Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A06
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 115140250
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2234201 characters in sequence are not A, C, G, or T
File 307 of 345
Found at i:103822043 original size:22 final size:23
Alignment explanation
Indices: 103822018--103822067 Score: 57
Period size: 22 Copynumber: 2.2 Consensus size: 23
103822008 TTTCAAATTG
*
103822018 TTTTGTATCTTATTTA-TGTTAA
1 TTTTGTATATTATTTATTGTTAA
* * *
103822040 TTTTATTTATTATTTATTGTTTA
1 TTTTGTATATTATTTATTGTTAA
103822063 TTTTG
1 TTTTG
103822068 AACCCCTTTT
Statistics
Matches: 22, Mismatches: 5, Indels: 1
0.79 0.18 0.04
Matches are distributed among these distances:
22 13 0.59
23 9 0.41
ACGTcount: A:0.20, C:0.02, G:0.08, T:0.70
Consensus pattern (23 bp):
TTTTGTATATTATTTATTGTTAA
Found at i:103826183 original size:28 final size:29
Alignment explanation
Indices: 103826150--103826223 Score: 103
Period size: 31 Copynumber: 2.4 Consensus size: 29
103826140 GAAGAGAAAA
*
103826150 AAAGAAATTATATGTCGGTATGGAGTGCC
1 AAAGAAATCATATGTCGGTATGGAGTGCC
103826179 AAGAAGAAATCATATGTCGGTATGGAGTGCC
1 -A-AAGAAATCATATGTCGGTATGGAGTGCC
*
103826210 AAAGAGGATCATAT
1 AAAGA-AATCATAT
103826224 ATTACAATGC
Statistics
Matches: 40, Mismatches: 2, Indels: 4
0.87 0.04 0.09
Matches are distributed among these distances:
29 4 0.10
30 9 0.22
31 27 0.68
ACGTcount: A:0.38, C:0.11, G:0.27, T:0.24
Consensus pattern (29 bp):
AAAGAAATCATATGTCGGTATGGAGTGCC
Found at i:103826223 original size:30 final size:31
Alignment explanation
Indices: 103826151--103826211 Score: 113
Period size: 31 Copynumber: 2.0 Consensus size: 31
103826141 AAGAGAAAAA
*
103826151 AAGAAATTATATGTCGGTATGGAGTGCCAAG
1 AAGAAATCATATGTCGGTATGGAGTGCCAAG
103826182 AAGAAATCATATGTCGGTATGGAGTGCCAA
1 AAGAAATCATATGTCGGTATGGAGTGCCAA
103826212 AGAGGATCAT
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.36, C:0.11, G:0.28, T:0.25
Consensus pattern (31 bp):
AAGAAATCATATGTCGGTATGGAGTGCCAAG
Found at i:103826875 original size:14 final size:14
Alignment explanation
Indices: 103826863--103826908 Score: 51
Period size: 14 Copynumber: 3.4 Consensus size: 14
103826853 TAAAAAAAAG
*
103826863 AAAAAATAAAAA-A
1 AAAAAACAAAAACA
103826876 ACAAAAACAAAAAC-
1 A-AAAAACAAAAACA
*
103826890 AAAAAACAAACACA
1 AAAAAACAAAAACA
103826904 AAAAA
1 AAAAA
103826909 GAAAAGAAAA
Statistics
Matches: 28, Mismatches: 2, Indels: 5
0.80 0.06 0.14
Matches are distributed among these distances:
13 12 0.43
14 16 0.57
ACGTcount: A:0.85, C:0.13, G:0.00, T:0.02
Consensus pattern (14 bp):
AAAAAACAAAAACA
Found at i:103826881 original size:6 final size:6
Alignment explanation
Indices: 103826872--103826907 Score: 54
Period size: 6 Copynumber: 5.8 Consensus size: 6
103826862 GAAAAAATAA
*
103826872 AAAAAC AAAAAC AAAAAC AAAAAAC AAACAC AAAAA
1 AAAAAC AAAAAC AAAAAC -AAAAAC AAAAAC AAAAA
103826908 AGAAAAGAAA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
6 21 0.78
7 6 0.22
ACGTcount: A:0.83, C:0.17, G:0.00, T:0.00
Consensus pattern (6 bp):
AAAAAC
Found at i:103826881 original size:13 final size:12
Alignment explanation
Indices: 103826854--103826920 Score: 64
Period size: 12 Copynumber: 5.5 Consensus size: 12
103826844 ATTTCACTTT
103826854 AAAAAAAAGAAA-
1 AAAAAAAA-AAAC
*
103826866 AAATAAAAAAAC
1 AAAAAAAAAAAC
*
103826878 AAAAACAAAAAC
1 AAAAAAAAAAAC
*
103826890 AAAAAACAAACAC
1 AAAAAA-AAAAAC
* *
103826903 AAAAAAGAAAAG
1 AAAAAAAAAAAC
103826915 AAAAAA
1 AAAAAA
103826921 GAGAGGCCAA
Statistics
Matches: 45, Mismatches: 8, Indels: 4
0.79 0.14 0.07
Matches are distributed among these distances:
11 3 0.07
12 31 0.69
13 11 0.24
ACGTcount: A:0.85, C:0.09, G:0.04, T:0.01
Consensus pattern (12 bp):
AAAAAAAAAAAC
Found at i:103827475 original size:65 final size:65
Alignment explanation
Indices: 103827369--103827492 Score: 203
Period size: 65 Copynumber: 1.9 Consensus size: 65
103827359 TTTAGCAAAG
* * * * *
103827369 TTTGCTATCTTTGATTAATTTATTCGTTTCGAGCTATGCTCTCAATCAATTTCTTTCTTATTGTA
1 TTTGCCATCTTTGATTAACTTATTCGTCTCGAGCTACGCTCTCAATCAATTTCCTTCTTATTGTA
103827434 TTTGCCATCTTTGATTAACTTATTCGTCTCGAGCTACGCTCTCAATCAATTTCCTTCTT
1 TTTGCCATCTTTGATTAACTTATTCGTCTCGAGCTACGCTCTCAATCAATTTCCTTCTT
103827493 GTCCATCATT
Statistics
Matches: 54, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
65 54 1.00
ACGTcount: A:0.19, C:0.22, G:0.10, T:0.48
Consensus pattern (65 bp):
TTTGCCATCTTTGATTAACTTATTCGTCTCGAGCTACGCTCTCAATCAATTTCCTTCTTATTGTA
Found at i:103828202 original size:99 final size:99
Alignment explanation
Indices: 103828028--103828307 Score: 316
Period size: 99 Copynumber: 2.8 Consensus size: 99
103828018 TGAAGTTGTA
* ** **
103828028 GATCTTATCTTCTTGAAGTTGCTGTGGAGCAGATCGAAGACAGTGAATCTTATTTCCCTGAAGTT
1 GATCTTATCTTCTTGAAGTTGCAGCAGAGCAGATCGAAGACAACGAATCTTATTTCCCTGAAGTT
* *
103828093 GCAGTAGAATAGATTGAAGCTACAAATTATGGT-G
66 ACAGTAGAATAGATTGAAACTACAAATTAT-GTCG
*
103828127 GATCTTATCTTCCTGAAGTTGCAGCAGAGCAGA-CTGAAGACAACGAATCTTATTTCCCTGAAGT
1 GATCTTATCTTCTTGAAGTTGCAGCAGAGCAGATC-GAAGACAACGAATCTTATTTCCCTGAAGT
*
103828191 TACAGTGGAATAGATTGAAACTACAAATTATGTCG
65 TACAGTAGAATAGATTGAAACTACAAATTATGTCG
* * * * * * ** *
103828226 AATCTTATCTTCTTGAAGTTACAG-TGAAGCAGATTGAAG-CCACCAGCCTTATCTCCCTGAAGT
1 GATCTTATCTTCTTGAAGTTGCAGCAG-AGCAGATCGAAGACAACGAATCTTATTTCCCTGAAGT
* * *
103828289 TGCAGTAGAGTAGACTGAA
65 TACAGTAGAATAGATTGAA
103828308 GACAGCGAAT
Statistics
Matches: 154, Mismatches: 23, Indels: 9
0.83 0.12 0.05
Matches are distributed among these distances:
98 38 0.25
99 116 0.75
ACGTcount: A:0.31, C:0.17, G:0.22, T:0.30
Consensus pattern (99 bp):
GATCTTATCTTCTTGAAGTTGCAGCAGAGCAGATCGAAGACAACGAATCTTATTTCCCTGAAGTT
ACAGTAGAATAGATTGAAACTACAAATTATGTCG
Found at i:103828452 original size:44 final size:45
Alignment explanation
Indices: 103828395--103828482 Score: 106
Period size: 45 Copynumber: 2.0 Consensus size: 45
103828385 AAGTTGTAAT
