Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A06
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 115140250
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2234201 characters in sequence are not A, C, G, or T
File 298 of 345
Found at i:101087377 original size:8 final size:8
Alignment explanation
Indices: 101087352--101087439 Score: 104
Period size: 8 Copynumber: 11.0 Consensus size: 8
101087342 ATGGGCCGAA
101087352 AACGGGCC
1 AACGGGCC
* *
101087360 AATGGTCC
1 AACGGGCC
101087368 AACGGGCC
1 AACGGGCC
* *
101087376 AATGGTCC
1 AACGGGCC
101087384 AACGGGCC
1 AACGGGCC
*
101087392 CACGGGCC
1 AACGGGCC
101087400 AACGGGCC
1 AACGGGCC
*
101087408 CACGGGCC
1 AACGGGCC
*
101087416 AACAGGCC
1 AACGGGCC
*
101087424 CACGGGCC
1 AACGGGCC
101087432 AACGGGCC
1 AACGGGCC
101087440 CACTTTGGTA
Statistics
Matches: 64, Mismatches: 16, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
8 64 1.00
ACGTcount: A:0.23, C:0.39, G:0.34, T:0.05
Consensus pattern (8 bp):
AACGGGCC
Found at i:101094457 original size:27 final size:27
Alignment explanation
Indices: 101094427--101094489 Score: 81
Period size: 27 Copynumber: 2.3 Consensus size: 27
101094417 GGATAAGTTG
*
101094427 TAGAATTACCAAAATACCCCTGTAGGA
1 TAGAATTACCAAAATACCCCTATAGGA
** *
101094454 TAGAATTACTGAAATACCCCTATAGGG
1 TAGAATTACCAAAATACCCCTATAGGA
*
101094481 TAAAATTAC
1 TAGAATTAC
101094490 TGAGATACCC
Statistics
Matches: 31, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 31 1.00
ACGTcount: A:0.41, C:0.19, G:0.14, T:0.25
Consensus pattern (27 bp):
TAGAATTACCAAAATACCCCTATAGGA
Found at i:101094490 original size:27 final size:27
Alignment explanation
Indices: 101094438--101094516 Score: 104
Period size: 27 Copynumber: 2.9 Consensus size: 27
101094428 AGAATTACCA
* *
101094438 AAATACCCCTGTAGGATAGAATTACTG
1 AAATACCCCTGTAGGGTAAAATTACTG
*
101094465 AAATACCCCTATAGGGTAAAATTACTG
1 AAATACCCCTGTAGGGTAAAATTACTG
* * *
101094492 AGATACCCTTGTGGGGTAAAATTAC
1 AAATACCCCTGTAGGGTAAAATTAC
101094517 CATTTTGCCC
Statistics
Matches: 45, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 45 1.00
ACGTcount: A:0.37, C:0.18, G:0.19, T:0.27
Consensus pattern (27 bp):
AAATACCCCTGTAGGGTAAAATTACTG
Found at i:101095196 original size:27 final size:27
Alignment explanation
Indices: 101095156--101095239 Score: 107
Period size: 27 Copynumber: 3.1 Consensus size: 27
101095146 AGCAGCCTCG
101095156 CTGTAATCTGGTGGCCTCGCCACATATAT
1 CTGT-ATCTGGTGGCCTCGCCACA-ATAT
*
101095185 CTGT-TCTGGTGGCCTAGCCACAATAT
1 CTGTATCTGGTGGCCTCGCCACAATAT
* * *
101095211 CTGTATCTGGTGACTTCGTCACAATAT
1 CTGTATCTGGTGGCCTCGCCACAATAT
101095238 CT
1 CT
101095240 AGCAGCCTCG
Statistics
Matches: 49, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
26 8 0.16
27 37 0.76
29 4 0.08
ACGTcount: A:0.20, C:0.26, G:0.20, T:0.33
Consensus pattern (27 bp):
CTGTATCTGGTGGCCTCGCCACAATAT
Found at i:101097402 original size:75 final size:75
Alignment explanation
Indices: 101097309--101097714 Score: 598
Period size: 75 Copynumber: 5.4 Consensus size: 75
101097299 CGTAATTACC
* * *
101097309 GTTGGTTTATCCAACTAGAGCTGGGCTCAGAATTATTATCATCGGTATATCCGACTAGAACTAGG
1 GTTGGTTTATCCAACTAGAGCTGGGCTCACAATTATTATCATCGGTATATCCGACTAGCACTGGG
101097374 TGCAAATATT
66 TGCAAATATT
* * *
101097384 GTTGGTTTATCCAACTAGAGTTAGGCTCACAATTATTATCATCGGTATATCCGACTAGCATTGGG
1 GTTGGTTTATCCAACTAGAGCTGGGCTCACAATTATTATCATCGGTATATCCGACTAGCACTGGG
101097449 TGCAAATATT
66 TGCAAATATT
* * ** * * *
101097459 GTTGGTTTATCCAACTAGAGTTGGGCTCATAATTATTATTGTCGGTATATCTGACTAGCACTAGA
1 GTTGGTTTATCCAACTAGAGCTGGGCTCACAATTATTATCATCGGTATATCCGACTAGCACTGGG
*
101097524 TGCAAAAATT
66 TGCAAATATT
* *
101097534 GTTGGTTTATCCAACTAGAGCTGGGTTCACAATTATTATCATCGGTATATTCGACTAGCACTGGG
1 GTTGGTTTATCCAACTAGAGCTGGGCTCACAATTATTATCATCGGTATATCCGACTAGCACTGGG
*
101097599 TGAAAATATT
66 TGCAAATATT
* *
101097609 GTTGGTTTATCCAACTAGAGCTGGGCTCACAATTATTAT-AGTCAGTATATCCGACTAGAACTGG
1 GTTGGTTTATCCAACTAGAGCTGGGCTCACAATTATTATCA-TCGGTATATCCGACTAGCACTGG
*
101097673 GTGCAAATATC
65 GTGCAAATATT
* *
101097684 GTTGATTTATCCAACTAGAGTTGGGCTCACA
1 GTTGGTTTATCCAACTAGAGCTGGGCTCACA
101097715 TTCAATACCA
Statistics
Matches: 296, Mismatches: 34, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
74 1 0.00
75 295 1.00
ACGTcount: A:0.29, C:0.17, G:0.21, T:0.33
Consensus pattern (75 bp):
GTTGGTTTATCCAACTAGAGCTGGGCTCACAATTATTATCATCGGTATATCCGACTAGCACTGGG
TGCAAATATT
Found at i:101099866 original size:30 final size:30
Alignment explanation
Indices: 101099801--101099867 Score: 80
Period size: 30 Copynumber: 2.2 Consensus size: 30
101099791 GGGGCAGACT
**
101099801 GTGTGTCGTACATGGCCTAGACACACCCCC
1 GTGTGTCACACATGGCCTAGACACACCCCC
* * **
101099831 ATGTGTCACACATGGTCTAGACACATTCCC
1 GTGTGTCACACATGGCCTAGACACACCCCC
101099861 GTGTGTC
1 GTGTGTC
101099868 TACTCGTATG
Statistics
Matches: 30, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.21, C:0.31, G:0.22, T:0.25
Consensus pattern (30 bp):
GTGTGTCACACATGGCCTAGACACACCCCC
Found at i:101103202 original size:48 final size:48
Alignment explanation
Indices: 101103010--101103232 Score: 201
Period size: 48 Copynumber: 4.8 Consensus size: 48
101103000 TGTACGATCT
* * * * * *
101103010 CATGAAAGACCATGTCTAGGACATGGCTTTGGCATCGATATGTAATTT
1 CATGTAAGACCATGTCTGGGACATGACATTGGCATCGATATGTGATTC
* *
101103058 CATGTAAGACCATAG-CTGGG-C-T---ATCGACATCGATATGTGA-TC
1 CATGTAAGACCAT-GTCTGGGACATGACATTGGCATCGATATGTGATTC
** ** *
101103100 CTATGTAAGACCATGTCTGGGACATGACATTGGCATCGACCT-ACAATC
1 C-ATGTAAGACCATGTCTGGGACATGACATTGGCATCGATATGTGATTC
* *
101103148 TTATGTAAGATCATGTCTGGGACATGACATTGGCATCGATATGTGATTC
1 -CATGTAAGACCATGTCTGGGACATGACATTGGCATCGATATGTGATTC
* * *
101103197 CATGTAAGACCATATCTGGGATATGACATTAGCATC
1 CATGTAAGACCATGTCTGGGACATGACATTGGCATC
101103233 CTACCATGTG
Statistics
Matches: 139, Mismatches: 25, Indels: 22
0.75 0.13 0.12
Matches are distributed among these distances:
42 3 0.02
43 31 0.22
44 1 0.01
45 1 0.01
46 1 0.01
47 2 0.01
48 96 0.69
49 4 0.03
ACGTcount: A:0.29, C:0.19, G:0.22, T:0.29
Consensus pattern (48 bp):
CATGTAAGACCATGTCTGGGACATGACATTGGCATCGATATGTGATTC
Found at i:101107350 original size:50 final size:49
Alignment explanation
Indices: 101107285--101107526 Score: 236
Period size: 50 Copynumber: 4.9 Consensus size: 49
101107275 ATTGTGAGTA
* * *
101107285 CACATGTGTAGTACTAAGTGCAGGCTACTACATGTACCATATTGTTAAGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTT-GGT
* * * * *
101107335 CGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACTTA-A-TGACTTCGAT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTAC-CAGATTG--TT-GGT
* * * * *
101107386 CACCTATGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTGAGGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGT-TGGT
* * *
101107436 CACTTGTGTAGCACTAAGTGCAGGCTACTACGTGTACCGGATTGTTGGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTGGT
* * * *
101107485 CGCATGTGTAGTACTAAGTGCAAGCTACTATGTGTATCAGAT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGAT
101107527 AGCTTCGGCT
Statistics
Matches: 154, Mismatches: 32, Indels: 13
0.77 0.16 0.07
Matches are distributed among these distances:
49 40 0.26
50 77 0.50
51 36 0.23
52 1 0.01
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.31
Consensus pattern (49 bp):
CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTGGT
Found at i:101114855 original size:51 final size:48
Alignment explanation
Indices: 101114734--101114961 Score: 203
Period size: 49 Copynumber: 4.6 Consensus size: 48
101114724 ATTGTGAGTA
* *
101114734 CACGTGT-TGGTACTAAGTGCAGGCTTA-TACGTGTAC-CATACTGTTAAGT
1 CACGTGTGTAGTACTAAGTGCAGGC-TACTACGTGTACTCA-A-TGTT-GGT
* * * * *
101114783 CGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACTCAATGACTTCGAT
1 CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACTCAATG--TT-GGT
* * *
101114834 CACGTATGTAGTACTAAGTGCAAGCTACTACGTGTA-TCAGATGTGAGGT
1 CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACTCA-ATGT-TGGT
* * *
101114883 CACGTGTGTAGTACTAAGTGTAGGCTACTACGTGTACTGGATTGTTGGT
1 CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACT-CAATGTTGGT
* *
101114932 CGCATGTGTAGTACTAAGTGCAGGCTACTA
1 CACGTGTGTAGTACTAAGTGCAGGCTACTA
101114962 TGAGTATCAG
Statistics
Matches: 145, Mismatches: 25, Indels: 18
0.77 0.13 0.10
Matches are distributed among these distances:
49 75 0.52
50 31 0.21
51 39 0.27
ACGTcount: A:0.25, C:0.18, G:0.26, T:0.31
Consensus pattern (48 bp):
CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACTCAATGTTGGT
Found at i:101119940 original size:40 final size:40
Alignment explanation
Indices: 101119895--101120060 Score: 271
Period size: 40 Copynumber: 4.2 Consensus size: 40
101119885 AGATTTAGCT
* * *
101119895 GGATATAG-CAACTCGCACAAATGCCTTCGGGTCTTAGGCC
1 GGATATAGTCAA-TAGCACAAATGCCTTCGGGACTTAGCCC
101119935 GGATATAGTCAATAGCACAAATGCCTTCGGGACTTAGCCC
1 GGATATAGTCAATAGCACAAATGCCTTCGGGACTTAGCCC
101119975 GGATATAGTCAATAGCACAAATGCCTTCGGGACTTAGCCC
1 GGATATAGTCAATAGCACAAATGCCTTCGGGACTTAGCCC
* *
101120015 GAATATAGTCACTAGCACAAATGCCTTCGGGACTTAGCCC
1 GGATATAGTCAATAGCACAAATGCCTTCGGGACTTAGCCC
101120055 GGATAT
1 GGATAT
101120061 CATTCGAATA
Statistics
Matches: 119, Mismatches: 6, Indels: 2
0.94 0.05 0.02
Matches are distributed among these distances:
40 116 0.97
41 3 0.03
ACGTcount: A:0.29, C:0.25, G:0.23, T:0.23
Consensus pattern (40 bp):
GGATATAGTCAATAGCACAAATGCCTTCGGGACTTAGCCC
Found at i:101122713 original size:27 final size:26
Alignment explanation
Indices: 101122678--101122789 Score: 125
Period size: 27 Copynumber: 4.2 Consensus size: 26
101122668 AGCATGGCTG
* *
101122678 CCAGAACAGATAATGTGACAGAGTCA
1 CCAGAACAGATAATGTGGCAGAGCCA
*
101122704 CCAGATACAGATAGTCGTGGCAGAGCCA
1 CCAGA-ACAGATAAT-GTGGCAGAGCCA
*
101122732 CCAGAACAGAAATATGTGGCAGAGCCA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
* * *
101122759 CCGGATCAGATAATTGTGGCATAGCCA
1 CCAGAACAGATAA-TGTGGCAGAGCCA
101122786 CCAG
1 CCAG
101122790 GACGCTTCCT
Statistics
Matches: 72, Mismatches: 10, Indels: 7
0.81 0.11 0.08
Matches are distributed among these distances:
26 6 0.08
27 50 0.69
28 16 0.22
ACGTcount: A:0.36, C:0.23, G:0.26, T:0.15
Consensus pattern (26 bp):
CCAGAACAGATAATGTGGCAGAGCCA
Found at i:101122769 original size:54 final size:54
Alignment explanation
Indices: 101122678--101122789 Score: 145
Period size: 54 Copynumber: 2.1 Consensus size: 54
101122668 AGCATGGCTG
* * *
101122678 CCAGAACAGATAATGTGACAGAGTCACCAGATACAGATAGTCGTGGCAGAGCCA
1 CCAGAACAGAAAATGTGACAGAGCCACCAGATACAGATAATCGTGGCAGAGCCA
* * * *
101122732 CCAGAACAGAAATATGTGGCAGAGCCACCGGAT-CAGATAATTGTGGCATAGCCA
1 CCAGAACAGAAA-ATGTGACAGAGCCACCAGATACAGATAATCGTGGCAGAGCCA
101122786 CCAG
1 CCAG
101122790 GACGCTTCCT
Statistics
Matches: 50, Mismatches: 7, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
54 33 0.66
55 17 0.34
ACGTcount: A:0.36, C:0.23, G:0.26, T:0.15
Consensus pattern (54 bp):
CCAGAACAGAAAATGTGACAGAGCCACCAGATACAGATAATCGTGGCAGAGCCA
Found at i:101124240 original size:24 final size:24
Alignment explanation
Indices: 101124212--101124258 Score: 67
Period size: 24 Copynumber: 2.0 Consensus size: 24
101124202 CTAGATTTCC
** *
101124212 TCCCTTATCTGCTTCTAAATCCTA
1 TCCCTTATCAACTCCTAAATCCTA
101124236 TCCCTTATCAACTCCTAAATCCT
1 TCCCTTATCAACTCCTAAATCCT
101124259 CTCCTGACAG
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.23, C:0.36, G:0.02, T:0.38
Consensus pattern (24 bp):
TCCCTTATCAACTCCTAAATCCTA
Found at i:101130563 original size:27 final size:26
Alignment explanation
Indices: 101130532--101130636 Score: 129
Period size: 27 Copynumber: 3.9 Consensus size: 26
101130522 CTGCCAGAAT
* *
101130532 AGATAATGTGACAGAGTCACCAGATAC
1 AGATAATGTGGCAGAGCCACCAGAT-C
*
101130559 AGATAATCGTGGCAGAGCCACCAGAGC
1 AGATAAT-GTGGCAGAGCCACCAGATC
*
101130586 AGAAATATGTGGCAGAGCCACCAGATC
1 AGATA-ATGTGGCAGAGCCACCAGATC
*
101130613 AGATAATTGTGGCATAGCCACCAG
1 AGATAA-TGTGGCAGAGCCACCAG
101130637 GACGCTTCCT
Statistics
Matches: 68, Mismatches: 7, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
26 1 0.01
27 50 0.74
28 17 0.25
ACGTcount: A:0.36, C:0.22, G:0.26, T:0.16
Consensus pattern (26 bp):
AGATAATGTGGCAGAGCCACCAGATC
Found at i:101132086 original size:24 final size:24
Alignment explanation
Indices: 101132059--101132129 Score: 124
Period size: 24 Copynumber: 3.0 Consensus size: 24
101132049 CTAGATTTCC
**
101132059 TCCCTTATCTGCTCCTAAATCCTA
1 TCCCTTATCAACTCCTAAATCCTA
101132083 TCCCTTATCAACTCCTAAATCCTA
1 TCCCTTATCAACTCCTAAATCCTA
101132107 TCCCTTATCAACTCCTAAATCCT
1 TCCCTTATCAACTCCTAAATCCT
101132130 TTCCTGACAG
Statistics
Matches: 45, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 45 1.00
ACGTcount: A:0.25, C:0.38, G:0.01, T:0.35
Consensus pattern (24 bp):
TCCCTTATCAACTCCTAAATCCTA
Found at i:101135506 original size:48 final size:48
Alignment explanation
Indices: 101135434--101135661 Score: 279
Period size: 48 Copynumber: 4.9 Consensus size: 48
101135424 GGTTATGTAC
*
101135434 GATCCCATGTAAGACCATGTCTGGGACATGGCTTTGGCATCGATATGT
1 GATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATATGT
* ** * *
101135482 AATTTCGTGTAAGACCATAG-CTGGG-C-T---ATCGGCATCGATATGT
1 GATCCCATGTAAGACCAT-GTCTGGGACATGGCATTGGCATCGATATGT
** **
101135525 GATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGACCTAC
