Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A06
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 115140250
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2234201 characters in sequence are not A, C, G, or T
File 30 of 345
Found at i:8593056 original size:7 final size:7
Alignment explanation
Indices: 8593044--8593076 Score: 66
Period size: 7 Copynumber: 4.7 Consensus size: 7
8593034 TTAAATAAAA
8593044 AAATACT
1 AAATACT
8593051 AAATACT
1 AAATACT
8593058 AAATACT
1 AAATACT
8593065 AAATACT
1 AAATACT
8593072 AAATA
1 AAATA
8593077 TGAATCCATT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 26 1.00
ACGTcount: A:0.61, C:0.12, G:0.00, T:0.27
Consensus pattern (7 bp):
AAATACT
Found at i:8594267 original size:20 final size:20
Alignment explanation
Indices: 8594244--8594284 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 20
8594234 TTTGAGGGGA
8594244 ATTTAAGAGAAATTTGAGAG
1 ATTTAAGAGAAATTTGAGAG
* *
8594264 ATTTGAGAGGAATTTGAGAG
1 ATTTAAGAGAAATTTGAGAG
8594284 A
1 A
8594285 ATATTGAAAG
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.41, C:0.00, G:0.29, T:0.29
Consensus pattern (20 bp):
ATTTAAGAGAAATTTGAGAG
Found at i:8594291 original size:11 final size:10
Alignment explanation
Indices: 8594242--8594291 Score: 57
Period size: 11 Copynumber: 4.8 Consensus size: 10
8594232 GTTTTGAGGG
*
8594242 GAATTTAAGA
1 GAATTTGAGA
8594252 GAAATTTGAGA
1 G-AATTTGAGA
8594263 G-ATTTGAGA
1 GAATTTGAGA
8594272 GGAATTTGAGA
1 -GAATTTGAGA
8594283 GAATATTGA
1 GAAT-TTGA
8594292 AAGATATAAG
Statistics
Matches: 35, Mismatches: 1, Indels: 7
0.81 0.02 0.16
Matches are distributed among these distances:
9 8 0.23
10 6 0.17
11 21 0.60
ACGTcount: A:0.42, C:0.00, G:0.28, T:0.30
Consensus pattern (10 bp):
GAATTTGAGA
Found at i:8600058 original size:20 final size:18
Alignment explanation
Indices: 8600011--8600059 Score: 57
Period size: 20 Copynumber: 2.7 Consensus size: 18
8600001 CCAGATAAAC
8600011 ATTAAATTAA-ATTTAAT
1 ATTAAATTAATATTTAAT
8600028 ATTAAGA-TAATCATTTTAAT
1 ATTAA-ATTAAT-A-TTTAAT
8600048 ATTAAATTAATA
1 ATTAAATTAATA
8600060 AAATGCTATT
Statistics
Matches: 27, Mismatches: 0, Indels: 8
0.77 0.00 0.23
Matches are distributed among these distances:
17 8 0.30
18 1 0.04
19 3 0.11
20 15 0.56
ACGTcount: A:0.51, C:0.02, G:0.02, T:0.45
Consensus pattern (18 bp):
ATTAAATTAATATTTAAT
Found at i:8600119 original size:25 final size:25
Alignment explanation
Indices: 8600043--8600120 Score: 72
Period size: 25 Copynumber: 3.2 Consensus size: 25
8600033 GATAATCATT
* * **
8600043 TTAATATTAAATTAATAAAATGCTA
1 TTAATATTAAACTATTAAAATAATA
* *
8600068 TTAATA-T-AAGTATTAAATTAA-A
1 TTAATATTAAACTATTAAAATAATA
8600090 TTTAATATTAAACTATTAAAATAATA
1 -TTAATATTAAACTATTAAAATAATA
8600116 TTAAT
1 TTAAT
8600121 TTTGGAATAG
Statistics
Matches: 42, Mismatches: 7, Indels: 8
0.74 0.12 0.14
Matches are distributed among these distances:
22 1 0.02
23 15 0.36
24 2 0.05
25 23 0.55
26 1 0.02
ACGTcount: A:0.53, C:0.03, G:0.03, T:0.42
Consensus pattern (25 bp):
TTAATATTAAACTATTAAAATAATA
Found at i:8605323 original size:53 final size:53
Alignment explanation
Indices: 8605198--8605340 Score: 198
Period size: 53 Copynumber: 2.7 Consensus size: 53
8605188 TCACATATCA
* * * ** *
8605198 TACCGATGCCATATCCCAGATATGGTCTTATATAGAATCACATTATCATATTG
1 TACCGATGCCATAGCCCAGCTATAGTCTTATACGGAATCACATTATCACATTG
*
8605251 TACTGATGCCATAGCCCAGCTATAGTCTTATACGGAATCACATTATCACATTG
1 TACCGATGCCATAGCCCAGCTATAGTCTTATACGGAATCACATTATCACATTG
*
8605304 TACCGATGCCATAGCCCAGCTATCA-TATTATACGGAA
1 TACCGATGCCATAGCCCAGCTAT-AGTCTTATACGGAA
8605341 GTACATATCA
Statistics
Matches: 80, Mismatches: 9, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
53 79 0.99
54 1 0.01
ACGTcount: A:0.31, C:0.24, G:0.15, T:0.30
Consensus pattern (53 bp):
TACCGATGCCATAGCCCAGCTATAGTCTTATACGGAATCACATTATCACATTG
Found at i:8616561 original size:23 final size:24
Alignment explanation
Indices: 8616535--8616581 Score: 60
Period size: 25 Copynumber: 2.0 Consensus size: 24
8616525 TTAAAGAGTA
8616535 AATTAGTCTTT-TGTTAAAAATTT
1 AATTAGTCTTTATGTTAAAAATTT
* *
8616558 AATTATTTTTTACTGTTAAAAATT
1 AATTAGTCTTTA-TGTTAAAAATT
8616582 GGTCCATGTA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
23 9 0.45
25 11 0.55
ACGTcount: A:0.36, C:0.04, G:0.06, T:0.53
Consensus pattern (24 bp):
AATTAGTCTTTATGTTAAAAATTT
Found at i:8619091 original size:17 final size:18
Alignment explanation
Indices: 8619066--8619099 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
8619056 ATACAATTCC
8619066 CAAAATAATAG-AAATTA
1 CAAAATAATAGTAAATTA
*
8619083 CAAATTAATAGTAAATT
1 CAAAATAATAGTAAATT
8619100 TAAAATACTT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 10 0.67
18 5 0.33
ACGTcount: A:0.59, C:0.06, G:0.06, T:0.29
Consensus pattern (18 bp):
CAAAATAATAGTAAATTA
Found at i:8619947 original size:95 final size:96
Alignment explanation
Indices: 8619497--8619983 Score: 484
Period size: 95 Copynumber: 5.1 Consensus size: 96
8619487 TCACTGATTG
* * * * * * *
8619497 TTGCAGATGAACCACTAACGATAAAAATATTGGTGTATGAACTA-TCTATTGGTGCAGATAAAAG
1 TTGCAGATAAACTACTAATGATAAGAATATTGGTGGATGAACCATTC-ATCGGTGCAGATAAAAG
* * * *
8619561 CTGCTAGTACATTGTGGATGAACCACTGGTTA
65 CTACTAGTACGTTGTGGATGAACCACTAGTCA
* * *
8619593 TTGCAGATGAACTGCTAATGATAAGAATATTGGTGGATGAACCA-TCTATCGATGCAGATAAAAG
1 TTGCAGATAAACTACTAATGATAAGAATATTGGTGGATGAACCATTC-ATCGGTGCAGATAAAAG
* * * *
8619657 CTGC-AATATGTTGTGGATGAACCA-TTGATCA
65 CTACTAGTACGTTGTGGATGAACCACTAG-TCA
* * * * * *
8619688 TTGCAGATGAACTATTAATGCTAAGAATA-TGGTGGATGAACTATTCATCAGTGTAGATAAAAGC
1 TTGCAGATAAACTACTAATGATAAGAATATTGGTGGATGAACCATTCATCGGTGCAGATAAAAGC
* * * * *
8619752 TGCTAGTATGTTGTGGATGAACCAATGGCCA
66 TACTAGTACGTTGTGGATGAACCACTAGTCA
** * *
8619783 TTGCAGATAAACTACTAATGATAAGAATATTGGCAGATGAACCATTCCTCGGTGCAGATAAAAGA
1 TTGCAGATAAACTACTAATGATAAGAATATTGGTGGATGAACCATTCATCGGTGCAGATAAAAGC
* * *
8619848 TATTAGTACGTTGTGGATAAATCACTAGTCA
66 TACTAGTACGTTGTGGATGAACCACTAGTCA
* * * * * *
8619879 -TGCAGATAAACTACTAACGATAAGAATATAGGTGGATAAACCATTCGTCGGTACAGATAAAAGA
1 TTGCAGATAAACTACTAATGATAAGAATATTGGTGGATGAACCATTCATCGGTGCAGATAAAAGC
* * * *
8619943 TATTAGTACGTTCTGGATAAATCACTAGTCA
66 TACTAGTACGTTGTGGATGAACCACTAGTCA
8619974 -TGCAGATAAA
1 TTGCAGATAAA
8619984 TTGCTGACTA
Statistics
Matches: 337, Mismatches: 49, Indels: 11
0.85 0.12 0.03
Matches are distributed among these distances:
94 33 0.10
95 191 0.57
96 113 0.34
ACGTcount: A:0.36, C:0.14, G:0.22, T:0.28
Consensus pattern (96 bp):
TTGCAGATAAACTACTAATGATAAGAATATTGGTGGATGAACCATTCATCGGTGCAGATAAAAGC
TACTAGTACGTTGTGGATGAACCACTAGTCA
Found at i:8619983 original size:44 final size:44
Alignment explanation
Indices: 8619835--8619983 Score: 122
Period size: 50 Copynumber: 3.2 Consensus size: 44
8619825 CATTCCTCGG
8619835 TGCAGATAAAAGATATTAGTACGTTGTGGATAAATCACTAGTCA
1 TGCAGATAAAAGATATTAGTACGTTGTGGATAAATCACTAGTCA
* * * * * * *
8619879 TGCAGAT-AAA-CTACTAACGATAAGAATATAGGTGGATAAACCATTCGTCGG
1 TGCAGATAAAAGATA-TTA-G-TACG--T-T--GTGGATAAATCACTAGTC-A
* *
8619930 TACAGATAAAAGATATTAGTACGTTCTGGATAAATCACTAGTCA
1 TGCAGATAAAAGATATTAGTACGTTGTGGATAAATCACTAGTCA
8619974 TGCAGATAAA
1 TGCAGATAAA
8619984 TTGCTGACTA
Statistics
Matches: 77, Mismatches: 17, Indels: 22
0.66 0.15 0.19
Matches are distributed among these distances:
42 2 0.03
43 5 0.06
44 17 0.22
45 17 0.22
47 2 0.03
48 2 0.03
50 18 0.23
51 7 0.09
52 5 0.06
53 2 0.03
ACGTcount: A:0.40, C:0.13, G:0.19, T:0.27
Consensus pattern (44 bp):
TGCAGATAAAAGATATTAGTACGTTGTGGATAAATCACTAGTCA
Found at i:8634318 original size:18 final size:18
Alignment explanation
Indices: 8634295--8634362 Score: 68
Period size: 18 Copynumber: 3.8 Consensus size: 18
8634285 AGAACGTGTC
*
8634295 ATTCATTTTCAAAACATT
1 ATTCATTTTCAAAACGTT
*
8634313 ATTCATTATCACAAA-GTT
1 ATTCATTTTCA-AAACGTT
*
8634331 ATAC-TCTTTCAAAACGTT
1 ATTCAT-TTTCAAAACGTT
*
8634349 ATTAATTTTCAAAA
1 ATTCATTTTCAAAA
8634363 TGTCACTTAT
Statistics
Matches: 40, Mismatches: 6, Indels: 8
0.74 0.11 0.15
Matches are distributed among these distances:
17 4 0.10
18 32 0.80
19 4 0.10
ACGTcount: A:0.40, C:0.16, G:0.03, T:0.41
Consensus pattern (18 bp):
ATTCATTTTCAAAACGTT
Found at i:8639448 original size:16 final size:15
Alignment explanation
Indices: 8639425--8639457 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
8639415 GAAATATTTT
8639425 AAATATA-AATACAA
1 AAATATATAATACAA
*
8639439 AAATATATAATACTA
1 AAATATATAATACAA
8639454 AAAT
1 AAAT
8639458 TTACTACACT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
14 7 0.41
15 10 0.59
ACGTcount: A:0.67, C:0.06, G:0.00, T:0.27
Consensus pattern (15 bp):
AAATATATAATACAA
Found at i:8640300 original size:13 final size:14
Alignment explanation
Indices: 8640282--8640310 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
8640272 ATATTTAGTC
8640282 ATATAATAAAT-TA
1 ATATAATAAATATA
8640295 ATATAATAAATATA
1 ATATAATAAATATA
8640309 AT
1 AT
8640311 TTATTATTTT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 11 0.73
14 4 0.27
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (14 bp):
ATATAATAAATATA
Found at i:8640891 original size:15 final size:15
Alignment explanation
Indices: 8640852--8640889 Score: 55
Period size: 14 Copynumber: 2.7 Consensus size: 15
8640842 TAAAAAAAGT
8640852 AAATTA-TTTTCTAG
1 AAATTATTTTTCTAG
8640866 AAATTATTTTTC-AG
1 AAATTATTTTTCTAG
8640880 AAA-TATTTTT
1 AAATTATTTTT
8640890 TTTGTCAGAA
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
13 7 0.30
14 11 0.48
15 5 0.22
ACGTcount: A:0.37, C:0.05, G:0.05, T:0.53
Consensus pattern (15 bp):
AAATTATTTTTCTAG
Found at i:8645431 original size:31 final size:29
Alignment explanation
Indices: 8645360--8645431 Score: 71
Period size: 28 Copynumber: 2.5 Consensus size: 29
8645350 TTTGTTTATA
*
8645360 CTTAT-TATGTAAATTTTATATATATATG
1 CTTATATATGTATATTTTATATATATATG
*
8645388 CTT-CATAT-TATATTATTAT-TATATAATTG
1 CTTATATATGTATATT-TTATATATAT-A-TG
8645417 CTTATATATGTATAT
1 CTTATATATGTATAT
8645432 AGGTATATGT
Statistics
Matches: 35, Mismatches: 3, Indels: 9
0.74 0.06 0.19
Matches are distributed among these distances:
27 10 0.29
28 11 0.31
29 5 0.14
30 4 0.11
31 5 0.14
ACGTcount: A:0.35, C:0.06, G:0.06, T:0.54
Consensus pattern (29 bp):
CTTATATATGTATATTTTATATATATATG
Found at i:8658203 original size:46 final size:43
Alignment explanation
Indices: 8658136--8658548 Score: 276
Period size: 44 Copynumber: 9.5 Consensus size: 43
8658126 TTAATACAGG
* *
8658136 TCTTATCTCCCTGAGATTACAGTGGAACAGACCAAAGAATTTCAGA
1 TCTTATCTCCCTGAGATTACAGTGGAGCAGATCAAAG-A--TCAGA
* * ** *
8658182 TCTTATCTCCCTGAGGTTACAGCGGAGCAGATTGAAGCCA-GAGA
1 TCTTATCTCCCTGAGATTACAGTGGAGCAGATCAAAG--ATCAGA
*
8658226 TCTTATCTCCCTGAGATTACAGCGGAGCAGATCAAAGAT-AGTAA
1 TCTTATCTCCCTGAGATTACAGTGGAGCAGATCAAAGATCAG--A
* * * *
8658270 TCCTATCT-CCTGGAGATTACAATGGAGCGGATTAAAG----GA
1 TCTTATCTCCCT-GAGATTACAGTGGAGCAGATCAAAGATCAGA
* * * * *
8658309 TCTTATCTCTCTGA-AGTTACAGTAGAGAAGATC--ACATCAGG
1 TCTTATCTCCCTGAGA-TTACAGTGGAGCAGATCAAAGATCAGA
* * *
8658350 TCTTATTTCCCTGAGATTACAGTGGAACAGACCAAAGAATTTCAGA
1 TCTTATCTCCCTGAGATTACAGTGGAGCAGATCAAAG-A--TCAGA
* ** *
8658396 TCTTATCTCCCTGAGGTTACAGTGGAGCAGATTGAAG-CCAGAAA
1 TCTTATCTCCCTGAGATTACAGTGGAGCAGATCAAAGATCAG--A
* * * *
8658440 TCTTATCTCCCTGAGATTACAGCGGAGCAAATCGAAGA-CACTA
1 TCTTATCTCCCTGAGATTACAGTGGAGCAGATCAAAGATCA-GA
* * * *
8658483 TCCTATCTCCCTGAGATTACAGTGGAGCGGATTAAA-ATAAAGGA
1 TCTTATCTCCCTGAGATTACAGTGGAGCAGATCAAAGAT-CA-GA
* *
8658527 TCTTATCTCTCTGAGGTTACAG
1 TCTTATCTCCCTGAGATTACAG
8658549 CAGAGTAGAT
Statistics
Matches: 287, Mismatches: 57, Indels: 48
0.73 0.15 0.12
Matches are distributed among these distances:
37 1 0.00
38 1 0.00
39 22 0.08
40 2 0.01
41 27 0.09
42 8 0.03
43 35 0.12
44 124 0.43
46 66 0.23
47 1 0.00
ACGTcount: A:0.31, C:0.21, G:0.21, T:0.26
Consensus pattern (43 bp):
