Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A06
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 115140250
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2234201 characters in sequence are not A, C, G, or T
File 297 of 345
Found at i:100696248 original size:9 final size:10
Alignment explanation
Indices: 100696224--100696248 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
100696214 CTATTACAAT
100696224 GAAAAAATAA
1 GAAAAAATAA
100696234 GAAAAAATAA
1 GAAAAAATAA
100696244 GAAAA
1 GAAAA
100696249 TATTTTGTGA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.80, C:0.00, G:0.12, T:0.08
Consensus pattern (10 bp):
GAAAAAATAA
Found at i:100699417 original size:41 final size:42
Alignment explanation
Indices: 100699341--100699573 Score: 177
Period size: 41 Copynumber: 5.5 Consensus size: 42
100699331 TCAACATCCT
* * * **
100699341 AGACGTGGTCTTACATGTTATCTCATATCGATGCCACTGTCCC
1 AGACATGGTCTTACACGTAATCAAATA-CGATGCCACTGTCCC
* * *
100699384 AGACAGGGTCTTACTCG-AATCAAATACGATGCCAATGTCCC
1 AGACATGGTCTTACACGTAATCAAATACGATGCCACTGTCCC
* * *
100699425 AGACATGGTCTTACACGTAACCACATGGAATGATGCCAACAT-T-CC
1 AGACATGGTCTTACACGTAATCAAAT---ACGATGCC-AC-TGTCCC
** * * **
100699470 AGATGTCGTCTTACACGTTATCTCATATCGATGCCACTGTCCC
1 AGACATGGTCTTACACGTAATCAAATA-CGATGCCACTGTCCC
* * * *
100699513 AGACATGGTCTTACTCG-AATCAAATATGACGCCAATGTCCC
1 AGACATGGTCTTACACGTAATCAAATACGATGCCACTGTCCC
*
100699554 AGACATGGTCTTACATGTAA
1 AGACATGGTCTTACACGTAA
100699574 CCACATATCA
Statistics
Matches: 147, Mismatches: 33, Indels: 21
0.73 0.16 0.10
Matches are distributed among these distances:
41 57 0.39
42 24 0.16
43 34 0.23
45 29 0.20
46 2 0.01
47 1 0.01
ACGTcount: A:0.28, C:0.27, G:0.18, T:0.27
Consensus pattern (42 bp):
AGACATGGTCTTACACGTAATCAAATACGATGCCACTGTCCC
Found at i:100705705 original size:21 final size:22
Alignment explanation
Indices: 100705659--100705706 Score: 55
Period size: 21 Copynumber: 2.3 Consensus size: 22
100705649 TTCTCTTTTT
** *
100705659 TATTTTTTTATTTTTTATTACG
1 TATTTTTTTATTAATTATTAAG
100705681 -ATTTTTTTA-TAATTATTAAG
1 TATTTTTTTATTAATTATTAAG
100705701 TATTTT
1 TATTTT
100705707 AAGTTATTTA
Statistics
Matches: 22, Mismatches: 3, Indels: 3
0.79 0.11 0.11
Matches are distributed among these distances:
20 8 0.36
21 14 0.64
ACGTcount: A:0.25, C:0.02, G:0.04, T:0.69
Consensus pattern (22 bp):
TATTTTTTTATTAATTATTAAG
Found at i:100706155 original size:16 final size:17
Alignment explanation
Indices: 100706134--100706172 Score: 53
Period size: 16 Copynumber: 2.4 Consensus size: 17
100706124 CGCTTTTAAA
*
100706134 ATTTGTCTATT-TATTT
1 ATTTGTATATTATATTT
*
100706150 ATTTGTATATTATTTTT
1 ATTTGTATATTATATTT
100706167 ATTTGT
1 ATTTGT
100706173 TCTTTGTTCT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
16 10 0.50
17 10 0.50
ACGTcount: A:0.21, C:0.03, G:0.08, T:0.69
Consensus pattern (17 bp):
ATTTGTATATTATATTT
Found at i:100717291 original size:14 final size:14
Alignment explanation
Indices: 100717272--100717298 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
100717262 ATTACCTATA
100717272 AAACAATTTCTCTT
1 AAACAATTTCTCTT
100717286 AAACAATTTCTCT
1 AAACAATTTCTCT
100717299 ATTAAGTTAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.37, C:0.22, G:0.00, T:0.41
Consensus pattern (14 bp):
AAACAATTTCTCTT
Found at i:100719020 original size:19 final size:20
Alignment explanation
Indices: 100718973--100719022 Score: 59
Period size: 19 Copynumber: 2.5 Consensus size: 20
100718963 CAACAGTAAC
100718973 AATTATA-CAATTAAATACT
1 AATTATAGCAATTAAATACT
* *
100718992 AACATATAGCAATTGAAT-CT
1 AA-TTATAGCAATTAAATACT
100719012 AATTATAGCAA
1 AATTATAGCAA
100719023 AAATATACTT
Statistics
Matches: 26, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
19 10 0.38
20 8 0.31
21 8 0.31
ACGTcount: A:0.50, C:0.12, G:0.06, T:0.32
Consensus pattern (20 bp):
AATTATAGCAATTAAATACT
Found at i:100719136 original size:18 final size:18
Alignment explanation
Indices: 100719108--100719143 Score: 56
Period size: 17 Copynumber: 2.0 Consensus size: 18
100719098 AACAAAACAA
100719108 AAAATTCTGGAAAAATATG
1 AAAATTCTGG-AAAATATG
100719127 AAAATT-TGGAAAATATG
1 AAAATTCTGGAAAATATG
100719144 GGTTACACAG
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 8 0.47
18 3 0.18
19 6 0.35
ACGTcount: A:0.53, C:0.03, G:0.17, T:0.28
Consensus pattern (18 bp):
AAAATTCTGGAAAATATG
Found at i:100720456 original size:20 final size:20
Alignment explanation
Indices: 100720431--100720498 Score: 57
Period size: 20 Copynumber: 3.4 Consensus size: 20
100720421 GATGCATAAT
100720431 AGAGGCACCGAAGTGCAGAA
1 AGAGGCACCGAAGTGCAGAA
* * *
100720451 AGAGGCACGGATGTGCA-ATC
1 AGAGGCACCGAAGTGCAGA-A
* * * *
100720471 GGAGGAACCGAAGTGTAGAT
1 AGAGGCACCGAAGTGCAGAA
100720491 AGAGGCAC
1 AGAGGCAC
100720499 TAAAGTGCAA
Statistics
Matches: 35, Mismatches: 11, Indels: 4
0.70 0.22 0.08
Matches are distributed among these distances:
19 1 0.03
20 33 0.94
21 1 0.03
ACGTcount: A:0.35, C:0.18, G:0.37, T:0.10
Consensus pattern (20 bp):
AGAGGCACCGAAGTGCAGAA
Found at i:100720507 original size:40 final size:40
Alignment explanation
Indices: 100720432--100720508 Score: 100
Period size: 40 Copynumber: 1.9 Consensus size: 40
100720422 ATGCATAATA
* * *
100720432 GAGGCACCGAAGTGCAGAAAGAGGCACGGATGTGCAATCG
1 GAGGAACCGAAGTGCAGAAAGAGGCACGAAAGTGCAATCG
* * *
100720472 GAGGAACCGAAGTGTAGATAGAGGCACTAAAGTGCAA
1 GAGGAACCGAAGTGCAGAAAGAGGCACGAAAGTGCAA
100720509 ACCCATGCAA
Statistics
Matches: 31, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
40 31 1.00
ACGTcount: A:0.36, C:0.17, G:0.35, T:0.12
Consensus pattern (40 bp):
GAGGAACCGAAGTGCAGAAAGAGGCACGAAAGTGCAATCG
Found at i:100724609 original size:75 final size:76
Alignment explanation
Indices: 100724462--100724612 Score: 286
Period size: 75 Copynumber: 2.0 Consensus size: 76
100724452 TCAGTTTCCT
*
100724462 TATAATGGAACTTACATAGAGCTTTCATAGCTCACCCCCCTTATGTTCCTTTTCTATAGAGAACT
1 TATAATGGAACTCACATAGAGCTTTCATAGCTCACCCCCCTTATGTTCCTTTTCTATAGAGAACT
100724527 CACAAGGTTAG
66 CACAAGGTTAG
100724538 TATAATGGAACTCACATAGAGCTTTCATAGCTCA-CCCCCTTATGTTCCTTTTCTATAGAGAACT
1 TATAATGGAACTCACATAGAGCTTTCATAGCTCACCCCCCTTATGTTCCTTTTCTATAGAGAACT
100724602 CACAAGGTTAG
66 CACAAGGTTAG
100724613 GATGCGGATG
Statistics
Matches: 74, Mismatches: 1, Indels: 1
0.97 0.01 0.01
Matches are distributed among these distances:
75 41 0.55
76 33 0.45
ACGTcount: A:0.29, C:0.24, G:0.15, T:0.32
Consensus pattern (76 bp):
TATAATGGAACTCACATAGAGCTTTCATAGCTCACCCCCCTTATGTTCCTTTTCTATAGAGAACT
CACAAGGTTAG
Found at i:100726226 original size:31 final size:31
Alignment explanation
Indices: 100726176--100726245 Score: 81
Period size: 31 Copynumber: 2.3 Consensus size: 31
100726166 TTGGTGTACT
** *
100726176 TGTATACATAAAATTTTGATTGTGGTTTAAA
1 TGTATACATAAAACATTGATTGTGATTTAAA
* *
100726207 TGTATTCATAAAACATTGATTTTGATTT-AA
1 TGTATACATAAAACATTGATTGTGATTTAAA
100726237 T-TATACATA
1 TGTATACATA
100726246 TTTAAAGAAA
Statistics
Matches: 33, Mismatches: 6, Indels: 2
0.80 0.15 0.05
Matches are distributed among these distances:
29 7 0.21
30 3 0.09
31 23 0.70
ACGTcount: A:0.37, C:0.06, G:0.11, T:0.46
Consensus pattern (31 bp):
TGTATACATAAAACATTGATTGTGATTTAAA
Found at i:100727128 original size:18 final size:16
Alignment explanation
Indices: 100727107--100727142 Score: 54
Period size: 18 Copynumber: 2.1 Consensus size: 16
100727097 AATAGGACGG
100727107 ATAATAAAAATAATAGTA
1 ATAATAAAAA-AATA-TA
100727125 ATAATAAAAAAATATA
1 ATAATAAAAAAATATA
100727141 AT
1 AT
100727143 GGTAATAATA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
16 4 0.22
17 4 0.22
18 10 0.56
ACGTcount: A:0.69, C:0.00, G:0.03, T:0.28
Consensus pattern (16 bp):
ATAATAAAAAAATATA
Found at i:100727147 original size:22 final size:21
Alignment explanation
Indices: 100727107--100727161 Score: 65
Period size: 22 Copynumber: 2.5 Consensus size: 21
100727097 AATAGGACGG
*
100727107 ATAATAAAAATAATAGTAATA
1 ATAAAAAAAATAATAGTAATA
*
100727128 ATAAAAAAATATAATGGTAATA
1 ATAAAAAAA-ATAATAGTAATA
100727150 ATATTAAAAAAA
1 ATA--AAAAAAA
100727162 GTAAATATAA
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
21 8 0.28
22 14 0.48
23 1 0.03
24 6 0.21
ACGTcount: A:0.67, C:0.00, G:0.05, T:0.27
Consensus pattern (21 bp):
ATAAAAAAAATAATAGTAATA
Found at i:100727269 original size:3 final size:3
Alignment explanation
Indices: 100727263--100727557 Score: 97
Period size: 3 Copynumber: 97.7 Consensus size: 3
100727253 AAGTAATGAA
* *
100727263 AAT AAT AAT AAT AGA- AAC AAT AGT AAT AA- AAGT AAT AAT AA- AAT
1 AAT AAT AAT AAT A-AT AAT AAT AAT AAT AAT AA-T AAT AAT AAT AAT
* * * ** **
100727307 AGAA AAT AAC AAT GAT ACATT AAT AAT AAT AAT ATAT GTGT GCT AAT
1 A-AT AAT AAT AAT AAT A-A-T AAT AAT AAT AAT A-AT -AAT AAT AAT
* * * * * * *
100727354 AAT AAT AAC AAT -AT AAA AAA AAG AGAA AAT AAT ACT -AT ATT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT A-AT AAT AAT AAT AAT AAT AAT
* * * * *
100727398 AAA AAT AAT AAT AGT AGGTT AAT AAT AAT AGT AAT AAA AAGGT AA- AAT
1 AAT AAT AAT AAT AAT A--AT AAT AAT AAT AAT AAT AAT AA--T AAT AAT
* * * ** * *
100727446 AAT AAT AA- AAT AAT AA- AAC ACT -AT TAT GTT ACT ACT AAT AAT AA-
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
* * * * *
100727490 AAA AAC AGT AAT AGT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAC
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
* *
100727538 AAT AAT AAT ATT AAA AAT AA
1 AAT AAT AAT AAT AAT AAT AA
100727558 CATTCTCTCC
Statistics
Matches: 216, Mismatches: 54, Indels: 44
0.69 0.17 0.14
Matches are distributed among these distances:
2 17 0.08
3 181 0.84
4 12 0.06
5 6 0.03
ACGTcount: A:0.61, C:0.04, G:0.06, T:0.28
Consensus pattern (3 bp):
AAT
Found at i:100727462 original size:19 final size:19
Alignment explanation
Indices: 100727417--100727463 Score: 51
Period size: 19 Copynumber: 2.4 Consensus size: 19
100727407 AATAGTAGGT
*
100727417 TAATAATAATAGTAATAAAA
1 TAATAA-AATAATAATAAAA
*
100727437 -AGGTAAAATAATAATAAAA
1 TA-ATAAAATAATAATAAAA
100727456 TAATAAAA
1 TAATAAAA
100727464 CACTATTATG
Statistics
Matches: 22, Mismatches: 3, Indels: 5
0.73 0.10 0.17
Matches are distributed among these distances:
19 18 0.82
20 4 0.18
ACGTcount: A:0.68, C:0.00, G:0.06, T:0.26
Consensus pattern (19 bp):
TAATAAAATAATAATAAAA
Found at i:100728023 original size:12 final size:12
Alignment explanation
Indices: 100728006--100728047 Score: 52
Period size: 12 Copynumber: 3.7 Consensus size: 12
100727996 AGTGGGGTGA
*
100728006 TTTAGTGGTTAG
1 TTTAGTGGTTGG
100728018 TTTAGTGG--GG
1 TTTAGTGGTTGG
*
100728028 TGTAGTGGTTGG
1 TTTAGTGGTTGG
100728040 TTTAGTGG
1 TTTAGTGG
100728048 GGTGTTAATT
Statistics
Matches: 25, Mismatches: 3, Indels: 4
0.78 0.09 0.12
Matches are distributed among these distances:
10 8 0.32
12 17 0.68
ACGTcount: A:0.12, C:0.00, G:0.43, T:0.45
Consensus pattern (12 bp):
TTTAGTGGTTGG
Found at i:100728036 original size:22 final size:22
Alignment explanation
Indices: 100727994--100728052 Score: 82
Period size: 22 Copynumber: 2.5 Consensus size: 22
100727984 GGTGATAGAG
100727994 TTAGTGGGGTGATTTAGTGGTTAGT
1 TTAGTGGGGTG---TAGTGGTTAGT
*
100728019 TTAGTGGGGTGTAGTGGTTGGT
1 TTAGTGGGGTGTAGTGGTTAGT
100728041 TTAGTGGGGTGT
1 TTAGTGGGGTGT
100728053 TAATTGGACT
Statistics
Matches: 33, Mismatches: 1, Indels: 3
0.89 0.03 0.08
Matches are distributed among these distances:
22 22 0.67
25 11 0.33
ACGTcount: A:0.12, C:0.00, G:0.46, T:0.42
Consensus pattern (22 bp):
TTAGTGGGGTGTAGTGGTTAGT
Found at i:100728553 original size:45 final size:48
Alignment explanation
Indices: 100728498--100728593 Score: 121
Period size: 46 Copynumber: 2.1 Consensus size: 48
100728488 TTAATATTTA
100728498 AAAAT-AAAAAATAATAAAATTT-AT-TTTTAAAAATT-AAA-ATTAATT