1 GATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATATGT
* *
101135573 GATCCCATGTAAGACCATGTTTGGGACATGGTATTGGCATCGATATGT
1 GATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATATGT
* *
101135621 GATCCCATGTAAGACCATATCTGGGATATGGCATTGGCATC
1 GATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATC
101135662 CTACCATGTG
Statistics
Matches: 148, Mismatches: 25, Indels: 14
0.79 0.13 0.07
Matches are distributed among these distances:
42 1 0.01
43 33 0.22
44 1 0.01
45 1 0.01
46 1 0.01
47 1 0.01
48 109 0.74
49 1 0.01
ACGTcount: A:0.25, C:0.21, G:0.26, T:0.28
Consensus pattern (48 bp):
GATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATATGT
Found at i:101135589 original size:91 final size:92
Alignment explanation
Indices: 101135434--101135661 Score: 284
Period size: 91 Copynumber: 2.4 Consensus size: 92
101135424 GGTTATGTAC
* * ** *
101135434 GATCCCATGTAAGACCATGTCTGGGACATGGCTTTGGCATCGATATGTAATTTCGTGTAAGACCA
1 GATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATACG-AATCCCATGTAAGACCA
101135499 TAG-CTGGG-C-TATCGGCATCGATATGT
65 T-GTCTGGGACGTATCGGCATCGATATGT
101135525 GATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGACCTACG-ATCCCATGTAAGACC
1 GATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGA--TACGAATCCCATGTAAGACC
* *
101135589 ATGTTTGGGACATGGTATTGGCATCGATATGT
64 ATGTCTGGGAC---GTATCGGCATCGATATGT
* *
101135621 GATCCCATGTAAGACCATATCTGGGATATGGCATTGGCATC
1 GATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATC
101135662 CTACCATGTG
Statistics
Matches: 120, Mismatches: 9, Indels: 11
0.86 0.06 0.08
Matches are distributed among these distances:
90 1 0.01
91 60 0.50
92 1 0.01
93 3 0.03
96 55 0.46
ACGTcount: A:0.25, C:0.21, G:0.26, T:0.28
Consensus pattern (92 bp):
GATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATACGAATCCCATGTAAGACCAT
GTCTGGGACGTATCGGCATCGATATGT
Found at i:101138719 original size:23 final size:23
Alignment explanation
Indices: 101138689--101138740 Score: 104
Period size: 23 Copynumber: 2.3 Consensus size: 23
101138679 AGAGTCAGAG
101138689 GTAATTTAGTTACGAAACCTATC
1 GTAATTTAGTTACGAAACCTATC
101138712 GTAATTTAGTTACGAAACCTATC
1 GTAATTTAGTTACGAAACCTATC
101138735 GTAATT
1 GTAATT
101138741 CTATCCCATT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 29 1.00
ACGTcount: A:0.35, C:0.15, G:0.13, T:0.37
Consensus pattern (23 bp):
GTAATTTAGTTACGAAACCTATC
Found at i:101149356 original size:39 final size:39
Alignment explanation
Indices: 101149297--101149473 Score: 273
Period size: 39 Copynumber: 4.5 Consensus size: 39
101149287 ACAAAGCATG
*
101149297 CGGGACTTTAAGCCCGGATATAATACCAGCACGAATGCCTT
1 CGGGAC-TT-AGCCCGGATATAACACCAGCACGAATGCCTT
* *
101149338 CGGGACTTAGCCCAGATATAACGCCAGCACGAATGCCTT
1 CGGGACTTAGCCCGGATATAACACCAGCACGAATGCCTT
* *
101149377 CGGGACTTAGCCCAGATATAGCACCAGCACGAATGCCTT
1 CGGGACTTAGCCCGGATATAACACCAGCACGAATGCCTT
* *
101149416 CAGGACTTAGCCCGGATATAATACCAGCACGAATGCCTT
1 CGGGACTTAGCCCGGATATAACACCAGCACGAATGCCTT
101149455 CGGGACTTAGCCCGGATAT
1 CGGGACTTAGCCCGGATAT
101149474 TTTTTCAGCA
Statistics
Matches: 126, Mismatches: 10, Indels: 2
0.91 0.07 0.01
Matches are distributed among these distances:
39 118 0.94
40 2 0.02
41 6 0.05
ACGTcount: A:0.28, C:0.29, G:0.23, T:0.20
Consensus pattern (39 bp):
CGGGACTTAGCCCGGATATAACACCAGCACGAATGCCTT
Found at i:101149509 original size:39 final size:39
Alignment explanation
Indices: 101149487--101149597 Score: 195
Period size: 39 Copynumber: 2.8 Consensus size: 39
101149477 TTCAGCACTT
*
101149487 AGCCTGTGGACTTTAAGTCCGGATATATTTCCAGCATAA
1 AGCCTGTGGACTTCAAGTCCGGATATATTTCCAGCATAA
*
101149526 AGCCTGCGGACTTCAAGTCCGGATATATTTCCAGCATAA
1 AGCCTGTGGACTTCAAGTCCGGATATATTTCCAGCATAA
*
101149565 AGCCTGTGGACTTCAAGTCCGGATATTTTTCCA
1 AGCCTGTGGACTTCAAGTCCGGATATATTTCCA
101149598 ATACCATGCA
Statistics
Matches: 68, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
39 68 1.00
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (39 bp):
AGCCTGTGGACTTCAAGTCCGGATATATTTCCAGCATAA
Found at i:101149509 original size:78 final size:78
Alignment explanation
Indices: 101149352--101149590 Score: 220
Period size: 78 Copynumber: 3.1 Consensus size: 78
101149342 ACTTAGCCCA
** * *** *
101149352 GATATAACGCCAGCACGAATGCCTTCGGGACTTAGCCCAGATATAGCACCAGCACGAATGCCT-T
1 GATATAATACCAGCACGAATGCCTTCGGGACTTAGCCCGGATATATTTCCAGCACTAA-GCCTGT
*
101149416 CAGGAC-TT-AGCCCG
65 --GGACTTTAAGTCCG
* * *
101149430 GATATAATACCAGCACGAATGCCTTCGGGACTTAGCCCGGATATTTTTTCAGCACTTAGCCTGTG
1 GATATAATACCAGCACGAATGCCTTCGGGACTTAGCCCGGATATATTTCCAGCACTAAGCCTGTG
101149495 GACTTTAAGTCCG
66 GACTTTAAGTCCG
* * * * * *
101149508 GATATATTTCCAGCA-TAAAGCCTGC-GGACTTCAAGTCCGGATATATTTCCAGCA-TAAAGCCT
1 GATATAATACCAGCACGAATGCCTTCGGGACTT--AGCCCGGATATATTTCCAGCACT-AAGCCT
*
101149570 GTGGACTTCAAGTCCG
63 GTGGACTTTAAGTCCG
101149586 GATAT
1 GATAT
101149591 TTTTCCAATA
Statistics
Matches: 134, Mismatches: 21, Indels: 12
0.80 0.13 0.07
Matches are distributed among these distances:
76 10 0.07
77 14 0.10
78 110 0.82
ACGTcount: A:0.27, C:0.26, G:0.22, T:0.25
Consensus pattern (78 bp):
GATATAATACCAGCACGAATGCCTTCGGGACTTAGCCCGGATATATTTCCAGCACTAAGCCTGTG
GACTTTAAGTCCG
Found at i:101153996 original size:49 final size:47
Alignment explanation
Indices: 101153771--101154618 Score: 1238
Period size: 47 Copynumber: 17.6 Consensus size: 47
101153761 TATTTGAATA
*
101153771 AATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
101153818 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
101153865 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
101153912 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
101153959 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG
101154008 AATGTGAAAGTGTATATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG----TATATATGTGATAAGGCCTAATGGCCGATGTGATG
* * *
101154059 AATGTGAAAGTGTATATATATGTGATATATATATGTGATAAGGCCTAATGGCCAATGTGATG
1 AATGTGAAAGTG--TATATATGTG----ATA-A---G----GCCT-AATGGCCGATGTGATG
101154121 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
101154170 AATGTGAAAGTGTGTATATGTGATAAGG-CGAATGGCC-ATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
101154215 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATATGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
101154264 AATGTGAAAGTGTATATATGTGATAAGGTCGAATGGCC-ATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
101154310 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
101154359 AATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
101154406 AATGTGAAAGTGTATATATGTGATAAGGCCTAAT-GCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
101154452 AATGTGAAAGTGTATATATGTGATAAGG-CTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
101154498 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* * * * * *
101154545 AATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
101154592 GATGTGAAAGTGTATAAATGTGATAAG
1 AATGTGAAAGTGTATATATGTGATAAG
101154619 TCCGAAGGGC
Statistics
Matches: 743, Mismatches: 32, Indels: 52
0.90 0.04 0.06
Matches are distributed among these distances:
45 25 0.03
46 107 0.14
47 352 0.47
48 32 0.04
49 125 0.17
50 2 0.00
51 49 0.07
53 3 0.00
54 2 0.00
57 2 0.00
58 3 0.00
61 2 0.00
62 39 0.05
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.30
Consensus pattern (47 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
Found at i:101154089 original size:13 final size:13
Alignment explanation
Indices: 101154071--101154098 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
101154061 TGTGAAAGTG
101154071 TATATATATGTGA
1 TATATATATGTGA
101154084 TATATATATGTGA
1 TATATATATGTGA
101154097 TA
1 TA
101154099 AGGCCTAATG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.39, C:0.00, G:0.14, T:0.46
Consensus pattern (13 bp):
TATATATATGTGA
Found at i:101154092 original size:162 final size:158
Alignment explanation
Indices: 101153924--101154618 Score: 850
Period size: 142 Copynumber: 4.7 Consensus size: 158
101153914 TGTGAAAGTG
101153924 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGG
101153989 CCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATATGTGATAAGGCCTAATGGCCGATG
66 CCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATATGTGATAAGGCCTAATGGCCGATG
101154054 TGATGAATGTGAAAGTGTATATATATGTGATA
129 TGATGAATGTGAAAGTGTATATATA-GTG-TA
*
101154086 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGG
* *
101154151 CCTAATGGCCGATGTGATGAATGTGAAAGTG--TGTATATGTGATAAGG-CGAATGGCC-ATGTG
66 CCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTG
101154212 ATGAA--T----GTG---A-A-AGTGTA
131 ATGAATGTGAAAGTGTATATATAGTGTA
*
101154229 TATATATGTGATAAGGCCTAATGGCCGATATGATGAATGTGAAAGTG--TATATATGTGATAAGG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGG
* *
101154292 TCGAATGGCC-ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTG
66 CCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTG
101154356 ATGAA--T----GTG---A-A-AGTG--
131 ATGAATGTGAAAGTGTATATATAGTGTA
*
101154371 TATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGG
101154434 CCTAAT-GCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGG-CTAATGGCCGATGTG
66 CCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTG
101154495 ATGAA--T----GTG---A-A-AGTG--
131 ATGAATGTGAAAGTGTATATATAGTGTA
* *
101154510 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGACAGGG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGG
* * * * *
101154573 CCGAGTGGCCAACGTGATGGATGTGAAAGTGTATA-A-ATGTGATAAG
66 CCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAG
101154619 TCCGAAGGGC
Statistics
Matches: 504, Mismatches: 21, Indels: 38
0.90 0.04 0.07
Matches are distributed among these distances:
139 94 0.19
140 67 0.13
141 28 0.06
142 102 0.20
143 55 0.11
144 23 0.05
145 1 0.00
146 1 0.00
147 1 0.00
150 3 0.01
154 1 0.00
156 10 0.02
157 8 0.02
158 15 0.03
162 95 0.19
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.30
Consensus pattern (158 bp):
TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGG
CCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTG
ATGAATGTGAAAGTGTATATATAGTGTA
Found at i:101154096 original size:62 final size:62
Alignment explanation
Indices: 101154021--101154147 Score: 245
Period size: 62 Copynumber: 2.0 Consensus size: 62
101154011 GTGAAAGTGT
*
101154021 ATATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTG
1 ATATATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTG
101154083 ATATATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTG
1 ATATATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTG
101154145 ATA
1 ATA
101154148 AGGCCTAATG
Statistics
Matches: 64, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
62 64 1.00
ACGTcount: A:0.35, C:0.06, G:0.24, T:0.34
Consensus pattern (62 bp):
ATATATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTG
Found at i:101154096 original size:113 final size:111
Alignment explanation
Indices: 101153971--101154188 Score: 400
Period size: 111 Copynumber: 1.9 Consensus size: 111
101153961 TGTGAAAGTG
*
101153971 TATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATATGTGAT
1 TATATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTG--TATATATATGTGAT
101154036 AAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
64 AAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
101154084 TATATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAA
1 TATATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAA
*
101154149 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTGTATAT
66 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
101154189 GTGATAAGGC
Statistics
Matches: 103, Mismatches: 2, Indels: 2
0.96 0.02 0.02
Matches are distributed among these distances:
111 55 0.53
113 48 0.47
ACGTcount: A:0.33, C:0.07, G:0.27, T:0.33
Consensus pattern (111 bp):
TATATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAA
GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
Found at i:101154871 original size:35 final size:37
Alignment explanation
Indices: 101154736--101154870 Score: 231
Period size: 37 Copynumber: 3.7 Consensus size: 37
101154726 CCGAGCTCTA
101154736 AAGACCC-ATGACTACGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATGACTACGTGTGGAGATTATGTCCGGGT
101154772 AAGACCCGATGACTACGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATGACTACGTGTGGAGATTATGTCCGGGT
*
101154809 AAGACCCGATGACTACGTGTGGAGATTTTGTCCGGGT
1 AAGACCCGATGACTACGTGTGGAGATTATGTCCGGGT
*
101154846 AAGA-CCGAT-ACTTCGTGTGGAGATT
1 AAGACCCGATGACTACGTGTGGAGATT
101154871 TCGTCTGAGC
Statistics
Matches: 96, Mismatches: 2, Indels: 3
0.95 0.02 0.03
Matches are distributed among these distances:
35 15 0.16
36 12 0.12
37 69 0.72
ACGTcount: A:0.24, C:0.19, G:0.31, T:0.26
Consensus pattern (37 bp):
AAGACCCGATGACTACGTGTGGAGATTATGTCCGGGT
Found at i:101156193 original size:40 final size:40
Alignment explanation
Indices: 101156134--101156438 Score: 441
Period size: 40 Copynumber: 7.7 Consensus size: 40
101156124 GAGAATTGAG
*
101156134 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTTGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
*
101156174 AGTGATATATCCGGACTAAGTCCCGAGGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
*
