTTCTTTTAATATTAGTTTCCCAT
1 TTAAACTCTGATTAGTATAGGTTATTTTAATATTAGTTTCCCAT
*
99713389 TTAAACTCTGATTAATATAGGTTATTTTAATATTA
1 TTAAACTCTGATTAGTATAGGTTATTTTAATATTA
99713424 TTTTATCTAC
Statistics
Matches: 112, Mismatches: 11, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
44 112 1.00
ACGTcount: A:0.31, C:0.10, G:0.12, T:0.48
Consensus pattern (44 bp):
TTAAACTCTGATTAGTATAGGTTATTTTAATATTAGTTTCCCAT
Found at i:99728478 original size:12 final size:12
Alignment explanation
Indices: 99728461--99728487 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
99728451 GACGAATTTC
99728461 ATTTTAATTTTT
1 ATTTTAATTTTT
99728473 ATTTTAATTTTT
1 ATTTTAATTTTT
99728485 ATT
1 ATT
99728488 AATATTCATT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.26, C:0.00, G:0.00, T:0.74
Consensus pattern (12 bp):
ATTTTAATTTTT
Found at i:99729819 original size:24 final size:24
Alignment explanation
Indices: 99729787--99729834 Score: 87
Period size: 24 Copynumber: 2.0 Consensus size: 24
99729777 ATTTCACAGT
*
99729787 TTATAACGATCTGCTTTGATGTGA
1 TTATAACGATCTGCTTTGACGTGA
99729811 TTATAACGATCTGCTTTGACGTGA
1 TTATAACGATCTGCTTTGACGTGA
99729835 CCTAACTTTT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.25, C:0.15, G:0.21, T:0.40
Consensus pattern (24 bp):
TTATAACGATCTGCTTTGACGTGA
Found at i:99733677 original size:48 final size:47
Alignment explanation
Indices: 99733458--99733697 Score: 175
Period size: 47 Copynumber: 4.9 Consensus size: 47
99733448 CCATGGCAAC
* * * *
99733458 ATGTGATATGTGATTTGCGTATAAGACCATAGCTAGGCTATGGCATCGGAGA
1 ATGTGATATGTGATCT--GTATAAGACCATAGTTGGGCTATGGCAT---TGA
* * * *
99733510 GATGTGATTATGTGCTTCCGTATAAGACCATA-TCTGGGATATGGCATCG-
1 -ATGTGA-TATGTG-ATCTGTATAAGACCATAGT-TGGGCTATGGCATTGA
* * * * *
99733559 GTGTGATATATGCTACTGTATAAGACCATA-TCTGGGATATGGCA-TCA
1 ATGTGATATGTGAT-CTGTATAAGACCATAGT-TGGGCTATGGCATTGA
* *
99733606 ATGAGATATGTGAT-TCGTGTAAGACCATAGTTGGGCTATGGCATTGA
1 ATGTGATATGTGATCT-GTATAAGACCATAGTTGGGCTATGGCATTGA
* *
99733653 TATGTGATATGTGATCTGTGTAAGACCATAGCTGGGCTATGGCAT
1 -ATGTGATATGTGATCTGTATAAGACCATAGTTGGGCTATGGCAT
99733698 CATTATATGA
Statistics
Matches: 155, Mismatches: 22, Indels: 25
0.77 0.11 0.12
Matches are distributed among these distances:
45 1 0.01
46 24 0.15
47 46 0.30
48 45 0.29
49 1 0.01
50 1 0.01
53 30 0.19
54 6 0.04
55 1 0.01
ACGTcount: A:0.27, C:0.14, G:0.28, T:0.32
Consensus pattern (47 bp):
ATGTGATATGTGATCTGTATAAGACCATAGTTGGGCTATGGCATTGA
Found at i:99733719 original size:42 final size:45
Alignment explanation
Indices: 99733532--99733741 Score: 162
Period size: 47 Copynumber: 4.6 Consensus size: 45
99733522 TGCTTCCGTA
* * * ** *
99733532 TAAGACCATA-TCTGGGATATGGCATCGGTGTGATATATGCTACTGTA
1 TAAGACCATAGT-TGGGCTATGGCATC-ATGTGATATGTAATA-TGTG
* * *
99733579 TAAGACCATA-TCTGGGATATGGCATCAATGAGATATGTGAT-TCGTG
1 TAAGACCATAGT-TGGGCTATGGCATC-ATGTGATATGTAATAT-GTG
* * *
99733625 TAAGACCATAGTTGGGCTATGGCATTGATATGTGATATGTGATCTGTG
1 TAAGACCATAGTTGGGCTATGGCA-T--CATGTGATATGTAATATGTG
*
99733673 TAAGACCATAGCTGGGCTATGGCATCAT-T-ATATG-AATATGTG
1 TAAGACCATAGTTGGGCTATGGCATCATGTGATATGTAATATGTG