* *
103828395 GGAGCAAATTGAAGCCA-CCAACCTTATCTCCCTAAAGTTGCAGC
1 GGAGCAAACTGAAGACAGCCAACCTTATCTCCCTAAAGTTGCAGC
* * * * *
103828439 GGAGTAAACTGAAGACAGCGAATCTTATTTCCCTGAAGTTGCAG
1 GGAGCAAACTGAAGACAGCCAACCTTATCTCCCTAAAGTTGCAG
103828483 TGGAACAGAT
Statistics
Matches: 36, Mismatches: 7, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
44 14 0.39
45 22 0.61
ACGTcount: A:0.32, C:0.24, G:0.22, T:0.23
Consensus pattern (45 bp):
GGAGCAAACTGAAGACAGCCAACCTTATCTCCCTAAAGTTGCAGC
Found at i:103828455 original size:144 final size:143
Alignment explanation
Indices: 103828130--103828885 Score: 989
Period size: 143 Copynumber: 5.3 Consensus size: 143
103828120 TATGGTGGAT
* * * *
103828130 CTTATCTTCCTGAAGTTGCAGCAGAGCAGACTGAAGACAACGAATCTTATTTCCCTGAAGTTACA
1 CTTATCTCCCTGAAGTTGCAGCAGAGTAGACTGAAGACAGCGAATCTTATTTCCCTGAAGTTGCA
* * * * *
103828195 GTGGAATAGATTGAAACTACAAATTATGTCGAATCTTATCTTCTTGAAGTTACAGTGAAGCAGAT
66 GTGGAACAGATTGAAGCTACAAATTATGGCGAATCTTATCTTCTTGAAGTTGCAGTGGAGCAGAT
103828260 TGAAGCCACCAGC
131 TGAAGCCACCAGC
* ** *
103828273 CTTATCTCCCTGAAGTTGCAGTAGAGTAGACTGAAGACAGCGAATCTTATTTATCTGAAGTTGTT
1 CTTATCTCCCTGAAGTTGCAGCAGAGTAGACTGAAGACAGCGAATCTTATTTCCCTGAAGTTG-C
* * *
103828338 A-TGGAACAGATTGAAGCTAAAAATTATGGC-AGATCTTATCTTCTTGGAAGTTGTAATGGAGCA
65 AGTGGAACAGATTGAAGCTACAAATTATGGCGA-ATCTTATCTTCTT-GAAGTTGCAGTGGAGCA
* *
103828401 AATTGAAGCCACCAAC
128 GATTGAAGCCACCAGC
* * *
103828417 CTTATCTCCCTAAAGTTGCAGCGGAGTAAACTGAAGACAGCGAATCTTATTTCCCTGAAGTTGCA
1 CTTATCTCCCTGAAGTTGCAGCAGAGTAGACTGAAGACAGCGAATCTTATTTCCCTGAAGTTGCA
* * *
103828482 GTGGAACAGATTGAAACTACAAATTATGGCGAATCTTATCTTCTTGAAGTTACAGTGAAGCAGAT
66 GTGGAACAGATTGAAGCTACAAATTATGGCGAATCTTATCTTCTTGAAGTTGCAGTGGAGCAGAT
*
103828547 TGAAGCTACCAGC
131 TGAAGCCACCAGC
* * * * *
103828560 CTTATCTCCCTGAAGTTGCAGTAGAGTAGACTAAAGACAGCAAATCTTATTTCTCTGAAGTTGCT
1 CTTATCTCCCTGAAGTTGCAGCAGAGTAGACTGAAGACAGCGAATCTTATTTCCCTGAAGTTGCA
*
103828625 GTGGAACAGATTGAAGCTACAAATTATGGC-AGATCTTATCTTCTTGGAAGTTGTAGTGGAGCAG
66 GTGGAACAGATTGAAGCTACAAATTATGGCGA-ATCTTATCTTCTT-GAAGTTGCAGTGGAGCAG
103828689 ATTGAAGCCACCAGC
129 ATTGAAGCCACCAGC
* ** * * *
103828704 CTTATCTCCCTGAAGTTGCAGCGGAACAGACTGAAGACAGCAAATCCTATTTCCCTGAGGTTGCA
1 CTTATCTCCCTGAAGTTGCAGCAGAGTAGACTGAAGACAGCGAATCTTATTTCCCTGAAGTTGCA
* ** * * * *
103828769 GTGGAACATATT-AACGCTATGAATTATGACGAATCTTATGTTCTTGAAGTTGCAGTGGAACAAA
66 GTGGAACAGATTGAA-GCTACAAATTATGGCGAATCTTATCTTCTTGAAGTTGCAGTGGAGCAGA
103828833 TTGAAGCCACCAGC
130 TTGAAGCCACCAGC
* * * * *
103828847 CTTATCTCCCTAAAATTGTAGCAGAGCAGATTGAAGACA
1 CTTATCTCCCTGAAGTTGCAGCAGAGTAGACTGAAGACA
103828886 ACAAATCCCA
Statistics
Matches: 534, Mismatches: 70, Indels: 18
0.86 0.11 0.03
Matches are distributed among these distances:
142 2 0.00
143 285 0.53
144 245 0.46
145 2 0.00
ACGTcount: A:0.32, C:0.19, G:0.21, T:0.28
Consensus pattern (143 bp):
CTTATCTCCCTGAAGTTGCAGCAGAGTAGACTGAAGACAGCGAATCTTATTTCCCTGAAGTTGCA
GTGGAACAGATTGAAGCTACAAATTATGGCGAATCTTATCTTCTTGAAGTTGCAGTGGAGCAGAT
TGAAGCCACCAGC
Found at i:103828545 original size:287 final size:287
Alignment explanation
Indices: 103828130--103828892 Score: 1152
Period size: 287 Copynumber: 2.7 Consensus size: 287
103828120 TATGGTGGAT
* * * *
103828130 CTTATCTTCCTGAAGTTGCAGCAGAGCAGACTGAAGACAACGAATCTTATTTCCCTGAAGTTACA
1 CTTATCTCCCTGAAGTTGCAGCGGAGCAGACTGAAGACAGCGAATCTTATTTCCCTGAAGTTGCA
* *
103828195 GTGGAATAGATTGAAACTACAAATTATGTCGAATCTTATCTTCTTGAAGTTACAGTGAAGCAGAT
66 GTGGAACAGATTGAAACTACAAATTATGACGAATCTTATCTTCTTGAAGTTACAGTGAAGCAGAT
*
103828260 TGAAGCCACCAGCCTTATCTCCCTGAAGTTGCAGTAGAGTAGACTGAAGACAGCGAATCTTATTT
131 TGAAGCCACCAGCCTTATCTCCCTGAAGTTGCAGTAGAGTAGACTGAAGACAGCAAATCTTATTT
*
103828325 ATCTGAAGTTGTTATGGAACAGATTGAAGCTAAAAATTATGGCAGATCTTATCTTCTTGGAAGTT
196 ATCTGAAGTTGCTATGGAACAGATTGAAGCTAAAAATTATGGCAGATCTTATCTTCTTGGAAGTT
103828390 GTAATGGAGCAAATTGAAGCCACCAAC
261 GTAATGGAGCAAATTGAAGCCACCAAC
* * *
103828417 CTTATCTCCCTAAAGTTGCAGCGGAGTAAACTGAAGACAGCGAATCTTATTTCCCTGAAGTTGCA
1 CTTATCTCCCTGAAGTTGCAGCGGAGCAGACTGAAGACAGCGAATCTTATTTCCCTGAAGTTGCA
*
103828482 GTGGAACAGATTGAAACTACAAATTATGGCGAATCTTATCTTCTTGAAGTTACAGTGAAGCAGAT
66 GTGGAACAGATTGAAACTACAAATTATGACGAATCTTATCTTCTTGAAGTTACAGTGAAGCAGAT
* *
103828547 TGAAGCTACCAGCCTTATCTCCCTGAAGTTGCAGTAGAGTAGACTAAAGACAGCAAATCTTATTT
131 TGAAGCCACCAGCCTTATCTCCCTGAAGTTGCAGTAGAGTAGACTGAAGACAGCAAATCTTATTT
* * *
103828612 CTCTGAAGTTGCTGTGGAACAGATTGAAGCTACAAATTATGGCAGATCTTATCTTCTTGGAAGTT
196 ATCTGAAGTTGCTATGGAACAGATTGAAGCTAAAAATTATGGCAGATCTTATCTTCTTGGAAGTT
* * *
103828677 GTAGTGGAGCAGATTGAAGCCACCAGC
261 GTAATGGAGCAAATTGAAGCCACCAAC
* * * *
103828704 CTTATCTCCCTGAAGTTGCAGCGGAACAGACTGAAGACAGCAAATCCTATTTCCCTGAGGTTGCA
1 CTTATCTCCCTGAAGTTGCAGCGGAGCAGACTGAAGACAGCGAATCTTATTTCCCTGAAGTTGCA
* * ** * * *
103828769 GTGGAACATATT-AACGCTATGAATTATGACGAATCTTATGTTCTTGAAGTTGCAGTGGAA-CAA
66 GTGGAACAGATTGAA-ACTACAAATTATGACGAATCTTATCTTCTTGAAGTTACAGT-GAAGCAG
* * * * * * *
103828832 ATTGAAGCCACCAGCCTTATCTCCCTAAAATTGTAGCAGAGCAGATTGAAGACAACAAATC
129 ATTGAAGCCACCAGCCTTATCTCCCTGAAGTTGCAGTAGAGTAGACTGAAGACAGCAAATC
103828893 CCATCCCCTT
Statistics
Matches: 431, Mismatches: 43, Indels: 4
0.90 0.09 0.01
Matches are distributed among these distances:
286 2 0.00
287 426 0.99
288 3 0.01
ACGTcount: A:0.32, C:0.19, G:0.21, T:0.28
Consensus pattern (287 bp):
CTTATCTCCCTGAAGTTGCAGCGGAGCAGACTGAAGACAGCGAATCTTATTTCCCTGAAGTTGCA
GTGGAACAGATTGAAACTACAAATTATGACGAATCTTATCTTCTTGAAGTTACAGTGAAGCAGAT
TGAAGCCACCAGCCTTATCTCCCTGAAGTTGCAGTAGAGTAGACTGAAGACAGCAAATCTTATTT
ATCTGAAGTTGCTATGGAACAGATTGAAGCTAAAAATTATGGCAGATCTTATCTTCTTGGAAGTT
GTAATGGAGCAAATTGAAGCCACCAAC
Found at i:103830548 original size:25 final size:25
Alignment explanation
Indices: 103830479--103830549 Score: 60
Period size: 25 Copynumber: 2.8 Consensus size: 25
103830469 ATTTGTTATT
*
103830479 TATTTT-TTTATTATTCATTTTAATAG
1 TATTTTATTTATT-TT-ATTTTAATAC
103830505 T-TTTATATGTTA-TTTATTTTAA-AC
1 TATTT-TAT-TTATTTTATTTTAATAC
