Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A06
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 115140250
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2234201 characters in sequence are not A, C, G, or T
File 302 of 345
Found at i:102327372 original size:7 final size:7
Alignment explanation
Indices: 102327357--102327390 Score: 59
Period size: 7 Copynumber: 4.9 Consensus size: 7
102327347 TCAAGTAATT
*
102327357 CATTGAA
1 CATTTAA
102327364 CATTTAA
1 CATTTAA
102327371 CATTTAA
1 CATTTAA
102327378 CATTTAA
1 CATTTAA
102327385 CATTTA
1 CATTTA
102327391 CTAATATCTT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
7 26 1.00
ACGTcount: A:0.41, C:0.15, G:0.03, T:0.41
Consensus pattern (7 bp):
CATTTAA
Found at i:102333477 original size:11 final size:11
Alignment explanation
Indices: 102333441--102333496 Score: 57
Period size: 11 Copynumber: 5.5 Consensus size: 11
102333431 CATGGTATGT
102333441 ATGATATGCAC
1 ATGATATGCAC
* *
102333452 ATGACATG--T
1 ATGATATGCAC
102333461 ATGATATGCAC
1 ATGATATGCAC
*
102333472 ATGATATG--T
1 ATGATATGCAC
102333481 ATGATATGCAC
1 ATGATATGCAC
102333492 ATGAT
1 ATGAT
102333497 GTATTCATAA
Statistics
Matches: 35, Mismatches: 6, Indels: 8
0.71 0.12 0.16
Matches are distributed among these distances:
9 15 0.43
11 20 0.57
ACGTcount: A:0.36, C:0.12, G:0.20, T:0.32
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:102333496 original size:20 final size:20
Alignment explanation
Indices: 102333430--102333496 Score: 116
Period size: 20 Copynumber: 3.4 Consensus size: 20
102333420 ATTTTGATAA
*
102333430 ACATGGTATGTATGATATGC
1 ACATGATATGTATGATATGC
*
102333450 ACATGACATGTATGATATGC
1 ACATGATATGTATGATATGC
102333470 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
102333490 ACATGAT
1 ACATGAT
102333497 GTATTCATAA
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 44 1.00
ACGTcount: A:0.34, C:0.12, G:0.21, T:0.33
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:102333573 original size:24 final size:24
Alignment explanation
Indices: 102333546--102333783 Score: 329
Period size: 24 Copynumber: 10.0 Consensus size: 24
102333536 GAGAAAGTGG
102333546 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
*
102333570 AAAAGGGCTTACGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
102333594 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
* *
102333618 AAAAGGGCTTACGCCCTAGTTAT-
1 AAAAGGGCTTATGCCCCAGTTATC
* *
102333641 TAAAGGGCTTATGCCCCAGTTATA
1 AAAAGGGCTTATGCCCCAGTTATC
*
102333665 AAAAGGGCTTATGCCCCAATTATC
1 AAAAGGGCTTATGCCCCAGTTATC
*
102333689 AAAAGGGCTTACGCCCCAGTTAT-
1 AAAAGGGCTTATGCCCCAGTTATC
* *
102333712 TAAAGGGCTTATGCCCCAGTTATA
1 AAAAGGGCTTATGCCCCAGTTATC
* *
102333736 AAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATC
*
102333760 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
102333784 ATGATAAAGC
Statistics
Matches: 191, Mismatches: 19, Indels: 7
0.88 0.09 0.03
Matches are distributed among these distances:
23 41 0.21
24 139 0.73
25 11 0.06
ACGTcount: A:0.30, C:0.24, G:0.21, T:0.26
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATC
Found at i:102333663 original size:71 final size:71
Alignment explanation
Indices: 102333546--102333783 Score: 361
Period size: 71 Copynumber: 3.3 Consensus size: 71
102333536 GAGAAAGTGG
* * * *
102333546 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTACGCCCCAGTTATCAAAAGGGCTTATGCCCC
1 AAAAGGGCTTACGCCCCAGTTAT-TAAAGGGCTTATGCCCCAGTTATAAAAAGGGCTTATGCCCC
102333611 AGTTATC
65 AGTTATC
*
102333618 AAAAGGGCTTACGCCCTAGTTATTAAAGGGCTTATGCCCCAGTTATAAAAAGGGCTTATGCCCCA
1 AAAAGGGCTTACGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATAAAAAGGGCTTATGCCCCA
*
102333683 ATTATC
66 GTTATC
*
102333689 AAAAGGGCTTACGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATAAAAAGGGCTTTTGCCCCA
1 AAAAGGGCTTACGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATAAAAAGGGCTTATGCCCCA
*
102333754 GTTATT
66 GTTATC
*
102333760 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTACGCC-CCAGTTAT
102333784 ATGATAAAGC
Statistics
Matches: 153, Mismatches: 11, Indels: 4
0.91 0.07 0.02
Matches are distributed among these distances:
71 121 0.79
72 32 0.21
ACGTcount: A:0.30, C:0.24, G:0.21, T:0.26
Consensus pattern (71 bp):
AAAAGGGCTTACGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATAAAAAGGGCTTATGCCCCA
GTTATC
Found at i:102333669 original size:47 final size:48
Alignment explanation
Indices: 102333546--102333783 Score: 329
Period size: 47 Copynumber: 5.0 Consensus size: 48
102333536 GAGAAAGTGG
102333546 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTACGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTACGCCCCAGTTATC
*
102333594 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTACGCCCTAGTTAT-
1 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTACGCCCCAGTTATC
* * * *
102333641 TAAAGGGCTTATGCCCCAGTTATAAAAAGGGCTTATGCCCCAATTATC
1 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTACGCCCCAGTTATC
* * * *
102333689 AAAAGGGCTTACGCCCCAGTTAT-TAAAGGGCTTATGCCCCAGTTATA
1 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTACGCCCCAGTTATC
* * *
102333736 AAAAGGGCTTTTGCCCCAGTTATTAAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTATCAAAAG-GGCTTACGCC-CCAGTTAT
102333784 ATGATAAAGC
Statistics
Matches: 171, Mismatches: 15, Indels: 7
0.89 0.08 0.04
Matches are distributed among these distances:
47 84 0.49
48 76 0.44
49 11 0.06
ACGTcount: A:0.30, C:0.24, G:0.21, T:0.26
Consensus pattern (48 bp):
AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTACGCCCCAGTTATC
Found at i:102334012 original size:31 final size:31
Alignment explanation
Indices: 102333977--102334040 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
102333967 CGTTTACAGT
*
102333977 AAAGGCTTCGGCCCAGTAATATGAAATTTGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
**
102334008 AAAGGCTTCGGCCCAGTGTTATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
102334039 AA
1 AA
102334041 TATGAAATAT
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.36, C:0.16, G:0.23, T:0.25
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:102334039 original size:7 final size:7
Alignment explanation
Indices: 102334027--102334054 Score: 56
Period size: 7 Copynumber: 4.0 Consensus size: 7
102334017 GGCCCAGTGT
102334027 TATGAAA
1 TATGAAA
102334034 TATGAAA
1 TATGAAA
102334041 TATGAAA
1 TATGAAA
102334048 TATGAAA
1 TATGAAA
102334055 AGGGCTATGG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 21 1.00
ACGTcount: A:0.57, C:0.00, G:0.14, T:0.29
Consensus pattern (7 bp):
TATGAAA
Found at i:102341525 original size:25 final size:25
Alignment explanation
Indices: 102341496--102341543 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
102341486 TTATAACATG
* * *
102341496 AAAATGACCGTTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
102341521 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
102341544 GTTTATGTAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:102341622 original size:11 final size:11
Alignment explanation
Indices: 102341586--102341641 Score: 57
Period size: 11 Copynumber: 5.5 Consensus size: 11
102341576 TAAACATTGT
102341586 ATGATATGCAC
1 ATGATATGCAC
* *
102341597 ATGACATG--T
1 ATGATATGCAC
102341606 ATGATATGCAC
1 ATGATATGCAC
*
102341617 ATGATATG--T
1 ATGATATGCAC
102341626 ATGATATGCAC
1 ATGATATGCAC
102341637 ATGAT
1 ATGAT
102341642 GTATTCATAA
Statistics
Matches: 35, Mismatches: 6, Indels: 8
0.71 0.12 0.16
Matches are distributed among these distances:
9 15 0.43
11 20 0.57
ACGTcount: A:0.36, C:0.12, G:0.20, T:0.32
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:102341641 original size:20 final size:20
Alignment explanation
Indices: 102341583--102341641 Score: 109
Period size: 20 Copynumber: 3.0 Consensus size: 20
102341573 TGATAAACAT
*
102341583 TGTATGATATGCACATGACA
1 TGTATGATATGCACATGATA
102341603 TGTATGATATGCACATGATA
1 TGTATGATATGCACATGATA
102341623 TGTATGATATGCACATGAT
1 TGTATGATATGCACATGAT
102341642 GTATTCATAA
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 38 1.00
ACGTcount: A:0.34, C:0.12, G:0.20, T:0.34
Consensus pattern (20 bp):
TGTATGATATGCACATGATA
Found at i:102341735 original size:23 final size:23
Alignment explanation
Indices: 102341707--102341897 Score: 231
Period size: 23 Copynumber: 8.6 Consensus size: 23
102341697 AAAAGGGTTA
102341707 CCCCAGTTATTAAAGGGCTTATG
1 CCCCAGTTATTAAAGGGCTTATG
102341730 CCCCAGTTATTAAAGGGCTTATG
1 CCCCAGTTATTAAAGGGCTTATG
*
102341753 CCCCAGTTATCAAAAGGGC-T-T-
1 CCCCAGTTAT-TAAAGGGCTTATG
102341774 ---CAGTTATTAAAGGGCTTATG
1 CCCCAGTTATTAAAGGGCTTATG
* *
102341794 CCCCAGTTATAAAAAGGCTTATG
1 CCCCAGTTATTAAAGGGCTTATG
*
102341817 -CCCAGTTATCAAAAGGGCTTA-G
1 CCCCAGTTAT-TAAAGGGCTTATG
102341839 CCCCAGTTATTAAAGGGCTTATG
1 CCCCAGTTATTAAAGGGCTTATG
* *
102341862 --CCAGTTATAAAAAGGGCTTTTG
1 CCCCAGTTAT-TAAAGGGCTTATG
102341884 CCCCAGTTATTAAA
1 CCCCAGTTATTAAA
102341898 AGAGGCTAGG
Statistics
Matches: 146, Mismatches: 9, Indels: 26
0.81 0.05 0.14
Matches are distributed among these distances:
17 7 0.05
18 8 0.05
19 1 0.01
21 8 0.05
22 32 0.22
23 75 0.51
24 15 0.10
ACGTcount: A:0.30, C:0.21, G:0.20, T:0.29
Consensus pattern (23 bp):
CCCCAGTTATTAAAGGGCTTATG
Found at i:102341779 original size:18 final size:17
Alignment explanation
Indices: 102341756--102341790 Score: 52
Period size: 17 Copynumber: 2.0 Consensus size: 17
102341746 GCTTATGCCC
102341756 CAGTTATCAAAAGGGCTT
1 CAGTTAT-AAAAGGGCTT
*
102341774 CAGTTATTAAAGGGCTT
1 CAGTTATAAAAGGGCTT
102341791 ATGCCCCAGT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 9 0.56
18 7 0.44
ACGTcount: A:0.31, C:0.14, G:0.23, T:0.31
Consensus pattern (17 bp):
CAGTTATAAAAGGGCTT
Found at i:102341801 original size:64 final size:65
Alignment explanation
Indices: 102341709--102341904 Score: 274
Period size: 64 Copynumber: 3.0 Consensus size: 65
102341699 AAGGGTTACC
*
102341709 CCAGTTATTAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTT
1 CCAGTTATTAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTT
*
102341774 -CAGTTATTAAAGGGCTTATGCCCCAGTTATAAAAAGGCTTATG-CCCAGTTATCAAAAGGGCTT
1 CCAGTTATTAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTT
* *
102341837 AGCCCCAGTTATTAAAGGGCTTATG--CCAGTTATAAAAAGGGCTTTTGCCCCAGTTATTAAAAG
1 ----CCAGTTATTAAAGGGCTTATGCCCCAGTTAT-AAAAGGGCTTATGCCCCAGTTATCAAAAG
102341900 AGGCT
61 -GGCT
102341905 AGGCCTCCAG
Statistics
Matches: 118, Mismatches: 5, Indels: 12
0.87 0.04 0.09
Matches are distributed among these distances:
63 20 0.17
64 41 0.35
66 8 0.07
67 11 0.09
68 34 0.29
69 4 0.03
ACGTcount: A:0.30, C:0.20, G:0.21, T:0.29
Consensus pattern (65 bp):
CCAGTTATTAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTT
Found at i:102341842 original size:45 final size:43
Alignment explanation
Indices: 102341695--102341904 Score: 225
Period size: 45 Copynumber: 4.8 Consensus size: 43
102341685 GAAAGGATAG
*
102341695 ATAAAAGGG-TTA-CCCCAGTTATTAAAGGGCTTATGCCCCAGTT
1 ATAAAAGGGCTTAGCCCCAGTTATAAAAGGGCTTATG--CCAGTT
*
102341738 ATTAAAGGGCTTATGCCCCAGTTATCAAAAGGGC-T-T--CAGTT
1 ATAAAAGGGCTTA-GCCCCAGTTAT-AAAAGGGCTTATGCCAGTT
* *
102341779 ATTAAAGGGCTTATGCCCCAGTTATAAAAAGGCTTATGCCCAGTT
1 ATAAAAGGGCTTA-GCCCCAGTTATAAAAGGGCTTATG-CCAGTT
*
102341824 ATCAAAAGGGCTTAGCCCCAGTTATTAAAGGGCTTATGCCAGTT
1 AT-AAAAGGGCTTAGCCCCAGTTATAAAAGGGCTTATGCCAGTT