TCTTATCTCCCTGAGATTACAGTGGAGCAGATCAAAGATCAGA
Found at i:8658664 original size:218 final size:214
Alignment explanation
Indices: 8658135--8658581 Score: 583
Period size: 214 Copynumber: 2.1 Consensus size: 214
8658125 ATTAATACAG
* *** * *
8658135 GTCTTATCTCCCTGAGATTACAGTGGAACAGACCAAAGAATTTCAGATCTTATCTCCCTGAGGTT
1 GTCTTATTTCCCTGAGATTACAGTGGAACAGACCAAAGAACAACAGATCTTATCTCCCTAAAGTT
* * * * * *
8658200 ACAGCGGAGCAGATTGAAGCCAGAGATCTTATCTCCCTGAGATTACAGCGGAGCAGATCAAAGAT
66 ACAGTGGAGCAAATAGAAGCCAGAAATCTTATCTCCCTGAGATTACAGCGGAGCAAATCAAAGAC
*
8658265 AGTAATCCTATCTCCTGGAGATTACAATGGAGCGGATTAAAGGATCTTATCTCTCTGAAGTTACA
131 ACTAATCCTATCTCCTGGAGATTACAATGGAGCGGATTAAAGGATCTTATCTCTCTGAAGTTACA
* *
8658330 GTAGAGAAGATCACATCAG
196 GCAGAGAAGATCACATCAA
*** * *
8658349 GTCTTATTTCCCTGAGATTACAGTGGAACAGACCAAAGAATTTCAGATCTTATCTCCCTGAGGTT
1 GTCTTATTTCCCTGAGATTACAGTGGAACAGACCAAAGAACAACAGATCTTATCTCCCTAAAGTT
* * *
8658414 ACAGTGGAGCAGATTGAAGCCAGAAATCTTATCTCCCTGAGATTACAGCGGAGCAAATCGAAGAC
66 ACAGTGGAGCAAATAGAAGCCAGAAATCTTATCTCCCTGAGATTACAGCGGAGCAAATCAAAGAC
* *
8658479 ACT-ATCCTATCTCCCT-GAGATTACAGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAG
131 ACTAATCCTATCT-CCTGGAGATTACAATGGAGCGGA-T----TAAAGGATCTTATCTCTCTGAA
* *
8658542 GTTACAGCAGAGTAGATCGCATCAA
190 GTTACAGCAGAGAAGATCACATCAA
8658567 GTCTTATTTCCCTGA
1 GTCTTATTTCCCTGA
8658582 AGATGCAGTG
Statistics
Matches: 214, Mismatches: 13, Indels: 8
0.91 0.06 0.03
Matches are distributed among these distances:
213 27 0.13
214 130 0.61
218 57 0.27
ACGTcount: A:0.31, C:0.21, G:0.21, T:0.27
Consensus pattern (214 bp):
GTCTTATTTCCCTGAGATTACAGTGGAACAGACCAAAGAACAACAGATCTTATCTCCCTAAAGTT
ACAGTGGAGCAAATAGAAGCCAGAAATCTTATCTCCCTGAGATTACAGCGGAGCAAATCAAAGAC
ACTAATCCTATCTCCTGGAGATTACAATGGAGCGGATTAAAGGATCTTATCTCTCTGAAGTTACA
GCAGAGAAGATCACATCAA
Found at i:8660140 original size:31 final size:29
Alignment explanation
Indices: 8660069--8660140 Score: 71
Period size: 28 Copynumber: 2.5 Consensus size: 29
8660059 TTTGTTTATA
*
8660069 CTTAT-TATGTAAATTTTATATATATATG
1 CTTATATATGTATATTTTATATATATATG
*
8660097 CTT-CATAT-TATATTATTAT-TATATAATTG
1 CTTATATATGTATATT-TTATATATAT-A-TG
8660126 CTTATATATGTATAT
1 CTTATATATGTATAT
8660141 AGGTATATGT
Statistics
Matches: 35, Mismatches: 3, Indels: 9
0.74 0.06 0.19
Matches are distributed among these distances:
27 10 0.29
28 11 0.31
29 5 0.14
30 4 0.11
31 5 0.14
ACGTcount: A:0.35, C:0.06, G:0.06, T:0.54
Consensus pattern (29 bp):
CTTATATATGTATATTTTATATATATATG
Found at i:8663174 original size:20 final size:21
Alignment explanation
Indices: 8663149--8663198 Score: 66
Period size: 21 Copynumber: 2.4 Consensus size: 21
8663139 ATAAAAGTTA
8663149 TAAAAATTA-TTAAATTTTAG
1 TAAAAATTATTTAAATTTTAG
* * *
8663169 TAAAAAATATTTAATTTTTAT
1 TAAAAATTATTTAAATTTTAG
8663190 TAAAAATTA
1 TAAAAATTA
8663199 GAAAAAAATT
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
20 8 0.32
21 17 0.68
ACGTcount: A:0.52, C:0.00, G:0.02, T:0.46
Consensus pattern (21 bp):
TAAAAATTATTTAAATTTTAG
Found at i:8663249 original size:20 final size:20
Alignment explanation
Indices: 8663221--8663350 Score: 56
Period size: 20 Copynumber: 6.7 Consensus size: 20
8663211 AAAAATCATT
*
8663221 AATTTTAAAAATTGTAAAAA
1 AATTATAAAAATTGTAAAAA
* * *
8663241 AATTAT-AAAA-TATATAGA
1 AATTATAAAAATTGTAAAAA
* *
8663259 AA-TATAGAAAAATGT-ATAA
1 AATTATA-AAAATTGTAAAAA
* * ** *
8663278 AATTTTATAAAGTCATAAGAA
1 AATTATA-AAAATTGTAAAAA
* *
8663299 AATTATAAAAAATGTAAAGA
1 AATTATAAAAATTGTAAAAA
*
8663319 AA-TAT-AAAATTCGTAAAAG
1 AATTATAAAAATT-GTAAAAA
*
8663338 AATTATTAAAATT
1 AATTATAAAAATT
8663351 ATCATACCAA
Statistics
Matches: 77, Mismatches: 25, Indels: 15
0.66 0.21 0.13
Matches are distributed among these distances:
17 3 0.04
18 12 0.16
19 21 0.27
20 26 0.34
21 15 0.19
ACGTcount: A:0.59, C:0.02, G:0.08, T:0.32
Consensus pattern (20 bp):
AATTATAAAAATTGTAAAAA
Found at i:8665927 original size:15 final size:15
Alignment explanation
Indices: 8665897--8665925 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
8665887 ACTATTAGTA
8665897 ATTTTTTAAATATTT
1 ATTTTTTAAATATTT
8665912 ATTTTTT-AATATTT
1 ATTTTTTAAATATTT
8665926 TACCATACTC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 7 0.50
15 7 0.50
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (15 bp):
ATTTTTTAAATATTT
Found at i:8672868 original size:32 final size:32
Alignment explanation
Indices: 8672840--8672902 Score: 126
Period size: 32 Copynumber: 2.0 Consensus size: 32
8672830 ATTCAATTGG
8672840 AAACTTATCTTTCTATCCATTATATCAATCGC
1 AAACTTATCTTTCTATCCATTATATCAATCGC
8672872 AAACTTATCTTTCTATCCATTATATCAATCG
1 AAACTTATCTTTCTATCCATTATATCAATCG
8672903 GTTTATTTGA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 31 1.00
ACGTcount: A:0.32, C:0.24, G:0.03, T:0.41
Consensus pattern (32 bp):
AAACTTATCTTTCTATCCATTATATCAATCGC
Found at i:8677196 original size:18 final size:19
Alignment explanation
Indices: 8677175--8677214 Score: 55
Period size: 18 Copynumber: 2.2 Consensus size: 19
8677165 TATAATAAAG
* *
8677175 ATAATAATATACAT-ATAT
1 ATAAAAATACACATAATAT
8677193 ATAAAAATACACATAATAT
1 ATAAAAATACACATAATAT
8677212 ATA
1 ATA
8677215 CGTATGTAAC
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
18 12 0.63
19 7 0.37
ACGTcount: A:0.60, C:0.07, G:0.00, T:0.33
Consensus pattern (19 bp):
ATAAAAATACACATAATAT
Found at i:8677370 original size:14 final size:15
Alignment explanation
Indices: 8677346--8677379 Score: 52
Period size: 14 Copynumber: 2.3 Consensus size: 15
8677336 AACATAACAA
*
8677346 AAATACTATATATAT
1 AAATACTATATACAT
8677361 AAAT-CTATATACAT
1 AAATACTATATACAT
8677375 AAATA
1 AAATA
8677380 AAAGTTTACA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
14 13 0.76
15 4 0.24
ACGTcount: A:0.56, C:0.09, G:0.00, T:0.35
Consensus pattern (15 bp):
AAATACTATATACAT
Found at i:8677514 original size:14 final size:13
Alignment explanation
Indices: 8677495--8677531 Score: 56
Period size: 14 Copynumber: 2.7 Consensus size: 13
8677485 TATATGTAAA
8677495 ATATATATAAATAC
1 ATATATATAAA-AC
8677509 ATATATACTAAAAC
1 ATATATA-TAAAAC
8677523 ATATATATA
1 ATATATATA
8677532 TATGATAATG
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
13 2 0.09
14 16 0.73
15 4 0.18
ACGTcount: A:0.57, C:0.08, G:0.00, T:0.35
Consensus pattern (13 bp):
ATATATATAAAAC
Found at i:8677550 original size:3 final size:3
Alignment explanation
Indices: 8677536--8677592 Score: 62
Period size: 3 Copynumber: 19.3 Consensus size: 3
8677526 TATATATATG
* * * *
8677536 ATA ATG ATA ATA ATA ATA ATG ATA ATA ATA GTA ATA ATA CTA ATA AT-
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
*
8677583 ATA AAA ATA A
1 ATA ATA ATA A
8677593 CAAGAATATT
Statistics
Matches: 43, Mismatches: 10, Indels: 2
0.78 0.18 0.04
Matches are distributed among these distances:
2 2 0.05
3 41 0.95
ACGTcount: A:0.61, C:0.02, G:0.05, T:0.32
Consensus pattern (3 bp):
ATA
Found at i:8679470 original size:14 final size:14
Alignment explanation
Indices: 8679451--8679480 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
8679441 AGTATAAATT
8679451 AAACAGAATTTGAA
1 AAACAGAATTTGAA
8679465 AAACAGAATTTGAA
1 AAACAGAATTTGAA
8679479 AA
1 AA
8679481 TACCTCGACA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.60, C:0.07, G:0.13, T:0.20
Consensus pattern (14 bp):
AAACAGAATTTGAA
Found at i:8679676 original size:73 final size:71
Alignment explanation
Indices: 8679553--8679856 Score: 302
Period size: 73 Copynumber: 4.2 Consensus size: 71
8679543 ATATAAATTA
* ** *
8679553 AAACAAAAATTGAAAACT-CCTCAGCATGTGAACCAATGCTCAACTCACCTCTCGCAATATGAGT
1 AAACATAAATTGAAAA-TACCTCAGC--GTGCCCCAAGGCTCAACTCACCTCTCGCAATATGAGT
8679617 TGATTTTTG
63 TGATTTTTG
8679626 ACAA-ATAGAATTTGAAAATACCTCAGCGTGCCCCAAGGCTCAACTCACCTCTCGCAATATGAGT
1 A-AACATA-AA-TTGAAAATACCTCAGCGTGCCCCAAGGCTCAACTCACCTCTCGCAATATGAGT
8679690 TGATTTTCTTG
63 TGA-TTT-TTG
** **
8679701 AAACATAAATTGAAAATACCTCAGCGTGCCCTGAGGCTTGACTCACCTCTCGCAATATGAGTTGA
1 AAACATAAATTGAAAATACCTCAGCGTGCCCCAAGGCTCAACTCACCTCTCGCAATATGAGTTGA
8679766 TTTTTG
66 TTTTTG
* ** ***
8679772 AAAAGTATAAATT-AAAA-A---CAGAAAT--TAAAAGGCTCAACTCACCTCTCGCAATATGAGT
1 -AAA-CATAAATTGAAAATACCTCAG-CGTGCCCCAAGGCTCAACTCACCTCTCGCAATATGAGT
8679830 TGATTTTTG
63 TGATTTTTG
8679839 AAAAACATAAATTGAAAA
1 --AAACATAAATTGAAAA
8679857 CAGAATTTGA
Statistics
Matches: 201, Mismatches: 18, Indels: 29
0.81 0.07 0.12
Matches are distributed among these distances:
67 43 0.21
68 11 0.05
69 1 0.00
71 4 0.02
72 10 0.05
73 99 0.49
74 12 0.06
75 21 0.10
ACGTcount: A:0.37, C:0.21, G:0.15, T:0.28
Consensus pattern (71 bp):
AAACATAAATTGAAAATACCTCAGCGTGCCCCAAGGCTCAACTCACCTCTCGCAATATGAGTTGA
TTTTTG
Found at i:8679831 original size:140 final size:147
Alignment explanation
Indices: 8679552--8679959 Score: 402
Period size: 155 Copynumber: 2.7 Consensus size: 147
8679542 AATATAAATT
* * *
8679552 AAAACAAAAATTGAAAACT-CCTCAGCATGTGAACC-AATGCTCAACTCACCTCTCGCAATATGA
1 AAAACAGAAATTGAAAA-TACCTCAGCA-GTG-ACCTGAGGCTCAACTCACCTCTCGCAATATGA
* * * ** *** **
8679615 GTTGATTTTTGACAAATAGAATTTGAAAATACCTCAGCGTGCCCCAAGGCTCAACTCACCTCTCG
63 GTTGATTTTTGAAAAATAAAAATTGAAAA-A-CAGAAATTG--AAAAGGCTCAACTCACCTCTCG
8679680 CAATATGAGTTGA-TTTT-C-TTG
124 CAATATGAGTTGATTTTTACATTG
* * **
8679701 -AAACATAAATTGAAAATACCTCAGC-GTGCCCTGAGGCTTGACTCACCTCTCGCAATATGAGTT
1 AAAACAGAAATTGAAAATACCTCAGCAGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
* *
8679764 GATTTTTGAAAAGTATAAATT-AAAAACAGAAATT-AAAAGGCTCAACTCACCTCTCGCAATATG
66 GATTTTTGAAAAATAAAAATTGAAAAACAGAAATTGAAAAGGCTCAACTCACCTCTCGCAATATG
8679827 AGTTGATTTTTGAAAAACATAAATTG
131 AGTTGATTTTT-----AC----ATTG
* *
8679853 AAAACAGAATTTGAAAATACCTCGGCATGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGT
1 AAAACAGAAATTGAAAATACCTCAGCA-GTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGT
8679918 TGATTTTTGAAAAATAAAAATTGGAAAAACAGAAATTGAAAA
65 TGATTTTTGAAAAATAAAAATT-GAAAAACAGAAATTGAAAA
8679960 TACCTCAGCG
Statistics
Matches: 214, Mismatches: 25, Indels: 31
0.79 0.09 0.11
Matches are distributed among these distances:
140 33 0.15
141 4 0.02
143 3 0.01
144 1 0.00
145 6 0.03
146 47 0.22
147 2 0.01
148 22 0.10
152 3 0.01
153 22 0.10
155 54 0.25
157 13 0.06
158 4 0.02
ACGTcount: A:0.38, C:0.20, G:0.15, T:0.27
Consensus pattern (147 bp):
AAAACAGAAATTGAAAATACCTCAGCAGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
GATTTTTGAAAAATAAAAATTGAAAAACAGAAATTGAAAAGGCTCAACTCACCTCTCGCAATATG
AGTTGATTTTTACATTG
Found at i:8679908 original size:88 final size:88
Alignment explanation
Indices: 8679801--8680107 Score: 415
Period size: 88 Copynumber: 3.5 Consensus size: 88
8679791 AGAAATTAAA
* *
8679801 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACATAAATTGAAAACAGAATTTG
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAATATAAATTGAAAACAGAAATTG
*
8679866 AAAATACCTCGGCATGTGA-CCTG
66 AAAATACCTCAGC-TGTGACCCTG
*
8679889 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAATAAAAATTGGAAAAACAGAAAT
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAATATAAATT-G-AAAACAGAAAT
8679954 TGAAAATACCTCAGC-GT-ACCCTG
64 TGAAAATACCTCAGCTGTGACCCTG
* * ** *
8679977 AGGCTCAACTCACCTCTCGCAATATAAATTGATTTTTGAAAAATATAAACTACAAAACAAAAATT
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAATATAAA-TTGAAAACAGAAATT
* * *
8680042 GAAAATACCTCAGCGTGCGAGCC-A
65 GAAAATACCTCAGC-TGTGACCCTG
* *
8680066 AGGCTCAACTCACCTCTCGCAATATGAGTTGAGTTTGGAAAA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAA
8680108 GCAAAAAATA
Statistics
Matches: 195, Mismatches: 17, Indels: 13
0.87 0.08 0.06
Matches are distributed among these distances:
87 26 0.13
88 101 0.52
89 41 0.21
90 27 0.14
ACGTcount: A:0.38, C:0.20, G:0.16, T:0.25
Consensus pattern (88 bp):
AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAATATAAATTGAAAACAGAAATTG
AAAATACCTCAGCTGTGACCCTG
Found at i:8692458 original size:21 final size:20