103830529 TATTTTATTTATTTTAATTTT
1 TATTTTATTTATTTT-ATTTT
103830550 TTATATATTA
Statistics
Matches: 38, Mismatches: 1, Indels: 13
0.73 0.02 0.25
Matches are distributed among these distances:
23 3 0.08
24 8 0.21
25 18 0.47
26 4 0.11
27 2 0.05
28 3 0.08
ACGTcount: A:0.27, C:0.03, G:0.03, T:0.68
Consensus pattern (25 bp):
TATTTTATTTATTTTATTTTAATAC
Found at i:103830570 original size:43 final size:44
Alignment explanation
Indices: 103830489--103830578 Score: 128
Period size: 43 Copynumber: 2.1 Consensus size: 44
103830479 TATTTTTTTA
* *
103830489 TTATTCATTTTAATAGTTTTATATGTTATTTATTTTAAACTATT
1 TTATTCATTTTAATAGTTTTATATATTATTTATATTAAACTATT
* * *
103830533 TTATTTATTTTAAT-TTTTTATATATTATTTATATTAAACTGTT
1 TTATTCATTTTAATAGTTTTATATATTATTTATATTAAACTATT
103830576 TTA
1 TTA
103830579 GATATTATTT
Statistics
Matches: 41, Mismatches: 5, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
43 28 0.68
44 13 0.32
ACGTcount: A:0.30, C:0.03, G:0.03, T:0.63
Consensus pattern (44 bp):
TTATTCATTTTAATAGTTTTATATATTATTTATATTAAACTATT
Found at i:103830669 original size:30 final size:26
Alignment explanation
Indices: 103830533--103830781 Score: 200
Period size: 26 Copynumber: 9.5 Consensus size: 26
103830523 TTAAACTATT
*
103830533 TTATTTATTTT-AA-TTTTTTATATA
1 TTATTTATTTTAAACTGTTTTATATA
* *
103830557 TTATTTATATTAAACTGTTTTAGATA
1 TTATTTATTTTAAACTGTTTTATATA
* *
103830583 TTATTTATTTTAAATTGTTTCATATA
1 TTATTTATTTTAAACTGTTTTATATA
* * *
103830609 TTATTTATTTTGAACTGCTTTATACA
1 TTATTTATTTTAAACTGTTTTATATA
103830635 TTATTTTATTTTAAAACTGTTTCATATATA
1 TTA-TTTATTTT-AAACTGTTT--TATATA
* * * *
103830665 TTATTTATTTTAGATTTTTTTACATA
1 TTATTTATTTTAAACTGTTTTATATA
* * * *
103830691 TTATTTCCTTTAAAAAATGATTTATATA
1 TTATTT-ATTT-TAAACTGTTTTATATA
* * *
103830719 TTATTTATTTTAAATTG-CTT-TAGA
1 TTATTTATTTTAAACTGTTTTATATA
** * *
103830743 TTATTTATTGCAAACTGTTTTGTATT
1 TTATTTATTTTAAACTGTTTTATATA
*
103830769 TTATTTATGTTAA
1 TTATTTATTTTAA
103830782 TTTTATTTAT
Statistics
Matches: 175, Mismatches: 40, Indels: 18
0.75 0.17 0.08
Matches are distributed among these distances:
24 27 0.15
25 6 0.03
26 83 0.47
27 14 0.08
28 29 0.17
29 8 0.05
30 8 0.05
ACGTcount: A:0.31, C:0.05, G:0.06, T:0.59
Consensus pattern (26 bp):
TTATTTATTTTAAACTGTTTTATATA
Found at i:103830689 original size:54 final size:53
Alignment explanation
Indices: 103830582--103830748 Score: 137
Period size: 54 Copynumber: 3.1 Consensus size: 53
103830572 TGTTTTAGAT
* * *
103830582 ATTA-TTTATTTT-AAATTGTTTC-ATATATTATTTATTTT-GAACTGCTTTATAC
1 ATTATTTTATTTTAAAAATGTTTCTATATATTATTTATTTTAG-A-T-TTTTTTAC
*
103830634 ATTATTTTATTTTAAAACTGTTTCATATATATTATTTATTTTAGATTTTTTTAC
1 ATTATTTTATTTTAAAAATGTTTC-TATATATTATTTATTTTAGATTTTTTTAC
** * * * ** *
103830688 ATATTATTTCCTTTAAAAAATGATT-TATATATTATTTATTTTAAATTGCTTTAG
1 --ATTATTTTATTTTAAAAATGTTTCTATATATTATTTATTTTAGATTTTTTTAC
103830742 ATTATTT
1 ATTATTT
103830749 ATTGCAAACT
Statistics
Matches: 96, Mismatches: 12, Indels: 14
0.79 0.10 0.11
Matches are distributed among these distances:
52 11 0.11
53 8 0.08
54 40 0.42
55 1 0.01
56 35 0.36
57 1 0.01
ACGTcount: A:0.31, C:0.06, G:0.05, T:0.58
Consensus pattern (53 bp):
ATTATTTTATTTTAAAAATGTTTCTATATATTATTTATTTTAGATTTTTTTAC
Found at i:103830796 original size:7 final size:7
Alignment explanation
Indices: 103830784--103830813 Score: 51
Period size: 7 Copynumber: 4.3 Consensus size: 7
103830774 TATGTTAATT
103830784 TTATTTA
1 TTATTTA
103830791 TTATTTA
1 TTATTTA
*
103830798 TTAATTA
1 TTATTTA
103830805 TTATTTA
1 TTATTTA
103830812 TT
1 TT
103830814 TTGAACCCCT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
7 21 1.00
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (7 bp):
TTATTTA
Found at i:103830884 original size:25 final size:26
Alignment explanation
Indices: 103830850--103830913 Score: 85
Period size: 25 Copynumber: 2.5 Consensus size: 26
103830840 TTAAAAAAAA
*
103830850 TTATATATTATTTATTTCAAACT-TT
1 TTATATATTATTTACTTCAAACTGTT
* * *
103830875 TTATAAATTATTTACTTCGAATTGTT
1 TTATATATTATTTACTTCAAACTGTT
103830901 TTATATATTATTT
1 TTATATATTATTT
103830914 TGTTTCATTT
Statistics
Matches: 33, Mismatches: 5, Indels: 1
0.85 0.13 0.03
Matches are distributed among these distances:
25 19 0.58
26 14 0.42
ACGTcount: A:0.31, C:0.06, G:0.03, T:0.59
Consensus pattern (26 bp):
TTATATATTATTTACTTCAAACTGTT
Found at i:103832808 original size:24 final size:24
Alignment explanation
Indices: 103832764--103832809 Score: 58
Period size: 23 Copynumber: 1.9 Consensus size: 24
103832754 TTATTTTAAA
*
103832764 ATAATAATAAAATAGTTATTACAC
1 ATAATAATAAAATAGTAATTACAC
*
103832788 ATAA-AATTAAATAGTAAATTAC
1 ATAATAATAAAATAGT-AATTAC
103832810 TTTTTCGACT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 10 0.53
24 9 0.47
ACGTcount: A:0.57, C:0.07, G:0.04, T:0.33
Consensus pattern (24 bp):
ATAATAATAAAATAGTAATTACAC
Found at i:103836439 original size:30 final size:29
Alignment explanation
Indices: 103836387--103836444 Score: 82
Period size: 30 Copynumber: 2.0 Consensus size: 29
103836377 ACAAATTAGA
*
103836387 TTTTTTTTGTAAATTAATATAATTTTATG
1 TTTTTTTTATAAATTAATATAATTTTATG
103836416 TTTTCTTTTATAATATTAA-ATAATTTTAT
1 TTTT-TTTTATAA-ATTAATATAATTTTAT
103836445 ACATATTTTT
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
29 4 0.15
30 17 0.65
31 5 0.19
ACGTcount: A:0.33, C:0.02, G:0.03, T:0.62
Consensus pattern (29 bp):
TTTTTTTTATAAATTAATATAATTTTATG
Found at i:103848573 original size:65 final size:65
Alignment explanation
Indices: 103848499--103848626 Score: 238
Period size: 65 Copynumber: 2.0 Consensus size: 65
103848489 TTTCTTAGAC
*
103848499 GGAAATTCACATTTTTATATTAATGCTATAGAAAACAGTTAGGTTAAATAGGCATATTAAAAGTG
1 GGAAATTCACATTTTTATATTAATGCAATAGAAAACAGTTAGGTTAAATAGGCATATTAAAAGTG
*
103848564 GGAAATTCACGTTTTTATATTAATGCAATAGAAAACAGTTAGGTTAAATAGGCATATTAAAAG
1 GGAAATTCACATTTTTATATTAATGCAATAGAAAACAGTTAGGTTAAATAGGCATATTAAAAG
103848627 AGGAGAAAAT
Statistics
