Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A06
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 115140250
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2234201 characters in sequence are not A, C, G, or T
File 303 of 345
Found at i:102588444 original size:42 final size:42
Alignment explanation
Indices: 102588230--102588436 Score: 229
Period size: 42 Copynumber: 5.0 Consensus size: 42
102588220 AAGTAAACTA
** ** *
102588230 GAAAAGTAAACAGACCTCC-CACCTAAGTCTCTAAATGCAAT
1 GAAAAGTAAATGGACCTCCACACCTGGGCCTCTAAATGCAAT
* * *
102588271 GAAAAGTCAAAT-GACCTCCACACTTGGGCCCCCAAATGCAAT
1 GAAAAGT-AAATGGACCTCCACACCTGGGCCTCTAAATGCAAT
* * * * *
102588313 GTAAAGTCAATGGACCTCCATACCTAGGTCTCTAAATGCAAT
1 GAAAAGTAAATGGACCTCCACACCTGGGCCTCTAAATGCAAT
* * * *
102588355 GGAAAGTGAATGGACCTCAACACCCGGGCCTCTAAATGCAAT
1 GAAAAGTAAATGGACCTCCACACCTGGGCCTCTAAATGCAAT
*
102588397 GAAAAGTAAATGGACCTCCACACCTGTGCCTCTAAATGCA
1 GAAAAGTAAATGGACCTCCACACCTGGGCCTCTAAATGCA
102588437 TTAAAAAGCG
Statistics
Matches: 136, Mismatches: 27, Indels: 5
0.81 0.16 0.03
Matches are distributed among these distances:
41 17 0.12
42 119 0.88
ACGTcount: A:0.36, C:0.27, G:0.17, T:0.20
Consensus pattern (42 bp):
GAAAAGTAAATGGACCTCCACACCTGGGCCTCTAAATGCAAT
Found at i:102599727 original size:131 final size:130
Alignment explanation
Indices: 102599465--102599947 Score: 411
Period size: 131 Copynumber: 3.7 Consensus size: 130
102599455 TTGCCTCACC
* * * * * * *
102599465 TTAGAAAATACGAGTGAAATTTCGAAGAGACATTCGATTATTTTGAACAAATGGGAGAGTGCAAC
1 TTAGAAAATATGAGTGAAATTCCGAAGAGATATTCGATTATTTTGAACAAACGAGAAAGCGCAAC
* * **
102599530 CCAGCACGATAGGGCACTATTCCCCGAATTTCCAAACATCGAACATTTCTTTCGTTTTAAGAGTT
66 CCAGCACGATAGGGCACGATT-CCCGAATTGCCAAACATCGAACATACCTTTCGTTTTAAGAGTT
102599595 T
130 T
* * *
102599596 TTAGAAAATGTGAGTGAAATTCCGAAGAGATATTCAATTATTTTGAACAAACGAAAAAGCGCAAC
1 TTAGAAAATATGAGTGAAATTCCGAAGAGATATTCGATTATTTTGAACAAACGAGAAAGCGCAAC
* ** * *
102599661 CCAGCACGGTAGGGCACGATTTTCGAATTGCCAAACATCGAACGTCACCTTT-GTTTTAAAGGGT
66 CCAGCACGATAGGGCACGATTCCCGAATTGCCAAACATCGAACAT-ACCTTTCGTTTT-AAGAGT
102599725 TT
129 TT
* * * * * * *
102599727 TCTTGAAAAACATGAGTGAAA-ACCTAA-AGGAATATTCGATGATTTTGAACAAACGAGAAATCA
1 T-TAG-AAAATATGAGTGAAATTCCGAAGA-G-ATATTCGATTATTTTGAACAAACGAGAAAGCG
* ** * * * *
102599790 CAACCCAGCACGATAGGGCATGATTCCCGAATTGTTAAACACTATGTA-TTGCC-TTCGTTTTAA
62 CAACCCAGCACGATAGGGCACGATTCCCGAATTGCCAAACA-T-CGAACATACCTTTCGTTTTAA
*
102599853 GGGATTT
125 GAG-TTT
* * * ** * * **
102599860 TTAGAAAACACGACTGAAATTTTGAAGGGATATTCGATTACTTTGAACAAAC-ACGAAATTGCAA
1 TTAGAAAATATGAGTGAAATTCCGAAGAGATATTCGATTATTTTGAACAAACGA-GAAAGCGCAA
* * *
102599924 CCCAACATGTTAGGGCACGATTCC
65 CCCAGCACGATAGGGCACGATTCC
102599948 GTAAATTTCC
Statistics
Matches: 284, Mismatches: 55, Indels: 26
0.78 0.15 0.07
Matches are distributed among these distances:
130 26 0.09
131 149 0.52
132 19 0.07
133 86 0.30
134 2 0.01
135 2 0.01
ACGTcount: A:0.35, C:0.18, G:0.19, T:0.27
Consensus pattern (130 bp):
TTAGAAAATATGAGTGAAATTCCGAAGAGATATTCGATTATTTTGAACAAACGAGAAAGCGCAAC
CCAGCACGATAGGGCACGATTCCCGAATTGCCAAACATCGAACATACCTTTCGTTTTAAGAGTTT
Found at i:102600880 original size:32 final size:33
Alignment explanation
Indices: 102600812--102600883 Score: 87
Period size: 32 Copynumber: 2.2 Consensus size: 33
102600802 GGTAATAAAT
*
102600812 AAAATAT-TTTAAAATAAACAAATAAAGTTTTA
1 AAAATATATTTAAAATAAACAAATAAAGTGTTA
* *
102600844 AAAATATATTTAAAATAAA-ATATAAA-TAGTTC
1 AAAATATATTTAAAATAAACAAATAAAGT-GTTA
102600876 AAAATATA
1 AAAATATA
102600884 ATACATAAAA
Statistics
Matches: 35, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
31 1 0.03
32 23 0.66
33 11 0.31
ACGTcount: A:0.61, C:0.03, G:0.03, T:0.33
Consensus pattern (33 bp):
AAAATATATTTAAAATAAACAAATAAAGTGTTA
Found at i:102604187 original size:4 final size:4
Alignment explanation
Indices: 102604178--102604208 Score: 62
Period size: 4 Copynumber: 7.8 Consensus size: 4
102604168 CTCGAATATT
102604178 TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTT
1 TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTT
102604209 TTTTTACCAT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 27 1.00
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.77
Consensus pattern (4 bp):
TTTA
Found at i:102605150 original size:21 final size:21
Alignment explanation
Indices: 102605103--102605143 Score: 75
Period size: 20 Copynumber: 2.0 Consensus size: 21
102605093 TTTAACATGA
102605103 ATTAAAAATTCATAAAAAGTT
1 ATTAAAAATTCATAAAAAGTT
102605124 ATTAAAAATT-ATAAAAAGTT
1 ATTAAAAATTCATAAAAAGTT
102605144 TTTTAAATAT
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 10 0.50
21 10 0.50
ACGTcount: A:0.59, C:0.02, G:0.05, T:0.34
Consensus pattern (21 bp):
ATTAAAAATTCATAAAAAGTT
Found at i:102605156 original size:20 final size:21
Alignment explanation
Indices: 102605104--102605150 Score: 69
Period size: 21 Copynumber: 2.2 Consensus size: 21
102605094 TTAACATGAA
*
102605104 TTAAAAATTCATAAAAAG-TTA
1 TTAAAAATT-ATAAAAAGTTTT
102605125 TTAAAAATTATAAAAAGTTTT
1 TTAAAAATTATAAAAAGTTTT
102605146 TTAAA
1 TTAAA
102605151 TATATAGAGA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
20 8 0.33
21 16 0.67
ACGTcount: A:0.55, C:0.02, G:0.04, T:0.38
Consensus pattern (21 bp):
TTAAAAATTATAAAAAGTTTT
Found at i:102605356 original size:15 final size:15
Alignment explanation
Indices: 102605336--102605368 Score: 66
Period size: 15 Copynumber: 2.2 Consensus size: 15
102605326 TATTAAAAAT
102605336 AAATAAAAGGTTATA
1 AAATAAAAGGTTATA
102605351 AAATAAAAGGTTATA
1 AAATAAAAGGTTATA
102605366 AAA
1 AAA
102605369 ATTATAGAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.64, C:0.00, G:0.12, T:0.24
Consensus pattern (15 bp):
AAATAAAAGGTTATA
Found at i:102606021 original size:19 final size:19
Alignment explanation
Indices: 102605996--102606121 Score: 183
Period size: 19 Copynumber: 6.9 Consensus size: 19
102605986 ATAATCTTCA
102605996 ATGATATGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
*
102606015 CTGATATGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
102606034 ATGATA--CAATCTTAGAT
1 ATGATATGCAATCTTAGAT
102606051 ATGAT-TGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
*
102606069 AT-A-ATACAATCTTAGAT
1 ATGATATGCAATCTTAGAT
102606086 ATGAT-TGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
*
102606104 ATGATATACAATCTTAGA
1 ATGATATGCAATCTTAGA
102606122 AGATATGATT
Statistics
Matches: 96, Mismatches: 5, Indels: 12
0.85 0.04 0.11
Matches are distributed among these distances:
17 31 0.32
18 31 0.32
19 34 0.35
ACGTcount: A:0.38, C:0.12, G:0.13, T:0.37
Consensus pattern (19 bp):
ATGATATGCAATCTTAGAT
Found at i:102606036 original size:14 final size:15
Alignment explanation
Indices: 102606017--102606107 Score: 76
Period size: 18 Copynumber: 5.5 Consensus size: 15
102606007 TCTTAGATCT
102606017 GATATG-CAATCTTA
1 GATATGACAATCTTA
102606031 GATATGATACAATCTTA
1 GATATG--ACAATCTTA
102606048 GATATGATTGCAATCTTA
1 GATATGA---CAATCTTA
*
102606066 GATATAATACAATCTTA
1 GATAT--GACAATCTTA
102606083 GATATGATTGCAATCTTA
1 GATATGA---CAATCTTA
102606101 GATATGA
1 GATATGA
102606108 TATACAATCT
Statistics
Matches: 64, Mismatches: 2, Indels: 18
0.76 0.02 0.21
Matches are distributed among these distances:
14 6 0.09
15 2 0.03
17 27 0.42
18 28 0.44
20 1 0.02
ACGTcount: A:0.38, C:0.11, G:0.14, T:0.36
Consensus pattern (15 bp):
GATATGACAATCTTA
Found at i:102606066 original size:35 final size:35
Alignment explanation
Indices: 102606004--102606121 Score: 191
Period size: 35 Copynumber: 3.3 Consensus size: 35
102605994 CAATGATATG
*
102606004 CAATCTTAGATCTGATATGCAATCTTAGATATGATA
1 CAATCTTAGATATGAT-TGCAATCTTAGATATGATA
*
102606040 CAATCTTAGATATGATTGCAATCTTAGATATAATA
1 CAATCTTAGATATGATTGCAATCTTAGATATGATA
102606075 CAATCTTAGATATGATTGCAATCTTAGATATGATATA
1 CAATCTTAGATATGATTGCAATCTTAGATATG--ATA
102606112 CAATCTTAGA
1 CAATCTTAGA
102606122 AGATATGATT
Statistics
Matches: 77, Mismatches: 3, Indels: 3
0.93 0.04 0.04
Matches are distributed among these distances:
35 49 0.64
36 15 0.19
37 13 0.17
ACGTcount: A:0.38, C:0.13, G:0.13, T:0.36
Consensus pattern (35 bp):
CAATCTTAGATATGATTGCAATCTTAGATATGATA
Found at i:102612375 original size:11 final size:10
Alignment explanation
Indices: 102612359--102612406 Score: 53
Period size: 11 Copynumber: 4.5 Consensus size: 10
102612349 CTTCTATTTC
102612359 AAAAAAAAAGG
1 AAAAAAAAA-G
102612370 AAAAAAGAAAG
1 AAAAAA-AAAG
102612381 AAAAAAATAA-
1 AAAAAAA-AAG
102612391 AAAGAAAAAAG
1 AAA-AAAAAAG
102612402 AAAAA
1 AAAAA
102612407 TGGAGAGGCG
Statistics
Matches: 33, Mismatches: 0, Indels: 9
0.79 0.00 0.21
Matches are distributed among these distances:
10 8 0.24
11 22 0.67
12 3 0.09
ACGTcount: A:0.85, C:0.00, G:0.12, T:0.02
Consensus pattern (10 bp):
AAAAAAAAAG
Found at i:102612392 original size:18 final size:19
Alignment explanation
Indices: 102612371--102612407 Score: 58
Period size: 18 Copynumber: 2.0 Consensus size: 19
102612361 AAAAAAAGGA
*
102612371 AAAAAGAAAGAA-AAAAAT
1 AAAAAGAAAAAAGAAAAAT
102612389 AAAAAGAAAAAAGAAAAAT
1 AAAAAGAAAAAAGAAAAAT
102612408 GGAGAGGCGA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 11 0.65
19 6 0.35
ACGTcount: A:0.84, C:0.00, G:0.11, T:0.05
Consensus pattern (19 bp):
AAAAAGAAAAAAGAAAAAT
Found at i:102613602 original size:205 final size:205
Alignment explanation
Indices: 102613245--102614392 Score: 1850
Period size: 205 Copynumber: 5.7 Consensus size: 205
102613235 GATCTGGCTA
*
102613245 AAGCAAGATCCAAGATGGTTTGGCATCCTTGTGCTTACAAGGAGCAAATCGAAGACATAGCTGAT
1 AAGC-AGATCCAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAAGACATAGCTGAT
* ** * *
102613310 TCGATTTTCGCGTGCTTACGCTGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGAGA
65 TTGGCTTTCACGTGCTTACACTGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGAGA
* *
102613375 ACAAATCGAAGTTTGGCATCTCCATTTCGACGGAGAGTAGATACATAGCAGATCTAACCTTCAGA
130 ACAAATCGAAGTCTGGCATCTCCATTTCGACGGAGAGCAGATACATAGCAGATCTAACCTTCAGA
102613440 TGTTTATACTG
195 TGTTTATACTG
** *
102613451 AAATAGATCCAAGATGGTTTGGCATCCTTGTGCTTACAAGGAATAAATCGAAGACATAGCTGATT
1 AAGCAGATCCAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAAGACATAGCTGATT
* *
102613516 TGGCTTTCACGTGTTTACACTGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGCCAGAGAA
66 TGGCTTTCACGTGCTTACACTGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGAGAA
*
102613581 CAAATCGAAGTCTGGCATCTCCATTTCGACAGAGAGCAGATACATAGCAGATCTAACCTTCAGAT
131 CAAATCGAAGTCTGGCATCTCCATTTCGACGGAGAGCAGATACATAGCAGATCTAACCTTCAGAT
102613646 GTTTATACTG
196 GTTTATACTG
* *
102613656 AAGCAGATCCAAGATGGTTTGGCATACTTGTGCTTACAAGGAACAAATCAAAGACATAGCTGATT
1 AAGCAGATCCAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAAGACATAGCTGATT
* *
102613721 TGGCTTTCACGTGCTTACAATGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGCCAGAGAA
66 TGGCTTTCACGTGCTTACACTGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGAGAA
* *
102613786 CAAATCAAAGTTTGGCATCTCCATTTCGACGGAGAGCAGATACATAGCAGATCTAACCTTCAGAT
131 CAAATCGAAGTCTGGCATCTCCATTTCGACGGAGAGCAGATACATAGCAGATCTAACCTTCAGAT
102613851 GTTTATACTG
196 GTTTATACTG
*
102613861 AAGCAGATCCAAGATGGTTTGGCATCCTTGTGCTTACGAGGAACAAATCGAAGACATAGCTGATT
1 AAGCAGATCCAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAAGACATAGCTGATT
*
102613926 TGGCTTTCACGTGCTTACGA-TGAAGCAAATCTAAGATGATTTGGCATCTCTATATTGTCAGAGA
66 TGGCTTTCACGTGCTTAC-ACTGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGAGA
*
102613990 ACAAATCGAAGTCTGGCATCTCTATTTCGACGGAGAGCAGATACATAGCAGATCTAACCTTCAGA
130 ACAAATCGAAGTCTGGCATCTCCATTTCGACGGAGAGCAGATACATAGCAGATCTAACCTTCAGA
102614055 TGTTTATACTG
195 TGTTTATACTG
102614066 AAGCAGATCCAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAAGACATAGCTGATT
1 AAGCAGATCCAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAAGACATAGCTGATT
102614131 TGGCTTTCACGTGCTTACGA-TGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGT------
66 TGGCTTTCACGTGCTTAC-ACTGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGAGA
* *
102614189 -C--A--G-A-----GCATCTCCATTTCTACGGAGAGCAGATACATAGCAGATCTAACCTTCATA
130 ACAAATCGAAGTCTGGCATCTCCATTTCGACGGAGAGCAGATACATAGCAGATCTAACCTTCAGA
102614243 TGTTTATACTG
195 TGTTTATACTG
*
102614254 AAGCAGATCCAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAAGGCATAGCTGATT
1 AAGCAGATCCAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAAGACATAGCTGATT
* * ** *
102614319 TGGTTTTCGCGTGC-TATGCTGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTTAGAGAA
66 TGGCTTTCACGTGCTTACACTGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGAGAA
102614383 CAAATCGAAG
131 CAAATCGAAG
102614393 AAACAGATTT
Statistics
Matches: 885, Mismatches: 42, Indels: 36
0.92 0.04 0.04
Matches are distributed among these distances:
187 40 0.05
188 134 0.15
193 1 0.00
194 2 0.00
196 2 0.00
198 2 0.00
199 1 0.00
205 700 0.79
206 3 0.00
ACGTcount: A:0.31, C:0.19, G:0.22, T:0.29
Consensus pattern (205 bp):
AAGCAGATCCAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAAGACATAGCTGATT
TGGCTTTCACGTGCTTACACTGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGAGAA
CAAATCGAAGTCTGGCATCTCCATTTCGACGGAGAGCAGATACATAGCAGATCTAACCTTCAGAT
GTTTATACTG
Found at i:102614687 original size:261 final size:260
Alignment explanation
Indices: 102614218--102614736 Score: 763
Period size: 261 Copynumber: 2.0 Consensus size: 260
102614208 CGGAGAGCAG
* *
102614218 ATACATAGCAGATCTAACCTTCATATGTTTATACTGAAGCAGATCCAAGATGGTTTGGCATCCTT
1 ATACATAGCAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGCATCCTT
* * * * * * * *
102614283 GTGCTTACAAGGAACAAATCGAAGGCATAGCTGATTTGGTTTTCGCGTGCTATGCTGAAGCAAAT
66 GTGCTTACAAGGAACAAATCAAAGACACAACAGATTTGGCTTTCACGTGCTACGCTGAAGCAAAT
* * *
102614348 CTAAGATGATTTGGCATCTCTGTATTGTTAGAGAACAAATCGAAGAAACAGATTTGGCGTCTCTG
131 CTAAGATGATTTGGCATATCTGTATTGTCAGAAAACAAATCGAAGAAACAGATTTGGCGTCTCTG
*
102614413 TATTCGGCGGAGAGCAGATCGAAGATATCAACAGGACAGTAATAAGTTTACAAGAAGCAGATTAA
196 TATTCGACGGAGAGCAGATCGAAGATATCAACAGGACAGTAATAAGTTTACAAGAAGCAGATTAA
*
102614478 ATACATAGCAGATCTGACCTTCAGATGATTT-TACTGAAGCAGATCCAAGATGATTTGGCATCCT
1 ATACATAGCAGATCTAACCTTCAGATG-TTTATACTGAAGCAGATCCAAGATGATTTGGCATCCT
* *
102614542 TGTG-TTCACAAGGAGCAAATCAAAGACACAACAGATTTGGCTTTCACGTGTTTACGCTGAAGCA
65 TGTGCTT-ACAAGGAACAAATCAAAGACACAACAGATTTGGCTTTCACGTG-CTACGCTGAAGCA
* *
102614606 GATCTAAGATGATTTGGCATATCTGTATTGTCAGAAAACAAATCGAAGAAGCAGATTTGGCGTCT
128 AATCTAAGATGATTTGGCATATCTGTATTGTCAGAAAACAAATCGAAGAAACAGATTTGGCGTCT
* * ** * * *
102614671 CTGTGTTCGACGGAGAGCAGATCGAAGATATCAACATGACAGTCTTGAGTTTGCAATAAGCAGAT
193 CTGTATTCGACGGAGAGCAGATCGAAGATATCAACAGGACAGTAATAAGTTTACAAGAAGCAGAT
102614736 T
258 T
102614737 GAGGACCATG
Statistics
Matches: 230, Mismatches: 26, Indels: 5
0.88 0.10 0.02
Matches are distributed among these distances:
259 2 0.01
260 96 0.42
261 132 0.57
ACGTcount: A:0.33, C:0.17, G:0.23, T:0.28
Consensus pattern (260 bp):
ATACATAGCAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGCATCCTT
GTGCTTACAAGGAACAAATCAAAGACACAACAGATTTGGCTTTCACGTGCTACGCTGAAGCAAAT
CTAAGATGATTTGGCATATCTGTATTGTCAGAAAACAAATCGAAGAAACAGATTTGGCGTCTCTG
TATTCGACGGAGAGCAGATCGAAGATATCAACAGGACAGTAATAAGTTTACAAGAAGCAGATTAA
Found at i:102615001 original size:17 final size:18
Alignment explanation
Indices: 102614979--102615021 Score: 61
Period size: 19 Copynumber: 2.4 Consensus size: 18
102614969 ATGGAAATAT
*
102614979 AATCTTCAA-TGATATGC
1 AATCTTAAAGTGATATGC
102614996 AATCTTAAATGTGATATGC
1 AATCTTAAA-GTGATATGC
102615015 AATCTTA
1 AATCTTA
102615022 GATATGATAC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
17 8 0.35
19 15 0.65
ACGTcount: A:0.37, C:0.14, G:0.12, T:0.37
Consensus pattern (18 bp):
AATCTTAAAGTGATATGC
Found at i:102615012 original size:19 final size:19
Alignment explanation
Indices: 102614987--102615112 Score: 165
Period size: 19 Copynumber: 6.9 Consensus size: 19
102614977 ATAATCTTCA
*
102614987 ATGATATGCAATCTTAAAT
1 ATGATATGCAATCTTAGAT
*
102615006 GTGATATGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
102615025 ATGATA--CAATCTTAGAT
1 ATGATATGCAATCTTAGAT
*
102615042 ATAAT-TGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
102615060 ATGATA--CAATCTTAGAT
1 ATGATATGCAATCTTAGAT
*
102615077 ATGAT-TGTAATCTTAGAT
1 ATGATATGCAATCTTAGAT
*
102615095 ATGATATACAATCTTAGA
1 ATGATATGCAATCTTAGA
102615113 AGATATGATT
Statistics
Matches: 93, Mismatches: 8, Indels: 12
0.82 0.07 0.11
Matches are distributed among these distances:
17 31 0.33
18 30 0.32
19 32 0.34
ACGTcount: A:0.39, C:0.10, G:0.13, T:0.37
Consensus pattern (19 bp):
ATGATATGCAATCTTAGAT
Found at i:102615036 original size:17 final size:17
Alignment explanation
Indices: 102614995--102615112 Score: 128
Period size: 17 Copynumber: 6.6 Consensus size: 17
102614985 CAATGATATG
* *
102614995 CAATCTTAAATGTGATA
1 CAATCTTAGATATGATA
102615012 TGCAATCTTAGATATGATA
1 --CAATCTTAGATATGATA
* *
102615031 CAATCTTAGATATAATTG
1 CAATCTTAGATATGA-TA
102615049 CAATCTTAGATATGATA
1 CAATCTTAGATATGATA
*
102615066 CAATCTTAGATATGATTG
1 CAATCTTAGATATGA-TA
*
102615084 TAATCTTAGATATGATATA
1 CAATCTTAGATATG--ATA
102615103 CAATCTTAGA
1 CAATCTTAGA
102615113 AGATATGATT
Statistics
Matches: 85, Mismatches: 10, Indels: 8
0.83 0.10 0.08
Matches are distributed among these distances:
17 30 0.35
18 29 0.34
19 25 0.29
20 1 0.01
ACGTcount: A:0.39, C:0.11, G:0.13, T:0.37
Consensus pattern (17 bp):
CAATCTTAGATATGATA
Found at i:102615056 original size:35 final size:35
Alignment explanation
Indices: 102615012--102615112 Score: 166
Period size: 35 Copynumber: 2.8 Consensus size: 35
102615002 AAATGTGATA
102615012 TGCAATCTTAGATATGATACAATCTTAGATATAAT
1 TGCAATCTTAGATATGATACAATCTTAGATATAAT
*
102615047 TGCAATCTTAGATATGATACAATCTTAGATATGAT
1 TGCAATCTTAGATATGATACAATCTTAGATATAAT
*
102615082 TGTAATCTTAGATATGATATACAATCTTAGA
1 TGCAATCTTAGATATG--ATACAATCTTAGA
102615113 AGATATGATT
Statistics
Matches: 62, Mismatches: 2, Indels: 2
0.94 0.03 0.03
Matches are distributed among these distances:
35 49 0.79
37 13 0.21
ACGTcount: A:0.39, C:0.11, G:0.13, T:0.38
Consensus pattern (35 bp):
TGCAATCTTAGATATGATACAATCTTAGATATAAT
Found at i:102615138 original size:22 final size:20
Alignment explanation
Indices: 102615067--102615148 Score: 62
Period size: 18 Copynumber: 4.0 Consensus size: 20
102615057 GATATGATAC
102615067 AATCTT-AGATATGA-TTGT
1 AATCTTGAGATATGATTTGT
* **
102615085 AATCTT-AGATATGATATAC
1 AATCTTGAGATATGATTTGT
102615104 AATCTTAGAAGATATGATTTTGT
1 AATCTT-G-AGATATGA-TTTGT
* *
102615127 AATCTTGGAGATTTAATTTGT
1 AATCTT-GAGATATGATTTGT
102615148 A
1 A
102615149 GATATCCTTT
Statistics
Matches: 50, Mismatches: 9, Indels: 7
0.76 0.14 0.11
Matches are distributed among these distances:
18 14 0.28
19 7 0.14
21 6 0.12
22 14 0.28
23 9 0.18
ACGTcount: A:0.35, C:0.06, G:0.16, T:0.43
Consensus pattern (20 bp):
AATCTTGAGATATGATTTGT
Found at i:102616241 original size:21 final size:19
Alignment explanation
Indices: 102616159--102616249 Score: 62
Period size: 19 Copynumber: 4.7 Consensus size: 19
102616149 TTTTCTAAAC
* *
102616159 AAATTTTATAA-CATTTAA
1 AAATTTTATAATTATTTAT
*
102616177 AAATTTTCTATATT-TTTATT
1 AAATTTTATA-ATTATTTA-T
**
102616197 AGCTTTTATAATTATTTAT
1 AAATTTTATAATTATTTAT
102616216 AAATTTCTAATAATT-TTTAAT
1 AAATTT-T-ATAATTATTT-AT
*
102616237 GAATTTTATAATT
1 AAATTTTATAATT
102616250 CATGTTAAAA
Statistics
Matches: 57, Mismatches: 9, Indels: 13
0.72 0.11 0.16
Matches are distributed among these distances:
18 9 0.16
19 19 0.33
20 16 0.28
21 13 0.23
ACGTcount: A:0.38, C:0.04, G:0.02, T:0.55
Consensus pattern (19 bp):
AAATTTTATAATTATTTAT
Found at i:102616860 original size:16 final size:18
Alignment explanation
Indices: 102616821--102616859 Score: 71
Period size: 18 Copynumber: 2.2 Consensus size: 18
102616811 CAGACACAAG
102616821 AAAAATAAAGTCAATAAA
1 AAAAATAAAGTCAATAAA
102616839 AAAAATAAAGTCAA-AAA
1 AAAAATAAAGTCAATAAA
102616856 AAAA
1 AAAA
102616860 TTACAAAATT
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
17 7 0.33
18 14 0.67
ACGTcount: A:0.77, C:0.05, G:0.05, T:0.13
Consensus pattern (18 bp):
AAAAATAAAGTCAATAAA
Found at i:102618915 original size:10 final size:9
Alignment explanation
Indices: 102618896--102618929 Score: 50
Period size: 10 Copynumber: 3.6 Consensus size: 9
102618886 AATAGACATG
102618896 AAAATAAAT
1 AAAATAAAT
102618905 AAAACTAAAT
1 AAAA-TAAAT
102618915 AAGAATAAAT
1 AA-AATAAAT
102618925 AAAAT
1 AAAAT
102618930 TACACAAGTG
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
9 7 0.30
10 14 0.61
11 2 0.09
ACGTcount: A:0.74, C:0.03, G:0.03, T:0.21
Consensus pattern (9 bp):
AAAATAAAT
Found at i:102619799 original size:145 final size:147
Alignment explanation
Indices: 102619500--102619905 Score: 557
Period size: 145 Copynumber: 2.7 Consensus size: 147
102619490 GTAGTAATTA
* *
102619500 AAAAAAATCAAAACTTTGTTTTAAAATTTTAAACTTTCCTCTAAAATGACTTAAAAAAATATATT
1 AAAAAAATCAAAACTTTGTTTTAAAATTTTAAACTTTCCTCTAAAATAAC-TAAAAAAACATATT
*
102619565 TTTATTTTTCAAAATCTAAACTTTCTCCTTTTTTTATTAAAAAAAATACTATTTTTCTTAAAAAT
65 TTTATTTTTCAAAATCTAAACTTTCT-C----TTTA-TAAAAAAAACACTATTTTTCTTAAAAAT
** *
102619630 TAAAGCTTTTATTTTGAAGTAGTTG
124 T-AAGCTTTTACCTTGAAATAGTTG
* *
102619655 AAAAAAATCAAAACTTTATTTTAAAATTTTAAACTTTCCTGTAAAATAACTAAAAAAACATATTT
1 AAAAAAATCAAAACTTTGTTTTAAAATTTTAAACTTTCCTCTAAAATAACTAAAAAAACATATTT
*
102619720 TTATTTTTCAAAATCTAAACTTTCTCTTTA-AAAAAAAACACTATTTTTCTTAAAGATT-AGCTT
66 TTATTTTTCAAAATCTAAACTTTCTCTTTATAAAAAAAACACTATTTTTCTTAAAAATTAAGCTT
102619783 TTACCTTGAAATAGTTG
131 TTACCTTGAAATAGTTG
* * * * *
102619800 AAAAAAATCAAAACTTTGTTTTAAAAATTTAAAATTTCATTTAAAATAACTAAAAAATACAGATT
1 AAAAAAATCAAAACTTTGTTTTAAAATTTTAAACTTTCCTCTAAAATAACTAAAAAA-ACATATT
*
102619865 TTTATTTATT-AAAATCTAAACTTTCTCTTTTGTAAAAAAAA
65 TTTATTT-TTCAAAATCTAAACTTTCTC-TTTATAAAAAAAA
102619906 AATCAAAACT
Statistics
Matches: 231, Mismatches: 16, Indels: 15
0.88 0.06 0.06
Matches are distributed among these distances:
145 71 0.31
146 30 0.13
147 31 0.13
148 8 0.03
149 4 0.02
153 1 0.00
154 39 0.17
155 47 0.20
ACGTcount: A:0.44, C:0.11, G:0.04, T:0.41
Consensus pattern (147 bp):
AAAAAAATCAAAACTTTGTTTTAAAATTTTAAACTTTCCTCTAAAATAACTAAAAAAACATATTT
TTATTTTTCAAAATCTAAACTTTCTCTTTATAAAAAAAACACTATTTTTCTTAAAAATTAAGCTT
TTACCTTGAAATAGTTG
Found at i:102619951 original size:145 final size:142
Alignment explanation
Indices: 102619502--102619951 Score: 446
Period size: 145 Copynumber: 3.0 Consensus size: 142
102619492 AGTAATTAAA
* *
102619502 AAAAATCAAAACTTTGTTTTAAAATTTTAAACTTTCCTCTAAAATGACTTAAAAAAATATATTTT
1 AAAAATCAAAACTTTGTTTTAAAATTTTAAACTTTCCTCTAAAATAAC-TAAAAAAACATATTTT
*
102619567 TATTTTTCAAAATCTAAACTTTCTCCTTTTTTTATTAAAAAAAAT-ACTATTTTTCTTAAAAATT
65 TATTTTTCAAAATCTAAACTTTCT-C--TTTTTA-AAAAAAAAATCACTATTTTTC-TAAAAATT
*
102619631 AAAGCTTTTATTTTGAAGTAGTTGAA
125 --AGCTTTTATTTT-AA--A-TT--T
* *
102619657 AAAAATCAAAACTTTATTTTAAAATTTTAAACTTTCCTGTAAAATAACTAAAAAAACATATTTTT
1 AAAAATCAAAACTTTGTTTTAAAATTTTAAACTTTCCTCTAAAATAACTAAAAAAACATATTTTT
*
102619722 ATTTTTCAAAATCTAAACTTTCTC--TTT-AAAAAAAAA-CACTATTTTTCTTAAAGATTAGCTT
66 ATTTTTCAAAATCTAAACTTTCTCTTTTTAAAAAAAAAATCACTATTTTTC-TAAAAATTAGCTT
* *
102619783 TTACCTTGAAATAGTT
130 TTA-TTTTAAAT--TT
* * * * *
102619799 GAAAAAAATCAAAACTTTGTTTTAAAAATTTAAAATTTCATTTAAAATAACTAAAAAATACAGAT
1 ---AAAAATCAAAACTTTGTTTTAAAATTTTAAACTTTCCTCTAAAATAACTAAAAAA-ACATAT
** * **
102619864 TTTTATTTATT-AAAATCTAAACTTTCTCTTTTGTAAAAAAAAAATCAAAACTTTTCCCAAAATT