*
102341868 ATAAAAAGGGCTTTTGCCCCAGTTATTAAAAGAGGCT
1 AT-AAAAGGGC-TTAGCCCCAGTTA-TAAAAG-GGCT
102341905 AGGCCTCCAG
Statistics
Matches: 145, Mismatches: 9, Indels: 22
0.82 0.05 0.12
Matches are distributed among these distances:
40 7 0.05
41 31 0.21
42 1 0.01
43 8 0.06
44 19 0.13
45 42 0.29
46 26 0.18
47 11 0.08
ACGTcount: A:0.31, C:0.20, G:0.21, T:0.28
Consensus pattern (43 bp):
ATAAAAGGGCTTAGCCCCAGTTATAAAAGGGCTTATGCCAGTT
Found at i:102344244 original size:27 final size:30
Alignment explanation
Indices: 102344207--102344276 Score: 85
Period size: 30 Copynumber: 2.5 Consensus size: 30
102344197 ATCTCACTGC
102344207 ATTT-AAAATTTAG-T-CTCTACTTTTAAT
1 ATTTAAAAATTTAGTTACTCTACTTTTAAT
* *
102344234 -TTTAAAAATTTAGTTACTTTACTTTTCAT
1 ATTTAAAAATTTAGTTACTCTACTTTTAAT
*
102344263 ATTTAATAATTTAG
1 ATTTAAAAATTTAG
102344277 GTCTAGTTGT
Statistics
Matches: 36, Mismatches: 3, Indels: 5
0.82 0.07 0.11
Matches are distributed among these distances:
26 3 0.08
27 9 0.25
28 1 0.03
29 11 0.31
30 12 0.33
ACGTcount: A:0.34, C:0.09, G:0.04, T:0.53
Consensus pattern (30 bp):
ATTTAAAAATTTAGTTACTCTACTTTTAAT
Found at i:102349655 original size:21 final size:21
Alignment explanation
Indices: 102349625--102349669 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 21
102349615 GAAGGATCAA
*
102349625 ATGCTAGAGTCCCAGAAAAAC
1 ATGCTAGAGTCACAGAAAAAC
* *
102349646 ATGCTGGAGTCACAGAACAAC
1 ATGCTAGAGTCACAGAAAAAC
102349667 ATG
1 ATG
102349670 ATGAGCCAGC
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.40, C:0.22, G:0.22, T:0.16
Consensus pattern (21 bp):
ATGCTAGAGTCACAGAAAAAC
Found at i:102357516 original size:90 final size:89
Alignment explanation
Indices: 102357408--102357706 Score: 268
Period size: 90 Copynumber: 3.3 Consensus size: 89
102357398 ACATACCCGA
102357408 TCTTATCTTCACTGAGCAGGAGTGAAGCAGATCAAATTTTGGCGAGTCTTATCTTCACTGTGTAG
1 TCTTATCTTCACTGAGCAGGAGTGAAGCAGATCAAATTTTGGCGAGTCTTATCTTCACTGTGTAG
*
102357473 GAGTGGAGCAGATTTCAGCCACCAG
66 GAGTGGAGCAGA-TTCAACCACCAG
* ** * * ** *
102357498 TCTTATCTTCACTGAGCAGGAGTGGAGCAGAT----TTCAGCCACCAACCTTATCTTCACTGAGT
1 TCTTATCTTCACTGAGCAGGAGTGAAGCAGATCAAATTTTG--GCGAGTCTTATCTTCACTGTGT
** * * *
102357559 AGGAGTGGAGCAGGCTAAACATACCCG
64 AGGAGTGGAGCAGATTCAAC-CACCAG
* * * *
102357586 ATCCTT-TCTTCACTGAGCAGGACTGAAGCAAATCAAATTTTGGCGAGTCTTATCTCCA-TGTAT
1 -T-CTTATCTTCACTGAGCAGGAGTGAAGCAGATCAAATTTTGGCGAGTCTTATCTTCACTGTGT
* * * *
102357649 CGGCAATGGAGCAGATTCTAATCATCAG
64 AGG-AGTGGAGCAGATTC-AACCACCAG
* *
102357677 CCTTATCTTCACTGAGTAGGAGTGAAGCAG
1 TCTTATCTTCACTGAGCAGGAGTGAAGCAG
102357707 GCTAAGTATA
Statistics
Matches: 158, Mismatches: 39, Indels: 24
0.71 0.18 0.11
Matches are distributed among these distances:
86 3 0.02
87 3 0.02
88 34 0.22
89 28 0.18
90 61 0.39
91 24 0.15
92 2 0.01
93 3 0.02
ACGTcount: A:0.27, C:0.22, G:0.23, T:0.27
Consensus pattern (89 bp):
TCTTATCTTCACTGAGCAGGAGTGAAGCAGATCAAATTTTGGCGAGTCTTATCTTCACTGTGTAG
GAGTGGAGCAGATTCAACCACCAG
Found at i:102357519 original size:44 final size:44
Alignment explanation
Indices: 102357452--102357571 Score: 204
Period size: 44 Copynumber: 2.7 Consensus size: 44
102357442 AATTTTGGCG
*
102357452 AGTCTTATCTTCACTGTGTAGGAGTGGAGCAGATTTCAGCCACC
1 AGTCTTATCTTCACTGAGTAGGAGTGGAGCAGATTTCAGCCACC
*
102357496 AGTCTTATCTTCACTGAGCAGGAGTGGAGCAGATTTCAGCCACC
1 AGTCTTATCTTCACTGAGTAGGAGTGGAGCAGATTTCAGCCACC
**
102357540 AACCTTATCTTCACTGAGTAGGAGTGGAGCAG
1 AGTCTTATCTTCACTGAGTAGGAGTGGAGCAG
102357572 GCTAAACATA
Statistics
Matches: 71, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
44 71 1.00
ACGTcount: A:0.25, C:0.23, G:0.26, T:0.27
Consensus pattern (44 bp):
AGTCTTATCTTCACTGAGTAGGAGTGGAGCAGATTTCAGCCACC
Found at i:102357663 original size:179 final size:179
Alignment explanation
Indices: 102357363--102357706 Score: 496
Period size: 179 Copynumber: 1.9 Consensus size: 179
102357353 ATATCATCAG
* *
102357363 CCTTATCTTCACTTAGCAGGAGTGAAGCGGGCTAAACATACCCGATCTTATCTTCACTGAGCAGG
1 CCTTATCTTCACTGAGCAGGAGTGAAGCAGGCTAAACATACCCGATCTTATCTTCACTGAGCAGG
* * * * * *
102357428 AGTGAAGCAGATCAAATTTTGGCGAGTCTTATCTTCACTGTGTAGGAGTGGAGCAGATT-TCAGC
66 ACTGAAGCAAATCAAATTTTGGCGAGTCTTATCTCCACTGTATAGGAATGGAGCAGATTCT-AAC
* *
102357492 CACCAGTCTTATCTTCACTGAGCAGGAGTGGAGCAGATTTCAGCCACCAA
130 CACCAGCCTTATCTTCACTGAGCAGGAGTGAAGCAGATTTCAGCCACCAA
* *
102357542 CCTTATCTTCACTGAGTAGGAGTGGAGCAGGCTAAACATACCCGATCCTT-TCTTCACTGAGCAG
1 CCTTATCTTCACTGAGCAGGAGTGAAGCAGGCTAAACATACCCGAT-CTTATCTTCACTGAGCAG
*
102357606 GACTGAAGCAAATCAAATTTTGGCGAGTCTTATCTCCA-TGTATCGGCAATGGAGCAGATTCTAA
65 GACTGAAGCAAATCAAATTTTGGCGAGTCTTATCTCCACTGTATAGG-AATGGAGCAGATTCTAA
* * *
102357670 TCATCAGCCTTATCTTCACTGAGTAGGAGTGAAGCAG
129 CCACCAGCCTTATCTTCACTGAGCAGGAGTGAAGCAG
102357707 GCTAAGTATA
Statistics
Matches: 146, Mismatches: 16, Indels: 6
0.87 0.10 0.04
Matches are distributed among these distances:
178 6 0.04
179 136 0.93
180 4 0.03
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Consensus pattern (179 bp):
CCTTATCTTCACTGAGCAGGAGTGAAGCAGGCTAAACATACCCGATCTTATCTTCACTGAGCAGG
ACTGAAGCAAATCAAATTTTGGCGAGTCTTATCTCCACTGTATAGGAATGGAGCAGATTCTAACC
ACCAGCCTTATCTTCACTGAGCAGGAGTGAAGCAGATTTCAGCCACCAA
Found at i:102357706 original size:44 final size:45
Alignment explanation
Indices: 102357355--102357753 Score: 123
Period size: 44 Copynumber: 8.9 Consensus size: 45
102357345 AAAGACAGAT
* **
102357355 ATCAT-CAGCCTTATCTTCACTTAGCAGGAGTGAAGC-G-GGCTA
1 ATCATGCAGCCTTATCTTCACTGAGCAGGAGTGAAGCAGATTCTA
* * * * *
102357397 AACATACCCGATCTTATCTTCACTGAGCAGGAGTGAAGCAGA-TCAA
1 ATCAT-GCAG-CCTTATCTTCACTGAGCAGGAGTGAAGCAGATTCTA
** * * * *
102357443 ATTTTGGCGAGTCTTATCTTCACTGTGTAGGAGTGGAGCAGATT-TCA
1 ATCAT-GC-AGCCTTATCTTCACTGAGCAGGAGTGAAGCAGATTCT-A
** * * *
102357490 GCCA-CCAGTCTTATCTTCACTGAGCAGGAGTGGAGCAGATT-TCA
1 ATCATGCAGCCTTATCTTCACTGAGCAGGAGTGAAGCAGATTCT-A
** * * * * *
102357534 GCCA-CCAACCTTATCTTCACTGAGTAGGAGTGGAGCAG--GCTA
1 ATCATGCAGCCTTATCTTCACTGAGCAGGAGTGAAGCAGATTCTA
* * * * * *
102357576 AACATACCCGATCCTT-TCTTCACTGAGCAGGACTGAAGCA-AATCAA
1 ATCAT--GC-AGCCTTATCTTCACTGAGCAGGAGTGAAGCAGATTCTA
** * * * * *
102357622 ATTTTGGCGAGTCTTATCTCCA-TGTATC-GGCAATGGAGCAGATTCTA
1 ATCAT-GC-AGCCTTATCTTCACTG-AGCAGG-AGTGAAGCAGATTCTA
* *
102357669 ATCAT-CAGCCTTATCTTCACTGAGTAGGAGTGAAGCAG--GCTA
1 ATCATGCAGCCTTATCTTCACTGAGCAGGAGTGAAGCAGATTCTA
* * * *
102357711 AGT-ATAGCAGATCTTATCTTCGCTGAGCAGGAGCGGAGCAGAT
1 A-TCAT-GCAG-CCTTATCTTCACTGAGCAGGAGTGAAGCAGAT
102357754 CGAATTTTGA
Statistics
Matches: 268, Mismatches: 62, Indels: 49
0.71 0.16 0.13
Matches are distributed among these distances:
42 13 0.05
43 2 0.01
44 96 0.36
45 90 0.34
46 57 0.21
47 10 0.04
ACGTcount: A:0.28, C:0.22, G:0.24, T:0.26
Consensus pattern (45 bp):
ATCATGCAGCCTTATCTTCACTGAGCAGGAGTGAAGCAGATTCTA
Found at i:102357884 original size:135 final size:135
Alignment explanation
Indices: 102357543--102357886 Score: 422
Period size: 135 Copynumber: 2.5 Consensus size: 135
102357533 AGCCACCAAC
* * *
102357543 CTTATCTTCACTGAGTAGGAGTGGAGCAGGCTAAACATACCCGATCCTT-TCTTCACTGAGCAGG
1 CTTATCTTCACTGAGTAGGAGTGAAGCAGGCTAAATATACCAGAT-CTTATCTTCACTGAGCAGG
* * * * * * *
102357607 ACTGAAGCAAATCAAATTTTGGCGAGTCTTATCTCCATGTATCGGCAATGGAGCAGATTCTAATC
65 AGTGGAGCAGATCAAATTTTGACGAATCTTATCTCCATGTATCAGCAATGGAGCAGATTCCAATC
*
102357672 ATCAGC
130 ATCAGA
* * *
102357678 CTTATCTTCACTGAGTAGGAGTGAAGCAGGCTAAGTATAGCAGATCTTATCTTCGCTGAGCAGGA
1 CTTATCTTCACTGAGTAGGAGTGAAGCAGGCTAAATATACCAGATCTTATCTTCACTGAGCAGGA
* * * * * *
102357743 GCGGAGCAGATCGAATTTTGATGAATCTTATGTCCCTGTA-CTAGCGATGGAGCAGATTCCAATC
66 GTGGAGCAGATCAAATTTTGACGAATCTTATCTCCATGTATC-AGCAATGGAGCAGATTCCAATC
102357807 ATCAGA
130 ATCAGA
* * * * * *
102357813 CTTATCTTCAATGAGCAGGAGTGAAGCAGGCTAAATATATCAGATCTTATCTCCACTGAACAAGA
1 CTTATCTTCACTGAGTAGGAGTGAAGCAGGCTAAATATACCAGATCTTATCTTCACTGAGCAGGA
102357878 GTGGAGCAG
66 GTGGAGCAG
102357887 GTCAGATACA
Statistics
Matches: 178, Mismatches: 29, Indels: 4
0.84 0.14 0.02
Matches are distributed among these distances:
134 4 0.02
135 174 0.98
ACGTcount: A:0.29, C:0.21, G:0.23, T:0.27
Consensus pattern (135 bp):
CTTATCTTCACTGAGTAGGAGTGAAGCAGGCTAAATATACCAGATCTTATCTTCACTGAGCAGGA
GTGGAGCAGATCAAATTTTGACGAATCTTATCTCCATGTATCAGCAATGGAGCAGATTCCAATCA
TCAGA
Found at i:102366205 original size:20 final size:20
Alignment explanation
Indices: 102366180--102366218 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
102366170 ACAAATTCTA
102366180 TTATTTCAC-ACATTTACAAC
1 TTATTTCACAAC-TTTACAAC
*
102366200 TTATTTTACAACTTTACAA
1 TTATTTCACAACTTTACAA
102366219 AATAGCCATT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 15 0.88
21 2 0.12
ACGTcount: A:0.36, C:0.21, G:0.00, T:0.44
Consensus pattern (20 bp):
TTATTTCACAACTTTACAAC
Found at i:102378757 original size:40 final size:40
Alignment explanation
Indices: 102378707--102378847 Score: 246
Period size: 40 Copynumber: 3.5 Consensus size: 40
102378697 TATGTGCATA
*
102378707 GCATTTGTGCGGGTTATTATAACCGGGTTAAGTCCCGAAG
1 GCATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCGAAG
102378747 GCATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCGAAG
1 GCATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCGAAG
*
102378787 GCATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCAAAG
1 GCATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCGAAG
* *
102378827 GCATTCGTGCTGGTTGTTATA
1 GCATTCGTGCGGGTTATTATA
102378848 TTCGAGACAA
Statistics
Matches: 97, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
40 97 1.00
ACGTcount: A:0.22, C:0.18, G:0.29, T:0.30
Consensus pattern (40 bp):
GCATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCGAAG
Found at i:102378865 original size:80 final size:80
Alignment explanation
Indices: 102378707--102378865 Score: 219
Period size: 80 Copynumber: 2.0 Consensus size: 80
102378697 TATGTGCATA
* *
102378707 GCATTTGTGCGGGTTATTATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTTATTATAACCG
1 GCATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCAAAGGCATTCGTGCGGGTTATTATAACCG
* ** *
102378772 GGTTAAGTCCCGAAG
66 AGACAAATCCCGAAG
* * **
102378787 GCATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCAAAGGCATTCGTGCTGGTTGTTATATTCG
1 GCATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCAAAGGCATTCGTGCGGGTTATTATAACCG
*
102378852 AGACAAATTCCGAA
66 AGACAAATCCCGAA
102378866 AGTATTTATG
Statistics
Matches: 68, Mismatches: 11, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
80 68 1.00
ACGTcount: A:0.24, C:0.19, G:0.28, T:0.30
Consensus pattern (80 bp):
GCATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCAAAGGCATTCGTGCGGGTTATTATAACCG
AGACAAATCCCGAAG
Found at i:102385610 original size:31 final size:31
Alignment explanation
Indices: 102385572--102385630 Score: 100
Period size: 31 Copynumber: 1.9 Consensus size: 31
102385562 TCATACTTCA
102385572 TATTTCATAACACTGGGCCGAAGCCTTTTTG
1 TATTTCATAACACTGGGCCGAAGCCTTTTTG
**
102385603 TATTTCATATTACTGGGCCGAAGCCTTT
1 TATTTCATAACACTGGGCCGAAGCCTTT
102385631 ACTGCAAACG
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
31 26 1.00
ACGTcount: A:0.22, C:0.22, G:0.19, T:0.37
Consensus pattern (31 bp):
TATTTCATAACACTGGGCCGAAGCCTTTTTG
Found at i:102385988 original size:24 final size:24
Alignment explanation
Indices: 102385836--102385987 Score: 218
Period size: 24 Copynumber: 6.4 Consensus size: 24
102385826 CTAGAGGCCT
* *