101156214 AGTGATATATCCGGGCTAAGTCCTGAGGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
*
101156254 AGTGATATATCCGGGCTAAGT-CCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
101156293 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
* * *
101156333 AGTGATGTATCCGGGCTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
* * ** * * *
101156373 GGTGATATATCCGTGCTAAACCCCAAAGAGAATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
* * * *
101156413 GGTGTTATATCTGGGCTAGGTCCCGA
1 AGTGATATATCCGGGCTAAGTCCCGA
101156439 AGAGTAATCA
Statistics
Matches: 239, Mismatches: 25, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
39 37 0.15
40 202 0.85
ACGTcount: A:0.24, C:0.21, G:0.29, T:0.27
Consensus pattern (40 bp):
AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
Found at i:101156423 original size:159 final size:160
Alignment explanation
Indices: 101156134--101156442 Score: 458
Period size: 159 Copynumber: 1.9 Consensus size: 160
101156124 GAGAATTGAG
*
101156134 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTTGTGCTAGTGATATATCCGGACTAAGTCCCG
1 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCTAGTGATATATCCGGACTAAGTCCCG
* ** ** * *
101156199 AGGAGCATTCGTGCTAGTGATATATCCGGGCTAAGTCCTGAGGAGCATTCGTGCTAGTGATATAT
66 AAGAGCATTCGTGCTAGTGATATATCCGGGCTAAACCCCAAAGAGAATTCGTGCTAGTGATATAT
101156264 CCGGGCTAAGT-CCGAAGAGCATTCGTGCT
131 CCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* * *
101156293 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTTCCG
1 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCTAGTGATATATCCGGACTAAGTCCCG
* * * *
101156358 AAGAGCATTCGTGCTGGTGATATATCCGTGCTAAACCCCAAAGAGAATTCGTGCTGGTGTTATAT
66 AAGAGCATTCGTGCTAGTGATATATCCGGGCTAAACCCCAAAGAGAATTCGTGCTAGTGATATAT
* *
101156423 CTGGGCTAGGTCCCGAAGAG
131 CCGGGCTAAGTCCCGAAGAG
101156443 TAATCATGCT
Statistics
Matches: 132, Mismatches: 17, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
159 124 0.94
160 8 0.06
ACGTcount: A:0.24, C:0.21, G:0.29, T:0.26
Consensus pattern (160 bp):
AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCTAGTGATATATCCGGACTAAGTCCCG
AAGAGCATTCGTGCTAGTGATATATCCGGGCTAAACCCCAAAGAGAATTCGTGCTAGTGATATAT
CCGGGCTAAGTCCCGAAGAGCATTCGTGCT
Found at i:101160045 original size:47 final size:47
Alignment explanation
Indices: 101159991--101160542 Score: 825
Period size: 47 Copynumber: 11.6 Consensus size: 47
101159981 TATTTGAATA
* *
101159991 AATGTGAAACTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
101160038 AATGTGAAAGTGTATATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG----TATATATGTGATAAGGCCTAATGGCCGATGTGATG
* * * *
101160089 AATGTGAAAGTGTGTATATGTGATAAGGCCGAATGGCCAATGTCATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
101160136 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATATGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG
* * * *
101160185 AATGTGAAAGTGTATATATCTGATAAGGCCGAATGGCCAATGTGATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
101160232 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
101160281 AATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
101160328 AATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
101160375 AATATGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
101160422 AATGTGAAAGTGTATATATGTGATAAGGGCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* * * * * *
101160469 AATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
101160516 GATGTGAAAGTGTATAAATGTGATAAG
1 AATGTGAAAGTGTATATATGTGATAAG
101160543 TCCCGAAGGG
Statistics
Matches: 461, Mismatches: 36, Indels: 16
0.90 0.07 0.03
Matches are distributed among these distances:
47 329 0.71
49 85 0.18
51 47 0.10
ACGTcount: A:0.34, C:0.09, G:0.28, T:0.29
Consensus pattern (47 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
Found at i:101160799 original size:37 final size:37
Alignment explanation
Indices: 101160661--101160798 Score: 249
Period size: 37 Copynumber: 3.7 Consensus size: 37
101160651 CCGAGCTCTA
101160661 AAGACCCGATGACTACGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATGACTACGTGTGGAGATTATGTCCGGGT
101160698 AAGACCCGATGACTACGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATGACTACGTGTGGAGATTATGTCCGGGT
*
101160735 AAGACCCGATGACTACGTGTGGAGATTTTGTCCGGGT
1 AAGACCCGATGACTACGTGTGGAGATTATGTCCGGGT
* *
101160772 AAGACCCGATAACTTCGTGTGGAGATT
1 AAGACCCGATGACTACGTGTGGAGATT
101160799 TCGTCTGAGC
Statistics
Matches: 98, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 98 1.00
ACGTcount: A:0.25, C:0.19, G:0.31, T:0.25
Consensus pattern (37 bp):
AAGACCCGATGACTACGTGTGGAGATTATGTCCGGGT
Found at i:101167576 original size:27 final size:27
Alignment explanation
Indices: 101167546--101167604 Score: 73
Period size: 27 Copynumber: 2.2 Consensus size: 27
101167536 TGTAATGTGA
* *
101167546 AATTGAATGGCAAATTATTGTTACATG
1 AATTGAATGGCAAATTACTATTACATG
**
101167573 AATTGAATGTTAAATTACTATTACATG
1 AATTGAATGGCAAATTACTATTACATG
*
101167600 GATTG
1 AATTG
101167605 TATGAATTGC
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.37, C:0.07, G:0.17, T:0.39
Consensus pattern (27 bp):
AATTGAATGGCAAATTACTATTACATG
Found at i:101178589 original size:26 final size:26
Alignment explanation
Indices: 101178545--101178594 Score: 66
Period size: 26 Copynumber: 1.9 Consensus size: 26
101178535 TTTCTCTTAA
*
101178545 TTTTTAATTTTATTCAATTAATTAATT
1 TTTTTAATTTCATTCAATT-ATTAATT
*
101178572 TTTTTAA-TTCATTGAATTATTAA
1 TTTTTAATTTCATTCAATTATTAA
101178595 AAATTTTTAT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
25 5 0.24
26 9 0.43
27 7 0.33
ACGTcount: A:0.34, C:0.04, G:0.02, T:0.60
Consensus pattern (26 bp):
TTTTTAATTTCATTCAATTATTAATT
Found at i:101185534 original size:27 final size:27
Alignment explanation
Indices: 101185484--101185569 Score: 129
Period size: 27 Copynumber: 3.2 Consensus size: 27
101185474 GGTAAAATAG
*
101185484 TCATTTTACCCTAT-AGGGTATTTCGG
1 TCATTTTACCCTATGAGGGTATTTCGA
* *
101185510 TCATTCTACCTTATGAGGGTATTTCGA
1 TCATTTTACCCTATGAGGGTATTTCGA
*
101185537 TCATTTTACCCTATGAGGATATTTCGA
1 TCATTTTACCCTATGAGGGTATTTCGA
101185564 TCATTT
1 TCATTT
101185570 GATCACATAA
Statistics
Matches: 53, Mismatches: 6, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
26 12 0.23
27 41 0.77
ACGTcount: A:0.22, C:0.19, G:0.16, T:0.43
Consensus pattern (27 bp):
TCATTTTACCCTATGAGGGTATTTCGA
Found at i:101185771 original size:27 final size:27
Alignment explanation
Indices: 101185564--101185770 Score: 308
Period size: 27 Copynumber: 7.7 Consensus size: 27
101185554 GATATTTCGA
*
101185564 TCATTTGATCACATAAGGGCAAAATCG
1 TCATTTTATCACATAAGGGCAAAATCG
* *
101185591 TCATTTTATCATATAAGGG-AAAATCA
1 TCATTTTATCACATAAGGGCAAAATCG
* * * *
101185617 TCATTTTGTAACATAATGGCAAAATCA
1 TCATTTTATCACATAAGGGCAAAATCG
*
101185644 TCATTTTATCACATAAGGGCAAAATTG
1 TCATTTTATCACATAAGGGCAAAATCG
*
101185671 TCATTTTATCACATAAGGGCAAAATCC
1 TCATTTTATCACATAAGGGCAAAATCG
*
101185698 TCATTTTATCACATAAGGGAAAAATCG
1 TCATTTTATCACATAAGGGCAAAATCG
*
101185725 TCATTTTATCACATAAGGGTAAAATCG
1 TCATTTTATCACATAAGGGCAAAATCG
101185752 TCATTTTATCACATAAGGG
1 TCATTTTATCACATAAGGG
101185771 TTCAGGTACG
Statistics
Matches: 162, Mismatches: 17, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
26 21 0.13
27 141 0.87
ACGTcount: A:0.38, C:0.16, G:0.14, T:0.32
Consensus pattern (27 bp):
TCATTTTATCACATAAGGGCAAAATCG
Found at i:101198733 original size:27 final size:27
Alignment explanation
Indices: 101198657--101198736 Score: 106
Period size: 27 Copynumber: 3.0 Consensus size: 27
101198647 GTAAGGAGTG
**
101198657 TTTGCTAGTTAATTTGGCAAACTGGGA
1 TTTGCTAGTTAATTTGGCAAGTTGGGA
* *
101198684 TTTGCTAGTTAATTTGGCGAGTTGGGT
1 TTTGCTAGTTAATTTGGCAAGTTGGGA
* *
101198711 TTTGCCAGTTAATTTTGCAAGTTGGG
1 TTTGCTAGTTAATTTGGCAAGTTGGG
101198737 GTTCTCCAGT
Statistics
Matches: 46, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 46 1.00
ACGTcount: A:0.20, C:0.10, G:0.29, T:0.41
Consensus pattern (27 bp):
TTTGCTAGTTAATTTGGCAAGTTGGGA
Found at i:101198757 original size:54 final size:55
Alignment explanation
Indices: 101198657--101198848 Score: 183
Period size: 54 Copynumber: 3.5 Consensus size: 55
101198647 GTAAGGAGTG
* * * ** * ** * *
101198657 TTTGCTAGTTAATTTGGCAAACTGGGATTTGCTAGTTAATTTGGCGAG-TTGGGT
1 TTTGCCAGTTAATTTGGCAAGCTGGGGTTCACCAGTTGGTTGGGCGAGCTAGGGT
* * * *
101198711 TTTGCCAGTTAATTTTGCAAGTTGGGGTTCTCCAGTTGGTTGGGCGAGCTAAGG-
1 TTTGCCAGTTAATTTGGCAAGCTGGGGTTCACCAGTTGGTTGGGCGAGCTAGGGT
* * *
101198765 TTCGCTAGTTAATTTGGCAAGCTGGGGTTCACCAGTTGGTTTGGCGAGCTAGGGT
1 TTTGCCAGTTAATTTGGCAAGCTGGGGTTCACCAGTTGGTTGGGCGAGCTAGGGT
* * *
101198820 TCT-CCAGTGAATTTGGTAAGCTGGGGTTC
1 TTTGCCAGTTAATTTGGCAAGCTGGGGTTC
101198849 GCTTATTGGT
Statistics
Matches: 111, Mismatches: 25, Indels: 4
0.79 0.18 0.03
Matches are distributed among these distances:
54 107 0.96
55 4 0.04
ACGTcount: A:0.18, C:0.14, G:0.32, T:0.36
Consensus pattern (55 bp):
TTTGCCAGTTAATTTGGCAAGCTGGGGTTCACCAGTTGGTTGGGCGAGCTAGGGT
Found at i:101198846 original size:27 final size:28
Alignment explanation
Indices: 101198663--101198848 Score: 98
Period size: 27 Copynumber: 6.9 Consensus size: 28
101198653 AGTGTTTGCT
* * ** *
101198663 AGTT-AATTTGGCAAACTGGGATTTGCT
1 AGTTGAATTTGGCAAGCTGGGGTTCACC
* * * **
101198690 AGTT-AATTTGGCGAGTTGGGTTTTGCC
1 AGTTGAATTTGGCAAGCTGGGGTTCACC
* * *
101198717 AGTT-AATTTTGCAAGTTGGGGTTCTCC
1 AGTTGAATTTGGCAAGCTGGGGTTCACC
* * * ** * *
101198744 AGTTG-GTTGGGCGAGCTAAGGTTCGCT
1 AGTTGAATTTGGCAAGCTGGGGTTCACC
101198771 AGTT-AATTTGGCAAGCTGGGGTTCACC
1 AGTTGAATTTGGCAAGCTGGGGTTCACC
* * * *
101198798 AGTTG-GTTTGGCGAGCTAGGGTTCTCC
1 AGTTGAATTTGGCAAGCTGGGGTTCACC
*
101198825 AG-TGAATTTGGTAAGCTGGGGTTC
1 AGTTGAATTTGGCAAGCTGGGGTTC
101198849 GCTTATTGGT
Statistics
Matches: 121, Mismatches: 34, Indels: 8
0.74 0.21 0.05
Matches are distributed among these distances:
26 2 0.02
27 119 0.98
ACGTcount: A:0.18, C:0.14, G:0.33, T:0.35
Consensus pattern (28 bp):
AGTTGAATTTGGCAAGCTGGGGTTCACC
Found at i:101202772 original size:34 final size:34
Alignment explanation
Indices: 101202733--101202800 Score: 136
Period size: 34 Copynumber: 2.0 Consensus size: 34
101202723 AGTGAAGATG
101202733 GATGTAAATAAAAACCTAGATCATGGCAGATCAA
1 GATGTAAATAAAAACCTAGATCATGGCAGATCAA
101202767 GATGTAAATAAAAACCTAGATCATGGCAGATCAA
1 GATGTAAATAAAAACCTAGATCATGGCAGATCAA
101202801 ACTTGAACTC
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 34 1.00
ACGTcount: A:0.47, C:0.15, G:0.18, T:0.21
Consensus pattern (34 bp):
GATGTAAATAAAAACCTAGATCATGGCAGATCAA
Found at i:101203796 original size:49 final size:50
Alignment explanation
Indices: 101203662--101203811 Score: 203
Period size: 49 Copynumber: 3.0 Consensus size: 50
101203652 CTACTCGGAT
* *
101203662 ACTTGGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGAAA
1 ACTTGGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATA
* * * * * *
101203712 ACTGTGATCACGTGTGTAGTACTAAGTGCAAGCTACTATGTGTACCAGATT
1 ACT-TGGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATA
*
101203763 A-TTGGTCGCATGTGTAGTACTAAGTGTAGGCTACTATGCGTACCAGATA
1 ACTTGGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATA
101203812 GCTTCGGCTA
Statistics
Matches: 84, Mismatches: 15, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
49 40 0.48
50 4 0.05
51 40 0.48
ACGTcount: A:0.27, C:0.19, G:0.25, T:0.29
Consensus pattern (50 bp):
ACTTGGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATA
Found at i:101206809 original size:15 final size:15
Alignment explanation
Indices: 101206789--101206842 Score: 51
Period size: 15 Copynumber: 3.7 Consensus size: 15
101206779 TATCGTATCT
101206789 TGGGTTTCTTTATTC
1 TGGGTTTCTTTATTC
101206804 TGGGTTT-TTCTA-TC
1 TGGGTTTCTT-TATTC
*
101206818 TTGGATTTCTTTATTC
1 -TGGGTTTCTTTATTC
*
101206834 -GGTTTTCTT
1 TGGGTTTCTT
101206843 GTTATCTTTA
Statistics
Matches: 33, Mismatches: 2, Indels: 9
0.75 0.05 0.20
Matches are distributed among these distances:
14 12 0.36
15 17 0.52
16 4 0.12
ACGTcount: A:0.07, C:0.13, G:0.19, T:0.61
Consensus pattern (15 bp):
TGGGTTTCTTTATTC
Found at i:101209373 original size:49 final size:49
Alignment explanation
Indices: 101209301--101209488 Score: 234
Period size: 49 Copynumber: 3.8 Consensus size: 49
101209291 TGAGGTCACG
* *
101209301 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAATTGGTCGCA
** * * * *
101209350 TGTGTAGTACTAAGTGCAGGCTACTATGCATACCCA-AAAACTATGATCACG
1 TGTGTAGTACTAAGTGCAGGCTACTATGTGTA-CCAGATAA-T-TGGTCGCA
* * *
101209401 TGTGTAGTACTAAGTGCAGGCTACTATGTGTAACAGATTAGTGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAATTGGTCGCA
*
101209450 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATA
1 TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATA
101209489 GCTTCGGCTA
Statistics
Matches: 115, Mismatches: 20, Indels: 8
0.80 0.14 0.06
Matches are distributed among these distances:
49 73 0.63
50 5 0.04
51 37 0.32
ACGTcount: A:0.28, C:0.18, G:0.26, T:0.28
Consensus pattern (49 bp):
TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAATTGGTCGCA
Found at i:101209469 original size:100 final size:100
Alignment explanation
Indices: 101209296--101209483 Score: 322
Period size: 100 Copynumber: 1.9 Consensus size: 100
101209286 TATTGTGAGG
* * *