1 AAAATAAAAAAAT-AT-AAATTTAATATTTTAAAAATTAAAATATTAATT
* *
100728543 AAAATAAAAAAATATAATTTTAATATTTTAAAATTTAAAATATTAATT
1 AAAATAAAAAAATATAAATTTAATATTTTAAAAATTAAAATATTAATT
100728591 AAA
1 AAA
100728594 TGCTGATATG
Statistics
Matches: 44, Mismatches: 2, Indels: 7
0.83 0.04 0.13
Matches are distributed among these distances:
44 5 0.11
45 9 0.20
46 17 0.39
47 3 0.07
48 10 0.23
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (48 bp):
AAAATAAAAAAATATAAATTTAATATTTTAAAAATTAAAATATTAATT
Found at i:100728658 original size:26 final size:26
Alignment explanation
Indices: 100728622--100728672 Score: 102
Period size: 26 Copynumber: 2.0 Consensus size: 26
100728612 ATGACAATAA
100728622 AAAAAAATATAAATTGAATGATTAAT
1 AAAAAAATATAAATTGAATGATTAAT
100728648 AAAAAAATATAAATTGAATGATTAA
1 AAAAAAATATAAATTGAATGATTAA
100728673 AAGAGGTGAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.63, C:0.00, G:0.08, T:0.29
Consensus pattern (26 bp):
AAAAAAATATAAATTGAATGATTAAT
Found at i:100729467 original size:20 final size:20
Alignment explanation
Indices: 100729442--100729484 Score: 77
Period size: 20 Copynumber: 2.1 Consensus size: 20
100729432 ATAAGAGTCT
*
100729442 AAAAAAAATGTTAATAATGG
1 AAAAAAAATGTTAATAATAG
100729462 AAAAAAAATGTTAATAATAG
1 AAAAAAAATGTTAATAATAG
100729482 AAA
1 AAA
100729485 CCTTTCGCCT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.65, C:0.00, G:0.12, T:0.23
Consensus pattern (20 bp):
AAAAAAAATGTTAATAATAG
Found at i:100747407 original size:70 final size:71
Alignment explanation
Indices: 100747287--100747436 Score: 232
Period size: 70 Copynumber: 2.1 Consensus size: 71
100747277 GGGGAATCAT
* *
100747287 CACTTAGCAACCCCTCGGGGGAATCAGCACATAGCAACCCCCTTTTCATTTCAAATATACAATGG
1 CACTTAGCAACCCCTCGGGGGAATCAGCACATAGCAACCCCCTTTACATTTCAAAGATACAATGG
100747352 ATATCG
66 ATATCG
***
100747358 CACTTAGCAACCCCTC-GGGGAATCAGCACATAGCAA-CCCCTTTCACATTTCAAAGATATGGTG
1 CACTTAGCAACCCCTCGGGGGAATCAGCACATAGCAACCCCCTTT-ACATTTCAAAGATACAATG
100747421 GATATCG
65 GATATCG
100747428 CACTTAGCA
1 CACTTAGCA
100747437 CCACCAATGA
Statistics
Matches: 73, Mismatches: 5, Indels: 3
0.90 0.06 0.04
Matches are distributed among these distances:
69 7 0.10
70 50 0.68
71 16 0.22
ACGTcount: A:0.31, C:0.29, G:0.17, T:0.23
Consensus pattern (71 bp):
CACTTAGCAACCCCTCGGGGGAATCAGCACATAGCAACCCCCTTTACATTTCAAAGATACAATGG
ATATCG
Found at i:100747540 original size:104 final size:102
Alignment explanation
Indices: 100747357--100747578 Score: 356
Period size: 104 Copynumber: 2.2 Consensus size: 102
100747347 AATGGATATC
100747357 GCACTTAGCAACCCCTCGGGGAATCAGCACATAGCAACCCCTTTCACATTTCAAAGATATGGTGG
1 GCACTTAGCAACCCCTCGGGGAATCAGCACATAGCAACCCCTTTCACATTTCAAAGATATGGTGG
* *
100747422 ATATCGCACTTAGCACCACCAATGAACCGGGGAATCA
66 ATATCGCACATAGCACCACCAATAAACCGGGGAATCA
100747459 GCACTTAGCAACCCCTCGGGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATATGGT
1 GCACTTAGCAACCCCTC-GGGGAATCAGCACATAGCAA-CCCCTTTCACATTTCAAAGATATGGT
* *
100747524 GGATCA-CGCACATAGCACCACCCATAAATCGGGGAATCA
64 GGAT-ATCGCACATAGCACCACCAATAAACCGGGGAATCA
**
100747563 GCACACAGCAACCCCT
1 GCACTTAGCAACCCCT
100747579 TTTATATACA
Statistics
Matches: 111, Mismatches: 6, Indels: 4
0.92 0.05 0.03
Matches are distributed among these distances:
102 17 0.15
103 20 0.18
104 73 0.66
105 1 0.01
ACGTcount: A:0.32, C:0.32, G:0.19, T:0.18
Consensus pattern (102 bp):
GCACTTAGCAACCCCTCGGGGAATCAGCACATAGCAACCCCTTTCACATTTCAAAGATATGGTGG
ATATCGCACATAGCACCACCAATAAACCGGGGAATCA
Found at i:100747940 original size:29 final size:29
Alignment explanation
Indices: 100747907--100747970 Score: 76
Period size: 30 Copynumber: 2.2 Consensus size: 29
100747897 TAATCCACCA
100747907 CCCAACTTTTTG-AAAATTACAATTTTGCC
1 CCCAAC-TTTTGCAAAATTACAATTTTGCC
* * *
100747936 CCCAAACTTTTGCATAATTACACTTTTGTC
1 CCC-AACTTTTGCAAAATTACAATTTTGCC
100747966 CCCAA
1 CCCAA
100747971 GCTCGGAAAT
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
29 10 0.33
30 20 0.67
ACGTcount: A:0.30, C:0.28, G:0.06, T:0.36
Consensus pattern (29 bp):
CCCAACTTTTGCAAAATTACAATTTTGCC
Found at i:100747944 original size:30 final size:30
Alignment explanation
Indices: 100747914--100747970 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
100747904 CCACCCAACT
100747914 TTTTG-AAAATTACAATTTTGCCCCCAAAC
1 TTTTGCAAAATTACAATTTTGCCCCCAAAC
* * *
100747943 TTTTGCATAATTACACTTTTGTCCCCAA
1 TTTTGCAAAATTACAATTTTGCCCCCAA
100747971 GCTCGGAAAT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
29 5 0.21
30 19 0.79
ACGTcount: A:0.30, C:0.25, G:0.07, T:0.39
Consensus pattern (30 bp):
TTTTGCAAAATTACAATTTTGCCCCCAAAC
Found at i:100758348 original size:46 final size:46
Alignment explanation
Indices: 100758217--100758467 Score: 212
Period size: 46 Copynumber: 5.3 Consensus size: 46
100758207 TGTCACATAT
* * *
100758217 TATATACTTTCACA-TCATTCACCATCGGGCCATAGGCCTATTATCAACAA
1 TATACACTTTCACATTCA-TCA-CATC-GGCCTTAGGCCTA-TATCAA-TA
* *
100758267 TATACACTTTTCACATTCATTCACATCGGCATTAGGCCTATAGTCACGTA
1 TATACAC-TTTCACATTCA-TCACATCGGCCTTAGGCCTATA-TCA-ATA
*
100758317 -ATACACTTTCACATTCAT-ACATCGGCCTTAGGCCTTTATCAATA
1 TATACACTTTCACATTCATCACATCGGCCTTAGGCCTATATCAATA
* * *
100758361 TTATACAATTTCACATTCATCACATC-GCCATTAGGCCTTTCTAACATATA
1 -TATACACTTTCACATTCATCACATCGGCC-TTAGGCC--TATATCA-ATA
100758411 TATACACTTTCACATTCATC-CATTCGGCCATT-GG-CTA-ATCACATA
1 TATACACTTTCACATTCATCACA-TCGGCC-TTAGGCCTATATCA-ATA
100758456 TATACACTTTCA
1 TATACACTTTCA
100758468 ACTTCATTCA
Statistics
Matches: 173, Mismatches: 15, Indels: 31
0.79 0.07 0.14
Matches are distributed among these distances:
44 2 0.01
45 21 0.12
46 39 0.23
47 13 0.08
48 14 0.08
49 36 0.21
50 30 0.17
51 11 0.06
52 7 0.04
ACGTcount: A:0.30, C:0.27, G:0.09, T:0.34
Consensus pattern (46 bp):
TATACACTTTCACATTCATCACATCGGCCTTAGGCCTATATCAATA
Found at i:100758393 original size:93 final size:99
Alignment explanation
Indices: 100758222--100758398 Score: 251
Period size: 93 Copynumber: 1.8 Consensus size: 99
100758212 CATATTATAT
*
100758222 ACTTTCACATCATTCACCATCGGGCCATAGGCCTATTATCAACAATATACACTTTTCACATTCAT
1 ACTTTCACATCATTCACCATCGGGCCATAGGCCTATTATCAACAATATACACATTTCACATTCAT
*
100758287 TCACATCGGCATTAGGCCTATAGTCACGTAATAC
66 TCACATCGCCATTAGGCCTATAGTCACGTAATAC
* * *
100758321 ACTTTCACATTCA-T-A-CATC-GGCCTTAGGCCT-TTATCAATATTATACA-ATTTCACATTCA
1 ACTTTCACA-TCATTCACCATCGGGCCATAGGCCTATTATCAACAATATACACATTTCACATTCA
100758380 -TCACATCGCCATTAGGCCT
65 TTCACATCGCCATTAGGCCT
100758399 TTCTAACATA
Statistics
Matches: 72, Mismatches: 5, Indels: 8
0.85 0.06 0.09
Matches are distributed among these distances:
93 18 0.25
94 11 0.15
95 14 0.19
96 11 0.15
97 4 0.06
98 1 0.01
99 10 0.14
100 3 0.04
ACGTcount: A:0.29, C:0.28, G:0.10, T:0.32
Consensus pattern (99 bp):
ACTTTCACATCATTCACCATCGGGCCATAGGCCTATTATCAACAATATACACATTTCACATTCAT
TCACATCGCCATTAGGCCTATAGTCACGTAATAC
Found at i:100758416 original size:95 final size:97
Alignment explanation
Indices: 100758211--100758477 Score: 254
Period size: 95 Copynumber: 2.8 Consensus size: 97
100758201 TCGGCCTGTC
*
100758211 ACATAT-TATATACTTTCACA-TCATTCACCATCGGGCCATAGGCCTATTATCAACAATATACAC
1 ACATATATATACACTTTCACATTCA-T-A-CATC-GGCCATAGGCCTATTATCAACAATATACAC
* *
100758274 TTTTCACATTCATTCACATCGGCATTAGGCCTATAG
62 ATTTCACATTCATTCACATCGCCATTAGGCCTATAG
* ** * * *
100758310 TCACGTA-ATACACTTTCACATTCATACATCGGCCTTAGGCCT-TTATCAATATTATACA-ATTT
1 ACATATATATACACTTTCACATTCATACATCGGCCATAGGCCTATTATCAACAATATACACATTT
*
100758372 CACATTCA-TCACATCGCCATTAGGCCTTTCTA-
66 CACATTCATTCACATCGCCATTAGGCC--TATAG
* *
100758404 ACATATATATACACTTTCACATTCATCCATTCGGCCATTGG-CTA--ATC-ACATATATACAC-T
1 ACATATATATACACTTTCACATTCATACA-TCGGCCATAGGCCTATTATCAACA-ATATACACAT
100758464 TTCA-ACTTCATTCA
64 TTCACA-TTCATTCA
100758478 AAACATCGGC
Statistics
Matches: 139, Mismatches: 18, Indels: 26
0.76 0.10 0.14
Matches are distributed among these distances:
93 20 0.14
94 33 0.24
95 42 0.30
96 20 0.14
97 4 0.03
98 1 0.01
99 16 0.12
100 3 0.02
ACGTcount: A:0.31, C:0.27, G:0.08, T:0.34
Consensus pattern (97 bp):
ACATATATATACACTTTCACATTCATACATCGGCCATAGGCCTATTATCAACAATATACACATTT
CACATTCATTCACATCGCCATTAGGCCTATAG
Found at i:100762135 original size:37 final size:39
Alignment explanation
Indices: 100762070--100762177 Score: 130
Period size: 40 Copynumber: 2.8 Consensus size: 39
100762060 ATACACGTCA
* *
100762070 CAGCATGATTGCTCTTTCGGGACCTAGCCCGGAT-ATACC
1 CAGCATGAATGCTC-TTCGGGACTTAGCCCGGATAATACC
* *
100762109 CAGCA-GAATGCTCTTCGGAACTTAGCCCGGATACATACT
1 CAGCATGAATGCTCTTCGGGACTTAGCCCGGATA-ATACC
* *
100762148 AAGCATGTATGCTCTTCGGGACTTAGCCCG
1 CAGCATGAATGCTCTTCGGGACTTAGCCCG
100762178 CGGATTTAGT
Statistics
Matches: 59, Mismatches: 7, Indels: 5
0.83 0.10 0.07
Matches are distributed among these distances:
37 17 0.29
38 7 0.12
39 13 0.22
40 22 0.37
ACGTcount: A:0.23, C:0.29, G:0.23, T:0.25
Consensus pattern (39 bp):
CAGCATGAATGCTCTTCGGGACTTAGCCCGGATAATACC
Found at i:100762245 original size:39 final size:39
Alignment explanation
Indices: 100762161--100762299 Score: 122
Period size: 39 Copynumber: 3.5 Consensus size: 39
100762151 CATGTATGCT
* * *
100762161 CTTCGGGACTTAGCCCGCGGATTTAGTAACTCGCACAATGGGC
1 CTTCGGGACTTAG-CC-CGGAATTAGT-ATTCGCACAA-AGGC
100762204 CTTCGGG-CTTAGCCCGGAATTAGTATTCGCACAAAGTGC
1 CTTCGGGACTTAGCCCGGAATTAGTATTCGCACAAAG-GC
* * * * *
100762243 CTTC--GATTTAGTCCGGAATATGGACATTAGCACAAAGGC
1 CTTCGGGACTTAGCCCGGAAT-TAG-TATTCGCACAAAGGC
100762282 CTTCGGGACTTAGCCCGG
1 CTTCGGGACTTAGCCCGG
100762300 CATATATTCG
Statistics
Matches: 80, Mismatches: 10, Indels: 14
0.77 0.10 0.13
Matches are distributed among these distances:
37 1 0.01
38 12 0.15
39 23 0.29
40 20 0.25
41 12 0.15
42 5 0.06
43 7 0.09
ACGTcount: A:0.23, C:0.26, G:0.27, T:0.24
Consensus pattern (39 bp):
CTTCGGGACTTAGCCCGGAATTAGTATTCGCACAAAGGC
Found at i:100772390 original size:26 final size:26
Alignment explanation
Indices: 100772355--100772405 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
100772345 AAGGTGAAAG
*
100772355 GGGGTTGCTATGTGCTGATCCCCCGA
1 GGGGTTGCTAAGTGCTGATCCCCCGA
*
100772381 GGGGTTGCTAAGTGCTGATTCCCCG
1 GGGGTTGCTAAGTGCTGATCCCCCG
100772406 GTTCATTGGT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.12, C:0.25, G:0.35, T:0.27
Consensus pattern (26 bp):
GGGGTTGCTAAGTGCTGATCCCCCGA
Found at i:100772473 original size:102 final size:103
Alignment explanation
Indices: 100772291--100772499 Score: 318
Period size: 103 Copynumber: 2.0 Consensus size: 103
100772281 GGGTTGCCGT
* *
100772291 GTGCTGATTCCCGATTTATGGTGGTGCTATGTGCGTGATCCACCATATCTTTGAAAGGTGAAAGG
1 GTGCTGATTCCCGATTCATGGTGGTGCTAAGTGCGTGATCCACCATATCTTTGAAAGGTGAAAGG
*
100772356 GGGTTGCTATGTGCTGA-TCCCCCGAGGGGTTGC-TAA
66 GGGTTGCTATGTGCTGATTCCCCCAAGGGGTTGCTTAA
* *
100772392 GTGCTGATTCCCCGGTTCATTGGTGGTGCTAAGTGCGAT-ATCCACCATATC-TTGAAATGTGAA
1 GTGCTGATT-CCCGATTCA-TGGTGGTGCTAAGTGCG-TGATCCACCATATCTTTGAAAGGTGAA
100772455 AGGGGGTTGCTATGTGCTGATTCCCCCAAGGGGTTGCTTAA
63 AGGGGGTTGCTATGTGCTGATTCCCCCAAGGGGTTGCTTAA
100772496 GTGC
1 GTGC
100772500 GATATCCATT
Statistics
Matches: 98, Mismatches: 5, Indels: 7
0.89 0.05 0.06
Matches are distributed among these distances:
101 9 0.09
102 38 0.39
103 43 0.44
104 8 0.08
ACGTcount: A:0.19, C:0.20, G:0.31, T:0.31
Consensus pattern (103 bp):
GTGCTGATTCCCGATTCATGGTGGTGCTAAGTGCGTGATCCACCATATCTTTGAAAGGTGAAAGG
GGGTTGCTATGTGCTGATTCCCCCAAGGGGTTGCTTAA
Found at i:100772532 original size:72 final size:72
Alignment explanation
Indices: 100772418--100772570 Score: 222
Period size: 72 Copynumber: 2.1 Consensus size: 72
100772408 TCATTGGTGG
*
100772418 TGCTAAGTGCGATATCCACCATATCTTGAAATGTGAAAGGGGGTTGCTATG-TGCTGATTCCCCC
1 TGCTAAGTGCGATATCCACCATATCTTGAAATGTAAAAGGGGGTTGCTATGTTGCTGATTCCCCC
100772482 AAGGGGT
66 AAGGGGT
**
100772489 TGCTTAAGTGCGATATCCATTGTATAT-TTGAAATG-AAAAGGGGGTTGCTATGTTGCTGATTCC