Alignment explanation
Indices: 8692438--8692551 Score: 56
Period size: 21 Copynumber: 5.3 Consensus size: 20
8692428 ATAACAATAC
8692438 TAATATTATATAAAGATATA
1 TAATATTATATAAAGATATA
* *
8692458 CTTATTTATATATTAAAGATATA
1 -TAATAT-TATA-TAAAGATATA
8692481 TACATA-TATAATAAACGAATAATA
1 TA-ATATTAT-ATAAA-G-AT-ATA
* *
8692505 TAATATT-TA-ATATATATA
1 TAATATTATATAAAGATATA
8692523 CGTAATATGTATAATAAAGATA-A
1 --TAATAT-TAT-ATAAAGATATA
8692546 TAATAT
1 TAATAT
8692552 ACATAATATA
Statistics
Matches: 71, Mismatches: 8, Indels: 28
0.66 0.07 0.26
Matches are distributed among these distances:
18 3 0.04
19 2 0.03
20 6 0.08
21 20 0.28
22 9 0.13
23 20 0.28
24 11 0.15
ACGTcount: A:0.52, C:0.04, G:0.05, T:0.39
Consensus pattern (20 bp):
TAATATTATATAAAGATATA
Found at i:8692490 original size:23 final size:22
Alignment explanation
Indices: 8692434--8692495 Score: 58
Period size: 23 Copynumber: 2.9 Consensus size: 22
8692424 AATAATAACA
*
8692434 ATACTAATAT-TATATAAAGAT
1 ATACTCATATATATATAAAGAT
* *
8692455 ATACTTATTTATATATTAAAGAT
1 ATACTCATATATATA-TAAAGAT
8692478 ATA-TACATATATA-ATAAA
1 ATACT-CATATATATATAAA
8692496 CGAATAATAT
Statistics
Matches: 34, Mismatches: 4, Indels: 6
0.77 0.09 0.14
Matches are distributed among these distances:
21 12 0.35
22 6 0.18
23 16 0.47
ACGTcount: A:0.52, C:0.05, G:0.03, T:0.40
Consensus pattern (22 bp):
ATACTCATATATATATAAAGAT
Found at i:8692571 original size:32 final size:30
Alignment explanation
Indices: 8692512--8692584 Score: 85
Period size: 30 Copynumber: 2.4 Consensus size: 30
8692502 ATATAATATT
* * *
8692512 TAATATATATACGTAATATGTATAATAAAGA
1 TAATA-ATATACATAATATATATAATAAACA
8692543 TAATAATATACATAATATATATAAAATAAACA
1 TAATAATATACATAATATATAT--AATAAACA
8692575 TAAT-ATATAC
1 TAATAATATAC
8692585 GTATGTAACA
Statistics
Matches: 37, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
30 15 0.41
31 11 0.30
32 11 0.30
ACGTcount: A:0.56, C:0.05, G:0.04, T:0.34
Consensus pattern (30 bp):
TAATAATATACATAATATATATAATAAACA
Found at i:8692575 original size:20 final size:21
Alignment explanation
Indices: 8692533--8692583 Score: 68
Period size: 20 Copynumber: 2.5 Consensus size: 21
8692523 CGTAATATGT
* * *
8692533 ATAATAAAGATAATAATATAC
1 ATAATATATATAATAATAAAC
8692554 ATAATATATATAA-AATAAAC
1 ATAATATATATAATAATAAAC
8692574 ATAATATATA
1 ATAATATATA
8692584 CGTATGTAAC
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
20 16 0.59
21 11 0.41
ACGTcount: A:0.63, C:0.04, G:0.02, T:0.31
Consensus pattern (21 bp):
ATAATATATATAATAATAAAC
Found at i:8692816 original size:19 final size:18
Alignment explanation
Indices: 8692773--8692816 Score: 52
Period size: 18 Copynumber: 2.4 Consensus size: 18
8692763 CACTACTATA
*
8692773 ATAACAATAATAATAAAT
1 ATAAAAATAATAATAAAT
* *
8692791 ATTAAAATAATATTAAAAT
1 ATAAAAATAATAAT-AAAT
8692810 ATAAAAA
1 ATAAAAA
8692817 CAAATACAAT
Statistics
Matches: 21, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
18 11 0.52
19 10 0.48
ACGTcount: A:0.68, C:0.02, G:0.00, T:0.30
Consensus pattern (18 bp):
ATAAAAATAATAATAAAT
Found at i:8692897 original size:22 final size:23
Alignment explanation
Indices: 8692860--8692905 Score: 67
Period size: 22 Copynumber: 2.0 Consensus size: 23
8692850 AAAATAAGCC
*
8692860 TATACGTAAAATATATATACATA
1 TATACGTAAAACATATATACATA
*
8692883 TATAC-TAAAACATATATATATA
1 TATACGTAAAACATATATACATA
8692905 T
1 T
8692906 GATAATGATA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
22 16 0.76
23 5 0.24
ACGTcount: A:0.52, C:0.09, G:0.02, T:0.37
Consensus pattern (23 bp):
TATACGTAAAACATATATACATA
Found at i:8692921 original size:3 final size:3
Alignment explanation
Indices: 8692907--8692960 Score: 56
Period size: 3 Copynumber: 18.3 Consensus size: 3
8692897 TATATATATG
* * * *
8692907 ATA ATG ATA ATA ATA ATG ATA ATA ATA GTA ATA ATA CTA ATA AT- ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
*
8692954 AAA ATA A
1 ATA ATA A
8692961 CAAGAATATT
Statistics
Matches: 40, Mismatches: 10, Indels: 2
0.77 0.19 0.04
Matches are distributed among these distances:
2 2 0.05
3 38 0.95
ACGTcount: A:0.61, C:0.02, G:0.06, T:0.31
Consensus pattern (3 bp):
ATA
Found at i:8695764 original size:20 final size:21
Alignment explanation
Indices: 8695741--8695791 Score: 68
Period size: 20 Copynumber: 2.4 Consensus size: 21
8695731 AAATGATAGG
*
8695741 TAAATAAATAAACG-AAAAAA
1 TAAATAAATAAAAGAAAAAAA
8695761 TAAATAAATAAAAGATAAAAAA
1 TAAATAAATAAAAGA-AAAAAA
8695783 TAAAATAAA
1 T-AAATAAA
8695792 AATGCTATGC
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
20 13 0.48
22 7 0.26
23 7 0.26
ACGTcount: A:0.76, C:0.02, G:0.04, T:0.18
Consensus pattern (21 bp):
TAAATAAATAAAAGAAAAAAA
Found at i:8695783 original size:14 final size:15
Alignment explanation
Indices: 8695742--8695787 Score: 58
Period size: 16 Copynumber: 3.1 Consensus size: 15
8695732 AATGATAGGT
*
8695742 AAATAAATAAACGAAA
1 AAATAAATAAA-TAAA
8695758 AAATAAATAAATAAA
1 AAATAAATAAATAAA
*
8695773 AGATAAA-AAATAAA
1 AAATAAATAAATAAA
8695787 A
1 A
8695788 TAAAAATGCT
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
14 8 0.29
15 9 0.32
16 11 0.39
ACGTcount: A:0.78, C:0.02, G:0.04, T:0.15
Consensus pattern (15 bp):
AAATAAATAAATAAA
Found at i:8695945 original size:17 final size:17
Alignment explanation
Indices: 8695906--8695944 Score: 55
Period size: 17 Copynumber: 2.4 Consensus size: 17
8695896 AATATGAATA
8695906 ATAAAATAATAATAATG
1 ATAAAATAATAATAATG
8695923 ATAAAATAA-AA-AATG
1 ATAAAATAATAATAATG
8695938 CATAAAA
1 -ATAAAA
8695945 AGAGGAAATA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
15 4 0.19
16 8 0.38
17 9 0.43
ACGTcount: A:0.69, C:0.03, G:0.05, T:0.23
Consensus pattern (17 bp):
ATAAAATAATAATAATG
Found at i:8705279 original size:25 final size:25
Alignment explanation
Indices: 8705227--8705279 Score: 61
Period size: 25 Copynumber: 2.1 Consensus size: 25
8705217 TACTAAATTA
* **
8705227 TTTTATATGTCATCTATTTTAAGTT
1 TTTTATATATCATCTATTTTAAACT
* *
8705252 TTTTATATATTATTTATTTTAAACT
1 TTTTATATATCATCTATTTTAAACT
8705277 TTT
1 TTT
8705280 ACACATGTTA
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.26, C:0.06, G:0.04, T:0.64
Consensus pattern (25 bp):
TTTTATATATCATCTATTTTAAACT
Found at i:8705348 original size:50 final size:45
Alignment explanation
Indices: 8705294--8705432 Score: 102
Period size: 49 Copynumber: 2.9 Consensus size: 45
8705284 ATGTTATCTA
8705294 TTTTATATTTTATTTAGTAAACGGTTTTATATGTTATTTATTTTAAAACT
1 TTTTATATTTTATTTAG-AAACGG-TTT-TA--TTATTTATTTTAAAACT
* * **
8705344 TTTTACATTGTATATTT-GAAACTGTTTTATTATTTATTTTAAGCCTT
1 TTTTATATT-T-TATTTAGAAACGGTTTTATTATTTATTTTAAAAC-T
**
8705391 TTATATATATTATTTATTTA-AAACTATTTTATTATTTATTTT
1 TT-T-TATA-T-TTTATTTAGAAACGGTTTTATTATTTATTTT
8705433 GAATCGTTTT
Statistics
Matches: 75, Mismatches: 6, Indels: 17
0.77 0.06 0.17
Matches are distributed among these distances:
46 14 0.19
47 3 0.04
48 3 0.04
49 32 0.43
50 15 0.20
51 3 0.04
52 5 0.07
ACGTcount: A:0.29, C:0.05, G:0.06, T:0.60
Consensus pattern (45 bp):
TTTTATATTTTATTTAGAAACGGTTTTATTATTTATTTTAAAACT
Found at i:8705423 original size:22 final size:22
Alignment explanation
Indices: 8705327--8705431 Score: 68
Period size: 22 Copynumber: 4.5 Consensus size: 22
8705317 GTTTTATATG
8705327 TTATTTATTTTAAAACT-TTTTACA
1 TTATTTA-TTTAAAACTATTTT--A
* * * *
8705351 TTGTATATTTGAAACTGTTTTA
1 TTATTTATTTAAAACTATTTTA
** *
8705373 TTATTTATTTTAAGCCTTTTATATATA
1 TTATTTA-TTTAAAAC---TAT-TTTA
8705400 TTATTTATTTAAAACTATTTTA
1 TTATTTATTTAAAACTATTTTA
8705422 TTATTTATTT
1 TTATTTATTT
8705432 TGAATCGTTT
Statistics
Matches: 62, Mismatches: 13, Indels: 14
0.70 0.15 0.16
Matches are distributed among these distances:
22 19 0.31
23 16 0.26
24 9 0.15
26 8 0.13
27 10 0.16
ACGTcount: A:0.30, C:0.06, G:0.04, T:0.60
Consensus pattern (22 bp):
TTATTTATTTAAAACTATTTTA
Found at i:8705460 original size:49 final size:49
Alignment explanation
Indices: 8705356--8705462 Score: 128
Period size: 49 Copynumber: 2.2 Consensus size: 49
8705346 TTACATTGTA
* * * *
8705356 TATTTGAAACTGTTTTATTATTTATTTTAAGCCTTTTATATATATTATT
1 TATTTAAAACTATTTTATTATTTATTTTAAGCCGTTTATATAGATTATT
* *
8705405 TATTTAAAACTATTTTATTATTTATTTTGAA-TCGTTT-TATAGGTTATT
1 TATTTAAAACTATTTTATTATTTATTTT-AAGCCGTTTATATAGATTATT
8705453 TATTTTAAAA
1 TA-TTTAAAA
8705463 TGTTATTTAT
Statistics
Matches: 50, Mismatches: 6, Indels: 4
0.83 0.10 0.07
Matches are distributed among these distances:
48 11 0.22
49 37 0.74
50 2 0.04
ACGTcount: A:0.31, C:0.05, G:0.07, T:0.58
Consensus pattern (49 bp):
TATTTAAAACTATTTTATTATTTATTTTAAGCCGTTTATATAGATTATT
Found at i:8705469 original size:17 final size:17
Alignment explanation
Indices: 8705447--8705483 Score: 65
Period size: 17 Copynumber: 2.2 Consensus size: 17
8705437 CGTTTTATAG
8705447 GTTATTTATTTTAAAAT
1 GTTATTTATTTTAAAAT
*
8705464 GTTATTTATTTTAAATT
1 GTTATTTATTTTAAAAT
8705481 GTT
1 GTT
8705484 TTATATATTA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.30, C:0.00, G:0.08, T:0.62
Consensus pattern (17 bp):
GTTATTTATTTTAAAAT
Found at i:8709524 original size:25 final size:25
Alignment explanation
Indices: 8709492--8709542 Score: 102
Period size: 25 Copynumber: 2.0 Consensus size: 25
8709482 GACGTCATTT
8709492 CATCGTGGCCCTAAATGCCCCAAAA
1 CATCGTGGCCCTAAATGCCCCAAAA
8709517 CATCGTGGCCCTAAATGCCCCAAAA
1 CATCGTGGCCCTAAATGCCCCAAAA
8709542 C
1 C
8709543 GGTATTGTTT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.31, C:0.37, G:0.16, T:0.16
Consensus pattern (25 bp):
CATCGTGGCCCTAAATGCCCCAAAA
Found at i:8717250 original size:68 final size:68
Alignment explanation
Indices: 8717141--8717275 Score: 252
Period size: 68 Copynumber: 2.0 Consensus size: 68
8717131 GACTACGAAA
* *
8717141 GAGATCCTTGTAATTTTTAGAACTAATTCAGAGTAATTTTCAAAACACACTTATTACTCTATGCC
1 GAGATCCTTGTAATTTTTAGAACTAATTCAGAATAATTTTCAAAACACACTTATTACTCTAAGCC
8717206 TGG
66 TGG
8717209 GAGATCCTTGTAATTTTTAGAACTAATTCAGAATAATTTTCAAAACACACTTATTACTCTAAGCC
1 GAGATCCTTGTAATTTTTAGAACTAATTCAGAATAATTTTCAAAACACACTTATTACTCTAAGCC
8717274 TG
66 TG
8717276 TGAGTAATAG
Statistics
Matches: 65, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
68 65 1.00
ACGTcount: A:0.34, C:0.18, G:0.12, T:0.36
Consensus pattern (68 bp):
GAGATCCTTGTAATTTTTAGAACTAATTCAGAATAATTTTCAAAACACACTTATTACTCTAAGCC
TGG
Found at i:8720933 original size:46 final size:45
Alignment explanation
Indices: 8720789--8721005 Score: 181
Period size: 46 Copynumber: 4.7 Consensus size: 45
8720779 ATTGTGAGCT
* * * * *
8720789 AGTGTAAGACATGTCTGGGACATGCATCAGCCAC-ATCATGAAAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGA-AACG-AAGTC
* * * *
8720835 AATGTAAGACCATGTCTGGGACATGGCATCGGCATTGAGACG-AGTGC
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTCGAAACGAAGT-C
*
8720882 TAGTGTAAGACATGTTTGGGACATGCATCGGCCTCGAAACGTAAGTC
1 -AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAAACG-AAGTC
* * *
8720929 AGTGTAAGACATGTCTGGGACATGCATCGG-CTACGAGATG-TGTC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCT-CGAAACGAAGTC
* *
8720973 AATGTAAGACCATGTCTGGGACATAGCGTCGGC
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGC
8721006 ACAAATATGC
Statistics
Matches: 141, Mismatches: 19, Indels: 21
0.78 0.10 0.12
Matches are distributed among these distances:
44 11 0.08
45 16 0.11
46 64 0.45
47 29 0.21
48 20 0.14
49 1 0.01
ACGTcount: A:0.28, C:0.20, G:0.29, T:0.23
Consensus pattern (45 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAAACGAAGTC
Found at i:8724463 original size:44 final size:44
Alignment explanation
Indices: 8724400--8724539 Score: 174
Period size: 44 Copynumber: 3.2 Consensus size: 44
8724390 CACCATAGAG
* *
8724400 AATCTTATCTCCCTGAAGTTCCAGTGGAGCAGATTAAAGCTACA
1 AATCTTATCTCCCTGAAGTTACAGTGGAGCAAATTAAAGCTACA
* * ** *
8724444 AATCTTATCTTCCTAAAGTTACAGTAAAGCAAATTGAAGCTACA
1 AATCTTATCTCCCTGAAGTTACAGTGGAGCAAATTAAAGCTACA