Matches: 61, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
65 61 1.00
ACGTcount: A:0.42, C:0.08, G:0.17, T:0.33
Consensus pattern (65 bp):
GGAAATTCACATTTTTATATTAATGCAATAGAAAACAGTTAGGTTAAATAGGCATATTAAAAGTG
Found at i:103855526 original size:26 final size:27
Alignment explanation
Indices: 103855476--103855535 Score: 72
Period size: 26 Copynumber: 2.3 Consensus size: 27
103855466 GGAAAAGTTT
103855476 TAATTTAATTTAATTTGATT-TTTTTA
1 TAATTTAATTTAATTTGATTCTTTTTA
*
103855502 TAATTTAATTCT-ATTCT-ATTCTTTTTT
1 TAATTTAATT-TAATT-TGATTCTTTTTA
103855529 TAATTTA
1 TAATTTA
103855536 GTTTTGTTTT
Statistics
Matches: 30, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
26 16 0.53
27 14 0.47
ACGTcount: A:0.28, C:0.05, G:0.02, T:0.65
Consensus pattern (27 bp):
TAATTTAATTTAATTTGATTCTTTTTA
Found at i:103859039 original size:2 final size:2
Alignment explanation
Indices: 103859032--103859056 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
103859022 TTAGGCAATT
103859032 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
103859057 GTATTTTTAC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:103860346 original size:17 final size:18
Alignment explanation
Indices: 103860316--103860349 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
103860306 AGAAAATAAT
103860316 AAAAAGGTTGTTTTTAAG
1 AAAAAGGTTGTTTTTAAG
*
103860334 AAAAATGTT-TTTTTAA
1 AAAAAGGTTGTTTTTAA
103860350 AATTGAAAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 7 0.47
18 8 0.53
ACGTcount: A:0.41, C:0.00, G:0.15, T:0.44
Consensus pattern (18 bp):
AAAAAGGTTGTTTTTAAG
Found at i:103862555 original size:18 final size:19
Alignment explanation
Indices: 103862532--103862567 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
103862522 TGATTTTGGT
*
103862532 TTTCATTTTTTAT-TAGGA
1 TTTCATTTATTATCTAGGA
103862550 TTTCATTTATTATCTAGG
1 TTTCATTTATTATCTAGG
103862568 TTGTCTCTGC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 12 0.75
19 4 0.25
ACGTcount: A:0.22, C:0.08, G:0.11, T:0.58
Consensus pattern (19 bp):
TTTCATTTATTATCTAGGA
Found at i:103863398 original size:24 final size:24
Alignment explanation
Indices: 103863371--103863420 Score: 100
Period size: 24 Copynumber: 2.1 Consensus size: 24
103863361 AATACAAATG
103863371 ACATAATAGTGAAATGAGAAATTA
1 ACATAATAGTGAAATGAGAAATTA
103863395 ACATAATAGTGAAATGAGAAATTA
1 ACATAATAGTGAAATGAGAAATTA
103863419 AC
1 AC
103863421 TTTATTTATT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.54, C:0.06, G:0.16, T:0.24
Consensus pattern (24 bp):
ACATAATAGTGAAATGAGAAATTA
Found at i:103870197 original size:28 final size:28
Alignment explanation
Indices: 103870166--103870222 Score: 96
Period size: 28 Copynumber: 2.0 Consensus size: 28
103870156 TTTTTGATGT
* *
103870166 ATTTTATATTTTTTATGATTTTTATAAA
1 ATTTTATATTTTTTATAATTTCTATAAA
103870194 ATTTTATATTTTTTATAATTTCTATAAA
1 ATTTTATATTTTTTATAATTTCTATAAA
103870222 A
1 A
103870223 AATTTCTAAT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
28 27 1.00
ACGTcount: A:0.35, C:0.02, G:0.02, T:0.61
Consensus pattern (28 bp):
ATTTTATATTTTTTATAATTTCTATAAA
Found at i:103870219 original size:18 final size:17
Alignment explanation
Indices: 103870176--103870219 Score: 52
Period size: 18 Copynumber: 2.4 Consensus size: 17
103870166 ATTTTATATT
*
103870176 TTTTATGATTTTTATAAAA
1 TTTTAT-ATTTTT-TATAA
103870195 TTTTATATTTTTTATAA
1 TTTTATATTTTTTATAA
103870212 TTTCTATA
1 TTT-TATA
103870220 AAAAATTTCT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
17 7 0.30
18 10 0.43
19 6 0.26
ACGTcount: A:0.32, C:0.02, G:0.02, T:0.64
Consensus pattern (17 bp):
TTTTATATTTTTTATAA
Found at i:103870249 original size:28 final size:30
Alignment explanation
Indices: 103870218--103870296 Score: 74
Period size: 27 Copynumber: 2.7 Consensus size: 30
103870208 ATAATTTCTA
*
103870218 TAAAAAATTTCTA-ATTTTTAA-TGAAATT
1 TAAAAAATTTCTATATTTTTAATTAAAATT
* *
103870246 T-AAATATTTTTATATTTTTAATTAAAATT
1 TAAAAAATTTCTATATTTTTAATTAAAATT
* * *
103870275 TAATAATTTTTTATAATTTTTA
1 TAAAAAATTTCTAT-ATTTTTA
103870297 TTGATATTTT
Statistics
Matches: 41, Mismatches: 6, Indels: 5
0.79 0.12 0.10
Matches are distributed among these distances:
27 9 0.22
28 9 0.22
29 7 0.17
30 9 0.22
31 7 0.17
ACGTcount: A:0.42, C:0.01, G:0.01, T:0.56
Consensus pattern (30 bp):
TAAAAAATTTCTATATTTTTAATTAAAATT
Found at i:103870308 original size:31 final size:31
Alignment explanation
Indices: 103870229--103870317 Score: 105
Period size: 31 Copynumber: 3.0 Consensus size: 31
103870219 AAAAAATTTC
* *
103870229 TAATTTTTAATGAAATTTAAAT-A-TTTTTA
1 TAATTTTTATTGAAATTTTAATAATTTTTTA
*
103870258 T-ATTTTTAATT-AAAATTTAATAATTTTTTA
1 TAATTTTT-ATTGAAATTTTAATAATTTTTTA
*
103870288 TAATTTTTATTGATATTTTAATAATTTTTT
1 TAATTTTTATTGAAATTTTAATAATTTTTT
103870318 TGCCACATGT
Statistics
Matches: 50, Mismatches: 5, Indels: 8
0.79 0.08 0.13
Matches are distributed among these distances:
28 14 0.28
29 4 0.08
30 10 0.20
31 22 0.44
ACGTcount: A:0.37, C:0.00, G:0.02, T:0.61
Consensus pattern (31 bp):
TAATTTTTATTGAAATTTTAATAATTTTTTA
Found at i:103874240 original size:14 final size:15
Alignment explanation
Indices: 103874216--103874244 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
103874206 TTTGAGCATG
103874216 TTTTTGCTTCTTCAT
1 TTTTTGCTTCTTCAT
103874231 TTTTTG-TTCTTCAT
1 TTTTTGCTTCTTCAT
103874245 CCTGATGTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 8 0.57
15 6 0.43
ACGTcount: A:0.07, C:0.17, G:0.07, T:0.69
Consensus pattern (15 bp):
TTTTTGCTTCTTCAT
Found at i:103883612 original size:16 final size:16
Alignment explanation
Indices: 103883591--103883658 Score: 102
Period size: 16 Copynumber: 4.2 Consensus size: 16
103883581 TTTGGTTCGC
103883591 TGTATTGGATTAGAGA
1 TGTATTGGATTAGAGA
103883607 TGTATTGGATTAGA-A
1 TGTATTGGATTAGAGA
*
103883622 GTGTATTGGATTAGAGG
1 -TGTATTGGATTAGAGA
*
103883639 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGA
103883655 TGTA