102385836 AGCCTCTTTTAATAATTGGGACA-A
1 AGCC-CTTTTAATAACTGGGGCATA
102385860 AGCCCTTTTAATAACTGGGGCATA
1 AGCCCTTTTAATAACTGGGGCATA
* *
102385884 AGTCC-TTTAATAACCGGGGCATA
1 AGCCCTTTTAATAACTGGGGCATA
102385907 AGCCCTTTTAATAACTGGGGCATA
1 AGCCCTTTTAATAACTGGGGCATA
*
102385931 AGCCCTTTTGATAACTGGGGCATA
1 AGCCCTTTTAATAACTGGGGCATA
* *
102385955 AGCCCTTTTGATAATTGGGGCATA
1 AGCCCTTTTAATAACTGGGGCATA
102385979 AGCCCTTTT
1 AGCCCTTTT
102385988 GCACTTCCTC
Statistics
Matches: 118, Mismatches: 8, Indels: 4
0.91 0.06 0.03
Matches are distributed among these distances:
23 37 0.31
24 81 0.69
ACGTcount: A:0.28, C:0.20, G:0.21, T:0.31
Consensus pattern (24 bp):
AGCCCTTTTAATAACTGGGGCATA
Found at i:102386062 original size:20 final size:20
Alignment explanation
Indices: 102386037--102386103 Score: 100
Period size: 20 Copynumber: 3.4 Consensus size: 20
102386027 TTATGAATAC
102386037 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
102386057 ATCATGTGCATAGT-ATACAT
1 ATCATGTGCATA-TCATACAT
*
102386077 GTCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
102386097 ACCATGT
1 ATCATGT
102386104 TTACTAAAAT
Statistics
Matches: 42, Mismatches: 3, Indels: 4
0.86 0.06 0.08
Matches are distributed among these distances:
19 1 0.02
20 40 0.95
21 1 0.02
ACGTcount: A:0.33, C:0.19, G:0.13, T:0.34
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:102388649 original size:32 final size:32
Alignment explanation
Indices: 102388611--102388677 Score: 134
Period size: 32 Copynumber: 2.1 Consensus size: 32
102388601 ATTCTGATAA
102388611 GAAAATTTTACCGATTATATGTTTAATTAAGG
1 GAAAATTTTACCGATTATATGTTTAATTAAGG
102388643 GAAAATTTTACCGATTATATGTTTAATTAAGG
1 GAAAATTTTACCGATTATATGTTTAATTAAGG
102388675 GAA
1 GAA
102388678 GGACCAAATT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 35 1.00
ACGTcount: A:0.39, C:0.06, G:0.16, T:0.39
Consensus pattern (32 bp):
GAAAATTTTACCGATTATATGTTTAATTAAGG
Found at i:102389753 original size:25 final size:26
Alignment explanation
Indices: 102389725--102389773 Score: 64
Period size: 25 Copynumber: 1.9 Consensus size: 26
102389715 ATACTTCACA
* *
102389725 TATATTATTCAAATCAA-TCTATTAG
1 TATACTATTCAAACCAATTCTATTAG
*
102389750 TATACTATTTAAACCAATTCTATT
1 TATACTATTCAAACCAATTCTATT
102389774 TTTCACACTA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
25 14 0.70
26 6 0.30
ACGTcount: A:0.39, C:0.14, G:0.02, T:0.45
Consensus pattern (26 bp):
TATACTATTCAAACCAATTCTATTAG
Found at i:102391441 original size:16 final size:17
Alignment explanation
Indices: 102391411--102391451 Score: 50
Period size: 17 Copynumber: 2.5 Consensus size: 17
102391401 TCCTTCTCTG
102391411 TTTCGTTTTCAATTCTA
1 TTTCGTTTTCAATTCTA
*
102391428 TTTCTTTTTC-ATTCT-
1 TTTCGTTTTCAATTCTA
*
102391443 TTTTGTTTT
1 TTTCGTTTT
102391452 GTTTTATTAT
Statistics
Matches: 21, Mismatches: 3, Indels: 2
0.81 0.12 0.08
Matches are distributed among these distances:
15 7 0.33
16 5 0.24
17 9 0.43
ACGTcount: A:0.10, C:0.15, G:0.05, T:0.71
Consensus pattern (17 bp):
TTTCGTTTTCAATTCTA
Found at i:102395768 original size:17 final size:18
Alignment explanation
Indices: 102395733--102395769 Score: 58
Period size: 17 Copynumber: 2.1 Consensus size: 18
102395723 AAATCCATGC
*
102395733 TCTAAACCTCCTTAAAAT
1 TCTAAACCTCCTCAAAAT
102395751 TCTAAACCT-CTCAAAAT
1 TCTAAACCTCCTCAAAAT
102395768 TC
1 TC
102395770 CTTCAAATCC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 9 0.50
18 9 0.50
ACGTcount: A:0.38, C:0.30, G:0.00, T:0.32
Consensus pattern (18 bp):
TCTAAACCTCCTCAAAAT
Found at i:102397496 original size:44 final size:44
Alignment explanation
Indices: 102397423--102397532 Score: 139
Period size: 44 Copynumber: 2.5 Consensus size: 44
102397413 CATGGTATTG
* ** * * *
102397423 CAACATTGGTACATAGTACTTACTGAATATAAATGGCACATAGC
1 CAACATTGGTACATAGTACCTACAAAATATAAATGACAAAAAGC
*
102397467 CAATATTGGTACATAGTACCTACAAAATATAAATGACAAAAAGC
1 CAACATTGGTACATAGTACCTACAAAATATAAATGACAAAAAGC
**
102397511 CAACACCGGTACATAGTACCTA
1 CAACATTGGTACATAGTACCTA
102397533 TTACATATAA
Statistics
Matches: 56, Mismatches: 10, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
44 56 1.00
ACGTcount: A:0.43, C:0.20, G:0.14, T:0.24
Consensus pattern (44 bp):
CAACATTGGTACATAGTACCTACAAAATATAAATGACAAAAAGC
Found at i:102397541 original size:44 final size:43
Alignment explanation
Indices: 102397430--102397544 Score: 113
Period size: 44 Copynumber: 2.6 Consensus size: 43
102397420 TTGCAACATT
* * * * * * **
102397430 GGTACATAGTACTTACTGAATATAAATGGCACATAGCCAATATT
1 GGTACATAGTACCTA-TAAATATAAATGACAAAAAGCCAACACC
*
102397474 GGTACATAGTACCTACAAAATATAAATGACAAAAAGCCAACACC
1 GGTACATAGTACCTA-TAAATATAAATGACAAAAAGCCAACACC
*
102397518 GGTACATAGTACCTATTACATATAAAT
1 GGTACATAGTACCTA-TAAATATAAAT
102397545 CCTAATGACA
Statistics
Matches: 59, Mismatches: 12, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
44 59 1.00
ACGTcount: A:0.43, C:0.18, G:0.13, T:0.25
Consensus pattern (43 bp):
GGTACATAGTACCTATAAATATAAATGACAAAAAGCCAACACC
Found at i:102398035 original size:13 final size:13
Alignment explanation
Indices: 102398017--102398041 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
102398007 ATAGACATTT
102398017 TAAACTTTTACCC
1 TAAACTTTTACCC
102398030 TAAACTTTTACC
1 TAAACTTTTACC
102398042 TTTTATTCAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.28, G:0.00, T:0.40
Consensus pattern (13 bp):
TAAACTTTTACCC
Found at i:102402319 original size:13 final size:14
Alignment explanation
Indices: 102402303--102402338 Score: 51
Period size: 13 Copynumber: 2.8 Consensus size: 14
102402293 CAATCTCATA
102402303 TCTCAATTTCAA-T
1 TCTCAATTTCAATT
102402316 TCTCAA-TTCAATT
1 TCTCAATTTCAATT
102402329 TCTC-ATTTCA
1 TCTCAATTTCA
102402339 TTCCAATAGC
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
12 6 0.29
13 15 0.71
ACGTcount: A:0.28, C:0.25, G:0.00, T:0.47
Consensus pattern (14 bp):
TCTCAATTTCAATT
Found at i:102402328 original size:18 final size:19
Alignment explanation
Indices: 102402290--102402330 Score: 59
Period size: 18 Copynumber: 2.2 Consensus size: 19
102402280 TGGTTCATGT
102402290 TTTCAATCTCATATCTCAA
1 TTTCAATCTCATATCTCAA
102402309 TTTCAATTCTCA-AT-TCAA
1 TTTCAA-TCTCATATCTCAA
102402327 TTTC
1 TTTC
102402331 TCATTTCATT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
18 8 0.38
19 8 0.38
20 5 0.24
ACGTcount: A:0.29, C:0.24, G:0.00, T:0.46
Consensus pattern (19 bp):
TTTCAATCTCATATCTCAA
Found at i:102402466 original size:23 final size:23
Alignment explanation
Indices: 102402436--102402501 Score: 123
Period size: 23 Copynumber: 2.8 Consensus size: 23
102402426 GCGGATTCCT
102402436 CCCAAACACACCAGAATATCCAA
1 CCCAAACACACCAGAATATCCAA
102402459 CCCAAACACACCAGAATATCCAA
1 CCCAAACACACCAGAATATCCAA
102402482 CCCAAACACACCCAGAATAT
1 CCCAAACACA-CCAGAATAT
102402502 TATAAACCCT
Statistics
Matches: 42, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
23 33 0.79
24 9 0.21
ACGTcount: A:0.47, C:0.39, G:0.05, T:0.09
Consensus pattern (23 bp):
CCCAAACACACCAGAATATCCAA
Found at i:102402995 original size:15 final size:15
Alignment explanation
Indices: 102402975--102403021 Score: 67
Period size: 15 Copynumber: 3.1 Consensus size: 15
102402965 TAATATATAT
102402975 TTCAATCAATATAAA
1 TTCAATCAATATAAA
* * *
102402990 TTCAATCAAAATGAT
1 TTCAATCAATATAAA
102403005 TTCAATCAATATAAA
1 TTCAATCAATATAAA
102403020 TT
1 TT
102403022 TGATAAATTC
Statistics
Matches: 26, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
15 26 1.00
ACGTcount: A:0.49, C:0.13, G:0.02, T:0.36
Consensus pattern (15 bp):
TTCAATCAATATAAA
Found at i:102403888 original size:19 final size:19
Alignment explanation
Indices: 102403864--102403902 Score: 69
Period size: 19 Copynumber: 2.1 Consensus size: 19
102403854 AATACTTATT
*
102403864 TATTATTTATACATGTGTA
1 TATTATTAATACATGTGTA
102403883 TATTATTAATACATGTGTA
1 TATTATTAATACATGTGTA
102403902 T
1 T
102403903 CTATTTAAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.33, C:0.05, G:0.10, T:0.51
Consensus pattern (19 bp):
TATTATTAATACATGTGTA
Found at i:102403910 original size:19 final size:19
Alignment explanation
Indices: 102403867--102403910 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 19
102403857 ACTTATTTAT
102403867 TATTT-ATACATGTGTATA
1 TATTTAATACATGTGTATA
*
102403885 T-TATTAATACATGTGTATC
1 TAT-TTAATACATGTGTATA
102403904 TATTTAA
1 TATTTAA
102403911 AACCATACAT
Statistics
Matches: 22, Mismatches: 1, Indels: 5
0.79 0.04 0.18
Matches are distributed among these distances:
17 1 0.05
18 3 0.14
19 17 0.77
20 1 0.05
ACGTcount: A:0.34, C:0.07, G:0.09, T:0.50
Consensus pattern (19 bp):
TATTTAATACATGTGTATA
Found at i:102420061 original size:29 final size:29
Alignment explanation
Indices: 102420019--102420078 Score: 120
Period size: 29 Copynumber: 2.1 Consensus size: 29
102420009 AATTTAAGAG
102420019 TAAAAAGTTGAATCTCATTAAAAGGACTC
1 TAAAAAGTTGAATCTCATTAAAAGGACTC
102420048 TAAAAAGTTGAATCTCATTAAAAGGACTC
1 TAAAAAGTTGAATCTCATTAAAAGGACTC
102420077 TA
1 TA
102420079 TTAAAGAGAT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 31 1.00
ACGTcount: A:0.45, C:0.13, G:0.13, T:0.28
Consensus pattern (29 bp):
TAAAAAGTTGAATCTCATTAAAAGGACTC
Found at i:102430681 original size:40 final size:40
Alignment explanation
Indices: 102430623--102430760 Score: 110
Period size: 40 Copynumber: 3.6 Consensus size: 40
102430613 TAGAAGTTGC
*
102430623 GCCCAG-TGCTAGTCGGATAAACTGACAAAATAATTATTGA
1 GCCCAGCT-CTAGTTGGATAAACTGACAAAATAATTATTGA
* * *
102430663 GCCCAGCTTTAGTTGGATAAAC---CAACGAT-A-T-TTGC
1 GCCCAGCTCTAGTTGGATAAACTGACAA-AATAATTATTGA
* * * * ** *
102430698 GTCCAACGCTAGTTGGATAAACCGATGAAATAATTAGTGA
1 GCCCAGCTCTAGTTGGATAAACTGACAAAATAATTATTGA
102430738 GCCCAGCTCTAGTTGGATAAACT
1 GCCCAGCTCTAGTTGGATAAACT
102430761 AACGATATTT
Statistics
Matches: 73, Mismatches: 17, Indels: 16
0.69 0.16 0.15
Matches are distributed among these distances:
35 21 0.29
36 1 0.01
37 6 0.08
38 4 0.05
39 1 0.01
40 39 0.53
41 1 0.01
ACGTcount: A:0.33, C:0.20, G:0.21, T:0.26
Consensus pattern (40 bp):
GCCCAGCTCTAGTTGGATAAACTGACAAAATAATTATTGA
Found at i:102430709 original size:75 final size:75
Alignment explanation
Indices: 102430630--102430795 Score: 235
Period size: 75 Copynumber: 2.2 Consensus size: 75
102430620 TGCGCCCAGT
* *
102430630 GCTAGTCGGATAAACTGACAAAATAATTATTGAGCCCAGCTTTAGTTGGATAAACCAACGATATT
1 GCTAGTCGGATAAACTGACAAAATAATTAGTGAGCCCAGCTCTAGTTGGATAAACCAACGATATT
*
102430695 TGCGTCC-AAC
66 TGC-ACCTAAC
* * ** *
102430705 GCTAGTTGGATAAACCGATGAAATAATTAGTGAGCCCAGCTCTAGTTGGATAAACTAACGATATT
1 GCTAGTCGGATAAACTGACAAAATAATTAGTGAGCCCAGCTCTAGTTGGATAAACCAACGATATT
*
102430770 TGCACCTAGC
66 TGCACCTAAC
102430780 GCTAGTCGGATAAACT
1 GCTAGTCGGATAAACT
102430796 AACGAATGTG
Statistics
Matches: 79, Mismatches: 11, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
74 2 0.03
75 77 0.97
ACGTcount: A:0.34, C:0.19, G:0.20, T:0.27
Consensus pattern (75 bp):
GCTAGTCGGATAAACTGACAAAATAATTAGTGAGCCCAGCTCTAGTTGGATAAACCAACGATATT
TGCACCTAAC
Found at i:102430718 original size:35 final size:35
Alignment explanation
Indices: 102430672--102430853 Score: 111
Period size: 35 Copynumber: 5.1 Consensus size: 35
102430662 AGCCCAGCTT
* *
102430672 TAGTTGGATAAACCAACGATATTTGCGTCCAACGC
1 TAGTTGGATAAACCAACGATATTTGCGACCAGCGC
* * * * *
102430707 TAGTTGGATAAACCGATGAAATAATTAGTGAGCCCAGCTC
1 TAGTTGGATAAACCAACG--AT-ATT--TGCGACCAGCGC