1 TGC-TAAGTGCGATATCCA--CCATATCTTGAAATGTAAAAGGGGGTTGCTATGTTGCTGATTCC
*
100772552 CCCGAGGGGT
63 CCCAAGGGGT
100772562 TGCTAAGTG
1 TGCTAAGTG
100772571 ATGATTCCCC
Statistics
Matches: 74, Mismatches: 4, Indels: 7
0.87 0.05 0.08
Matches are distributed among these distances:
71 3 0.04
72 37 0.50
73 30 0.41
74 4 0.05
ACGTcount: A:0.24, C:0.17, G:0.29, T:0.31
Consensus pattern (72 bp):
TGCTAAGTGCGATATCCACCATATCTTGAAATGTAAAAGGGGGTTGCTATGTTGCTGATTCCCCC
AAGGGGT
Found at i:100785951 original size:28 final size:30
Alignment explanation
Indices: 100785920--100785993 Score: 98
Period size: 30 Copynumber: 2.5 Consensus size: 30
100785910 GTTGTGAGAT
* *
100785920 TGGCACTAAGTGT-CGGGCTTGAAA-TGCA
1 TGGCACTAAGTGTGCGAGCTTGAAAGTACA
* *
100785948 TGGCACTAAGTGTGCGAGTTTTAAAGTACA
1 TGGCACTAAGTGTGCGAGCTTGAAAGTACA
100785978 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
100785994 TGGTTGATTA
Statistics
Matches: 40, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
28 13 0.32
29 8 0.20
30 19 0.47
ACGTcount: A:0.26, C:0.16, G:0.31, T:0.27
Consensus pattern (30 bp):
TGGCACTAAGTGTGCGAGCTTGAAAGTACA
Found at i:100786402 original size:37 final size:38
Alignment explanation
Indices: 100786303--100786436 Score: 125
Period size: 40 Copynumber: 3.5 Consensus size: 38
100786293 TCGAATGATG
* *
100786303 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAC-CAT
1 TCCGGGCTAAGT-CCGAA-GCATTTGTGCGAAGT-ACTAAT
*
100786342 ATCCGGACTAAGATCCGAAGCATTTGTGCGAAGTACTAAT
1 -TCCGGGCTAAG-TCCGAAGCATTTGTGCGAAGTACTAAT
* *
100786382 TCCGGGCTAAG-CCGAAGCATTGGTGCG-AGTTACTAAA
1 TCCGGGCTAAGTCCGAAGCATTTGTGCGAAG-TACTAAT
100786419 TCC-GGCTAAGTCCCGAAG
1 TCCGGGCTAAGT-CCGAAG
100786437 AGCATTCATG
Statistics
Matches: 82, Mismatches: 6, Indels: 14
0.80 0.06 0.14
Matches are distributed among these distances:
36 9 0.11
37 24 0.29
38 6 0.07
39 14 0.17
40 28 0.34
41 1 0.01
ACGTcount: A:0.26, C:0.24, G:0.27, T:0.23
Consensus pattern (38 bp):
TCCGGGCTAAGTCCGAAGCATTTGTGCGAAGTACTAAT
Found at i:100786516 original size:40 final size:39
Alignment explanation
Indices: 100786418--100786532 Score: 158
Period size: 39 Copynumber: 2.9 Consensus size: 39
100786408 GAGTTACTAA
* *
100786418 ATCCGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
1 ATCCGGCTAAGTCCCGAAGAGCATTCATGCTGGTGATAT
* * *
100786457 ATCCGGCTAAGTTCCGAAGAGCATTCGTGCTGGTGTTAT
1 ATCCGGCTAAGTCCCGAAGAGCATTCATGCTGGTGATAT
* *
100786496 ATCCGGGCTAGGTCCCGAAGAGCAATCATGCTGGTGA
1 ATCC-GGCTAAGTCCCGAAGAGCATTCATGCTGGTGA
100786533 CGTGTATTCG
Statistics
Matches: 65, Mismatches: 10, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
39 38 0.58
40 27 0.42
ACGTcount: A:0.23, C:0.23, G:0.29, T:0.25
Consensus pattern (39 bp):
ATCCGGCTAAGTCCCGAAGAGCATTCATGCTGGTGATAT
Found at i:100790163 original size:47 final size:47
Alignment explanation
Indices: 100790097--100790433 Score: 548
Period size: 47 Copynumber: 7.1 Consensus size: 47
100790087 GAAATGATAG
100790097 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
100790144 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGA
100790193 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGA
*
100790242 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATACGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
100790289 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
100790336 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
* * * * * * * *
100790383 CAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATAAATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
100790430 TAAG
1 TAAG
100790434 TCCCGAAGGG
Statistics
Matches: 274, Mismatches: 14, Indels: 4
0.94 0.05 0.01
Matches are distributed among these distances:
47 178 0.65
49 96 0.35
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.28
Consensus pattern (47 bp):
TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
Found at i:100790608 original size:37 final size:37
Alignment explanation
Indices: 100790552--100790630 Score: 113
Period size: 37 Copynumber: 2.1 Consensus size: 37
100790542 CCGAGCTCTA
* * * *
100790552 AAGACCCGATGACTACGTGTGGGGATTTTTTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
*
100790589 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
100790626 AAGAC
1 AAGAC
100790631 TTCGTAATAA
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.24, C:0.19, G:0.30, T:0.27
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:100808306 original size:13 final size:13
Alignment explanation
Indices: 100808288--100808312 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
100808278 ATTTTGCTTT
100808288 TTTTGTTTTTTTA
1 TTTTGTTTTTTTA
100808301 TTTTGTTTTTTT
1 TTTTGTTTTTTT
100808313 GTATGTTGTT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.04, C:0.00, G:0.08, T:0.88
Consensus pattern (13 bp):
TTTTGTTTTTTTA
Found at i:100809426 original size:91 final size:90
Alignment explanation
Indices: 100809291--100809594 Score: 303
Period size: 91 Copynumber: 3.3 Consensus size: 90
100809281 AATTTACCAT
* * * * * *
100809291 TTTCAAACATCATTTTAATCGCCTTTAAACATCATCAAAGCATACAATCAGACACTATAATTTTC
1 TTTCGAACATCATTTAAATCACATTTAAGCATCATCAAAGCATACAATCAGACACCATAATTTTC
*
100809356 AGAAATTAAAATTTACATTTAACAAC
66 AGAAATTAAAATATA-ATTTAACAAC
*
100809382 TTTCGAACATCATTTAAATCACATTTAAGCATCATCAACA-CATACATTC-GAACACCATAA-TT
1 TTTCGAACATCATTTAAATCACATTTAAGCATCATCAA-AGCATACAATCAG-ACACCATAATTT
* * *
100809444 TCTGACAATTAAAATGATAAATTAACATAT
64 TCAGA-AATTAAAAT-ATAATTTAACA-AC
* * * * * *
100809474 TTTAG-ACATCATTTAAATCATC-TTTGAGTATCATTAAAGAATACAATTAGACACCATAATTTT
1 TTTCGAACATCATTTAAATCA-CATTTAAGCATCATCAAAGCATACAATCAGACACCATAATTTT
* * * *
100809537 TAGCAATTAAAACTGTAATTTAACCAC
65 CAGAAATTAAAA-TATAATTTAACAAC
*
100809564 TTTCGAACATCACTTAAATCACATTTAAGCA
1 TTTCGAACATCATTTAAATCACATTTAAGCA
100809595 ACACATTTCG
Statistics
Matches: 172, Mismatches: 29, Indels: 24
0.76 0.13 0.11
Matches are distributed among these distances:
90 14 0.08
91 143 0.83
92 15 0.09
ACGTcount: A:0.42, C:0.19, G:0.06, T:0.33
Consensus pattern (90 bp):
TTTCGAACATCATTTAAATCACATTTAAGCATCATCAAAGCATACAATCAGACACCATAATTTTC
AGAAATTAAAATATAATTTAACAAC
Found at i:100810297 original size:96 final size:96
Alignment explanation
Indices: 100810189--100810465 Score: 298
Period size: 96 Copynumber: 3.0 Consensus size: 96
100810179 TATTTAGTAA
100810189 ATCATAATCAAATATCAATTCACTAAATATATCAAATTATAATTTATCATATTCAATTTATAAAT
1 ATCATAATCAAATATCAATTCACTAAATATATCAAATTATAATTTATCATATTCAATTTATAAAT
* *
100810254 CACTTTATCATTTCTTTATGATTTAGTCCAT
66 CAATTTATCATTTCTTTATGATTTAGTCTAT
* * * *
100810285 ATCATAATCAAATATC---T--C-AAA-CTAT-AATTTATCAA-AT-TCA-ATT---TAT--AAA
1 ATCATAATCAAATATCAATTCACTAAATATATCAAATTAT-AATTTATCATATTCAATTTATAAA
* * *
100810334 TGAATTTATCGTTTCTTTATGATTTAATCTAT
65 TCAATTTATCATTTCTTTATGATTTAGTCTAT
* * * **
100810366 ATCATAAGCAAATATTAATTCACTAAATATCTCAAATTGCAATTTATCATATTCAATTTATAAAT
1 ATCATAATCAAATATCAATTCACTAAATATATCAAATTATAATTTATCATATTCAATTTATAAAT
*
100810431 CAATTTATCATTTCTTTATGGTTTAGTCTAT
66 CAATTTATCATTTCTTTATGATTTAGTCTAT
100810462 ATCA
1 ATCA
100810466 CACCTTTTTG
Statistics
Matches: 142, Mismatches: 22, Indels: 34
0.72 0.11 0.17
Matches are distributed among these distances:
81 44 0.31
83 2 0.01
84 1 0.01
86 4 0.03
87 6 0.04
88 11 0.08
89 10 0.07
90 6 0.04
91 4 0.03
93 1 0.01
94 2 0.01
96 51 0.36
ACGTcount: A:0.39, C:0.14, G:0.04, T:0.44
Consensus pattern (96 bp):
ATCATAATCAAATATCAATTCACTAAATATATCAAATTATAATTTATCATATTCAATTTATAAAT
CAATTTATCATTTCTTTATGATTTAGTCTAT
Found at i:100810311 original size:81 final size:81
Alignment explanation
Indices: 100810213--100810380 Score: 255
Period size: 81 Copynumber: 2.1 Consensus size: 81
100810203 TCAATTCACT
* * *
100810213 AAATATATCAAATTATAATTTATCATATTCAATTTATAAATCACTTTATCATTTCTTTATGATTT
1 AAATATATCAAACTATAATTTATCAAATTCAATTTATAAATCAATTTATCATTTCTTTATGATTT
* *
100810278 AGTCCATATCATAATC
66 AATCCATATCATAAGC
* * *
100810294 AAATATCTCAAACTATAATTTATCAAATTCAATTTATAAATGAATTTATCGTTTCTTTATGATTT
1 AAATATATCAAACTATAATTTATCAAATTCAATTTATAAATCAATTTATCATTTCTTTATGATTT
*
100810359 AATCTATATCATAAGC
66 AATCCATATCATAAGC
100810375 AAATAT
1 AAATAT
100810381 TAATTCACTA
Statistics
Matches: 78, Mismatches: 9, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
81 78 1.00
ACGTcount: A:0.40, C:0.12, G:0.04, T:0.44
Consensus pattern (81 bp):
AAATATATCAAACTATAATTTATCAAATTCAATTTATAAATCAATTTATCATTTCTTTATGATTT
AATCCATATCATAAGC
Found at i:100814770 original size:36 final size:36
Alignment explanation
Indices: 100814730--100814798 Score: 129
Period size: 36 Copynumber: 1.9 Consensus size: 36
100814720 CTTCATGGAT
*
100814730 CTCAAAAAAATAAAGAACATTAAAAATGGGGCTAGG
1 CTCAAAAAAATAAAGAACATTAAAAATAGGGCTAGG
100814766 CTCAAAAAAATAAAGAACATTAAAAATAGGGCT
1 CTCAAAAAAATAAAGAACATTAAAAATAGGGCT
100814799 GGGGAACACT
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
36 32 1.00
ACGTcount: A:0.55, C:0.12, G:0.16, T:0.17
Consensus pattern (36 bp):
CTCAAAAAAATAAAGAACATTAAAAATAGGGCTAGG
Found at i:100816847 original size:21 final size:22
Alignment explanation
Indices: 100816806--100816847 Score: 52
Period size: 23 Copynumber: 1.9 Consensus size: 22
100816796 GGATTGCTTT
100816806 TGATTTTTCTTTAAAGTTTTACA
1 TGATTTTTCTTTAAAG-TTTACA
100816829 TGATTTCTT-TTTAAA-TTTA
1 TGATTT-TTCTTTAAAGTTTA
100816848 TTTGATTCAA
Statistics
Matches: 18, Mismatches: 0, Indels: 4
0.82 0.00 0.18
Matches are distributed among these distances:
21 4 0.22
23 12 0.67
24 2 0.11
ACGTcount: A:0.26, C:0.07, G:0.07, T:0.60
Consensus pattern (22 bp):
TGATTTTTCTTTAAAGTTTACA
Found at i:100821471 original size:26 final size:26
Alignment explanation
Indices: 100821423--100821473 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
100821413 ACATGCTAGA
*
100821423 AAATGAAAGCCTTTGTGATGTATCTG
1 AAATGAAAGCCTTTGTGACGTATCTG
* *
100821449 AAATGGAAGCCTTTGTGGCGTATCT
1 AAATGAAAGCCTTTGTGACGTATCT
100821474 AAAAGTATTT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.27, C:0.14, G:0.25, T:0.33
Consensus pattern (26 bp):
AAATGAAAGCCTTTGTGACGTATCTG
Found at i:100828265 original size:221 final size:222
Alignment explanation
Indices: 100827877--100828299 Score: 580
Period size: 221 Copynumber: 1.9 Consensus size: 222
100827867 ATATTTGTAA
* * ***
100827877 GATATCCAAAGGGAACAAAAGGTGGTTTGTTTTATAACCTAAAAGAGAAAAATTGTTATAGTGTC
1 GATATCCAAAGGGAACAAAAGGTGGTTTATTTTATAACCCAAAAGAGAAAAACCATTATAGTGTC
* * * *
100827942 AACTCATGCTACTTTCCTTAAAGATATTTACATGAATAAATTCTAACCTCAGAGTAAAAAGGTAC
66 AACTCATGCTACTTTCCTTAAAGAAAGTTACATGAATAAATTCAAAACTCAGAGTAAAAAGGTAC
* * * *
100828007 TTGAGGAACTTTCGGGAAATATACAAAACCCTAATGAAACAGTTCCAAAACTAACTCTTAATAGT
131 TTGAAGAACTTTCGAGAAATATACAAAACCCTAATGAAACAGTTCCAAAACCAACTCTTAATAGC
100828072 AGACCTGTAAATTGTAGATGTTTTTAG
196 AGACCTGTAAATTGTAGATGTTTTTAG
* * *
100828099 GATATCCAAAGGGAACAAAGGGTGGTTTATTTTATAACCCGAAAGAG-CAAACCATTATAGTGTC
1 GATATCCAAAGGGAACAAAAGGTGGTTTATTTTATAACCCAAAAGAGAAAAACCATTATAGTGTC
* * * *
100828163 AACTCATGCTACTTTTCTTGAAGAAAGTTACATGGATGAAA-TCAAAACTCAGAGTAAAAATGTA
66 AACTCATGCTACTTTCCTTAAAGAAAGTTACATGAAT-AAATTCAAAACTCAGAGTAAAAAGGTA
* * * ** * *
100828227 CTTTAAGAACTTTCGAGAAATATATAAAACCTTAATGAAATGGTTCTAGAACCAACTCTTAATAG
130 CTTGAAGAACTTTCGAGAAATATACAAAACCCTAATGAAACAGTTCCAAAACCAACTCTTAATAG
100828292 CAGACCTG
195 CAGACCTG
100828300 CAAACGATCA
Statistics
Matches: 173, Mismatches: 27, Indels: 3
0.85 0.13 0.01
Matches are distributed among these distances:
221 127 0.73
222 46 0.27
ACGTcount: A:0.39, C:0.15, G:0.17, T:0.29
Consensus pattern (222 bp):
GATATCCAAAGGGAACAAAAGGTGGTTTATTTTATAACCCAAAAGAGAAAAACCATTATAGTGTC
AACTCATGCTACTTTCCTTAAAGAAAGTTACATGAATAAATTCAAAACTCAGAGTAAAAAGGTAC
TTGAAGAACTTTCGAGAAATATACAAAACCCTAATGAAACAGTTCCAAAACCAACTCTTAATAGC
AGACCTGTAAATTGTAGATGTTTTTAG