1 TGTA
103883659 ATAGCAAATC
Statistics
Matches: 49, Mismatches: 1, Indels: 4
0.91 0.02 0.07
Matches are distributed among these distances:
15 1 0.02
16 48 0.98
ACGTcount: A:0.28, C:0.00, G:0.34, T:0.38
Consensus pattern (16 bp):
TGTATTGGATTAGAGA
Found at i:103883630 original size:32 final size:32
Alignment explanation
Indices: 103883591--103883658 Score: 118
Period size: 32 Copynumber: 2.1 Consensus size: 32
103883581 TTTGGTTCGC
103883591 TGTATTGGATTAGAGATGTATTGGATTAGAAG
1 TGTATTGGATTAGAGATGTATTGGATTAGAAG
* *
103883623 TGTATTGGATTAGAGGTGTATTGGATTAGAGG
1 TGTATTGGATTAGAGATGTATTGGATTAGAAG
103883655 TGTA
1 TGTA
103883659 ATAGCAAATC
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
32 34 1.00
ACGTcount: A:0.28, C:0.00, G:0.34, T:0.38
Consensus pattern (32 bp):
TGTATTGGATTAGAGATGTATTGGATTAGAAG
Found at i:103883982 original size:157 final size:157
Alignment explanation
Indices: 103883788--103884097 Score: 521
Period size: 157 Copynumber: 2.0 Consensus size: 157
103883778 CCCTTAGCAT
*
103883788 AAATTTATTTTGGTAAATGATTATTGTTATTGTTATTTAAATTTTAATAAGATTATTATTATCAA
1 AAATTTATTTTGGTAAATGATTATTGTTATTGTTATTTAAATTTTAATAAGATTATTAATATCAA
* * *
103883853 TAATAAATATTTTAATCATGTTTAAACATAATTATTATTAAACATATTTTAATTAAAATATATAA
66 TAATAAATAATTTAATCATATTTAAACATAATTATTATTAAACATATTATAATTAAAATATATAA
103883918 TTTAATAAAATTCTTAATAATTACCAG
131 TTTAATAAAATTCTTAATAATTACCAG
* * * *
103883945 AAATTTGTTTTGGTAAATTATTATTGTTATTGTTATTTAAATTTTGATAAGATTATTAATATGAA
1 AAATTTATTTTGGTAAATGATTATTGTTATTGTTATTTAAATTTTAATAAGATTATTAATATCAA
* *
103884010 TAATAAATAATTTAATCATATTTAAACATAATTATTATTAAATATATTATACTTAAAATATATAA
66 TAATAAATAATTTAATCATATTTAAACATAATTATTATTAAACATATTATAATTAAAATATATAA
*
103884075 TTTAATAAAATTTTTAATAATTA
131 TTTAATAAAATTCTTAATAATTA
103884098 ATATTCTTAT
Statistics
Matches: 142, Mismatches: 11, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
157 142 1.00
ACGTcount: A:0.44, C:0.03, G:0.05, T:0.48
Consensus pattern (157 bp):
AAATTTATTTTGGTAAATGATTATTGTTATTGTTATTTAAATTTTAATAAGATTATTAATATCAA
TAATAAATAATTTAATCATATTTAAACATAATTATTATTAAACATATTATAATTAAAATATATAA
TTTAATAAAATTCTTAATAATTACCAG
Found at i:103904731 original size:64 final size:64
Alignment explanation
Indices: 103904556--103904733 Score: 193
Period size: 64 Copynumber: 2.8 Consensus size: 64
103904546 GTGTGGTCTC
* * * ** *
103904556 CCCGTGTGATC-CTAAATCACAAACAGTAAGGCACAC-GACCTGG--ACACGTGCTTGTGTCTTT
1 CCCGTGTGGTCTCTAAATCACAAACAATAAGTCACACAG-CCTGGACACACGT-C-AATGTCTCT
103904617 GG
63 GG
* * * *
103904619 CCTGTGTGGTCTCTAAATCACAAACAGTTAGTCACATAGCCTGGACACACGTCAATGTCTCTGG
1 CCCGTGTGGTCTCTAAATCACAAACAATAAGTCACACAGCCTGGACACACGTCAATGTCTCTGG
* *
103904683 CCCGTGTGGTCTTTAAATCACAAATAATAAGTCACACAGCCTGGACACACG
1 CCCGTGTGGTCTCTAAATCACAAACAATAAGTCACACAGCCTGGACACACG
103904734 CCCGTGTCCT
Statistics
Matches: 97, Mismatches: 14, Indels: 7
0.82 0.12 0.06
Matches are distributed among these distances:
63 9 0.09
64 80 0.82
65 2 0.02
66 6 0.06
ACGTcount: A:0.28, C:0.27, G:0.21, T:0.24
Consensus pattern (64 bp):
CCCGTGTGGTCTCTAAATCACAAACAATAAGTCACACAGCCTGGACACACGTCAATGTCTCTGG
Found at i:103907024 original size:17 final size:18
Alignment explanation
Indices: 103907004--103907037 Score: 61
Period size: 17 Copynumber: 1.9 Consensus size: 18
103906994 AAGTGAATTG
103907004 AAATTGCA-AAATTAAAT
1 AAATTGCAGAAATTAAAT
103907021 AAATTGCAGAAATTAAA
1 AAATTGCAGAAATTAAA
103907038 ATGAGGAATA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 8 0.50
18 8 0.50
ACGTcount: A:0.59, C:0.06, G:0.09, T:0.26
Consensus pattern (18 bp):
AAATTGCAGAAATTAAAT
Found at i:103907785 original size:10 final size:10
Alignment explanation
Indices: 103907758--103907795 Score: 51
Period size: 10 Copynumber: 3.8 Consensus size: 10
103907748 TTAAATTCTA
*
103907758 AAAGATAAAT
1 AAAGATAATT
103907768 ACAA-ATAATT
1 A-AAGATAATT
103907778 AAAGATAATT
1 AAAGATAATT
103907788 AAAGATAA
1 AAAGATAA
103907796 ATGAAAATAA
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
9 2 0.08
10 21 0.84
11 2 0.08
ACGTcount: A:0.66, C:0.03, G:0.08, T:0.24
Consensus pattern (10 bp):
AAAGATAATT
Found at i:103907824 original size:12 final size:12
Alignment explanation
Indices: 103907799--103907853 Score: 51
Period size: 12 Copynumber: 4.6 Consensus size: 12
103907789 AAGATAAATG
103907799 AAAATAAATCCT
1 AAAATAAATCCT
103907811 AAAATTAAAT-CT
1 AAAA-TAAATCCT
*
103907823 AAATAAAAATCCT
1 AAA-ATAAATCCT
*
103907836 -TAATAAATCCT
1 AAAATAAATCCT
*
103907847 AATATAA
1 AAAATAA
103907854 TTGAAATTAA
Statistics
Matches: 34, Mismatches: 5, Indels: 8
0.72 0.11 0.17
Matches are distributed among these distances:
11 8 0.24
12 18 0.53
13 8 0.24
ACGTcount: A:0.58, C:0.13, G:0.00, T:0.29
Consensus pattern (12 bp):
AAAATAAATCCT
Found at i:103932393 original size:15 final size:15
Alignment explanation
Indices: 103932375--103932404 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
103932365 TTGTTTTTTA
*
103932375 ATTTTTAATATTAAT
1 ATTTTTAACATTAAT
103932390 ATTTTTAACATTAAT
1 ATTTTTAACATTAAT
103932405 TTTAGTATAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.40, C:0.03, G:0.00, T:0.57
Consensus pattern (15 bp):
ATTTTTAACATTAAT
Found at i:103933868 original size:24 final size:24
Alignment explanation
Indices: 103933839--103933890 Score: 79
Period size: 24 Copynumber: 2.2 Consensus size: 24
103933829 TTACTAAAAG
103933839 ATTTAGTATTTATT-ACTATAATAT
1 ATTTAGTATTTATTAAC-ATAATAT
*
103933863 ATTTAGTATTTATTAACATAATTT
1 ATTTAGTATTTATTAACATAATAT
103933887 ATTT
1 ATTT
103933891 GACCTACTAA
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
24 24 0.92
25 2 0.08
ACGTcount: A:0.37, C:0.04, G:0.04, T:0.56
Consensus pattern (24 bp):
ATTTAGTATTTATTAACATAATAT
Found at i:103940183 original size:69 final size:69
Alignment explanation
Indices: 103940068--103940223 Score: 269
Period size: 69 Copynumber: 2.3 Consensus size: 69
103940058 CTGCAACCAG
* *