*
102430747 TAGTTGGATAAACTAACGATATTTGC-ACCTAGCGC
1 TAGTTGGATAAACCAACGATATTTGCGACC-AGCGC
* * * * * *
102430782 TAGTCGGATAAACTAACGA-ATGTGTGCCCAGCAC
1 TAGTTGGATAAACCAACGATATTTGCGACCAGCGC
* ** *
102430816 TAGTTAGATAAACTGACGA-AGTTGC-ATCCAGCGC
1 TAGTTGGATAAACCAACGATATTTGCGA-CCAGCGC
102430850 TAGT
1 TAGT
102430854 CGAACAAATT
Statistics
Matches: 114, Mismatches: 25, Indels: 17
0.73 0.16 0.11
Matches are distributed among these distances:
34 39 0.34
35 42 0.37
37 5 0.04
38 5 0.04
40 23 0.20
ACGTcount: A:0.32, C:0.20, G:0.22, T:0.25
Consensus pattern (35 bp):
TAGTTGGATAAACCAACGATATTTGCGACCAGCGC
Found at i:102430847 original size:34 final size:33
Alignment explanation
Indices: 102430740--102430853 Score: 122
Period size: 34 Copynumber: 3.3 Consensus size: 33
102430730 ATTAGTGAGC
* *
102430740 CCAGCTCTAGTTGGATAAACTAACGATATTTGCA
1 CCAGCGCTAGTTGGATAAACTAACGA-AGTTGCA
*
102430774 CCTAGCGCTAGTCGGATAAACTAACGAATGTGTGC-
1 CC-AGCGCTAGTTGGATAAACTAACGAA-GT-TGCA
* * *
102430809 CCAGCACTAGTTAGATAAACTGACGAAGTTGCA
1 CCAGCGCTAGTTGGATAAACTAACGAAGTTGCA
102430842 TCCAGCGCTAGT
1 -CCAGCGCTAGT
102430854 CGAACAAATT
Statistics
Matches: 67, Mismatches: 8, Indels: 10
0.79 0.09 0.12
Matches are distributed among these distances:
32 3 0.04
33 2 0.03
34 34 0.51
35 25 0.37
36 3 0.04
ACGTcount: A:0.31, C:0.23, G:0.22, T:0.25
Consensus pattern (33 bp):
CCAGCGCTAGTTGGATAAACTAACGAAGTTGCA
Found at i:102431819 original size:3 final size:3
Alignment explanation
Indices: 102431813--102431843 Score: 55
Period size: 3 Copynumber: 10.7 Consensus size: 3
102431803 CATCATCATC
102431813 ATT ATT ATT ATT ATT ATT ATT ATT ATT -TT AT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
102431844 AACATAATTA
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
2 2 0.07
3 25 0.93
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
ATT
Found at i:102433389 original size:25 final size:25
Alignment explanation
Indices: 102433309--102433391 Score: 94
Period size: 25 Copynumber: 3.3 Consensus size: 25
102433299 CATAGCTCTT
**
102433309 ATGAGCTTCCCGGTACTCAGCTCGC
1 ATGAGCTTCCCAATACTCAGCTCGC
* *
102433334 ATGAGCTTCCCAATACTCAACTCAC
1 ATGAGCTTCCCAATACTCAGCTCGC
* * *
102433359 ATGAGCTTCCCATTACTTAGCTCGG
1 ATGAGCTTCCCAATACTCAGCTCGC
*
102433384 AAGAGCTT
1 ATGAGCTT
102433392 ACTGTTTACA
Statistics
Matches: 48, Mismatches: 10, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 48 1.00
ACGTcount: A:0.24, C:0.31, G:0.18, T:0.27
Consensus pattern (25 bp):
ATGAGCTTCCCAATACTCAGCTCGC
Found at i:102438218 original size:37 final size:36
Alignment explanation
Indices: 102438167--102438236 Score: 88
Period size: 37 Copynumber: 1.9 Consensus size: 36
102438157 ATTTCAAAAA
* *
102438167 TAATATTATTTTAATAGT-TTAATATTAAATTAAATT
1 TAATATTATCTTAATAATATT-ATATTAAATTAAATT
*
102438203 TAATACTTATCTTAATAATATTATATTAATTTAA
1 TAATA-TTATCTTAATAATATTATATTAAATTAA
102438237 TGTTAAAGTG
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
36 5 0.17
37 22 0.76
38 2 0.07
ACGTcount: A:0.44, C:0.03, G:0.01, T:0.51
Consensus pattern (36 bp):
TAATATTATCTTAATAATATTATATTAAATTAAATT
Found at i:102440131 original size:14 final size:14
Alignment explanation
Indices: 102440112--102440139 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
102440102 TAGATTAGAG
102440112 TTTGCCTATAAATA
1 TTTGCCTATAAATA
102440126 TTTGCCTATAAATA
1 TTTGCCTATAAATA
102440140 AGACAACCCG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.36, C:0.14, G:0.07, T:0.43
Consensus pattern (14 bp):
TTTGCCTATAAATA
Found at i:102447765 original size:8 final size:7
Alignment explanation
Indices: 102447737--102447762 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
102447727 TACTTCTTTC
102447737 AAAAATA
1 AAAAATA
102447744 AAAAATA
1 AAAAATA
102447751 AAAAATA
1 AAAAATA
102447758 AAAAA
1 AAAAA
102447763 ATATTTTCAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.88, C:0.00, G:0.00, T:0.12
Consensus pattern (7 bp):
AAAAATA
Found at i:102450132 original size:29 final size:29
Alignment explanation
Indices: 102450100--102450158 Score: 118
Period size: 29 Copynumber: 2.0 Consensus size: 29
102450090 GTTTCTAATG
102450100 ATGCCATAGCTTCTTTCAGCCATGGTCTT
1 ATGCCATAGCTTCTTTCAGCCATGGTCTT
102450129 ATGCCATAGCTTCTTTCAGCCATGGTCTT
1 ATGCCATAGCTTCTTTCAGCCATGGTCTT
102450158 A
1 A
102450159 CTCATTTATA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 30 1.00
ACGTcount: A:0.19, C:0.27, G:0.17, T:0.37
Consensus pattern (29 bp):
ATGCCATAGCTTCTTTCAGCCATGGTCTT
Found at i:102451441 original size:29 final size:29
Alignment explanation
Indices: 102451408--102451467 Score: 77
Period size: 29 Copynumber: 2.1 Consensus size: 29
102451398 ATTTAGAATT
* *
102451408 TTCTTTGTA-ATTTAGTTTTTAGTTTTCAG
1 TTCTTTGTAGACTTAGGTTTTA-TTTTCAG
*
102451437 TTCTTTTTAGACTTAGGTTTTATTTTCAG
1 TTCTTTGTAGACTTAGGTTTTATTTTCAG
102451466 TT
1 TT
102451468 ATTTTCATTC
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
29 17 0.63
30 10 0.37
ACGTcount: A:0.17, C:0.08, G:0.13, T:0.62
Consensus pattern (29 bp):
TTCTTTGTAGACTTAGGTTTTATTTTCAG
Found at i:102456118 original size:39 final size:38
Alignment explanation
Indices: 102456062--102456161 Score: 128
Period size: 39 Copynumber: 2.6 Consensus size: 38
102456052 TGAATATAAT
* * * *
102456062 AATTATAATTACCATAATTATAATAATGTTTGATCAAAA
1 AATTACAATTACAATAATTATAATAATATTCGATC-AAA
* *
102456101 AATTACAGTTACAATAATTATAATAATATTCGATCATA
1 AATTACAATTACAATAATTATAATAATATTCGATCAAA
*
102456139 AATTATAATTACAATAATTATAA
1 AATTACAATTACAATAATTATAA
102456162 CAAGTATTTC
Statistics
Matches: 53, Mismatches: 8, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
38 23 0.43
39 30 0.57
ACGTcount: A:0.50, C:0.08, G:0.04, T:0.38
Consensus pattern (38 bp):
AATTACAATTACAATAATTATAATAATATTCGATCAAA
Found at i:102457673 original size:30 final size:30
Alignment explanation
Indices: 102457639--102457698 Score: 111
Period size: 30 Copynumber: 2.0 Consensus size: 30
102457629 AGAAGGATTA
*
102457639 ATTGAACGACACAAGCATAAGATGTGGGTT
1 ATTGAACGACAAAAGCATAAGATGTGGGTT
102457669 ATTGAACGACAAAAGCATAAGATGTGGGTT
1 ATTGAACGACAAAAGCATAAGATGTGGGTT
102457699 GAATATATAA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.38, C:0.12, G:0.27, T:0.23
Consensus pattern (30 bp):
ATTGAACGACAAAAGCATAAGATGTGGGTT
Found at i:102462782 original size:33 final size:33
Alignment explanation
Indices: 102462745--102462812 Score: 118
Period size: 33 Copynumber: 2.1 Consensus size: 33
102462735 AATCTCATAT
*
102462745 TTATCATAGCCTCTTTTCAAGCAGAATAATTGA
1 TTATCATAGCCTCTTTCCAAGCAGAATAATTGA
*
102462778 TTATCATAGCCTCTTTCCAAGTAGAATAATTGA
1 TTATCATAGCCTCTTTCCAAGCAGAATAATTGA
102462811 TT
1 TT
102462813 CCAGCAAGAT
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
33 33 1.00
ACGTcount: A:0.32, C:0.18, G:0.12, T:0.38
Consensus pattern (33 bp):
TTATCATAGCCTCTTTCCAAGCAGAATAATTGA
Found at i:102466063 original size:26 final size:24
Alignment explanation
Indices: 102466009--102466057 Score: 64
Period size: 26 Copynumber: 2.0 Consensus size: 24
102465999 GGTTTCAATT
*
102466009 AAAT-AATATTAAAAGTTTATAAA
1 AAATAAATATTAAAAATTTATAAA
102466032 AAATAAATATATAAAAATCTTATAAA
1 AAATAAATAT-TAAAAAT-TTATAAA
102466058 CCATAATTGT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
23 4 0.18
24 5 0.23
25 6 0.27
26 7 0.32
ACGTcount: A:0.63, C:0.02, G:0.02, T:0.33
Consensus pattern (24 bp):
AAATAAATATTAAAAATTTATAAA
Found at i:102469098 original size:27 final size:27
Alignment explanation
Indices: 102469060--102469113 Score: 81
Period size: 27 Copynumber: 2.0 Consensus size: 27
102469050 TCATACAACC
*
102469060 CATGTAATATTAATTTAACATTCAATT
1 CATGTAACATTAATTTAACATTCAATT
**
102469087 CATGTAACATTAATTTGCCATTCAATT
1 CATGTAACATTAATTTAACATTCAATT
102469114 TCACATGACA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.37, C:0.15, G:0.06, T:0.43
Consensus pattern (27 bp):
CATGTAACATTAATTTAACATTCAATT
Found at i:102474026 original size:40 final size:40
Alignment explanation
Indices: 102473977--102474094 Score: 191
Period size: 40 Copynumber: 3.0 Consensus size: 40
102473967 CACAAGAAAG
* *
102473977 AAGCCCATAAGAGCTAATCCAACCGAAACACGCCAAACAA
1 AAGCTCATAAGAGCTGATCCAACCGAAACACGCCAAACAA
* *
102474017 AAGCTCATAAGAGCTGATCCAACCGAAATACGCCAAACAG
1 AAGCTCATAAGAGCTGATCCAACCGAAACACGCCAAACAA
*
102474057 AAGCTCATAAGAGCTGATCCAACCAAAACACGCCAAAC
1 AAGCTCATAAGAGCTGATCCAACCGAAACACGCCAAAC
102474095 GGACAGTATA
Statistics
Matches: 72, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
40 72 1.00
ACGTcount: A:0.45, C:0.31, G:0.14, T:0.10
Consensus pattern (40 bp):
AAGCTCATAAGAGCTGATCCAACCGAAACACGCCAAACAA
Found at i:102476043 original size:33 final size:33
Alignment explanation
Indices: 102476006--102476094 Score: 106
Period size: 33 Copynumber: 2.7 Consensus size: 33
102475996 GCAGACTTTA
* * * *
102476006 TCTGTTCTATATTTAGTGTCCCAATCCACTATC
1 TCTGTTTTATGTTTACTGTCCCAATCAACTATC
* * *
102476039 TCTGTTTTGTGTTTACTATCCCAATGAACTATC
1 TCTGTTTTATGTTTACTGTCCCAATCAACTATC
*
102476072 TTTGTTTTATGTTTACTGTCCCA
1 TCTGTTTTATGTTTACTGTCCCA
102476095 GCAAACTTTC
Statistics
Matches: 46, Mismatches: 10, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
33 46 1.00
ACGTcount: A:0.19, C:0.22, G:0.11, T:0.47
Consensus pattern (33 bp):
TCTGTTTTATGTTTACTGTCCCAATCAACTATC
Found at i:102476254 original size:7 final size:7
Alignment explanation
Indices: 102476244--102476279 Score: 54
Period size: 7 Copynumber: 5.1 Consensus size: 7
102476234 CATCTATAGT
*
102476244 CTTACAC
1 CTTATAC
102476251 CTTATAC
1 CTTATAC
102476258 CTTATAC
1 CTTATAC
102476265 CTTATAC
1 CTTATAC
*
102476272 CTTGTAC
1 CTTATAC
102476279 C
1 C
102476280 ATGCTTCCAT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
7 27 1.00
ACGTcount: A:0.25, C:0.33, G:0.03, T:0.39
Consensus pattern (7 bp):
CTTATAC
Found at i:102477266 original size:35 final size:35
Alignment explanation
Indices: 102477220--102477287 Score: 118
Period size: 35 Copynumber: 1.9 Consensus size: 35
102477210 TTCTTTCAAC
*
102477220 TGAGGTCGCTAACAGGCGATCTCTTTTAATTTAAT
1 TGAGGTCGCTAACAGACGATCTCTTTTAATTTAAT
*
102477255 TGAGGTCGCTAACAGACTATCTCTTTTAATTTA
1 TGAGGTCGCTAACAGACGATCTCTTTTAATTTA
102477288 GTCCTTCAAT
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
35 31 1.00
ACGTcount: A:0.26, C:0.18, G:0.18, T:0.38
Consensus pattern (35 bp):
TGAGGTCGCTAACAGACGATCTCTTTTAATTTAAT
Found at i:102481181 original size:61 final size:63
Alignment explanation
Indices: 102481109--102481227 Score: 147
Period size: 64 Copynumber: 1.9 Consensus size: 63
102481099 ATCATTTTGG
*
102481109 ATTTTAAAAAAAATTATA-ATTTAGAATTTTT-AGA-ATTTTTAATTTTTTG-AATATATATAAA
1 ATTTTAAAAAAAA--ATAGATTTAGAATTTTTAAGATATTTTGAATTTTTTGTAATATATATAAA
* *
102481170 ATTTTAGAAAAAAATAGATTTTGAATTTTTGAAGATTATTTTGAATTTTTTGTAATAT
1 ATTTTAAAAAAAAATAGATTTAGAATTTTT-AAGA-TATTTTGAATTTTTTGTAATAT
102481228 TTTTATGGGA
Statistics
Matches: 49, Mismatches: 3, Indels: 8
0.82 0.05 0.13
Matches are distributed among these distances:
59 3 0.06
60 12 0.24
61 12 0.24
62 3 0.06
64 14 0.29
65 5 0.10
ACGTcount: A:0.42, C:0.00, G:0.08, T:0.50
Consensus pattern (63 bp):
ATTTTAAAAAAAAATAGATTTAGAATTTTTAAGATATTTTGAATTTTTTGTAATATATATAAA
Found at i:102485836 original size:34 final size:35
Alignment explanation
Indices: 102485750--102485872 Score: 131
Period size: 35 Copynumber: 3.5 Consensus size: 35