Found at i:100831355 original size:25 final size:25
Alignment explanation
Indices: 100831287--100831359 Score: 92
Period size: 26 Copynumber: 2.8 Consensus size: 25
100831277 AATTTTATCG
* *
100831287 AAATTTTATCGGGGGTAAAATCGTTA
1 AAATTTTA-CTGGGGTAAAATTGTTA
*
100831313 AAAATTTACTAGGGGTAAAATTGTTA
1 AAATTTTACT-GGGGTAAAATTGTTA
*
100831339 AAATTTTACTGGAGTAAAATT
1 AAATTTTACTGGGGTAAAATT
100831360 AGGATGAGAA
Statistics
Matches: 41, Mismatches: 5, Indels: 3
0.84 0.10 0.06
Matches are distributed among these distances:
25 11 0.27
26 30 0.73
ACGTcount: A:0.40, C:0.05, G:0.19, T:0.36
Consensus pattern (25 bp):
AAATTTTACTGGGGTAAAATTGTTA
Found at i:100831452 original size:39 final size:39
Alignment explanation
Indices: 100831398--100831479 Score: 164
Period size: 39 Copynumber: 2.1 Consensus size: 39
100831388 CATGAAAGTT
100831398 TATTTTGGGAAATAAAAAAAACCGAATCTGGTTGAACCA
1 TATTTTGGGAAATAAAAAAAACCGAATCTGGTTGAACCA
100831437 TATTTTGGGAAATAAAAAAAACCGAATCTGGTTGAACCA
1 TATTTTGGGAAATAAAAAAAACCGAATCTGGTTGAACCA
100831476 TATT
1 TATT
100831480 ACAGAGTACT
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 43 1.00
ACGTcount: A:0.43, C:0.12, G:0.17, T:0.28
Consensus pattern (39 bp):
TATTTTGGGAAATAAAAAAAACCGAATCTGGTTGAACCA
Found at i:100832811 original size:22 final size:22
Alignment explanation
Indices: 100832785--100832839 Score: 83
Period size: 22 Copynumber: 2.5 Consensus size: 22
100832775 ATTTCAAAAT
100832785 TATCGATACTTAACCAAAAAGG
1 TATCGATACTTAACCAAAAAGG
***
100832807 TATCGATACTTGGGCAAAAAGG
1 TATCGATACTTAACCAAAAAGG
100832829 TATCGATACTT
1 TATCGATACTT
100832840 TTGACCTAGA
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 30 1.00
ACGTcount: A:0.38, C:0.16, G:0.18, T:0.27
Consensus pattern (22 bp):
TATCGATACTTAACCAAAAAGG
Found at i:100833217 original size:19 final size:20
Alignment explanation
Indices: 100833192--100833230 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
100833182 GGCCTAAATA
*
100833192 AAAAATTGACATACATTTTC
1 AAAATTTGACATACATTTTC
*
100833212 AAAATTTGACATTCATTTT
1 AAAATTTGACATACATTTT
100833231 TACTTTGAAG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.41, C:0.13, G:0.05, T:0.41
Consensus pattern (20 bp):
AAAATTTGACATACATTTTC
Found at i:100839597 original size:45 final size:45
Alignment explanation
Indices: 100839545--100839631 Score: 156
Period size: 45 Copynumber: 1.9 Consensus size: 45
100839535 TATGTAATCT
*
100839545 GAACTCATTGAGTTGTGGTTTGAGTTCAAGATATATGTGACATCC
1 GAACTCATTGAGTTGTGGTCTGAGTTCAAGATATATGTGACATCC
*
100839590 GAACTCATTGAGTTGTGGTCTGAGTTCATGATATATGTGACA
1 GAACTCATTGAGTTGTGGTCTGAGTTCAAGATATATGTGACA
100839632 CATGTTTTGG
Statistics
Matches: 40, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
45 40 1.00
ACGTcount: A:0.26, C:0.13, G:0.25, T:0.36
Consensus pattern (45 bp):
GAACTCATTGAGTTGTGGTCTGAGTTCAAGATATATGTGACATCC
Found at i:100850494 original size:43 final size:43
Alignment explanation
Indices: 100850333--100850495 Score: 204
Period size: 43 Copynumber: 3.8 Consensus size: 43
100850323 CCAAGATGAG
* * * * * *
100850333 ATTACATGTAAGACCATGTCTGGGACATTGGAAT--TGTATTGA
1 ATTACGTGTAAGACCCTATCTGGGACATTGGCATCAT-TAATCA
* * *
100850375 GATTACGTTTAAGACCATGTCTGGGACATTGGCATCATTAATCA
1 -ATTACGTGTAAGACCCTATCTGGGACATTGGCATCATTAATCA
100850419 ATTACGTGTAAGACCCTATCTGGGACATTGGCATCATTAATCA
1 ATTACGTGTAAGACCCTATCTGGGACATTGGCATCATTAATCA
*
100850462 ATTACGTGTAAGACCCTATCTGGGACAGTGGCAT
1 ATTACGTGTAAGACCCTATCTGGGACATTGGCAT
100850496 TGATATGTGA
Statistics
Matches: 109, Mismatches: 9, Indels: 4
0.89 0.07 0.03
Matches are distributed among these distances:
43 104 0.95
44 4 0.04
45 1 0.01
ACGTcount: A:0.29, C:0.18, G:0.22, T:0.31
Consensus pattern (43 bp):
ATTACGTGTAAGACCCTATCTGGGACATTGGCATCATTAATCA
Found at i:100859181 original size:29 final size:29
Alignment explanation
Indices: 100859137--100859407 Score: 163
Period size: 29 Copynumber: 9.4 Consensus size: 29
100859127 CCATAACCGA
*
100859137 GCACTGTGTGTACGAGATCGGTTGTTGAG
1 GCACTGTGTGTGCGAGATCGGTTGTTGAG
* * * ****
100859166 GCACTGTATGTGCGAGTTCCGTAACCGA-
1 GCACTGTGTGTGCGAGATCGGTTGTTGAG
* *
100859194 GCATTATGTGTGCGAGATCGGTTGTTGAG
1 GCACTGTGTGTGCGAGATCGGTTGTTGAG
* * * * * ****
100859223 GCATTATGTGTGTGAGTTCCGTAACCGA-
1 GCACTGTGTGTGCGAGATCGGTTGTTGAG
*
100859251 GCACTATGTGTGCGAGATCGGTTGTTGAG
1 GCACTGTGTGTGCGAGATCGGTTGTTGAG
* * * ****
100859280 GCACTGTGTGTGTGAGTTCTGTAACCGA-
1 GCACTGTGTGTGCGAGATCGGTTGTTGAG
*
100859308 GCACTGTGTGTGTGAGATCGGTTGTTGAG
1 GCACTGTGTGTGCGAGATCGGTTGTTGAG
* * **** *
100859337 GCACTGTGTGTGCGAGTTCCG-TAACCAA
1 GCACTGTGTGTGCGAGATCGGTTGTTGAG
* *
100859365 GCACTGTGTGTGCAAGATCGGTTGTTGGG
1 GCACTGTGTGTGCGAGATCGGTTGTTGAG
100859394 GCACTAAGTGTGTG
1 GCACT--GTGTGTG
100859408 AAATGAGATC
Statistics
Matches: 173, Mismatches: 63, Indels: 10
0.70 0.26 0.04
Matches are distributed among these distances:
28 81 0.47
29 85 0.49
31 7 0.04
ACGTcount: A:0.18, C:0.16, G:0.35, T:0.31
Consensus pattern (29 bp):
GCACTGTGTGTGCGAGATCGGTTGTTGAG
Found at i:100859195 original size:57 final size:57
Alignment explanation
Indices: 100859107--100859408 Score: 451
Period size: 57 Copynumber: 5.3 Consensus size: 57
100859097 AAGTGAACAT
* *
100859107 AGGCACTGTGTGTGTGAGTTCCATAACCGAGCACTGTGTGTACGAGATCGGTTGTTG
1 AGGCACTGTGTGTGTGAGTTCCGTAACCGAGCACTGTGTGTGCGAGATCGGTTGTTG
* * * *
100859164 AGGCACTGTATGTGCGAGTTCCGTAACCGAGCATTATGTGTGCGAGATCGGTTGTTG
1 AGGCACTGTGTGTGTGAGTTCCGTAACCGAGCACTGTGTGTGCGAGATCGGTTGTTG
* * *
100859221 AGGCATTATGTGTGTGAGTTCCGTAACCGAGCACTATGTGTGCGAGATCGGTTGTTG
1 AGGCACTGTGTGTGTGAGTTCCGTAACCGAGCACTGTGTGTGCGAGATCGGTTGTTG
* *
100859278 AGGCACTGTGTGTGTGAGTTCTGTAACCGAGCACTGTGTGTGTGAGATCGGTTGTTG
1 AGGCACTGTGTGTGTGAGTTCCGTAACCGAGCACTGTGTGTGCGAGATCGGTTGTTG
* * *
100859335 AGGCACTGTGTGTGCGAGTTCCGTAACCAAGCACTGTGTGTGCAAGATCGGTTGTTG
1 AGGCACTGTGTGTGTGAGTTCCGTAACCGAGCACTGTGTGTGCGAGATCGGTTGTTG
* **
100859392 GGGCACTAAGTGTGTGA
1 AGGCACTGTGTGTGTGA
100859409 AATGAGATCA
Statistics
Matches: 220, Mismatches: 25, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
57 220 1.00
ACGTcount: A:0.19, C:0.17, G:0.34, T:0.30
Consensus pattern (57 bp):
AGGCACTGTGTGTGTGAGTTCCGTAACCGAGCACTGTGTGTGCGAGATCGGTTGTTG
Found at i:100861838 original size:56 final size:56
Alignment explanation
Indices: 100861752--100861871 Score: 231
Period size: 56 Copynumber: 2.1 Consensus size: 56
100861742 ACAAGGGATG
100861752 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
*
100861808 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
100861864 ATGGGCAA
1 ATGGGCAA
100861872 TAAACTAATA
Statistics
Matches: 63, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
56 63 1.00
ACGTcount: A:0.45, C:0.09, G:0.23, T:0.23
Consensus pattern (56 bp):
ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
Found at i:100863798 original size:47 final size:47
Alignment explanation
Indices: 100863745--100864005 Score: 363
Period size: 47 Copynumber: 5.6 Consensus size: 47
100863735 ATTTGAATAT
*
100863745 ATGTGAA-AGTGCATATATGAGATAAGGCCGAATGGCCAATGTGATGA
1 ATGTGAACAGTG-ATATATGTGATAAGGCCGAATGGCCAATGTGATGA
*
100863792 ATGTGAACATGTG-TATGTGTGATAAGGCCGAATGGCCAATGTGATGA
1 ATGTGAACA-GTGATATATGTGATAAGGCCGAATGGCCAATGTGATGA
*
100863839 ATGTGAACATGTG-TATGTGTGATAAGGCCGAATGGCCAATGTGATGA
1 ATGTGAACA-GTGATATATGTGATAAGGCCGAATGGCCAATGTGATGA
*
100863886 ATGTGAACA-TGCATATATGAGATAAGGCCGAATGGCCAATGTGATGA
1 ATGTGAACAGTG-ATATATGTGATAAGGCCGAATGGCCAATGTGATGA
*
100863933 ATGTGAA-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGG
1 ATGTGAACAGTG-ATATATGTGATAAGGCCGAATGGCCAATGTGATGA
* *
100863980 ATGTGGA-AGTGTATAAATGTGATAAG
1 ATGTGAACAGTG-ATATATGTGATAAG
100864006 TCCCGAAGGG
Statistics
Matches: 200, Mismatches: 9, Indels: 10
0.91 0.04 0.05
Matches are distributed among these distances:
45 2 0.01
46 1 0.00
47 193 0.96
48 1 0.00
49 3 0.01
ACGTcount: A:0.33, C:0.10, G:0.31, T:0.26
Consensus pattern (47 bp):
ATGTGAACAGTGATATATGTGATAAGGCCGAATGGCCAATGTGATGA
Found at i:100863883 original size:22 final size:22
Alignment explanation
Indices: 100863856--100863977 Score: 61
Period size: 22 Copynumber: 5.3 Consensus size: 22
100863846 CATGTGTATG
100863856 TGTGATAAGGCCGAATGGCCAA
1 TGTGATAAGGCCGAATGGCCAA
* * *
100863878 TGTGATGAATG-TGAACAT-GCATATA
1 TGTGAT-AAGGCCG-A-ATGGC-CA-A
*
100863903 TGAGATAAGGCCGAATGGCCAA
1 TGTGATAAGGCCGAATGGCCAA
* * ***
100863925 TGTGATGAATG-TGAAAGTGTATATA
1 TGTGAT-AAGGCCG-AA-TGGCCA-A
100863950 TGTGATAAGGCCGAATGGCCAA
1 TGTGATAAGGCCGAATGGCCAA
100863972 TGTGAT
1 TGTGAT
100863978 GGATGTGGAA
Statistics
Matches: 70, Mismatches: 18, Indels: 24
0.62 0.16 0.21
Matches are distributed among these distances:
22 21 0.30
23 17 0.24
24 17 0.24
25 15 0.21
ACGTcount: A:0.34, C:0.11, G:0.30, T:0.25
Consensus pattern (22 bp):
TGTGATAAGGCCGAATGGCCAA
Found at i:100864001 original size:141 final size:141
Alignment explanation
Indices: 100863745--100864005 Score: 413
Period size: 141 Copynumber: 1.9 Consensus size: 141
100863735 ATTTGAATAT
* *
100863745 ATGTGAAAGTGCATATATGAGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGTGTATGT
1 ATGTGAAAGTGCATATATGAGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGTATATAT
*
100863810 GTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGTGTATGTGTGATAAGGCCGAATGGC
66 GTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGTGTATATGTGATAAGGCCGAATGGC
100863875 CAATGTGATGA
131 CAATGTGATGA
100863886 ATGTGAACA-TGCATATATGAGATAAGGCCGAATGGCCAATGTGATGAATGTGAA-AGTGTATAT
1 ATGTGAA-AGTGCATATATGAGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA-TGTATAT
* *
100863949 ATGTGATAAGGCCGAATGGCCAATGTGATGGATGTGGA-A-GTGTATAAATGTGATAAG
64 ATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGTGTAT--ATGTGATAAG
100864006 TCCCGAAGGG
Statistics
Matches: 111, Mismatches: 5, Indels: 8
0.90 0.04 0.06
Matches are distributed among these distances:
139 6 0.05
140 2 0.02
141 102 0.92
142 1 0.01
ACGTcount: A:0.33, C:0.10, G:0.31, T:0.26
Consensus pattern (141 bp):
ATGTGAAAGTGCATATATGAGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGTATATAT
GTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGTGTATATGTGATAAGGCCGAATGGC
CAATGTGATGA
Found at i:100873623 original size:15 final size:15
Alignment explanation
Indices: 100873593--100873655 Score: 80
Period size: 15 Copynumber: 4.4 Consensus size: 15
100873583 GTATCTTGGG
100873593 TTTCTTTATT-TGGA
1 TTTCTTTATTCTGGA
100873607 TTTCTTTATTCTGGA
1 TTTCTTTATTCTGGA
*
100873622 TTTCTCTA-TCTTGGA
1 TTTCTTTATTC-TGGA
100873637 TTTCTTTATTC-GG-
1 TTTCTTTATTCTGGA
100873650 TTTCTT
1 TTTCTT
100873656 GTTATCTTTG
Statistics
Matches: 44, Mismatches: 2, Indels: 7
0.83 0.04 0.13
Matches are distributed among these distances:
13 6 0.14
14 14 0.32
15 22 0.50
16 2 0.05
ACGTcount: A:0.11, C:0.14, G:0.13, T:0.62
Consensus pattern (15 bp):
TTTCTTTATTCTGGA
Found at i:100873663 original size:30 final size:29
Alignment explanation
Indices: 100873591--100873655 Score: 98
Period size: 30 Copynumber: 2.3 Consensus size: 29
100873581 TCGTATCTTG
100873591 GGTTTCTTTAT-TTGGATTTCTTTATTCT
1 GGTTTCTTTATCTTGGATTTCTTTATTCT
*
100873619 GGATTTCTCTATCTTGGATTTCTTTATTC-
1 GG-TTTCTTTATCTTGGATTTCTTTATTCT
100873648 GGTTTCTT
1 GGTTTCTT
100873656 GTTATCTTTG
Statistics
Matches: 33, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
28 7 0.21
29 10 0.30
30 16 0.48
ACGTcount: A:0.11, C:0.14, G:0.15, T:0.60
Consensus pattern (29 bp):
GGTTTCTTTATCTTGGATTTCTTTATTCT
Found at i:100879256 original size:40 final size:40
Alignment explanation
Indices: 100879211--100879314 Score: 113
Period size: 40 Copynumber: 2.6 Consensus size: 40
100879201 TATGGCATAT
* *
100879211 AGTGTGCGATTTGAGATAGCTTCGGCTATATGCGGCACTC
1 AGTGTGCGATTTGAGATAGCTTCGACTATATACGGCACTC
* * *
100879251 AGTGTGCGATTCG-GAATAGCTTCGACTATATATGGCACTT