**
99733715 TAAGACCATAGTTGAACTATGGCATCA
1 TAAGACCATAGTTGGGCTATGGCATCA
99733742 AGAAAACGAA
Statistics
Matches: 141, Mismatches: 16, Indels: 17
0.81 0.09 0.10
Matches are distributed among these distances:
42 30 0.21
43 5 0.04
44 1 0.01
45 3 0.02
46 23 0.16
47 39 0.28
48 39 0.28
49 1 0.01
ACGTcount: A:0.30, C:0.14, G:0.25, T:0.31
Consensus pattern (45 bp):
TAAGACCATAGTTGGGCTATGGCATCATGTGATATGTAATATGTG
Found at i:99733738 original size:90 final size:94
Alignment explanation
Indices: 99733560--99733739 Score: 226
Period size: 90 Copynumber: 1.9 Consensus size: 94
99733550 ATGGCATCGG
* * *
99733560 TGTGATATATGCTACTGTATAAGACCATATCTGGGATATGGCATCAATGAGATATGTGATTCGTG
1 TGTGATATATGATACTGTATAAGACCATAGCTGGGATATGGCATCAAT-AGATATGTAATTCGTG
**
99733625 TAAGACCATAGTTGGGCTATGGCATTGATA
65 TAAGACCATAGTTGAACTATGGCATTGATA
* * * *
99733655 TGTGATATGTGAT-CTGTGTAAGACCATAGCTGGGCTATGGCATC-AT-TATATG-AATAT-GTG
1 TGTGATATATGATACTGTATAAGACCATAGCTGGGATATGGCATCAATAGATATGTAAT-TCGTG
99733715 TAAGACCATAGTTGAACTATGGCAT
65 TAAGACCATAGTTGAACTATGGCAT
99733740 CAAGAAAACG
Statistics
Matches: 75, Mismatches: 9, Indels: 7
0.82 0.10 0.08
Matches are distributed among these distances:
90 28 0.37
91 6 0.08
93 2 0.03
94 28 0.37
95 11 0.15
ACGTcount: A:0.29, C:0.13, G:0.25, T:0.33
Consensus pattern (94 bp):
TGTGATATATGATACTGTATAAGACCATAGCTGGGATATGGCATCAATAGATATGTAATTCGTGT
AAGACCATAGTTGAACTATGGCATTGATA
Found at i:99735243 original size:42 final size:42
Alignment explanation
Indices: 99735180--99735306 Score: 172
Period size: 42 Copynumber: 3.0 Consensus size: 42
99735170 CTTCGTCTTC
* *
99735180 TCGATGCCATAG-TTCAACTATGGTCTTACACATATTCACATAA
1 TCGATGCCATAGCCT-AGCTATGGTCTTACACATATTCACAT-A
*
99735223 T-GATGCCATAGCCTAGCTATGGTCTTACACATATTCATATA
1 TCGATGCCATAGCCTAGCTATGGTCTTACACATATTCACATA
99735264 TCGATGCCATAGCCTAGCTATGGTCTTACACGA-A-TCACATA
1 TCGATGCCATAGCCTAGCTATGGTCTTACAC-ATATTCACATA
99735305 TC
1 TC
99735307 TCACTGATGC
Statistics
Matches: 77, Mismatches: 4, Indels: 8
0.87 0.04 0.09
Matches are distributed among these distances:
41 10 0.13
42 64 0.83
43 3 0.04
ACGTcount: A:0.30, C:0.24, G:0.14, T:0.31
Consensus pattern (42 bp):
TCGATGCCATAGCCTAGCTATGGTCTTACACATATTCACATA
Found at i:99735366 original size:47 final size:46
Alignment explanation
Indices: 99735265--99735390 Score: 162
Period size: 47 Copynumber: 2.7 Consensus size: 46
99735255 ATTCATATAT
* * * * * *
99735265 CGATGCCATAGCCTAGCTATGGTCTTACACGAATCACATATCTCAC
1 CGATGCCATATCCCAGATATGGTCTTATACGAAGCACATATCACAC
* * *
99735311 TGATGCCATATCCCAGATATGGTCTTATACAGTAGCATATATCACAC
1 CGATGCCATATCCCAGATATGGTCTTATAC-GAAGCACATATCACAC
99735358 CGATGCCATATCCCAGATATGGTCTTATACGAA
1 CGATGCCATATCCCAGATATGGTCTTATACGAA
99735391 AATCACTTGT
Statistics
Matches: 68, Mismatches: 11, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
46 27 0.40
47 41 0.60
ACGTcount: A:0.30, C:0.26, G:0.16, T:0.28
Consensus pattern (46 bp):
CGATGCCATATCCCAGATATGGTCTTATACGAAGCACATATCACAC
Found at i:99735448 original size:31 final size:31
Alignment explanation
Indices: 99735413--99735592 Score: 290