102485740 AAGAACACTA
* * * *
102485750 GTGTGTTTCGGAAGGATTAGCCCTTATGAGAATTG
1 GTGTGTTTTGGATGGATTAGCTCTTATGAGCATTG
* *
102485785 GTGTGTTTTGGAGGGATTAGCTCTTACGAGCATTG
1 GTGTGTTTTGGATGGATTAGCTCTTATGAGCATTG
* * * *
102485820 GTGTG-TTTGGATGGATTGGCTTTTATAAGCATCTA
1 GTGTGTTTTGGATGGATTAGCTCTTATGAGCAT-TG
*
102485855 GTGTGTTTTGGTTGGATT
1 GTGTGTTTTGGATGGATT
102485873 GTCGATGTAC
Statistics
Matches: 74, Mismatches: 12, Indels: 3
0.83 0.13 0.03
Matches are distributed among these distances:
34 22 0.30
35 41 0.55
36 11 0.15
ACGTcount: A:0.18, C:0.09, G:0.33, T:0.41
Consensus pattern (35 bp):
GTGTGTTTTGGATGGATTAGCTCTTATGAGCATTG
Found at i:102492376 original size:66 final size:67
Alignment explanation
Indices: 102492247--102492376 Score: 156
Period size: 68 Copynumber: 1.9 Consensus size: 67
102492237 TACTATGTGT
* * * * *
102492247 ACACCATGTAGACAAGAAAGCTGCGGGGATATATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGA
1 ACACCATGTAGACAAGAAAGCTACGGAGATAAATG-AGCTAGGTCACATGCGTGGTACCAAGTGA
102492312 AGG
65 AGG
* * *
102492315 ACACCATGTAGACAAGAGAGCTAC-GAGATAAACTG-GCTAGGTCACATGGGTGGTACTAAGTG
1 ACACCATGTAGACAAGAAAGCTACGGAGATAAA-TGAGCTAGGTCACATGCGTGGTACCAAGTG
102492377 TTCACCATGT
Statistics
Matches: 53, Mismatches: 8, Indels: 4
0.82 0.12 0.06
Matches are distributed among these distances:
66 23 0.43
67 6 0.11
68 24 0.45
ACGTcount: A:0.32, C:0.18, G:0.31, T:0.20
Consensus pattern (67 bp):
ACACCATGTAGACAAGAAAGCTACGGAGATAAATGAGCTAGGTCACATGCGTGGTACCAAGTGAA
GG
Found at i:102494709 original size:48 final size:46
Alignment explanation
Indices: 102494593--102494762 Score: 157
Period size: 46 Copynumber: 3.7 Consensus size: 46
102494583 ATATCGTGAA
** ** * *
102494593 GCCGATGCATGTCCC-GACATGTCTTACACTAACTCTCGT-CTCAAT
1 GCCGATGCATGTCCCAGACATGTCTTACACTGGCTCTAATGCT-GAG
* * * *
102494638 GTCGATACATGTCCCATACATGTCTTACACTGGCT-TAAATATCTCGAG
1 GCCGATGCATGTCCCAGACATGTCTTACACTGGCTCT-AAT-GCT-GAG
* * *
102494686 GCCGATGCATGTCCCAGAGATGTCTTACACTGGCTCTCATGCTGTG
1 GCCGATGCATGTCCCAGACATGTCTTACACTGGCTCTAATGCTGAG
*
102494732 GCTGATGCATGTCCCAGACATGTCTTACACT
1 GCCGATGCATGTCCCAGACATGTCTTACACT
102494763 AGCACACATA
Statistics
Matches: 102, Mismatches: 18, Indels: 9
0.79 0.14 0.07
Matches are distributed among these distances:
45 14 0.14
46 48 0.47
47 2 0.02
48 37 0.36
49 1 0.01
ACGTcount: A:0.22, C:0.29, G:0.19, T:0.29
Consensus pattern (46 bp):
GCCGATGCATGTCCCAGACATGTCTTACACTGGCTCTAATGCTGAG
Found at i:102494746 original size:94 final size:92
Alignment explanation
Indices: 102494553--102494762 Score: 226
Period size: 93 Copynumber: 2.2 Consensus size: 92
102494543 AGCTGACGCT
* * * * ** *
102494553 ATGTCCTAGACATTTCTAACACTAGCTTGCATATCGT-GAAGCCGATGCATGTCCCGACATGTCT
1 ATGTCCCAGACATGTCTTACACTGGCTTAAATATC-TCGAGGCCGATGCATGTCCCGACATGTCT
* *
102494617 TACACTAACTCTCGTCTCAATGTCGATAC
65 TACACTAACTCTCATCT-AATGGCGATAC
* *
102494646 ATGTCCCATACATGTCTTACACTGGCTTAAATATCTCGAGGCCGATGCATGTCCCAGAGATGTCT
1 ATGTCCCAGACATGTCTTACACTGGCTTAAATATCTCGAGGCCGATGCATGTCCC-GACATGTCT
** * *
102494711 TACACTGGCTCTCATGCT-GTGGCTGATGC
65 TACACTAACTCTCAT-CTAATGGC-GATAC
102494740 ATGTCCCAGACATGTCTTACACT
1 ATGTCCCAGACATGTCTTACACT
102494763 AGCACACATA
Statistics
Matches: 97, Mismatches: 16, Indels: 7
0.81 0.13 0.06
Matches are distributed among these distances:
92 1 0.01
93 48 0.49
94 46 0.47
95 2 0.02
ACGTcount: A:0.24, C:0.28, G:0.19, T:0.30
Consensus pattern (92 bp):
ATGTCCCAGACATGTCTTACACTGGCTTAAATATCTCGAGGCCGATGCATGTCCCGACATGTCTT
ACACTAACTCTCATCTAATGGCGATAC
Found at i:102494755 original size:46 final size:45
Alignment explanation
Indices: 102494409--102494762 Score: 191
Period size: 49 Copynumber: 7.5 Consensus size: 45
102494399 ATGCCGACGC
* * * *
102494409 CATGTCCCAGACATGGTCTTACACTGACTTTCATATAGTGAGGCCGATG
1 CATGTCCCAGACAT-GTCTTACACTGGCTCTCATCTCGT--GG-CGATG
* * *
102494458 CCATGTCCAAGACAGGTCTTACACTGGCTCTCATCTATCGGTGTCGATG
1 -CATGTCCCAGACATGTCTTACACTGGCTCTCATC--TC-GTGGCGATG
* * * * * ** *
102494507 CCATGTCCCAGACAGGTCTTACACT-G-ACACACCAC-AAGCTGACG
1 -CATGTCCCAGACATGTCTTACACTGGCTCTCATCTCGTGGC-GATG
* * * * *
102494551 CTATGTCCTAGACATTTCTAACACTAGCT-TGCATATCGTGAAGCCGATG
1 C-ATGTCCCAGACATGTCTTACACTGGCTCT-CATCTCGTG--G-CGATG
** * * * *
102494600 CATGTCCC-GACATGTCTTACACTAACTCTCGTCTCAATGTCGATA
1 CATGTCCCAGACATGTCTTACACTGGCTCTCATCTC-GTGGCGATG
* * *
102494645 CATGTCCCATACATGTCTTACACTGGCT-TAAATATCTCGAGGCCGATG
1 CATGTCCCAGACATGTCTTACACTGGCTCT---CATCTCGTGG-CGATG
*
102494693 CATGTCCCAGAGATGTCTTACACTGGCTCTCATGCT-GTGGCTGATG
1 CATGTCCCAGACATGTCTTACACTGGCTCTCAT-CTCGTGGC-GATG
102494739 CATGTCCCAGACATGTCTTACACT
1 CATGTCCCAGACATGTCTTACACT
102494763 AGCACACATA
Statistics
Matches: 231, Mismatches: 51, Indels: 48
0.70 0.15 0.15
Matches are distributed among these distances:
43 2 0.01
44 22 0.10
45 16 0.07
46 51 0.22
47 27 0.12
48 44 0.19
49 52 0.23
50 14 0.06
51 1 0.00
52 2 0.01
ACGTcount: A:0.24, C:0.29, G:0.19, T:0.28
Consensus pattern (45 bp):
CATGTCCCAGACATGTCTTACACTGGCTCTCATCTCGTGGCGATG
Found at i:102494774 original size:94 final size:93
Alignment explanation
Indices: 102494544--102494774 Score: 234
Period size: 94 Copynumber: 2.5 Consensus size: 93
102494534 CACACCACAA
* * * * *
102494544 GCTGACGCTATGTCCTAGACATTTCTAACACTAGCTTGCATATCGTGAAGCCGATGCATGTCCCG
1 GCTGATGC-ATGTCCCAGACATGTCTTACACTAGCTTACATATCGTGAAGCCGATGCATGTCCCG
*
102494609 ACATGTCTTACACTAACTCTCGTCTCAATG
65 ACATGTCTTACACTAACTCTCATCT-AATG
* * * * * *
102494639 TC-GATACATGTCCCATACATGTCTTACACTGGCTTAAATATC-TCGAGGCCGATGCATGTCCCA
1 GCTGATGCATGTCCCAGACATGTCTTACACTAGCTTACATATCGT-GAAGCCGATGCATGTCCC-
* ** *
102494702 GAGATGTCTTACACTGGCTCTCATGCT-GTG
64 GACATGTCTTACACTAACTCTCAT-CTAATG
**
102494732 GCTGATGCATGTCCCAGACATGTCTTACACTAGCACACATATC
1 GCTGATGCATGTCCCAGACATGTCTTACACTAGCTTACATATC
102494775 ACCCATTATC
Statistics
Matches: 109, Mismatches: 23, Indels: 9
0.77 0.16 0.06
Matches are distributed among these distances:
92 1 0.01
93 48 0.44
94 57 0.52
95 3 0.03
ACGTcount: A:0.24, C:0.28, G:0.19, T:0.29
Consensus pattern (93 bp):
GCTGATGCATGTCCCAGACATGTCTTACACTAGCTTACATATCGTGAAGCCGATGCATGTCCCGA
CATGTCTTACACTAACTCTCATCTAATG
Found at i:102495136 original size:30 final size:30
Alignment explanation
Indices: 102495100--102495157 Score: 107
Period size: 30 Copynumber: 1.9 Consensus size: 30
102495090 TTAAAATTGG
102495100 GTAAAATGACCATTTTACCCCTAGACTCTT
1 GTAAAATGACCATTTTACCCCTAGACTCTT
*
102495130 GTAAAATGACCATTTTACCCTTAGACTC
1 GTAAAATGACCATTTTACCCCTAGACTC
102495158 GAAAATTGAT
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.31, C:0.26, G:0.10, T:0.33
Consensus pattern (30 bp):
GTAAAATGACCATTTTACCCCTAGACTCTT
Found at i:102505999 original size:5 final size:5
Alignment explanation
Indices: 102505989--102506036 Score: 60
Period size: 5 Copynumber: 9.0 Consensus size: 5
102505979 AAGAAATAAG
*
102505989 TAAAA TAAAA TAGAA TAAAA TAAAAA TAAAA TAAAA CTTAAAA TAAAA
1 TAAAA TAAAA TAAAA TAAAA T-AAAA TAAAA TAAAA --TAAAA TAAAA
102506037 AAATAATAGT
Statistics
Matches: 38, Mismatches: 2, Indels: 6
0.83 0.04 0.13
Matches are distributed among these distances:
5 28 0.74
6 5 0.13
7 5 0.13
ACGTcount: A:0.75, C:0.02, G:0.02, T:0.21
Consensus pattern (5 bp):
TAAAA
Found at i:102506016 original size:16 final size:15
Alignment explanation
Indices: 102505982--102506042 Score: 63
Period size: 16 Copynumber: 4.0 Consensus size: 15
102505972 AAGACTAAAG
*
102505982 AAATAAGTAAAAT-A
1 AAATAAATAAAATAA
102505996 AAATAGAATAAAATAA
1 AAATA-AATAAAATAA
*
102506012 AAATAAAATAAAACTTA
1 AAAT-AAATAAAA-TAA
102506029 AAATAAA-AAAATAA
1 AAATAAATAAAATAA
102506043 TAGTAACACG
Statistics
Matches: 40, Mismatches: 3, Indels: 8
0.78 0.06 0.16
Matches are distributed among these distances:
14 7 0.17
15 11 0.28
16 15 0.38
17 7 0.17
ACGTcount: A:0.75, C:0.02, G:0.03, T:0.20
Consensus pattern (15 bp):
AAATAAATAAAATAA
Found at i:102506032 original size:12 final size:11
Alignment explanation
Indices: 102505990--102506037 Score: 62
Period size: 11 Copynumber: 4.4 Consensus size: 11
102505980 AGAAATAAGT
102505990 AAAATAAAAT-
1 AAAATAAAATA
*
102506000 AGAATAAAATA
1 AAAATAAAATA
102506011 AAAATAAAATA
1 AAAATAAAATA
*
102506022 AAACTTAAAATA
1 AAA-ATAAAATA
102506034 AAAA
1 AAAA
102506038 AATAATAGTA
Statistics
Matches: 32, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
10 9 0.28
11 13 0.41
12 10 0.31
ACGTcount: A:0.77, C:0.02, G:0.02, T:0.19
Consensus pattern (11 bp):
AAAATAAAATA
Found at i:102509786 original size:22 final size:23
Alignment explanation
Indices: 102509752--102509796 Score: 65
Period size: 22 Copynumber: 2.0 Consensus size: 23
102509742 TAAAGAAAGG
102509752 AAAATTAGGAATTAAAATAAAAAC
1 AAAATTA-GAATTAAAATAAAAAC
*
102509776 AAAATTA-AATTGAAATAAAAA
1 AAAATTAGAATTAAAATAAAAA
102509797 AATGGCTAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
22 13 0.65
24 7 0.35
ACGTcount: A:0.69, C:0.02, G:0.07, T:0.22
Consensus pattern (23 bp):
AAAATTAGAATTAAAATAAAAAC
Found at i:102510922 original size:30 final size:30
Alignment explanation
Indices: 102510870--102510927 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
102510860 CACGGCCATG
* **
102510870 ACACACGGGCGTGTGTCCTACCCGTGTGTC
1 ACACACGGGCATGTGGACTACCCGTGTGTC
*
102510900 ACACACGGGCATGTGGATTACCCGTGTG
1 ACACACGGGCATGTGGACTACCCGTGTG
102510928 GAAGTGCCTA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.17, C:0.29, G:0.31, T:0.22
Consensus pattern (30 bp):
ACACACGGGCATGTGGACTACCCGTGTGTC
Found at i:102516325 original size:14 final size:14
Alignment explanation
Indices: 102516306--102516338 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
102516296 AGCCATTTTT
*
102516306 TATTTTTATTTTAA
1 TATTTTTAATTTAA
102516320 TATTTTTAATTTAA
1 TATTTTTAATTTAA
102516334 T-TTTT
1 TATTTT
102516339 ACATTCTAAT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 4 0.22
14 14 0.78
ACGTcount: A:0.27, C:0.00, G:0.00, T:0.73
Consensus pattern (14 bp):
TATTTTTAATTTAA
Found at i:102516377 original size:19 final size:19
Alignment explanation
Indices: 102516326--102516369 Score: 88
Period size: 19 Copynumber: 2.3 Consensus size: 19
102516316 TTAATATTTT
102516326 TAATTTAATTTTTACATTC
1 TAATTTAATTTTTACATTC
102516345 TAATTTAATTTTTACATTC
1 TAATTTAATTTTTACATTC
102516364 TAATTT
1 TAATTT
102516370 TTTGTTTATT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 25 1.00
ACGTcount: A:0.32, C:0.09, G:0.00, T:0.59
Consensus pattern (19 bp):
TAATTTAATTTTTACATTC
Found at i:102533007 original size:44 final size:43
Alignment explanation
Indices: 102532916--102533171 Score: 354
Period size: 42 Copynumber: 6.0 Consensus size: 43
102532906 GGCGTTTATT
102532916 AAAAAAAAGCGCCGCTAAAAGTCATGGCCTTTAGCGGCGTTTG
1 AAAAAAAAGCGCCGCTAAAAGTCATGGCCTTTAGCGGCGTTTG
* *
102532959 AAAAAAAAGCGCCGCTAAAAGTCCTGGCATTTAGCGGCGTTTG
1 AAAAAAAAGCGCCGCTAAAAGTCATGGCCTTTAGCGGCGTTTG
* *
102533002 -AAAAAAAGCGCTGTTAAAAGTCATGGCCTTTAGCGGCGTTT-
1 AAAAAAAAGCGCCGCTAAAAGTCATGGCCTTTAGCGGCGTTTG
*
102533043 AAAAAAAAGCGCCGCTAAAAGTCGTGGCCTTTAGCGGCGTTTGG
1 AAAAAAAAGCGCCGCTAAAAGTCATGGCCTTTAGCGGCGTTT-G
* * *
102533087 AAAAAAAAGCGCCGCTAAAAGTCGTGGCCTTTAACGCCGTTTG
1 AAAAAAAAGCGCCGCTAAAAGTCATGGCCTTTAGCGGCGTTTG
** * * * **
102533130 GGAAAAAAGCACTGCTAAAAGTCACGATCTTTAGCGGCGTTT
1 AAAAAAAAGCGCCGCTAAAAGTCATGGCCTTTAGCGGCGTTT
102533172 TTCCCACAAA
Statistics
Matches: 189, Mismatches: 21, Indels: 6