1 AGTGTGCGATTTGAG-ATAGCTTCGACTATATACGGCACTC
*
100879291 AGTGTGCAAGA-CTGAGATAGCTTC
1 AGTGTGC--GATTTGAGATAGCTTC
100879315 AGCTGTGTAA
Statistics
Matches: 53, Mismatches: 7, Indels: 7
0.79 0.10 0.10
Matches are distributed among these distances:
39 1 0.02
40 40 0.75
41 9 0.17
42 3 0.06
ACGTcount: A:0.24, C:0.18, G:0.28, T:0.30
Consensus pattern (40 bp):
AGTGTGCGATTTGAGATAGCTTCGACTATATACGGCACTC
Found at i:100879329 original size:41 final size:42
Alignment explanation
Indices: 100879265--100879380 Score: 141
Period size: 41 Copynumber: 2.8 Consensus size: 42
100879255 TGCGATTCGG
*
100879265 AATAGCTTC-GACTATATAT-GGCACTTAGTGTGCAAGACTG-
1 AATAGCTTCAG-CTATGTATAGGCACTTAGTGTGCAAGACTGT
* *
100879305 AGATAGCTTCAGCTGTGTA-AGGCACTTAGTGTGCAAGATTGT
1 A-ATAGCTTCAGCTATGTATAGGCACTTAGTGTGCAAGACTGT
* *
100879347 AATAGCTTCGGCTATGTATTGGCACTTAGTGTGC
1 AATAGCTTCAGCTATGTATAGGCACTTAGTGTGC
100879381 GAGATATCGA
Statistics
Matches: 65, Mismatches: 6, Indels: 8
0.82 0.08 0.10
Matches are distributed among these distances:
40 1 0.02
41 48 0.74
42 16 0.25
ACGTcount: A:0.26, C:0.16, G:0.26, T:0.32
Consensus pattern (42 bp):
AATAGCTTCAGCTATGTATAGGCACTTAGTGTGCAAGACTGT
Found at i:100882633 original size:22 final size:20
Alignment explanation
Indices: 100882608--100882650 Score: 50
Period size: 22 Copynumber: 2.0 Consensus size: 20
100882598 AAGCACTCCA
*
100882608 AGGATAAAAAAACGAAAGAAGG
1 AGGAGAAAAAAA-GAAA-AAGG
*
100882630 AGGAGAAGAAAAGAAAAAGG
1 AGGAGAAAAAAAGAAAAAGG
100882650 A
1 A
100882651 AGAAACATCA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
20 5 0.26
21 4 0.21
22 10 0.53
ACGTcount: A:0.65, C:0.02, G:0.30, T:0.02
Consensus pattern (20 bp):
AGGAGAAAAAAAGAAAAAGG
Found at i:100883744 original size:13 final size:13
Alignment explanation
Indices: 100883726--100883802 Score: 100
Period size: 13 Copynumber: 5.9 Consensus size: 13
100883716 AGTTCTTCAT
100883726 TGCTTTTGAAAAG
1 TGCTTTTGAAAAG
100883739 TGCTTTTGAAAAG
1 TGCTTTTGAAAAG
* *
100883752 TGCTGTGGAAAAG
1 TGCTTTTGAAAAG
*
100883765 TGCTTTTGAGAAG
1 TGCTTTTGAAAAG
* *
100883778 TACTTTTGAGAAG
1 TGCTTTTGAAAAG
*
100883791 TGCTTTGGAAAA
1 TGCTTTTGAAAA
100883803 ATTTAAGTGT
Statistics
Matches: 55, Mismatches: 9, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
13 55 1.00
ACGTcount: A:0.30, C:0.08, G:0.27, T:0.35
Consensus pattern (13 bp):
TGCTTTTGAAAAG
Found at i:100883784 original size:39 final size:39
Alignment explanation
Indices: 100883726--100883802 Score: 118
Period size: 39 Copynumber: 2.0 Consensus size: 39
100883716 AGTTCTTCAT
*
100883726 TGCTTTTGAAAAGTGCTTTTGAAAAGTGCTGTGGAAAAG
1 TGCTTTTGAAAAGTACTTTTGAAAAGTGCTGTGGAAAAG
* * *
100883765 TGCTTTTGAGAAGTACTTTTGAGAAGTGCTTTGGAAAA
1 TGCTTTTGAAAAGTACTTTTGAAAAGTGCTGTGGAAAA
100883803 ATTTAAGTGT
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
39 34 1.00
ACGTcount: A:0.30, C:0.08, G:0.27, T:0.35
Consensus pattern (39 bp):
TGCTTTTGAAAAGTACTTTTGAAAAGTGCTGTGGAAAAG
Found at i:100886171 original size:25 final size:27
Alignment explanation
Indices: 100886134--100886186 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 27
100886124 TCAAACATGC
100886134 ATTTAGGTCAATTTAAC-CCTAGGGGT
1 ATTTAGGTCAATTTAACTCCTAGGGGT
* *
100886160 ATTTTGGT-AATTTATCTCCTAGGGGT
1 ATTTAGGTCAATTTAACTCCTAGGGGT
100886186 A
1 A
100886187 AAACTGTCAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.25, C:0.13, G:0.23, T:0.40
Consensus pattern (27 bp):
ATTTAGGTCAATTTAACTCCTAGGGGT
Found at i:100887709 original size:26 final size:26
Alignment explanation
Indices: 100887671--100887780 Score: 193
Period size: 26 Copynumber: 4.2 Consensus size: 26
100887661 CATGAAATTC
*
100887671 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGGAACATTTACCTAACCCA
100887697 TTATCATGGAACATTTACCTAACCCA
1 TTATCATGGAACATTTACCTAACCCA
*
100887723 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGGAACATTTACCTAACCCA
*
100887749 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGGAACATTTACCTAACCCA
100887775 TTATCA
1 TTATCA
100887781 ATTTGTATCA
Statistics
Matches: 82, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 82 1.00
ACGTcount: A:0.35, C:0.25, G:0.06, T:0.34
Consensus pattern (26 bp):
TTATCATGGAACATTTACCTAACCCA
Found at i:100891740 original size:137 final size:137
Alignment explanation
Indices: 100891494--100891780 Score: 520
Period size: 137 Copynumber: 2.1 Consensus size: 137
100891484 CATTGGGCCT
** * *
100891494 AAGCCCATTCAGGTAATAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
1 AAGCCCATTTGGGTAACAGTGGTACTGGGCCAAAGCCCTTTTCAGATTACAATAAACTGGGCCTT
* *
100891559 AGCCCCTTATTCAGATAACAGTATGGCCTATAGGCCCATTTCAAAATACATGCAACATCAGTAAA
66 AGCCCCTTATTCAGATAACAGTATGACCCATAGGCCCATTTCAAAATACATGCAACATCAGTAAA
100891624 CATATGC
131 CATATGC
100891631 AAGCCCATTTGGGTAACAGTGGTACTGGGCCAAAGCCCTTTTCAGATTACAATAAACTGGGCCTT
1 AAGCCCATTTGGGTAACAGTGGTACTGGGCCAAAGCCCTTTTCAGATTACAATAAACTGGGCCTT
100891696 AGCCCCTTATTCAGATAACAGTATGACCCATAGGCCCATTTCAAAATACATGCAACATCAGTAAA
66 AGCCCCTTATTCAGATAACAGTATGACCCATAGGCCCATTTCAAAATACATGCAACATCAGTAAA
100891761 CATATGC
131 CATATGC
100891768 AAGCCCATTTGGG
1 AAGCCCATTTGGG
100891781 GAGACTACTC
Statistics
Matches: 144, Mismatches: 6, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
137 144 1.00
ACGTcount: A:0.32, C:0.24, G:0.18, T:0.25
Consensus pattern (137 bp):
AAGCCCATTTGGGTAACAGTGGTACTGGGCCAAAGCCCTTTTCAGATTACAATAAACTGGGCCTT
AGCCCCTTATTCAGATAACAGTATGACCCATAGGCCCATTTCAAAATACATGCAACATCAGTAAA
CATATGC
Found at i:100892065 original size:25 final size:27
Alignment explanation
Indices: 100892028--100892080 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 27
100892018 TCAAACATGC
100892028 ATTTAGGTCAATTTAAC-CCTAGGGGT
1 ATTTAGGTCAATTTAACTCCTAGGGGT
* *
100892054 ATTTCGGT-AATTTATCTCCTAGGGGT
1 ATTTAGGTCAATTTAACTCCTAGGGGT
100892080 A
1 A
100892081 AAATTGTAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.25, C:0.15, G:0.23, T:0.38
Consensus pattern (27 bp):
ATTTAGGTCAATTTAACTCCTAGGGGT
Found at i:100893603 original size:26 final size:26
Alignment explanation
Indices: 100893567--100893650 Score: 150
Period size: 26 Copynumber: 3.2 Consensus size: 26
100893557 CATGAAATTC
*
100893567 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCTA
100893593 TTATCATGAAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCTA
*
100893619 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCTA
100893645 TTATCA
1 TTATCA
100893651 ATTTGTATCA
Statistics
Matches: 56, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 56 1.00
ACGTcount: A:0.37, C:0.24, G:0.05, T:0.35
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCTA
Found at i:100896114 original size:18 final size:17
Alignment explanation
Indices: 100896093--100896210 Score: 67
Period size: 18 Copynumber: 6.5 Consensus size: 17
100896083 AAATTATATT
100896093 TTTTAATGATTTTTATAA
1 TTTTAAT-ATTTTTATAA
100896111 TTTTAA-ATTTTTTGATAA
1 TTTTAATA-TTTTT-ATAA
* ** *
100896129 TTTAAATACATTTATTAT
1 TTTTAATATTTTTA-TAA
* *
100896147 TTTTAAGAATTTTTAATAT
1 TTTTAA-TATTTTT-ATAA
* *
100896166 TTTTTATACTTTTTAGAA
1 TTTTAATA-TTTTTATAA
*
100896184 TTATTAATATTTTTATCAT
1 TT-TTAATATTTTTAT-AA
100896203 TTTTAATA
1 TTTTAATA
100896211 AGTATTACTA
Statistics
Matches: 76, Mismatches: 15, Indels: 18
0.70 0.14 0.17
Matches are distributed among these distances:
16 1 0.01
17 6 0.08
18 42 0.55
19 26 0.34
20 1 0.01
ACGTcount: A:0.34, C:0.03, G:0.03, T:0.60
Consensus pattern (17 bp):
TTTTAATATTTTTATAA
Found at i:100896132 original size:17 final size:17
Alignment explanation
Indices: 100896102--100896135 Score: 52
Period size: 17 Copynumber: 2.0 Consensus size: 17
100896092 TTTTTAATGA
100896102 TTTTTATAATTTTAAAT
1 TTTTTATAATTTTAAAT
100896119 TTTTTGATAA-TTTAAAT
1 TTTTT-ATAATTTTAAAT
100896136 ACATTTATTA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 12 0.75
18 4 0.25
ACGTcount: A:0.35, C:0.00, G:0.03, T:0.62
Consensus pattern (17 bp):
TTTTTATAATTTTAAAT
Found at i:100896164 original size:28 final size:27
Alignment explanation
Indices: 100896133--100896227 Score: 68
Period size: 28 Copynumber: 3.4 Consensus size: 27
100896123 TGATAATTTA
*
100896133 AATACATTTATTATTTTTAAGAATTTTT
1 AATA-ATTTATTATTTTTAAGAATTATT
* *
100896161 AAT-ATTTTTTATACTTTTTAGAATTATT
1 AATAATTTATTAT--TTTTAAGAATTATT
* * * *
100896189 AATATTTTTATCATTTTTAATAAGTATT
1 AATA-ATTTATTATTTTTAAGAATTATT
*
100896217 ACTAA-TTATTA
1 AATAATTTATTA
100896228 ATTATATATG
Statistics
Matches: 51, Mismatches: 12, Indels: 10
0.70 0.16 0.14
Matches are distributed among these distances:
26 13 0.25
28 32 0.63
30 6 0.12
ACGTcount: A:0.36, C:0.04, G:0.03, T:0.57
Consensus pattern (27 bp):
AATAATTTATTATTTTTAAGAATTATT
Found at i:100901952 original size:33 final size:33
Alignment explanation
Indices: 100901904--100902022 Score: 132
Period size: 33 Copynumber: 3.5 Consensus size: 33
100901894 AATAATTCAT
* *
100901904 TAGGATAGTAAACACAAAAAAGAGATAGTCCGA
1 TAGGACAGTAAACACAAAAAAGAGATAGTCCGC
* *
100901937 TGGGACAGTAAACACAAAACAA-AGATAGTCTGC
1 TAGGACAGTAAACACAAAA-AAGAGATAGTCCGC
* * *
100901970 TAGGACAGTAAACACATAACATAGAGAGAGTACGC
1 TAGGACAGTAAACACA-AA-AAAGAGATAGTCCGC
*
100902005 CAGGACAGTAAACACAAA
1 TAGGACAGTAAACACAAA
100902023 TAGAGTTTAT
Statistics
Matches: 72, Mismatches: 10, Indels: 7
0.81 0.11 0.08
Matches are distributed among these distances:
33 41 0.57
34 7 0.10
35 24 0.33
ACGTcount: A:0.49, C:0.17, G:0.21, T:0.13
Consensus pattern (33 bp):
TAGGACAGTAAACACAAAAAAGAGATAGTCCGC
Found at i:100902017 original size:35 final size:33
Alignment explanation
Indices: 100901939--100902022 Score: 107
Period size: 35 Copynumber: 2.5 Consensus size: 33
100901929 TAGTCCGATG
* *
100901939 GGACAGTAAACACAAAACAAAGATAGTCTGCTA
1 GGACAGTAAACACAAAACAAAGAGAGTCTGCCA
*
100901972 GGACAGTAAACACATAACATAGAGAGAGTAC-GCCA
1 GGACAGTAAACACAAAACA-A-AGAGAGT-CTGCCA
100902007 GGACAGTAAACACAAA
1 GGACAGTAAACACAAA
100902023 TAGAGTTTAT
Statistics
Matches: 44, Mismatches: 4, Indels: 4
0.85 0.08 0.08
Matches are distributed among these distances:
33 18 0.41
34 1 0.02
35 24 0.55
36 1 0.02
ACGTcount: A:0.49, C:0.19, G:0.20, T:0.12
Consensus pattern (33 bp):
GGACAGTAAACACAAAACAAAGAGAGTCTGCCA
Found at i:100903228 original size:20 final size:20
Alignment explanation
Indices: 100903190--100903228 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
100903180 TGATGTTGGT
*
100903190 AGGACTTGTGAGGATGATTG
1 AGGACTTGTGAGGAAGATTG
100903210 AGGACTT-TGAGGAGAGATT
1 AGGACTTGTGAGGA-AGATT
100903229 AAGCTAGATA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 6 0.35
20 11 0.65
ACGTcount: A:0.28, C:0.05, G:0.38, T:0.28
Consensus pattern (20 bp):
AGGACTTGTGAGGAAGATTG
Found at i:100903493 original size:12 final size:12
Alignment explanation
Indices: 100903476--100903500 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
100903466 GTTGTAAGAA
100903476 TTATTATTAGTT
1 TTATTATTAGTT
100903488 TTATTATTAGTT
1 TTATTATTAGTT
100903500 T
1 T
100903501 GTTTTATAGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.24, C:0.00, G:0.08, T:0.68
Consensus pattern (12 bp):
TTATTATTAGTT
Found at i:100903495 original size:15 final size:16
Alignment explanation
Indices: 100903475--100903507 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
100903465 TGTTGTAAGA
100903475 ATTATTA-TTAGTTTT
1 ATTATTAGTTAGTTTT
*
100903490 ATTATTAGTTTGTTTT
1 ATTATTAGTTAGTTTT
100903506 AT
1 AT
100903508 AGTAGTTAAG
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 7 0.44
16 9 0.56
ACGTcount: A:0.24, C:0.00, G:0.09, T:0.67
Consensus pattern (16 bp):
ATTATTAGTTAGTTTT
Found at i:100904143 original size:24 final size:22
Alignment explanation
Indices: 100904095--100904158 Score: 58
Period size: 24 Copynumber: 2.7 Consensus size: 22
100904085 CATTTAAATA