62 TTTTATTT-TTCAAAATCTAAACTTTCTCTTTT-TAAAAAAAAAATCACTATTTTTCTAAAAATT
102619928 AGGCCTTTT-TTTTAAATTT
125 A-G-CTTTTATTTTAAATTT
102619947 AAAAA
1 AAAAA
102619952 GAAAGAAAGA
Statistics
Matches: 256, Mismatches: 23, Indels: 42
0.80 0.07 0.13
Matches are distributed among these distances:
142 1 0.00
143 1 0.00
144 1 0.00
145 65 0.25
146 32 0.12
147 28 0.11
148 4 0.02
149 4 0.02
150 21 0.08
151 9 0.04
152 5 0.02
153 1 0.00
154 39 0.15
155 45 0.18
ACGTcount: A:0.44, C:0.11, G:0.04, T:0.41
Consensus pattern (142 bp):
AAAAATCAAAACTTTGTTTTAAAATTTTAAACTTTCCTCTAAAATAACTAAAAAAACATATTTTT
ATTTTTCAAAATCTAAACTTTCTCTTTTTAAAAAAAAAATCACTATTTTTCTAAAAATTAGCTTT
TATTTTAAATTT
Found at i:102622683 original size:73 final size:73
Alignment explanation
Indices: 102622596--102622781 Score: 363
Period size: 73 Copynumber: 2.5 Consensus size: 73
102622586 ACAACTTGAC
102622596 AACTTAGTTGGAATACAACTAAGTTTCATCATTACATCCACTTAAAATAAATCACCACCTACTAC
1 AACTTAGTTGGAATACAACTAAGTTTCATCATTACATCCACTTAAAATAAATCACCACCTACTAC
102622661 CACTAACA
66 CACTAACA
102622669 AACTTAGTTGGAATACAACTAAGTTTCATCATTACATCCACTTAAAATAAATCACCACCTACTAC
1 AACTTAGTTGGAATACAACTAAGTTTCATCATTACATCCACTTAAAATAAATCACCACCTACTAC
102622734 CACTAACA
66 CACTAACA
*
102622742 AACTTAGTTGGAATACAACTAAGTTACATCATTACATCCA
1 AACTTAGTTGGAATACAACTAAGTTTCATCATTACATCCA
102622782 AAATAATAAT
Statistics
Matches: 112, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
73 112 1.00
ACGTcount: A:0.41, C:0.25, G:0.06, T:0.28
Consensus pattern (73 bp):
AACTTAGTTGGAATACAACTAAGTTTCATCATTACATCCACTTAAAATAAATCACCACCTACTAC
CACTAACA
Found at i:102631215 original size:16 final size:16
Alignment explanation
Indices: 102631196--102631228 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
102631186 AAAATGAACT
102631196 AAAACCATAA-TCAAGC
1 AAAACCA-AATTCAAGC
102631212 AAAACCAAATTCAAGC
1 AAAACCAAATTCAAGC
102631228 A
1 A
102631229 TAGGAGTCAA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 2 0.12
16 14 0.88
ACGTcount: A:0.58, C:0.24, G:0.06, T:0.12
Consensus pattern (16 bp):
AAAACCAAATTCAAGC
Found at i:102631961 original size:16 final size:16
Alignment explanation
Indices: 102631942--102631979 Score: 58
Period size: 16 Copynumber: 2.4 Consensus size: 16
102631932 CACCGGCATA
*
102631942 AAGCCTGCTAGGCAAC
1 AAGCCTGATAGGCAAC
*
102631958 AAGCCTGATAGGCAAT
1 AAGCCTGATAGGCAAC
102631974 AAGCCT
1 AAGCCT
102631980 AATATCATAC
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.34, C:0.26, G:0.24, T:0.16
Consensus pattern (16 bp):
AAGCCTGATAGGCAAC
Found at i:102631965 original size:41 final size:41
Alignment explanation
Indices: 102631889--102631966 Score: 111
Period size: 41 Copynumber: 1.9 Consensus size: 41
102631879 CCTAGTATAG
* * * *
102631889 TACACTGGCATAGAGCCTGCTAGGTAATAAACCTGATTCAA
1 TACACCGGCATAAAGCCTGCTAGGCAACAAACCTGATTCAA
*
102631930 TACACCGGCATAAAGCCTGCTAGGCAACAAGCCTGAT
1 TACACCGGCATAAAGCCTGCTAGGCAACAAACCTGAT
102631967 AGGCAATAAG
Statistics
Matches: 32, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
41 32 1.00
ACGTcount: A:0.33, C:0.26, G:0.21, T:0.21
Consensus pattern (41 bp):
TACACCGGCATAAAGCCTGCTAGGCAACAAACCTGATTCAA
Found at i:102631992 original size:57 final size:58
Alignment explanation
Indices: 102631902--102632021 Score: 163
Period size: 57 Copynumber: 2.1 Consensus size: 58
102631892 ACTGGCATAG
* * * *
102631902 AGCCTGCTAGGTAATAAACCTGATTCAATACACCGGCAT-AAAGCCTGCTAGGCAACA
1 AGCCTGATAGGCAATAAACCTAATTCAATACACCAGCATCAAAGCCTGCTAGGCAACA
* *
102631959 AGCCTGATAGGCAATAAGCCTAATATC-ATACACCAGCATCAAAGCCTGCTAGGCAATA
1 AGCCTGATAGGCAATAAACCTAAT-TCAATACACCAGCATCAAAGCCTGCTAGGCAACA
102632017 AGCCT
1 AGCCT
102632022 AATATATCAC
Statistics
Matches: 55, Mismatches: 6, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
57 31 0.56
58 24 0.44
ACGTcount: A:0.36, C:0.27, G:0.18, T:0.19
Consensus pattern (58 bp):
AGCCTGATAGGCAATAAACCTAATTCAATACACCAGCATCAAAGCCTGCTAGGCAACA
Found at i:102645940 original size:44 final size:44
Alignment explanation
Indices: 102645872--102645990 Score: 202
Period size: 44 Copynumber: 2.7 Consensus size: 44
102645862 CATGGCATAG
*
102645872 GATTCTGATATATGTGTGCGAGTAAGACCATGGCATTGATATGT
1 GATTCTGATATATGTGTGCGAGTAAGACCATGGCATCGATATGT
*
102645916 GATTTTGATATATGTGTGCGAGTAAGACCATGGCATCGATATGT
1 GATTCTGATATATGTGTGCGAGTAAGACCATGGCATCGATATGT
* *
102645960 GCTTCTAATATATGTGTGCGAGTAAGACCAT
1 GATTCTGATATATGTGTGCGAGTAAGACCAT
102645991 ATCTGGGACA
Statistics
Matches: 70, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
44 70 1.00
ACGTcount: A:0.28, C:0.13, G:0.26, T:0.34
Consensus pattern (44 bp):
GATTCTGATATATGTGTGCGAGTAAGACCATGGCATCGATATGT
Found at i:102654051 original size:44 final size:44
Alignment explanation
Indices: 102653988--102654104 Score: 198
Period size: 44 Copynumber: 2.7 Consensus size: 44
102653978 CATGACATAG
*
102653988 GATTCCAATATATGTGTGCGAGTAAGACCATGGCATCGATATGT
1 GATTCTAATATATGTGTGCGAGTAAGACCATGGCATCGATATGT
* *
102654032 GATTCTAATATATATGTGCGAGTACGACCATGGCATCGATATGT
1 GATTCTAATATATGTGTGCGAGTAAGACCATGGCATCGATATGT
*
102654076 GCTTCTAATATATGTGTGCGAGTAAGACC
1 GATTCTAATATATGTGTGCGAGTAAGACC
102654105 CTGTCTGGGA
Statistics
Matches: 67, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
44 67 1.00
ACGTcount: A:0.29, C:0.16, G:0.24, T:0.31
Consensus pattern (44 bp):
GATTCTAATATATGTGTGCGAGTAAGACCATGGCATCGATATGT
Found at i:102672924 original size:28 final size:29
Alignment explanation
Indices: 102672846--102672931 Score: 99
Period size: 29 Copynumber: 3.0 Consensus size: 29
102672836 ACATTTCTTG
* *
102672846 GAAT-TGATTCGGG-CTAAATGGGCCATAT
1 GAATATGATTTGGGCCT-AATGGGTCATAT
102672874 GAATATGATTTGGGCCTAATGGGTCATAT
1 GAATATGATTTGGGCCTAATGGGTCATAT
*
102672903 GAATGA-GA-TTGGGCCTAGTGGGTCATAT
1 GAAT-ATGATTTGGGCCTAATGGGTCATAT
102672931 G
1 G
102672932 CATGTATGTA
Statistics
Matches: 52, Mismatches: 3, Indels: 6
0.85 0.05 0.10
Matches are distributed among these distances:
28 24 0.46
29 25 0.48
30 3 0.06
ACGTcount: A:0.27, C:0.12, G:0.31, T:0.30
Consensus pattern (29 bp):
GAATATGATTTGGGCCTAATGGGTCATAT
Found at i:102685708 original size:18 final size:18
Alignment explanation
Indices: 102685689--102685724 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
102685679 CTCTTTGGTA
102685689 TTGTTCTTGAACTCTTTAT
1 TTGTT-TTGAACTCTTTAT
*
102685708 TTGTTTTGAGCTCTTTA
1 TTGTTTTGAACTCTTTA
102685725 AGTAACTGGA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 11 0.69
19 5 0.31
ACGTcount: A:0.14, C:0.14, G:0.14, T:0.58
Consensus pattern (18 bp):
TTGTTTTGAACTCTTTAT
Found at i:102693543 original size:13 final size:14
Alignment explanation
Indices: 102693515--102693544 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
102693505 TTCTCCTTTT
102693515 TTTTCTTTTCTCCC
1 TTTTCTTTTCTCCC
102693529 TTTTCTTTT-TCCC
1 TTTTCTTTTCTCCC
102693542 TTT
1 TTT
102693545 CTTCTCTGTT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 7 0.44
14 9 0.56
ACGTcount: A:0.00, C:0.30, G:0.00, T:0.70
Consensus pattern (14 bp):
TTTTCTTTTCTCCC
Found at i:102693632 original size:13 final size:13
Alignment explanation
Indices: 102693614--102693638 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
102693604 TGTTTTAGTT
102693614 ATATTATTATATA
1 ATATTATTATATA
102693627 ATATTATTATAT
1 ATATTATTATAT
102693639 TATAATAATT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (13 bp):
ATATTATTATATA
Found at i:102695560 original size:15 final size:16
Alignment explanation
Indices: 102695531--102695560 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
102695521 CAAACATGCT
102695531 TTAACACATTATCAAA
1 TTAACACATTATCAAA
102695547 TTAACACA-TATCAA
1 TTAACACATTATCAA
102695561 CAAGGCACCA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 6 0.43
16 8 0.57
ACGTcount: A:0.50, C:0.20, G:0.00, T:0.30
Consensus pattern (16 bp):
TTAACACATTATCAAA
Found at i:102700341 original size:21 final size:21
Alignment explanation
Indices: 102700317--102700364 Score: 69
Period size: 21 Copynumber: 2.3 Consensus size: 21
102700307 TCTTGAATTG
* *
102700317 TTTTATTTATAAGATTGTTAA
1 TTTTATTTATAAAATTATTAA
*
102700338 TTTTATTTATAAAATTATTAT
1 TTTTATTTATAAAATTATTAA
102700359 TTTTAT
1 TTTTAT
102700365 AATTAAATTC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.33, C:0.00, G:0.04, T:0.62
Consensus pattern (21 bp):
TTTTATTTATAAAATTATTAA
Found at i:102700452 original size:20 final size:20
Alignment explanation
Indices: 102700408--102700452 Score: 56
Period size: 20 Copynumber: 2.2 Consensus size: 20
102700398 TTTTTCAAAA
*
102700408 ATATTTTTATAATTTTGTAT
1 ATATTTTTATAAATTTGTAT
*
102700428 CTATTTTTATAAAATTT-TAT
1 ATATTTTTAT-AAATTTGTAT
102700448 ATATT
1 ATATT
102700453 CCTATCAAAA
Statistics
Matches: 21, Mismatches: 3, Indels: 2
0.81 0.12 0.08
Matches are distributed among these distances:
20 16 0.76
21 5 0.24
ACGTcount: A:0.33, C:0.02, G:0.02, T:0.62
Consensus pattern (20 bp):
ATATTTTTATAAATTTGTAT
Found at i:102700506 original size:17 final size:16
Alignment explanation
Indices: 102700484--102700515 Score: 55
Period size: 17 Copynumber: 1.9 Consensus size: 16
102700474 TATATATAAT
102700484 TTTTTAAAGTTTTTTAA
1 TTTTTAAA-TTTTTTAA
102700501 TTTTTAAATTTTTTA
1 TTTTTAAATTTTTTA
102700516 TATTAAAGAT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 7 0.47
17 8 0.53
ACGTcount: A:0.28, C:0.00, G:0.03, T:0.69
Consensus pattern (16 bp):
TTTTTAAATTTTTTAA
Found at i:102700610 original size:35 final size:35
Alignment explanation
Indices: 102700564--102700636 Score: 137
Period size: 35 Copynumber: 2.1 Consensus size: 35
102700554 GTTAAATTTG
102700564 CTGAATTTTTAAAATTAAAACTAAATTGATAAAAT
1 CTGAATTTTTAAAATTAAAACTAAATTGATAAAAT
*
102700599 CTGAATTTTTAAAATTAAAATTAAATTGATAAAAT
1 CTGAATTTTTAAAATTAAAACTAAATTGATAAAAT
102700634 CTG
1 CTG
102700637 TAAATATTAA
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
35 37 1.00
ACGTcount: A:0.49, C:0.05, G:0.07, T:0.38
Consensus pattern (35 bp):
CTGAATTTTTAAAATTAAAACTAAATTGATAAAAT
Found at i:102700631 original size:20 final size:20
Alignment explanation
Indices: 102700573--102700633 Score: 53
Period size: 20 Copynumber: 3.3 Consensus size: 20
102700563 GCTGAATTTT
*
102700573 TAAAATTAAAACTAAATTGA
1 TAAAATTAAAATTAAATTGA
*
102700593 TAAAATCT-GAATT---TT--
1 TAAAAT-TAAAATTAAATTGA
102700608 TAAAATTAAAATTAAATTGA
1 TAAAATTAAAATTAAATTGA
102700628 TAAAAT
1 TAAAAT
102700634 CTGTAAATAT
Statistics
Matches: 31, Mismatches: 3, Indels: 14
0.65 0.06 0.29
Matches are distributed among these distances:
14 1 0.03
15 10 0.32
17 2 0.06
18 2 0.06
20 15 0.48
21 1 0.03
ACGTcount: A:0.56, C:0.03, G:0.05, T:0.36
Consensus pattern (20 bp):
TAAAATTAAAATTAAATTGA
Found at i:102701098 original size:30 final size:30
Alignment explanation
Indices: 102701064--102701126 Score: 101
Period size: 30 Copynumber: 2.1 Consensus size: 30
102701054 ACTTAACAAG
*
102701064 CAAATG-CTTCTAAAATAATAATAAAATTAA
1 CAAATGCCTT-TAAAATAATAAGAAAATTAA
102701094 CAAATGCCTTTAAAATAATAAGAAAATTAA
1 CAAATGCCTTTAAAATAATAAGAAAATTAA
102701124 CAA
1 CAA
102701127 TAAAATAAAT
Statistics
Matches: 31, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
30 28 0.90
31 3 0.10
ACGTcount: A:0.57, C:0.11, G:0.05, T:0.27
Consensus pattern (30 bp):
CAAATGCCTTTAAAATAATAAGAAAATTAA
Found at i:102711065 original size:12 final size:12
Alignment explanation
Indices: 102711050--102711142 Score: 56
Period size: 12 Copynumber: 8.2 Consensus size: 12
102711040 GTTGTTGGTG
102711050 GTGCTGTTTTTT
1 GTGCTGTTTTTT
*
102711062 GTGCTG--TTTG
1 GTGCTGTTTTTT
102711072 GTGCTGTTTTTT
1 GTGCTGTTTTTT
* *
102711084 GTACTG--TTTG
1 GTGCTGTTTTTT
*
102711094 GTGCTGTTTTAAT
1 GTGCTGTTTT-TT
*
102711107 GT--TG-TTTTG
1 GTGCTGTTTTTT
*
102711116 GTGCTATTTTTT
1 GTGCTGTTTTTT