103940068 AATTCAGAGTCATTTCCGTGGTTGGCAGTTAAGAAGGAATTTTATGAAGAAGAAGCAAGCAATAA
1 AATTCAGAGTCATTTCCGTGGTTGGCAGTTAAGAAGGAATTGTATGAAGAAAAAGCAAGCAATAA
103940133 TTAA
66 TTAA
*
103940137 AATTCAGAGTCATTTCCGTGGTTGGCAGTTAAGACGGAATTGTATGAAGAAAAAGCAAGCAATAA
1 AATTCAGAGTCATTTCCGTGGTTGGCAGTTAAGAAGGAATTGTATGAAGAAAAAGCAAGCAATAA
103940202 TTAA
66 TTAA
103940206 AATTCAGAG-CAATTTCCG
1 AATTCAGAGTC-ATTTCCG
103940224 ACTGCAAAAA
Statistics
Matches: 83, Mismatches: 3, Indels: 2
0.94 0.03 0.02
Matches are distributed among these distances:
68 1 0.01
69 82 0.99
ACGTcount: A:0.38, C:0.12, G:0.22, T:0.27
Consensus pattern (69 bp):
AATTCAGAGTCATTTCCGTGGTTGGCAGTTAAGAAGGAATTGTATGAAGAAAAAGCAAGCAATAA
TTAA
Found at i:103942711 original size:13 final size:13
Alignment explanation
Indices: 103942689--103942755 Score: 53
Period size: 13 Copynumber: 4.9 Consensus size: 13
103942679 CAACATAAAT
*
103942689 TTTTCCAAAGCAC
1 TTTTCAAAAGCAC
*
103942702 TTTTCAAAAGTAC
1 TTTTCAAAAGCAC
*
103942715 TTCTCAAAAAGCAC
1 TTTTC-AAAAGCAC
* * *
103942729 TTCTCCACACAGAAC
1 TT-TTCA-AAAGCAC
103942744 TTTTCAAAAGCA
1 TTTTCAAAAGCA
103942756 AGCAATAAAG
Statistics
Matches: 40, Mismatches: 11, Indels: 6
0.70 0.19 0.11
Matches are distributed among these distances:
13 19 0.47
14 13 0.32
15 8 0.20
ACGTcount: A:0.37, C:0.27, G:0.07, T:0.28
Consensus pattern (13 bp):
TTTTCAAAAGCAC
Found at i:103942724 original size:14 final size:14
Alignment explanation
Indices: 103942695--103942733 Score: 53
Period size: 14 Copynumber: 2.9 Consensus size: 14
103942685 AAATTTTTCC
*
103942695 AAAGCACTTTTC-A
1 AAAGCACTTCTCAA
*
103942708 AAAGTACTTCTCAA
1 AAAGCACTTCTCAA
103942722 AAAGCACTTCTC
1 AAAGCACTTCTC
103942734 CACACAGAAC
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
13 10 0.45
14 12 0.55
ACGTcount: A:0.38, C:0.26, G:0.08, T:0.28
Consensus pattern (14 bp):
AAAGCACTTCTCAA
Found at i:103947691 original size:25 final size:25
Alignment explanation
Indices: 103947657--103947708 Score: 104
Period size: 25 Copynumber: 2.1 Consensus size: 25
103947647 TCCTTGTCAG
103947657 ATCTTTGCACACTGCATATGCTCAT
1 ATCTTTGCACACTGCATATGCTCAT
103947682 ATCTTTGCACACTGCATATGCTCAT
1 ATCTTTGCACACTGCATATGCTCAT
103947707 AT
1 AT
103947709 ATATATATAT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 27 1.00
ACGTcount: A:0.25, C:0.27, G:0.12, T:0.37
Consensus pattern (25 bp):
ATCTTTGCACACTGCATATGCTCAT
Found at i:103954910 original size:8 final size:8
Alignment explanation
Indices: 103954879--103954937 Score: 50
Period size: 8 Copynumber: 7.2 Consensus size: 8
103954869 GAAATCTAAT
103954879 AAATTATTA
1 AAATTA-TA
103954888 AAATTATA
1 AAATTATA
***
103954896 TTTTTATA
1 AAATTATA
103954904 AAATTATA
1 AAATTATA
103954912 AAA-TACTA
1 AAATTA-TA
103954920 AAATATATA
1 AAAT-TATA
103954929 AAATT-TA
1 AAATTATA
103954936 AA
1 AA
103954938 TTTTATTTAT
Statistics
Matches: 41, Mismatches: 6, Indels: 8
0.75 0.11 0.15
Matches are distributed among these distances:
7 6 0.15
8 21 0.51
9 12 0.29
10 2 0.05
ACGTcount: A:0.58, C:0.02, G:0.00, T:0.41
Consensus pattern (8 bp):
AAATTATA
Found at i:103955610 original size:18 final size:18
Alignment explanation
Indices: 103955589--103955623 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
103955579 TTTACTAGAA
*
103955589 TTTTTATATTTTTATAAC
1 TTTTTATATTTCTATAAC
*
103955607 TTTTTATGTTTCTATAA
1 TTTTTATATTTCTATAA
103955624 AACTTTAAAT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.26, C:0.06, G:0.03, T:0.66
Consensus pattern (18 bp):
TTTTTATATTTCTATAAC
Found at i:103955688 original size:15 final size:16
Alignment explanation
Indices: 103955668--103955709 Score: 59
Period size: 15 Copynumber: 2.6 Consensus size: 16
103955658 ATTACAGTTT
103955668 ATTTTTTTATTATAA-
1 ATTTTTTTATTATAAC
*
103955683 ATTTTTTTATTTTTAAC
1 ATTTTTTTA-TTATAAC
103955700 ATTTTTTTAT
1 ATTTTTTTAT
103955710 AAGTTTATAT
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
15 9 0.38
16 6 0.25
17 9 0.38
ACGTcount: A:0.26, C:0.02, G:0.00, T:0.71
Consensus pattern (16 bp):
ATTTTTTTATTATAAC
Found at i:103955703 original size:17 final size:16
Alignment explanation
Indices: 103955668--103955709 Score: 59
Period size: 17 Copynumber: 2.6 Consensus size: 16
103955658 ATTACAGTTT
103955668 ATTTTTTTA-TTATAA
1 ATTTTTTTATTTATAA
*
103955683 ATTTTTTTATTTTTAA
1 ATTTTTTTATTTATAA
103955699 CATTTTTTTAT
1 -ATTTTTTTAT
103955710 AAGTTTATAT
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
15 9 0.38
16 5 0.21
17 10 0.42
ACGTcount: A:0.26, C:0.02, G:0.00, T:0.71
Consensus pattern (16 bp):
ATTTTTTTATTTATAA
Found at i:103957599 original size:29 final size:30
Alignment explanation
Indices: 103957552--103957619 Score: 84
Period size: 30 Copynumber: 2.3 Consensus size: 30
103957542 TGGCCCAAGA
* *
103957552 GTAAATACTCAAAATTTGAAGGATTAA-AGT
1 GTAAATA-TCAAAAGTTGAAGGACTAATAGT
*
103957582 GTAAATATGAAAAGTTGAAGGACTAATAGT
1 GTAAATATCAAAAGTTGAAGGACTAATAGT
*
103957612 GCAAATAT
1 GTAAATAT
103957620 TTTAAGGGTG
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
29 16 0.48
30 17 0.52
ACGTcount: A:0.47, C:0.06, G:0.19, T:0.28
Consensus pattern (30 bp):
GTAAATATCAAAAGTTGAAGGACTAATAGT
Found at i:103960100 original size:46 final size:46
Alignment explanation
Indices: 103960043--103960362 Score: 525
Period size: 46 Copynumber: 7.0 Consensus size: 46
103960033 AGTGTGCTCT
* * *
103960043 CTGAAATGAAATGTGTAAGACTATGGTTGAAAGATACCATGGCAGC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
*
103960089 CTAATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
*
103960135 CTGATATGAAATGTGTAAGACCATGGTTGAAAGACACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
103960181 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
103960227 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
103960273 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* * * * * *
103960319 ATGACA-GAAAATGAGTAAGACCATAGTTGAAAGACACTATGGCA
1 CTGATATG-AAATGTGTAAGACCATGGTTGAAAGATACCATGGCA