*
100904095 TTATAATATTAATAAATTTTAACT
1 TTATAATA-TAAT-ATTTTTAACT
*
100904119 TCATATAA-ATATATATTTTTTACT
1 T--TATAATATA-ATATTTTTAACT
100904143 TTATAATATAATATTT
1 TTATAATATAATATTT
100904159 AAAATGATTT
Statistics
Matches: 34, Mismatches: 2, Indels: 10
0.74 0.04 0.22
Matches are distributed among these distances:
22 11 0.32
23 3 0.09
24 12 0.35
25 3 0.09
26 5 0.15
ACGTcount: A:0.42, C:0.05, G:0.00, T:0.53
Consensus pattern (22 bp):
TTATAATATAATATTTTTAACT
Found at i:100906247 original size:13 final size:14
Alignment explanation
Indices: 100906219--100906254 Score: 56
Period size: 13 Copynumber: 2.6 Consensus size: 14
100906209 TTAAAAAATT
*
100906219 AAATTATTTCACTA
1 AAATAATTTCACTA
100906233 AAATAATTTCA-TA
1 AAATAATTTCACTA
100906246 AAATAATTT
1 AAATAATTT
100906255 TTTTTATATT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
13 11 0.52
14 10 0.48
ACGTcount: A:0.50, C:0.08, G:0.00, T:0.42
Consensus pattern (14 bp):
AAATAATTTCACTA
Found at i:100910295 original size:40 final size:40
Alignment explanation
Indices: 100910240--100910320 Score: 144
Period size: 40 Copynumber: 2.0 Consensus size: 40
100910230 CCTTTCCCCA
* *
100910240 AAGTAGTAAATTATTTGACTCTGCACATGTCTAACATCTT
1 AAGTACTAAATTATTTGACTCTACACATGTCTAACATCTT
100910280 AAGTACTAAATTATTTGACTCTACACATGTCTAACATCTT
1 AAGTACTAAATTATTTGACTCTACACATGTCTAACATCTT
100910320 A
1 A
100910321 GCTTTGATAT
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
40 39 1.00
ACGTcount: A:0.35, C:0.19, G:0.10, T:0.37
Consensus pattern (40 bp):
AAGTACTAAATTATTTGACTCTACACATGTCTAACATCTT
Found at i:100914132 original size:18 final size:18
Alignment explanation
Indices: 100914109--100914151 Score: 61
Period size: 18 Copynumber: 2.4 Consensus size: 18
100914099 AAATAGATTT
100914109 TTAATTAAATAAATTT-AA
1 TTAATTAAA-AAATTTAAA
*
100914127 TTAATTAAAAATTTTAAA
1 TTAATTAAAAAATTTAAA
100914145 TTAATTA
1 TTAATTA
100914152 CACCTTGAAT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
17 5 0.22
18 18 0.78
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (18 bp):
TTAATTAAAAAATTTAAA
Found at i:100914776 original size:29 final size:29
Alignment explanation
Indices: 100914736--100914792 Score: 87
Period size: 29 Copynumber: 2.0 Consensus size: 29
100914726 CCAGAGCTAT
*
100914736 TCTCACTCTCCTCTTTCTGTATCCCCATC
1 TCTCACTCTCCTCTTTCTGCATCCCCATC
* *
100914765 TCTCCCTCTCCTCTTTCTGCCTCCCCAT
1 TCTCACTCTCCTCTTTCTGCATCCCCAT
100914793 TTTTGCTTAA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
29 25 1.00
ACGTcount: A:0.07, C:0.49, G:0.04, T:0.40
Consensus pattern (29 bp):
TCTCACTCTCCTCTTTCTGCATCCCCATC
Found at i:100919343 original size:13 final size:13
Alignment explanation
Indices: 100919325--100919354 Score: 60
Period size: 13 Copynumber: 2.3 Consensus size: 13
100919315 GAGAGGTTGG
100919325 ATCAACTTAAAGA
1 ATCAACTTAAAGA
100919338 ATCAACTTAAAGA
1 ATCAACTTAAAGA
100919351 ATCA
1 ATCA
100919355 TACTATCCAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.53, C:0.17, G:0.07, T:0.23
Consensus pattern (13 bp):
ATCAACTTAAAGA
Found at i:100920224 original size:32 final size:32
Alignment explanation
Indices: 100920183--100920246 Score: 128
Period size: 32 Copynumber: 2.0 Consensus size: 32
100920173 ACCTATAAGT
100920183 GTAGGTTCTACTCTGATATGAATTATTTATGA
1 GTAGGTTCTACTCTGATATGAATTATTTATGA
100920215 GTAGGTTCTACTCTGATATGAATTATTTATGA
1 GTAGGTTCTACTCTGATATGAATTATTTATGA
100920247 AATTTCATTA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 32 1.00
ACGTcount: A:0.28, C:0.09, G:0.19, T:0.44
Consensus pattern (32 bp):
GTAGGTTCTACTCTGATATGAATTATTTATGA
Found at i:100937037 original size:39 final size:39
Alignment explanation
Indices: 100936994--100937092 Score: 126
Period size: 39 Copynumber: 2.5 Consensus size: 39
100936984 AACATGTTTT
** *
100936994 TGAGTATTGTGATATATGCTTGAATGTTATGCGATTATA
1 TGAGTATTGTGATATATGCTTGAACATTATGCAATTATA
* * *
100937033 TGAGTATCGTGATATGTGCTTGAACATTATGTAATTATA
1 TGAGTATTGTGATATATGCTTGAACATTATGCAATTATA
* *
100937072 TGTGTAATGTGATATATGCTT
1 TGAGTATTGTGATATATGCTT
100937093 AAAAGTAAAT
Statistics
Matches: 50, Mismatches: 10, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
39 50 1.00
ACGTcount: A:0.28, C:0.06, G:0.22, T:0.43
Consensus pattern (39 bp):
TGAGTATTGTGATATATGCTTGAACATTATGCAATTATA
Found at i:100945446 original size:46 final size:46
Alignment explanation
Indices: 100945371--100945491 Score: 188
Period size: 46 Copynumber: 2.6 Consensus size: 46
100945361 TGTAACCTGC
* * *
100945371 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
* * *
100945417 CCATGAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
100945463 CCATAAGTGAACTCGGACTCAACTCAACG
1 CCATAAGTGAACTCGGACTCAACTCAACG
100945492 GGAAAAACAA
Statistics
Matches: 68, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
46 68 1.00
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.20
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
Found at i:100946579 original size:48 final size:48
Alignment explanation
Indices: 100946506--100946772 Score: 181
Period size: 48 Copynumber: 5.6 Consensus size: 48
100946496 CAAGGTAGGG
* * *
100946506 TGCCAATGCCATATCCTAGATATGGTCTTACATGGGACCACATATCAA
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCACATATCAA
* * *
100946554 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCACACAT-AT
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCACATATCAA
* * * * *
100946601 TG--AA-GCCGATAG-CCCA-ACTATGGTCTTACACGATGTCTCA-TTAT-GA
1 TGCCAATGCC-AT-GTCCCAGAC-ATGGTCTTACATG-GGAC-CACATATCAA
* * * * * *
100946647 TGCCAATGCCATGTCCCGGACATAGTCTTACATGGGATCGCATAACGA
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCACATATCAA
* * * * * *
100946695 TGCCAAAGCCATGTCCTAGACAGGGTCTTACATAGGACCACATGTCAC
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCACATATCAA
* * * * *
100946743 TGACAAAGCAATATCCCAGATATGGTCTTA
1 TGCCAATGCCATGTCCCAGACATGGTCTTA
100946773 TATAGGAGCT
Statistics
Matches: 166, Mismatches: 41, Indels: 24
0.72 0.18 0.10
Matches are distributed among these distances:
44 5 0.03
45 20 0.12
46 7 0.04
47 9 0.05
48 120 0.72
49 5 0.03
ACGTcount: A:0.30, C:0.26, G:0.19, T:0.25
Consensus pattern (48 bp):
TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCACATATCAA
Found at i:100958574 original size:40 final size:40
Alignment explanation
Indices: 100958518--100958709 Score: 287
Period size: 40 Copynumber: 4.8 Consensus size: 40
100958508 CAGATGATAA
100958518 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAT
* * *
100958558 TCGGGCTAAGTCCCGAAGGCATTTTTGTGAGTTACCAAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAT
100958598 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAT
* *
100958638 CCGGGCTAAGTCCCGAAGGCATTGGTGCGAGTTACTATAA-
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACCA-AAT
* * * *
100958678 CCGGGCTATGCCCCGAAGGCATTCGAGCGAGT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT
100958710 AGCTATATCC
Statistics
Matches: 139, Mismatches: 12, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
40 137 0.99
41 2 0.01
ACGTcount: A:0.24, C:0.24, G:0.29, T:0.23
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAT
Found at i:100968995 original size:77 final size:77
Alignment explanation
Indices: 100968863--100969016 Score: 272
Period size: 77 Copynumber: 2.0 Consensus size: 77
100968853 TGGACTCAAT
*
100968863 TTCCCTTTCTTGCCAAATCTTAAAACTTTCTTCCACGGGGACACTTTTAGAAATACCTTATCACC
1 TTCCCTTTCTTGCCAAATCTGAAAACTTTCTTCCACGGGGACACTTTTAGAAATACCTTATCACC
100968928 GACCTGAAACTC
66 GACCTGAAACTC
* * *
100968940 TTCCTTTTCTTGCCAAATCTGAAGACTTTCTTCCATGGGGACACTTTTAGAAATACCTTATCACC
1 TTCCCTTTCTTGCCAAATCTGAAAACTTTCTTCCACGGGGACACTTTTAGAAATACCTTATCACC
100969005 GACCTGAAACTC
66 GACCTGAAACTC
100969017 AATCTCTTTC
Statistics
Matches: 73, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
77 73 1.00
ACGTcount: A:0.27, C:0.29, G:0.12, T:0.33
Consensus pattern (77 bp):
TTCCCTTTCTTGCCAAATCTGAAAACTTTCTTCCACGGGGACACTTTTAGAAATACCTTATCACC
GACCTGAAACTC
Found at i:100995302 original size:27 final size:28
Alignment explanation
Indices: 100995272--100995404 Score: 146
Period size: 27 Copynumber: 4.9 Consensus size: 28
100995262 CTTTAATCAA
100995272 TAAAATGACTATTTTGCCCTTATGA-GG
1 TAAAATGACTATTTTGCCCTTATGATGG
* * * * *
100995299 TAAAATAAATGTTTTGCCCTTTTCA-GG
1 TAAAATGACTATTTTGCCCTTATGATGG
*
100995326 TAAAATGACTGTTTTGCCCTTAT-ATGG
1 TAAAATGACTATTTTGCCCTTATGATGG
* *
100995353 TAAAATGACTATTTTGCCCTTTTTATGG
1 TAAAATGACTATTTTGCCCTTATGATGG
* * *
100995381 TAAGATGACTATTTTACCCCTATG
1 TAAAATGACTATTTTGCCCTTATG
100995405 TAATGTATGT
Statistics
Matches: 89, Mismatches: 15, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
26 1 0.01
27 65 0.73
28 23 0.26
ACGTcount: A:0.28, C:0.16, G:0.16, T:0.41
Consensus pattern (28 bp):
TAAAATGACTATTTTGCCCTTATGATGG
Found at i:100995331 original size:54 final size:56
Alignment explanation
Indices: 100995272--100995404 Score: 173
Period size: 54 Copynumber: 2.4 Consensus size: 56
100995262 CTTTAATCAA
*
100995272 TAAAATGACTATTTTGCCCTTATGA-GGTAAAATAAATGTTTTGCCCTTTTCA-GG
1 TAAAATGACTATTTTGCCCTTATGATGGTAAAATAAATATTTTGCCCTTTTCATGG
* * * *
100995326 TAAAATGACTGTTTTGCCCTTAT-ATGGTAAAATGACTATTTTGCCCTTTTTATGG
1 TAAAATGACTATTTTGCCCTTATGATGGTAAAATAAATATTTTGCCCTTTTCATGG
* * *
100995381 TAAGATGACTATTTTACCCCTATG
1 TAAAATGACTATTTTGCCCTTATG
100995405 TAATGTATGT
Statistics
Matches: 67, Mismatches: 9, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
53 1 0.01
54 45 0.67
55 21 0.31
ACGTcount: A:0.28, C:0.16, G:0.16, T:0.41
Consensus pattern (56 bp):
TAAAATGACTATTTTGCCCTTATGATGGTAAAATAAATATTTTGCCCTTTTCATGG
Found at i:100998496 original size:27 final size:27
Alignment explanation
Indices: 100998466--100998537 Score: 117
Period size: 27 Copynumber: 2.7 Consensus size: 27
100998456 CCTTAATCGA
100998466 TAAAATGACTATTTTGCCTTTATGAGG
1 TAAAATGACTATTTTGCCTTTATGAGG
* * *
100998493 TAAAATGATTGTTTTGCCTTTATGTGG
1 TAAAATGACTATTTTGCCTTTATGAGG
100998520 TAAAATGACTATTTTGCC
1 TAAAATGACTATTTTGCC
100998538 CTTTTATGGT
Statistics
Matches: 40, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 40 1.00
ACGTcount: A:0.28, C:0.11, G:0.18, T:0.43
Consensus pattern (27 bp):
TAAAATGACTATTTTGCCTTTATGAGG
Found at i:100998547 original size:27 final size:26
Alignment explanation
Indices: 100998466--100998561 Score: 104
Period size: 27 Copynumber: 3.6 Consensus size: 26
100998456 CCTTAATCGA
100998466 TAAAATGACTATTTTGCC-TTTATGAGG
1 TAAAATGACTATTTTGCCTTTTAT--GG
* * *
100998493 TAAAATGATTGTTTTGCCTTTATGTGG
1 TAAAATGACTATTTTGCCTTT-TATGG
100998520 TAAAATGACTATTTTGCCCTTTTATGG
1 TAAAATGACTATTTTG-CCTTTTATGG
* *
100998547 TAAGATGACTGTTTT
1 TAAAATGACTATTTT
100998562 ACCCCTATGA
Statistics
Matches: 58, Mismatches: 8, Indels: 6
0.81 0.11 0.08
Matches are distributed among these distances:
27 49 0.84
28 7 0.12
29 2 0.03
ACGTcount: A:0.26, C:0.10, G:0.19, T:0.45
Consensus pattern (26 bp):
TAAAATGACTATTTTGCCTTTTATGG
Found at i:101006026 original size:32 final size:32
Alignment explanation
Indices: 101005985--101006053 Score: 138
Period size: 32 Copynumber: 2.2 Consensus size: 32
101005975 ACTTATCAAG
101005985 TATAACCCAATTTGCATGTTAAGTAATATGCC
1 TATAACCCAATTTGCATGTTAAGTAATATGCC
101006017 TATAACCCAATTTGCATGTTAAGTAATATGCC
1 TATAACCCAATTTGCATGTTAAGTAATATGCC
101006049 TATAA
1 TATAA
101006054 TGCATTTACA
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 37 1.00
ACGTcount: A:0.36, C:0.17, G:0.12, T:0.35
Consensus pattern (32 bp):
TATAACCCAATTTGCATGTTAAGTAATATGCC
Found at i:101008798 original size:40 final size:40
Alignment explanation
Indices: 101008738--101008921 Score: 253
Period size: 40 Copynumber: 4.6 Consensus size: 40
101008728 TATTCGAATG
* *