*
102711128 GTGGTGTTTTATT
1 GTGCTGTTTT-TT
102711141 GT
1 GT
102711143 TCTTTCACAG
Statistics
Matches: 59, Mismatches: 13, Indels: 17
0.66 0.15 0.19
Matches are distributed among these distances:
9 2 0.03
10 20 0.34
11 3 0.05
12 28 0.47
13 6 0.10
ACGTcount: A:0.05, C:0.06, G:0.28, T:0.60
Consensus pattern (12 bp):
GTGCTGTTTTTT
Found at i:102711076 original size:22 final size:22
Alignment explanation
Indices: 102711048--102711136 Score: 110
Period size: 22 Copynumber: 4.0 Consensus size: 22
102711038 GTGTTGTTGG
102711048 TGGTGCTGTTTTTTGTGCTGTT
1 TGGTGCTGTTTTTTGTGCTGTT
*
102711070 TGGTGCTGTTTTTTGTACTGTT
1 TGGTGCTGTTTTTTGTGCTGTT
*
102711092 TGGTGCTGTTTTAATGT--TGTTT
1 TGGTGCTGTTTT-TTGTGCTG-TT
* *
102711114 TGGTGCTATTTTTTGTGGTGTT
1 TGGTGCTGTTTTTTGTGCTGTT
102711136 T
1 T
102711137 TATTGTTCTT
Statistics
Matches: 59, Mismatches: 4, Indels: 8
0.83 0.06 0.11
Matches are distributed among these distances:
21 5 0.08
22 49 0.83
23 5 0.08
ACGTcount: A:0.04, C:0.07, G:0.29, T:0.60
Consensus pattern (22 bp):
TGGTGCTGTTTTTTGTGCTGTT
Found at i:102711077 original size:10 final size:10
Alignment explanation
Indices: 102711023--102711102 Score: 52
Period size: 10 Copynumber: 7.3 Consensus size: 10
102711013 TTTGCAGGTT
*
102711023 TTTGGTGCTAT
1 TTTGGTGCT-G
*
102711034 TTTGGTGTTG
1 TTTGGTGCTG
102711044 TTGGTGGTGCTG
1 TT--TGGTGCTG
*
102711056 TTTTTTGTGCTG
1 --TTTGGTGCTG
102711068 TTTGGTGCTG
1 TTTGGTGCTG
* *
102711078 TTTTTTGTACTG
1 --TTTGGTGCTG
102711090 TTTGGTGCTG
1 TTTGGTGCTG
102711100 TTT
1 TTT
102711103 TAATGTTGTT
Statistics
Matches: 54, Mismatches: 9, Indels: 13
0.71 0.12 0.17
Matches are distributed among these distances:
10 22 0.41
11 8 0.15
12 22 0.41
14 2 0.04
ACGTcount: A:0.03, C:0.07, G:0.33, T:0.57
Consensus pattern (10 bp):
TTTGGTGCTG
Found at i:102711136 original size:44 final size:43
Alignment explanation
Indices: 102711022--102711136 Score: 117
Period size: 44 Copynumber: 2.6 Consensus size: 43
102711012 TTTTGCAGGT
* * *
102711022 TTTTGGTGCTA-TTTTGGTGTTGTTGGTGGTGCTGTTTTTTGTGC
1 TTTTGGTGCTATTTTTTGTGCTGTT--TGGTGCTGTTTTATGTGC
* *
102711066 TGTTTGGTGCTGTTTTTTGTACTGTTTGGTGCTGTTTTAATGTTG-
1 T-TTTGGTGCTATTTTTTGTGCTGTTTGGTGCTGTTTT-ATG-TGC
*
102711111 TTTTGGTGCTATTTTTTGTGGTGTTT
1 TTTTGGTGCTATTTTTTGTGCTGTTT
102711137 TATTGTTCTT
Statistics
Matches: 59, Mismatches: 8, Indels: 8
0.79 0.11 0.11
Matches are distributed among these distances:
44 35 0.59
45 12 0.20
46 12 0.20
ACGTcount: A:0.04, C:0.06, G:0.30, T:0.59
Consensus pattern (43 bp):
TTTTGGTGCTATTTTTTGTGCTGTTTGGTGCTGTTTTATGTGC
Found at i:102711515 original size:23 final size:25
Alignment explanation
Indices: 102711489--102711536 Score: 64
Period size: 23 Copynumber: 2.0 Consensus size: 25
102711479 CTTAACTTAT
*
102711489 TTTATTAAAT-AAA-AAATTTAAAA
1 TTTAATAAATCAAATAAATTTAAAA
*
102711512 TTTAATAAATCAAATACATTTAAAA
1 TTTAATAAATCAAATAAATTTAAAA
102711537 ACATAAAAGA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
23 9 0.43
24 3 0.14
25 9 0.43
ACGTcount: A:0.58, C:0.04, G:0.00, T:0.38
Consensus pattern (25 bp):
TTTAATAAATCAAATAAATTTAAAA
Found at i:102711825 original size:25 final size:24
Alignment explanation
Indices: 102711797--102711844 Score: 69
Period size: 24 Copynumber: 2.0 Consensus size: 24
102711787 ACAGCATCAA
102711797 AACAGCACCAAACAACACAAAAAAT
1 AACAGCACC-AACAACACAAAAAAT
* *
102711822 AACATCACCAACAACACCAAAAA
1 AACAGCACCAACAACACAAAAAA
102711845 CTTGCAAAAT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
24 13 0.62
25 8 0.38
ACGTcount: A:0.62, C:0.31, G:0.02, T:0.04
Consensus pattern (24 bp):
AACAGCACCAACAACACAAAAAAT
Found at i:102713743 original size:11 final size:11
Alignment explanation
Indices: 102713727--102713753 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
102713717 TCAAAAGTAG
102713727 TTAATTTAAAT
1 TTAATTTAAAT
102713738 TTAATTTAAAT
1 TTAATTTAAAT
102713749 TTAAT
1 TTAAT
102713754 ATGCAAAATT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (11 bp):
TTAATTTAAAT
Found at i:102715169 original size:16 final size:18
Alignment explanation
Indices: 102715150--102715183 Score: 54
Period size: 16 Copynumber: 2.0 Consensus size: 18
102715140 GCCCGCAAAA
102715150 ATTTGAGT-TT-AATTTT
1 ATTTGAGTGTTCAATTTT
102715166 ATTTGAGTGTTCAATTTT
1 ATTTGAGTGTTCAATTTT
102715184 TGTCGATCCG
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 8 0.50
17 2 0.12
18 6 0.38
ACGTcount: A:0.24, C:0.03, G:0.15, T:0.59
Consensus pattern (18 bp):
ATTTGAGTGTTCAATTTT
Found at i:102719947 original size:80 final size:80
Alignment explanation
Indices: 102719805--102719962 Score: 273
Period size: 80 Copynumber: 2.0 Consensus size: 80
102719795 CTCCATATGG
* *
102719805 AGAAAAGAGAGCACGTTGATGTATTGAGTGTGAGACTTTGAAATTTCTATTGGAAAATGATCTAA
1 AGAAAAGAGAGCACGTTGATGTATTGAGTGCGAAACTTTGAAATTTCTATTGGAAAATGATCTAA
102719870 CAGTCCATTTTCAGC
66 CAGTCCATTTTCAGC
102719885 AGAAAAGAGAGCACGTTGATGTATTGAGTGCGAAACTTTGAAATTTCTATTGGGAAAA-GATCTA
1 AGAAAAGAGAGCACGTTGATGTATTGAGTGCGAAACTTTGAAATTTCTATT-GGAAAATGATCTA
*
102719949 ACATTCCATTTTCA
65 ACAGTCCATTTTCA
102719963 ATTACATCAG
Statistics
Matches: 74, Mismatches: 3, Indels: 2
0.94 0.04 0.03
Matches are distributed among these distances:
80 68 0.92
81 6 0.08
ACGTcount: A:0.35, C:0.13, G:0.22, T:0.31
Consensus pattern (80 bp):
AGAAAAGAGAGCACGTTGATGTATTGAGTGCGAAACTTTGAAATTTCTATTGGAAAATGATCTAA
CAGTCCATTTTCAGC
Found at i:102752658 original size:20 final size:21
Alignment explanation
Indices: 102752620--102752661 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
102752610 ATACATGAAA
*
102752620 TTAAAAAAAATAACTCTTAAT
1 TTAAAAAAAATAACACTTAAT
*
102752641 TTAAAGAAAATAA-ACTTAAT
1 TTAAAAAAAATAACACTTAAT
102752661 T
1 T
102752662 ATCTAAAAGA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
20 7 0.37
21 12 0.63
ACGTcount: A:0.57, C:0.07, G:0.02, T:0.33
Consensus pattern (21 bp):
TTAAAAAAAATAACACTTAAT
Found at i:102753255 original size:17 final size:18
Alignment explanation
Indices: 102753229--102753268 Score: 64
Period size: 17 Copynumber: 2.3 Consensus size: 18
102753219 TACTCAACCA
*
102753229 ATTATTTATTTTAA-TTT
1 ATTATATATTTTAATTTT
102753246 ATTATATATTTTAATTTT
1 ATTATATATTTTAATTTT
102753264 ATTAT
1 ATTAT
102753269 GTACATTTTA
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
17 13 0.62
18 8 0.38
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.68
Consensus pattern (18 bp):
ATTATATATTTTAATTTT
Found at i:102762718 original size:22 final size:24
Alignment explanation
Indices: 102762670--102762727 Score: 86
Period size: 22 Copynumber: 2.5 Consensus size: 24
102762660 ATAAAAATTA
*
102762670 TTTAAA-AAATTAAGGTTAATGGT
1 TTTAAATAAATTAAGGTTAAGGGT
102762693 TTTAAATAAATTAA-GTT-AGGGT
1 TTTAAATAAATTAAGGTTAAGGGT
102762715 TTTAAATAAATTA
1 TTTAAATAAATTA
102762728 GGGATTGGGG
Statistics
Matches: 33, Mismatches: 1, Indels: 3
0.89 0.03 0.08
Matches are distributed among these distances:
22 17 0.52
23 9 0.27
24 7 0.21
ACGTcount: A:0.45, C:0.00, G:0.14, T:0.41
Consensus pattern (24 bp):
TTTAAATAAATTAAGGTTAAGGGT
Found at i:102762808 original size:56 final size:54
Alignment explanation
Indices: 102762745--102763237 Score: 206
Period size: 52 Copynumber: 9.1 Consensus size: 54
102762735 GGGTTTATGA
*
102762745 TTTTAAATAGATTAAGTAAATTAGGGTTCTAGGATTGTAAATAAATTAAGTTAGTG
1 TTTTAAATAGATTAAGTAAATTAGGGTT-TAGGGTT-TAAATAAATTAAGTTAGTG
* * * *
102762801 TTTTAAATA-ACT---TAAATTAGGGTTTAGGGTTT-ATTAAATTAGGATTTATGTT
1 TTTTAAATAGATTAAGTAAATTAGGGTTTAGGGTTTAAATAAATTA--AGTTA-GTG
*
102762853 TTTTAAATAGATTGAGTAAATTAGGGCTTTAGGGTTTTAAATAAATTAAGTTAG-G
1 TTTTAAATAGATTAAGTAAATTAGGG-TTTAGGG-TTTAAATAAATTAAGTTAGTG
* * * * * * * * *
102762908 TTTT-AA-A-ATAAATTAAATTAGCGTTTTGGATTT-ATTAAATTAGGGTTTATATT
1 TTTTAAATAGATTAAGTAAATTAGGGTTTAGGGTTTAAATAAATTA-AG-TTA-GTG
*** * * * *
102762961 TTTTGGTTAAAACTAATTAAATTAGGGTTCTAGGATTTTAAATAAATTAAGTTAG-G
1 TTTTAAAT-AGATTAAGTAAATTAGGGTT-TAGG-GTTTAAATAAATTAAGTTAGTG
* * * * * * * *
102763017 GTTT-AA-A-ATAAATTAAATTAGGGTTTTGGGTTT-ATTAAATTAGGGCTTATATT
1 TTTTAAATAGATTAAGTAAATTAGGGTTTAGGGTTTAAATAAATTA-AG-TTA-GTG
* * *
102763070 TTTGGTTAA-A-ATTAATTAAATTAGGTTTCTAGGGTTTTAAATAAATTAAGTTAG-G
1 TTT--TAAATAGATTAAGTAAATTAGGGTT-TAGGG-TTTAAATAAATTAAGTTAGTG
* * * * *
102763125 GTTTAAACT--A--AATTAAATTAGGGTTTTGGGTTT--ATCAAATTAGGGCTTATGTTT
1 TTTTAAA-TAGATTAAGTAAATTAGGGTTTAGGGTTTAAAT-AAATTA-AG-TTA-G-TG
* *
102763179 TTTTAAATAGATTAAGTAAATTAGGGTTCTAGGGTTTTAAATAAATTAAATTAGAG
1 TTTTAAATAGATTAAGTAAATTAGGGTT-TAGGG-TTTAAATAAATTAAGTTAGTG
102763235 TTT
1 TTT
102763238 AGGGTTTAAG
Statistics
Matches: 328, Mismatches: 62, Indels: 94
0.68 0.13 0.19
Matches are distributed among these distances:
48 2 0.01
49 30 0.09
50 13 0.04
51 31 0.09
52 66 0.20
53 14 0.04
54 9 0.03
55 10 0.03
56 46 0.14
57 48 0.15
58 20 0.06
59 23 0.07
60 14 0.04
61 2 0.01
ACGTcount: A:0.36, C:0.02, G:0.18, T:0.44
Consensus pattern (54 bp):
TTTTAAATAGATTAAGTAAATTAGGGTTTAGGGTTTAAATAAATTAAGTTAGTG
Found at i:102762810 original size:22 final size:22
Alignment explanation
Indices: 102762782--102762825 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
102762772 TCTAGGATTG
* *
102762782 TAAATAAATTAAGTTAGTGTTT
1 TAAATAAATTAAATTAGGGTTT
*
102762804 TAAATAACTTAAATTAGGGTTT
1 TAAATAAATTAAATTAGGGTTT
102762826 AGGGTTTATT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.41, C:0.02, G:0.14, T:0.43
Consensus pattern (22 bp):
TAAATAAATTAAATTAGGGTTT
Found at i:102762909 original size:21 final size:22
Alignment explanation
Indices: 102762885--102762934 Score: 75
Period size: 22 Copynumber: 2.3 Consensus size: 22
102762875 AGGGCTTTAG
*
102762885 GGTTTT-AAATAAATTAAGTTA
1 GGTTTTAAAATAAATTAAATTA
102762906 GGTTTTAAAATAAATTAAATTA
1 GGTTTTAAAATAAATTAAATTA
102762928 GCGTTTT
1 G-GTTTT
102762935 GGATTTATTA
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
21 6 0.23
22 15 0.58
23 5 0.19
ACGTcount: A:0.40, C:0.02, G:0.14, T:0.44
Consensus pattern (22 bp):
GGTTTTAAAATAAATTAAATTA
Found at i:102762984 original size:217 final size:216
Alignment explanation
Indices: 102762745--102763238 Score: 672
Period size: 217 Copynumber: 2.3 Consensus size: 216
102762735 GGGTTTATGA
* * * *
102762745 TTTTAAATAGATTAAGTAAATTAGGGTTCTAGGATTGTAAATAAATTAAGTTAGTGTTTTAAATA
1 TTTTAAATAGACTAAGTAAATTAGGGTTCTAGGATTTTAAATAAATTAAGTTAGAGTTTAAAATA
* * * *
102762810 ACTTAAATTAGGGTTTAGGGTTTATTAAATTAGGATTTATGTTTTT-TAAATAGATTGAGTAAAT
66 AATTAAATTAGGGTTTAGGGTTTATTAAATTAGGACTTATATTTTTGTAAA-A-ATTAAGTAAAT
*
102762874 TAGGGCTT-TAGGGTTTTAAATAAATTAAGTTAGGTTTTAAAATAAATTAAATTAGCGTTTTGGA
129 TA-GGCTTCTAGGGTTTTAAATAAATTAAGTTAGGGTTTAAAATAAATTAAATTAGCGTTTTGGA
* *
102762938 TTTATTAAATTAGGGTTTATATTT
193 TTTATCAAATTAGGGCTTATATTT
* * *
102762962 TTTGGTTAA-A-ACTAATTAAATTAGGGTTCTAGGATTTTAAATAAATTAAGTTAGGGTTTAAAA
1 TTT--TAAATAGACTAAGTAAATTAGGGTTCTAGGATTTTAAATAAATTAAGTTAGAGTTTAAAA
* * * *
102763025 TAAATTAAATTAGGGTTTTGGGTTTATTAAATTAGGGCTTATATTTTTGGTTAAAATTAATTAAA
64 TAAATTAAATTAGGGTTTAGGGTTTATTAAATTAGGACTTATATTTTT-GTAAAAATTAAGTAAA
* * * *
102763090 TTAGGTTTCTAGGGTTTTAAATAAATTAAGTTAGGGTTTAAACTAAATTAAATTAGGGTTTTGGG
128 TTAGGCTTCTAGGGTTTTAAATAAATTAAGTTAGGGTTTAAAATAAATTAAATTAGCGTTTTGGA
*
102763155 TTTATCAAATTAGGGCTTATGTTT
193 TTTATCAAATTAGGGCTTATATTT
* * *
102763179 TTTTAAATAGATTAAGTAAATTAGGGTTCTAGGGTTTTAAATAAATTAAATTAGAGTTTA
1 TTTTAAATAGACTAAGTAAATTAGGGTTCTAGGATTTTAAATAAATTAAGTTAGAGTTTA
102763239 GGGTTTAAGG
Statistics
Matches: 242, Mismatches: 28, Indels: 14
0.85 0.10 0.05
Matches are distributed among these distances:
215 3 0.01
216 5 0.02
217 226 0.93
218 2 0.01
219 6 0.02
ACGTcount: A:0.36, C:0.02, G:0.18, T:0.44
Consensus pattern (216 bp):
TTTTAAATAGACTAAGTAAATTAGGGTTCTAGGATTTTAAATAAATTAAGTTAGAGTTTAAAATA