* * *
8724488 AATCTCATCTCCCTGAAGTTGCAGTGGAGCAAATTGAAA-CGACA
1 AATCTTATCTCCCTGAAGTTACAGTGGAGCAAATT-AAAGCTACA
8724532 AATCTTAT
1 AATCTTAT
8724540 ACCTCTAAAG
Statistics
Matches: 79, Mismatches: 16, Indels: 2
0.81 0.16 0.02
Matches are distributed among these distances:
44 77 0.97
45 2 0.03
ACGTcount: A:0.36, C:0.21, G:0.16, T:0.28
Consensus pattern (44 bp):
AATCTTATCTCCCTGAAGTTACAGTGGAGCAAATTAAAGCTACA
Found at i:8727953 original size:17 final size:17
Alignment explanation
Indices: 8727931--8727963 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
8727921 GATATGATAC
8727931 TAAAAT-TATTAAAAAAT
1 TAAAATATA-TAAAAAAT
8727948 TAAAATATATAAAAAA
1 TAAAATATATAAAAAA
8727964 AATCAAGGAA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
17 13 0.87
18 2 0.13
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (17 bp):
TAAAATATATAAAAAAT
Found at i:8727964 original size:18 final size:17
Alignment explanation
Indices: 8727931--8727964 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
8727921 GATATGATAC
*
8727931 TAAAATTATTAAAAAAT
1 TAAAATTATAAAAAAAT
8727948 TAAAATATATAAAAAAA
1 TAAAAT-TATAAAAAAA
8727965 ATCAAGGAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (17 bp):
TAAAATTATAAAAAAAT
Found at i:8728255 original size:22 final size:21
Alignment explanation
Indices: 8728220--8728295 Score: 68
Period size: 22 Copynumber: 3.7 Consensus size: 21
8728210 AAAAGGTATC
* *
8728220 TACAAATTAAATCTCTAAGAT
1 TACAAATCATATCTCTAAGAT
8728241 TACAAAATCATATCTTCTAAGAT
1 TAC-AAATCATATC-TCTAAGAT
* *
8728264 TGCATATCATA--TCTAAGAT
1 TACAAATCATATCTCTAAGAT
*
8728283 TGC-AATCATATCT
1 TACAAATCATATCT
8728296 AAGATTGTAT
Statistics
Matches: 46, Mismatches: 5, Indels: 9
0.77 0.08 0.15
Matches are distributed among these distances:
18 6 0.13
19 11 0.24
20 1 0.02
21 3 0.07
22 15 0.33
23 10 0.22
ACGTcount: A:0.41, C:0.17, G:0.07, T:0.36
Consensus pattern (21 bp):
TACAAATCATATCTCTAAGAT
Found at i:8728312 original size:35 final size:37
Alignment explanation
Indices: 8728249--8728327 Score: 121
Period size: 35 Copynumber: 2.2 Consensus size: 37
8728239 ATTACAAAAT
8728249 CATATC-T-TCTAAGATTGCATATCATATCTAAGATTG
1 CATATCATATCTAAGATTG-ATATCATATCTAAGATTG
8728285 CA-ATCATATCTAAGATTG-TATCATATCTAAGATTG
1 CATATCATATCTAAGATTGATATCATATCTAAGATTG
8728320 CATATCAT
1 CATATCAT
8728328 TGAAGATTAT
Statistics
Matches: 40, Mismatches: 0, Indels: 6
0.87 0.00 0.13
Matches are distributed among these distances:
35 22 0.55
36 8 0.20
37 10 0.25
ACGTcount: A:0.35, C:0.16, G:0.10, T:0.38
Consensus pattern (37 bp):
CATATCATATCTAAGATTGATATCATATCTAAGATTG
Found at i:8728325 original size:14 final size:15
Alignment explanation
Indices: 8728270--8728325 Score: 60
Period size: 17 Copynumber: 3.5 Consensus size: 15
8728260 AGATTGCATA
8728270 TCATATCTAAGATTG
1 TCATATCTAAGATTG
8728285 CAATCATATCTAAGATTG
1 ---TCATATCTAAGATTG
8728303 TATCATATCTAAGATTG
1 --TCATATCTAAGATTG
8728320 -CATATC
1 TCATATC
8728326 ATTGAAGATT
Statistics
Matches: 37, Mismatches: 1, Indels: 4
0.88 0.02 0.10
Matches are distributed among these distances:
14 6 0.16
17 16 0.43
18 15 0.41
ACGTcount: A:0.36, C:0.16, G:0.11, T:0.38
Consensus pattern (15 bp):
TCATATCTAAGATTG
Found at i:8728335 original size:17 final size:19
Alignment explanation
Indices: 8728256--8728327 Score: 123
Period size: 19 Copynumber: 3.9 Consensus size: 19
8728246 AATCATATCT
8728256 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
8728275 TCTAAGATTGCA-ATCATA
1 TCTAAGATTGCATATCATA
8728293 TCTAAGATTG--TATCATA
1 TCTAAGATTGCATATCATA
8728310 TCTAAGATTGCATATCAT
1 TCTAAGATTGCATATCAT
8728328 TGAAGATTAT
Statistics
Matches: 50, Mismatches: 0, Indels: 6
0.89 0.00 0.11
Matches are distributed among these distances:
17 16 0.32
18 16 0.32
19 18 0.36
ACGTcount: A:0.36, C:0.15, G:0.11, T:0.38
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:8728739 original size:45 final size:44
Alignment explanation
Indices: 8728690--8728861 Score: 238
Period size: 45 Copynumber: 3.9 Consensus size: 44
8728680 TGCTATCTTT
8728690 GATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGTTACCTTC
1 GATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGTTA-CTTC
8728735 GATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGCTT-CTTC
1 GATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTG-TTACTTC
* * * *
8728779 AATCTGCTCCCCGTCTAATACAGAGATGTCAAATCTGTTATCTCC
1 GATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGTTA-CTTC
* * * *
8728824 GATTTGCTCTCCGTCTAATACAGAGATGTCAAATCTGT
1 GATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGT
8728862 CATTTTGGAT
Statistics
Matches: 117, Mismatches: 7, Indels: 6
0.90 0.05 0.05
Matches are distributed among these distances:
43 2 0.02
44 38 0.32
45 75 0.64
46 2 0.02
ACGTcount: A:0.25, C:0.30, G:0.16, T:0.30
Consensus pattern (44 bp):
GATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGTTACTTC
Found at i:8728798 original size:89 final size:90
Alignment explanation
Indices: 8728677--8728860 Score: 271
Period size: 89 Copynumber: 2.1 Consensus size: 90
8728667 GGAAGTCGAT
** *
8728677 ATCTGCTATCTTTGATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGTTACCTTCGATCTGC
1 ATCTGCTATCTTCAATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGTTACCTCCGATCTGC
8728742 TCCCCGTCTAATACAGAGACGCCAA
66 TCCCCGTCTAATACAGAGACGCCAA
* * * *
8728767 ATCTGCT-TCTTCAATCTGCTCCCCGTCTAATACAGAGATGTCAAATCTGTTATCTCCGATTTGC
1 ATCTGCTATCTTCAATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGTTACCTCCGATCTGC
* * *
8728831 TCTCCGTCTAATACAGAGATGTCAA
66 TCCCCGTCTAATACAGAGACGCCAA
8728856 ATCTG
1 ATCTG
8728861 TCATTTTGGA
Statistics
Matches: 84, Mismatches: 10, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
89 77 0.92
90 7 0.08
ACGTcount: A:0.24, C:0.29, G:0.15, T:0.31
Consensus pattern (90 bp):
ATCTGCTATCTTCAATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGTTACCTCCGATCTGC
TCCCCGTCTAATACAGAGACGCCAA
Found at i:8729024 original size:78 final size:79
Alignment explanation
Indices: 8728890--8729540 Score: 394
Period size: 78 Copynumber: 8.4 Consensus size: 79
8728880 ATGTAAACAC
* * *
8728890 ATGAAGGT-CAGATCTACTATGTCTTCGATCTACTCCCCGTCTAATACAGAGTTGCCAAATCATT
1 ATGAAGGTCCAGATCTGCTATGTCTTCGATCTACTCCCCGTCTAATACAGAGATGCCAAATCATA
8728954 TTGGATCTGCTTCA
66 TTGGATCTGCTTCA
* * *
8728968 GTGAAGGTCCA-ATCTGTTATGTCTTCGATCTACTCCCCGTCTAATACAGAGATGCCAAATCATC
1 ATGAAGGTCCAGATCTGCTATGTCTTCGATCTACTCCCCGTCTAATACAGAGATGCCAAATCATA
*
8729032 TTGGATCTCCTTCA
66 TTGGATCTGCTTCA
* * *
8729046 ATGAAGGT-CAGATCTGCTGTGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATTATA
1 ATGAAGGTCCAGATCTGCTATGTCTTCGATCTACTCCCCGTCTAATACAGAGATGCCAAATCATA
8729110 TTGGATCTGCTTCA
66 TTGGATCTGCTTCA
* *** * ** * * ***
8729124 ATGAAGGT-CGGATCTGCTTCAATGAAGGTCAGATCTGCT--ATGTCT-TTGATCTGCTCT-CC-
1 ATGAAGGTCCAGATCTGC-T--ATG-TCTTC-GATCTACTCCCCGTCTAAT-A-CAGAGATGCCA
** * *
8729183 GTTGA-ATATGGATATGC--C-
59 AATCATAT-TGGATCTGCTTCA
* * * ** * * * *
8729201 A--AA--T-CTG-T-TTCT-TCGAT-TT-GTTCT-CTGACAGTACAGAGATTCCA-A-AT--CAT
1 ATGAAGGTCCAGATCTGCTAT-G-TCTTCGATCTACTCCCCGT-C-TA-A-TACAGAGATGCCAA
* * * ** ** *
8729251 CTTAGATCTGCTTCAACATAAACA
60 ATCATAT-TGGATCTGC-T--TCA
* * * * *
8729275 CGTGAAAG-CCAAATCTGCTATGTCTTTGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCAT
1 -ATGAAGGTCCAGATCTGCTATGTCTTCGATCTACTCCCCGTCTAATACAGAGATGCCAAATCAT
*
8729339 CTTGGATCTGCTTCA
65 ATTGGATCTGCTTCA
* * *
8729354 ATGAAGGTCCA-ATCTGTTATGTCTTTGATCTACTCCCCGTCTAATACAGAGATGCCAAATCATC
1 ATGAAGGTCCAGATCTGCTATGTCTTCGATCTACTCCCCGTCTAATACAGAGATGCCAAATCATA
8729418 TTGGATCTGCTTCA
66 TTGGATCTGCTTCA
* * * * *
8729432 ATGAAGGT-CAGATCTGCTGTGTCTTCGATCTGCTCCCCGTCTAATACAAAGATGTCAAATCATC
1 ATGAAGGTCCAGATCTGCTATGTCTTCGATCTACTCCCCGTCTAATACAGAGATGCCAAATCATA
8729496 TTGGATCTGCTTCA
66 TTGGATCTGCTTCA
8729510 ATGAAGGT-CAGATCTGCTATGTCTTCGATCT
1 ATGAAGGTCCAGATCTGCTATGTCTTCGATCT
8729541 GCTCTCTGTC
Statistics
Matches: 447, Mismatches: 82, Indels: 88
0.72 0.13 0.14
Matches are distributed among these distances:
64 2 0.00
65 4 0.01
66 3 0.01
67 6 0.01
68 8 0.02
69 1 0.00
70 1 0.00
71 3 0.01
72 1 0.00
73 4 0.01
75 2 0.00
77 7 0.02
78 323 0.72
79 14 0.03
80 15 0.03
81 19 0.04
82 16 0.04
83 18 0.04
ACGTcount: A:0.25, C:0.24, G:0.18, T:0.33
Consensus pattern (79 bp):
ATGAAGGTCCAGATCTGCTATGTCTTCGATCTACTCCCCGTCTAATACAGAGATGCCAAATCATA
TTGGATCTGCTTCA
Found at i:8729138 original size:21 final size:21
Alignment explanation
Indices: 8729112--8729162 Score: 93
Period size: 21 Copynumber: 2.4 Consensus size: 21
8729102 AAATTATATT
8729112 GGATCTGCTTCAATGAAGGTC
1 GGATCTGCTTCAATGAAGGTC
8729133 GGATCTGCTTCAATGAAGGTC
1 GGATCTGCTTCAATGAAGGTC
*
8729154 AGATCTGCT
1 GGATCTGCT
8729163 ATGTCTTTGA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
21 29 1.00
ACGTcount: A:0.24, C:0.20, G:0.27, T:0.29
Consensus pattern (21 bp):
GGATCTGCTTCAATGAAGGTC
Found at i:8729570 original size:78 final size:78
Alignment explanation
Indices: 8729287--8729544 Score: 437
Period size: 78 Copynumber: 3.3 Consensus size: 78
8729277 TGAAAGCCAA
*
8729287 ATCTGCTATGTCTTTGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCTTGGATCTGCTT
1 ATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCTTGGATCTGCTT
8729352 CAATGAAGGTCCA-
66 CAATGAAGGT-CAG
* * *
8729365 ATCTGTTATGTCTTTGATCTACTCCCCGTCTAATACAGAGATGCCAAATCATCTTGGATCTGCTT
1 ATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCTTGGATCTGCTT
8729430 CAATGAAGGTCAG
66 CAATGAAGGTCAG
* * *
8729443 ATCTGCTGTGTCTTCGATCTGCTCCCCGTCTAATACAAAGATGTCAAATCATCTTGGATCTGCTT
1 ATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCTTGGATCTGCTT
8729508 CAATGAAGGTCAG
66 CAATGAAGGTCAG
8729521 ATCTGCTATGTCTTCGATCTGCTC
1 ATCTGCTATGTCTTCGATCTGCTC
8729545 TCTGTCGAAT
Statistics
Matches: 170, Mismatches: 9, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
77 2 0.01
78 168 0.99
ACGTcount: A:0.24, C:0.25, G:0.18, T:0.33
Consensus pattern (78 bp):
ATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCTTGGATCTGCTT
CAATGAAGGTCAG
Found at i:8729626 original size:199 final size:205
Alignment explanation
Indices: 8729396--8730262 Score: 909
Period size: 220 Copynumber: 4.1 Consensus size: 205
8729386 CTCCCCGTCT
* * * * *
8729396 AATACAGAGATGCCAAATCATCTTGGATCTGCTT-C-A-A-TGAAGGTCAGATCTGCTGTGTCTT
1 AATACAGAGATGCCAAATCATCTTAGATCTGCTTACAACACTGAAAGCCAAATCTGCTATGTCTT
* * * *
8729457 CGATCTGCTCCCCGTCTAATACAAAGATGTCAAATCATCTTGGATCTGCTTC-A-AT-GAAGGTC
66 CGATCTGCTCCCTGTC-AACACAAAGATGCCAAATCATCTTGGATCTACTTCAACATCGAAGGTC
* *
8729519 AGATCTGCTATGTCTTCGATCTGCTCTCTGTCGAATATGAAGATGCTAAATCTGTTTCTTCGATT
130 AGATCTGCTATGTCTTCGATCTGCTCTCCGTCGAATATGAAGATGCCAAATCTGTTTCTTCGATT
8729584 TGTTCTCTGAC
195 TGTTCTCTGAC
* * * * *
8729595 AGTACAGAGATGCCAAATCATCTTAGATCTGCTT-C-A-A-TGAAGGTCAGATCTGCTGTGTCTT
1 AATACAGAGATGCCAAATCATCTTAGATCTGCTTACAACACTGAAAGCCAAATCTGCTATGTCTT
* * * *
8729656 CGATCTGCTCCCTATCAAATACAGAGATGCCAAATCATCTTGGATCTTCTTC-A-AT-GAAGGTC
66 CGATCTGCTCCCTGTC-AACACAAAGATGCCAAATCATCTTGGATCTACTTCAACATCGAAGGTC
*
8729718 AGATCTGCTATGTCTTCGATCTGCTCTCCGTCGAATAT-AGAGATGCCAAATCTGTTTCTTCTAT
130 AGATCTGCTATGTCTTCGATCTGCTCTCCGTCGAATATGA-AGATGCCAAATCTGTTTCTTCGAT
*
8729782 TTGTTCTCTAAC
194 TTGTTCTCTGAC
* * * *
8729794 AGTACAGAGATGCCAAATCATCTTAGATCTTCTTCAGCGTAAACACGTGAAAGCCAAATTTGTTA
1 AATACAGAGATGCCAAATCATCTTAGATCTGCTT-A-C---AACAC-TGAAAGCCAAATCTGCTA
* * *
8729859 TGTCTTCGATCTGCTCCTTGTCAACGCAAGGATGCCAAATCATCTTGGATCTACTTCGATCTGAA
60 TGTCTTCGATCTGCTCCCTGTCAACACAAAGATGCCAAATCATCTTGGATCTAC-T---TC---A
* * *
8729924 GACATCCGAAGGTTAGATCTGCTATGTCTTCGATTTGCTCTCCGTCGAATATGGAGATGCCAAAT
118 -ACAT-CGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCTCCGTCGAATATGAAGATGCCAAAT
* *
8729989 TTGTTTCTTTGATTTGTTCTCTGAC
181 CTGTTTCTTCGATTTGTTCTCTGAC