Period size: 31 Copynumber: 5.8 Consensus size: 31
99735403 CTTGTCACTT
*
99735413 GTAGCCGAAGCTACCACTATTCACTGATCAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
* *
99735444 GTAGCCGGAGCTACCATTTTTCACTGATCAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
*
99735475 GTAGCCGGAGCTACCACTTTTCACTGATCAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
99735506 GTAGCCGTAA-CTACCACTTTTCACTGATCAG
1 GTAGCCG-AAGCTACCACTTTTCACTGATCAG
*
99735537 GTAGCAGAAGCTACCACTTTTCACTGATCAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
*
99735568 GTAGCTGAAGCTACCACTTTTCACT
1 GTAGCCGAAGCTACCACTTTTCACT
99735593 TGTCATTTGT
Statistics
Matches: 140, Mismatches: 7, Indels: 4
0.93 0.05 0.03
Matches are distributed among these distances:
30 2 0.01
31 137 0.98
32 1 0.01
ACGTcount: A:0.26, C:0.28, G:0.19, T:0.27
Consensus pattern (31 bp):
GTAGCCGAAGCTACCACTTTTCACTGATCAG
Found at i:99735676 original size:50 final size:51
Alignment explanation
Indices: 99735574--99735696 Score: 178
Period size: 50 Copynumber: 2.4 Consensus size: 51
99735564 TCAGGTAGCT
* * * *
99735574 GAAGCTACCACTTTTCACTTGTCATTTGTCATTGATCAGATAAGTGTAGCC
1 GAAGCTATCACTTATCACTTGTCATTTGTCATTCATCAGATAAGTGCAGCC
*
99735625 GAAGCTATCACTTATCACTT-TCACTTT-TCCTTCATCAGATAAGTGCAGCC
1 GAAGCTATCACTTATCACTTGTCA-TTTGTCATTCATCAGATAAGTGCAGCC
99735675 GAAGCTATCACTTATCACTTGT
1 GAAGCTATCACTTATCACTTGT
99735697 TGCCATAGTC
Statistics
Matches: 65, Mismatches: 5, Indels: 4
0.88 0.07 0.05
Matches are distributed among these distances:
50 43 0.66
51 22 0.34
ACGTcount: A:0.26, C:0.24, G:0.15, T:0.35
Consensus pattern (51 bp):
GAAGCTATCACTTATCACTTGTCATTTGTCATTCATCAGATAAGTGCAGCC
Found at i:99739194 original size:12 final size:12
Alignment explanation
Indices: 99739177--99739201 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
99739167 ATGAACAAGT
99739177 AAAAATTGAGAA
1 AAAAATTGAGAA
99739189 AAAAATTGAGAA
1 AAAAATTGAGAA
99739201 A
1 A
99739202 TTGAACACAG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.68, C:0.00, G:0.16, T:0.16
Consensus pattern (12 bp):
AAAAATTGAGAA
Found at i:99744243 original size:13 final size:13
Alignment explanation
Indices: 99744225--99744254 Score: 60
Period size: 13 Copynumber: 2.3 Consensus size: 13
99744215 CATGCATTAC
99744225 TACTACTTGATCT
1 TACTACTTGATCT
99744238 TACTACTTGATCT
1 TACTACTTGATCT
99744251 TACT
1 TACT
99744255 CAATTATAGA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.23, C:0.23, G:0.07, T:0.47
Consensus pattern (13 bp):
TACTACTTGATCT
Found at i:99746846 original size:30 final size:31
Alignment explanation
Indices: 99746810--99746893 Score: 88
Period size: 30 Copynumber: 2.8 Consensus size: 31
99746800 TAATCTCAAT
*
99746810 TAGTTGGGTGACCAAATTAAAAAAAAATGG-
1 TAGTTGGGTGACCAAATTAAAAAAAAAGGGA
*
99746840 TAGTT-GGTGACCAAA--AAATAAAAAGGGCAA
1 TAGTTGGGTGACCAAATTAAAAAAAAAGGG--A
*
99746870 TAGTTGGG-GACTAAATTAAAAAAA
1 TAGTTGGGTGACCAAATTAAAAAAA
99746894 TTGATAGTTG
Statistics
Matches: 44, Mismatches: 4, Indels: 10
0.76 0.07 0.17
Matches are distributed among these distances:
27 10 0.23
29 10 0.23
30 16 0.36
31 2 0.05