AATTAAATTAGGGTTTAGGGTTTATTAAATTAGGACTTATATTTTTGTAAAAATTAAGTAAATTA
GGCTTCTAGGGTTTTAAATAAATTAAGTTAGGGTTTAAAATAAATTAAATTAGCGTTTTGGATTT
ATCAAATTAGGGCTTATATTT
Found at i:102763022 original size:109 final size:109
Alignment explanation
Indices: 102762755--102763238 Score: 645
Period size: 108 Copynumber: 4.5 Consensus size: 109
102762745 TTTTAAATAG
* * * * *
102762755 ATTAAGTAAATTAGGGTTCTAGGATTGTAAATAAATTAAGTTAGTGTTTTAAATAACTTAAATTA
1 ATTAAGTAAATTAGGGTTCTAGGGTTTTAAATAAATTAAGTTAGGGTTTAAAATAAATTAAATTA
* ** * *** *
102762820 GGGTTTAGGGTTTATTAAATTAGGATTTATGTTTTTTAAAT-AG
66 GGGTTTTGGGTTTATTAAATTAGGGCTTATATTTTTTGGTTAAA
* *
102762863 ATTGAGTAAATTAGGGCTT-TAGGGTTTTAAATAAATTAAGTTAGGTTTTAAAATAAATTAAATT
1 ATTAAGTAAATTAGGG-TTCTAGGGTTTTAAATAAATTAAGTTAGGGTTTAAAATAAATTAAATT
* * *
102762927 AGCGTTTTGGATTTATTAAATTAGGGTTTATATTTTTTGGTTAAA
65 AGGGTTTTGGGTTTATTAAATTAGGGCTTATATTTTTTGGTTAAA
* * *
102762972 ACTAATTAAATTAGGGTTCTAGGATTTTAAATAAATTAAGTTAGGGTTTAAAATAAATTAAATTA
1 ATTAAGTAAATTAGGGTTCTAGGGTTTTAAATAAATTAAGTTAGGGTTTAAAATAAATTAAATTA
102763037 GGGTTTTGGGTTTATTAAATTAGGGCTTATA-TTTTTGGTTAAA
66 GGGTTTTGGGTTTATTAAATTAGGGCTTATATTTTTTGGTTAAA
* * *
102763080 ATTAATTAAATTAGGTTTCTAGGGTTTTAAATAAATTAAGTTAGGGTTTAAACTAAATTAAATTA
1 ATTAAGTAAATTAGGGTTCTAGGGTTTTAAATAAATTAAGTTAGGGTTTAAAATAAATTAAATTA
* * *
102763145 GGGTTTTGGGTTTATCAAATTAGGGCTTATGTTTTTT--TAAATA
66 GGGTTTTGGGTTTATTAAATTAGGGCTTATATTTTTTGGTTAA-A
* *
102763188 GATTAAGTAAATTAGGGTTCTAGGGTTTTAAATAAATTAAATTAGAGTTTA
1 -ATTAAGTAAATTAGGGTTCTAGGGTTTTAAATAAATTAAGTTAGGGTTTA
102763239 GGGTTTAAGG
Statistics
Matches: 335, Mismatches: 35, Indels: 11
0.88 0.09 0.03
Matches are distributed among these distances:
107 3 0.01
108 193 0.58
109 139 0.41
ACGTcount: A:0.36, C:0.02, G:0.18, T:0.43
Consensus pattern (109 bp):
ATTAAGTAAATTAGGGTTCTAGGGTTTTAAATAAATTAAGTTAGGGTTTAAAATAAATTAAATTA
GGGTTTTGGGTTTATTAAATTAGGGCTTATATTTTTTGGTTAAA
Found at i:102763025 original size:22 final size:22
Alignment explanation
Indices: 102762991--102763042 Score: 77
Period size: 22 Copynumber: 2.4 Consensus size: 22
102762981 ATTAGGGTTC
* * *
102762991 TAGGATTTTAAATAAATTAAGT
1 TAGGGTTTAAAATAAATTAAAT
102763013 TAGGGTTTAAAATAAATTAAAT
1 TAGGGTTTAAAATAAATTAAAT
102763035 TAGGGTTT
1 TAGGGTTT
102763043 TGGGTTTATT
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 27 1.00
ACGTcount: A:0.42, C:0.00, G:0.17, T:0.40
Consensus pattern (22 bp):
TAGGGTTTAAAATAAATTAAAT
Found at i:102763127 original size:22 final size:23
Alignment explanation
Indices: 102763099--102763151 Score: 83
Period size: 22 Copynumber: 2.4 Consensus size: 23
102763089 ATTAGGTTTC
*
102763099 TAGGGTTTTAAA-TAAATTAAGT
1 TAGGGTTTTAAACTAAATTAAAT
102763121 TAGGG-TTTAAACTAAATTAAAT
1 TAGGGTTTTAAACTAAATTAAAT
102763143 TAGGGTTTT
1 TAGGGTTTT
102763152 GGGTTTATCA
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
21 6 0.21
22 19 0.68
23 3 0.11
ACGTcount: A:0.38, C:0.02, G:0.19, T:0.42
Consensus pattern (23 bp):
TAGGGTTTTAAACTAAATTAAAT
Found at i:102763264 original size:35 final size:37
Alignment explanation
Indices: 102763199--102763274 Score: 102
Period size: 35 Copynumber: 2.1 Consensus size: 37
102763189 ATTAAGTAAA
* *
102763199 TTAGGGTTCTAGGGTTTTAAATAAATTAAATTAGAGT
1 TTAGGGTTCTAAGGTTTAAAATAAATTAAATTAGAGT
* *
102763236 TTAGGGTT-TAAGG-TTAAAATTAATTAAATTAGGGT
1 TTAGGGTTCTAAGGTTTAAAATAAATTAAATTAGAGT
102763271 TTAG
1 TTAG
102763275 TTTTTTTAAA
Statistics
Matches: 35, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
35 23 0.66
36 4 0.11
37 8 0.23
ACGTcount: A:0.36, C:0.01, G:0.22, T:0.41
Consensus pattern (37 bp):
TTAGGGTTCTAAGGTTTAAAATAAATTAAATTAGAGT
Found at i:102763476 original size:126 final size:127
Alignment explanation
Indices: 102763331--102763651 Score: 417
Period size: 119 Copynumber: 2.6 Consensus size: 127
102763321 TTTTACCTTA
* * *
102763331 AAAAAATAATTTTGAGAAGACGTTTCTAAATAAATAGTGTTAAAAACGCTTCAAGCAGGATGCAT
1 AAAAAATAATTTTGAGAAGACGTTTCTAAACAAATAGTGTCAAAAACGCTTCAAGCAGGATGCAA
* * * *
102763396 TGTCGGCAAAAATAT-AGAAAAAAGCTCCCACATGGACGCTCTTTTGCTATAGTAGTTCCTG
66 TGTCAGCAAAAATATCAGAAAAAAGCTCCCACATAGACGCTCTTTTGCTACAGCAGTTCCTG
* *
102763457 AAAAAATAAATTTGAGAAGACGTTTCTGAACAAATAGTGTCAAAAACG--T-----AGGATGCAA
1 AAAAAATAATTTTGAGAAGACGTTTCTAAACAAATAGTGTCAAAAACGCTTCAAGCAGGATGCAA
* * * * * *
102763515 TGCCAGC-AAAATTTCTGAAAAAAGCTCCCACGTAGACGCTCTTTTTCTACAGCAGTTCTTG
66 TGTCAGCAAAAATATCAGAAAAAAGCTCCCACATAGACGCTCTTTTGCTACAGCAGTTCCTG
* * *
102763576 AAAAAATAATTTTGAGAAGACGTTTCCAAACAAATAGTGTCAAAAACGCTTCAAGCAAGTTGCAA
1 AAAAAATAATTTTGAGAAGACGTTTCTAAACAAATAGTGTCAAAAACGCTTCAAGCAGGATGCAA
102763641 TGTCAGCAAAA
66 TGTCAGCAAAA
102763652 TTTCTGAAAA
Statistics
Matches: 165, Mismatches: 21, Indels: 17
0.81 0.10 0.08
Matches are distributed among these distances:
118 6 0.04
119 97 0.59
121 1 0.01
124 1 0.01
126 57 0.35
127 3 0.02
ACGTcount: A:0.40, C:0.17, G:0.17, T:0.26
Consensus pattern (127 bp):
AAAAAATAATTTTGAGAAGACGTTTCTAAACAAATAGTGTCAAAAACGCTTCAAGCAGGATGCAA
TGTCAGCAAAAATATCAGAAAAAAGCTCCCACATAGACGCTCTTTTGCTACAGCAGTTCCTG
Found at i:102764562 original size:3 final size:3
Alignment explanation
Indices: 102764554--102764579 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
102764544 GGGTTCAGAT
102764554 GAA GAA GAA GAA GAA GAA GAA GAA GA
1 GAA GAA GAA GAA GAA GAA GAA GAA GA
102764580 TTCGCGATTC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.65, C:0.00, G:0.35, T:0.00
Consensus pattern (3 bp):
GAA
Found at i:102767169 original size:18 final size:18
Alignment explanation
Indices: 102767146--102767181 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
102767136 AAAAAGGAAA
*
102767146 ATATAAGGGTTAGGATAC
1 ATATAAGGGCTAGGATAC
102767164 ATATAAGGGCTAGGATAC
1 ATATAAGGGCTAGGATAC
102767182 GCACCTGGCA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.39, C:0.08, G:0.28, T:0.25
Consensus pattern (18 bp):
ATATAAGGGCTAGGATAC
Found at i:102768760 original size:54 final size:55
Alignment explanation
Indices: 102768643--102768762 Score: 188
Period size: 54 Copynumber: 2.2 Consensus size: 55
102768633 AAAAAAATAT
* *
102768643 AAAATAAAAATTAATTAAAATTACATAAATGAAAAAAAATATTAAATAATATTCA
1 AAAATTAAAATTAATTAAAATTACATAAATGAAAAAAAATATTAAAAAATATTCA
*
102768698 AAAATTAAAATTAATTAAAATTACATAAATG-GAAAAAATATTAAAAAATATTCA
1 AAAATTAAAATTAATTAAAATTACATAAATGAAAAAAAATATTAAAAAATATTCA
**
102768752 AAGCTTAAAAT
1 AAAATTAAAAT
102768763 AAATCGTTAC
Statistics
Matches: 60, Mismatches: 5, Indels: 1
0.91 0.08 0.02
Matches are distributed among these distances:
54 30 0.50
55 30 0.50
ACGTcount: A:0.63, C:0.04, G:0.03, T:0.29
Consensus pattern (55 bp):
AAAATTAAAATTAATTAAAATTACATAAATGAAAAAAAATATTAAAAAATATTCA
Found at i:102777144 original size:17 final size:17
Alignment explanation
Indices: 102777117--102777149 Score: 50
Period size: 16 Copynumber: 1.9 Consensus size: 17
102777107 ACTTTTTAGA
102777117 TTTTTTACATT-ATTTC
1 TTTTTTACATTGATTTC
102777133 TTTTTTACCATTGATTT
1 TTTTTTA-CATTGATTT
102777150 GAAAATTTAT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 7 0.47
17 4 0.27
18 4 0.27
ACGTcount: A:0.18, C:0.12, G:0.03, T:0.67
Consensus pattern (17 bp):
TTTTTTACATTGATTTC
Found at i:102790693 original size:18 final size:19
Alignment explanation
Indices: 102790666--102790708 Score: 52
Period size: 18 Copynumber: 2.3 Consensus size: 19
102790656 GTACTCTTGA
* *
102790666 ATAAACAACCAATT-TCAG
1 ATAAATAACCAATTAACAG
*
102790684 ATAAATAACCACTTAACAG
1 ATAAATAACCAATTAACAG
102790703 ATAAAT
1 ATAAAT
102790709 CAATTTAATA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
18 12 0.57
19 9 0.43
ACGTcount: A:0.53, C:0.19, G:0.05, T:0.23
Consensus pattern (19 bp):
ATAAATAACCAATTAACAG
Found at i:102800354 original size:48 final size:48
Alignment explanation
Indices: 102800244--102800377 Score: 160
Period size: 48 Copynumber: 2.8 Consensus size: 48
102800234 TATGTACGAA
**
102800244 CCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATTTATGAT
1 CCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATAGATGAT
* * * *
102800292 CCCACGTAGGACCATGTCTGGGACATGGTATTGGCATCGATAGGTGAT
1 CCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATAGATGAT
* * * * * *
102800340 TCCATGTAAAACCATATTTGGGATATGACATTGGCATC
1 CCCATGTAAGACCATGTCTGGGACATGGCATTGGCATC
102800378 CTACTATGTG
Statistics
Matches: 71, Mismatches: 15, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
48 71 1.00
ACGTcount: A:0.26, C:0.20, G:0.25, T:0.28
Consensus pattern (48 bp):
CCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATAGATGAT
Found at i:102807143 original size:48 final size:48
Alignment explanation
Indices: 102807087--102807236 Score: 183
Period size: 48 Copynumber: 3.1 Consensus size: 48
102807077 CTAGGCTTTC
* *
102807087 GACATCGATATGTAATCCCTTGTAAGACCATGTTTGGGACATGGCATT
1 GACATCGATATGTGATCCCATGTAAGACCATGTTTGGGACATGGCATT
* ** * * *
102807135 GACATCGATCTACGATCCCATGTAAGACCATGTCTGGCACATGGAATT
1 GACATCGATATGTGATCCCATGTAAGACCATGTTTGGGACATGGCATT
* * * *
102807183 GACATCAATAGGTGATCCCATGTAAGACCATATTTGGGATATGGCATT
1 GACATCGATATGTGATCCCATGTAAGACCATGTTTGGGACATGGCATT
*
102807231 GGCATC
1 GACATC
102807237 CTACCATGTG
Statistics
Matches: 83, Mismatches: 19, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
48 83 1.00
ACGTcount: A:0.29, C:0.21, G:0.23, T:0.28
Consensus pattern (48 bp):
GACATCGATATGTGATCCCATGTAAGACCATGTTTGGGACATGGCATT
Found at i:102808803 original size:37 final size:37
Alignment explanation
Indices: 102808742--102808850 Score: 182
Period size: 37 Copynumber: 2.9 Consensus size: 37
102808732 AGCTCAGATG
* * *
102808742 AAATCTCCACACGAAGTTACCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
102808779 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
102808816 TAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
102808851 ATATATTTCC
Statistics
Matches: 68, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 68 1.00
ACGTcount: A:0.27, C:0.32, G:0.19, T:0.22
Consensus pattern (37 bp):
AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
Found at i:102809052 original size:48 final size:49
Alignment explanation
Indices: 102808997--102809438 Score: 658
Period size: 48 Copynumber: 8.9 Consensus size: 49
102808987 ACACATCGCC
*
102808997 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTC-A
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCAA
102809045 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTC--A-A
* * * *
102809097 TATATATTTCACATTAACCATTCAGCTTTACCACATATACACATCTCATATA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTC--A-A
* *
102809149 TATATATTTCGCATTAGCCATTCGGCTTTACCACATATACATATCTC-A
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCAA
102809197 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA-A
* * *
102809247 TATATATTTCACATTAACCATTCAGCTTTACCACATATACATATCTCATA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA-A
* * * *
102809297 TATATATTTCATATTAACCATTCGGCTTTACCACATACACATATCTC-A
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCAA
102809345 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTC-A
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCAA
102809393 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCT
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCT
102809439 TATGCATCAA
Statistics
Matches: 367, Mismatches: 21, Indels: 12
0.92 0.05 0.03
Matches are distributed among these distances:
48 183 0.50
50 92 0.25
52 92 0.25
ACGTcount: A:0.33, C:0.26, G:0.05, T:0.36
Consensus pattern (49 bp):
TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCAA
Found at i:102809452 original size:98 final size:98
Alignment explanation
Indices: 102808997--102809453 Score: 661