103960363 TCATGTCAAA
Statistics
Matches: 260, Mismatches: 13, Indels: 2
0.95 0.05 0.01
Matches are distributed among these distances:
45 1 0.00
46 259 1.00
ACGTcount: A:0.38, C:0.15, G:0.24, T:0.23
Consensus pattern (46 bp):
CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
Found at i:103964765 original size:20 final size:21
Alignment explanation
Indices: 103964740--103964786 Score: 60
Period size: 21 Copynumber: 2.3 Consensus size: 21
103964730 TTTTCTTAAG
103964740 TAAAAAA-TACCATAAAATTC
1 TAAAAAACTACCATAAAATTC
** *
103964760 TAAAAAACTTTCATAATATTC
1 TAAAAAACTACCATAAAATTC
103964781 TAAAAA
1 TAAAAA
103964787 TTTTAAAAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
20 7 0.30
21 16 0.70
ACGTcount: A:0.57, C:0.13, G:0.00, T:0.30
Consensus pattern (21 bp):
TAAAAAACTACCATAAAATTC
Found at i:103971080 original size:2 final size:2
Alignment explanation
Indices: 103971075--103971105 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
103971065 AAAAAAAAAA
103971075 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
103971106 AAGTTCGAAT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:103977125 original size:43 final size:43
Alignment explanation
Indices: 103977075--103977221 Score: 190
Period size: 43 Copynumber: 3.4 Consensus size: 43
103977065 TATCCCTGAT
*
103977075 ATGGTCTTACATGTAATC-ACATAACGATGCCACTGTCCCAAAC
1 ATGGTCTTACATGTAATCTA-ATAACGATGCCAATGTCCCAAAC
* * * * *
103977118 AGGGTCTTACACGAAATCGATTAACGATGCCAATGTCCCAAAC
1 ATGGTCTTACATGTAATCTAATAACGATGCCAATGTCCCAAAC
* *
103977161 ATGGTCTTACATGTAATCTTAAT-ACAATGCCAATGTCCCAGAC
1 ATGGTCTTACATGTAATC-TAATAACGATGCCAATGTCCCAAAC
103977204 ATGGTCTTACATGTAATC
1 ATGGTCTTACATGTAATC
103977222 ACATATCGAT
Statistics
Matches: 90, Mismatches: 12, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
43 87 0.97
44 3 0.03
ACGTcount: A:0.33, C:0.24, G:0.16, T:0.27
Consensus pattern (43 bp):
ATGGTCTTACATGTAATCTAATAACGATGCCAATGTCCCAAAC
Found at i:103981195 original size:25 final size:25
Alignment explanation
Indices: 103981167--103981216 Score: 91
Period size: 25 Copynumber: 2.0 Consensus size: 25
103981157 AAAAATAATA
*
103981167 ATTTTTTTTTCAAAATTTAAACTTT
1 ATTTATTTTTCAAAATTTAAACTTT
103981192 ATTTATTTTTCAAAATTTAAACTTT
1 ATTTATTTTTCAAAATTTAAACTTT
103981217 CTCCTTTTTT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.34, C:0.08, G:0.00, T:0.58
Consensus pattern (25 bp):
ATTTATTTTTCAAAATTTAAACTTT
Found at i:103981225 original size:25 final size:24
Alignment explanation
Indices: 103981171--103981231 Score: 77
Period size: 25 Copynumber: 2.5 Consensus size: 24
103981161 ATAATAATTT
*
103981171 TTTTTTCAAAATTTAAACTTTATT
1 TTTTTTCAAAATTTAAACTTTATC
*
103981195 TATTTTTCAAAATTTAAACTTTCTCC
1 T-TTTTTCAAAATTTAAACTTTAT-C
*
103981221 TTTTTTTAAAA
1 TTTTTTCAAAA
103981232 AACACTATTT
Statistics
Matches: 32, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
24 1 0.03
25 30 0.94
26 1 0.03
ACGTcount: A:0.33, C:0.11, G:0.00, T:0.56
Consensus pattern (24 bp):
TTTTTTCAAAATTTAAACTTTATC
Found at i:103981309 original size:173 final size:173
Alignment explanation
Indices: 103981020--103981332 Score: 443
Period size: 173 Copynumber: 1.8 Consensus size: 173
103981010 AAAACATATT
*
103981020 TTTATTTTTCAAAATCTAAACTTTCTCCTTCAAAAAAAATACACTATTTTTATTAAAGATTAAAT
1 TTTATTTTTCAAAATCTAAACTTTCTCCTTCAAAAAAAATACACTATTTTTATTAAAAATTAAAT
* * * * *
103981085 GTTTTATTTTGAAGTAGTTAAAAAAGAATCAAAACTTTGTTTTAAAAATTTAAACATTCTTTTAA
66 GTTTTACTTTGAAATAGTTAAAAAAGAATCAAAAATTTATTTTAAAAATTTAAACATTCCTTTAA
*
103981150 AATAACTAAAAATAATAATTTTTTTTTCAAAATTTAAACTTTA
131 AATAAATAAAAATAATAATTTTTTTTTCAAAATTTAAACTTTA
* **** *
103981193 TTTATTTTTCAAAATTTAAACTTTCTCCTTTTTTTAAAAA-ACACTATTTTTCTTAAAAATTAAA
1 TTTATTTTTCAAAATCTAAACTTTCTCC-TTCAAAAAAAATACACTATTTTTATTAAAAATTAAA
* *
103981257 -GCTTTTACTTTGAAATAGTTGAAAAAA-AATCAAAAATTTATTTTAAAAATTTAATCTTTCCTT
65 TG-TTTTACTTTGAAATAGTT-AAAAAAGAATCAAAAATTTATTTTAAAAATTTAAACATTCCTT
103981320 TAAAATAAATAAA
128 TAAAATAAATAAA
103981333 TAAAAAACAT
Statistics
Matches: 122, Mismatches: 15, Indels: 6
0.85 0.10 0.04
Matches are distributed among these distances:
172 1 0.01
173 108 0.89
174 13 0.11
ACGTcount: A:0.43, C:0.10, G:0.04, T:0.44
Consensus pattern (173 bp):
TTTATTTTTCAAAATCTAAACTTTCTCCTTCAAAAAAAATACACTATTTTTATTAAAAATTAAAT
GTTTTACTTTGAAATAGTTAAAAAAGAATCAAAAATTTATTTTAAAAATTTAAACATTCCTTTAA
AATAAATAAAAATAATAATTTTTTTTTCAAAATTTAAACTTTA
Found at i:103981441 original size:45 final size:47
Alignment explanation
Indices: 103981346--103981442 Score: 107
Period size: 45 Copynumber: 2.2 Consensus size: 47
103981336 AAAACATATT
* *
103981346 TTTA-TTTCTCCAAAATCTAAACTTTCTTATTTTATAAAAAAAACAC
1 TTTATTTTCCCCAAAATCTAAACTTTCTTATTTTAAAAAAAAAACAC
* *
103981392 --TATTTTCCCCAAAATC-AAGCTTT-TTTTTTTAAAAAAAGAAAC-C
1 TTTATTTTCCCCAAAATCTAAACTTTCTTATTTTAAAAAAA-AAACAC
103981435 TTTATTTT
1 TTTATTTT
103981443 AGCAAGGAAA
Statistics
Matches: 43, Mismatches: 4, Indels: 9
0.77 0.07 0.16
Matches are distributed among these distances:
43 13 0.30
44 12 0.28
45 18 0.42
ACGTcount: A:0.38, C:0.16, G:0.02, T:0.43
Consensus pattern (47 bp):
TTTATTTTCCCCAAAATCTAAACTTTCTTATTTTAAAAAAAAAACAC
Found at i:103984683 original size:17 final size:16
Alignment explanation
Indices: 103984663--103984710 Score: 51
Period size: 17 Copynumber: 2.8 Consensus size: 16
103984653 CTTAATTAGT
*
103984663 TAATCTATCAAATTAA
1 TAATCTATCAAATCAA
*
103984679 CTAATTTACTCAAATCAA
1 -TAATCTA-TCAAATCAA
103984697 TAATCTATCCAAAT
1 TAATCTAT-CAAAT
103984711 ATTCTAGGCC
Statistics
Matches: 26, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
16 1 0.04
17 17 0.65
18 8 0.31
ACGTcount: A:0.46, C:0.19, G:0.00, T:0.35
Consensus pattern (16 bp):
TAATCTATCAAATCAA
Found at i:103985628 original size:17 final size:17
Alignment explanation
Indices: 103985606--103985639 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