101209296 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCGCATGTGTAGTACT
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTAACAGATAAGTGGTCGCATGTGTAGTACT
101209361 AAGTGCAGGCTACTATGCATACCCAAAAACTATGA
66 AAGTGCAGGCTACTATGCATACCCAAAAACTATGA
* *
101209396 TCACGTGTGTAGTACTAAGTGCAGGCTACTATGTGTAACAGATTAGTGGTCGCATGTGTAGTACT
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTAACAGATAAGTGGTCGCATGTGTAGTACT
*
101209461 AAGTGCAGGCTACTATGCGTACC
66 AAGTGCAGGCTACTATGCATACC
101209484 AGATAGCTTC
Statistics
Matches: 82, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
100 82 1.00
ACGTcount: A:0.27, C:0.19, G:0.26, T:0.28
Consensus pattern (100 bp):
TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTAACAGATAAGTGGTCGCATGTGTAGTACT
AAGTGCAGGCTACTATGCATACCCAAAAACTATGA
Found at i:101212517 original size:8 final size:8
Alignment explanation
Indices: 101212492--101212526 Score: 54
Period size: 8 Copynumber: 4.4 Consensus size: 8
101212482 TAAAAAGTAG
101212492 AAATAA-A
1 AAATAATA
101212499 AAATGAATA
1 AAAT-AATA
101212508 AAATAATA
1 AAATAATA
101212516 AAATAATA
1 AAATAATA
101212524 AAA
1 AAA
101212527 ATTCTTTAAA
Statistics
Matches: 26, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
7 4 0.15
8 17 0.65
9 5 0.19
ACGTcount: A:0.77, C:0.00, G:0.03, T:0.20
Consensus pattern (8 bp):
AAATAATA
Found at i:101218747 original size:41 final size:41
Alignment explanation
Indices: 101218684--101218765 Score: 128
Period size: 41 Copynumber: 2.0 Consensus size: 41
101218674 TCTGAAAGTA
* * *
101218684 AGAAAAATTCTCTTTTGGTCAAATGATAATTAGACTGGCCT
1 AGAAAAATTCTCTTGTGATCAAATGATAATTAGACTAGCCT
*
101218725 AGAAAAATTCTCTTGTGATCAAATGATAATTGGACTAGCCT
1 AGAAAAATTCTCTTGTGATCAAATGATAATTAGACTAGCCT
101218766 TTGTGGTAGG
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
41 37 1.00
ACGTcount: A:0.35, C:0.15, G:0.17, T:0.33
Consensus pattern (41 bp):
AGAAAAATTCTCTTGTGATCAAATGATAATTAGACTAGCCT
Found at i:101226865 original size:46 final size:45
Alignment explanation
Indices: 101226813--101226987 Score: 167
Period size: 46 Copynumber: 3.8 Consensus size: 45
101226803 TGGTTGAGCA
101226813 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTACGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA-GGATGCGAATG
* * * * *
101226859 TTCGAACTCGTTGAGTTGAGTCCTAGTTC-GTGA-GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTAGGATGCGAA-T--G
* *
101226904 CATCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA-GGATGCGAATG
* * * *
101226952 GCTGAGCTCGTTGATTTGAGTCCGAGTTCACTTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTAGG
101226988 GGCGGGTTAC
Statistics
Matches: 103, Mismatches: 17, Indels: 19
0.74 0.12 0.14
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 5 0.05
46 56 0.54
47 26 0.25
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.21, C:0.19, G:0.29, T:0.31
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTAGGATGCGAATG
Found at i:101226971 original size:93 final size:93
Alignment explanation
Indices: 101226810--101226980 Score: 263
Period size: 93 Copynumber: 1.8 Consensus size: 93
101226800 GGATGGTTGA
* *
101226810 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTACGGATGCGAATGTTCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTACGGATGCGAAGGCTCGAACTCGTTGAGT
*
101226875 TGAGTCCTAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* * * *
101226903 GCATCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACGGCT-GAGCTCGTTGAT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTACGGATGCGAA-GGCTCGAACTCGTTGAG
101226967 TTGAGTCCGAGTTC
65 TTGAGTCCGAGTTC
101226981 ACTTAGGGGC
Statistics
Matches: 70, Mismatches: 7, Indels: 2
0.89 0.09 0.03
Matches are distributed among these distances:
93 68 0.97
94 2 0.03
ACGTcount: A:0.21, C:0.20, G:0.29, T:0.30
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTACGGATGCGAAGGCTCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:101233488 original size:53 final size:53
Alignment explanation
Indices: 101233373--101233513 Score: 147
Period size: 53 Copynumber: 2.6 Consensus size: 53
101233363 GGAAATCATT
* * ** * * * *
101233373 TAAGACCATGTCAAGACATGGCATTTATAAACTACTATAAGGTAAAGATCCCATA
1 TAAGACCATGCCAAGACATGGCAATGGT-AAGTTC-ATAAGGTAAAGATACCACA
* * * *
101233428 TAAGACCATGCCAAGGCATGGCAATGGTGAGTTCATAAGGTAAGGATACCACG
1 TAAGACCATGCCAAGACATGGCAATGGTAAGTTCATAAGGTAAAGATACCACA
*
101233481 TAAGACCATGTCAAGACATGGCAATGGTAAGTT
1 TAAGACCATGCCAAGACATGGCAATGGTAAGTT
101233514 TAAAAAGGAA
Statistics
Matches: 71, Mismatches: 15, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
53 45 0.63
54 3 0.04
55 23 0.32
ACGTcount: A:0.38, C:0.18, G:0.22, T:0.23
Consensus pattern (53 bp):
TAAGACCATGCCAAGACATGGCAATGGTAAGTTCATAAGGTAAAGATACCACA
Found at i:101235398 original size:21 final size:21
Alignment explanation
Indices: 101235367--101235426 Score: 111
Period size: 21 Copynumber: 2.8 Consensus size: 21
101235357 GCGTGTGTTT
101235367 TGGGACACACGGGCGTGTCTGG
1 TGGG-CACACGGGCGTGTCTGG
101235389 TGGGCACACGGGCGTGTCTGG
1 TGGGCACACGGGCGTGTCTGG
101235410 TGGGCACACGGGCGTGT
1 TGGGCACACGGGCGTGT
101235427 GAGTTCCTCA
Statistics
Matches: 38, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
21 34 0.89
22 4 0.11
ACGTcount: A:0.12, C:0.23, G:0.47, T:0.18
Consensus pattern (21 bp):
TGGGCACACGGGCGTGTCTGG
Found at i:101236510 original size:37 final size:37
Alignment explanation
Indices: 101236469--101236541 Score: 146
Period size: 37 Copynumber: 2.0 Consensus size: 37
101236459 GGTTTTATAT
101236469 GGAGTGATTGGTTGGATGAGCTTAATAGCTCTATTGA
1 GGAGTGATTGGTTGGATGAGCTTAATAGCTCTATTGA
101236506 GGAGTGATTGGTTGGATGAGCTTAATAGCTCTATTG
1 GGAGTGATTGGTTGGATGAGCTTAATAGCTCTATTG
101236542 TTTTGTGAGT
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 36 1.00
ACGTcount: A:0.23, C:0.08, G:0.33, T:0.36
Consensus pattern (37 bp):
GGAGTGATTGGTTGGATGAGCTTAATAGCTCTATTGA
Found at i:101243477 original size:84 final size:85
Alignment explanation
Indices: 101243333--101243510 Score: 340
Period size: 84 Copynumber: 2.1 Consensus size: 85
101243323 GGCCGGCCAT
101243333 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
1 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
101243398 GTAAGGATTAATAAAATAAA
66 GTAAGGATTAATAAAATAAA
101243418 GAGCATGGGTGGACAAGATGTTATGGCT-AAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
1 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
101243482 GTAAGGATTAATAAAATAAA
66 GTAAGGATTAATAAAATAAA
*
101243502 GGGCATGGG
1 GAGCATGGG
101243511 CAATAAAATA
Statistics
Matches: 92, Mismatches: 1, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
84 64 0.70
85 28 0.30
ACGTcount: A:0.37, C:0.08, G:0.28, T:0.26
Consensus pattern (85 bp):
GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
GTAAGGATTAATAAAATAAA
Found at i:101244829 original size:47 final size:47
Alignment explanation
Indices: 101244775--101245320 Score: 778
Period size: 47 Copynumber: 11.6 Consensus size: 47
101244765 TATTTGAATA
*
101244775 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
101244822 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
101244871 AATGTGAACA-TGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAA-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
101244918 AATGTGAACA-TGCATATATGAGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAA-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
101244965 AATGTGAACA-TGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAA-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* * *
101245012 AATGTGAACA-TGTGTATGTGTGATAAGGCCGAATGGCCAATTTGATG
1 AATGTGAA-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
101245059 AATGTGAACA-TGCATATATGAGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAA-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
101245106 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
101245153 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
101245200 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* * * *
101245247 AATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
101245294 GATGTGAAAGTGTATACATGTGATAAG
1 AATGTGAAAGTGTATATATGTGATAAG
101245321 TCCCAAAGGG
Statistics
Matches: 462, Mismatches: 33, Indels: 8
0.92 0.07 0.02
Matches are distributed among these distances:
46 1 0.00
47 416 0.90
49 44 0.10
50 1 0.00
ACGTcount: A:0.33, C:0.10, G:0.30, T:0.28
Consensus pattern (47 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
Found at i:101256745 original size:30 final size:30
Alignment explanation
Indices: 101256711--101256794 Score: 141
Period size: 30 Copynumber: 2.8 Consensus size: 30
101256701 ATTTCCAAAC
101256711 CTAGGGGTAAAATGGTCATTTTGCAAAAGT
1 CTAGGGGTAAAATGGTCATTTTGCAAAAGT
*
101256741 CTAGGGGTAAAATGGTCATTTTGTAAAAGT
1 CTAGGGGTAAAATGGTCATTTTGCAAAAGT
* *
101256771 TTAGGGGCAAAATGGTCATTTTGC
1 CTAGGGGTAAAATGGTCATTTTGC
101256795 CCAATTTTAA
Statistics
Matches: 50, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 50 1.00
ACGTcount: A:0.31, C:0.10, G:0.27, T:0.32
Consensus pattern (30 bp):
CTAGGGGTAAAATGGTCATTTTGCAAAAGT
Found at i:101257280 original size:46 final size:46
Alignment explanation
Indices: 101257131--101257347 Score: 189
Period size: 46 Copynumber: 4.7 Consensus size: 46
101257121 TTTGTGTGCT
*
101257131 AGTGTAAGACATGTCTGGGACATGCATCGGC-C-ATAT-TACGAGAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCTCGAGATGT---AGAGCC
* * *
101257177 AGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGAGACG-AGAGCT
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGC-TCGAGATGTAGAGCC
* * *
101257225 ACTGTAAGACATGTCTGGGACATGCATCAGACTCGAAATGTA-AGCC
1 AGTGTAAGACATGTCTGGGACATGCATC-GGCTCGAGATGTAGAGCC
* * *
101257271 AGTGTAAGACATGTCTGGAACATGCATCAGCTACGAGATGT---GTC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCT-CGAGATGTAGAGCC
*
101257315 ATTGTAAGACCATGTCTGGGACATGGCATCGGC
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGC
101257348 ATCATGCCCT
Statistics
Matches: 141, Mismatches: 19, Indels: 22
0.77 0.10 0.12
Matches are distributed among these distances:
44 10 0.07
45 15 0.11
46 62 0.44
47 31 0.22
48 21 0.15
51 2 0.01
ACGTcount: A:0.29, C:0.20, G:0.29, T:0.23
Consensus pattern (46 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCTCGAGATGTAGAGCC
Found at i:101269199 original size:21 final size:20
Alignment explanation
Indices: 101269173--101269212 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 20
101269163 GTCATAATGC
101269173 CCACACAGACGTGTTGCCCTT
1 CCACACAGACGTG-TGCCCTT
* *
101269194 CCACACGGGCGTGTGCCCT
1 CCACACAGACGTGTGCCCT
101269213 GCTTCAAGTG
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 6 0.35
21 11 0.65
ACGTcount: A:0.15, C:0.40, G:0.25, T:0.20
Consensus pattern (20 bp):
CCACACAGACGTGTGCCCTT
Found at i:101271059 original size:18 final size:21
Alignment explanation
Indices: 101271024--101271061 Score: 55
Period size: 18 Copynumber: 2.0 Consensus size: 21
101271014 TGTTTCGTTT
101271024 TCTTTGTTTTCTTCCTTTCTA
1 TCTTTGTTTTCTTCCTTTCTA
101271045 TCTTT-TTTT-TT-CTTTCT
1 TCTTTGTTTTCTTCCTTTCT
101271062 TTTAAATATA
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
18 6 0.35
19 2 0.12
20 4 0.24
21 5 0.29
ACGTcount: A:0.03, C:0.21, G:0.03, T:0.74
Consensus pattern (21 bp):
TCTTTGTTTTCTTCCTTTCTA
Found at i:101271249 original size:21 final size:20
Alignment explanation
Indices: 101271210--101271259 Score: 75
Period size: 21 Copynumber: 2.5 Consensus size: 20
101271200 ATAATATAAT
101271210 TATTTAAT-TAATAAATATC
1 TATTTAATATAATAAATATC
*
101271229 TTTTATAATATAATAAATATC
1 TATT-TAATATAATAAATATC
101271250 TATTTAATAT
1 TATTTAATAT
101271260 CTAATACATG
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
19 3 0.11
20 10 0.37
21 14 0.52
ACGTcount: A:0.46, C:0.04, G:0.00, T:0.50
Consensus pattern (20 bp):
TATTTAATATAATAAATATC
Found at i:101273937 original size:24 final size:24
Alignment explanation
Indices: 101273898--101273959 Score: 90
Period size: 24 Copynumber: 2.6 Consensus size: 24
101273888 CATTGACTCC
*
101273898 TCTTATTTTT-TATTATTATTTAT
1 TCTTATTTTTATTTTATTATTTAT
101273921 TCTTATTTTTATTTTATTATTTAT
1 TCTTATTTTTATTTTATTATTTAT
* *
101273945 TTTTCTTTTTATTTT
1 TCTTATTTTTATTTT
101273960 TATTTTCATT
Statistics
Matches: 35, Mismatches: 3, Indels: 1
0.90 0.08 0.03
Matches are distributed among these distances:
23 10 0.29
24 25 0.71
ACGTcount: A:0.18, C:0.05, G:0.00, T:0.77
Consensus pattern (24 bp):
TCTTATTTTTATTTTATTATTTAT
Found at i:101273957 original size:30 final size:29
Alignment explanation
Indices: 101273900--101273965 Score: 89
Period size: 30 Copynumber: 2.2 Consensus size: 29
101273890 TTGACTCCTC
101273900 TTATTTTTTATTATTATTTATTCTTATTT
1 TTATTTTTTATTATTATTTATTCTTATTT
* *
101273929 TTATTTTATTATTTATT-TTTCTTTTTATTT
1 TTATTTT-TTA-TTATTATTTATTCTTATTT
101273959 TTATTTT
1 TTATTTT
101273966 CATTTCAATT
Statistics
Matches: 33, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
29 7 0.21
30 21 0.64
31 5 0.15
ACGTcount: A:0.18, C:0.03, G:0.00, T:0.79
Consensus pattern (29 bp):
TTATTTTTTATTATTATTTATTCTTATTT
Found at i:101273970 original size:12 final size:11
Alignment explanation
Indices: 101273900--101273990 Score: 67
Period size: 12 Copynumber: 7.6 Consensus size: 11