Period size: 100 Copynumber: 4.6 Consensus size: 98
102808987 ACACATCGCC
*
102808997 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACAT-ATTTCACATTA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATAATTTCACATTA
102809061 GCCATTCGGCTTTACCACATATACATATCTCATATA
66 GCCATTCGGCTTTACCACATATACATATCTC--A-A
* * * * * *
102809097 TATATATTTCACATTAACCATTCAGCTTTACCACATATACACATCTCATATATATATATTTCGCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTC--ATACATA-ATTTCACA
102809162 TTAGCCATTCGGCTTTACCACATATACATATCTC-A
63 TTAGCCATTCGGCTTTACCACATATACATATCTCAA
*
102809197 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATATATTTCACATT
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATA-ATTTCACATT
* *
102809262 AACCATTCAGCTTTACCACATATACATATCTCATA
65 AGCCATTCGGCTTTACCACATATACATATCTCA-A
* * * *
102809297 TATATATTTCATATTAACCATTCGGCTTTACCACATACACATATCTCATACAT-ATTTCACATTA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATAATTTCACATTA
102809361 GCCATTCGGCTTTACCACATATACATATCTC-A
66 GCCATTCGGCTTTACCACATATACATATCTCAA
* *
102809393 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTTATGCATCAATTTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACAT-AATTTCA
102809454 GCAATAGCTT
Statistics
Matches: 322, Mismatches: 27, Indels: 18
0.88 0.07 0.05
Matches are distributed among these distances:
96 48 0.15
98 93 0.29
100 135 0.42
102 5 0.02
104 41 0.13
ACGTcount: A:0.33, C:0.26, G:0.05, T:0.37
Consensus pattern (98 bp):
TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATAATTTCACATTA
GCCATTCGGCTTTACCACATATACATATCTCAA
Found at i:102823315 original size:52 final size:51
Alignment explanation
Indices: 102823237--102823340 Score: 199
Period size: 52 Copynumber: 2.0 Consensus size: 51
102823227 AACTTAAATA
102823237 ACAACATCAATTCAACTTATCATTCCCTTTTTCATCATTTTACACTTCAAGT
1 ACAACATCAATTCAACTTATCATTCCC-TTTTCATCATTTTACACTTCAAGT
102823289 ACAACATCAATTCAACTTATCATTCCCTTTTCATCATTTTACACTTCAAGT
1 ACAACATCAATTCAACTTATCATTCCCTTTTCATCATTTTACACTTCAAGT
102823340 A
1 A
102823341 TGAACTTACT
Statistics
Matches: 52, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
51 25 0.48
52 27 0.52
ACGTcount: A:0.32, C:0.27, G:0.02, T:0.39
Consensus pattern (51 bp):
ACAACATCAATTCAACTTATCATTCCCTTTTCATCATTTTACACTTCAAGT
Found at i:102830726 original size:27 final size:26
Alignment explanation
Indices: 102830687--102830826 Score: 106
Period size: 27 Copynumber: 5.2 Consensus size: 26
102830677 GGAAGCGTCC
*
102830687 TGGTGGCTATGCCATAATTATCTGATT
1 TGGTGGCTCTGCCA-AATTATCTGATT
* *
102830714 TGGTGGCTCTGCCACATATATCT-ATCC
1 TGGTGGCTCTGCCAAAT-TATCTGAT-T
* *
102830741 TAGTGGCTATGCCACAATTATCTGATT
1 TGGTGGCTCTGCCA-AATTATCTGATT
* * *
102830768 TGGTGGCTCAGCCACATATATATG-TT
1 TGGTGGCTCTGCCAAAT-TATCTGATT
*
102830794 CTGGTGGCTCTGCCACAA-TATCTGTATC
1 -TGGTGGCTCTGCCA-AATTATCTG-ATT
102830822 TGGTG
1 TGGTG
102830827 ACTTCGTCAC
Statistics
Matches: 88, Mismatches: 16, Indels: 18
0.72 0.13 0.15
Matches are distributed among these distances:
26 13 0.15
27 69 0.78
28 6 0.07
ACGTcount: A:0.21, C:0.21, G:0.22, T:0.36
Consensus pattern (26 bp):
TGGTGGCTCTGCCAAATTATCTGATT
Found at i:102830771 original size:54 final size:54
Alignment explanation
Indices: 102830684--102830826 Score: 198
Period size: 54 Copynumber: 2.6 Consensus size: 54
102830674 GGAGGAAGCG
* * *
102830684 TCCTGGTGGCTATGCCATAATTATCTGATTTGGTGGCTCTGCCACATATATCTA
1 TCCTGGTGGCTATGCCACAATTATCTGATTTGGTGGCTCAGCCACATATATATA
* *
102830738 TCCTAGTGGCTATGCCACAATTATCTGATTTGGTGGCTCAGCCACATATATATG
1 TCCTGGTGGCTATGCCACAATTATCTGATTTGGTGGCTCAGCCACATATATATA
* * *
102830792 TTCTGGTGGCTCTGCCACAA-TATCTGTATCTGGTG
1 TCCTGGTGGCTATGCCACAATTATCTG-ATTTGGTG
102830827 ACTTCGTCAC
Statistics
Matches: 79, Mismatches: 9, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
53 6 0.08
54 73 0.92
ACGTcount: A:0.20, C:0.22, G:0.22, T:0.36
Consensus pattern (54 bp):
TCCTGGTGGCTATGCCACAATTATCTGATTTGGTGGCTCAGCCACATATATATA
Found at i:102838729 original size:54 final size:54
Alignment explanation
Indices: 102838645--102838788 Score: 193
Period size: 54 Copynumber: 2.7 Consensus size: 54
102838635 TGGAGGAAGC
* *
102838645 GTCCTGGTGGCTATGCCATAATTATTTGATTTGGTGGCTCTA-CCACATATATCT
1 GTCCTGGTGGCTATGCCACAATTATCTGATTTGGTGGCTC-AGCCACATATATCT
*
102838699 GTCCTGGTGTCTATGCCACAATTATCTGATTTGGTGGCTCAGCCACATATATCT
1 GTCCTGGTGGCTATGCCACAATTATCTGATTTGGTGGCTCAGCCACATATATCT
* * * *
102838753 ATTCTGGTGGCTCTGCCACAA-TATCTGTATCTGGTG
1 GTCCTGGTGGCTATGCCACAATTATCTG-ATTTGGTG
102838789 ACTTCGTCAC
Statistics
Matches: 80, Mismatches: 8, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
53 7 0.09
54 73 0.91
ACGTcount: A:0.19, C:0.22, G:0.22, T:0.37
Consensus pattern (54 bp):
GTCCTGGTGGCTATGCCACAATTATCTGATTTGGTGGCTCAGCCACATATATCT
Found at i:102838785 original size:27 final size:27
Alignment explanation
Indices: 102838648--102838806 Score: 121
Period size: 27 Copynumber: 5.9 Consensus size: 27
102838638 AGGAAGCGTC
* * *
102838648 CTGGTGGCTATGCCATAATTATTTG-AT
1 CTGGTGGCTCTGCCACAA-TATCTGTAT
* * *
102838675 TTGGTGGCTCTACCACATATATCTGT-C
1 CTGGTGGCTCTGCCACA-ATATCTGTAT
* *
102838702 CTGGTGTCTATGCCACAATTATCTG-AT
1 CTGGTGGCTCTGCCACAA-TATCTGTAT
* * *
102838729 TTGGTGGCTCAGCCACATATATCTAT-T
1 CTGGTGGCTCTGCCACA-ATATCTGTAT
102838756 CTGGTGGCTCTGCCACAATATCTGTAT
1 CTGGTGGCTCTGCCACAATATCTGTAT
* *
102838783 CTGGTGACT-TCGTCACAATATCTG
1 CTGGTGGCTCT-GCCACAATATCTG
102838807 GCAGCCTCGC
Statistics
Matches: 103, Mismatches: 21, Indels: 16
0.74 0.15 0.11
Matches are distributed among these distances:
26 9 0.09
27 92 0.89
28 2 0.02
ACGTcount: A:0.21, C:0.23, G:0.20, T:0.36
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACAATATCTGTAT
Found at i:102848781 original size:8 final size:8
Alignment explanation
Indices: 102848754--102848787 Score: 50
Period size: 8 Copynumber: 4.2 Consensus size: 8
102848744 AATTAAGAAT
102848754 TATTATTA
1 TATTATTA
* *
102848762 TGTTAATA
1 TATTATTA
102848770 TATTATTA
1 TATTATTA
102848778 TATTATTA
1 TATTATTA
102848786 TA
1 TA
102848788 ATATAAATAA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
8 22 1.00
ACGTcount: A:0.38, C:0.00, G:0.03, T:0.59
Consensus pattern (8 bp):
TATTATTA
Found at i:102851089 original size:19 final size:20
Alignment explanation
Indices: 102851059--102851097 Score: 62
Period size: 19 Copynumber: 2.0 Consensus size: 20
102851049 AAAGGGACAT
102851059 TATGATTAAATTATGATGTG
1 TATGATTAAATTATGATGTG
*
102851079 TATGA-TAAATTATTATGTG
1 TATGATTAAATTATGATGTG
102851098 GTTATTTGTA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 13 0.72
20 5 0.28
ACGTcount: A:0.36, C:0.00, G:0.18, T:0.46
Consensus pattern (20 bp):
TATGATTAAATTATGATGTG
Found at i:102851454 original size:2 final size:2
Alignment explanation
Indices: 102851447--102851495 Score: 98
Period size: 2 Copynumber: 24.5 Consensus size: 2
102851437 TATGAAAATA
102851447 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
102851489 AG AG AG A
1 AG AG AG A
102851496 AAGATGATTA
Statistics
Matches: 47, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 47 1.00
ACGTcount: A:0.51, C:0.00, G:0.49, T:0.00
Consensus pattern (2 bp):
AG
Found at i:102851840 original size:20 final size:22
Alignment explanation
Indices: 102851810--102851852 Score: 63
Period size: 21 Copynumber: 2.0 Consensus size: 22
102851800 AAACCATAAA
*
102851810 TTTATTTTTTCTAAA-ATTATT
1 TTTATTTTTTCAAAATATTATT
102851831 TTTA-TTTTTCAAAATATTATT
1 TTTATTTTTTCAAAATATTATT
102851852 T
1 T
102851853 ACCGATTTTT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
20 9 0.45
21 11 0.55
ACGTcount: A:0.30, C:0.05, G:0.00, T:0.65
Consensus pattern (22 bp):
TTTATTTTTTCAAAATATTATT
Found at i:102851853 original size:19 final size:22
Alignment explanation
Indices: 102851809--102851853 Score: 62
Period size: 19 Copynumber: 2.2 Consensus size: 22
102851799 AAAACCATAA
102851809 ATTTATTTTTTCTAAAATTATT
1 ATTTATTTTTTCTAAAATTATT
102851831 -TTTA-TTTTTC-AAAA-TATT
1 ATTTATTTTTTCTAAAATTATT
102851849 ATTTA
1 ATTTA
102851854 CCGATTTTTT
Statistics
Matches: 22, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
18 4 0.18
19 8 0.36
20 6 0.27
21 4 0.18
ACGTcount: A:0.33, C:0.04, G:0.00, T:0.62
Consensus pattern (22 bp):
ATTTATTTTTTCTAAAATTATT
Found at i:102853388 original size:14 final size:14
Alignment explanation
Indices: 102853315--102853380 Score: 114
Period size: 14 Copynumber: 4.7 Consensus size: 14
102853305 CATGCTTGCG
102853315 GATTCATAGATGTA
1 GATTCATAGATGTA
102853329 GATTCATAGATGTA
1 GATTCATAGATGTA
*
102853343 GATTCATAGATATA
1 GATTCATAGATGTA
*
102853357 GATTCATAGATGCA
1 GATTCATAGATGTA
102853371 GATTCATAGA
1 GATTCATAGA
102853381 CGAGGATTGT
Statistics
Matches: 49, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 49 1.00
ACGTcount: A:0.38, C:0.09, G:0.20, T:0.33
Consensus pattern (14 bp):
GATTCATAGATGTA
Found at i:102865694 original size:25 final size:25
Alignment explanation
Indices: 102865666--102865714 Score: 82
Period size: 26 Copynumber: 2.0 Consensus size: 25
102865656 ATATATATCA
102865666 TAAA-ATAGCATATAAAAGAAATGAT
1 TAAACATAGCATATAAAA-AAATGAT
102865691 TAAACATAGCATATAAAAAAATGA
1 TAAACATAGCATATAAAAAAATGA
102865715 AACTATGCAC
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
25 10 0.43
26 13 0.57
ACGTcount: A:0.61, C:0.06, G:0.10, T:0.22
Consensus pattern (25 bp):
TAAACATAGCATATAAAAAAATGAT
Found at i:102866282 original size:19 final size:19
Alignment explanation
Indices: 102866221--102866299 Score: 117
Period size: 19 Copynumber: 4.2 Consensus size: 19
102866211 AGATTATAAG
102866221 ATCATATCTTCAAGATTGCAT
1 ATCATATC-T-AAGATTGCAT
*
102866242 ATCATATCTAAGACTG--T
1 ATCATATCTAAGATTGCAT
102866259 ATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGCAT
102866278 ATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGCAT
102866297 ATC
1 ATC
102866300 CTTAAAGATT
Statistics
Matches: 54, Mismatches: 2, Indels: 6
0.87 0.03 0.10
Matches are distributed among these distances:
17 16 0.30
19 29 0.54
20 1 0.02
21 8 0.15
ACGTcount: A:0.35, C:0.18, G:0.10, T:0.37
Consensus pattern (19 bp):
ATCATATCTAAGATTGCAT
Found at i:102868365 original size:171 final size:171
Alignment explanation
Indices: 102868080--102868421 Score: 639
Period size: 171 Copynumber: 2.0 Consensus size: 171
102868070 GAGTCAACAG
* *
102868080 ATGAAACTGAGACTGAAGCTAATTCAGTTGCAGACACAGAAGAGGAAGAATCTGATAAAGAATCG
1 ATGAAACTGAGACTGAAGCTAATTCAGTTGCAGACACAGAAGAGGAAGAATCTAATAAAGAACCG
102868145 AATAGTTCTAAACCAGTTGAAGGATCTGAAAACCCTGAACCAAGGGTTGAGCCAGAAGAAGAACT
66 AATAGTTCTAAACCAGTTGAAGGATCTGAAAACCCTGAACCAAGGGTTGAGCCAGAAGAAGAACT
102868210 AGTCAAGCTAAGTGTTGAACCTAAATCTGCAACTCCTATGC
131 AGTCAAGCTAAGTGTTGAACCTAAATCTGCAACTCCTATGC
*
102868251 ATGAAACTGAGACTGAAGCTAATTCAGTTGCAGACATAGAAGAGGAAGAATCTAATAAAGAACCG
1 ATGAAACTGAGACTGAAGCTAATTCAGTTGCAGACACAGAAGAGGAAGAATCTAATAAAGAACCG
* *
102868316 AATAGTTCTAAACTAGTTGAAGGATCTGAAAACCCTGAACCAAGGGTTGAGCCAGAAGAAGAATT
66 AATAGTTCTAAACCAGTTGAAGGATCTGAAAACCCTGAACCAAGGGTTGAGCCAGAAGAAGAACT
102868381 AGTCAAGCTAAGTGTTGAACCTAAATCTGCAACTCCTATGC
131 AGTCAAGCTAAGTGTTGAACCTAAATCTGCAACTCCTATGC
102868422 CGACTTCTGC
Statistics
Matches: 166, Mismatches: 5, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
171 166 1.00
ACGTcount: A:0.39, C:0.18, G:0.22, T:0.21
Consensus pattern (171 bp):
ATGAAACTGAGACTGAAGCTAATTCAGTTGCAGACACAGAAGAGGAAGAATCTAATAAAGAACCG
AATAGTTCTAAACCAGTTGAAGGATCTGAAAACCCTGAACCAAGGGTTGAGCCAGAAGAAGAACT
AGTCAAGCTAAGTGTTGAACCTAAATCTGCAACTCCTATGC
Found at i:102870884 original size:7 final size:7
Alignment explanation
Indices: 102870872--102870896 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
102870862 ACATTTCTAA
102870872 TCATCCC
1 TCATCCC