0.88 0.10 0.03
Matches are distributed among these distances:
42 75 0.40
43 74 0.39
44 40 0.21
ACGTcount: A:0.32, C:0.20, G:0.25, T:0.22
Consensus pattern (43 bp):
AAAAAAAAGCGCCGCTAAAAGTCATGGCCTTTAGCGGCGTTTG
Found at i:102534022 original size:13 final size:14
Alignment explanation
Indices: 102533997--102534025 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
102533987 TGATGAATTG
102533997 AATTAAACAATTAT
1 AATTAAACAATTAT
102534011 AATTAAAC-ATTAT
1 AATTAAACAATTAT
102534024 AA
1 AA
102534026 ATATTTAGAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 7 0.47
14 8 0.53
ACGTcount: A:0.59, C:0.07, G:0.00, T:0.34
Consensus pattern (14 bp):
AATTAAACAATTAT
Found at i:102534200 original size:17 final size:18
Alignment explanation
Indices: 102534173--102534207 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
102534163 AGTAAAAATA
102534173 TTATCTAATATTAGAAAG
1 TTATCTAATATTAGAAAG
*
102534191 TTAT-TAATATTTGAAAG
1 TTATCTAATATTAGAAAG
102534208 AATTAATAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 12 0.75
18 4 0.25
ACGTcount: A:0.43, C:0.03, G:0.11, T:0.43
Consensus pattern (18 bp):
TTATCTAATATTAGAAAG
Found at i:102534214 original size:16 final size:17
Alignment explanation
Indices: 102534178--102534215 Score: 51
Period size: 17 Copynumber: 2.3 Consensus size: 17
102534168 AAATATTATC
*
102534178 TAATATTAGAAAGTTAT
1 TAATATTAGAAAGTAAT
*
102534195 TAATATTTGAAAG-AAT
1 TAATATTAGAAAGTAAT
102534211 TAATA
1 TAATA
102534216 AAATTTTAAT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
16 7 0.37
17 12 0.63
ACGTcount: A:0.50, C:0.00, G:0.11, T:0.39
Consensus pattern (17 bp):
TAATATTAGAAAGTAAT
Found at i:102539204 original size:9 final size:9
Alignment explanation
Indices: 102539190--102539379 Score: 107
Period size: 9 Copynumber: 20.6 Consensus size: 9
102539180 TATTTAAGTA
102539190 TTATGTAAG
1 TTATGTAAG
102539199 TTATGTAAG
1 TTATGTAAG
*
102539208 TTATGATATG
1 TTATG-TAAG
* * *
102539218 ATATAT-AT
1 TTATGTAAG
*
102539226 TTATGTAAA
1 TTATGTAAG
* *
102539235 TTATAT-AT
1 TTATGTAAG
*
102539243 TTATCTAAG
1 TTATGTAAG
*
102539252 TTATATAAG
1 TTATGTAAG
102539261 TTATGTAAG
1 TTATGTAAG
*
102539270 TTATGTAAA
1 TTATGTAAG
*
102539279 TTATGATATAAAA
1 TTATG---T-AAG
*
102539292 TATATTTAAG
1 T-TATGTAAG
102539302 TATTATGTAAG
1 --TTATGTAAG
102539313 TTATGTAAG
1 TTATGTAAG
* *
102539322 TTATAT-AT
1 TTATGTAAG
*
102539330 TTATCTAAG
1 TTATGTAAG
*
102539339 TTATATAAG
1 TTATGTAAG
*
102539348 TTATGTACG
1 TTATGTAAG
*
102539357 TTTTGTAAG
1 TTATGTAAG
* *
102539366 TTATATAAA
1 TTATGTAAG
102539375 TTATG
1 TTATG
102539380 ATATCAAATA
Statistics
Matches: 139, Mismatches: 31, Indels: 22
0.72 0.16 0.11
Matches are distributed among these distances:
8 16 0.12
9 98 0.71
10 8 0.06
11 8 0.06
12 2 0.01
13 4 0.03
14 3 0.02
ACGTcount: A:0.38, C:0.02, G:0.13, T:0.47
Consensus pattern (9 bp):
TTATGTAAG
Found at i:102539272 original size:71 final size:69
Alignment explanation
Indices: 102539190--102539352 Score: 202
Period size: 71 Copynumber: 2.3 Consensus size: 69
102539180 TATTTAAGTA
* * * *
102539190 TTATGTAAGTTATGTAAGTTATGATATGATATATATTTATGTAAATTATAT-ATTTATCTAAGTT
1 TTATGTAAGTTATGTAAGTTATGATATAAAATATATTTAAGT--ATTATATAAGTTATCTAAGTT
102539254 ATATAAG
64 ATAT-AG
* * *
102539261 TTATGTAAGTTATGTAAATTATGATATAAAATATATTTAAGTATTATGTAAGTTATGTAAGTTAT
1 TTATGTAAGTTATGTAAGTTATGATATAAAATATATTTAAGTATTATATAAGTTATCTAAGTTAT
*
102539326 ATAT
66 ATAG
* *
102539330 TTATCTAAGTTATATAAGTTATG
1 TTATGTAAGTTATGTAAGTTATG
102539353 TACGTTTTGT
Statistics
Matches: 80, Mismatches: 11, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
69 27 0.34
70 15 0.19
71 38 0.47
ACGTcount: A:0.39, C:0.01, G:0.13, T:0.47
Consensus pattern (69 bp):
TTATGTAAGTTATGTAAGTTATGATATAAAATATATTTAAGTATTATATAAGTTATCTAAGTTAT
ATAG
Found at i:102539328 original size:87 final size:90
Alignment explanation
Indices: 102539226--102539410 Score: 259
Period size: 96 Copynumber: 2.0 Consensus size: 90
102539216 TGATATATAT
*
102539226 TTATGTAAATTATATATTTATCTAAGTTATATAAG-T-TA-TGTAAGTTATGTAAATTATGATAT
1 TTATGTAAATTATATATTTATCTAAGTTATATAAGTTGTATTGTAAGTTATATAAATTATGATAT
102539288 AAAATATATTTAAGTATTATGTAAG
66 AAAATATATTTAAGTATTATGTAAG
*
102539313 TTATGTAAGTTATATATTTATCTAAGTTATATAAGTTATGTACGTTTTGTAAGTTATATAAATTA
1 TTATGTAAATTATATATTTATCTAAGTTATATAAG-T-TGTA----TTGTAAGTTATATAAATTA
* *
102539378 TGATATCAAATATATTTATGTATTATGTAAG
60 TGATATAAAATATATTTAAGTATTATGTAAG
102539409 TT
1 TT
102539411 TTTATTTCAC
Statistics
Matches: 85, Mismatches: 4, Indels: 9
0.87 0.04 0.09
Matches are distributed among these distances:
87 34 0.40
90 1 0.01
91 2 0.02
96 48 0.56
ACGTcount: A:0.38, C:0.02, G:0.12, T:0.48
Consensus pattern (90 bp):
TTATGTAAATTATATATTTATCTAAGTTATATAAGTTGTATTGTAAGTTATATAAATTATGATAT
AAAATATATTTAAGTATTATGTAAG
Found at i:102539366 original size:114 final size:114
Alignment explanation
Indices: 102539166--102539379 Score: 290
Period size: 114 Copynumber: 1.9 Consensus size: 114
102539156 ACTAGTTATG
* * * *
102539166 TATGATATGATATATATTTAAGTATTATGTAAGTTATGTAAGTTATGATATGATATATATTTATG
1 TATGATATAAAATATATTTAAGTATTATGTAAGTTATGTAAGTTATGATATGATATATAGTTATA
*
102539231 TAAATTATATATTTATCTAAGTTATATAAGTTATGTAAGTTATGTAAAT
66 TAAATTATATATTTATCTAAGTTATATAAATTATGTAAGTTATGTAAAT
* *
102539280 TATGATATAAAATATATTTAAGTATTATGTAAGTTATGTAAGTTAT-ATAT-TTATCTAAGTTAT
1 TATGATATAAAATATATTTAAGTATTATGTAAGTTATGTAAGTTATGATATGATATAT-AGTTAT
* * *
102539343 ATAAGTTATGTACGTTT-TGTAAGTTATATAAATTATG
65 ATAAATTATATA--TTTATCTAAGTTATATAAATTATG
102539380 ATATCAAATA
Statistics
Matches: 87, Mismatches: 10, Indels: 6
0.84 0.10 0.06
Matches are distributed among these distances:
112 4 0.05
113 18 0.21
114 62 0.71
115 3 0.03
ACGTcount: A:0.38, C:0.01, G:0.13, T:0.47
Consensus pattern (114 bp):
TATGATATAAAATATATTTAAGTATTATGTAAGTTATGTAAGTTATGATATGATATATAGTTATA
TAAATTATATATTTATCTAAGTTATATAAATTATGTAAGTTATGTAAAT
Found at i:102539503 original size:15 final size:15
Alignment explanation
Indices: 102539483--102539538 Score: 64
Period size: 15 Copynumber: 3.8 Consensus size: 15
102539473 AAGTAGCGGG
102539483 ATTAAATAATATTTA
1 ATTAAATAATATTTA
102539498 ATTAAATAATATTT-
1 ATTAAATAATATTTA
102539512 A-TAAA-AATTATTTTA
1 ATTAAATAA-TA-TTTA
*
102539527 ATTAAGTAATAT
1 ATTAAATAATAT
102539539 ACATGTCGTT
Statistics
Matches: 35, Mismatches: 1, Indels: 10
0.76 0.02 0.22
Matches are distributed among these distances:
12 2 0.06
13 6 0.17
14 4 0.11
15 16 0.46
16 5 0.14
17 2 0.06
ACGTcount: A:0.52, C:0.00, G:0.02, T:0.46
Consensus pattern (15 bp):
ATTAAATAATATTTA
Found at i:102540294 original size:272 final size:274
Alignment explanation
Indices: 102539748--102540419 Score: 1271
Period size: 272 Copynumber: 2.5 Consensus size: 274
102539738 ATAAAACGGA
*
102539748 GAATTTTTTAAGATTCATCATACGCGGCGTTGTTACACCTAGGGAGGATCCA-TATATCTTGCAG
1 GAATTTTTTAAGATTCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTGCAG
102539812 CTCGATATAAGGCAACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAAATA
66 CTCGATATAAGGCAACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTT-AATA
102539877 TTAAAATCAAACATTATTAATATAAAAAAATAGTAATTTGAATATAATAATATAAAAAAAGAATC
130 TTAAAATCAAACATTATTAATATAAAAAAATAGTAATTTGAATATAATAATATAAAAAAAGAATC
*
102539942 GTAGTTTAATTTTTATAAGTACATTGAAAATAAATATTCAATAGTAAATAAGCTCGATAGAACTT
195 GTAGTTTAATTTTTATAAGTAAATTGAAAATAAATATTCAATAGTAAATAAGCTCGATAGAACTT
102540007 TTTTCAAGTCTTTTT
260 TTTTCAAGTCTTTTT
102540022 GAATTTTTTAAGATTCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTGCAG
1 GAATTTTTTAAGATTCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTGCAG
102540087 CTCGATATAAGGCAACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAATAT
66 CTCGATATAAGGCAACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAATAT
102540152 TAAAATCAAACATTATTAATAT-AAAAAATAGTAATTTGAATATAATAATAT-AAAAAAGAATCG
131 TAAAATCAAACATTATTAATATAAAAAAATAGTAATTTGAATATAATAATATAAAAAAAGAATCG
* *
102540215 TAGTTTAATTTTTATAAGTAAATTGGAAATAAATATTCAATAGTAAATGAGCTCGATAGAACTTT
196 TAGTTTAATTTTTATAAGTAAATTGAAAATAAATATTCAATAGTAAATAAGCTCGATAGAACTTT
102540280 TTTCAAGTCTTTTT
261 TTTCAAGTCTTTTT
102540294 GAATTTTTTAAGATTCATCATACGTGGCGTTGTTACACCTA-GGAGGATCCATTATATCTTGCAG
1 GAATTTTTTAAGATTCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTGCAG
102540358 CTCGATATAAGGCAACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAA
66 CTCGATATAAGGCAACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAA
102540420 AATAAGGTTG
Statistics
Matches: 393, Mismatches: 4, Indels: 5
0.98 0.01 0.01
Matches are distributed among these distances:
271 85 0.22
272 129 0.33
273 29 0.07
274 78 0.20
275 72 0.18
ACGTcount: A:0.37, C:0.14, G:0.14, T:0.36
Consensus pattern (274 bp):
GAATTTTTTAAGATTCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTGCAG
CTCGATATAAGGCAACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAATAT
TAAAATCAAACATTATTAATATAAAAAAATAGTAATTTGAATATAATAATATAAAAAAAGAATCG
TAGTTTAATTTTTATAAGTAAATTGAAAATAAATATTCAATAGTAAATAAGCTCGATAGAACTTT
TTTCAAGTCTTTTT
Found at i:102540702 original size:15 final size:15
Alignment explanation
Indices: 102540682--102540710 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
102540672 AGAATTTTGA
102540682 AATAAAACGTACCTT
1 AATAAAACGTACCTT
102540697 AATAAAACGTACCT
1 AATAAAACGTACCT
102540711 GGTCTACTCC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.48, C:0.21, G:0.07, T:0.24
Consensus pattern (15 bp):
AATAAAACGTACCTT
Found at i:102541221 original size:183 final size:183
Alignment explanation
Indices: 102540911--102541279 Score: 659
Period size: 183 Copynumber: 2.0 Consensus size: 183
102540901 CCTAGAACAG
102540911 ATGTAAGATTATAAGAGTAGCACCAAATATATTTCAGTTTAAGCAAATATAAAAACTTTATCTAT
1 ATGTAAGATTATAAGAGTAGCACCAAATATATTTCAGTTTAAGCAAATATAAAAACTTTATCTAT
*
102540976 ATCAGTACCAAATATTAATTCGAAGATTAAATGGCAGCTTCAGTTGAACCAATAGCTGCAGGAGG
66 ATCAGTACCAAATATTAATTCGAAGATTAAATGACAGCTTCAGTTGAACCAATAGCTGCAGGAGG
* *
102541041 AGC-AGGAAGCAGTAACTGAAATACATACAACATTAATTCACTAATACAGACAC
131 AGCAAGG-AGCAATAACTGAAACACATACAACATTAATTCACTAATACAGACAC
*
102541094 ATGTAAGATTATAAGAGTAGCACCAAATATATTTCAGTTTAAGCAAATATGAAAACTTTATCTAT
1 ATGTAAGATTATAAGAGTAGCACCAAATATATTTCAGTTTAAGCAAATATAAAAACTTTATCTAT
*
102541159 ATCAGTACCAAATATTAATTCGAAGATTAAATGACAGCTTCAGTTGAACCAATAGTTGCAGGAGG
66 ATCAGTACCAAATATTAATTCGAAGATTAAATGACAGCTTCAGTTGAACCAATAGCTGCAGGAGG
* *
102541224 AGCAAGGAGCAATAACTGAAACATATACAACATTAATTCACTAATATAGACAC
131 AGCAAGGAGCAATAACTGAAACACATACAACATTAATTCACTAATACAGACAC
102541277 ATG
1 ATG
102541280 GAACTATATC
Statistics
Matches: 178, Mismatches: 7, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
183 175 0.98
184 3 0.02
ACGTcount: A:0.43, C:0.15, G:0.15, T:0.27
Consensus pattern (183 bp):
ATGTAAGATTATAAGAGTAGCACCAAATATATTTCAGTTTAAGCAAATATAAAAACTTTATCTAT
ATCAGTACCAAATATTAATTCGAAGATTAAATGACAGCTTCAGTTGAACCAATAGCTGCAGGAGG
AGCAAGGAGCAATAACTGAAACACATACAACATTAATTCACTAATACAGACAC
Found at i:102541369 original size:14 final size:13
Alignment explanation
Indices: 102541350--102541379 Score: 51
Period size: 14 Copynumber: 2.2 Consensus size: 13
102541340 CAATATAATT
102541350 TTACTTCATATATA
1 TTACTTCATATA-A
102541364 TTACTTCATATAA
1 TTACTTCATATAA
102541377 TTA
1 TTA
102541380 TTATAGTAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 4 0.25
14 12 0.75
ACGTcount: A:0.37, C:0.13, G:0.00, T:0.50