** *
8730014 AATACAGAGATGTTAAATCATCTCAGATCTGCTTCAGCATAAACACGTGAAAGCCAAATCTGCTA
1 AATACAGAGATGCCAAATCATCTTAGATCTGCTT-A-C---AACAC-TGAAAGCCAAATCTGCTA
* * *
8730079 TGTCTTCGATCTGCTCCTTGTCAACGCAAGGATGCCAAATCATCTTGGATCTACTTCGATGTGAA
60 TGTCTTCGATCTGCTCCCTGTCAACACAAAGATGCCAAATCATCTTGGATCTACTTC--------
* * * *
8730144 AACATCCGAAGGTTAGATCTGCTATGTCTTCGATCTACTCTCCGTCGAATATGGAGATTCCAAAT
117 AACAT-CGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCTCCGTCGAATATGAAGATGCCAAAT
8730209 CTGTTTCTTCGATTTGTTCTCTGAC
181 CTGTTTCTTCGATTTGTTCTCTGAC
** *
8730234 AATACAGAGATGTTAAATCATCTTGGATC
1 AATACAGAGATGCCAAATCATCTTAGATC
8730263 CGTTTCAGCG
Statistics
Matches: 589, Mismatches: 50, Indels: 37
0.87 0.07 0.05
Matches are distributed among these distances:
198 1 0.00
199 218 0.37
202 1 0.00
206 1 0.00
207 1 0.00
208 27 0.05
209 33 0.06
212 2 0.00
216 2 0.00
217 1 0.00
218 2 0.00
219 1 0.00
220 297 0.50
221 2 0.00
ACGTcount: A:0.26, C:0.22, G:0.18, T:0.33
Consensus pattern (205 bp):
AATACAGAGATGCCAAATCATCTTAGATCTGCTTACAACACTGAAAGCCAAATCTGCTATGTCTT
CGATCTGCTCCCTGTCAACACAAAGATGCCAAATCATCTTGGATCTACTTCAACATCGAAGGTCA
GATCTGCTATGTCTTCGATCTGCTCTCCGTCGAATATGAAGATGCCAAATCTGTTTCTTCGATTT
GTTCTCTGAC
Found at i:8729683 original size:78 final size:78
Alignment explanation
Indices: 8729597--8729769 Score: 276
Period size: 78 Copynumber: 2.2 Consensus size: 78
8729587 TCTCTGACAG
*
8729597 TACAGAGATGCCAAATCATCTTAGATCTGCTTCAATGAAGGTCAGATCTGCTGTGTCTTCGATCT
1 TACAGAGATGCCAAATCATCTTAGATCTGCTTCAATGAAGGTCAGATCTGCTATGTCTTCGATCT
8729662 GCTC-CCTATCAAA
66 GCTCTCC-ATCAAA
* *
8729675 TACAGAGATGCCAAATCATCTTGGATCTTCTTCAATGAAGGTCAGATCTGCTATGTCTTCGATCT
1 TACAGAGATGCCAAATCATCTTAGATCTGCTTCAATGAAGGTCAGATCTGCTATGTCTTCGATCT
* *
8729740 GCTCTCCGTCGAA
66 GCTCTCCATCAAA
*
8729753 TATAGAGATGCCAAATC
1 TACAGAGATGCCAAATC
8729770 TGTTTCTTCT
Statistics
Matches: 88, Mismatches: 6, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
78 86 0.98
79 2 0.02
ACGTcount: A:0.27, C:0.24, G:0.18, T:0.31
Consensus pattern (78 bp):
TACAGAGATGCCAAATCATCTTAGATCTGCTTCAATGAAGGTCAGATCTGCTATGTCTTCGATCT
GCTCTCCATCAAA
Found at i:8730100 original size:220 final size:220
Alignment explanation
Indices: 8729711--8730300 Score: 948
Period size: 220 Copynumber: 2.7 Consensus size: 220
8729701 CTTCTTCAAT
* *
8729711 GAAGGTCAGATCTGCTATGTCTTCGATCTGCTCTCCGTCGAATATAGAGATGCCAAATCTGTTTC
1 GAAGGTTAGATCTGCTATGTCTTCGATCTGCTCTCCGTCGAATATGGAGATGCCAAATCTGTTTC
* * ** *
8729776 TTCT-ATTTGTTCTCTAACAGTACAGAGATGCCAAATCATCTTAGATCTTCTTCAGCGTAAACAC
66 TT-TGATTTGTTCTCTGACAATACAGAGATGTTAAATCATCTTAGATCTGCTTCAGCGTAAACAC
* *
8729840 GTGAAAGCCAAATTTGTTATGTCTTCGATCTGCTCCTTGTCAACGCAAGGATGCCAAATCATCTT
130 GTGAAAGCCAAATCTGCTATGTCTTCGATCTGCTCCTTGTCAACGCAAGGATGCCAAATCATCTT
*
8729905 GGATCTACTTCGATCTGAAGACATCC
195 GGATCTACTTCGATCTGAAAACATCC
* *
8729931 GAAGGTTAGATCTGCTATGTCTTCGATTTGCTCTCCGTCGAATATGGAGATGCCAAATTTGTTTC
1 GAAGGTTAGATCTGCTATGTCTTCGATCTGCTCTCCGTCGAATATGGAGATGCCAAATCTGTTTC
* *
8729996 TTTGATTTGTTCTCTGACAATACAGAGATGTTAAATCATCTCAGATCTGCTTCAGCATAAACACG
66 TTTGATTTGTTCTCTGACAATACAGAGATGTTAAATCATCTTAGATCTGCTTCAGCGTAAACACG
8730061 TGAAAGCCAAATCTGCTATGTCTTCGATCTGCTCCTTGTCAACGCAAGGATGCCAAATCATCTTG
131 TGAAAGCCAAATCTGCTATGTCTTCGATCTGCTCCTTGTCAACGCAAGGATGCCAAATCATCTTG
*
8730126 GATCTACTTCGATGTGAAAACATCC
196 GATCTACTTCGATCTGAAAACATCC
* *
8730151 GAAGGTTAGATCTGCTATGTCTTCGATCTACTCTCCGTCGAATATGGAGATTCCAAATCTGTTTC
1 GAAGGTTAGATCTGCTATGTCTTCGATCTGCTCTCCGTCGAATATGGAGATGCCAAATCTGTTTC
* * * * *
8730216 TTCGATTTGTTCTCTGACAATACAGAGATGTTAAATCATCTTGGATCCGTTTCAGCGTAAACACC
66 TTTGATTTGTTCTCTGACAATACAGAGATGTTAAATCATCTTAGATCTGCTTCAGCGTAAACACG
* *
8730281 TGAAGGTCAAATCTGCTATG
131 TGAAAGCCAAATCTGCTATG
8730301 CTTTAGCCTG
Statistics
Matches: 341, Mismatches: 28, Indels: 2
0.92 0.08 0.01
Matches are distributed among these distances:
219 1 0.00
220 340 1.00
ACGTcount: A:0.26, C:0.22, G:0.18, T:0.33
Consensus pattern (220 bp):
GAAGGTTAGATCTGCTATGTCTTCGATCTGCTCTCCGTCGAATATGGAGATGCCAAATCTGTTTC
TTTGATTTGTTCTCTGACAATACAGAGATGTTAAATCATCTTAGATCTGCTTCAGCGTAAACACG
TGAAAGCCAAATCTGCTATGTCTTCGATCTGCTCCTTGTCAACGCAAGGATGCCAAATCATCTTG
GATCTACTTCGATCTGAAAACATCC
Found at i:8740191 original size:17 final size:17
Alignment explanation
Indices: 8740169--8740203 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
8740159 GATATGATAC
8740169 TAAAAT-TATTAAAAAAA
1 TAAAATATA-TAAAAAAA
8740186 TAAAATATATAAAAAAA
1 TAAAATATATAAAAAAA
8740203 T
1 T
8740204 TCTAGGAAAC
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 15 0.88
18 2 0.12
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (17 bp):
TAAAATATATAAAAAAA
Found at i:8740202 original size:18 final size:17
Alignment explanation
Indices: 8740169--8740202 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
8740159 GATATGATAC
*
8740169 TAAAATTATTAAAAAAA
1 TAAAATTATAAAAAAAA
8740186 TAAAATATATAAAAAAA
1 TAAAAT-TATAAAAAAA
8740203 TTCTAGGAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26
Consensus pattern (17 bp):
TAAAATTATAAAAAAAA
Found at i:8740518 original size:19 final size:19
Alignment explanation
Indices: 8740494--8740530 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
8740484 AATCATATCT
*
8740494 TCTAAGATTGCGTATCATA
1 TCTAAGATTGCATATCATA
8740513 TCTAAGATTGCATATCAT
1 TCTAAGATTGCATATCAT
8740531 TGAAGATTAT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.32, C:0.16, G:0.14, T:0.38
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:8740538 original size:17 final size:19
Alignment explanation
Indices: 8740497--8740538 Score: 52
Period size: 19 Copynumber: 2.3 Consensus size: 19
8740487 CATATCTTCT
* *
8740497 AAGATTGCGTATCATATCT
1 AAGATTGCATATCATATCG
8740516 AAGATTGCATATCAT-T-G
1 AAGATTGCATATCATATCG
8740533 AAGATT
1 AAGATT
8740539 ATATTCCATA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
17 6 0.29
18 1 0.05
19 14 0.67
ACGTcount: A:0.36, C:0.12, G:0.17, T:0.36
Consensus pattern (19 bp):
AAGATTGCATATCATATCG
Found at i:8741532 original size:20 final size:20
Alignment explanation
Indices: 8741474--8741533 Score: 57
Period size: 20 Copynumber: 2.9 Consensus size: 20
8741464 AAAAAAATTG
*
8741474 AAATGTATATTTGAAATATTTT
1 AAATATATATTTG-AA-ATTTT
* * * *
8741496 ATATATTTTTTTTAAATTTT
1 AAATATATATTTGAAATTTT
8741516 AAATATATATTTGAAATT
1 AAATATATATTTGAAATT
8741534 ATTTTTAAAA
Statistics
Matches: 29, Mismatches: 9, Indels: 2
0.73 0.22 0.05
Matches are distributed among these distances:
20 19 0.66
21 2 0.07
22 8 0.28
ACGTcount: A:0.40, C:0.00, G:0.05, T:0.55
Consensus pattern (20 bp):
AAATATATATTTGAAATTTT
Found at i:8741568 original size:27 final size:29
Alignment explanation
Indices: 8741522--8741589 Score: 88
Period size: 28 Copynumber: 2.4 Consensus size: 29
8741512 TTTTAAATAT
* *
8741522 ATATTTGAAAT-TATTTTTAA-AATTTTAA
1 ATATTT-AAATATATTTTTAATAATATAAA
8741550 ATA-TTAAATATATTTTTAATAATATAAA
1 ATATTTAAATATATTTTTAATAATATAAA
8741578 ATATTTAAATAT
1 ATATTTAAATAT
8741590 TTTAAAGATA
Statistics
Matches: 35, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
26 4 0.11
27 11 0.31
28 12 0.34
29 8 0.23
ACGTcount: A:0.49, C:0.00, G:0.01, T:0.50
Consensus pattern (29 bp):
ATATTTAAATATATTTTTAATAATATAAA
Found at i:8741590 original size:27 final size:26
Alignment explanation
Indices: 8741522--8741600 Score: 79
Period size: 28 Copynumber: 2.9 Consensus size: 26
8741512 TTTTAAATAT
* *
8741522 ATATTTGAAATTATTTTTAAAATTTTAA
1 ATATTT-AAA-TATTTTTAAAATATAAA
*
8741550 ATATTAAATATATTTTTAATAATATAAA
1 ATATTTAA-ATATTTTTAA-AATATAAA
8741578 ATATTTAAATA-TTTTAAAGATAT
1 ATATTTAAATATTTTTAAA-ATAT
8741601 GACATTTTAA
Statistics
Matches: 44, Mismatches: 4, Indels: 8
0.79 0.07 0.14
Matches are distributed among these distances:
25 1 0.02
26 10 0.23
27 14 0.32
28 19 0.43
ACGTcount: A:0.48, C:0.00, G:0.03, T:0.49
Consensus pattern (26 bp):
ATATTTAAATATTTTTAAAATATAAA
Found at i:8741600 original size:19 final size:18
Alignment explanation
Indices: 8741522--8741600 Score: 56
Period size: 18 Copynumber: 4.2 Consensus size: 18
8741512 TTTTAAATAT
8741522 ATATTTGAAATTATTTTTAAA
1 ATATTT-AAA-TA-TTTTAAA
8741543 AT-TTTAAATA--TTAAA
1 ATATTTAAATATTTTAAA
* * *
8741558 TATATTTTTAATAATATAAA
1 -ATA-TTTAAATATTTTAAA
8741578 ATATTTAAATATTTTAAA
1 ATATTTAAATATTTTAAA
8741596 GATAT
1 -ATAT
8741601 GACATTTTAA
Statistics
Matches: 47, Mismatches: 5, Indels: 14
0.71 0.08 0.21
Matches are distributed among these distances:
15 5 0.11
16 2 0.04
18 21 0.45
19 10 0.21
20 7 0.15
21 2 0.04
ACGTcount: A:0.48, C:0.00, G:0.03, T:0.49
Consensus pattern (18 bp):
ATATTTAAATATTTTAAA
Found at i:8741669 original size:11 final size:11
Alignment explanation
Indices: 8741653--8741711 Score: 50
Period size: 11 Copynumber: 5.1 Consensus size: 11
8741643 ATATTTTAAA
8741653 TTTTAAATATT
1 TTTTAAATATT
8741664 TTTTAAAT-TT
1 TTTTAAATATT
*
8741674 GTTTTAAA-ATA
1 -TTTTAAATATT
8741685 TTTTAAATTATAAT
1 TTTTAAA-TAT--T
8741699 TTTTAAATTATT
1 TTTTAAA-TATT
8741711 T
1 T
8741712 AAAATATATT
Statistics
Matches: 40, Mismatches: 2, Indels: 11
0.75 0.04 0.21
Matches are distributed among these distances:
10 9 0.22
11 16 0.40
12 4 0.10
14 11 0.28
ACGTcount: A:0.37, C:0.00, G:0.02, T:0.61
Consensus pattern (11 bp):
TTTTAAATATT
Found at i:8741669 original size:18 final size:19
Alignment explanation
Indices: 8741632--8741673 Score: 59
Period size: 18 Copynumber: 2.2 Consensus size: 19
8741622 GTTTTATAAT
8741632 ATTTTAAATGTATATTTTAA
1 ATTTTAAA-GTATATTTTAA
*
8741652 ATTTTAAA-TATTTTTTAA
1 ATTTTAAAGTATATTTTAA
8741670 ATTT
1 ATTT
8741674 GTTTTAAAAT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
18 13 0.62
20 8 0.38
ACGTcount: A:0.38, C:0.00, G:0.02, T:0.60
Consensus pattern (19 bp):
ATTTTAAAGTATATTTTAA
Found at i:8741690 original size:21 final size:22
Alignment explanation
Indices: 8741653--8741693 Score: 66
Period size: 21 Copynumber: 1.9 Consensus size: 22
8741643 ATATTTTAAA
*
8741653 TTTTAAATATTTTTTAAATTTG
1 TTTTAAATATATTTTAAATTTG
8741675 TTTTAAA-ATATTTTAAATT
1 TTTTAAATATATTTTAAATT
8741694 ATAATTTTTA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 11 0.61
22 7 0.39
ACGTcount: A:0.37, C:0.00, G:0.02, T:0.61
Consensus pattern (22 bp):
TTTTAAATATATTTTAAATTTG
Found at i:8741701 original size:23 final size:24
Alignment explanation
Indices: 8741651--8741735 Score: 61
Period size: 24 Copynumber: 3.6 Consensus size: 24
8741641 GTATATTTTA
* *
8741651 AATTTTAAATATTTTTTAAATT-T
1 AATTTTAAAGATATTTTAAATTAT
*
8741674 -GTTTTAAA-ATATTTTAAATTAT
1 AATTTTAAAGATATTTTAAATTAT
* *
8741696 AATTTTTAAA-TTATTTAAAATATATT
1 AA-TTTTAAAGATATTTTAAAT-TA-T
*
8741722 ATTTTTAAAGATAT
1 AATTTTAAAGATAT
8741736 AACCTCTCAA
Statistics
Matches: 49, Mismatches: 7, Indels: 9
0.75 0.11 0.14
Matches are distributed among these distances:
21 11 0.22
22 8 0.16
24 16 0.33
25 9 0.18
26 5 0.10
ACGTcount: A:0.42, C:0.00, G:0.02, T:0.55
Consensus pattern (24 bp):
AATTTTAAAGATATTTTAAATTAT
Found at i:8741710 original size:24 final size:25
Alignment explanation
Indices: 8741675--8741735 Score: 79
Period size: 24 Copynumber: 2.4 Consensus size: 25
8741665 TTTAAATTTG
*
8741675 TTTTAAAATATTTTAAAT-TATAAT
1 TTTTAAAATATTTAAAATATATAAT
* *
8741699 TTTTAAATTATTTAAAATATATTAT
1 TTTTAAAATATTTAAAATATATAAT
8741724 TTTTAAAGATAT
1 TTTTAAA-ATAT
8741736 AACCTCTCAA
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
24 16 0.52
25 12 0.39
26 3 0.10
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.54
Consensus pattern (25 bp):
TTTTAAAATATTTAAAATATATAAT
Found at i:8741773 original size:135 final size:139
Alignment explanation
Indices: 8741505--8741775 Score: 333
Period size: 135 Copynumber: 2.0 Consensus size: 139
8741495 TATATATTTT
8741505 TTTTAAATTTTAAATATATATTTGAAATTATTTTTAAAATTTTAAATATTAAATATATTTTTAAT
1 TTTTAAATTTTAAATATATATTTGAAATTATTTTTAAAATTTTAAATATT-AATATATTTTTAAT
* * * *