102870879 TCATCCC
1 TCATCCC
102870886 TCATCCC
1 TCATCCC
102870893 TCAT
1 TCAT
102870897 TCATCATCAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.16, C:0.52, G:0.00, T:0.32
Consensus pattern (7 bp):
TCATCCC
Found at i:102870903 original size:14 final size:14
Alignment explanation
Indices: 102870871--102870904 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
102870861 CACATTTCTA
102870871 ATCATCCCTCATCC
1 ATCATCCCTCATCC
* *
102870885 CTCATCCCTCATTC
1 ATCATCCCTCATCC
102870899 ATCATC
1 ATCATC
102870905 ATTCTCTCCT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.21, C:0.47, G:0.00, T:0.32
Consensus pattern (14 bp):
ATCATCCCTCATCC
Found at i:102873408 original size:22 final size:22
Alignment explanation
Indices: 102873380--102873423 Score: 88
Period size: 22 Copynumber: 2.0 Consensus size: 22
102873370 CGAAGATTGA
102873380 AAGACAATTGGAGAGTCAACAC
1 AAGACAATTGGAGAGTCAACAC
102873402 AAGACAATTGGAGAGTCAACAC
1 AAGACAATTGGAGAGTCAACAC
102873424 GCTATCATCT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.45, C:0.18, G:0.23, T:0.14
Consensus pattern (22 bp):
AAGACAATTGGAGAGTCAACAC
Found at i:102873769 original size:28 final size:28
Alignment explanation
Indices: 102873721--102873777 Score: 71
Period size: 28 Copynumber: 2.0 Consensus size: 28
102873711 CATAATTGGC
*
102873721 AATGAGTTATAATAATGAGACAATCTTG
1 AATGAGTTATAAGAATGAGACAATCTTG
* *
102873749 AATGTGTTATAAGACAT-AGACATTCTTG
1 AATGAGTTATAAGA-ATGAGACAATCTTG
102873777 A
1 A
102873778 TACAAGAGAA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
28 23 0.92
29 2 0.08
ACGTcount: A:0.40, C:0.09, G:0.18, T:0.33
Consensus pattern (28 bp):
AATGAGTTATAAGAATGAGACAATCTTG
Found at i:102876294 original size:41 final size:41
Alignment explanation
Indices: 102876206--102876366 Score: 180
Period size: 41 Copynumber: 3.9 Consensus size: 41
102876196 AATACTCAAT
* * * *
102876206 ATCTCGCACACTAAGTGCCAATACCTAGTCGGAGCTATTATA
1 ATCTCGCACATTAAGTGCC-ATACATAGCCGAAGCTATTATA
* * *
102876248 GTCTCGCACATTAAGTACCTTACATAGCCGAAGCTATTATA
1 ATCTCGCACATTAAGTGCCATACATAGCCGAAGCTATTATA
* * **
102876289 ATCTCGCACATTAAGTGCCTTACATAGCTGAAGCTATCT-CG
1 ATCTCGCACATTAAGTGCCATACATAGCCGAAGCTAT-TATA
* *
102876330 GTCTCGCACATTAAGTGCCATATATAGCCGAAGCTAT
1 ATCTCGCACATTAAGTGCCATACATAGCCGAAGCTAT
102876367 ATTGAATCGA
Statistics
Matches: 102, Mismatches: 16, Indels: 3
0.84 0.13 0.02
Matches are distributed among these distances:
41 85 0.83
42 17 0.17
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (41 bp):
ATCTCGCACATTAAGTGCCATACATAGCCGAAGCTATTATA
Found at i:102876810 original size:40 final size:40
Alignment explanation
Indices: 102876766--102876846 Score: 153
Period size: 40 Copynumber: 2.0 Consensus size: 40
102876756 CCAAATTTAA
*
102876766 TACATGTTACTAGCAGCCCATATTTTCAATTTATTCACAC
1 TACATGTTACTAGCAGCCCATATTTTAAATTTATTCACAC
102876806 TACATGTTACTAGCAGCCCATATTTTAAATTTATTCACAC
1 TACATGTTACTAGCAGCCCATATTTTAAATTTATTCACAC
102876846 T
1 T
102876847 TTTAACCACC
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
40 40 1.00
ACGTcount: A:0.31, C:0.23, G:0.07, T:0.38
Consensus pattern (40 bp):
TACATGTTACTAGCAGCCCATATTTTAAATTTATTCACAC
Found at i:102887009 original size:41 final size:41
Alignment explanation
Indices: 102886964--102887068 Score: 95
Period size: 41 Copynumber: 2.5 Consensus size: 41
102886954 GGGTGATGGA
*
102886964 ATCAGGACTTGAGCCTAGCAGGCTTCATGCCAGTGT-ATTGT
1 ATCAGG-CTTGAGCCTAGCAGGCTTCATGCCAATGTAATTGT
* * * * * *
102887005 ATCAGGTTTTATACTTAGCAGGCTTTATGCTAATGTAATTGT
1 ATCAGGCTTGA-GCCTAGCAGGCTTCATGCCAATGTAATTGT
* *
102887047 AACAGGCCTCGAGCCTAGCAGG
1 ATCAGG-CTTGAGCCTAGCAGG
102887069 TATTGAGTCA
Statistics
Matches: 48, Mismatches: 13, Indels: 5
0.73 0.20 0.08
Matches are distributed among these distances:
40 3 0.06
41 25 0.52
42 18 0.38
43 2 0.04
ACGTcount: A:0.25, C:0.20, G:0.25, T:0.30
Consensus pattern (41 bp):
ATCAGGCTTGAGCCTAGCAGGCTTCATGCCAATGTAATTGT
Found at i:102896161 original size:43 final size:42
Alignment explanation
Indices: 102896108--102896225 Score: 105
Period size: 43 Copynumber: 2.8 Consensus size: 42
102896098 TGACGTATCG
* *
102896108 TACCAATGCCATGTCCCAGACATGGTCTTACATAGAAATCTCA
1 TACCGATGCCATGTCCCAGACATGGTCTTACA-AGAAACCTCA
** * **
102896151 TATTGATGCCAATAG-CCCAG-CTATGGTCTTACACGATGCCTCA
1 TACCGATGCC-AT-GTCCCAGAC-ATGGTCTTACAAGAAACCTCA
* *
102896194 TGCCGATGCCATGTCCCAAACATGGTCTTACA
1 TACCGATGCCATGTCCCAGACATGGTCTTACA
102896226 CTGGCTCACA
Statistics
Matches: 59, Mismatches: 11, Indels: 11
0.73 0.14 0.14
Matches are distributed among these distances:
41 1 0.02
42 17 0.29
43 22 0.37
44 18 0.31
45 1 0.02
ACGTcount: A:0.28, C:0.29, G:0.17, T:0.26
Consensus pattern (42 bp):
TACCGATGCCATGTCCCAGACATGGTCTTACAAGAAACCTCA
Found at i:102896271 original size:48 final size:47
Alignment explanation
Indices: 102896197--102896466 Score: 369
Period size: 48 Copynumber: 5.6 Consensus size: 47
102896187 TGCCTCATGC
* * *
102896197 CGATGCCATGTCCCAAACATGGTCTTACACTGGCTCACATAATAATG
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACGTAACAATG
* * *
102896244 TCGATGCCATGTCCCAGACATGTTCTTACACTGGCTTACGTAATAATG
1 -CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACGTAACAATG
102896292 CTGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACGTAACAATG
1 C-GATGCCATGTCCCAGACATGGTCTTACACTGGCTCACGTAACAATG
* * *
102896340 CCGATGCTATGTCCCAGACATGCTCTTACACTGGCTTACGTAACAATG
1 -CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACGTAACAATG
* *
102896388 CTGATGACATGTCCCAGACATGGTCTTACACTGGATCACGTAACAATG
1 C-GATGCCATGTCCCAGACATGGTCTTACACTGGCTCACGTAACAATG
* * *
102896436 CCATTTCCATGTCCCAAACATGGTCTTACAC
1 CGA-TGCCATGTCCCAGACATGGTCTTACAC
102896467 GGTTACACAT
Statistics
Matches: 199, Mismatches: 19, Indels: 8
0.88 0.08 0.04
Matches are distributed among these distances:
47 3 0.02
48 195 0.98
49 1 0.01
ACGTcount: A:0.27, C:0.28, G:0.18, T:0.27
Consensus pattern (47 bp):
CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACGTAACAATG
Found at i:102898922 original size:27 final size:28
Alignment explanation
Indices: 102898838--102898935 Score: 135
Period size: 27 Copynumber: 3.5 Consensus size: 28
102898828 CATGAGATTG
* * * *
102898838 GCACTAAGTGTGCGGGTTTAAATTGTACA
1 GCACTAAGTGTGCGAGTTT-GATTATATA
102898867 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
102898895 GCACTAAGTGTGCGAG-TTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
102898922 GCACTGAGTGTGCG
1 GCACTAAGTGTGCG
102898936 GACTTAATAT
Statistics
Matches: 64, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
27 24 0.38
28 22 0.34
29 18 0.28
ACGTcount: A:0.27, C:0.13, G:0.29, T:0.32
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:102898946 original size:27 final size:27
Alignment explanation
Indices: 102898866--102898948 Score: 96
Period size: 27 Copynumber: 3.0 Consensus size: 27
102898856 TAAATTGTAC
* *
102898866 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGA-CTTGAATATAT
* *
102898894 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGACTTGAATATAT
*
102898921 AGCACTGAGTGTGCGGACTT-AATATAT
1 AGCACTAAGTGTGC-GACTTGAATATAT
102898948 A
1 A
102898949 TTTTTGAATC
Statistics
Matches: 50, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
27 30 0.60
28 20 0.40
ACGTcount: A:0.30, C:0.12, G:0.25, T:0.33
Consensus pattern (27 bp):
AGCACTAAGTGTGCGACTTGAATATAT
Found at i:102898949 original size:29 final size:27
Alignment explanation
Indices: 102898838--102898949 Score: 98
Period size: 28 Copynumber: 4.0 Consensus size: 27
102898828 CATGAGATTG
** * *
102898838 GCACTAAGTGTGCGGGTTTAAATTGTACA
1 GCACTAAGTGTGC-GACTT-AATTATATA
* *
102898867 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGA-CTTAATTATATA
* *
102898895 GCACTAAGTGTGCGAGTTGATTATATA
1 GCACTAAGTGTGCGACTTAATTATATA
*
102898922 GCACTGAGTGTGCGGACTTAATATATAT
1 GCACTAAGTGTGC-GACTTAAT-TATAT
102898950 TTTTGAATCA
Statistics
Matches: 72, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
27 23 0.32
28 28 0.39
29 21 0.29
ACGTcount: A:0.29, C:0.12, G:0.26, T:0.33
Consensus pattern (27 bp):
GCACTAAGTGTGCGACTTAATTATATA
Found at i:102908195 original size:13 final size:13
Alignment explanation
Indices: 102908177--102908203 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
102908167 AAAGTAATCG
102908177 CACACGGGCATGT
1 CACACGGGCATGT
102908190 CACACGGGCATGT
1 CACACGGGCATGT
102908203 C
1 C
102908204 CCTACCAAGC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.22, C:0.33, G:0.30, T:0.15
Consensus pattern (13 bp):
CACACGGGCATGT
Found at i:102914416 original size:11 final size:10
Alignment explanation
Indices: 102914398--102914443 Score: 50
Period size: 8 Copynumber: 5.2 Consensus size: 10
102914388 TTTAGGATAC
102914398 ATTTTGATTG
1 ATTTTGATTG
102914408 A-TTT-A-TG
1 ATTTTGATTG
102914415 ATTTTGATTG
1 ATTTTGATTG
102914425 A-TTT-A-TG
1 ATTTTGATTG
102914432 ATTTTGATTG
1 ATTTTGATTG
102914442 AT
1 AT
102914444 ATATCTTGAA
Statistics
Matches: 30, Mismatches: 0, Indels: 12
0.71 0.00 0.29
Matches are distributed among these distances:
7 6 0.20
8 8 0.27
9 8 0.27
10 8 0.27
ACGTcount: A:0.24, C:0.00, G:0.17, T:0.59
Consensus pattern (10 bp):
ATTTTGATTG
Found at i:102914420 original size:17 final size:17
Alignment explanation
Indices: 102914398--102914443 Score: 92
Period size: 17 Copynumber: 2.7 Consensus size: 17
102914388 TTTAGGATAC
102914398 ATTTTGATTGATTTATG
1 ATTTTGATTGATTTATG
102914415 ATTTTGATTGATTTATG
1 ATTTTGATTGATTTATG
102914432 ATTTTGATTGAT
1 ATTTTGATTGAT
102914444 ATATCTTGAA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 29 1.00
ACGTcount: A:0.24, C:0.00, G:0.17, T:0.59
Consensus pattern (17 bp):
ATTTTGATTGATTTATG
Found at i:102923418 original size:91 final size:91
Alignment explanation
Indices: 102923262--102923439 Score: 302
Period size: 91 Copynumber: 2.0 Consensus size: 91
102923252 GTCTAAGCTT
102923262 GACTTACCTCGTATTTGCACAGTCATGGTGGCTCGAGGAGTTAAAACTCCTCATTCCTGCAATCA
1 GACTTACCTCGTATTTGCACAGTCATGGTGGCTCGAGGAGTTAAAACTCCTCATTCCTGCAATCA
102923327 ATCTTATCAAAATAAGGTTTTAACTC
66 ATCTTATCAAAATAAGGTTTTAACTC
* * * * * *
102923353 GACTTACCTCGTATTTGTACGGTCATGGTGGCTCGAGGAGTTGAAACTCCTTATTCTTGCTATCA
1 GACTTACCTCGTATTTGCACAGTCATGGTGGCTCGAGGAGTTAAAACTCCTCATTCCTGCAATCA
102923418 ATCTTATCAAAATAAGGTTTTA
66 ATCTTATCAAAATAAGGTTTTA
102923440 GATGAGTACT
Statistics
Matches: 81, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
91 81 1.00
ACGTcount: A:0.27, C:0.21, G:0.18, T:0.34
Consensus pattern (91 bp):
GACTTACCTCGTATTTGCACAGTCATGGTGGCTCGAGGAGTTAAAACTCCTCATTCCTGCAATCA
ATCTTATCAAAATAAGGTTTTAACTC
Found at i:102926804 original size:12 final size:12
Alignment explanation
Indices: 102926787--102926811 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
102926777 ATGTAAGTGA
102926787 TCTTGATGATTT
1 TCTTGATGATTT
102926799 TCTTGATGATTT
1 TCTTGATGATTT
102926811 T
1 T
102926812 TATATTTTTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.16, C:0.08, G:0.16, T:0.60
Consensus pattern (12 bp):
TCTTGATGATTT
Found at i:102927588 original size:46 final size:45
Alignment explanation
Indices: 102927530--102927698 Score: 137
Period size: 46 Copynumber: 3.6 Consensus size: 45
102927520 AGGGCATTGT
*
102927530 GAGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCACATTATGA
1 GAGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCACA-GATGA
* * * * *
102927576 GAGCTAGAGTAAGACCATTTTTGGGACATGGCATCGAAG-TAGAGATGA
1 GAGCTAGTGTAAGA-CATGTCTGGGACAT-GCATCG--GCCACAGATGA
** * *
102927624 GTCCTAGTGTAAGACATGTCTAGGACATGCATCGGCTA-AGA-GA
1 GAGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCACAGATGA
**
102927667 TTTTGCTAGTGTAAGACCATGTCTGGGACATG
1 --GAGCTAGTGTAAGA-CATGTCTGGGACATG
102927699 GCATTCGCAC