101273890 TTGACTCCTC
*
101273900 TTATTTTT-TA
1 TTATTTTTATT
101273910 TTATTATTTATT
1 TTATT-TTTATT
101273922 CTTATTTTTATT
1 -TTATTTTTATT
101273934 TTATTATTTATTT
1 TTATT-TTTA-TT
*
101273947 TTCTTTTTATTT
1 TTATTTTTA-TT
*
101273959 TTATTTTCATT
1 TTATTTTTATT
*
101273970 TCAATTTTATTATT
1 T-TA-TTT-TTATT
101273984 TTATTTT
1 TTATTTT
101273991 GAAAGACATA
Statistics
Matches: 66, Mismatches: 7, Indels: 15
0.75 0.08 0.17
Matches are distributed among these distances:
10 5 0.08
11 12 0.18
12 29 0.44
13 15 0.23
14 5 0.08
ACGTcount: A:0.20, C:0.04, G:0.00, T:0.76
Consensus pattern (11 bp):
TTATTTTTATT
Found at i:101286718 original size:13 final size:13
Alignment explanation
Indices: 101286700--101286726 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
101286690 GAAGTAATCG
101286700 CACACGGGCGTGT
1 CACACGGGCGTGT
101286713 CACACGGGCGTGT
1 CACACGGGCGTGT
101286726 C
1 C
101286727 CCTACCGAGC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.15, C:0.33, G:0.37, T:0.15
Consensus pattern (13 bp):
CACACGGGCGTGT
Found at i:101291149 original size:13 final size:13
Alignment explanation
Indices: 101291127--101291159 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
101291117 AAGGGTTTGT
101291127 TTAT-TAAACTAA
1 TTATCTAAACTAA
101291139 TTATCTAAACTAA
1 TTATCTAAACTAA
*
101291152 TTAACTAA
1 TTATCTAA
101291160 TTTAATTGAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 4 0.21
13 15 0.79
ACGTcount: A:0.48, C:0.12, G:0.00, T:0.39
Consensus pattern (13 bp):
TTATCTAAACTAA
Found at i:101292770 original size:20 final size:20
Alignment explanation
Indices: 101292727--101292772 Score: 56
Period size: 20 Copynumber: 2.3 Consensus size: 20
101292717 AAAGTAATCT
* * *
101292727 TCATTTTTCTCATTTTACTT
1 TCATTTTGCTCATTATACTA
*
101292747 TCATTTTGCTCATTATGCTA
1 TCATTTTGCTCATTATACTA
101292767 TCATTT
1 TCATTT
101292773 AATTTGCATT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.17, C:0.20, G:0.04, T:0.59
Consensus pattern (20 bp):
TCATTTTGCTCATTATACTA
Found at i:101292873 original size:23 final size:23
Alignment explanation
Indices: 101292847--101292893 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 23
101292837 CATTCTATTG
*
101292847 TCATACCCATGCCATTACTATGC
1 TCATACCCATGCCATTACCATGC
* * *
101292870 TCATTCTCATGCTATTACCATGC
1 TCATACCCATGCCATTACCATGC
101292893 T
1 T
101292894 AATGTCACGA
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.23, C:0.32, G:0.09, T:0.36
Consensus pattern (23 bp):
TCATACCCATGCCATTACCATGC
Found at i:101296711 original size:70 final size:71
Alignment explanation
Indices: 101296624--101296768 Score: 274
Period size: 70 Copynumber: 2.1 Consensus size: 71
101296614 AGTAATAGTC
*
101296624 ACTAAGGGGAAAGAATAGGGATCAATACAATGTCCCAAACTA-TTTTGTGTTTGTAACCCTTTTG
1 ACTAAGGGGAAAGAATAGAGATCAATACAATGTCCCAAACTATTTTTGTGTTTGTAACCCTTTTG
101296688 ATACTT
66 ATACTT
101296694 ACTAAGGGGAAAGAATAGAGATCAATACAATGTCCCAAACTATTTTTGTGTTTGTAACCCTTTTG
1 ACTAAGGGGAAAGAATAGAGATCAATACAATGTCCCAAACTATTTTTGTGTTTGTAACCCTTTTG
101296759 ATACTT
66 ATACTT
101296765 ACTA
1 ACTA
101296769 TTTTTGAATT
Statistics
Matches: 73, Mismatches: 1, Indels: 1
0.97 0.01 0.01
Matches are distributed among these distances:
70 41 0.56
71 32 0.44
ACGTcount: A:0.34, C:0.16, G:0.17, T:0.33
Consensus pattern (71 bp):
ACTAAGGGGAAAGAATAGAGATCAATACAATGTCCCAAACTATTTTTGTGTTTGTAACCCTTTTG
ATACTT
Found at i:101298328 original size:21 final size:21
Alignment explanation
Indices: 101298302--101298345 Score: 79
Period size: 21 Copynumber: 2.1 Consensus size: 21
101298292 CGATTTATTC
*
101298302 TTCCTTTTTAATCTCTTGAAT
1 TTCCTTTATAATCTCTTGAAT
101298323 TTCCTTTATAATCTCTTGAAT
1 TTCCTTTATAATCTCTTGAAT
101298344 TT
1 TT
101298346 TATCTTTTTA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.20, C:0.18, G:0.05, T:0.57
Consensus pattern (21 bp):
TTCCTTTATAATCTCTTGAAT
Found at i:101305368 original size:25 final size:26
Alignment explanation
Indices: 101305340--101305399 Score: 63
Period size: 25 Copynumber: 2.4 Consensus size: 26
101305330 TAATTAATAT
*
101305340 AAAATATTAATAATTTAAT-AAATTG
1 AAAATATTAATAATTAAATAAAATTG
* *
101305365 AAAA-ATTAAATGATTAAATAAAATTT
1 AAAATATT-AATAATTAAATAAAATTG
101305391 AAAAT-TTAA
1 AAAATATTAA
101305400 GAGAAAAATT
Statistics
Matches: 29, Mismatches: 3, Indels: 6
0.76 0.08 0.16
Matches are distributed among these distances:
24 3 0.10
25 15 0.52
26 11 0.38
ACGTcount: A:0.60, C:0.00, G:0.03, T:0.37
Consensus pattern (26 bp):
AAAATATTAATAATTAAATAAAATTG
Found at i:101318186 original size:54 final size:53
Alignment explanation
Indices: 101318122--101318227 Score: 133
Period size: 54 Copynumber: 2.0 Consensus size: 53
101318112 GTGACGAGCG
* * * *
101318122 TGTGTGAGGCCTTGTGTGACACACTA-CCTAGGCCATTTTGGGTCATGTGGGCCA
1 TGTGTCAGGCCGTGTGGGACACA-TAGCCAAGGCCATTTTGGG-CATGTGGGCCA
* *
101318176 TGTGTCAGGCCGTGTGGGCCACATAGGCAAGGCCATTTTGGGCATGTGGGCC
1 TGTGTCAGGCCGTGTGGGACACATAGCCAAGGCCATTTTGGGCATGTGGGCC
101318228 CACACGGGCA
Statistics
Matches: 45, Mismatches: 6, Indels: 3
0.83 0.11 0.06
Matches are distributed among these distances:
53 12 0.27
54 33 0.73
ACGTcount: A:0.16, C:0.23, G:0.35, T:0.26
Consensus pattern (53 bp):
TGTGTCAGGCCGTGTGGGACACATAGCCAAGGCCATTTTGGGCATGTGGGCCA
Found at i:101326349 original size:46 final size:47
Alignment explanation
Indices: 101326213--101326476 Score: 188
Period size: 46 Copynumber: 5.6 Consensus size: 47
101326203 AGTAAGATGT
* * * * *
101326213 CGATGCCATGTCTCAGACACGATCTTACACTGGCTCAT-ATCTC--AAGT
1 CGATG-CATGTCCCAGACATG-TCTTACACTGGCTC-TCGTCTCGTAGGC
* * *
101326260 CGATGCCATGTCCGAGACATGGTCTTACACTGACTAC-CATCTCGTA-GC
1 CGATG-CATGTCCCAGACAT-GTCTTACACTGGCT-CTCGTCTCGTAGGC
*
101326308 CGATGCATGTCCTAGACATGTCTTACACTGGCT-TACGTCTCG-AGGC
1 CGATGCATGTCCCAGACATGTCTTACACTGGCTCT-CGTCTCGTAGGC
* * * * * *
101326354 CGATGCATGTCCCAAACATGTCATACACTAGCTCTCGTCTC-AATGT
1 CGATGCATGTCCCAGACATGTCTTACACTGGCTCTCGTCTCGTAGGC
* * * * *
101326400 CGATACCATGTCTCTGACATAGTCTTACACTGGCTCTCTTAAT-GT-GGC
1 CGAT-GCATGTCCCAGACAT-GTCTTACACTGGCTCTCGT-CTCGTAGGC
101326448 CGATGCATGTCCCAGACATGTCTTACACT
1 CGATGCATGTCCCAGACATGTCTTACACT
101326477 AGCCAACAAT
Statistics
Matches: 175, Mismatches: 28, Indels: 29
0.75 0.12 0.12
Matches are distributed among these distances:
45 1 0.01
46 72 0.41
47 71 0.41
48 29 0.17
49 2 0.01
ACGTcount: A:0.23, C:0.30, G:0.19, T:0.28
Consensus pattern (47 bp):
CGATGCATGTCCCAGACATGTCTTACACTGGCTCTCGTCTCGTAGGC
Found at i:101334084 original size:134 final size:133
Alignment explanation
Indices: 101333837--101334101 Score: 397
Period size: 134 Copynumber: 2.0 Consensus size: 133
101333827 CTTACACATC
* * * *
101333837 TTATTGATTATAATGAAAGCATCATCTTCTAATATGACATTTTGATGTCTCAAATCTACAGCAAT
1 TTATTCATTATAATGAAAGCATCATCTTCTAATATGACATTTTGATGACCCAAATATACAGCAAT
* *
101333902 CTTCAAAGCATGGAGACATGCAATGGTTTCAATCCGCATACGAGTAGAGAACAAAAAGAAGAAAA
66 CTTCAAAGCATGGAGACATGCAATGCTTTCAATCCGCATACGACTAGAGAACAAAAA-AAGAAAA
101333967 GTTT
130 GTTT
* *
101333971 TTATTCATTATAATGAAAGCATCTTCTTCTAATATGACATTTTGATGACCCAAATATACTGCAAT
1 TTATTCATTATAATGAAAGCATCATCTTCTAATATGACATTTTGATGACCCAAATATACAGCAAT
* * * *
101334036 CTTCAAAGTATGGAGATATGCAATGCTTTCAATCAC-CATATGACTAGAGAACTAAAAAAGAAAA
66 CTTCAAAGCATGGAGACATGCAATGCTTTCAATC-CGCATACGACTAGAGAACAAAAAAAGAAAA
101334100 GT
130 GT
101334102 CATGTTGAGA
Statistics
Matches: 118, Mismatches: 12, Indels: 3
0.89 0.09 0.02
Matches are distributed among these distances:
133 9 0.08
134 108 0.92
135 1 0.01
ACGTcount: A:0.39, C:0.16, G:0.15, T:0.30
Consensus pattern (133 bp):
TTATTCATTATAATGAAAGCATCATCTTCTAATATGACATTTTGATGACCCAAATATACAGCAAT
CTTCAAAGCATGGAGACATGCAATGCTTTCAATCCGCATACGACTAGAGAACAAAAAAAGAAAAG
TTT
Found at i:101345091 original size:14 final size:14
Alignment explanation
Indices: 101345072--101345098 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
101345062 AAAGATATTC
101345072 TTTTTCTAAATAAA
1 TTTTTCTAAATAAA
101345086 TTTTTCTAAATAA
1 TTTTTCTAAATAA
101345099 GATTGAATCA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.41, C:0.07, G:0.00, T:0.52
Consensus pattern (14 bp):
TTTTTCTAAATAAA
Found at i:101353595 original size:220 final size:220
Alignment explanation
Indices: 101353202--101354937 Score: 2853
Period size: 220 Copynumber: 7.9 Consensus size: 220
101353192 GTAACAGGCT
* * *
101353202 AAAG-CATAGCATATCTAAACTTTGGATGTTTTCAAATCAAAGCGGATCCAAGATGATTTGGCAT
1 AAAGACATAGCAGATCTAACCTTTGGATGTTTTCACATCAAAGCGGATCCAAGATGATTTGGCAT
* *
101353266 CTTTGTGTTTACAAGGAACAAATCAAAGCCATAGCAGATCTGACCTTCAGATGTTTACACTGAAG
66 CTTTGTGTTTACAAGGAACAAATCGAAGGCATAGCAGATCTGACCTTCAGATGTTTACACTGAAG
* * * *
101353331 TAGATTCAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGAAACAGATTTGGCAT
131 CAGATCCAAGATGATTTAGCATCTCTGTATTGTCAGAGAACAAATCGAAGAAACAAATTTGGCAT
* *
101353396 CTCCATATTCGACGAAGAGTAGATT
196 CTCCATATTCGACGGAGAGTAGATC
* *
101353421 GAAGACATAGCAGATCTAACCTTTGGATGTTTTCACATCAAAGTGGATCCAAGATGATTTGGCAT
1 AAAGACATAGCAGATCTAACCTTTGGATGTTTTCACATCAAAGCGGATCCAAGATGATTTGGCAT
* * *
101353486 CTTTATGTTTACAAGGAACAAATTGAAGGCATAGCAGATCTGACCTTTAGATGTTTACACTGAAG
66 CTTTGTGTTTACAAGGAACAAATCGAAGGCATAGCAGATCTGACCTTCAGATGTTTACACTGAAG
* *
101353551 CAGATCCAAGATGATTTAGCATCTCTGTATTATCAGAAAACAAATCGAAGAAACAAATTTGGCAT
131 CAGATCCAAGATGATTTAGCATCTCTGTATTGTCAGAGAACAAATCGAAGAAACAAATTTGGCAT
*
101353616 CTCCATATTCGACGGAGAGCAGATC
196 CTCCATATTCGACGGAGAGTAGATC
*
101353641 AAAGACATGGCAGATCTAACCTTTGGATGTTTTCACATCAAAGCGGATCCAAGATGATTTGGCAT
1 AAAGACATAGCAGATCTAACCTTTGGATGTTTTCACATCAAAGCGGATCCAAGATGATTTGGCAT
* *
101353706 CTTTGTGTTTACAAGGAACAAATCAAAGGCATAGCAGATTTGACCTTCAGATGTTTACACTGAAG
66 CTTTGTGTTTACAAGGAACAAATCGAAGGCATAGCAGATCTGACCTTCAGATGTTTACACTGAAG
* * * * *
101353771 CAGATTCAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATTGAAGAAATAGATTTGGCAT
131 CAGATCCAAGATGATTTAGCATCTCTGTATTGTCAGAGAACAAATCGAAGAAACAAATTTGGCAT
* *
101353836 CTCCATATTCGACGAAGAGTAGATT
196 CTCCATATTCGACGGAGAGTAGATC
* *
101353861 GAAGACATAGCAGATCTAACCTTTGGATGTTTTCACATCAAAGTGGATCCAAGATGATTTGGCAT
1 AAAGACATAGCAGATCTAACCTTTGGATGTTTTCACATCAAAGCGGATCCAAGATGATTTGGCAT
* * *
101353926 CTTTGTGTTTACAAGGAACAAATTGAAGGCATAGCAGATCTGACATTTAGATGTTTACACTGAAG
66 CTTTGTGTTTACAAGGAACAAATCGAAGGCATAGCAGATCTGACCTTCAGATGTTTACACTGAAG
* *
101353991 CAGATCCAAGATGATTTAGCATCTCTGTATTGCCAGAGAACAAATCGAAGAAACAAAATTGGCAT
131 CAGATCCAAGATGATTTAGCATCTCTGTATTGTCAGAGAACAAATCGAAGAAACAAATTTGGCAT
101354056 CTCCATATTCGACCGGAGAGTAGATC
196 CTCCATATTCGA-CGGAGAGTAGATC
*
101354082 AAAGACATGGCAGATCTAACCTTTGGATGTTTTCACATCAAAGCGGATCCAAGATGATTTGGCAT
1 AAAGACATAGCAGATCTAACCTTTGGATGTTTTCACATCAAAGCGGATCCAAGATGATTTGGCAT
*
101354147 CTTTGTGTTTACAAGGAACAAATCGAAGGCATAGCAGATCTGACCTTTAGATGTTTACACTGAAG
66 CTTTGTGTTTACAAGGAACAAATCGAAGGCATAGCAGATCTGACCTTCAGATGTTTACACTGAAG
*
101354212 CAGATCCAAGATGATTTAGCATCTCTGTATTATCAGAGAACAAATCGAAGAAACAAATTTGGCAT
131 CAGATCCAAGATGATTTAGCATCTCTGTATTGTCAGAGAACAAATCGAAGAAACAAATTTGGCAT
*
101354277 CTCCATATTCGACGGAGAGCAGATC
196 CTCCATATTCGACGGAGAGTAGATC
*
101354302 AAAGACATGGCAGATCTAACCTTTGGATGTTTTCACATCAAAGCGGATCCAAGATGATTTGGCAT
1 AAAGACATAGCAGATCTAACCTTTGGATGTTTTCACATCAAAGCGGATCCAAGATGATTTGGCAT
** *
101354367 CTTTGTGTTTACAAGGAACAAATAAAAGGCATAGCAGATCTGACCTTCAGATGTTTACACTAAAG
66 CTTTGTGTTTACAAGGAACAAATCGAAGGCATAGCAGATCTGACCTTCAGATGTTTACACTGAAG
* * * * *
101354432 CAAATTCAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATTGAAGAAACAGATTTGGCAT
131 CAGATCCAAGATGATTTAGCATCTCTGTATTGTCAGAGAACAAATCGAAGAAACAAATTTGGCAT
* *
101354497 CTCCATATTCGACGAAGAGTAGATT
196 CTCCATATTCGACGGAGAGTAGATC
* * *
101354522 GAAGACATAGCAGATCTAACCTTCGGATGTTTTCACATCAAAGTGGATCCAAGATGATTTGGCAT
1 AAAGACATAGCAGATCTAACCTTTGGATGTTTTCACATCAAAGCGGATCCAAGATGATTTGGCAT
* * *
101354587 CTTTGTGTTTATAAGGAACAAATTGAAGGCATAGCAGATCTGACCTTTAGATGTTTACACTGAAG
66 CTTTGTGTTTACAAGGAACAAATCGAAGGCATAGCAGATCTGACCTTCAGATGTTTACACTGAAG
* * * *
101354652 CAGATTCAAGATGATTTAGCATCTCTGTATAGCCAGAGAACAAATCGAAGAAACAAAATTGGCAT
131 CAGATCCAAGATGATTTAGCATCTCTGTATTGTCAGAGAACAAATCGAAGAAACAAATTTGGCAT
* *
101354717 CTTCATATTCGACGGAGAGCAGATC
196 CTCCATATTCGACGGAGAGTAGATC
*
101354742 AAAGACATGGCAGATCTAACCTTTGGATGTTTTCACATCAAAGCGGATCCAAGATGATTTGGCAT
1 AAAGACATAGCAGATCTAACCTTTGGATGTTTTCACATCAAAGCGGATCCAAGATGATTTGGCAT
*
101354807 CTTTGTGTTTACAAGGAACAAATCGAAGGCATAGCAGATCTGACCATCAGATGTTTACACTGAAG
66 CTTTGTGTTTACAAGGAACAAATCGAAGGCATAGCAGATCTGACCTTCAGATGTTTACACTGAAG
* *
101354872 CAGATCCAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGAAACAGATTTGGCAT
131 CAGATCCAAGATGATTTAGCATCTCTGTATTGTCAGAGAACAAATCGAAGAAACAAATTTGGCAT
101354937 C
196 C
101354938 CTCGTGTTTA
Statistics
Matches: 1405, Mismatches: 110, Indels: 3
0.93 0.07 0.00
Matches are distributed among these distances:
219 3 0.00
220 1192 0.85
221 210 0.15
ACGTcount: A:0.34, C:0.17, G:0.20, T:0.28
Consensus pattern (220 bp):
AAAGACATAGCAGATCTAACCTTTGGATGTTTTCACATCAAAGCGGATCCAAGATGATTTGGCAT
CTTTGTGTTTACAAGGAACAAATCGAAGGCATAGCAGATCTGACCTTCAGATGTTTACACTGAAG
CAGATCCAAGATGATTTAGCATCTCTGTATTGTCAGAGAACAAATCGAAGAAACAAATTTGGCAT
CTCCATATTCGACGGAGAGTAGATC
Found at i:101354032 original size:87 final size:89
Alignment explanation
Indices: 101353858--101354041 Score: 212
Period size: 87 Copynumber: 2.1 Consensus size: 89
101353848 CGAAGAGTAG