Consensus pattern (13 bp):
TTACTTCATATAA
Found at i:102546104 original size:40 final size:40
Alignment explanation
Indices: 102546055--102546161 Score: 117
Period size: 40 Copynumber: 2.6 Consensus size: 40
102546045 ACACTTCTGC
*
102546055 GGCGTTTTTAGAAAAACGCCGCTAATACTT-CACCCATTGT
1 GGCG-TTTTAGAAAAACGCCGCTAATACTTGAACCCATTGT
* * ***
102546095 GGCGCTTTTACAAAAACGCCGCTAATGCTTGAACTTTTTGT
1 GGCG-TTTTAGAAAAACGCCGCTAATACTTGAACCCATTGT
*
102546136 GGCGTTTTACGAGAAACGCCGCTAAT
1 GGCGTTTTA-GAAAAACGCCGCTAAT
102546162 GCCTCAATAG
Statistics
Matches: 56, Mismatches: 9, Indels: 3
0.82 0.13 0.04
Matches are distributed among these distances:
40 32 0.57
41 24 0.43
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (40 bp):
GGCGTTTTAGAAAAACGCCGCTAATACTTGAACCCATTGT
Found at i:102546276 original size:40 final size:40
Alignment explanation
Indices: 102546226--102546323 Score: 126
Period size: 41 Copynumber: 2.4 Consensus size: 40
102546216 TTGTAGAAAC
*
102546226 CGCCGCTAATGCGTCACA-TATTGCGGCGTTTTTGGTAAAA
1 CGCCGCTAATGCGTCA-AGTATAGCGGCGTTTTTGGTAAAA
* * *
102546266 TGCCGCTAATGCTTGAAGTTATAGCGGCGTTTTTGGTAAAA
1 CGCCGCTAATGCGTCAAG-TATAGCGGCGTTTTTGGTAAAA
*
102546307 CGCCGCTAATGCCTCAA
1 CGCCGCTAATGCGTCAA
102546324 AAGAGCTCAC
Statistics
Matches: 49, Mismatches: 7, Indels: 3
0.83 0.12 0.05
Matches are distributed among these distances:
39 1 0.02
40 13 0.27
41 35 0.71
ACGTcount: A:0.23, C:0.22, G:0.24, T:0.30
Consensus pattern (40 bp):
CGCCGCTAATGCGTCAAGTATAGCGGCGTTTTTGGTAAAA
Found at i:102546317 original size:155 final size:153
Alignment explanation
Indices: 102546027--102546437 Score: 457
Period size: 155 Copynumber: 2.6 Consensus size: 153
102546017 TAACTAATGG
* * * *
102546027 ACGGCGCCGTTTTGCTCAACACTTCTGCGGCGTTTTTAGAAAAACGCCGCTAATACTTCACCCAT
1 ACGGCGCCGTTTTGCTCAACACTTTTGCGGCGTTTTTAG-AAACCGCCGCTAATGCGTCA-CCAT
* ** * * *
102546092 TGTGGCGCTTTTACAAAAACGCCGCTAATGCTTGAACTTTTTGTGGCGTTTTACGAGAAACGCCG
64 TGCGGCG-TTTT-TTAAAACGCCGCTAATGCTTGAACTTATAGCGGCGTTTTACGAGAAACGCCG
* *
102546157 CTAATGCCTC-AATAGCTCACCTACAC
127 CTAATGCCTCAAAGAGCTCACCAACAC
* * * *
102546183 ACGGCGCCGTTTTGCTCAATACTTTTGCGACGTTTGTAGAAACCGCCGCTAATGCGTCACATATT
1 ACGGCGCCGTTTTGCTCAACACTTTTGCGGCGTTTTTAGAAACCGCCGCTAATGCGTCAC-CATT
* * **
102546248 GCGGCGTTTTTGGTAAAATGCCGCTAATGCTTGAAGTTATAGCGGCGTTTTTGGTA-AAACGCCG
65 GCGGCGTTTTT--TAAAACGCCGCTAATGCTTGAACTTATAGCGGCGTTTTACG-AGAAACGCCG
*
102546312 CTAATGCCTCAAAAGAGCTCACCAACAT
127 CTAATGCCTC-AAAGAGCTCACCAACAC
* * * * *
102546340 ACGGCACCGTTTTGCTCAACACTTTTACGGCATTTTTTGACAACCGCCGCTAATGTGTCAGCCAT
1 ACGGCGCCGTTTTGCTCAACACTTTTGCGGCGTTTTTAGA-AACCGCCGCTAATGCGTCA-CCAT
102546405 TGCGGCGTTCTTTTATAAACGCCGCTAATGCTT
64 TGCGGCGTT-TTTTA-AAACGCCGCTAATGCTT
102546438 TATTTTTTAT
Statistics
Matches: 214, Mismatches: 31, Indels: 18
0.81 0.12 0.07
Matches are distributed among these distances:
154 5 0.02
155 76 0.36
156 36 0.17
157 48 0.22
158 45 0.21
159 4 0.02
ACGTcount: A:0.24, C:0.26, G:0.21, T:0.29
Consensus pattern (153 bp):
ACGGCGCCGTTTTGCTCAACACTTTTGCGGCGTTTTTAGAAACCGCCGCTAATGCGTCACCATTG
CGGCGTTTTTTAAAACGCCGCTAATGCTTGAACTTATAGCGGCGTTTTACGAGAAACGCCGCTAA
TGCCTCAAAGAGCTCACCAACAC
Found at i:102549641 original size:49 final size:49
Alignment explanation
Indices: 102549467--102549778 Score: 464
Period size: 47 Copynumber: 6.6 Consensus size: 49
102549457 CCCTTCGGGA
* * * *
102549467 CTTATCACAT-T-TATACACTTTCACATCCATCACATTGGCCACTCGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
102549514 CCTGTCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
102549561 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
102549608 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
102549657 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
102549706 CTTAT--CATATATATATACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
102549753 CTTATCACATATATATACA--TTCACAT
1 CTTATCACATATATATACACTTTCACAT
102549779 CACAATTATC
Statistics
Matches: 244, Mismatches: 15, Indels: 12
0.90 0.06 0.04
Matches are distributed among these distances:
46 1 0.00
47 141 0.58
49 102 0.42
ACGTcount: A:0.29, C:0.29, G:0.08, T:0.34
Consensus pattern (49 bp):
CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:102549664 original size:96 final size:96
Alignment explanation
Indices: 102549467--102549778 Score: 479
Period size: 96 Copynumber: 3.3 Consensus size: 96
102549457 CCCTTCGGGA
* * * * *
102549467 CTTATCACATTTATACACTTTCACATCCATCACATTGGCCACTCGGCCCTGTCAC--ATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATATAC
102549530 ACTTTCACATTCATCACATCGGCCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
* *
102549561 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATATAC
102549626 ACTTTCACATTCATCACATCGGCCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
102549657 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTAT--CATATATAT
1 CTTATCAC--ATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAT
* *
102549720 ATACTTTCACATTCATCACATCGGCTATTAGGC
64 ACACTTTCACATTCATCACATCGGCCATTAGGC
* *
102549753 CTTATCACATATATATACATTCACAT
1 CTTATCACATATATACACTTTCACAT
102549779 CACAATTATC
Statistics
Matches: 201, Mismatches: 13, Indels: 8
0.91 0.06 0.04
Matches are distributed among these distances:
94 64 0.32
96 95 0.47
98 42 0.21
ACGTcount: A:0.29, C:0.29, G:0.08, T:0.34
Consensus pattern (96 bp):
CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATATAC
ACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:102553491 original size:142 final size:142
Alignment explanation
Indices: 102553318--102553610 Score: 487
Period size: 142 Copynumber: 2.1 Consensus size: 142
102553308 ATCAATGAAA
* * * * *
102553318 AGTTTGATTCTAAGGAAAGTAAATAAAATTTGACATACCAAACGTTAGAATTACTTTCCAATTGA
1 AGTTAGATTCCAAGGAAAGCAAATAAAATTTGACATACCAAACGTTAGAATCACTCTCCAATTGA
102553383 TTAAATTTCTAAGAAAATGATTACTTTCCATCATACCAAATGCTACCCAAAAATATCATGAAGAC
66 TTAAATTTCTAAGAAAATGATTACTTTCCATCATACCAAATGCTACCCAAAAATATCATGAAGAC
102553448 CTTTATACTAAG
131 CTTTATACTAAG
*
102553460 AGTTAGATTCCAAGGAAAGCAAATAAAATTTGACATACCAAACGTTAGAATCACTCTCCAGTTGA
1 AGTTAGATTCCAAGGAAAGCAAATAAAATTTGACATACCAAACGTTAGAATCACTCTCCAATTGA
* * * *
102553525 TTAAATTTCTAAGAAAGTGATTACTTTCCATCATACCAAATGCTACCCCAAAATATCATGGAGGC
66 TTAAATTTCTAAGAAAATGATTACTTTCCATCATACCAAATGCTACCCAAAAATATCATGAAGAC
102553590 CTTTATACTAAG
131 CTTTATACTAAG
*
102553602 AGTCAGATT
1 AGTTAGATT
102553611 GCATTTTGTC
Statistics
Matches: 140, Mismatches: 11, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
142 140 1.00
ACGTcount: A:0.40, C:0.18, G:0.12, T:0.30
Consensus pattern (142 bp):
AGTTAGATTCCAAGGAAAGCAAATAAAATTTGACATACCAAACGTTAGAATCACTCTCCAATTGA
TTAAATTTCTAAGAAAATGATTACTTTCCATCATACCAAATGCTACCCAAAAATATCATGAAGAC
CTTTATACTAAG
Found at i:102554893 original size:72 final size:72
Alignment explanation
Indices: 102554776--102554922 Score: 294
Period size: 72 Copynumber: 2.0 Consensus size: 72
102554766 CTTAGAAATC
102554776 GGACAACATAAATCTACTGGATTAGAATCAAATCTAATAGGGGGATCTATAGATCCAGTTAATAC
1 GGACAACATAAATCTACTGGATTAGAATCAAATCTAATAGGGGGATCTATAGATCCAGTTAATAC
102554841 AATAATA
66 AATAATA
102554848 GGACAACATAAATCTACTGGATTAGAATCAAATCTAATAGGGGGATCTATAGATCCAGTTAATAC
1 GGACAACATAAATCTACTGGATTAGAATCAAATCTAATAGGGGGATCTATAGATCCAGTTAATAC
102554913 AATAATA
66 AATAATA
102554920 GGA
1 GGA
102554923 GTTTTAATTA
Statistics
Matches: 75, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
72 75 1.00
ACGTcount: A:0.43, C:0.14, G:0.18, T:0.26
Consensus pattern (72 bp):
GGACAACATAAATCTACTGGATTAGAATCAAATCTAATAGGGGGATCTATAGATCCAGTTAATAC
AATAATA
Found at i:102557090 original size:14 final size:15
Alignment explanation
Indices: 102557071--102557100 Score: 53
Period size: 14 Copynumber: 2.1 Consensus size: 15
102557061 ATATCATGTT
102557071 GCATGTTTTG-AATG
1 GCATGTTTTGTAATG
102557085 GCATGTTTTGTAATG
1 GCATGTTTTGTAATG
102557100 G
1 G
102557101 AATAGTAATG
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 10 0.67
15 5 0.33
ACGTcount: A:0.20, C:0.07, G:0.30, T:0.43
Consensus pattern (15 bp):
GCATGTTTTGTAATG
Found at i:102558724 original size:14 final size:15
Alignment explanation
Indices: 102558707--102558762 Score: 60
Period size: 18 Copynumber: 3.5 Consensus size: 15
102558697 TCTTAGATAT
102558707 GATATG-CAATCTTA
1 GATATGACAATCTTA
102558721 GATATGATACAATCTTA
1 GATATG--ACAATCTTA
102558738 GATATGATTGCAATCTTA
1 GATATGA---CAATCTTA
102558756 GATATGA
1 GATATGA
102558763 TATGCAATCT
Statistics
Matches: 36, Mismatches: 0, Indels: 8
0.82 0.00 0.18
Matches are distributed among these distances:
14 6 0.17
15 1 0.03
17 14 0.39
18 15 0.42
ACGTcount: A:0.38, C:0.11, G:0.16, T:0.36
Consensus pattern (15 bp):
GATATGACAATCTTA
Found at i:102558757 original size:35 final size:37
Alignment explanation
Indices: 102558694--102558783 Score: 143
Period size: 35 Copynumber: 2.5 Consensus size: 37
102558684 CAATGATATT
102558694 CAATCTTAGATATGATATGCAATCTTAGATATGATA-
1 CAATCTTAGATATGATATGCAATCTTAGATATGATAG
102558730 CAATCTTAGATATGAT-TGCAATCTTAGATATGATATG
1 CAATCTTAGATATGATATGCAATCTTAGATATGATA-G
102558767 CAATCTTAGA-A-GATATG
1 CAATCTTAGATATGATATG
102558784 ATTTTGTAAT
Statistics
Matches: 51, Mismatches: 0, Indels: 6
0.89 0.00 0.11
Matches are distributed among these distances:
35 22 0.43
36 19 0.37
37 10 0.20
ACGTcount: A:0.38, C:0.11, G:0.16, T:0.36
Consensus pattern (37 bp):
CAATCTTAGATATGATATGCAATCTTAGATATGATAG
Found at i:102558783 original size:17 final size:19
Alignment explanation
Indices: 102558686--102558776 Score: 152
Period size: 19 Copynumber: 4.9 Consensus size: 19
102558676 ATAATCTTCA
*
102558686 ATGATATTCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
102558705 ATGATATGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
102558724 ATGATA--CAATCTTAGAT
1 ATGATATGCAATCTTAGAT
102558741 ATGAT-TGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
102558759 ATGATATGCAATCTTAGA
1 ATGATATGCAATCTTAGA
102558777 AGATATGATT
Statistics
Matches: 68, Mismatches: 1, Indels: 6
0.91 0.01 0.08
Matches are distributed among these distances:
17 16 0.24
18 16 0.24
19 36 0.53
ACGTcount: A:0.37, C:0.11, G:0.14, T:0.37
Consensus pattern (19 bp):
ATGATATGCAATCTTAGAT
Found at i:102558802 original size:22 final size:22
Alignment explanation
Indices: 102558686--102558799 Score: 87
Period size: 19 Copynumber: 5.8 Consensus size: 22
102558676 ATAATCTTCA
*
102558686 ATGATATTCAATCTT---AGAT
1 ATGATATGCAATCTTAGAAGAT
102558705 ATGATATGCAATCTT---AGAT
1 ATGATATGCAATCTTAGAAGAT
102558724 ATGATA--CAATCTT---AGAT
1 ATGATATGCAATCTTAGAAGAT
102558741 ATGAT-TGCAATCTT---AGAT
1 ATGATATGCAATCTTAGAAGAT
102558759 ATGATATGCAATCTTAGAAGAT
1 ATGATATGCAATCTTAGAAGAT
* *
102558781 ATGATTTTGTAATCTTAGA
1 ATGA-TATGCAATCTTAGA
102558800 GATTTAATTT
Statistics
Matches: 85, Mismatches: 3, Indels: 10
0.87 0.03 0.10
Matches are distributed among these distances:
17 16 0.19
18 16 0.19
19 33 0.39
22 8 0.09
23 12 0.14
ACGTcount: A:0.37, C:0.10, G:0.15, T:0.39
Consensus pattern (22 bp):
ATGATATGCAATCTTAGAAGAT
Found at i:102559091 original size:18 final size:17
Alignment explanation
Indices: 102559068--102559101 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
102559058 TTTCCAAGAT
*
102559068 TTTTTTTATATATTTTAA
1 TTTTTTAATA-ATTTTAA
102559086 TTTTTTAATAATTTTA
1 TTTTTTAATAATTTTA
102559102 GTATCATATC