Statistics
Matches: 100, Mismatches: 15, Indels: 16
0.76 0.11 0.12
Matches are distributed among these distances:
43 2 0.02
44 4 0.04
45 14 0.14
46 33 0.33
47 23 0.23
48 21 0.21
49 2 0.02
50 1 0.01
ACGTcount: A:0.29, C:0.17, G:0.29, T:0.25
Consensus pattern (45 bp):
GAGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCACAGATGA
Found at i:102927751 original size:40 final size:40
Alignment explanation
Indices: 102927690--102927768 Score: 140
Period size: 40 Copynumber: 2.0 Consensus size: 40
102927680 AGACCATGTC
* *
102927690 TGGGACATGGCATTCGCACACATATACGAGAGCTAGTGTT
1 TGGGACATGGCATTAGAACACATATACGAGAGCTAGTGTT
102927730 TGGGACATGGCATTAGAACACATATACGAGAGCTAGTGT
1 TGGGACATGGCATTAGAACACATATACGAGAGCTAGTGT
102927769 AAGACTATGT
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
40 37 1.00
ACGTcount: A:0.30, C:0.18, G:0.28, T:0.24
Consensus pattern (40 bp):
TGGGACATGGCATTAGAACACATATACGAGAGCTAGTGTT
Found at i:102927977 original size:20 final size:20
Alignment explanation
Indices: 102927952--102927991 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
102927942 GGTAACGAGT
102927952 AAGTCAAGCTTATGCTTACC
1 AAGTCAAGCTTATGCTTACC
102927972 AAGTCAAGCTTATGCTTACC
1 AAGTCAAGCTTATGCTTACC
102927992 CTTATGTTAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.30, C:0.25, G:0.15, T:0.30
Consensus pattern (20 bp):
AAGTCAAGCTTATGCTTACC
Found at i:102931769 original size:12 final size:12
Alignment explanation
Indices: 102931752--102931776 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
102931742 ATGTAAGTGA
102931752 TCTTGATGATTT
1 TCTTGATGATTT
102931764 TCTTGATGATTT
1 TCTTGATGATTT
102931776 T
1 T
102931777 TATATTTTTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.16, C:0.08, G:0.16, T:0.60
Consensus pattern (12 bp):
TCTTGATGATTT
Found at i:102932607 original size:47 final size:46
Alignment explanation
Indices: 102932497--102932719 Score: 161
Period size: 47 Copynumber: 4.8 Consensus size: 46
102932487 GGCATTGTTA
* * * ** *
102932497 GCTAGTGTAAGACATGTTTAGGACATGCATCAACCATA-TTATGAGA
1 GCTAGTGTAAGACATGTCTGGGACATGCATC-AGCATAGAGATGAGT
* * * * *
102932543 GCCAGAGTAAGTCCATGTTTGTGACATGGCATCAGCATAGAGATGAGT
1 GCTAGTGTAAG-ACATGTCTGGGACAT-GCATCAGCATAGAGATGAGT
* *
102932591 GCTAGTGTAAGACATGTCTGGGACATGCATC-GTCCTCGATGATGA-T
1 GCTAGTGTAAGACATGTCTGGGACATGCATCAG-CATAGA-GATGAGT
* * **
102932637 AGCCAGTGTAAGACATGTCTGGGACATGCAT-TGTC-TAAGAGAT-TTT
1 -GCTAGTGTAAGACATGTCTGGGACATGCATCAG-CAT-AGAGATGAGT
102932683 GCTAGTGTAAGACGATGTCTGGGACATGGCATCAGCA
1 GCTAGTGTAAGAC-ATGTCTGGGACAT-GCATCAGCA
102932720 CACATATACG
Statistics
Matches: 143, Mismatches: 21, Indels: 24
0.76 0.11 0.13
Matches are distributed among these distances:
45 13 0.09
46 37 0.26
47 73 0.51
48 20 0.14
ACGTcount: A:0.29, C:0.17, G:0.27, T:0.27
Consensus pattern (46 bp):
GCTAGTGTAAGACATGTCTGGGACATGCATCAGCATAGAGATGAGT
Found at i:102932663 original size:94 final size:92
Alignment explanation
Indices: 102932497--102932716 Score: 223
Period size: 94 Copynumber: 2.3 Consensus size: 92
102932487 GGCATTGTTA
* * * * *
102932497 GCTAGTGTAAGACATGTTTAGGACATGCATCAACCATATTATGAGAGCCAGAGTAAGTCCATGTT
1 GCTAGTGTAAGACATGTCTGGGACATGCATCAACCATATGATGAGAGCCAGAGTAAGTACATGTC
*
102932562 TGTGACATGGCATCAG-C-ATAGAGATGAGT
66 TGGGACAT-GCAT-AGTCTA-AGAGAT-AGT
** * *
102932591 GCTAGTGTAAGACATGTCTGGGACATGCATCGTCC-TCGATGATGATAGCCAGTGTAAG-ACATG
1 GCTAGTGTAAGACATGTCTGGGACATGCATCAACCAT--ATGATGAGAGCCAGAGTAAGTACATG
* **
102932654 TCTGGGACATGCATTGTCTAAGAGATTTT
64 TCTGGGACATGCATAGTCTAAGAGATAGT
102932683 GCTAGTGTAAGACGATGTCTGGGACATGGCATCA
1 GCTAGTGTAAGAC-ATGTCTGGGACAT-GCATCA
102932717 GCACACATAT
Statistics
Matches: 106, Mismatches: 14, Indels: 12
0.80 0.11 0.09
Matches are distributed among these distances:
92 15 0.14
93 25 0.24
94 49 0.46
95 17 0.16
ACGTcount: A:0.29, C:0.17, G:0.27, T:0.27
Consensus pattern (92 bp):
GCTAGTGTAAGACATGTCTGGGACATGCATCAACCATATGATGAGAGCCAGAGTAAGTACATGTC
TGGGACATGCATAGTCTAAGAGATAGT
Found at i:102947930 original size:20 final size:20
Alignment explanation
Indices: 102947905--102947946 Score: 84
Period size: 20 Copynumber: 2.1 Consensus size: 20
102947895 TTAAGTACGT
102947905 CTATTTGCTTATAAACTTAC
1 CTATTTGCTTATAAACTTAC
102947925 CTATTTGCTTATAAACTTAC
1 CTATTTGCTTATAAACTTAC
102947945 CT
1 CT
102947947 CGGACGATGT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.29, C:0.21, G:0.05, T:0.45
Consensus pattern (20 bp):
CTATTTGCTTATAAACTTAC
Found at i:102952284 original size:26 final size:26
Alignment explanation
Indices: 102952253--102952359 Score: 180
Period size: 26 Copynumber: 4.2 Consensus size: 26
102952243 TGAAATGCCC
*
102952253 ATCATGGAACATTTACCTAAACCATT
1 ATCATGGAACATTTACCTAACCCATT
102952279 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
* *
102952305 A-CATGGAATATTTACCTAATCCATT
1 ATCATGGAACATTTACCTAACCCATT
102952330 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
102952356 ATCA
1 ATCA
102952360 ATTTGTACCA
Statistics
Matches: 75, Mismatches: 5, Indels: 2
0.91 0.06 0.02
Matches are distributed among these distances:
25 23 0.31
26 52 0.69
ACGTcount: A:0.36, C:0.24, G:0.07, T:0.32
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:102952329 original size:51 final size:51
Alignment explanation
Indices: 102952255--102952356 Score: 186
Period size: 51 Copynumber: 2.0 Consensus size: 51
102952245 AAATGCCCAT
102952255 CATGGAACATTTACCTAAACCATTATCATGGAACATTTACCTAACCCATTA
1 CATGGAACATTTACCTAAACCATTATCATGGAACATTTACCTAACCCATTA
* *
102952306 CATGGAATATTTACCTAATCCATTATCATGGAACATTTACCTAACCCATTA
1 CATGGAACATTTACCTAAACCATTATCATGGAACATTTACCTAACCCATTA
102952357 TCAATTTGTA
Statistics
Matches: 49, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
51 49 1.00
ACGTcount: A:0.36, C:0.25, G:0.08, T:0.31
Consensus pattern (51 bp):
CATGGAACATTTACCTAAACCATTATCATGGAACATTTACCTAACCCATTA
Found at i:102958067 original size:26 final size:26
Alignment explanation
Indices: 102958036--102958143 Score: 189
Period size: 26 Copynumber: 4.2 Consensus size: 26
102958026 TGAAATGCCC
*
102958036 ATCATGGAACATTTACCTAAACCATT
1 ATCATGGAACATTTACCTAACCCATT
102958062 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
* *
102958088 ATCATGGAATATTTACCTAATCCATT
1 ATCATGGAACATTTACCTAACCCATT
102958114 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
102958140 ATCA
1 ATCA
102958144 ATTTGTACCA
Statistics
Matches: 77, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 77 1.00
ACGTcount: A:0.36, C:0.24, G:0.07, T:0.32
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:102960743 original size:228 final size:228
Alignment explanation
Indices: 102960346--102961004 Score: 701
Period size: 228 Copynumber: 2.9 Consensus size: 228
102960336 TCCAATTAAG
* * ** *
102960346 ATGCAGATCTTCGTTAAGACCCTGACCGGCAAGACCATCACCCTCGAAGTCGAGAGTTCCGACAC
1 ATGCAGATCTTCGTCAAGACCCTGACCGGCAAGACCATAACTTTGGAAGTCGAGAGTTCCGACAC
* * * *
102960411 GATCGACAACGTTAAGGCGAAA-ATCCAAGACAAGGAAGGGATCCCACCAGACCAACAACGTCTC
66 GATCGACAACGTTAAGGC-AAAGATCCAAGACAAGGAAGGAATCCCACCAGACCAGCAAAGGCTC
* * * *
102960475 ATCTTCGCCGGAAAACAGCTCGAAGATGGCCGGACCTTGGCCGATTACAACATCCAGAAGGAGTC
130 ATATTCGCCGGAAAACAACTCGAAGACGGCCGCACCTTGGCCGATTACAACATCCAGAAGGAGTC
* * *
102960540 CACCCTCCATCTT-GTCCTCCGTCTACGTGGTGGC
195 CACCCTCCAT-TTGGTACTCAGGCTACGTGGTGGC
* * * *
102960574 ATGCAGATCTTCGTCAAAACCCTGACCGGCAAGACCATAACTTTGGAAGTCGAAAGCTCTGACAC
1 ATGCAGATCTTCGTCAAGACCCTGACCGGCAAGACCATAACTTTGGAAGTCGAGAGTTCCGACAC
* * * *
102960639 CATTGACAACGTCAAGGCAAAGATCCAAGACAAGGAAGGCATCCCACCAGACCAGCAAAGGCTCA
66 GATCGACAACGTTAAGGCAAAGATCCAAGACAAGGAAGGAATCCCACCAGACCAGCAAAGGCTCA
* * * *
102960704 TATTTGCCGGGAAACAACTCGAGGACGGTCGCACCTTGGCCGATTACAACATCCAGAAGGAGTCC
131 TATTCGCCGGAAAACAACTCGAAGACGGCCGCACCTTGGCCGATTACAACATCCAGAAGGAGTCC
* * * *
102960769 ACCCTCCATTTGGTATTGAGGCTTCGTGGTGGG
196 ACCCTCCATTTGGTACTCAGGCTACGTGGTGGC
* ** * * * * * *
102960802 ATGCAGATTTTCGTCAAGACGTTGACTGGGAAAACCATAACTTTGGAGGTGGAGAGTTCCGATAC
1 ATGCAGATCTTCGTCAAGACCCTGACCGGCAAGACCATAACTTTGGAAGTCGAGAGTTCCGACAC
* * * * * * * * *
102960867 GATCGACAATGTTAAGGCGAAGATTCAGGACAAAGAAGGAATTCCACCAGATCAGCAAAGGTTGA
66 GATCGACAACGTTAAGGCAAAGATCCAAGACAAGGAAGGAATCCCACCAGACCAGCAAAGGCTCA
* * * * * * ** * * * * * *
102960932 TTTTCGCTGGGAAACAATTGGAAGATGGAAGGACTTTGGCTGATTACAATATTCAGAAGGAATCC
131 TATTCGCCGGAAAACAACTCGAAGACGGCCGCACCTTGGCCGATTACAACATCCAGAAGGAGTCC
*
102960997 ACTCTCCA
196 ACCCTCCA
102961005 CCTTGTCTTG
Statistics
Matches: 356, Mismatches: 73, Indels: 4
0.82 0.17 0.01
Matches are distributed among these distances:
227 5 0.01
228 351 0.99
ACGTcount: A:0.31, C:0.25, G:0.24, T:0.20
Consensus pattern (228 bp):
ATGCAGATCTTCGTCAAGACCCTGACCGGCAAGACCATAACTTTGGAAGTCGAGAGTTCCGACAC
GATCGACAACGTTAAGGCAAAGATCCAAGACAAGGAAGGAATCCCACCAGACCAGCAAAGGCTCA
TATTCGCCGGAAAACAACTCGAAGACGGCCGCACCTTGGCCGATTACAACATCCAGAAGGAGTCC
ACCCTCCATTTGGTACTCAGGCTACGTGGTGGC
Found at i:102973584 original size:33 final size:33
Alignment explanation
Indices: 102973542--102973607 Score: 123
Period size: 33 Copynumber: 2.0 Consensus size: 33
102973532 GGGCAAAATG
*
102973542 GTCAATTGGAAGAGAGAGAAATGTAGAAAGTAA
1 GTCAATTGGAAGAGAGAGAAATCTAGAAAGTAA
102973575 GTCAATTGGAAGAGAGAGAAATCTAGAAAGTAA
1 GTCAATTGGAAGAGAGAGAAATCTAGAAAGTAA
102973608 TGATGATGTT
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 32 1.00
ACGTcount: A:0.48, C:0.05, G:0.29, T:0.18
Consensus pattern (33 bp):
GTCAATTGGAAGAGAGAGAAATCTAGAAAGTAA
Found at i:102973678 original size:31 final size:31
Alignment explanation
Indices: 102973636--102973701 Score: 82
Period size: 31 Copynumber: 2.1 Consensus size: 31
102973626 TTTATAGTTA
*
102973636 TTTAATTAGATAAT-TATTATT-TATTTAATAT
1 TTTAATAAGAT-ATGTATTATTAT-TTTAATAT
*
102973667 TTTAATAAGATATGTATTATTATTTTATTAT
1 TTTAATAAGATATGTATTATTATTTTAATAT
102973698 TTTA
1 TTTA
102973702 CTTAGTATAT
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
30 2 0.06
31 28 0.90
32 1 0.03
ACGTcount: A:0.36, C:0.00, G:0.05, T:0.59
Consensus pattern (31 bp):
TTTAATAAGATATGTATTATTATTTTAATAT
Found at i:102973722 original size:2 final size:2
Alignment explanation
Indices: 102973717--102973752 Score: 72
Period size: 2 Copynumber: 18.0 Consensus size: 2
102973707 TATATATATA
102973717 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
102973753 AAAGAAAGAA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.00, C:0.00, G:0.50, T:0.50
Consensus pattern (2 bp):
TG
Found at i:102976679 original size:20 final size:21
Alignment explanation
Indices: 102976654--102976702 Score: 66
Period size: 20 Copynumber: 2.4 Consensus size: 21
102976644 ATTATTTAAT
*
102976654 TATAATTAACTTAA-TTAACC
1 TATAATTAACTAAACTTAACC
*
102976674 TATAATTAACTAAACTTAAGC
1 TATAATTAACTAAACTTAACC
102976695 T-TAATTAA
1 TATAATTAA
102976703 AAAATTTATA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
20 20 0.77
21 6 0.23
ACGTcount: A:0.47, C:0.12, G:0.02, T:0.39
Consensus pattern (21 bp):
TATAATTAACTAAACTTAACC
Found at i:102981927 original size:58 final size:58
Alignment explanation
Indices: 102981837--102981954 Score: 200
Period size: 58 Copynumber: 2.0 Consensus size: 58
102981827 ATCCAAACAT
* *
102981837 TGGAATCACGATACCTACAATAGACGGGAAGATTGGTGATCACCTCTCAATGGTATCG
1 TGGAATCACGATACCTACAATAGACGGGAAGATTGGAGACCACCTCTCAATGGTATCG
* *
102981895 TGGAATCACGATACCTACAATAGACGTGAAGATTGGAGACCGCCTCTCAATGGTATCG
1 TGGAATCACGATACCTACAATAGACGGGAAGATTGGAGACCACCTCTCAATGGTATCG
102981953 TG
1 TG
102981955 ATATCCACCC
Statistics
Matches: 56, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
58 56 1.00
ACGTcount: A:0.31, C:0.21, G:0.25, T:0.24
Consensus pattern (58 bp):
TGGAATCACGATACCTACAATAGACGGGAAGATTGGAGACCACCTCTCAATGGTATCG
Done.