* * * ** *
101353858 ATTGAAGACATAGCAGATCTAACCTTTGGATGTTTTCACATCAAAGTGGATCCAAGATGATTTGG
1 ATTGAAGACATAGCAGATCTAACATTTAGATGTTTACACATCAAAGCAGATCCAAGATGATTTAG
* * *
101353923 CATCTTTGTGTTTACAAGGAACAA
66 CATCTCTGTATTGACAAGGAACAA
* * *
101353947 ATTGAAGGCATAGCAGATCTGACATTTAGATGTTTACAC-T-GAAGCAGATCCAAGATGATTTAG
1 ATTGAAGACATAGCAGATCTAACATTTAGATGTTTACACATCAAAGCAGATCCAAGATGATTTAG
*
101354010 CATCTCTGTATTG-CCAGAGAACAA
66 CATCTCTGTATTGACAAG-GAACAA
*
101354034 ATCGAAGA
1 ATTGAAGA
101354042 AACAAAATTG
Statistics
Matches: 79, Mismatches: 15, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
86 3 0.04
87 41 0.52
88 1 0.01
89 34 0.43
ACGTcount: A:0.34, C:0.16, G:0.21, T:0.29
Consensus pattern (89 bp):
ATTGAAGACATAGCAGATCTAACATTTAGATGTTTACACATCAAAGCAGATCCAAGATGATTTAG
CATCTCTGTATTGACAAGGAACAA
Found at i:101354235 original size:87 final size:89
Alignment explanation
Indices: 101354091--101354261 Score: 224
Period size: 87 Copynumber: 1.9 Consensus size: 89
101354081 CAAAGACATG
* * * * * *
101354091 GCAGATCTAACCTTTGGATGTTTTCACATCAAAGCGGATCCAAGATGATTTGGCATCTTTGTGTT
1 GCAGATCTAACCTTTAGATGTTTACACATCAAAGCAGATCCAAGATGATTTAGCATCTCTGTATT
101354156 -TACA-AGGAACAAATCGAAGGCATA
66 AT-CAGA-GAACAAATCGAAGGCATA
* *
101354180 GCAGATCTGACCTTTAGATGTTTACAC-T-GAAGCAGATCCAAGATGATTTAGCATCTCTGTATT
1 GCAGATCTAACCTTTAGATGTTTACACATCAAAGCAGATCCAAGATGATTTAGCATCTCTGTATT
101354243 ATCAGAGAACAAATCGAAG
66 ATCAGAGAACAAATCGAAG
101354262 AAACAAATTT
Statistics
Matches: 72, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
87 45 0.62
88 3 0.04
89 24 0.33
ACGTcount: A:0.33, C:0.18, G:0.20, T:0.29
Consensus pattern (89 bp):
GCAGATCTAACCTTTAGATGTTTACACATCAAAGCAGATCCAAGATGATTTAGCATCTCTGTATT
ATCAGAGAACAAATCGAAGGCATA
Found at i:101354923 original size:881 final size:881
Alignment explanation
Indices: 101353214--101354937 Score: 2892
Period size: 881 Copynumber: 2.0 Consensus size: 881
101353204 AGCATAGCAT
101353214 ATCTAAACTTTGGATGTTTTCAAATCAAAGCGGATCCAAGATGATTTGGCATCTTTGTGTTTACA
1 ATCTAAACTTTGGATGTTTTCAAATCAAAGCGGATCCAAGATGATTTGGCATCTTTGTGTTTACA
* *
101353279 AGGAACAAATCAAAGCCATAGCAGATCTGACCTTCAGATGTTTACACTGAAGTAGATTCAAGATG
66 AGGAACAAATCAAAGCCATAGCAGATCTGACCTTCAGATGTTTACACTGAAGCAGATCCAAGATG
* * *
101353344 ATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTCGAC
131 ATTTAGCATCTCTGTATTATCAGAGAACAAATCGAAGAAACAAATTTGGCATCTCCATATTCGAC
* ** *
101353409 GAAGAGTAGATTGAAGACATAGCAGATCTAACCTTTGGATGTTTTCACATCAAAGTGGATCCAAG
196 GAAGAGCAGATCAAAGACATAGCAGATCTAACCTTTGGATGTTTTCACATCAAAGCGGATCCAAG
** *
101353474 ATGATTTGGCATCTTTATGTTTACAAGGAACAAATTGAAGGCATAGCAGATCTGACCTTTAGATG
261 ATGATTTGGCATCTTTATGTTTACAAGGAACAAATAAAAGGCATAGCAGATCTGACCTTCAGATG
* *
101353539 TTTACACTGAAGCAGATCCAAGATGATTTAGCATCTCTGTATTATCAGAAAACAAATCGAAGAAA
326 TTTACACTAAAGCAAATCCAAGATGATTTAGCATCTCTGTATTATCAGAAAACAAATCGAAGAAA
* * *
101353604 CAAATTTGGCATCTCCATATTCGACGGAGAGCAGATCAAAGACATGGCAGATCTAACCTTTGGAT
391 CAAATTTGGCATCTCCATATTCGACGAAGAGCAGATCAAAGACATAGCAGATCTAACCTTCGGAT
101353669 GTTTTCACATCAAAGCGGATCCAAGATGATTTGGCATCTTTGTGTTTACAAGGAACAAATCAAAG
456 GTTTTCACATCAAAGCGGATCCAAGATGATTTGGCATCTTTGTGTTTACAAGGAACAAATCAAAG
* *
101353734 GCATAGCAGATTTGACCTTCAGATGTTTACACTGAAGCAGATTCAAGATGATTTGGCATCTCTGT
521 GCATAGCAGATCTGACCTTCAGATGTTTACACTGAAGCAGATTCAAGATGATTTAGCATCTCTGT
* * * * * * * **
101353799 ATTGTCAGAGAACAAATTGAAGAAATAGATTTGGCATCTCCATATTCGACGAAGAGTAGATTGAA
586 ATAGCCAGAGAACAAATCGAAGAAACAAAATTGGCATCTCCATATTCGACGAAGAGCAGATCAAA
*
101353864 GACATAGCAGATCTAACCTTTGGATGTTTTCACATCAAAGTGGATCCAAGATGATTTGGCATCTT
651 GACATAGCAGATCTAACCTTTGGATGTTTTCACATCAAAGCGGATCCAAGATGATTTGGCATCTT
* *
101353929 TGTGTTTACAAGGAACAAATTGAAGGCATAGCAGATCTGACATTTAGATGTTTACACTGAAGCAG
716 TGTGTTTACAAGGAACAAATCGAAGGCATAGCAGATCTGACATTCAGATGTTTACACTGAAGCAG
101353994 ATCCAAGATGATTTAGCATCTCTGTATTGCCAGAGAACAAATCGAAGAAACAAAATTGGCATCTC
781 ATCCAAGATGATTTAGCATCTCTGTATTGCCAGAGAACAAATCGAAGAAACAAAATTGGCATCTC
101354059 CATATTCGACCGGAGAGTAGATCAAAGACATGGCAG
846 CATATTCGACCGGAGAGTAGATCAAAGACATGGCAG
* *
101354095 ATCTAACCTTTGGATGTTTTCACATCAAAGCGGATCCAAGATGATTTGGCATCTTTGTGTTTACA
1 ATCTAAACTTTGGATGTTTTCAAATCAAAGCGGATCCAAGATGATTTGGCATCTTTGTGTTTACA
* * *
101354160 AGGAACAAATCGAAGGCATAGCAGATCTGACCTTTAGATGTTTACACTGAAGCAGATCCAAGATG
66 AGGAACAAATCAAAGCCATAGCAGATCTGACCTTCAGATGTTTACACTGAAGCAGATCCAAGATG
101354225 ATTTAGCATCTCTGTATTATCAGAGAACAAATCGAAGAAACAAATTTGGCATCTCCATATTCGAC
131 ATTTAGCATCTCTGTATTATCAGAGAACAAATCGAAGAAACAAATTTGGCATCTCCATATTCGAC
* *
101354290 GGAGAGCAGATCAAAGACATGGCAGATCTAACCTTTGGATGTTTTCACATCAAAGCGGATCCAAG
196 GAAGAGCAGATCAAAGACATAGCAGATCTAACCTTTGGATGTTTTCACATCAAAGCGGATCCAAG
*
101354355 ATGATTTGGCATCTTTGTGTTTACAAGGAACAAATAAAAGGCATAGCAGATCTGACCTTCAGATG
261 ATGATTTGGCATCTTTATGTTTACAAGGAACAAATAAAAGGCATAGCAGATCTGACCTTCAGATG
* * * * *
101354420 TTTACACTAAAGCAAATTCAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATTGAAGAAA
326 TTTACACTAAAGCAAATCCAAGATGATTTAGCATCTCTGTATTATCAGAAAACAAATCGAAGAAA
* * **
101354485 CAGATTTGGCATCTCCATATTCGACGAAGAGTAGATTGAAGACATAGCAGATCTAACCTTCGGAT
391 CAAATTTGGCATCTCCATATTCGACGAAGAGCAGATCAAAGACATAGCAGATCTAACCTTCGGAT
* * **
101354550 GTTTTCACATCAAAGTGGATCCAAGATGATTTGGCATCTTTGTGTTTATAAGGAACAAATTGAAG
456 GTTTTCACATCAAAGCGGATCCAAGATGATTTGGCATCTTTGTGTTTACAAGGAACAAATCAAAG
*
101354615 GCATAGCAGATCTGACCTTTAGATGTTTACACTGAAGCAGATTCAAGATGATTTAGCATCTCTGT
521 GCATAGCAGATCTGACCTTCAGATGTTTACACTGAAGCAGATTCAAGATGATTTAGCATCTCTGT
* *
101354680 ATAGCCAGAGAACAAATCGAAGAAACAAAATTGGCATCTTCATATTCGACGGAGAGCAGATCAAA
586 ATAGCCAGAGAACAAATCGAAGAAACAAAATTGGCATCTCCATATTCGACGAAGAGCAGATCAAA
*
101354745 GACATGGCAGATCTAACCTTTGGATGTTTTCACATCAAAGCGGATCCAAGATGATTTGGCATCTT
651 GACATAGCAGATCTAACCTTTGGATGTTTTCACATCAAAGCGGATCCAAGATGATTTGGCATCTT
101354810 TGTGTTTACAAGGAACAAATCGAAGGCATAGCAGATCTGACCA-TCAGATGTTTACACTGAAGCA
716 TGTGTTTACAAGGAACAAATCGAAGGCATAGCAGATCTGA-CATTCAGATGTTTACACTGAAGCA
* * * *
101354874 GATCCAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATC
780 GATCCAAGATGATTTAGCATCTCTGTATTGCCAGAGAACAAATCGAAGAAACAAAATTGGCATC
101354938 CTCGTGTTTA
Statistics
Matches: 782, Mismatches: 60, Indels: 2
0.93 0.07 0.00
Matches are distributed among these distances:
881 780 1.00
882 2 0.00
ACGTcount: A:0.34, C:0.17, G:0.20, T:0.28
Consensus pattern (881 bp):
ATCTAAACTTTGGATGTTTTCAAATCAAAGCGGATCCAAGATGATTTGGCATCTTTGTGTTTACA
AGGAACAAATCAAAGCCATAGCAGATCTGACCTTCAGATGTTTACACTGAAGCAGATCCAAGATG
ATTTAGCATCTCTGTATTATCAGAGAACAAATCGAAGAAACAAATTTGGCATCTCCATATTCGAC
GAAGAGCAGATCAAAGACATAGCAGATCTAACCTTTGGATGTTTTCACATCAAAGCGGATCCAAG
ATGATTTGGCATCTTTATGTTTACAAGGAACAAATAAAAGGCATAGCAGATCTGACCTTCAGATG
TTTACACTAAAGCAAATCCAAGATGATTTAGCATCTCTGTATTATCAGAAAACAAATCGAAGAAA
CAAATTTGGCATCTCCATATTCGACGAAGAGCAGATCAAAGACATAGCAGATCTAACCTTCGGAT
GTTTTCACATCAAAGCGGATCCAAGATGATTTGGCATCTTTGTGTTTACAAGGAACAAATCAAAG
GCATAGCAGATCTGACCTTCAGATGTTTACACTGAAGCAGATTCAAGATGATTTAGCATCTCTGT
ATAGCCAGAGAACAAATCGAAGAAACAAAATTGGCATCTCCATATTCGACGAAGAGCAGATCAAA
GACATAGCAGATCTAACCTTTGGATGTTTTCACATCAAAGCGGATCCAAGATGATTTGGCATCTT
TGTGTTTACAAGGAACAAATCGAAGGCATAGCAGATCTGACATTCAGATGTTTACACTGAAGCAG
ATCCAAGATGATTTAGCATCTCTGTATTGCCAGAGAACAAATCGAAGAAACAAAATTGGCATCTC
CATATTCGACCGGAGAGTAGATCAAAGACATGGCAG
Found at i:101354963 original size:130 final size:131
Alignment explanation
Indices: 101354797--101355076 Score: 420
Period size: 130 Copynumber: 2.1 Consensus size: 131
101354787 GATCCAAGAT
* * *
101354797 GATTTGGCATCTTTGTGTTTACAAGGAACAAATCGAAGGCATAGCAGATCTGACCATCAGATGTT
1 GATTTGGCATCCTCGTGTTTACAAGGAACAAATCGAAGGCATAGCAGATCTAACCATCAGATGTT
101354862 TACACTGAAGCAGATCCAAGATGATTTGGCATCTCTGTA-TTGTCAGAGAACAAATCGAAGAAAC
66 TACACTGAAGCAGATCCAAGATGATTTGGCATCTCTGTATTTGTCAGAGAACAAATCGAAGAAAC
101354926 A
131 A
* *
101354927 GATTTGGCATCCTCGTGTTTACAAGGAGCAAATCGAAGGCATAGCAGATCTAACCTTCAGATGTT
1 GATTTGGCATCCTCGTGTTTACAAGGAACAAATCGAAGGCATAGCAGATCTAACCATCAGATGTT
** * * * * *
101354992 TACGTTGAAGCAGATCCAAGATGATTTGGCATTTCTGTATTTTTCAGGGAACAAATTGAAGAAGC
66 TACACTGAAGCAGATCCAAGATGATTTGGCATCTCTGTATTTGTCAGAGAACAAATCGAAGAAAC
101355057 A
131 A
*
101355058 GATTTGTCAT-CTCTGTGTT
1 GATTTGGCATCCTC-GTGTT
101355077 CGACGGAGAG
Statistics
Matches: 135, Mismatches: 13, Indels: 3
0.89 0.09 0.02
Matches are distributed among these distances:
130 99 0.73
131 36 0.27
ACGTcount: A:0.31, C:0.17, G:0.22, T:0.29
Consensus pattern (131 bp):
GATTTGGCATCCTCGTGTTTACAAGGAACAAATCGAAGGCATAGCAGATCTAACCATCAGATGTT
TACACTGAAGCAGATCCAAGATGATTTGGCATCTCTGTATTTGTCAGAGAACAAATCGAAGAAAC
A
Found at i:101356847 original size:27 final size:29
Alignment explanation
Indices: 101356811--101356881 Score: 76
Period size: 27 Copynumber: 2.5 Consensus size: 29
101356801 ATTTTTTTAT
*
101356811 TATA-TATTTTGTTGTAT-ATATATATT-
1 TATACTATTTTGTTATATGATATATATTA
* * *
101356837 TATTCTATTTTTTTATATGTTATATATTA
1 TATACTATTTTGTTATATGATATATATTA
101356866 TATACTATTTATGTTA
1 TATACTATTT-TGTTA
101356882 CTATATTTTT
Statistics
Matches: 35, Mismatches: 6, Indels: 4
0.78 0.13 0.09
Matches are distributed among these distances:
26 3 0.09
27 11 0.31
28 8 0.23
29 9 0.26
30 4 0.11
ACGTcount: A:0.30, C:0.03, G:0.06, T:0.62
Consensus pattern (29 bp):
TATACTATTTTGTTATATGATATATATTA
Found at i:101369084 original size:17 final size:17
Alignment explanation
Indices: 101369062--101369123 Score: 67
Period size: 17 Copynumber: 3.8 Consensus size: 17
101369052 AAGTTAAAGG
101369062 AATGAAAATAAATAAAT
1 AATGAAAATAAATAAAT
* *
101369079 AATGAAAAGAAAAAAAT
1 AATGAAAATAAATAAAT
*
101369096 AA-GAAAA-AAATAAACA
1 AATGAAAATAAATAAA-T
101369112 AATG-AAATAAAT
1 AATGAAAATAAAT
101369124 CGATAAACCA
Statistics
Matches: 38, Mismatches: 4, Indels: 6
0.79 0.08 0.12
Matches are distributed among these distances:
15 6 0.16
16 10 0.26
17 22 0.58
ACGTcount: A:0.74, C:0.02, G:0.08, T:0.16
Consensus pattern (17 bp):
AATGAAAATAAATAAAT
Found at i:101374532 original size:16 final size:17
Alignment explanation
Indices: 101374511--101374543 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
101374501 TAAAATCTAG
101374511 CCATTTCAACC-TAAAT
1 CCATTTCAACCATAAAT
*
101374527 CCATTTTAACCATAAAT
1 CCATTTCAACCATAAAT
101374544 GCAAATGACT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 10 0.67
17 5 0.33
ACGTcount: A:0.39, C:0.27, G:0.00, T:0.33
Consensus pattern (17 bp):
CCATTTCAACCATAAAT
Found at i:101379312 original size:21 final size:21
Alignment explanation
Indices: 101379286--101379328 Score: 86
Period size: 21 Copynumber: 2.0 Consensus size: 21
101379276 AGCAATGACA
101379286 TTAGCTTTTCTTGGGTGATAG
1 TTAGCTTTTCTTGGGTGATAG
101379307 TTAGCTTTTCTTGGGTGATAG
1 TTAGCTTTTCTTGGGTGATAG
101379328 T
1 T
101379329 CAATGAGCAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.14, C:0.09, G:0.28, T:0.49
Consensus pattern (21 bp):
TTAGCTTTTCTTGGGTGATAG
Found at i:101382041 original size:29 final size:29
Alignment explanation
Indices: 101382008--101382099 Score: 75
Period size: 29 Copynumber: 3.2 Consensus size: 29
101381998 AGCCCAAGTT
101382008 GAGTTCTATTCAGAAAAGGCCAATTTTGA
1 GAGTTCTATTCAGAAAAGGCCAATTTTGA
* *** * *
101382037 GAGTTCT-TTCCCTGCCGAGCCCAA-GTT--
1 GAGTTCTATT--CAGAAAAGGCCAATTTTGA
*
101382064 GAGTTCTATTTAGAAAAGGCCAATTTTGA
1 GAGTTCTATTCAGAAAAGGCCAATTTTGA
101382093 GAGTTCT
1 GAGTTCT
101382100 TAGGCATTCT
Statistics
Matches: 44, Mismatches: 13, Indels: 12
0.64 0.19 0.17
Matches are distributed among these distances:
26 7 0.16
27 9 0.20
28 4 0.09
29 16 0.36
30 8 0.18
ACGTcount: A:0.27, C:0.18, G:0.22, T:0.33
Consensus pattern (29 bp):
GAGTTCTATTCAGAAAAGGCCAATTTTGA
Found at i:101382079 original size:56 final size:56
Alignment explanation
Indices: 101381989--101382100 Score: 215
Period size: 56 Copynumber: 2.0 Consensus size: 56
101381979 CATGGGCGTG
101381989 TCCCTGCCGAGCCCAAGTTGAGTTCTATTCAGAAAAGGCCAATTTTGAGAGTTCTT
1 TCCCTGCCGAGCCCAAGTTGAGTTCTATTCAGAAAAGGCCAATTTTGAGAGTTCTT
*
101382045 TCCCTGCCGAGCCCAAGTTGAGTTCTATTTAGAAAAGGCCAATTTTGAGAGTTCTT
1 TCCCTGCCGAGCCCAAGTTGAGTTCTATTCAGAAAAGGCCAATTTTGAGAGTTCTT
101382101 AGGCATTCTA
Statistics
Matches: 55, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
56 55 1.00
ACGTcount: A:0.25, C:0.22, G:0.21, T:0.31
Consensus pattern (56 bp):
TCCCTGCCGAGCCCAAGTTGAGTTCTATTCAGAAAAGGCCAATTTTGAGAGTTCTT
Found at i:101385000 original size:26 final size:24
Alignment explanation
Indices: 101384971--101385023 Score: 63
Period size: 26 Copynumber: 2.1 Consensus size: 24
101384961 ATTTTAATAA
101384971 TATAATA-ATATAATAAAATGATATTT
1 TATAATATATA-AAT-AAATG-TATTT
*
101384997 TATAATATTTAAATAAATGTATTT
1 TATAATATATAAATAAATGTATTT
101385021 TAT
1 TAT
101385024 TTTACCAAAT
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
24 8 0.32
25 5 0.20
26 10 0.40
27 2 0.08
ACGTcount: A:0.49, C:0.00, G:0.04, T:0.47
Consensus pattern (24 bp):
TATAATATATAAATAAATGTATTT
Found at i:101385432 original size:48 final size:48
Alignment explanation
Indices: 101385361--101385456 Score: 183
Period size: 48 Copynumber: 2.0 Consensus size: 48
101385351 ATATCAAAGA
*
101385361 TAGAAAATGTACCAGTGATTACACTAGGTGTTGAAGCTTCCTCTCGAG
1 TAGAAAATGTACCAGTGATTACACTAGGTGTTAAAGCTTCCTCTCGAG
101385409 TAGAAAATGTACCAGTGATTACACTAGGTGTTAAAGCTTCCTCTCGAG
1 TAGAAAATGTACCAGTGATTACACTAGGTGTTAAAGCTTCCTCTCGAG
101385457 CCTGAATTGT