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (17 bp):
TTTTTTAATAATTTTAA
Found at i:102569378 original size:78 final size:78
Alignment explanation
Indices: 102569249--102569543 Score: 439
Period size: 78 Copynumber: 3.8 Consensus size: 78
102569239 CGAAGAAATA
** * ** * *
102569249 GATTTGGCATCTCCATATTTGACGGAAAGCAGATCGAAGACATAGCAGATCTGACCTTCATTGAA
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCAAAGACATAACAGATCTGACCTTCATTGAA
*
102569314 GCAGATCTAAGAT
66 GCAGATCAAAGAT
* * *
102569327 GATTTGGCATCTCTGTATTAGACAGGGAGCAGATCAAAGACACAGCAGATCTGACCTTCATTGAA
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCAAAGACATAACAGATCTGACCTTCATTGAA
102569392 GCAGATCAAAGAT
66 GCAGATCAAAGAT
*
102569405 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCAAAGACTTAACAGAT-TGGACCTTCATTGA
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCAAAGACATAACAGATCT-GACCTTCATTGA
* *
102569469 AGCAGGTCCAAGAT
65 AGCAGATCAAAGAT
*
102569483 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAACAGATCTGACCTTCAT
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCAAAGACATAACAGATCTGACCTTCAT
102569544 GTGTTTACAT
Statistics
Matches: 198, Mismatches: 17, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
77 1 0.01
78 196 0.99
79 1 0.01
ACGTcount: A:0.32, C:0.19, G:0.24, T:0.25
Consensus pattern (78 bp):
GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCAAAGACATAACAGATCTGACCTTCATTGAA
GCAGATCAAAGAT
Found at i:102569637 original size:45 final size:45
Alignment explanation
Indices: 102569483--102569711 Score: 189
Period size: 45 Copynumber: 5.1 Consensus size: 45
102569473 GGTCCAAGAT
*
102569483 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAACA
1 GATTTGGCATCTCTGTATTAGACGGAGAGCAGATCGAAG--ATAACA
* * * * * * *
102569530 GATCTGACCT-TCATGTGTTTACATC-GA-AGCAGATCCAAGATGACA
1 GATTTGGCATCTC-TGT-ATTAGA-CGGAGAGCAGATCGAAGATAACA
* * *
102569575 GATTTGGCATCTTTGTATTAGACGGAGAGCAAATCGGAGATAACA
1 GATTTGGCATCTCTGTATTAGACGGAGAGCAGATCGAAGATAACA
* **
102569620 GATTTGGCATCTCTGTATTAGACAGG-GAGCAGATTGAAGA-AGTA
1 GATTTGGCATCTCTGTATTAGAC-GGAGAGCAGATCGAAGATAACA
* * * * * *
102569664 GATTTGGCGTCTTTGTATTAGACGGGGAGCAAATCAAAGATAGCA
1 GATTTGGCATCTCTGTATTAGACGGAGAGCAGATCGAAGATAACA
102569709 GAT
1 GAT
102569712 ATCACCTTCC
Statistics
Matches: 143, Mismatches: 30, Indels: 20
0.74 0.16 0.10
Matches are distributed among these distances:
43 3 0.02
44 40 0.28
45 68 0.48
46 5 0.03
47 21 0.15
48 5 0.03
49 1 0.01
ACGTcount: A:0.32, C:0.15, G:0.27, T:0.26
Consensus pattern (45 bp):
GATTTGGCATCTCTGTATTAGACGGAGAGCAGATCGAAGATAACA
Found at i:102570108 original size:19 final size:19
Alignment explanation
Indices: 102570060--102570114 Score: 103
Period size: 18 Copynumber: 2.9 Consensus size: 19
102570050 ATAATCTTCA
102570060 ATGATATGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
102570079 ATGAT-TGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
102570097 ATGATATGCAATCTTAGA
1 ATGATATGCAATCTTAGA
102570115 AGATATGATT
Statistics
Matches: 35, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
18 18 0.51
19 17 0.49
ACGTcount: A:0.36, C:0.11, G:0.16, T:0.36
Consensus pattern (19 bp):
ATGATATGCAATCTTAGAT
Found at i:102570140 original size:22 final size:22
Alignment explanation
Indices: 102570060--102570137 Score: 80
Period size: 18 Copynumber: 3.8 Consensus size: 22
102570050 ATAATCTTCA
102570060 ATGATATGCAATCTT---AGAT
1 ATGATATGCAATCTTAGAAGAT
102570079 ATGAT-TGCAATCTT---AGAT
1 ATGATATGCAATCTTAGAAGAT
102570097 ATGATATGCAATCTTAGAAGAT
1 ATGATATGCAATCTTAGAAGAT
* *
102570119 ATGATTTTGTAATCTTAGA
1 ATGA-TATGCAATCTTAGA
102570138 GATTTAATTT
Statistics
Matches: 52, Mismatches: 2, Indels: 6
0.87 0.03 0.10
Matches are distributed among these distances:
18 18 0.35
19 14 0.27
22 8 0.15
23 12 0.23
ACGTcount: A:0.36, C:0.09, G:0.17, T:0.38
Consensus pattern (22 bp):
ATGATATGCAATCTTAGAAGAT
Found at i:102570429 original size:18 final size:17
Alignment explanation
Indices: 102570406--102570439 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
102570396 TTTCCCAGAT
*
102570406 TTTTTTTATATATTTTAA
1 TTTTTTAATA-ATTTTAA
102570424 TTTTTTAATAATTTTA
1 TTTTTTAATAATTTTA
102570440 GTATCATATT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (17 bp):
TTTTTTAATAATTTTAA
Found at i:102571768 original size:18 final size:18
Alignment explanation
Indices: 102571745--102571780 Score: 56
Period size: 18 Copynumber: 2.0 Consensus size: 18
102571735 GATATGATAC
102571745 TAAAAT-TATTAAAAAAAT
1 TAAAATATA-TAAAAAAAT
102571763 TAAAATATATAAAAAAAT
1 TAAAATATATAAAAAAAT
102571781 AGGGAAGCAT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 15 0.88
19 2 0.12
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (18 bp):
TAAAATATATAAAAAAAT
Found at i:102572068 original size:22 final size:21
Alignment explanation
Indices: 102572033--102572106 Score: 64
Period size: 22 Copynumber: 3.6 Consensus size: 21
102572023 ATAAGATATC
* *
102572033 TACAAATTAAATCTCTAAGAT
1 TACAAATCATATCTCTAAGAT
102572054 TACAAAATCATATCTTCTAAGAT
1 TAC-AAATCATATC-TCTAAGAT
* *
102572077 TGCATATCATA--TCTAAGAT
1 TACAAATCATATCTCTAAGAT
*
102572096 TGC-AATCATAT
1 TACAAATCATAT
102572107 ATAAGATTGT
Statistics
Matches: 45, Mismatches: 5, Indels: 8
0.78 0.09 0.14
Matches are distributed among these distances:
18 6 0.13
19 11 0.24
21 3 0.07
22 15 0.33
23 10 0.22
ACGTcount: A:0.42, C:0.16, G:0.07, T:0.35
Consensus pattern (21 bp):
TACAAATCATATCTCTAAGAT
Found at i:102572093 original size:19 final size:19
Alignment explanation
Indices: 102572069--102572159 Score: 125
Period size: 19 Copynumber: 4.9 Consensus size: 19
102572059 AATCATATCT
102572069 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
102572088 TCTAAGATTGCA-ATCATA
1 TCTAAGATTGCATATCATA
*
102572106 TATAAGATTG--TATCATA
1 TCTAAGATTGCATATCATA
*
102572123 TCTAAGATTGTATATCATA
1 TCTAAGATTGCATATCATA
* *
102572142 TCTACGATTTCATATCAT
1 TCTAAGATTGCATATCAT
102572160 TGAAGATTAT
Statistics
Matches: 64, Mismatches: 5, Indels: 6
0.85 0.07 0.08
Matches are distributed among these distances:
17 15 0.23
18 15 0.23
19 34 0.53
ACGTcount: A:0.36, C:0.14, G:0.10, T:0.40
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:102572123 original size:35 final size:37
Alignment explanation
Indices: 102572071--102572142 Score: 112
Period size: 35 Copynumber: 2.0 Consensus size: 37
102572061 TCATATCTTC
102572071 TAAGATTGCATATCATATCTAAGATTGCA-ATCATATA
1 TAAGATTG-ATATCATATCTAAGATTGCATATCATATA
*
102572108 TAAGATTG-TATCATATCTAAGATTGTATATCATAT
1 TAAGATTGATATCATATCTAAGATTGCATATCATAT
102572143 CTACGATTTC
Statistics
Matches: 33, Mismatches: 1, Indels: 3
0.89 0.03 0.08
Matches are distributed among these distances:
35 18 0.55
36 7 0.21
37 8 0.24
ACGTcount: A:0.39, C:0.11, G:0.11, T:0.39
Consensus pattern (37 bp):
TAAGATTGATATCATATCTAAGATTGCATATCATATA
Found at i:102572758 original size:21 final size:21
Alignment explanation
Indices: 102572734--102572830 Score: 81
Period size: 21 Copynumber: 4.7 Consensus size: 21
102572724 TTTTGTTTAA
*
102572734 CTCTTACGAGTTTCTATTCAG
1 CTCTTACGAGCTTCTATTCAG
* * *
102572755 CTCTTATGAGCTTCTGTTCAA
1 CTCTTACGAGCTTCTATTCAG
* * * * *
102572776 CTTTTATGAGTTTCTGTTTAG
1 CTCTTACGAGCTTCTATTCAG
*
102572797 CTCTTACGAGCTTCTATTTAG
1 CTCTTACGAGCTTCTATTCAG
*
102572818 -T-TTTCGAGCTTCT
1 CTCTTACGAGCTTCT
102572831 GTTGCAGCAT
Statistics
Matches: 63, Mismatches: 13, Indels: 2
0.81 0.17 0.03
Matches are distributed among these distances:
19 11 0.17
20 1 0.02
21 51 0.81
ACGTcount: A:0.16, C:0.21, G:0.15, T:0.47
Consensus pattern (21 bp):
CTCTTACGAGCTTCTATTCAG
Found at i:102572767 original size:42 final size:42
Alignment explanation
Indices: 102572714--102572811 Score: 124
Period size: 42 Copynumber: 2.3 Consensus size: 42
102572704 TTTTTTCAAT
* * *
102572714 TCTTACAAGCTTTTGTTTAACTCTTACGAGTTTCTATTCAGC
1 TCTTACGAGCTTCTGTTCAACTCTTACGAGTTTCTATTCAGC
* * * * *
102572756 TCTTATGAGCTTCTGTTCAACTTTTATGAGTTTCTGTTTAGC
1 TCTTACGAGCTTCTGTTCAACTCTTACGAGTTTCTATTCAGC
102572798 TCTTACGAGCTTCT
1 TCTTACGAGCTTCT
102572812 ATTTAGTTTT
Statistics
Matches: 47, Mismatches: 9, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
42 47 1.00
ACGTcount: A:0.18, C:0.20, G:0.14, T:0.47
Consensus pattern (42 bp):
TCTTACGAGCTTCTGTTCAACTCTTACGAGTTTCTATTCAGC
Found at i:102575153 original size:31 final size:30
Alignment explanation
Indices: 102575114--102575172 Score: 91
Period size: 31 Copynumber: 1.9 Consensus size: 30
102575104 TTTCACAATA
*
102575114 GAGGTTTTGGCAACCAATTTTTCCAAAACT
1 GAGGTTTTGGCAACCAATTTTGCCAAAACT
*
102575144 GAGGCTTTTGGTAACCAATTTTGCCAAAA
1 GAGG-TTTTGGCAACCAATTTTGCCAAAA
102575173 ATATTTTCTA
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
30 4 0.15
31 22 0.85
ACGTcount: A:0.31, C:0.19, G:0.19, T:0.32
Consensus pattern (30 bp):
GAGGTTTTGGCAACCAATTTTGCCAAAACT
Found at i:102576352 original size:30 final size:30
Alignment explanation
Indices: 102576316--102576374 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
102576306 ATTACCGAAT
*
102576316 TAAACCTAAAAAAAGGCTTAGGA-ACCAAAC
1 TAAACCTAAAAAAAAGCTTA-GATACCAAAC
102576346 TAAACCTAAAAAAAAGCTTAGATACCAAA
1 TAAACCTAAAAAAAAGCTTAGATACCAAA
102576375 TTAGCAAAAA
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
29 2 0.07
30 25 0.93
ACGTcount: A:0.56, C:0.19, G:0.10, T:0.15
Consensus pattern (30 bp):
TAAACCTAAAAAAAAGCTTAGATACCAAAC
Found at i:102578764 original size:20 final size:19
Alignment explanation
Indices: 102578739--102578780 Score: 57
Period size: 20 Copynumber: 2.2 Consensus size: 19
102578729 CTTTTCTATC
102578739 CTTCTCTCATCTCTTCCCCT
1 CTTCTCTCATCT-TTCCCCT
* *
102578759 CTTCTCTCTTCTTTCTCCT
1 CTTCTCTCATCTTTCCCCT
102578778 CTT
1 CTT
102578781 GCCGATTCTC
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
19 9 0.45
20 11 0.55
ACGTcount: A:0.02, C:0.45, G:0.00, T:0.52
Consensus pattern (19 bp):
CTTCTCTCATCTTTCCCCT
Found at i:102580088 original size:20 final size:20
Alignment explanation
Indices: 102580045--102580090 Score: 58
Period size: 20 Copynumber: 2.4 Consensus size: 20
102580035 ACTGTTTTAT
*
102580045 TATGGG-CCAACTGTATTAA
1 TATGGGCCCAACTGTATCAA
* *
102580064 AATGGGCCCAACTGTGTCAA
1 TATGGGCCCAACTGTATCAA
102580084 TATGGGC
1 TATGGGC
102580091 AAGGCCCAAT
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
19 5 0.23
20 17 0.77
ACGTcount: A:0.28, C:0.20, G:0.26, T:0.26
Consensus pattern (20 bp):
TATGGGCCCAACTGTATCAA
Found at i:102585704 original size:3 final size:3
Alignment explanation
Indices: 102585696--102585721 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
102585686 ATTCGATCTT
102585696 TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TT
102585722 TAAAAGATTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (3 bp):
TTA
Found at i:102587802 original size:3 final size:3
Alignment explanation
Indices: 102587796--102587850 Score: 83
Period size: 3 Copynumber: 18.0 Consensus size: 3
102587786 AAAAATGATG
* *
102587796 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA TTTA CTA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA -ATA ATA
102587842 ATA ATA ATA
1 ATA ATA ATA
102587851 GTAGTAGTAG
Statistics
Matches: 48, Mismatches: 3, Indels: 2
0.91 0.06 0.04
Matches are distributed among these distances:
3 46 0.96
4 2 0.04
ACGTcount: A:0.62, C:0.02, G:0.00, T:0.36
Consensus pattern (3 bp):
ATA
Done.