8741570 AATATAAAATATTTAAATATTTTAAAGATATGACATTTTAAATTTATTATTAGTTTTATAATATT
65 AATATAAAATATTT-AATATTTTAAAGATATAACATCTCAAATTTATTATTAGTTTTATAATAAT
8741635 TTAAATGTATA
129 TTAAATGTATA
* *
8741646 TTTTAAATTTTAAATAT-T-TTTTAAATT-TGTTTTAAAATATTTTAA-ATT-ATA-ATTTTTAA
1 TTTTAAATTTTAAATATATATTTGAAATTAT-TTTTAAAAT-TTTAAATATTAATATATTTTT-A
* * * * *
8741705 ATTATTTAAAATATATT-AT-TTTTAAAGATATAACCTCTCAAATTTGTTATTTGTTTTATAATA
63 ATAATATAAAATAT-TTAATATTTTAAAGATATAACATCTCAAATTTATTATTAGTTTTATAATA
8741768 ATTTAAAT
127 ATTTAAAT
8741776 ATTTTTTTAA
Statistics
Matches: 115, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
135 45 0.39
136 8 0.07
137 16 0.14
138 3 0.03
139 20 0.17
140 6 0.05
141 17 0.15
ACGTcount: A:0.42, C:0.02, G:0.03, T:0.53
Consensus pattern (139 bp):
TTTTAAATTTTAAATATATATTTGAAATTATTTTTAAAATTTTAAATATTAATATATTTTTAATA
ATATAAAATATTTAATATTTTAAAGATATAACATCTCAAATTTATTATTAGTTTTATAATAATTT
AAATGTATA
Found at i:8741794 original size:11 final size:12
Alignment explanation
Indices: 8741769--8741798 Score: 53
Period size: 11 Copynumber: 2.6 Consensus size: 12
8741759 TTTATAATAA
8741769 TTTAAATATTTT
1 TTTAAATATTTT
8741781 TTTAAATA-TTT
1 TTTAAATATTTT
8741792 TTTAAAT
1 TTTAAAT
8741799 TTTAAATATA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 10 0.56
12 8 0.44
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (12 bp):
TTTAAATATTTT
Found at i:8741811 original size:12 final size:13
Alignment explanation
Indices: 8741796--8741845 Score: 50
Period size: 12 Copynumber: 3.7 Consensus size: 13
8741786 ATATTTTTTA
8741796 AATTTTAAATA-T
1 AATTTTAAATATT
8741808 AATTTTTATAAATTATT
1 AA--TTT-TAAA-TATT
8741825 AATTTTAAA-ATT
1 AATTTTAAATATT
8741837 AATTTTAAA
1 AATTTTAAA
8741846 GATATTCAAA
Statistics
Matches: 33, Mismatches: 0, Indels: 10
0.77 0.00 0.23
Matches are distributed among these distances:
12 14 0.42
14 7 0.21
15 7 0.21
16 2 0.06
17 3 0.09
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (13 bp):
AATTTTAAATATT
Found at i:8741881 original size:21 final size:21
Alignment explanation
Indices: 8741781--8741891 Score: 57
Period size: 21 Copynumber: 5.0 Consensus size: 21
8741771 TAAATATTTT
8741781 TTTAAATATTTTTTAAATTTTAAA
1 TTTAAA-ATTTTTTAAA--TTAAA
*
8741805 --TATAATTTTTATAAATTATTAA
1 TTTAAAATTTTT-TAAATTA--AA
* *
8741827 TTTTAAAATTAATTTTAAA-GATA
1 -TTTAAAATT--TTTTAAATTAAA
*
8741850 TTCAAACATTTTTTAAATTAAA
1 TTTAAA-ATTTTTTAAATTAAA
**
8741872 TTTAAAATTTTAAAAATTAA
1 TTTAAAATTTTTTAAATTAA
8741892 TACTTTATAG
Statistics
Matches: 67, Mismatches: 10, Indels: 23
0.67 0.10 0.23
Matches are distributed among these distances:
20 3 0.04
21 25 0.37
22 21 0.31
23 4 0.06
25 7 0.10
26 4 0.06
27 3 0.04
ACGTcount: A:0.47, C:0.02, G:0.01, T:0.50
Consensus pattern (21 bp):
TTTAAAATTTTTTAAATTAAA
Found at i:8742765 original size:17 final size:16
Alignment explanation
Indices: 8742743--8742812 Score: 68
Period size: 17 Copynumber: 4.0 Consensus size: 16
8742733 CAACATTTTC
8742743 TTTTAACATATTTAAAA
1 TTTTAA-ATATTTAAAA
8742760 TTTTAATATATTTAAAA
1 TTTTAA-ATATTTAAAA
* *
8742777 TTTTTTAAGTTTTTTAAAA
1 --TTTTAA-ATATTTAAAA
8742796 TTTTAAATATATTAAAA
1 TTTTAAATAT-TTAAAA
8742813 AATCTTTTTC
Statistics
Matches: 44, Mismatches: 6, Indels: 6
0.79 0.11 0.11
Matches are distributed among these distances:
16 2 0.05
17 28 0.64
19 14 0.32
ACGTcount: A:0.44, C:0.01, G:0.01, T:0.53
Consensus pattern (16 bp):
TTTTAAATATTTAAAA
Found at i:8742783 original size:36 final size:37
Alignment explanation
Indices: 8742743--8742813 Score: 99
Period size: 36 Copynumber: 1.9 Consensus size: 37
8742733 CAACATTTTC
*
8742743 TTTTAACATATTTAAAATTTT-AATATATTTAAAATT
1 TTTTAACATATTTAAAATTTTAAATATATTAAAAATT
** *
8742779 TTTTAAGTTTTTTAAAATTTTAAATATATTAAAAA
1 TTTTAACATATTTAAAATTTTAAATATATTAAAAA
8742814 ATCTTTTTCT
Statistics
Matches: 30, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
36 18 0.60
37 12 0.40
ACGTcount: A:0.45, C:0.01, G:0.01, T:0.52
Consensus pattern (37 bp):
TTTTAACATATTTAAAATTTTAAATATATTAAAAATT
Found at i:8742911 original size:71 final size:71
Alignment explanation
Indices: 8742836--8742975 Score: 235
Period size: 71 Copynumber: 2.0 Consensus size: 71
8742826 TTTCCTATTA
* ** **
8742836 AAAATATATTGAATATATTAAAATTTTAATTTTTTTTATACTTAACATTTTTTAATATATTTAAT
1 AAAATATATTAAATATATTAAAATTTTAAAATTGGTTATACTTAACATTTTTTAATATATTTAAT
8742901 TTTTAG
66 TTTTAG
8742907 AAAATATATTAAATATATTAAAATTTTAAAATTGGTTATACTTAACATTTTTTAATATATTTAAT
1 AAAATATATTAAATATATTAAAATTTTAAAATTGGTTATACTTAACATTTTTTAATATATTTAAT
8742972 TTTT
66 TTTT
8742976 TTAAGTTTTT
Statistics
Matches: 64, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
71 64 1.00
ACGTcount: A:0.41, C:0.03, G:0.03, T:0.53
Consensus pattern (71 bp):
AAAATATATTAAATATATTAAAATTTTAAAATTGGTTATACTTAACATTTTTTAATATATTTAAT
TTTTAG
Found at i:8743571 original size:20 final size:20
Alignment explanation
Indices: 8743546--8743598 Score: 70
Period size: 20 Copynumber: 2.6 Consensus size: 20
8743536 ATGTGACCAG
8743546 TTATAATATATATTTTTAAT
1 TTATAATATATATTTTTAAT
* * *
8743566 TTATAATTTAAATTTTTACT
1 TTATAATATATATTTTTAAT
*
8743586 TTTTAATATATAT
1 TTATAATATATAT
8743599 ATATTTAAAT
Statistics
Matches: 27, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
20 27 1.00
ACGTcount: A:0.38, C:0.02, G:0.00, T:0.60
Consensus pattern (20 bp):
TTATAATATATATTTTTAAT
Found at i:8743835 original size:22 final size:21
Alignment explanation
Indices: 8743808--8743860 Score: 70
Period size: 21 Copynumber: 2.5 Consensus size: 21
8743798 AAATATTTAA
8743808 ATATTTTATATTATTAAAAAAT
1 ATATTTTATATT-TTAAAAAAT
* *
8743830 ATATTTAAAATTTTAAAAAAT
1 ATATTTTATATTTTAAAAAAT
*
8743851 ATATATTATA
1 ATATTTTATA
8743861 AAATATTTCA
Statistics
Matches: 26, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
21 16 0.62
22 10 0.38
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (21 bp):
ATATTTTATATTTTAAAAAAT
Found at i:8743854 original size:23 final size:22
Alignment explanation
Indices: 8743821--8743889 Score: 70
Period size: 23 Copynumber: 3.1 Consensus size: 22
8743811 TTTTATATTA
8743821 TTAAAAA-ATATATTTAAAATT
1 TTAAAAATATATATTTAAAATT
8743842 TTAAAAAATATATATTATAAAATAT
1 TT-AAAAATATATATT-TAAAAT-T
* * *
8743867 TT-CAAATATACATTTCAAATT
1 TTAAAAATATATATTTAAAATT
8743888 TT
1 TT
8743890 TTAAAATTAA
Statistics
Matches: 41, Mismatches: 3, Indels: 8
0.79 0.06 0.15
Matches are distributed among these distances:
21 5 0.12
22 10 0.24
23 17 0.41
24 6 0.15
25 3 0.07
ACGTcount: A:0.52, C:0.04, G:0.00, T:0.43
Consensus pattern (22 bp):
TTAAAAATATATATTTAAAATT
Found at i:8743856 original size:38 final size:38
Alignment explanation
Indices: 8743789--8743863 Score: 98
Period size: 38 Copynumber: 2.0 Consensus size: 38
8743779 TTGAAAGGTC
* * * *
8743789 ATATTTTTAAAATATTTAAATATTTTATATTATTAAAAA
1 ATATATTTAAAATATTTAAAAAATATATATTA-TAAAAA
8743828 ATATATTTAAAAT-TTTAAAAAATATATATTATAAAA
1 ATATATTTAAAATATTTAAAAAATATATATTATAAAA
8743864 TATTTCAAAT
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
37 5 0.16
38 15 0.47
39 12 0.38
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (38 bp):
ATATATTTAAAATATTTAAAAAATATATATTATAAAAA
Found at i:8745097 original size:20 final size:21
Alignment explanation
Indices: 8745067--8745109 Score: 70
Period size: 20 Copynumber: 2.1 Consensus size: 21
8745057 TCAGCCCTCC
*
8745067 ATTTATTTTTATTATATGTTG
1 ATTTATTTTTATTAAATGTTG
8745088 ATTT-TTTTTATTAAATGTTG
1 ATTTATTTTTATTAAATGTTG
8745108 AT
1 AT
8745110 ACTTACACTT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
20 17 0.81
21 4 0.19
ACGTcount: A:0.26, C:0.00, G:0.09, T:0.65
Consensus pattern (21 bp):
ATTTATTTTTATTAAATGTTG
Found at i:8747010 original size:251 final size:252
Alignment explanation
Indices: 8746524--8747008 Score: 717
Period size: 251 Copynumber: 1.9 Consensus size: 252
8746514 TTGGTTTCAA
*
8746524 ATTTGAGCGTTTTAGGTGCTCTTTGTGTTCTTATAAATTAATTTCCAACAAACAAACTCAAAACA
1 ATTTGAGCGTTTTAGGTGCTCTTTGTGTTCTAATAAATTAATTTCCAACAAACAAACTCAAAACA
* *
8746589 ACCTTCTTCTTTTTTTACCCAAAAAGTTTTTTGAAGAAAATATTTTTCAATCGGTAAACGTTTTT
66 A-C--CTTCTTTTTTTACCCAAAAAGTTTTTAGAAGAAAATATTTTTCAATCGGTAAACATTTTT
* * * *
8746654 CAAATTATTTGAAATTTTATATACTGATTCTTGGCACTCTTTTAGAATATAGAAAAATATTTCAA
128 CAAATAATCTGAAATTTTACATACTGATTCTTGGCACTCTCTTAGAATATAGAAAAATATTTCAA
8746719 AAAAAAAGTGATCGAAAAAGTGCAAAAACAGAAAAAAAATAAAGAATTAGATTTGGTATAAG
193 AAAAAAAGTGATCGAAAAAGTGCAAAAAC--AAAAAAAATAAAGAATTAGATTTGGTATAAG
* * * * *
8746781 ATTTGGGCGTTTTAGGTGTTCTTTGTGTTCTAATAAATTGATTTCCAGCAAACAACCTCAAAACA
1 ATTTGAGCGTTTTAGGTGCTCTTTGTGTTCTAATAAATTAATTTCCAACAAACAAACTCAAAACA
8746846 A-CTT-TTTTTTTACCCAAAAAGTTTTTAGAA-AAAATATTTTTCAAT-GAGTAAACATTTTTCA
66 ACCTTCTTTTTTTACCCAAAAAGTTTTTAGAAGAAAATATTTTTCAATCG-GTAAACATTTTTCA
*
8746907 AATAATCTGAAATTTTACATACTGATTCTTGGCACTCTCTTGGAATATAGAAAAATATTTCCCAC
130 AATAATCTGAAATTTTACATACTGATTCTTGGCACTCTCTTAGAATATAGAAAAATATTT--CA-
* * *
8746972 AAAAAAAAGTGATTGGAAAAGTGCAAAAACATAAAAA
192 AAAAAAAAGTGATCGAAAAAGTGCAAAAACAAAAAAA
8747009 TACGAAACAA
Statistics
Matches: 208, Mismatches: 16, Indels: 13
0.88 0.07 0.05
Matches are distributed among these distances:
250 1 0.00
251 83 0.40
252 31 0.15
253 5 0.02
254 28 0.13
257 60 0.29
ACGTcount: A:0.40, C:0.13, G:0.12, T:0.35
Consensus pattern (252 bp):
ATTTGAGCGTTTTAGGTGCTCTTTGTGTTCTAATAAATTAATTTCCAACAAACAAACTCAAAACA
ACCTTCTTTTTTTACCCAAAAAGTTTTTAGAAGAAAATATTTTTCAATCGGTAAACATTTTTCAA
ATAATCTGAAATTTTACATACTGATTCTTGGCACTCTCTTAGAATATAGAAAAATATTTCAAAAA
AAAAGTGATCGAAAAAGTGCAAAAACAAAAAAAATAAAGAATTAGATTTGGTATAAG
Found at i:8748092 original size:132 final size:131
Alignment explanation
Indices: 8747820--8748196 Score: 382
Period size: 132 Copynumber: 2.9 Consensus size: 131
8747810 GTGAAAACCT
* ** * * * * * *
8747820 AAAGGAATATTCGATCGTTTTGAACAAGCGAGAAATCACAACCCAGCACGATAGGGCATGATTCC
1 AAAGGGATATTCGATTATTTTGAGCAAACGAGAAATTACAACCCAACACGTTAGGGCACGATTCC
* * * * * * * * *
8747885 CGAATTGTCAAACACCGAGTATTGCCTTCGTTTTAGAGGATTTTTAGAAGACCTGAATGGAATCT
66 CGAATTGCCAAATATCAAATATTGCCTTCGTTTTAAAGAATTTTTAAAAGACCTGAATGAAATCT
8747950 C
131 C
* *
8747951 AAAGGGATATTTGATTTTTTTGAGCAAACGAGAAATTACAACCCAACACGTTAGGGCACGATTCC
1 AAAGGGATATTCGATTATTTTGAGCAAACGAGAAATTACAACCCAACACGTTAGGGCACGATTCC
* * *
8748016 ACGAATTGCCAAATATCAAACT-TTGCCTTCGTTTTAAAGAATTTTTAAAAGGCGTGAGTGAAAG
66 -CGAATTGCCAAATATCAAA-TATTGCCTTCGTTTTAAAGAATTTTTAAAAGACCTGAATGAAA-
*
8748080 T-TT
128 TCTC
* * * *
8748083 GAAGGGATATTCGATTATTTCGAGCAAACGCA-AAATTGCAACCCAACACGTTAGGGCACTATTC
1 AAAGGGATATTCGATTATTTTGAGCAAACG-AGAAATTACAACCCAACACGTTAGGGCACGATTC
* * * * * *
8748147 TGCAAATTGCCAAATATCGAATCTCGTCTTCGTTTTAAAGAATTTTTAAA
65 -CCGAATTGCCAAATATCAAATATTGCCTTCGTTTTAAAGAATTTTTAAA
8748197 TGAATACTTG
Statistics
Matches: 206, Mismatches: 34, Indels: 11
0.82 0.14 0.04
Matches are distributed among these distances:
131 56 0.27
132 147 0.71
133 3 0.01
ACGTcount: A:0.34, C:0.18, G:0.19, T:0.29
Consensus pattern (131 bp):
AAAGGGATATTCGATTATTTTGAGCAAACGAGAAATTACAACCCAACACGTTAGGGCACGATTCC
CGAATTGCCAAATATCAAATATTGCCTTCGTTTTAAAGAATTTTTAAAAGACCTGAATGAAATCT
C
Found at i:8753336 original size:23 final size:21
Alignment explanation
Indices: 8753309--8753354 Score: 65
Period size: 23 Copynumber: 2.1 Consensus size: 21
8753299 GAAACAATCA
*
8753309 AAATAACTAAAATAGAAATAAAT
1 AAATAAATAAAATA-AAA-AAAT
8753332 AAATAAATAAAATAAAAAAAT
1 AAATAAATAAAATAAAAAAAT
8753353 AA
1 AA
8753355 GTAGAAATTA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
21 6 0.27
22 3 0.14
23 13 0.59
ACGTcount: A:0.76, C:0.02, G:0.02, T:0.20
Consensus pattern (21 bp):
AAATAAATAAAATAAAAAAAT
Found at i:8753346 original size:17 final size:18
Alignment explanation
Indices: 8753318--8753362 Score: 65
Period size: 17 Copynumber: 2.6 Consensus size: 18
8753308 AAAATAACTA
*
8753318 AAATAGAAATAAATAAAT
1 AAATAGAAATAAAAAAAT
8753336 AAATA-AAATAAAAAAAT