101008738 ATATCCGGGCTAAGTCCCGAAGGCTTTTATGCTAGTGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGTGACT
* * * * *
101008778 ATATCTGGACTAAGATCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAG-TGACT
* *
101008818 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGTGACT
* *
101008858 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGTGACT
101008898 ATATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGC
101008922 CTTGTGCGAG
Statistics
Matches: 125, Mismatches: 17, Indels: 4
0.86 0.12 0.03
Matches are distributed among these distances:
39 1 0.01
40 122 0.98
41 2 0.02
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGTGACT
Found at i:101009226 original size:22 final size:22
Alignment explanation
Indices: 101009184--101009227 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
101009174 AAAATGTGCA
* *
101009184 TATATGAAGTTATTCATTTAGC
1 TATATGAAGTTATACACTTAGC
101009206 TATATGAATGTTATAC-CTTAGC
1 TATATGAA-GTTATACACTTAGC
101009228 CGAAACTAAT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
22 13 0.68
23 6 0.32
ACGTcount: A:0.32, C:0.11, G:0.14, T:0.43
Consensus pattern (22 bp):
TATATGAAGTTATACACTTAGC
Found at i:101015969 original size:39 final size:39
Alignment explanation
Indices: 101015888--101016073 Score: 227
Period size: 39 Copynumber: 4.8 Consensus size: 39
101015878 TGGATGATAA
* * * * **
101015888 CCGGGCTAAGTCCCGAAGGCATCTGCGCTAG-GACTAGTT
1 CCGGGCTAAGT-CCGAAGGCATTTGTGCGAGTTACTAAAT
101015927 CCGGGC-AAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
1 CCGGGCTAAGT-CCGAAGGCATTTGTGCGAGTTACTAAAT
101015966 CCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAAAT
1 CCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAAAT
* *
101016005 CCGGGCTAAGTCCGAAGGCAATTGTGCGAGTTACTCTAA-
1 CCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACT-AAAT
* *
101016044 CC-GGCTATGTCCGAAGGCATTTGAGCGAGT
1 CCGGGCTAAGTCCGAAGGCATTTGTGCGAGT
101016074 AGCTATATCC
Statistics
Matches: 133, Mismatches: 11, Indels: 7
0.88 0.07 0.05
Matches are distributed among these distances:
38 46 0.35
39 81 0.61
40 6 0.05
ACGTcount: A:0.24, C:0.24, G:0.30, T:0.23
Consensus pattern (39 bp):
CCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAAAT
Found at i:101023969 original size:39 final size:40
Alignment explanation
Indices: 101023914--101024011 Score: 135
Period size: 39 Copynumber: 2.5 Consensus size: 40
101023904 TGGATGATAA
* **
101023914 CCGGGCTAAGTCCCGAAGGCATCTGCGCTAGTGACTAGTT
1 CCGGGCTAAGTCCCGAAGGCATCTGCGCGAGTGACTAAAT
* * *
101023954 CCGGGC-AAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
1 CCGGGCTAAGTCCCGAAGGCATCTGCGCGAGTGACTAAAT
101023993 CCGGGCTAAGTCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
101024012 AAATTGTGCT
Statistics
Matches: 51, Mismatches: 6, Indels: 2
0.86 0.10 0.03
Matches are distributed among these distances:
39 33 0.65
40 18 0.35
ACGTcount: A:0.22, C:0.27, G:0.31, T:0.20
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATCTGCGCGAGTGACTAAAT
Found at i:101024019 original size:40 final size:39
Alignment explanation
Indices: 101023914--101024028 Score: 133
Period size: 40 Copynumber: 2.9 Consensus size: 39
101023904 TGGATGATAA
* * * **
101023914 CCGGGCTAAGTCCCGAAGGCATCTGCGCTAGTGACTAGTT
1 CCGGGCTAAGTCCCGAAGGAAT-TGTGCTAGTTACTAAAT
* *
101023954 CCGGGC-AAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
1 CCGGGCTAAGTCCCGAAGG-AATTGTGCTAGTTACTAAAT
101023993 CCGGGCTAAGTCCCGAAGGAAATTGTGCTAGTTACT
1 CCGGGCTAAGTCCCGAAGG-AATTGTGCTAGTTACT
101024029 CTAACTGGGC
Statistics
Matches: 63, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
39 30 0.48
40 33 0.52
ACGTcount: A:0.23, C:0.24, G:0.29, T:0.23
Consensus pattern (39 bp):
CCGGGCTAAGTCCCGAAGGAATTGTGCTAGTTACTAAAT
Found at i:101028338 original size:40 final size:40
Alignment explanation
Indices: 101028294--101028445 Score: 186
Period size: 40 Copynumber: 3.9 Consensus size: 40
101028284 TATCTGGACT
101028294 AAGGCATTTGTGCGAGTTG-CTATATCCGGGCTAAGACCCG
1 AAGGCATTTGTGCGAG-TGACTATATCCGGGCTAAGACCCG
* * *
101028334 AAGGCATTTGTGCTAGCGACTATATCCGGGCTAAGTCCCG
1 AAGGCATTTGTGCGAGTGACTATATCCGGGCTAAGACCCG
* * *
101028374 AAGGCATTTATGCTAGTGACCATATCCGGGCTAAGACCCG
1 AAGGCATTTGTGCGAGTGACTATATCCGGGCTAAGACCCG
* *
101028414 AAGGC-CTTGTGCGAGT-AGTTATATCC-GGCTAA
1 AAGGCATTTGTGCGAGTGA-CTATATCCGGGCTAA
101028446 ATTCCGAAGA
Statistics
Matches: 98, Mismatches: 12, Indels: 6
0.84 0.10 0.05
Matches are distributed among these distances:
38 7 0.07
39 15 0.15
40 76 0.78
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
AAGGCATTTGTGCGAGTGACTATATCCGGGCTAAGACCCG
Found at i:101028723 original size:22 final size:22
Alignment explanation
Indices: 101028681--101028724 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
101028671 AAAATGTGCA
* *
101028681 TATATGAAGTTATTCATTTAGC
1 TATATGAAGTTATACACTTAGC
101028703 TATATGAATGTTATAC-CTTAGC
1 TATATGAA-GTTATACACTTAGC
101028725 CGAAACTAAT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
22 13 0.68
23 6 0.32
ACGTcount: A:0.32, C:0.11, G:0.14, T:0.43
Consensus pattern (22 bp):
TATATGAAGTTATACACTTAGC
Found at i:101031922 original size:45 final size:45
Alignment explanation
Indices: 101031872--101032112 Score: 294
Period size: 45 Copynumber: 5.4 Consensus size: 45
101031862 TTTTAGCCAC
** *
101031872 GGTCTTATTCA-TTTCCATCATGTTGCCATAGTGTCTTTCAACTAT
1 GGTCTTATTCATTTTTGATCATG-TGTCATAGTGTCTTTCAACTAT
* * * *
101031917 GGTCTTATTCATTTTTG-TCATGTTTCTATTGTGTCTTTCAATTGT
1 GGTCTTATTCATTTTTGATCATGTGTC-ATAGTGTCTTTCAACTAT
* *
101031962 GGTCTTATTCATTTTCGA-CATGATGTCATAATGTCTTTCAACTAT
1 GGTCTTATTCATTTTTGATCATG-TGTCATAGTGTCTTTCAACTAT
* *
101032007 GGTCTTATTCATTTTTGAT-ATAGTGTCATAATATCTTTCAACTAT
1 GGTCTTATTCATTTTTGATCAT-GTGTCATAGTGTCTTTCAACTAT
*
101032052 GGTCTTACTCATTTTTGAT-ATAGTGTCATAGTGTCTTTCAACTAT
1 GGTCTTATTCATTTTTGATCAT-GTGTCATAGTGTCTTTCAACTAT
101032097 GGTCTTATTCATTTTT
1 GGTCTTATTCATTTTT
101032113 CAAGCCAATG
Statistics
Matches: 171, Mismatches: 19, Indels: 12
0.85 0.09 0.06
Matches are distributed among these distances:
44 2 0.01
45 162 0.95
46 7 0.04
ACGTcount: A:0.21, C:0.16, G:0.14, T:0.49
Consensus pattern (45 bp):
GGTCTTATTCATTTTTGATCATGTGTCATAGTGTCTTTCAACTAT
Found at i:101034562 original size:18 final size:19
Alignment explanation
Indices: 101034529--101034565 Score: 58
Period size: 18 Copynumber: 2.0 Consensus size: 19
101034519 CCTCACAGAG
*
101034529 TTTGATTATGTTTCACAAA
1 TTTGATTATCTTTCACAAA
101034548 TTTGATT-TCTTTCACAAA
1 TTTGATTATCTTTCACAAA
101034566 AGCAAATAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 10 0.59
19 7 0.41
ACGTcount: A:0.30, C:0.14, G:0.08, T:0.49
Consensus pattern (19 bp):
TTTGATTATCTTTCACAAA
Found at i:101056348 original size:20 final size:20
Alignment explanation
Indices: 101056323--101056366 Score: 79
Period size: 20 Copynumber: 2.2 Consensus size: 20
101056313 CTTTTGAAGT
101056323 AATCGAGTCAACGGTGTAGC
1 AATCGAGTCAACGGTGTAGC
*
101056343 AATCGAGTCAGCGGTGTAGC
1 AATCGAGTCAACGGTGTAGC
101056363 AATC
1 AATC
101056367 ATCTAGAATC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.30, C:0.20, G:0.30, T:0.20
Consensus pattern (20 bp):
AATCGAGTCAACGGTGTAGC
Found at i:101060839 original size:20 final size:20
Alignment explanation
Indices: 101060814--101060865 Score: 77
Period size: 20 Copynumber: 2.6 Consensus size: 20
101060804 GAGGCAAAGC
101060814 ACACGCCCGTGTGCTTAGGG
1 ACACGCCCGTGTGCTTAGGG
* *
101060834 ACACGCCGGTGTGCTTCGGG
1 ACACGCCCGTGTGCTTAGGG
*
101060854 ACACGCCTGTGT
1 ACACGCCCGTGT
101060866 CCCTCACCCG
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 29 1.00
ACGTcount: A:0.13, C:0.31, G:0.35, T:0.21
Consensus pattern (20 bp):
ACACGCCCGTGTGCTTAGGG
Found at i:101066483 original size:15 final size:15
Alignment explanation
Indices: 101066463--101066496 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
101066453 GTAATTAAAC
101066463 AAAATAAAAATAATG
1 AAAATAAAAATAATG
* *
101066478 AAAATAAAACTAATT
1 AAAATAAAAATAATG
101066493 AAAA
1 AAAA
101066497 GTTACAACAC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.74, C:0.03, G:0.03, T:0.21
Consensus pattern (15 bp):
AAAATAAAAATAATG
Found at i:101067969 original size:133 final size:133
Alignment explanation
Indices: 101067744--101068213 Score: 385
Period size: 133 Copynumber: 3.5 Consensus size: 133
101067734 TTCCAAAGAG
* * * *
101067744 ATATTCGATTGTTTTGAACAAACGAGAGATTGCAACCCAGCGCGATAGGGCACGACTCTCGAATT
1 ATATTCGATTGTTTTGAACAAACGAGAAATTGCAACCCAGCACGATAGGGCACGATTCCCGAATT
* * * *
101067809 GCCAAACATCGAACATAGCCTTTGTTTTAAAGGGTTTTCTTAAAAGACATGAGTGAAAACCT-AA
66 GTCAAACATCCAACATAGCCTTTGTTTTAAAGGATTTTCTTAAAAGACATGAATG-AAACCTCAA
101067873 AGGA
130 AGGA
* ** *
101067877 ATATTCGATCGTTTTGAACAAACGAGAAATCACAACCCAGCACGATAGGGCATGATTCCCGAATT
1 ATATTCGATTGTTTTGAACAAACGAGAAATTGCAACCCAGCACGATAGGGCACGATTCCCGAATT
* * * * * * * * *
101067942 GTCAAACA-CCAAGTATTG-CTTTCGTTTTAGAGGATTTTTTTAGAAGACCTGAATGGAATCTCG
66 GTCAAACATCCAA-CATAGCCTTT-GTTTTAAAGGATTTTCTTAAAAGACATGAATGAAACCTCA
*
101068005 AAGGG
129 AAGGA
* * * * *
101068010 ATATTTGATTATTTTGAGCAAACGAGAAATTGCAACCCAACAC-ATTAGGGTACGATTCCGCGAA
1 ATATTCGATTGTTTTGAACAAACGAGAAATTGCAACCCAGCACGA-TAGGGCACGATTCC-CGAA
* * * * *** * * * ** **
101068074 TTGTCAAATATCAAACTTTGCCTCCATTTTAAA-GAATTT-TTAAAAGGCATGAGTGAAAGTTTG
64 TTGTCAAACATCCAACATAGCCTTTGTTTTAAAGGATTTTCTTAAAAGACATGAATGAAACCTCA
*
101068137 AAGGG
129 AAGGA
* * * * * * * *
101068142 ATATTCGATTATTTCGAGCAAACGCGATATTGCAACCCAACACGTTAGGGCACTATTCCGCGAAT
1 ATATTCGATTGTTTTGAACAAACGAGAAATTGCAACCCAGCACGATAGGGCACGATTCC-CGAAT
*
101068207 TGCCAAA
65 TGTCAAA
101068214 TATCGAATCT
Statistics
Matches: 273, Mismatches: 56, Indels: 17
0.79 0.16 0.05
Matches are distributed among these distances:
132 96 0.35
133 150 0.55
134 22 0.08
135 5 0.02
ACGTcount: A:0.34, C:0.19, G:0.20, T:0.27
Consensus pattern (133 bp):
ATATTCGATTGTTTTGAACAAACGAGAAATTGCAACCCAGCACGATAGGGCACGATTCCCGAATT
GTCAAACATCCAACATAGCCTTTGTTTTAAAGGATTTTCTTAAAAGACATGAATGAAACCTCAAA
GGA
Found at i:101068174 original size:132 final size:132
Alignment explanation
Indices: 101068004--101068249 Score: 359
Period size: 132 Copynumber: 1.9 Consensus size: 132
101067994 ATGGAATCTC
* * *
101068004 GAAGGGATATTTGATTATTTTGAGCAAACGAGAAATTGCAACCCAACACATTAGGGTACGATTCC
1 GAAGGGATATTCGATTATTTCGAGCAAACGAGAAATTGCAACCCAACACATTAGGGCACGATTCC
* *
101068069 GCGAATTGTCAAATATCAAA-CTTTGCCTCCATTTTAAAGAATTTTTAAAAGGCATGAGTGAAAG
66 GCGAATTGCCAAATATCAAATC-TCGCCTCCATTTTAAAGAATTTTTAAAAGGCATGAGTGAAAG
101068133 TTT
130 TTT
* * * *
101068136 GAAGGGATATTCGATTATTTCGAGCAAACGCGATATTGCAACCCAACACGTTAGGGCACTATTCC
1 GAAGGGATATTCGATTATTTCGAGCAAACGAGAAATTGCAACCCAACACATTAGGGCACGATTCC
* * * *
101068201 GCGAATTGCCAAATATCGAATCTCGTCTTCGTTTTAAAGAATTTTTAAA
66 GCGAATTGCCAAATATCAAATCTCGCCTCCATTTTAAAGAATTTTTAAA
101068250 TGTATACTCA
Statistics
Matches: 100, Mismatches: 13, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
132 99 0.99
133 1 0.01
ACGTcount: A:0.34, C:0.17, G:0.19, T:0.30
Consensus pattern (132 bp):
GAAGGGATATTCGATTATTTCGAGCAAACGAGAAATTGCAACCCAACACATTAGGGCACGATTCC
GCGAATTGCCAAATATCAAATCTCGCCTCCATTTTAAAGAATTTTTAAAAGGCATGAGTGAAAGT
TT
Found at i:101070732 original size:10 final size:10
Alignment explanation
Indices: 101070717--101070744 Score: 56
Period size: 10 Copynumber: 2.8 Consensus size: 10
101070707 ACGAAGGCGT
101070717 TGGAGGCTGC
1 TGGAGGCTGC
101070727 TGGAGGCTGC
1 TGGAGGCTGC
101070737 TGGAGGCT
1 TGGAGGCT
101070745 TGTTGTGACG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 18 1.00
ACGTcount: A:0.11, C:0.18, G:0.50, T:0.21
Consensus pattern (10 bp):
TGGAGGCTGC
Found at i:101071172 original size:44 final size:44
Alignment explanation
Indices: 101071144--101071818 Score: 857
Period size: 44 Copynumber: 15.3 Consensus size: 44
101071134 CTGACAATAT