Statistics
Matches: 47, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
48 47 1.00
ACGTcount: A:0.30, C:0.19, G:0.22, T:0.29
Consensus pattern (48 bp):
TAGAAAATGTACCAGTGATTACACTAGGTGTTAAAGCTTCCTCTCGAG
Found at i:101386761 original size:10 final size:10
Alignment explanation
Indices: 101386746--101386794 Score: 55
Period size: 10 Copynumber: 4.8 Consensus size: 10
101386736 ATTAACATTT
101386746 TTAATTTTAA
1 TTAATTTTAA
101386756 TTAATTTTATA
1 TTAATTTTA-A
* *
101386767 TCAAATTTTGA
1 T-TAATTTTAA
101386778 TTAATTTTAA
1 TTAATTTTAA
101386788 TT-ATTTT
1 TTAATTTT
101386795 CGACAAATTT
Statistics
Matches: 33, Mismatches: 4, Indels: 5
0.79 0.10 0.12
Matches are distributed among these distances:
9 5 0.15
10 18 0.55
11 4 0.12
12 6 0.18
ACGTcount: A:0.35, C:0.02, G:0.02, T:0.61
Consensus pattern (10 bp):
TTAATTTTAA
Found at i:101388002 original size:85 final size:85
Alignment explanation
Indices: 101387859--101388037 Score: 349
Period size: 85 Copynumber: 2.1 Consensus size: 85
101387849 GGCCGGCCAT
101387859 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
1 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
101387924 GTAAGGATTAATAAAATAAA
66 GTAAGGATTAATAAAATAAA
101387944 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
1 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
101388009 GTAAGGATTAATAAAATAAA
66 GTAAGGATTAATAAAATAAA
*
101388029 GGGCATGGG
1 GAGCATGGG
101388038 CAATAAAATA
Statistics
Matches: 93, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
85 93 1.00
ACGTcount: A:0.37, C:0.08, G:0.28, T:0.26
Consensus pattern (85 bp):
GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
GTAAGGATTAATAAAATAAA
Found at i:101389313 original size:22 final size:22
Alignment explanation
Indices: 101389286--101389407 Score: 61
Period size: 22 Copynumber: 5.3 Consensus size: 22
101389276 TATGTGTATG
101389286 TGTGATAAGGCCGAATGGCCAA
1 TGTGATAAGGCCGAATGGCCAA
* * *
101389308 TGTGATGAATG-TGAACAT-GCATATA
1 TGTGAT-AAGGCCG-A-ATGGC-CA-A
*
101389333 TGAGATAAGGCCGAATGGCCAA
1 TGTGATAAGGCCGAATGGCCAA
* * ***
101389355 TGTGATGAATG-TGAAAGTGTATATA
1 TGTGAT-AAGGCCG-AA-TGGCCA-A
101389380 TGTGATAAGGCCGAATGGCCAA
1 TGTGATAAGGCCGAATGGCCAA
101389402 TGTGAT
1 TGTGAT
101389408 GGATGTGGAA
Statistics
Matches: 70, Mismatches: 18, Indels: 24
0.62 0.16 0.21
Matches are distributed among these distances:
22 21 0.30
23 17 0.24
24 17 0.24
25 15 0.21
ACGTcount: A:0.34, C:0.11, G:0.30, T:0.25
Consensus pattern (22 bp):
TGTGATAAGGCCGAATGGCCAA
Found at i:101389358 original size:47 final size:47
Alignment explanation
Indices: 101389289--101389435 Score: 215
Period size: 47 Copynumber: 3.1 Consensus size: 47
101389279 GTGTATGTGT
101389289 GATAAGGCCGAATGGCCAATGTGATGAATGTGAACA-TGCATATATGA
1 GATAAGGCCGAATGGCCAATGTGATGAATGTGAA-AGTGCATATATGA
* *
101389336 GATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGT
1 GATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGCATATATGA
* * * * *
101389383 GATAAGGCCGAATGGCCAATGTGATGGATGTGGAAGTGTATAAATGT
1 GATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGCATATATGA
101389430 GATAAG
1 GATAAG
101389436 TCCCGAAGGG
Statistics
Matches: 94, Mismatches: 5, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
46 1 0.01
47 93 0.99
ACGTcount: A:0.35, C:0.10, G:0.31, T:0.25
Consensus pattern (47 bp):
GATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGCATATATGA
Found at i:101401613 original size:32 final size:32
Alignment explanation
Indices: 101401576--101401640 Score: 130
Period size: 32 Copynumber: 2.0 Consensus size: 32
101401566 AATGCTTACC
101401576 ATGCCCATCATCCATTAACTATTAAAATGCTA
1 ATGCCCATCATCCATTAACTATTAAAATGCTA
101401608 ATGCCCATCATCCATTAACTATTAAAATGCTA
1 ATGCCCATCATCCATTAACTATTAAAATGCTA
101401640 A
1 A
101401641 AATGCATACA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 33 1.00
ACGTcount: A:0.38, C:0.25, G:0.06, T:0.31
Consensus pattern (32 bp):
ATGCCCATCATCCATTAACTATTAAAATGCTA
Found at i:101403909 original size:16 final size:16
Alignment explanation
Indices: 101403878--101403911 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
101403868 ACACTGGTGC
*
101403878 TTCAGTCAATACCTTT
1 TTCAGTCAAAACCTTT
*
101403894 TTCAGTCAAAAGCTTT
1 TTCAGTCAAAACCTTT
101403910 TT
1 TT
101403912 GCTGACTCTC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.26, C:0.21, G:0.09, T:0.44
Consensus pattern (16 bp):
TTCAGTCAAAACCTTT
Found at i:101409684 original size:32 final size:32
Alignment explanation
Indices: 101409644--101409708 Score: 121
Period size: 32 Copynumber: 2.0 Consensus size: 32
101409634 AATGCTAATC
*
101409644 ATGCCCATCATCCATTAACTATTAAAATGCTA
1 ATGCCCATCATCCATTAACTAGTAAAATGCTA
101409676 ATGCCCATCATCCATTAACTAGTAAAATGCTA
1 ATGCCCATCATCCATTAACTAGTAAAATGCTA
101409708 A
1 A
101409709 AATGTATACA
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 32 1.00
ACGTcount: A:0.38, C:0.25, G:0.08, T:0.29
Consensus pattern (32 bp):
ATGCCCATCATCCATTAACTAGTAAAATGCTA
Found at i:101412639 original size:19 final size:19
Alignment explanation
Indices: 101412604--101412682 Score: 126
Period size: 19 Copynumber: 4.2 Consensus size: 19
101412594 AGATTAAAAG
101412604 ATCATATCTTCAAGATTGCAT
1 ATCATATC-T-AAGATTGCAT
101412625 ATCATATCTAAGATTG--T
1 ATCATATCTAAGATTGCAT
101412642 ATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGCAT
101412661 ATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGCAT
101412680 ATC
1 ATC
101412683 CTTAAAGATT
Statistics
Matches: 56, Mismatches: 0, Indels: 6
0.90 0.00 0.10
Matches are distributed among these distances:
17 17 0.30
19 30 0.54
20 1 0.02
21 8 0.14
ACGTcount: A:0.35, C:0.16, G:0.10, T:0.38
Consensus pattern (19 bp):
ATCATATCTAAGATTGCAT
Found at i:101412659 original size:36 final size:38
Alignment explanation
Indices: 101412604--101412676 Score: 132
Period size: 36 Copynumber: 2.0 Consensus size: 38
101412594 AGATTAAAAG
101412604 ATCATATCTTCAAGATTGCATATCATATCTAAGATTGT
1 ATCATATCTTCAAGATTGCATATCATATCTAAGATTGT
101412642 ATCATATC-T-AAGATTGCATATCATATCTAAGATTG
1 ATCATATCTTCAAGATTGCATATCATATCTAAGATTG
101412677 CATATCCTTA
Statistics
Matches: 35, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
36 26 0.74
37 1 0.03
38 8 0.23
ACGTcount: A:0.36, C:0.15, G:0.11, T:0.38
Consensus pattern (38 bp):
ATCATATCTTCAAGATTGCATATCATATCTAAGATTGT
Found at i:101412691 original size:36 final size:35
Alignment explanation
Indices: 101412605--101412692 Score: 117
Period size: 36 Copynumber: 2.4 Consensus size: 35
101412595 GATTAAAAGA
101412605 TCATATCTTCAAGATTGCATATCATATCTAAGATTG
1 TCATATCTT-AAGATTGCATATCATATCTAAGATTG
101412641 TATCATATC-TAAGATTGCATATCATATCTAAGATTG
1 --TCATATCTTAAGATTGCATATCATATCTAAGATTG
101412677 -CATATCCTTAAAGATT
1 TCATAT-CTT-AAGATT
101412693 ATATTTCCAT
Statistics
Matches: 47, Mismatches: 0, Indels: 8
0.85 0.00 0.15
Matches are distributed among these distances:
33 5 0.11
34 1 0.02
35 1 0.02
36 32 0.68
37 1 0.02
38 7 0.15
ACGTcount: A:0.35, C:0.16, G:0.10, T:0.39
Consensus pattern (35 bp):
TCATATCTTAAGATTGCATATCATATCTAAGATTG
Found at i:101415907 original size:34 final size:34
Alignment explanation
Indices: 101415858--101415956 Score: 89
Period size: 34 Copynumber: 3.0 Consensus size: 34
101415848 GTTTCAGTTA
* *
101415858 GGGCCTTAGCACATTTCAGAATCAGAAACAGTAT
1 GGGCCTAAGCCCATTTCAGAATCAGAAACAGTAT
* * * *
101415892 GGGCCTGAGCCCATTTCAGTAA-CAGTATCA--CT
1 GGGCCTAAGCCCATTTCAG-AATCAGAAACAGTAT
* *
101415924 GGGCCTAAGCCCATTACAGAATCA-ATACAGTAT
1 GGGCCTAAGCCCATTTCAGAATCAGAAACAGTAT
101415957 ACAATCAGAA
Statistics
Matches: 50, Mismatches: 11, Indels: 9
0.71 0.16 0.13
Matches are distributed among these distances:
31 4 0.08
32 20 0.40
33 1 0.02
34 23 0.46
35 2 0.04
ACGTcount: A:0.32, C:0.24, G:0.20, T:0.23
Consensus pattern (34 bp):
GGGCCTAAGCCCATTTCAGAATCAGAAACAGTAT
Found at i:101416377 original size:27 final size:27
Alignment explanation
Indices: 101416348--101416669 Score: 274
Period size: 27 Copynumber: 12.0 Consensus size: 27
101416338 AGGCAAATCA
* *
101416348 GTCATTTTACCTTATAAGGGTATTAT-A
1 GTCATTTTACCCTATAAGGGTATT-TCG
* * * *
101416375 GTCATTTTATCCTACAAGGGTATTACA
1 GTCATTTTACCCTATAAGGGTATTTCG
* *
101416402 ATCATTTTACCCTAT-AGGGATATTTTG
1 GTCATTTTACCCTATAAGGG-TATTTCG
** * ** *
101416429 GTCATTTTATGCTCTGGGGGTATTTCA
1 GTCATTTTACCCTATAAGGGTATTTCG
**
101416456 GTTGTTTTACCCTATAAGGGTATTTCG
1 GTCATTTTACCCTATAAGGGTATTTCG
** *
101416483 GTCATTTTACCCTATGGGGGTATTTTG
1 GTCATTTTACCCTATAAGGGTATTTCG
*
101416510 GTCGTTTTACCCTAT-AGGGTATTTCG
1 GTCATTTTACCCTATAAGGGTATTTCG
* **
101416536 ATTGTTTTACCCTATGAA-GGTATTTCG
1 GTCATTTTACCCTAT-AAGGGTATTTCG
** *
101416563 GTCATTTTACCCTATGGGGGTATTTCA
1 GTCATTTTACCCTATAAGGGTATTTCG
**
101416590 GTCATTTTACCCTATGGGGGTATTTCG
1 GTCATTTTACCCTATAAGGGTATTTCG
* * **
101416617 GTCGTTTTACCTTATGGGGGTATTTCG
1 GTCATTTTACCCTATAAGGGTATTTCG
* * *
101416644 GCCATTTTAACATATAAGGGTATTTC
1 GTCATTTTACCCTATAAGGGTATTTC
101416670 AGTCTTCATT
Statistics
Matches: 239, Mismatches: 50, Indels: 12
0.79 0.17 0.04
Matches are distributed among these distances:
26 26 0.11
27 209 0.87
28 4 0.02
ACGTcount: A:0.20, C:0.16, G:0.21, T:0.43
Consensus pattern (27 bp):
GTCATTTTACCCTATAAGGGTATTTCG
Found at i:101416589 original size:134 final size:135
Alignment explanation
Indices: 101416406--101416669 Score: 361
Period size: 134 Copynumber: 2.0 Consensus size: 135
101416396 ATTACAATCA
* * ** * **
101416406 TTTTACCCTATAGGGATATTTTGGTCATTTTATGCTCTGGGGGTATTTCAGTTGTTTTACCCTAT
1 TTTTACCCTATAAGGATATTTCGGTCATTTTACCCTATGGGGGTATTTCAGTCATTTTACCCTAT
* * * * *
101416471 AAGGGTATTTCGGTCATTTTACCCTATGGGGGTATTTTGGTCGTTTTACCCTAT-AGGGTATTTC
66 AAGGGTATTTCGGTCATTTTACCCTATGGGGGTATTTCGGCCATTTTAACATATAAGGGTATTTC
101416535 GATTG
131 GATTG
101416540 TTTTACCCTATGAAGG-TATTTCGGTCATTTTACCCTATGGGGGTATTTCAGTCATTTTACCCTA
1 TTTTACCCTAT-AAGGATATTTCGGTCATTTTACCCTATGGGGGTATTTCAGTCATTTTACCCTA
** * *
101416604 TGGGGGTATTTCGGTCGTTTTACCTTATGGGGGTATTTCGGCCATTTTAACATATAAGGGTATTT
65 TAAGGGTATTTCGGTCATTTTACCCTATGGGGGTATTTCGGCCATTTTAACATATAAGGGTATTT
101416669 C
130 C
101416670 AGTCTTCATT
Statistics
Matches: 112, Mismatches: 16, Indels: 3
0.85 0.12 0.02
Matches are distributed among these distances:
134 99 0.88
135 13 0.12
ACGTcount: A:0.18, C:0.16, G:0.23, T:0.43
Consensus pattern (135 bp):
TTTTACCCTATAAGGATATTTCGGTCATTTTACCCTATGGGGGTATTTCAGTCATTTTACCCTAT
AAGGGTATTTCGGTCATTTTACCCTATGGGGGTATTTCGGCCATTTTAACATATAAGGGTATTTC
GATTG
Found at i:101420056 original size:27 final size:27
Alignment explanation
Indices: 101419997--101420114 Score: 121
Period size: 27 Copynumber: 4.4 Consensus size: 27
101419987 AGGGTAAATC
* * * *
101419997 AGTCTTTTTACCTTACAGGGGTGTAAT
1 AGTCATTTTACCCTACAGGGGTATTAT
101420024 AGTCATTTTACCCTACAGGGGTATTAT
1 AGTCATTTTACCCTACAGGGGTATTAT
* * * *
101420051 AATCATTTTACCCTATAGGGGCATTAC
1 AGTCATTTTACCCTACAGGGGTATTAT
* * *
101420078 AGTCATTTTACCTTATA-GGGTATTTT
1 AGTCATTTTACCCTACAGGGGTATTAT
*
101420104 GGTCATTTTAC
1 AGTCATTTTAC
101420115 ACTCTGGGGG
Statistics
Matches: 77, Mismatches: 14, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
26 16 0.21
27 61 0.79
ACGTcount: A:0.25, C:0.17, G:0.18, T:0.41
Consensus pattern (27 bp):
AGTCATTTTACCCTACAGGGGTATTAT
Found at i:101420134 original size:27 final size:27
Alignment explanation
Indices: 101420025--101420298 Score: 221
Period size: 27 Copynumber: 10.2 Consensus size: 27
101420015 GGGTGTAATA
** *
101420025 GTCATTTTACCCTACAGGGGTATTAT-A
1 GTCATTTTACCCTATGGGGGTATT-TCG
* * * * *
101420052 ATCATTTTACCCTATAGGGGCATTACA
1 GTCATTTTACCCTATGGGGGTATTTCG
* * *
101420079 GTCATTTTACCTTAT-AGGGTATTTTG
1 GTCATTTTACCCTATGGGGGTATTTCG
* *
101420105 GTCATTTTACACTCTGGGGGTATTTCG
1 GTCATTTTACCCTATGGGGGTATTTCG
* * *
101420132 GTCATTTTACCTTATGAGGGTATTTCA
1 GTCATTTTACCCTATGGGGGTATTTCG
* * * ***
101420159 ATCGTTTTACCCTTTAAAGGTATTTCG
1 GTCATTTTACCCTATGGGGGTATTTCG
**
101420186 GTTGTTTTACCCTATTGGGGGT-TTTCG
1 GTCATTTTACCCTA-TGGGGGTATTTCG
* *
101420213 GTTATTTTACCCTATAGGGGTATTTCG
1 GTCATTTTACCCTATGGGGGTATTTCG
* *
101420240 GTCGTTTTACCCTATGGGGGTATTCCG
1 GTCATTTTACCCTATGGGGGTATTTCG
* * * *
101420267 GTTATTTTAGCCTATGAGGGTATTTTG
1 GTCATTTTACCCTATGGGGGTATTTCG
101420294 GTCAT
1 GTCAT
101420299 CATTTCGACC
Statistics
Matches: 196, Mismatches: 47, Indels: 8
0.78 0.19 0.03
Matches are distributed among these distances:
26 24 0.12
27 168 0.86
28 4 0.02
ACGTcount: A:0.19, C:0.16, G:0.22, T:0.43
Consensus pattern (27 bp):
GTCATTTTACCCTATGGGGGTATTTCG
Found at i:101420136 original size:53 final size:53
Alignment explanation
Indices: 101420024--101420168 Score: 155
Period size: 53 Copynumber: 2.7 Consensus size: 53
101420014 GGGGTGTAAT
* * * *
101420024 AGTCATTTTACCCTACAGGGGTATTATAATCATTTTACCCTATAGGGGCATTAC
1 AGTCATTTTACCTTATA-GGGTATTTTAATCATTTTACACTATAGGGGCATTAC
** * * * *
101420078 AGTCATTTTACCTTATAGGGTATTTTGGTCATTTTACACTCTGGGGGTATTTC
1 AGTCATTTTACCTTATAGGGTATTTTAATCATTTTACACTATAGGGGCATTAC
* * *
101420131 GGTCATTTTACCTTATGAGGGTATTTCAATCGTTTTAC
1 AGTCATTTTACCTTAT-AGGGTATTTTAATCATTTTAC
101420169 CCTTTAAAGG
Statistics
Matches: 75, Mismatches: 15, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
53 43 0.57
54 32 0.43
ACGTcount: A:0.23, C:0.17, G:0.19, T:0.41