1 AAATAGAAATAAAAAAAT
*
8753353 AAGTAGAAAT
1 AAATAGAAAT
8753363 TATTAACTTA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
17 15 0.62
18 9 0.38
ACGTcount: A:0.73, C:0.00, G:0.07, T:0.20
Consensus pattern (18 bp):
AAATAGAAATAAAAAAAT
Found at i:8755277 original size:12 final size:12
Alignment explanation
Indices: 8755260--8755284 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
8755250 ATAAATAAAT
8755260 AGAAAGAAAAGG
1 AGAAAGAAAAGG
8755272 AGAAAGAAAAGG
1 AGAAAGAAAAGG
8755284 A
1 A
8755285 AAATTTTTAG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.68, C:0.00, G:0.32, T:0.00
Consensus pattern (12 bp):
AGAAAGAAAAGG
Found at i:8755978 original size:29 final size:29
Alignment explanation
Indices: 8755901--8755978 Score: 95
Period size: 30 Copynumber: 2.6 Consensus size: 29
8755891 TTTAATTTGA
*
8755901 TCAACTTTAGTCCTTGTA-TTTTTGAATTAG
1 TCAATTTTAGT-CTTG-ACTTTTTGAATTAG
* *
8755931 TAAATTTTAGTCTATGACTTTTTGAATTGG
1 TCAATTTTAGTCT-TGACTTTTTGAATTAG
8755961 TCAATTTTAGTCTTGACT
1 TCAATTTTAGTCTTGACT
8755979 CAAATAGTAG
Statistics
Matches: 42, Mismatches: 4, Indels: 5
0.82 0.08 0.10
Matches are distributed among these distances:
29 8 0.19
30 34 0.81
ACGTcount: A:0.24, C:0.12, G:0.14, T:0.50
Consensus pattern (29 bp):
TCAATTTTAGTCTTGACTTTTTGAATTAG
Found at i:8758391 original size:19 final size:19
Alignment explanation
Indices: 8758345--8758416 Score: 67
Period size: 19 Copynumber: 3.7 Consensus size: 19
8758335 TATATATTAC
*
8758345 TATTATATATTATTTTCCTCA
1 TATTAT-TATTATTTT-CACA
* * *
8758366 AATTATTATTATTTTTATA
1 TATTATTATTATTTTCACA
8758385 TATTATTA-TATTTTCACA
1 TATTATTATTATTTTCACA
8758403 TA-TATTATATATTT
1 TATTATTAT-TATTT
8758417 ATTAATTATT
Statistics
Matches: 42, Mismatches: 7, Indels: 6
0.76 0.13 0.11
Matches are distributed among these distances:
17 5 0.12
18 10 0.24
19 13 0.31
20 9 0.21
21 5 0.12
ACGTcount: A:0.33, C:0.07, G:0.00, T:0.60
Consensus pattern (19 bp):
TATTATTATTATTTTCACA
Found at i:8758574 original size:20 final size:20
Alignment explanation
Indices: 8758541--8758579 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
8758531 TGTATCGCCA
* *
8758541 ATTATATTTTTTATGATTAC
1 ATTATATATATTATGATTAC
*
8758561 ATTATATATATTATTATTA
1 ATTATATATATTATGATTA
8758580 TTAAATCATA
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.36, C:0.03, G:0.03, T:0.59
Consensus pattern (20 bp):
ATTATATATATTATGATTAC
Found at i:8758638 original size:19 final size:19
Alignment explanation
Indices: 8758602--8758656 Score: 55
Period size: 19 Copynumber: 3.0 Consensus size: 19
8758592 TTTAACCCAC
8758602 ACTATATATATATATTTA-TT
1 ACTATATAT-TAT-TTTATTT
*
8758622 A-TTTAT-TTA-TTTATTT
1 ACTATATATTATTTTATTT
8758638 ACTATATATTATTTTATTT
1 ACTATATATTATTTTATTT
8758657 TAAACTAATA
Statistics
Matches: 29, Mismatches: 2, Indels: 9
0.73 0.05 0.22
Matches are distributed among these distances:
15 4 0.14
16 3 0.10
17 6 0.21
18 4 0.14
19 11 0.38
20 1 0.03
ACGTcount: A:0.33, C:0.04, G:0.00, T:0.64
Consensus pattern (19 bp):
ACTATATATTATTTTATTT
Found at i:8763288 original size:30 final size:29
Alignment explanation
Indices: 8763254--8763313 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 29
8763244 AGTCCTTGTA
8763254 TTTTTGAATTAGTCAATTCTAGTCTATGAC
1 TTTTTGAATTAGTCAATTCTAGTCT-TGAC
* *
8763284 TTTTTGAATTGGTCAATTTTAGTCTTGAC
1 TTTTTGAATTAGTCAATTCTAGTCTTGAC
8763313 T
1 T
8763314 CAAATAGTAG
Statistics
Matches: 28, Mismatches: 2, Indels: 1
0.90 0.06 0.03
Matches are distributed among these distances:
29 5 0.18
30 23 0.82
ACGTcount: A:0.23, C:0.12, G:0.15, T:0.50
Consensus pattern (29 bp):
TTTTTGAATTAGTCAATTCTAGTCTTGAC
Found at i:8763908 original size:21 final size:21
Alignment explanation
Indices: 8763882--8763925 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
8763872 ACATCAAACG
8763882 CAACTTAG-GTAAATGTCACTT
1 CAACTT-GCGTAAATGTCACTT
* *
8763903 CAACTTGCGTGAATGTTACTT
1 CAACTTGCGTAAATGTCACTT
8763924 CA
1 CA
8763926 TGCAAATGGT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
20 1 0.05
21 19 0.95
ACGTcount: A:0.30, C:0.20, G:0.16, T:0.34
Consensus pattern (21 bp):
CAACTTGCGTAAATGTCACTT
Found at i:8764102 original size:21 final size:21
Alignment explanation
Indices: 8764063--8764102 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
8764053 TTATGTCACA
* *
8764063 TTAGTATTTTTGTCCTAAATT
1 TTAGTATTTTTATACTAAATT
*
8764084 TTAGTATTTTTATATTAAA
1 TTAGTATTTTTATACTAAA
8764103 AAAAATTAAA
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.30, C:0.05, G:0.07, T:0.57
Consensus pattern (21 bp):
TTAGTATTTTTATACTAAATT
Found at i:8768757 original size:15 final size:16
Alignment explanation
Indices: 8768737--8768774 Score: 60
Period size: 15 Copynumber: 2.4 Consensus size: 16
8768727 TTAGGAAACG
8768737 TACATAAAAAATATA-
1 TACATAAAAAATATAC
*
8768752 TACATAAAAAATTTAC
1 TACATAAAAAATATAC
8768768 TACATAA
1 TACATAA
8768775 TATAAAATAA
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
15 14 0.67
16 7 0.33
ACGTcount: A:0.61, C:0.11, G:0.00, T:0.29
Consensus pattern (16 bp):
TACATAAAAAATATAC
Found at i:8769193 original size:11 final size:11
Alignment explanation
Indices: 8769162--8769201 Score: 53
Period size: 11 Copynumber: 3.5 Consensus size: 11
8769152 ATATATAAAG
8769162 AAAGAAAAAAA
1 AAAGAAAAAAA
*
8769173 CAACACAAAAAAA
1 -AA-AGAAAAAAA
8769186 AAAGAAAAAAA
1 AAAGAAAAAAA
8769197 AAAGA
1 AAAGA
8769202 TTCGAAAGAA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
11 13 0.52
12 4 0.16
13 8 0.32
ACGTcount: A:0.85, C:0.07, G:0.07, T:0.00
Consensus pattern (11 bp):
AAAGAAAAAAA
Found at i:8769520 original size:26 final size:26
Alignment explanation
Indices: 8769467--8769584 Score: 141
Period size: 26 Copynumber: 4.3 Consensus size: 26
8769457 GCTAGGTGGC
*
8769467 TAGGTTTCTTGTTTTTTTTTTTGGGGGT
1 TAGGTTT-TTCTTTTTTTTTTT-GGGGT
8769495 TAGGTTTTTCTTCTTTTTTTTT-GGGT
1 TAGGTTTTTCTT-TTTTTTTTTGGGGT
8769521 TAGGTTTTTTCTTTTTTTTTTT-GGGT
1 TAGG-TTTTTCTTTTTTTTTTTGGGGT
*
8769547 TAGGTTTTTTTCTCTTTTTTTTTGGGGGT
1 TAGG--TTTTTCT-TTTTTTTTTTGGGGT
8769576 TAGGTTTTT
1 TAGGTTTTT
8769585 TTTGGGAGGG
Statistics
Matches: 83, Mismatches: 2, Indels: 11
0.86 0.02 0.11
Matches are distributed among these distances:
26 25 0.30
27 25 0.30
28 25 0.30
29 8 0.10
ACGTcount: A:0.04, C:0.05, G:0.23, T:0.68
Consensus pattern (26 bp):
TAGGTTTTTCTTTTTTTTTTTGGGGT
Found at i:8769529 original size:27 final size:27
Alignment explanation
Indices: 8769467--8769585 Score: 154
Period size: 28 Copynumber: 4.4 Consensus size: 27
8769457 GCTAGGTGGC
* *
8769467 TAGGTTTCTTGTTTTTTTTTTTGGGGGT
1 TAGGTTTTTTCTTTTTTTTTTT-GGGGT
8769495 TAGG-TTTTTCTTCTTTTTTTTT-GGGT
1 TAGGTTTTTTCTT-TTTTTTTTTGGGGT
8769521 TAGGTTTTTTCTTTTTTTTTTT-GGGT
1 TAGGTTTTTTCTTTTTTTTTTTGGGGT
*
8769547 TAGGTTTTTTTCTCTTTTTTTTTGGGGGT
1 TAGG-TTTTTTCT-TTTTTTTTTTGGGGT
8769576 TAGGTTTTTT
1 TAGGTTTTTT
8769586 TTGGGAGGGC
Statistics
Matches: 83, Mismatches: 3, Indels: 10
0.86 0.03 0.10
Matches are distributed among these distances:
26 25 0.30
27 22 0.27
28 28 0.34
29 8 0.10
ACGTcount: A:0.04, C:0.05, G:0.23, T:0.68
Consensus pattern (27 bp):
TAGGTTTTTTCTTTTTTTTTTTGGGGT
Found at i:8770408 original size:30 final size:29
Alignment explanation
Indices: 8770374--8770430 Score: 87
Period size: 30 Copynumber: 1.9 Consensus size: 29
8770364 GTGACTCGAG
8770374 GCTCAACTCACCTCTCGCAGAAATTAAAAA
1 GCTCAACTCACCTCTCGCA-AAATTAAAAA
* *
8770404 GCTCAACTCACCTTTCGCAATATTAAA
1 GCTCAACTCACCTCTCGCAAAATTAAA
8770431 TTGAAAAAAT
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
29 7 0.28
30 18 0.72
ACGTcount: A:0.37, C:0.30, G:0.09, T:0.25
Consensus pattern (29 bp):
GCTCAACTCACCTCTCGCAAAATTAAAAA
Found at i:8770722 original size:74 final size:74
Alignment explanation
Indices: 8770456--8771258 Score: 1002
Period size: 74 Copynumber: 10.8 Consensus size: 74
8770446 AGTGTGTGAT
* *
8770456 CTGAAGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGACAGAAATTGAAAATACC
1 CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAA-ACAGAAATTGAAATTACC
**
8770521 TCAGCATGTGAA
65 TCAGC--GTGTC
* *
8770533 C-AAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAACAGAAATTGAAAATACC
1 CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTG-AAAACAGAAATTGAAATTACC
*
8770597 TCAACGTGTC
65 TCAGCGTGTC
* ** *
8770607 TTGAGAGCTCAACTCATTTCTCGCAATATGAGTTGA-ATTTTTGAAAACAGAAATTGAAATTACC
1 CTGAG-GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAACAGAAATTGAAATTACC
8770671 TCAGCGTGTC
65 TCAGCGTGTC
* * *
8770681 CCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGACAAAAATTGAAAATACC
1 CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAA-ACAGAAATTGAAATTACC
*
8770746 TCAGCATGTC
65 TCAGCGTGTC
* ** *
8770756 TTGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTTTTTTTGACAACAGAAATTGAAATTA
1 CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA---TTTTTTTGAAAACAGAAATTGAAATTA
8770821 CCTCAGCGTGTC
63 CCTCAGCGTGTC
* **
8770833 CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-ATTTTAAAAAACAGAAATTGAAATTAACC
1 CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAACAGAAATTGAAATT-ACC
8770897 TCAGCGTGTC
65 TCAGCGTGTC
* * * *
8770907 CCGAGGCTCAACTCACCTCTCGCAATACGAGTTGATTTTTTTTGAAAGA-AAAAATTGAAAATAC
1 CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTTGAAA-ACAGAAATTGAAATTAC
*
8770971 CTCAGCACT-TC
64 CTCAGC-GTGTC
* ** * *
8770982 TTGAGGCT-AACTCATTTCTC-TAATATGAGTTGATTTTTTTGACAACAGAAATTGAAA-TACCT
1 CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAACAGAAATTGAAATTACCT
8771044 CAGCGTGTC
66 CAGCGTGTC
*
8771053 CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTGAAAGGCAGAAATTGAAA-TACC
1 CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAA-ACAGAAATTGAAATTACC
* *
8771116 TC-GTGTG-A
65 TCAGCGTGTC
* *
8771124 CTAAGGCTCAACTCACCTCTCGCAATATGGAGTTGA-TTTTTTGACAACAGAAATTGAAATTACC
1 CTGAGGCTCAACTCACCTCTCGCAATAT-GAGTTGATTTTTTTGAAAACAGAAATTGAAATTACC
*
8771188 TCAGTGTGTC
65 TCAGCGTGTC
* * *
8771198 CTGAGGCTCAACTCACCTCTCGCAATATGAGTTCAATTTTTTGAAAGGCAGAAATTGAAAT
1 CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAA-ACAGAAATTGAAAT
8771259 ACGGAAATTG
Statistics
Matches: 634, Mismatches: 68, Indels: 50
0.84 0.09 0.07
Matches are distributed among these distances:
70 1 0.00
71 58 0.09
72 65 0.10
73 101 0.16
74 136 0.21
75 93 0.15
76 108 0.17
77 62 0.10
78 10 0.02
ACGTcount: A:0.32, C:0.20, G:0.17, T:0.31
Consensus pattern (74 bp):
CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAACAGAAATTGAAATTACCT
CAGCGTGTC
Found at i:8770856 original size:225 final size:221
Alignment explanation
Indices: 8770461--8771401 Score: 1141
Period size: 225 Copynumber: 4.2 Consensus size: 221
8770451 GTGATCTGAA
*
8770461 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGACAGAAATTGAAAATACCTCAGC
1 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGACAAAAATTGAAAATACCTCAGC
****
8770526 ATGTGAACAAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAACAGAAATTGAA
66 ATGT-CTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTG-AAAACAGAAATTG-A
* * **
8770591 AATACCTCAACGTGTCTTGAGAGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTTGAAA-AC
128 AATACCTCAGCGTGTCCTGAG-GCTCAACTCACCTCTCGCAATATGAGTTGAATTTTTGAAAGAC
8770655 AGAAATTGAAATTACCTCAGCGTGTCCCGAG
192 AGAAATTGAAA-TACCTCAGCGTGTCCCGAG
8770686 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGACAAAAATTGAAAATACCTCAGC
1 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGACAAAAATTGAAAATACCTCAGC
** *
8770751 ATGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTTTTTTTGACAACAGAAATTGA
66 ATGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA---TTTTTTTGAAAACAGAAATTGA
* *
8770816 AATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAA-TTTTAAAAAAC
128 AA-TACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAATTTTTGAAAGAC
8770880 AGAAATTGAAATTAACCTCAGCGTGTCCCGAG
192 AGAAATTGAAA-T-ACCTCAGCGTGTCCCGAG
*
8770912 GCTCAACTCACCTCTCGCAATACGAGTTGATTTTTTTTGAAAGA-AAAAATTGAAAATACCTCAG
1 GCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTTGAAAGACAAAAATTGAAAATACCTCAG
** * *
8770976 CACT-TCTTGAGGCT-AACTCATTTCTC-TAATATGAGTTGATTTTTTTGACAACAGAAATTGAA
65 CA-TGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAACAGAAATTGAA
* *
8771038 ATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAGGCAG
129 ATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAATTTTTGAAAGACAG
* * **
8771103 AAATTGAAATACCTC-GTGTG-ACTAAG
194 AAATTGAAATACCTCAGCGTGTCCCGAG
* * *
8771129 GCTCAACTCACCTCTCGCAATATGGAGTTGA-TTTTTTGACA-ACAGAAATTGAAATTACCTCAG
1 GCTCAACTCACCTCTCGCAATAT-GAGTTGATTTTTTTGAAAGACAAAAATTGAAAATACCTCAG
** * *
8771192 TGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTCAATTTTTTGAAAGGCAGAAATTGAA
65 CATGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTT-GA-TTTTT------------TTGAA
* ** *
8771257 ATACGGAAATTGAAATACCTC-GCGTGTGACCTGAGGCTCAACT-TGCTGCTCGCAATACGAGTT
116 A-ACAGAAATTGAAATACCTCAGCGTGT--CCTGAGGCTCAACTCACCT-CTCGCAATATGAGTT
* *
8771320 GATTTTTTTTTGAAAGACAGAAATTGAAATACCTCAGCGTGTCCTGAG
177 GA---ATTTTTGAAAGACAGAAATTGAAATACCTCAGCGTGTCCCGAG
8771368 GCTCAACTCACCTCTCGCAATATGAGTTGATTTT
1 GCTCAACTCACCTCTCGCAATATGAGTTGATTTT
8771402 AAAAGTAGAA
Statistics
Matches: 635, Mismatches: 43, Indels: 62
0.86 0.06 0.08
Matches are distributed among these distances:
215 2 0.00
216 36 0.06
217 35 0.06
218 21 0.03
219 6 0.01
220 55 0.09
221 43 0.07
224 49 0.08
225 127 0.20
226 108 0.17
227 22 0.03
232 11 0.02
233 20 0.03
234 30 0.05
237 29 0.05
238 11 0.02
239 30 0.05
ACGTcount: A:0.31, C:0.21, G:0.18, T:0.31
Consensus pattern (221 bp):
GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGACAAAAATTGAAAATACCTCAGC
ATGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAACAGAAATTGAAAT
ACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAATTTTTGAAAGACAGAA
ATTGAAATACCTCAGCGTGTCCCGAG
Found at i:8771272 original size:14 final size:14
Alignment explanation
Indices: 8771248--8771274 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
8771238 TTGAAAGGCA
8771248 GAAATTGAAATACG
1 GAAATTGAAATACG
8771262 GAAATTGAAATAC
1 GAAATTGAAATAC
8771275 CTCGCGTGTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.52, C:0.07, G:0.19, T:0.22
Consensus pattern (14 bp):
GAAATTGAAATACG
Found at i:8771327 original size:89 final size:90
Alignment explanation
Indices: 8771173--8771351 Score: 238
Period size: 89 Copynumber: 2.0 Consensus size: 90
8771163 TTTGACAACA
* *
8771173 GAAATTGAAATTACCTCAGTGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTCA-ATTT
1 GAAATTGAAATTACCTCAGTGTGACCTGAGGCTCAACTCACCTCTCGCAATACGAGTTCATATTT
*
8771237 TTTGAAAGGCAGAAATTGAAATACG
66 TTTGAAAGACAGAAATTGAAATACG
* ** * *
8771262 GAAATTGAAA-TACCTCGCGTGTGACCTGAGGCTCAACT-TGCTGCTCGCAATACGAGTTGATTT
1 GAAATTGAAATTACCTC-AGTGTGACCTGAGGCTCAACTCACCT-CTCGCAATACGAGTTCA-TA
8771325 TTTTTTGAAAGACAGAAATTGAAATAC
63 TTTTTTGAAAGACAGAAATTGAAATAC
8771352 CTCAGCGTGT
Statistics
Matches: 78, Mismatches: 8, Indels: 6
0.85 0.09 0.07
Matches are distributed among these distances:
88 8 0.10
89 44 0.56
91 26 0.33
ACGTcount: A:0.32, C:0.18, G:0.20, T:0.30
Consensus pattern (90 bp):
GAAATTGAAATTACCTCAGTGTGACCTGAGGCTCAACTCACCTCTCGCAATACGAGTTCATATTT
TTTGAAAGACAGAAATTGAAATACG
Found at i:8771369 original size:165 final size:160
Alignment explanation
Indices: 8771102--8771395 Score: 441
Period size: 165 Copynumber: 1.8 Consensus size: 160
8771092 TTGAAAGGCA
*
8771102 GAAATTGAAATACCTCGTGTGACTAAGGCTCAACTCACCTCTCGCAATATGGAGTTGATTTTTTG
1 GAAATTGAAATACCTCGTGTGACTAAGGCTCAACTCACCTCTCGCAATATCGAGTTGATTTTTTG
* *
8771167 ACAACAGAAATTGAAATTACCTCAGTGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTC
66 AAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTC
8771232 AATTTTTTGAAAGGCAGAAATTGAAATACG
131 AATTTTTTGAAAGGCAGAAATTGAAATACG
* **
8771262 GAAATTGAAATACCTCGCGTGTGACCTGAGGCTCAACT-TGCTGCTCGCAATA-CGAGTTGATTT
1 GAAATTGAAATACCT--CGTGTGA-CTAAGGCTCAACTCACCT-CTCGCAATATCGAGTTGA---
8771325 TTTTTTGAAAGACAGAAATTGAAA-TACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAAT
59 TTTTTTGAAA-ACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAAT
8771389 ATGAGTT
123 ATGAGTT
8771396 GATTTTAAAA
Statistics
Matches: 120, Mismatches: 6, Indels: 11
0.88 0.04 0.08
Matches are distributed among these distances:
160 15 0.12
162 16 0.13
163 21 0.17
165 55 0.46
166 13 0.11
ACGTcount: A:0.30, C:0.21, G:0.20, T:0.29
Consensus pattern (160 bp):
GAAATTGAAATACCTCGTGTGACTAAGGCTCAACTCACCTCTCGCAATATCGAGTTGATTTTTTG
AAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTC
AATTTTTTGAAAGGCAGAAATTGAAATACG
Found at i:8771388 original size:76 final size:76
Alignment explanation
Indices: 8771252--8771401 Score: 214
Period size: 76 Copynumber: 2.0 Consensus size: 76
8771242 AAGGCAGAAA
* * **
8771252 TTGAAATACGGAAATTGAAATACCTCGCGTGTGACCTGAGGCTCAACTTGCTGCTCGCAATACGA
1 TTGAAAGACAGAAATTGAAATACCTCGCGTGT-ACCTGAGGCTCAACTACCTGCTCGCAATACGA
8771317 GTTGATTTTTTT
65 GTTGATTTTTTT
*
8771329 TTGAAAGACAGAAATTGAAATACCTCAGCGTGT-CCTGAGGCTCAACTCACCT-CTCGCAATATG
1 TTGAAAGACAGAAATTGAAATACCTC-GCGTGTACCTGAGGCTCAACT-ACCTGCTCGCAATACG
8771392 AGTTGATTTT
64 AGTTGATTTT
8771402 AAAAGTAGAA
Statistics
Matches: 66, Mismatches: 5, Indels: 5
0.87 0.07 0.07
Matches are distributed among these distances:
76 34 0.52
77 26 0.39
78 6 0.09
ACGTcount: A:0.28, C:0.21, G:0.21, T:0.31
Consensus pattern (76 bp):
TTGAAAGACAGAAATTGAAATACCTCGCGTGTACCTGAGGCTCAACTACCTGCTCGCAATACGAG
TTGATTTTTTT
Found at i:8771480 original size:13 final size:13
Alignment explanation
Indices: 8771453--8771486 Score: 50
Period size: 13 Copynumber: 2.5 Consensus size: 13
8771443 GAGTTGATTC
*
8771453 TTGAACAACATAAA
1 TTGAA-AACAGAAA
8771467 TTGAAAACAGAAA
1 TTGAAAACAGAAA
8771480 TTGAAAA
1 TTGAAAA
8771487 TACCTCAGCG
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 14 0.74
14 5 0.26
ACGTcount: A:0.59, C:0.09, G:0.12, T:0.21
Consensus pattern (13 bp):
TTGAAAACAGAAA
Found at i:8771535 original size:136 final size:139
Alignment explanation
Indices: 8771329--8771585 Score: 407
Period size: 139 Copynumber: 1.9 Consensus size: 139
8771319 TGATTTTTTT
*
8771329 TTGAAAGACAGAAATTGAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAG
1 TTGAAAGACAGAAATTGAAATACCTCAGCGTGTACTGAGGCTCAACTCACCTCTCGCAATATGAG
* *
8771394 TTGATTTT-AAAAGTAGAAATTAAAAGG-TTCAACCCACCTCTCGCAATATGAGTTGATTCTTGA
66 CTGATTTTAAAAAGTAGAAATTAAAAGGCTT-AACCCACCTCTCACAATATGAGTTGATTCTTGA
8771457 ACAACATAAA
130 ACAACATAAA
8771467 TTGAAA-ACAGAAATTGAAAATACCTCAGCGTG-ACTG-GGCTCAACTCACCTCTCGCAATATGA
1 TTGAAAGACAGAAATTG-AAATACCTCAGCGTGTACTGAGGCTCAACTCACCTCTCGCAATATGA
*
8771529 GCTGATTTTGAAAAAAGTAGAAATTAAAAGGCTTAACTCACCTCTCACAATATGAGT
65 GCTGATTTT--AAAAAGTAGAAATTAAAAGGCTTAACCCACCTCTCACAATATGAGT
8771586 CAATTTAAAA
Statistics
Matches: 110, Mismatches: 4, Indels: 9
0.89 0.03 0.07
Matches are distributed among these distances:
136 34 0.31
137 13 0.12
138 21 0.19
139 40 0.36
140 2 0.02
ACGTcount: A:0.37, C:0.20, G:0.17, T:0.26
Consensus pattern (139 bp):
TTGAAAGACAGAAATTGAAATACCTCAGCGTGTACTGAGGCTCAACTCACCTCTCGCAATATGAG
CTGATTTTAAAAAGTAGAAATTAAAAGGCTTAACCCACCTCTCACAATATGAGTTGATTCTTGAA
CAACATAAA
Found at i:8771722 original size:71 final size:69
Alignment explanation
Indices: 8771563--8771731 Score: 189
Period size: 71 Copynumber: 2.4 Consensus size: 69
8771553 TAAAAGGCTT
* * * * * *
8771563 AACTCACCTCTCACAATATGAG-TCAATTTAAAACATAAATTAAAAATACCTCAGCGTACCCGAG
1 AACTCACTTCTCGCAATATGAGTTGATTTTAAAACAAAAATTAAAAATACCTCAACGTACCCGAG
*
8771627 GCTC
66 GCCC
* * **
8771631 AACTCACTTCTCGCAATATGAGTTGATTTTGAAAACAAAAATTAAAAATACCTTAACGTGTCTTG
1 AACTCACTTCTCGCAATATGAGTTGATTTT-AAAACAAAAATTAAAAATACCTCAACGT-ACCCG
8771696 AGGCCC
64 AGGCCC
*
8771702 AACTCA-TCTCTTGCAATATGAGTTGATTTT
1 AACTCACT-TCTCGCAATATGAGTTGATTTT
8771732 CCTTGAAAAG
Statistics
Matches: 85, Mismatches: 12, Indels: 5
0.83 0.12 0.05
Matches are distributed among these distances:
68 20 0.24
69 5 0.06
70 26 0.31
71 34 0.40
ACGTcount: A:0.36, C:0.22, G:0.12, T:0.30
Consensus pattern (69 bp):
AACTCACTTCTCGCAATATGAGTTGATTTTAAAACAAAAATTAAAAATACCTCAACGTACCCGAG
GCCC
Found at i:8780033 original size:12 final size:12
Alignment explanation
Indices: 8780013--8780048 Score: 63
Period size: 12 Copynumber: 3.0 Consensus size: 12
8780003 TGGGATATGC
*
8780013 AATGTATGAATG
1 AATGCATGAATG
8780025 AATGCATGAATG
1 AATGCATGAATG
8780037 AATGCATGAATG
1 AATGCATGAATG
8780049 TCAAATGAAT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
12 23 1.00
ACGTcount: A:0.42, C:0.06, G:0.25, T:0.28
Consensus pattern (12 bp):
AATGCATGAATG
Found at i:8781711 original size:27 final size:28
Alignment explanation
Indices: 8781663--8781716 Score: 67
Period size: 27 Copynumber: 2.0 Consensus size: 28
8781653 ATAAATAGGA
* *
8781663 AAAATAATATATTTGGTAATAATAATAT
1 AAAATAATATATATGGTAATAAAAATAT
8781691 AAAATAATA-ATAT-GTACATAAAAATA
1 AAAATAATATATATGGTA-ATAAAAATA
8781717 CATATATATA
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
26 3 0.13
27 11 0.48
28 9 0.39
ACGTcount: A:0.59, C:0.02, G:0.06, T:0.33
Consensus pattern (28 bp):
AAAATAATATATATGGTAATAAAAATAT
Found at i:8782460 original size:26 final size:27
Alignment explanation
Indices: 8782424--8782489 Score: 109
Period size: 26 Copynumber: 2.5 Consensus size: 27
8782414 GGTTTCTTGG
8782424 TTTTTTTTGGGGGGTTAGG-TTTTTCT
1 TTTTTTTTGGGGGGTTAGGTTTTTTCT
8782450 TTTTTTTT-GGGGGTTAGGTTTTTTCT
1 TTTTTTTTGGGGGGTTAGGTTTTTTCT
*
8782476 TTTTTTTCGGGGGG
1 TTTTTTTTGGGGGG
8782490 GGGGGTTAGG
Statistics
Matches: 37, Mismatches: 1, Indels: 3
0.90 0.02 0.07
Matches are distributed among these distances:
25 10 0.27
26 22 0.59
27 5 0.14
ACGTcount: A:0.03, C:0.05, G:0.32, T:0.61
Consensus pattern (27 bp):
TTTTTTTTGGGGGGTTAGGTTTTTTCT
Found at i:8784638 original size:22 final size:22
Alignment explanation
Indices: 8784610--8784666 Score: 64
Period size: 22 Copynumber: 2.6 Consensus size: 22
8784600 CGCGATTCAA
8784610 TTTTTTATATTAAAT-TTTTTT
1 TTTTTTATATTAAATATTTTTT
* *
8784631 GTTTTTTAAATAAAATATTTTTT
1 -TTTTTTATATTAAATATTTTTT
*
8784654 TATTTT-TATTAAA
1 TTTTTTATATTAAA
8784667 AATATTTAAA
Statistics
Matches: 29, Mismatches: 5, Indels: 3
0.78 0.14 0.08
Matches are distributed among these distances:
21 5 0.17
22 18 0.62
23 6 0.21
ACGTcount: A:0.32, C:0.00, G:0.02, T:0.67
Consensus pattern (22 bp):
TTTTTTATATTAAATATTTTTT
Found at i:8784667 original size:22 final size:22
Alignment explanation
Indices: 8784610--8784673 Score: 60
Period size: 23 Copynumber: 2.8 Consensus size: 22
8784600 CGCGATTCAA
*
8784610 TTTTTTATATTAAAT-TTTTTTG
1 TTTTTTAT-TAAAATATTTTTTG
*
8784632 TTTTTTAAATAAAATATTTTTT-
1 TTTTTT-ATTAAAATATTTTTTG
8784654 TATTTTTATTAAAAATATTT
1 T-TTTTTATT-AAAATATTT
8784674 AAATATATAT
Statistics
Matches: 35, Mismatches: 3, Indels: 7
0.78 0.07 0.16
Matches are distributed among these distances:
22 14 0.40
23 21 0.60
ACGTcount: A:0.33, C:0.00, G:0.02, T:0.66
Consensus pattern (22 bp):
TTTTTTATTAAAATATTTTTTG
Found at i:8785174 original size:60 final size:60
Alignment explanation
Indices: 8785062--8785176 Score: 178
Period size: 60 Copynumber: 1.9 Consensus size: 60
8785052 TTTTTATAAC
* * **
8785062 TATTTTAAAATTAATTTGTTAGTAATTTAGGATTATGTTAAAATTTTTTGTGTTTGTAAT
1 TATTTTAAAATTAATTTATTAGTAATTTAGGATTAAGTTAAAATTTACTGTGTTTGTAAT
8785122 TATTTTAAAATTAATTTATTAGTAATTTAGGATTAAGTTATAAA-TTACTGTGTTT
1 TATTTTAAAATTAATTTATTAGTAATTTAGGATTAAGTTA-AAATTTACTGTGTTT
8785177 AGTTTAGTAT
Statistics
Matches: 50, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
60 47 0.94
61 3 0.06
ACGTcount: A:0.34, C:0.01, G:0.12, T:0.53
Consensus pattern (60 bp):
TATTTTAAAATTAATTTATTAGTAATTTAGGATTAAGTTAAAATTTACTGTGTTTGTAAT
Done.