* * **
101071144 AGAGACACCAAATCTGCTATCTTCGATCTGCTTTCCGCCAATAC
1 AGAGACGCCAAATCTGCTATCTTCGATCTGCTCTCCGCCGCTAC
* ** ** *
101071188 AGAGACGCCAAATTTGCTATCTTCGATCTGCTCTTTGCCAATAT
1 AGAGACGCCAAATCTGCTATCTTCGATCTGCTCTCCGCCGCTAC
* * * **
101071232 AGAGACACCAAATCTGCTATCTTCGATCTGC-CATCTGACAATAC
1 AGAGACGCCAAATCTGCTATCTTCGATCTGCTC-TCCGCCGCTAC
* * * **
101071276 AAAGACGCCAAATCTACTATCTTCGATATGCTCTCCGCCAATAC
1 AGAGACGCCAAATCTGCTATCTTCGATCTGCTCTCCGCCGCTAC
* ** **
101071320 AGAGACGCCAAATCTGCTATCTTCGATCTACTCTCCATCAATAC
1 AGAGACGCCAAATCTGCTATCTTCGATCTGCTCTCCGCCGCTAC
* *
101071364 AGAGACGCCAAATCTGCTATCTTCGATCTGCTATCCGTCGCTAC
1 AGAGACGCCAAATCTGCTATCTTCGATCTGCTCTCCGCCGCTAC
*
101071408 AGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGCTAC
1 AGAGACGCCAAATCTGCTATCTTCGATCTGCTCTCCGCCGCTAC
* *
101071452 AGAGACGCCAAATCTGTTATCTTCGATTTGCTCTCCGCCGCTAC
1 AGAGACGCCAAATCTGCTATCTTCGATCTGCTCTCCGCCGCTAC
* * * *
101071496 AAAGACGCCAAATCTGTTATCTTCGATCTGTTCTCCGTCGCTAC
1 AGAGACGCCAAATCTGCTATCTTCGATCTGCTCTCCGCCGCTAC
* ***
101071540 AGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCTATCGCTAC
1 AGAGACGCCAAATCTGCTATCTTCGATCTGCTCTCCGCCGCTAC
* * * * * *
101071584 AGAGATGCCAAATATGTTATTTTCGATCTGTTCTCTGCCGCTAC
1 AGAGACGCCAAATCTGCTATCTTCGATCTGCTCTCCGCCGCTAC
* *
101071628 AGAGACGCCAAATCTGTTATCTTTGATCTGCTCTCCGCCGCTAC
1 AGAGACGCCAAATCTGCTATCTTCGATCTGCTCTCCGCCGCTAC
*
101071672 AGAGACGCCAAATCTGCTATCTTCGATCTGCTCTTCGCCGCTAC
1 AGAGACGCCAAATCTGCTATCTTCGATCTGCTCTCCGCCGCTAC
**
101071716 AGAGACGCCAAATCTGCTATCTTCGATCTGCTCTCTACCGCTAC
1 AGAGACGCCAAATCTGCTATCTTCGATCTGCTCTCCGCCGCTAC
* * *
101071760 AGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCTGCTAT
1 AGAGACGCCAAATCTGCTATCTTCGATCTGCTCTCCGCCGCTAC
*
101071804 AGAGATGCCAAATCT
1 AGAGACGCCAAATCT
101071819 ATTATCTGCT
Statistics
Matches: 565, Mismatches: 64, Indels: 4
0.89 0.10 0.01
Matches are distributed among these distances:
43 1 0.00
44 563 1.00
45 1 0.00
ACGTcount: A:0.24, C:0.30, G:0.16, T:0.29
Consensus pattern (44 bp):
AGAGACGCCAAATCTGCTATCTTCGATCTGCTCTCCGCCGCTAC
Found at i:101076089 original size:27 final size:27
Alignment explanation
Indices: 101076050--101076189 Score: 162
Period size: 27 Copynumber: 5.2 Consensus size: 27
101076040 GGAAGCGTCT
*
101076050 TGGTGGCTATGCCACAATTATCTGATC
1 TGGTGGCTCTGCCACAATTATCTGATC
101076077 TGGTGGCTCTGCCAC-ATATATCTG-TCC
1 TGGTGGCTCTGCCACAAT-TATCTGAT-C
* *
101076104 TGGTGGTTGTGCCACAATTATCTGATC
1 TGGTGGCTCTGCCACAATTATCTGATC
* *
101076131 TCGTGGCTCTGCCAC-ATATATCTGTTC
1 TGGTGGCTCTGCCACAAT-TATCTGATC
*
101076158 TGGTGGCTTTGCCACAA-TATCTGTATC
1 TGGTGGCTCTGCCACAATTATCTG-ATC
101076185 TGGTG
1 TGGTG
101076190 ACTTCATCAC
Statistics
Matches: 96, Mismatches: 10, Indels: 14
0.80 0.08 0.12
Matches are distributed among these distances:
26 11 0.11
27 81 0.84
28 4 0.04
ACGTcount: A:0.17, C:0.24, G:0.24, T:0.36
Consensus pattern (27 bp):
TGGTGGCTCTGCCACAATTATCTGATC
Found at i:101076137 original size:54 final size:53
Alignment explanation
Indices: 101076050--101076185 Score: 202
Period size: 54 Copynumber: 2.5 Consensus size: 53
101076040 GGAAGCGTCT
* *
101076050 TGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCTGTCC
1 TGGTGG-TTTGCCACAATTATCTGATCTCGTGGCTCTGCCACATATATCTGTCC
*
101076104 TGGTGGTTGTGCCACAATTATCTGATCTCGTGGCTCTGCCACATATATCTGTTC
1 TGGTGGTT-TGCCACAATTATCTGATCTCGTGGCTCTGCCACATATATCTGTCC
101076158 TGGTGGCTTTGCCACAA-TATCTGTATCT
1 TGGTGG-TTTGCCACAATTATCTG-ATCT
101076186 GGTGACTTCA
Statistics
Matches: 76, Mismatches: 3, Indels: 6
0.89 0.04 0.07
Matches are distributed among these distances:
53 7 0.09
54 67 0.88
55 2 0.03
ACGTcount: A:0.18, C:0.24, G:0.22, T:0.36
Consensus pattern (53 bp):
TGGTGGTTTGCCACAATTATCTGATCTCGTGGCTCTGCCACATATATCTGTCC
Found at i:101076200 original size:27 final size:26
Alignment explanation
Indices: 101076142--101076207 Score: 78
Period size: 27 Copynumber: 2.5 Consensus size: 26
101076132 CGTGGCTCTG
* **
101076142 CCACATATATCTGTTCTGGTGGCTTTG
1 CCACA-ATATCTGTTCTGGTGACTTCA
101076169 CCACAATATCTGTATCTGGTGACTTCA
1 CCACAATATCTGT-TCTGGTGACTTCA
*
101076196 TCACAATATCTG
1 CCACAATATCTG
101076208 GCAGCCTCGC
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
26 8 0.24
27 26 0.76
ACGTcount: A:0.23, C:0.24, G:0.17, T:0.36
Consensus pattern (26 bp):
CCACAATATCTGTTCTGGTGACTTCA
Found at i:101076201 original size:81 final size:79
Alignment explanation
Indices: 101076052--101076207 Score: 183
Period size: 81 Copynumber: 1.9 Consensus size: 79
101076042 AAGCGTCTTG
* *
101076052 GTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCTGTCCTGGTGGTTGTGCC
1 GTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCTGTCCTGGTGCTTAT-CC
101076117 ACAATTATCTGATCTC
65 ACAA-TATCTGATCTC
* * * *
101076133 GTGGCTCTGCCAC-ATATATCTGTTCTGGTGGCTTTGCCACA-ATATCTGTATCTGGTGACTTCA
1 GTGGCTATGCCACAAT-TATCTGATCTGGTGGCTCTGCCACATATATCTGT-CCTGGTG-CTT-A
101076196 T-CACAATATCTG
62 TCCACAATATCTG
101076208 GCAGCCTCGC
Statistics
Matches: 65, Mismatches: 6, Indels: 9
0.81 0.08 0.11
Matches are distributed among these distances:
80 16 0.25
81 46 0.71
82 2 0.03
83 1 0.02
ACGTcount: A:0.19, C:0.24, G:0.21, T:0.35
Consensus pattern (79 bp):
GTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCTGTCCTGGTGCTTATCCA
CAATATCTGATCTC
Found at i:101077527 original size:24 final size:22
Alignment explanation
Indices: 101077493--101077549 Score: 96
Period size: 22 Copynumber: 2.6 Consensus size: 22
101077483 GTGTCAAAGA
101077493 CACACGGGTGTGTCCCTATGTC
1 CACACGGGTGTGTCCCTATGTC
*
101077515 CACACGGGTGTGTCCTTATGTC
1 CACACGGGTGTGTCCCTATGTC
*
101077537 CACACGGGCGTGT
1 CACACGGGTGTGT
101077550 GACCCTGTTT
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
22 33 1.00
ACGTcount: A:0.14, C:0.30, G:0.30, T:0.26
Consensus pattern (22 bp):
CACACGGGTGTGTCCCTATGTC
Found at i:101080737 original size:75 final size:75
Alignment explanation
Indices: 101080590--101081003 Score: 537
Period size: 75 Copynumber: 5.5 Consensus size: 75
101080580 AGCGCCGGGC
* * * * * *
101080590 GCAATTATCGTTGTTTTATCCAACTAGAGCTAGGCTTACAATTATTATCGTCAGCT-TATCCAAC
1 GCAAATATTGTTGGTTTATCCAACTAGAGCTGGGCTCACAATTATTATCGTCAG-TATATCCGAC
*
101080654 TATAACTGGGT
65 TAGAACTGGGT
* * * * * *
101080665 GCAAATATTGATGGTTTATCCAACTAGAGTTGGGCTCACAATTATTATCGTTATTATACCCGATT
1 GCAAATATTGTTGGTTTATCCAACTAGAGCTGGGCTCACAATTATTATCGTCAGTATATCCGACT
*
101080730 AGCACTGGGT
66 AGAACTGGGT
* * *
101080740 GCAAATATTGTTGGATTATCCAACTAGAGCTGGGCTCATAATTATTATCGTCGGTATATCCGACT
1 GCAAATATTGTTGGTTTATCCAACTAGAGCTGGGCTCACAATTATTATCGTCAGTATATCCGACT
*
101080805 AGCACTGGGT
66 AGAACTGGGT
* * *
101080815 GCAAATATTGTTGGTTTATCCAACTAGAGATGGGCTCACAATTATTATCATTAGTATATCCGACT
1 GCAAATATTGTTGGTTTATCCAACTAGAGCTGGGCTCACAATTATTATCGTCAGTATATCCGACT
*
101080880 AGAATTGGGT
66 AGAACTGGGT
* *
101080890 GCAAATATTGTTAGTTTATCCAACTAGAGCTGGGCTCACAATTATTA-CAGTCGGTATATCCGAC
1 GCAAATATTGTTGGTTTATCCAACTAGAGCTGGGCTCACAATTATTATC-GTCAGTATATCCGAC
*
101080954 TAGTACTGGGT
65 TAGAACTGGGT
* * *
101080965 GTAAATATCGTT-GTTTATCCAACAAGAGCTGGGCTCACA
1 GCAAATATTGTTGGTTTATCCAACTAGAGCTGGGCTCACA
101081004 TTCAATACCG
Statistics
Matches: 296, Mismatches: 41, Indels: 5
0.87 0.12 0.01
Matches are distributed among these distances:
74 28 0.09
75 268 0.91
ACGTcount: A:0.29, C:0.18, G:0.20, T:0.33
Consensus pattern (75 bp):
GCAAATATTGTTGGTTTATCCAACTAGAGCTGGGCTCACAATTATTATCGTCAGTATATCCGACT
AGAACTGGGT
Found at i:101080773 original size:35 final size:35
Alignment explanation
Indices: 101080645--101080923 Score: 122
Period size: 35 Copynumber: 7.5 Consensus size: 35
101080635 TATCGTCAGC
* * * *
101080645 TTATCCAACTATAACTGGGTGCAAATATTGATGGT
1 TTATCCAACTAGAGCTGGGTGCAAATATTGTTGGA
* * * *
101080680 TTATCCAACTAGAGTTGGGCT-CACAATTATTATCGTTA
1 TTATCCAACTAGAGCTGGG-TGCA-AA-TATTGTTG-GA
* *
101080718 TTATACCCGATTAGCA-CTGGGTGCAAATATTGTTGGA
1 TTAT--CCAACTAG-AGCTGGGTGCAAATATTGTTGGA
*
101080755 TTATCCAACTAGAGCTGGGCT-CATAATTATTATCGTCGG-
1 TTATCCAACTAGAGCTGGG-TGCA-AA-TA-T-T-GTTGGA
* *
101080794 TATATCCGACTAGCA-CTGGGTGCAAATATTGTTGGT
1 T-TATCCAACTAG-AGCTGGGTGCAAATATTGTTGGA
* * *
101080830 TTATCCAACTAGAGATGGGCT-CACAATTATTATCAT-TA
1 TTATCCAACTAGAGCTGGG-TGCA-AA-TATTGT--TGGA
* ** * *
101080868 GTATATCCGACTAGAATTGGGTGCAAATATTGTTAGT
1 -T-TATCCAACTAGAGCTGGGTGCAAATATTGTTGGA
101080905 TTATCCAACTAGAGCTGGG
1 TTATCCAACTAGAGCTGGG
101080924 CTCACAATTA
Statistics
Matches: 182, Mismatches: 33, Indels: 58
0.67 0.12 0.21
Matches are distributed among these distances:
34 2 0.01
35 66 0.36
36 13 0.07
37 18 0.10
38 18 0.10
39 13 0.07
40 50 0.27
41 2 0.01
ACGTcount: A:0.29, C:0.17, G:0.21, T:0.34
Consensus pattern (35 bp):
TTATCCAACTAGAGCTGGGTGCAAATATTGTTGGA
Found at i:101080813 original size:40 final size:39
Alignment explanation
Indices: 101080593--101081001 Score: 169
Period size: 40 Copynumber: 10.9 Consensus size: 39
101080583 GCCGGGCGCA
* * * *
101080593 ATTATCGTTGTTTTATCCAACTAGAGCTAGGCTTACAATT
1 ATTATCGTTGGTATATCCAACTAGAGCTGGGCTCA-AATT
* * * *
101080633 ATTATCGTCAGCT-TATCCAACTATAACTGGG-TGCAAA-T
1 ATTATCGT-TGGTATATCCAACTAGAGCTGGGCT-CAAATT
* * *
101080671 A-T-T-GATGGTTTATCCAACTAGAGTTGGGCTCACAATT
1 ATTATCGTTGGTATATCCAACTAGAGCTGGGCTCA-AATT
** * * *
101080708 ATTATCGTTATTATACCCGATTAGCA-CTGGG-TGCAAA-T
1 ATTATCGTTGGTATATCCAACTAG-AGCTGGGCT-CAAATT
101080746 A-T-T-GTTGG-ATTATCCAACTAGAGCTGGGCTCATAATT
1 ATTATCGTTGGTA-TATCCAACTAGAGCTGGGCTCA-AATT
* *
101080783 ATTATCGTCGGTATATCCGACTAGCA-CTGGG-TGCAAA-T
1 ATTATCGTTGGTATATCCAACTAG-AGCTGGGCT-CAAATT
* *
101080821 A-T-T-GTTGGTTTATCCAACTAGAGATGGGCTCACAATT
1 ATTATCGTTGGTATATCCAACTAGAGCTGGGCTCA-AATT
* * * **
101080858 ATTATCATTAGTATATCCGACTAGAATTGGG-TGCAAA-T
1 ATTATCGTTGGTATATCCAACTAGAGCTGGGCT-CAAATT
* *
101080896 A-T-T-GTTAGTTTATCCAACTAGAGCTGGGCTCACAATT
1 ATTATCGTTGGTATATCCAACTAGAGCTGGGCTCA-AATT
* * **
101080933 ATTA-CAGTCGGTATATCCGACTAGTA-CTGGG-TGTAA--
1 ATTATC-GTTGGTATATCCAACTAG-AGCTGGGCTCAAATT
* *
101080969 A-TATCGTT-GTTTATCCAACAAGAGCTGGGCTCA
1 ATTATCGTTGGTATATCCAACTAGAGCTGGGCTCA
101081002 CATTCAATAC
Statistics
Matches: 274, Mismatches: 54, Indels: 87
0.66 0.13 0.21
Matches are distributed among these distances:
33 1 0.00
34 21 0.08
35 84 0.31
36 18 0.07
37 12 0.04
38 14 0.05
39 16 0.06
40 102 0.37
41 6 0.02
ACGTcount: A:0.28, C:0.18, G:0.20, T:0.34
Consensus pattern (39 bp):
ATTATCGTTGGTATATCCAACTAGAGCTGGGCTCAAATT
Found at i:101086894 original size:27 final size:27
Alignment explanation
Indices: 101086860--101086978 Score: 175
Period size: 27 Copynumber: 4.4 Consensus size: 27
101086850 TGGATAAGTT
*
101086860 GTAGAATTACCGAAATACCCCTGTAAG
1 GTAGAATTACCGAAATACCCCTGTAGG
101086887 GTAGAATTACCGAAATACCCCTGTAGG
1 GTAGAATTACCGAAATACCCCTGTAGG
*
101086914 GTAGAATTACCGAAATACCCTTGTAGG
1 GTAGAATTACCGAAATACCCCTGTAGG
* * * *
101086941 GTAGAATTACCCATATACCCTTGTGGG
1 GTAGAATTACCGAAATACCCCTGTAGG
*
101086968 GTAAAATTACC
1 GTAGAATTACC
101086979 TTTTTGCCCC
Statistics
Matches: 86, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 86 1.00
ACGTcount: A:0.34, C:0.21, G:0.20, T:0.25
Consensus pattern (27 bp):
GTAGAATTACCGAAATACCCCTGTAGG
Found at i:101087373 original size:16 final size:16
Alignment explanation
Indices: 101087352--101087442 Score: 119
Period size: 16 Copynumber: 5.7 Consensus size: 16
101087342 ATGGGCCGAA
* * *
101087352 AACGGGCCAATGGTCC
1 AACGGGCCCACGGGCC
* * *
101087368 AACGGGCCAATGGTCC
1 AACGGGCCCACGGGCC
101087384 AACGGGCCCACGGGCC
1 AACGGGCCCACGGGCC
101087400 AACGGGCCCACGGGCC
1 AACGGGCCCACGGGCC
*
101087416 AACAGGCCCACGGGCC
1 AACGGGCCCACGGGCC
101087432 AACGGGCCCAC
1 AACGGGCCCAC
101087443 TTTGGTAAAA
Statistics
Matches: 70, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 70 1.00
ACGTcount: A:0.23, C:0.40, G:0.33, T:0.04
Consensus pattern (16 bp):
AACGGGCCCACGGGCC
Done.