32 6 0.14
ACGTcount: A:0.49, C:0.07, G:0.23, T:0.21
Consensus pattern (31 bp):
TAGTTGGGTGACCAAATTAAAAAAAAAGGGA
Found at i:99746912 original size:59 final size:60
Alignment explanation
Indices: 99746810--99746941 Score: 162
Period size: 59 Copynumber: 2.2 Consensus size: 60
99746800 TAATCTCAAT
* * *
99746810 TAGTTGGGTGACCAAATTAAAAAAAAATGGTAGTTGGTGACCAAAAAATAAAA-AGGGCAA
1 TAGTTGGGTGACCAAATTAAAAAAAAATGATAGTTGATGACCAAAAAAGAAAATA-GGCAA
* * *
99746870 TAGTTGGG-GACTAAATT-AAAAAAATTGATAGTTGTATGACCAAAAAAGAAAATATGCAA
1 TAGTTGGGTGACCAAATTAAAAAAAAATGATAGTTG-ATGACCAAAAAAGAAAATAGGCAA
*
99746929 TAGTTGAGTGACC
1 TAGTTGGGTGACC
99746942 TATGGTATAG
Statistics
Matches: 61, Mismatches: 8, Indels: 6
0.81 0.11 0.08
Matches are distributed among these distances:
58 15 0.25
59 34 0.56
60 12 0.20
ACGTcount: A:0.46, C:0.08, G:0.22, T:0.23
Consensus pattern (60 bp):
TAGTTGGGTGACCAAATTAAAAAAAAATGATAGTTGATGACCAAAAAAGAAAATAGGCAA
Found at i:99746941 original size:31 final size:29
Alignment explanation
Indices: 99746810--99746941 Score: 78
Period size: 30 Copynumber: 4.4 Consensus size: 29
99746800 TAATCTCAAT
* *
99746810 TAGTTGGGTGACCAAATTAAAAAAAAATG--G
1 TAGTT-GGTGACCAAA--AAAAAAATATGCAA
*
99746840 TAGTTGGTGACCAAAAAATAAAA-AGGGCAA
1 TAGTTGGTGACCAAAAAA-AAAATA-TGCAA
* *
99746870 TAGTTGGGGACTAAATTAAAAAAAT-TG--A
1 TAGTTGGTGACCAAA--AAAAAAATATGCAA
*
99746898 TAGTTGTATGACCAAAAAAGAAAATATGCAA
1 TAGTTG-GTGACCAAAAAA-AAAATATGCAA
99746929 TAGTTGAGTGACC
1 TAGTTG-GTGACC
99746942 TATGGTATAG
Statistics
Matches: 80, Mismatches: 10, Indels: 23
0.71 0.09 0.20
Matches are distributed among these distances:
27 7 0.09
28 17 0.21
29 18 0.22
30 19 0.24
31 16 0.20
32 3 0.04
ACGTcount: A:0.46, C:0.08, G:0.22, T:0.23
Consensus pattern (29 bp):
TAGTTGGTGACCAAAAAAAAAATATGCAA
Found at i:99751826 original size:30 final size:31
Alignment explanation
Indices: 99751782--99751871 Score: 94
Period size: 30 Copynumber: 3.0 Consensus size: 31
99751772 TTAATGATAC
* * *
99751782 ATAAAATATTTTTAAA-ACTTAAATATAATA
1 ATAAATTATATTTAAATAATTAAATATAATA
* *
99751812 ATAAATTATATTTAAATAATTTAATATAATG
1 ATAAATTATATTTAAATAATTAAATATAATA
* * *
99751843 AT-AATGATATTTAAGTAATTTAATATAAT
1 ATAAATTATATTTAAATAATTAAATATAAT
99751872 GATACATAAG
Statistics
Matches: 52, Mismatches: 7, Indels: 2
0.85 0.11 0.03
Matches are distributed among these distances:
30 39 0.75
31 13 0.25
ACGTcount: A:0.52, C:0.01, G:0.03, T:0.43
Consensus pattern (31 bp):
ATAAATTATATTTAAATAATTAAATATAATA
Found at i:99751846 original size:16 final size:16
Alignment explanation
Indices: 99751827--99751875 Score: 50
Period size: 16 Copynumber: 3.2 Consensus size: 16
99751817 TTATATTTAA
99751827 ATAATTTAATATAATG
1 ATAATTTAATATAATG
* *
99751843 ATAA-TGATATTTAA-G
1 ATAATTTA-ATATAATG
99751858 -TAATTTAATATAATG
1 ATAATTTAATATAATG
99751873 ATA
1 ATA
99751876 CATAAGATAT
Statistics
Matches: 25, Mismatches: 4, Indels: 8
0.68 0.11 0.22
Matches are distributed among these distances:
14 8 0.32
15 6 0.24
16 11 0.44
ACGTcount: A:0.49, C:0.00, G:0.08, T:0.43
Consensus pattern (16 bp):
ATAATTTAATATAATG
Done.