Consensus pattern (53 bp):
AGTCATTTTACCTTATAGGGTATTTTAATCATTTTACACTATAGGGGCATTAC
Found at i:101420262 original size:81 final size:81
Alignment explanation
Indices: 101420053--101420298 Score: 257
Period size: 81 Copynumber: 3.0 Consensus size: 81
101420043 GGTATTATAA
* * * * * * *
101420053 TCATTTTACCCTATAGGGGCATTACAGTCATTTTACCTTATAGGGTATTTTGGTCATTTTACACT
1 TCATTTTACCCTATAGGGGTATTTCAGTCGTTTTACCCTATAGGGTATTTCGGTTATTTTACCCT
*
101420118 -CTGGGGGTATTTCGG
66 ATTGGGGGTATTTCGG
* * * * *
101420133 TCATTTTACCTTAT-GAGGGTATTTCAATCGTTTTACCCTTTAAAGGTATTTCGGTTGTTTTACC
1 TCATTTTACCCTATAG-GGGTATTTCAGTCGTTTTACCCTAT-AGGGTATTTCGGTTATTTTACC
101420197 CTATTGGGGGT-TTTCGG
64 CTATTGGGGGTATTTCGG
* * * * *
101420214 TTATTTTACCCTATAGGGGTATTTCGGTCGTTTTACCCTATGGGGGTATTCCGGTTATTTTAGCC
1 TCATTTTACCCTATAGGGGTATTTCAGTCGTTTTACCCTAT-AGGGTATTTCGGTTATTTTACCC
* *
101420279 TA-TGAGGGTATTTTGG
65 TATTGGGGGTATTTCGG
101420295 TCAT
1 TCAT
101420299 CATTTCGACC
Statistics
Matches: 134, Mismatches: 27, Indels: 9
0.79 0.16 0.05
Matches are distributed among these distances:
79 1 0.01
80 38 0.28
81 87 0.65
82 8 0.06
ACGTcount: A:0.18, C:0.16, G:0.22, T:0.43
Consensus pattern (81 bp):
TCATTTTACCCTATAGGGGTATTTCAGTCGTTTTACCCTATAGGGTATTTCGGTTATTTTACCCT
ATTGGGGGTATTTCGG
Found at i:101423996 original size:30 final size:30
Alignment explanation
Indices: 101423960--101424023 Score: 92
Period size: 30 Copynumber: 2.1 Consensus size: 30
101423950 ATCAATAAAC
*
101423960 CATCGTTGCCGAACGATCAGGGTGGTAGGT
1 CATCGTTGCCGAACGATCAAGGTGGTAGGT
* **
101423990 CATCGTTGCTGGGCGATCAAGGTGGTAGGT
1 CATCGTTGCCGAACGATCAAGGTGGTAGGT
101424020 CATC
1 CATC
101424024 ACTGTCCGGC
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.19, C:0.20, G:0.36, T:0.25
Consensus pattern (30 bp):
CATCGTTGCCGAACGATCAAGGTGGTAGGT
Found at i:101426194 original size:27 final size:26
Alignment explanation
Indices: 101426157--101426298 Score: 113
Period size: 27 Copynumber: 5.3 Consensus size: 26
101426147 AGCATGACTG
* *
101426157 CCAGAACAGATAATGTGATAAAGTCA
1 CCAGAACAGATAATGTGACAAAGCCA
* *
101426183 CCAGATACAGATAATCGTGGCAGAGCCA
1 CCAGA-ACAGATAAT-GTGACAAAGCCA
* *
101426211 CCAGAACAGATATATGTGGCAGAGCCA
1 CCAGAACAGATA-ATGTGACAAAGCCA
* * * *
101426238 CCAGATCAAATATTTGTGGCAAAGCCA
1 CCAGAACAGATA-ATGTGACAAAGCCA
* * * *
101426265 CCAGATCAGATATTTGTGGCATAGCCA
1 CCAGAACAGATA-ATGTGACAAAGCCA
101426292 CCAGAAC
1 CCAGAAC
101426299 GCTTCCTCCA
Statistics
Matches: 102, Mismatches: 11, Indels: 5
0.86 0.09 0.04
Matches are distributed among these distances:
26 5 0.05
27 82 0.80
28 15 0.15
ACGTcount: A:0.37, C:0.23, G:0.22, T:0.18
Consensus pattern (26 bp):
CCAGAACAGATAATGTGACAAAGCCA
Found at i:101426216 original size:54 final size:54
Alignment explanation
Indices: 101426157--101426296 Score: 156
Period size: 54 Copynumber: 2.6 Consensus size: 54
101426147 AGCATGACTG
* * * *
101426157 CCAGAACAGATA-ATGTGATAAAGTCACCAGATACAGATAATCGTGGCAGAGCCA
1 CCAGAACAGATATATGTGACAAAGCCACCAGAT-CAAATAATCGTGGCAAAGCCA
* * * *
101426211 CCAGAACAGATATATGTGGCAGAGCCACCAGATCAAATATTTGTGGCAAAGCCA
1 CCAGAACAGATATATGTGACAAAGCCACCAGATCAAATAATCGTGGCAAAGCCA
* * * *
101426265 CCAGATCAGATATTTGTGGCATAGCCACCAGA
1 CCAGAACAGATATATGTGACAAAGCCACCAGA
101426297 ACGCTTCCTC
Statistics
Matches: 74, Mismatches: 11, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
54 58 0.78
55 16 0.22
ACGTcount: A:0.37, C:0.22, G:0.22, T:0.19
Consensus pattern (54 bp):
CCAGAACAGATATATGTGACAAAGCCACCAGATCAAATAATCGTGGCAAAGCCA
Found at i:101427941 original size:26 final size:26
Alignment explanation
Indices: 101427905--101427985 Score: 114
Period size: 26 Copynumber: 3.2 Consensus size: 26
101427895 CATGAAATTG
101427905 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
101427931 TTATCATGAAACATTTACCTAACCC-
1 TTATCATGAAACATTTACCTAACCCA
* * *
101427956 --ATGATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
101427980 TTATCA
1 TTATCA
101427986 ATTTGTATCA
Statistics
Matches: 48, Mismatches: 4, Indels: 6
0.83 0.07 0.10
Matches are distributed among these distances:
23 20 0.42
26 28 0.58
ACGTcount: A:0.37, C:0.25, G:0.06, T:0.32
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:101432066 original size:25 final size:26
Alignment explanation
Indices: 101431967--101432104 Score: 170
Period size: 27 Copynumber: 5.2 Consensus size: 26
101431957 AGCATGGCTG
* * * *
101431967 CCAGAACAGATAATGTGACAGAGTCA
1 CCAGATCAGATATTGTGGCAGAGCCA
*
101431993 CCAGATACAGATAATCGTGGCAGAGCCA
1 CCAGAT-CAGAT-ATTGTGGCAGAGCCA
*
101432021 CCAGAACAGATATATGTGGCAGAGCCA
1 CCAGATCAGATAT-TGTGGCAGAGCCA
101432048 CCAGATCAGATATTG-GGCAGAGCCA
1 CCAGATCAGATATTGTGGCAGAGCCA
*
101432073 CCAGATCAGATATTTGTGGCATAGCCA
1 CCAGATCAGATA-TTGTGGCAGAGCCA
101432100 CCAGA
1 CCAGA
101432105 ACGCTTCCTC
Statistics
Matches: 98, Mismatches: 9, Indels: 9
0.84 0.08 0.08
Matches are distributed among these distances:
25 22 0.22
26 12 0.12
27 48 0.49
28 16 0.16
ACGTcount: A:0.36, C:0.23, G:0.25, T:0.17
Consensus pattern (26 bp):
CCAGATCAGATATTGTGGCAGAGCCA
Found at i:101432083 original size:52 final size:55
Alignment explanation
Indices: 101431967--101432104 Score: 194
Period size: 52 Copynumber: 2.6 Consensus size: 55
101431957 AGCATGGCTG
* *
101431967 CCAGAACAGATA-ATGTGACAGAGTCACCAGATACAGATAATCGTGGCAGAGCCA
1 CCAGAACAGATATATGTGGCAGAGCCACCAGATACAGATAATCGTGGCAGAGCCA
*
101432021 CCAGAACAGATATATGTGGCAGAGCCACCAGAT-CAGAT-ATTG-GGCAGAGCCA
1 CCAGAACAGATATATGTGGCAGAGCCACCAGATACAGATAATCGTGGCAGAGCCA
* * *
101432073 CCAGATCAGATATTTGTGGCATAGCCACCAGA
1 CCAGAACAGATATATGTGGCAGAGCCACCAGA
101432105 ACGCTTCCTC
Statistics
Matches: 77, Mismatches: 6, Indels: 4
0.89 0.07 0.05
Matches are distributed among these distances:
52 39 0.51
53 3 0.04
54 17 0.22
55 18 0.23
ACGTcount: A:0.36, C:0.23, G:0.25, T:0.17
Consensus pattern (55 bp):
CCAGAACAGATATATGTGGCAGAGCCACCAGATACAGATAATCGTGGCAGAGCCA
Found at i:101433755 original size:26 final size:26
Alignment explanation
Indices: 101433718--101433770 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
101433708 CATGAAATTC
* * *
101433718 TTATCATGAAACATTTTCCTAACCCA
1 TTATCATAAAACACTTACCTAACCCA
101433744 TTATCATAAAACACTTACCTAACCCA
1 TTATCATAAAACACTTACCTAACCCA
101433770 T
1 T
101433771 CATGGAACAT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.38, C:0.28, G:0.02, T:0.32
Consensus pattern (26 bp):
TTATCATAAAACACTTACCTAACCCA
Found at i:101439176 original size:20 final size:19
Alignment explanation
Indices: 101439151--101439195 Score: 54
Period size: 19 Copynumber: 2.3 Consensus size: 19
101439141 TGATTCTAAC
*
101439151 TAATTTTGAATAGTTTCATT
1 TAATTTTCAAT-GTTTCATT
* *
101439171 TAATTTTCAATTTTTCTTT
1 TAATTTTCAATGTTTCATT
101439190 TAATTT
1 TAATTT
101439196 GAACTTAGTA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
19 12 0.55
20 10 0.45
ACGTcount: A:0.27, C:0.07, G:0.04, T:0.62
Consensus pattern (19 bp):
TAATTTTCAATGTTTCATT
Found at i:101441692 original size:67 final size:67
Alignment explanation
Indices: 101441609--101441743 Score: 243
Period size: 67 Copynumber: 2.0 Consensus size: 67
101441599 GTTTATTTCA
* *
101441609 ATTGAGATTGAGATTATGAATAACATAAGTGGCTAGCTCCCTTAGGGGGTATTAACGAATGGATG
1 ATTGAGATTGAGATTATGAATAACATAAGTGGCTAACTCCCTTAGGGGATATTAACGAATGGATG
101441674 GG
66 GG
*
101441676 ATTGAGATTGAGATTATGAATAACATAAGTGGCTAACTCTCTTAGGGGATATTAACGAATGGATG
1 ATTGAGATTGAGATTATGAATAACATAAGTGGCTAACTCCCTTAGGGGATATTAACGAATGGATG
101441741 GG
66 GG
101441743 A
1 A
101441744 ACGTGATTAA
Statistics
Matches: 65, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
67 65 1.00
ACGTcount: A:0.33, C:0.10, G:0.28, T:0.29
Consensus pattern (67 bp):
ATTGAGATTGAGATTATGAATAACATAAGTGGCTAACTCCCTTAGGGGATATTAACGAATGGATG
GG
Found at i:101443633 original size:21 final size:21
Alignment explanation
Indices: 101443607--101443667 Score: 68
Period size: 21 Copynumber: 2.8 Consensus size: 21
101443597 CGACAGATAA
101443607 GTGCCTAAAACGACACACAAG
1 GTGCCTAAAACGACACACAAG
* * **
101443628 GTGCCTGATACGACACATGAG
1 GTGCCTAAAACGACACACAAG
101443649 GTGCCTAAAATACGACACA
1 GTGCCT-AAA-ACGACACA
101443668 TAAAGTGTCT
Statistics
Matches: 32, Mismatches: 6, Indels: 2
0.80 0.15 0.05
Matches are distributed among these distances:
21 23 0.72
22 1 0.03
23 8 0.25
ACGTcount: A:0.38, C:0.26, G:0.21, T:0.15
Consensus pattern (21 bp):
GTGCCTAAAACGACACACAAG
Found at i:101443680 original size:44 final size:41
Alignment explanation
Indices: 101443594--101443681 Score: 104
Period size: 44 Copynumber: 2.1 Consensus size: 41
101443584 CCTGAGCAGT
* *
101443594 ATACGACAGATAAGTGCCTAAAACGACACACAAGGTGCCTG
1 ATACGACACATAAGTGCCTAAAACGACACACAAAGTGCCTG
* * *
101443635 ATACGACACATGAGGTGCCTAAAATACGACACATAAAGTGTCTG
1 ATACGACACAT-AAGTGCCT-AAA-ACGACACACAAAGTGCCTG
101443679 ATA
1 ATA
101443682 TATGACACAT
Statistics
Matches: 39, Mismatches: 5, Indels: 3
0.83 0.11 0.06
Matches are distributed among these distances:
41 10 0.26
42 7 0.18
43 3 0.08
44 19 0.49
ACGTcount: A:0.40, C:0.22, G:0.20, T:0.18
Consensus pattern (41 bp):
ATACGACACATAAGTGCCTAAAACGACACACAAAGTGCCTG
Found at i:101444585 original size:17 final size:17
Alignment explanation
Indices: 101444551--101444588 Score: 51
Period size: 17 Copynumber: 2.2 Consensus size: 17
101444541 ACTGAATTTC
101444551 AATTCAATTTATACCCT
1 AATTCAATTTATACCCT
*
101444568 AATTCCAATTTA-ATCCT
1 AATT-CAATTTATACCCT
101444585 AATT
1 AATT
101444589 AACTCATTTA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
17 12 0.63
18 7 0.37
ACGTcount: A:0.37, C:0.21, G:0.00, T:0.42
Consensus pattern (17 bp):
AATTCAATTTATACCCT
Found at i:101445034 original size:14 final size:15
Alignment explanation
Indices: 101445010--101445038 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
101445000 GAATGGCTTC
101445010 GGCTATTCTTTCTTT
1 GGCTATTCTTTCTTT
101445025 GGCT-TTCTTTCTTT
1 GGCTATTCTTTCTTT
101445039 ATTTCATTTC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 10 0.71
15 4 0.29
ACGTcount: A:0.03, C:0.21, G:0.14, T:0.62
Consensus pattern (15 bp):
GGCTATTCTTTCTTT
Found at i:101445088 original size:9 final size:9
Alignment explanation
Indices: 101445074--101445098 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
101445064 ATATATTAGT
101445074 TAATAATGA
1 TAATAATGA
101445083 TAATAATGA
1 TAATAATGA
101445092 TAATAAT
1 TAATAAT
101445099 AATTATAATA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.56, C:0.00, G:0.08, T:0.36
Consensus pattern (9 bp):
TAATAATGA
Found at i:101453449 original size:12 final size:13
Alignment explanation
Indices: 101453425--101453455 Score: 55
Period size: 12 Copynumber: 2.5 Consensus size: 13
101453415 TACAAATGTA
101453425 TCATTTCCCATTT
1 TCATTTCCCATTT
101453438 TCATTT-CCATTT
1 TCATTTCCCATTT
101453450 TCATTT
1 TCATTT
101453456 TAAGAAACCT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
12 12 0.67
13 6 0.33
ACGTcount: A:0.16, C:0.26, G:0.00, T:0.58
Consensus pattern (13 bp):
TCATTTCCCATTT
Found at i:101455378 original size:18 final size:20
Alignment explanation
Indices: 101455343--101455381 Score: 55
Period size: 18 Copynumber: 2.0 Consensus size: 20
101455333 ATAAATTATA
101455343 ATTAAATATAGATTATATATT
1 ATTAAATATAGA-TATATATT
101455364 ATTAAAT-TAGA-ATATATT
1 ATTAAATATAGATATATATT
101455382 TAAATGTAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
18 7 0.39
20 4 0.22
21 7 0.39
ACGTcount: A:0.49, C:0.00, G:0.05, T:0.46
Consensus pattern (20 bp):
ATTAAATATAGATATATATT
Found at i:101459431 original size:13 final size:13
Alignment explanation
Indices: 101459413--101459443 Score: 62
Period size: 13 Copynumber: 2.4 Consensus size: 13
101459403 GTCATGATAT
101459413 ATAACACATATCA
1 ATAACACATATCA
101459426 ATAACACATATCA
1 ATAACACATATCA
101459439 ATAAC
1 ATAAC
101459444 TTACTTACCT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.55, C:0.23, G:0.00, T:0.23
Consensus pattern (13 bp):
ATAACACATATCA
Found at i:101461204 original size:33 final size:33
Alignment explanation
Indices: 101461166--101461233 Score: 127
Period size: 33 Copynumber: 2.1 Consensus size: 33
101461156 TTCACTACAG
*
101461166 ATAGAGATACCTACGATCTATTTCTCTTACTTC
1 ATAGAGATACATACGATCTATTTCTCTTACTTC
101461199 ATAGAGATACATACGATCTATTTCTCTTACTTC
1 ATAGAGATACATACGATCTATTTCTCTTACTTC
101461232 AT
1 AT
101461234 TGTTTTCATT
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 34 1.00
ACGTcount: A:0.29, C:0.22, G:0.09, T:0.40
Consensus pattern (33 bp):
ATAGAGATACATACGATCTATTTCTCTTACTTC
Found at i:101464277 original size:26 final size:25
Alignment explanation
Indices: 101464255--101464359 Score: 71
Period size: 23 Copynumber: 4.3 Consensus size: 25
101464245 GTCATGATCG
101464255 GTAAGCTCCTACTGAGCTGATGAACA
1 GTAAGCT-CTACTGAGCTGATGAACA
* *
101464281 GTATGCTCTATTGAGCTGA--AACA
1 GTAAGCTCTACTGAGCTGATGAACA
* **
101464304 GTAAACTCTAAAGAGC---TGAACA
1 GTAAGCTCTACTGAGCTGATGAACA
*
101464326 GTAAGCTCTTAC-GATCTGAT-ATATCA
1 GTAAGCTC-TACTGAGCTGATGA-A-CA
101464352 GTAAGCTC
1 GTAAGCTC
101464360 ATACAAGCTT
Statistics
Matches: 62, Mismatches: 9, Indels: 16
0.71 0.10 0.18
Matches are distributed among these distances:
22 14 0.23
23 18 0.29
24 1 0.02
25 13 0.21
26 16 0.26
ACGTcount: A:0.33, C:0.20, G:0.20, T:0.27
Consensus pattern (25 bp):
GTAAGCTCTACTGAGCTGATGAACA
Done.