103985596 TCACCTTATG
103985606 GTCTTACCATGCACAAA
1 GTCTTACCATGCACAAA
103985623 GTCTTACCATGCACAAA
1 GTCTTACCATGCACAAA
103985640 CAATCCATTA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.35, C:0.29, G:0.12, T:0.24
Consensus pattern (17 bp):
GTCTTACCATGCACAAA
Found at i:103991073 original size:21 final size:21
Alignment explanation
Indices: 103991041--103991081 Score: 50
Period size: 21 Copynumber: 2.0 Consensus size: 21
103991031 AGGCTCGAGG
103991041 GGCCTGTTTTAGGCC-ATACAA
1 GGCCTGTTTTA-GCCTATACAA
103991062 GGCCT-TTCTTAGCCTATACA
1 GGCCTGTT-TTAGCCTATACA
103991082 CCAAATGTTC
Statistics
Matches: 18, Mismatches: 0, Indels: 4
0.82 0.00 0.18
Matches are distributed among these distances:
20 5 0.28
21 13 0.72
ACGTcount: A:0.22, C:0.27, G:0.20, T:0.32
Consensus pattern (21 bp):
GGCCTGTTTTAGCCTATACAA
Found at i:103996016 original size:51 final size:51
Alignment explanation
Indices: 103995956--103996058 Score: 179
Period size: 51 Copynumber: 2.0 Consensus size: 51
103995946 AAAAGTTTGT
* *
103995956 TTACGCAGTTCAATTTCTTTACATTTGTGAAGTCTAGCTCAGTTAGAAGTA
1 TTACGCAGTTCAATTTCTTTACATTTGTGAAGTCTAGCTCAATGAGAAGTA
*
103996007 TTACGCAGTTCAATTTCTTTACATTTGTGGAGTCTAGCTCAATGAGAAGTA
1 TTACGCAGTTCAATTTCTTTACATTTGTGAAGTCTAGCTCAATGAGAAGTA
103996058 T
1 T
103996059 CAACTATCTT
Statistics
Matches: 49, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
51 49 1.00
ACGTcount: A:0.27, C:0.16, G:0.18, T:0.39
Consensus pattern (51 bp):
TTACGCAGTTCAATTTCTTTACATTTGTGAAGTCTAGCTCAATGAGAAGTA
Found at i:103998002 original size:140 final size:140
Alignment explanation
Indices: 103997573--103998002 Score: 628
Period size: 140 Copynumber: 3.1 Consensus size: 140
103997563 ATGTCTACTG
* * ** * *
103997573 CGACACTTTTGGGGCGAGACTTTTTTAAGTGTTGGGATAGACTTGTTGACCTACGCTTTGGCCAA
1 CGACACTTTTGGGCCGACACTTTCCTAAGTGTTGGGATAGACTTGTTGACATACACTTTGGCCAA
103997638 CTCTTTGTATAAGAGTTGGGATATGCATGCCTAAGGCAACGCTTAAATAAGAGTCGGCTTTGTCC
66 CTCTTTGTATAAGAGTTGGGATATGCATGCCTAAGGCAACGCTTAAATAAGAGTCGGCTTTGTCC
*
103997703 AACACTAAGC
131 AACACTATGC
** * * * **
103997713 CGACACTTTCAGGCTGACACTTTCCTATGTGTTGGGATAGACTCGCCGACATACACTTTGGCCAA
1 CGACACTTTTGGGCCGACACTTTCCTAAGTGTTGGGATAGACTTGTTGACATACACTTTGGCCAA
* *
103997778 CTCTTTATATAAGAGTTGGGATATGCATGCCTAAGGCAACGCTTAAATAAGAGTCGGCTGTGTCC
66 CTCTTTGTATAAGAGTTGGGATATGCATGCCTAAGGCAACGCTTAAATAAGAGTCGGCTTTGTCC
103997843 AACACTATGC
131 AACACTATGC
* **
103997853 CAACACTTTTGGGCCGACACTTTCCTAAGTGTTGGGATAGACTTGTTGTTATACACTTTGGCCAA
1 CGACACTTTTGGGCCGACACTTTCCTAAGTGTTGGGATAGACTTGTTGACATACACTTTGGCCAA
* * *
103997918 CCCTTTGTATAAGAGTTGGGATATGCAT-CCTTAAGACAACGCTTAAATAAGAGTCGGCTTTGTT
66 CTCTTTGTATAAGAGTTGGGATATGCATGCC-TAAGGCAACGCTTAAATAAGAGTCGGCTTTGTC
* *
103997982 CAACAGTATGT
130 CAACACTATGC
103997993 CGACACTTTT
1 CGACACTTTT
103998003 CTAAGTGATG
Statistics
Matches: 255, Mismatches: 34, Indels: 2
0.88 0.12 0.01
Matches are distributed among these distances:
139 2 0.01
140 253 0.99
ACGTcount: A:0.26, C:0.21, G:0.23, T:0.31
Consensus pattern (140 bp):
CGACACTTTTGGGCCGACACTTTCCTAAGTGTTGGGATAGACTTGTTGACATACACTTTGGCCAA
CTCTTTGTATAAGAGTTGGGATATGCATGCCTAAGGCAACGCTTAAATAAGAGTCGGCTTTGTCC
AACACTATGC
Found at i:103998092 original size:126 final size:126
Alignment explanation
Indices: 103997865--103998128 Score: 350
Period size: 126 Copynumber: 2.1 Consensus size: 126
103997855 ACACTTTTGG
* * * **
103997865 GCCGACACTTTCCTAAGTGTTGGGATAGACTTGTTGTTATACACTTTGGCCAACCCTTTGTATAA
1 GCCGACACTTTTCTAAGTGATGGGATAGACTTGTCGGCATACACTTTGGCCAACCCTTTGTATAA
* * * * *
103997930 GAGTTGGGATATGCATCCTTAAGACAACGCTTAAATAAGAGTCGGCTTTGTTCAACAGTAT
66 GAGTAGCGATATGCATCCTTAAGACAACACTTAAATAAGAGTCGGCTTTGTCCAACACTAT
* * ** * *
103997991 GTCGACACTTTTCTAAGTGATGGGGTAGACTTGTCGGCATACGTTTTGGCTAACTCTTTGTATAA
1 GCCGACACTTTTCTAAGTGATGGGATAGACTTGTCGGCATACACTTTGGCCAACCCTTTGTATAA
* *
103998056 GAGTAGCTATATGCATGCC-TAAGGCAACACTTAAATAAGAGTCGGCTTTGTCCAACACTAT
66 GAGTAGCGATATGCAT-CCTTAAGACAACACTTAAATAAGAGTCGGCTTTGTCCAACACTAT
103998117 GCCGACACTTTT
1 GCCGACACTTTT
103998129 GGGCTAACAC
Statistics
Matches: 118, Mismatches: 19, Indels: 2
0.85 0.14 0.01
Matches are distributed among these distances:
126 116 0.98
127 2 0.02
ACGTcount: A:0.27, C:0.20, G:0.22, T:0.32
Consensus pattern (126 bp):
GCCGACACTTTTCTAAGTGATGGGATAGACTTGTCGGCATACACTTTGGCCAACCCTTTGTATAA
GAGTAGCGATATGCATCCTTAAGACAACACTTAAATAAGAGTCGGCTTTGTCCAACACTAT
Found at i:103998207 original size:266 final size:266
Alignment explanation
Indices: 103997728--103998246 Score: 707
Period size: 266 Copynumber: 2.0 Consensus size: 266
103997718 CTTTCAGGCT
* *
103997728 GACACTTTCCTATGTGTTGGGATAGACTCGCCGACATACACTTTGGCCAACTCTTTATATAAGAG
1 GACACTTTCCTAAGTGATGGGATAGACTCGCCGACATACACTTTGGCCAACTCTTTATATAAGAG
* * *
103997793 TTGGGATATGCATGCCTAAGGCAACGCTTAAATAAGAGTCGGCTGTGTCCAACACTATGCCAACA
66 TAGCGATATGCATGCCTAAGGCAACACTTAAATAAGAGTCGGCTGTGTCCAACACTATGCCAACA
* *****
103997858 CTTTTGGGCCGACACTTTCCTAAGTGTTGGGATAGACTTGTTGTTATACACTTTGGCCAACCCTT
131 CTTTTGGGCCAACACTTTCCTAAGTGTTGGGATAGACTTGCCAACATACACTTTGGCCAACCCTT
* * *
103997923 TGTATAAGAGTTGGGATATGCAT-CCTTAAGACAACGCTTAAATAAGAGTCGGCTTTGTTCAACA
196 TGGACAAGAGTCGGGATATGCATGCC-TAAGACAACGCTTAAATAAGAGTCGGCTTTGTTCAACA
103997987 GTATGTC
260 GTATGTC
* * * * * ** * *
103997994 GACACTTTTCTAAGTGATGGGGTAGACTTGTCGGCATACGTTTTGGCTAACTCTTTGTATAAGAG
1 GACACTTTCCTAAGTGATGGGATAGACTCGCCGACATACACTTTGGCCAACTCTTTATATAAGAG
* * *
103998059 TAGCTATATGCATGCCTAAGGCAACACTTAAATAAGAGTCGGCTTTGTCCAACACTATGCCGACA
66 TAGCGATATGCATGCCTAAGGCAACACTTAAATAAGAGTCGGCTGTGTCCAACACTATGCCAACA
* * ** *
103998124 CTTTTGGGCTAACACTTTCTTAAGTGTTGGGATAGACTTGCCAACATATGCTTTGGCCAACTCTT
131 CTTTTGGGCCAACACTTTCCTAAGTGTTGGGATAGACTTGCCAACATACACTTTGGCCAACCCTT
* * * *
103998189 TGGACGAGGGTCGGGATATGCATGCCTAAGGCAACGCTTAAATAAGAGTCGGTTTTGT
196 TGGACAAGAGTCGGGATATGCATGCCTAAGACAACGCTTAAATAAGAGTCGGCTTTGT
103998247 CCAATACTAT
Statistics
Matches: 217, Mismatches: 35, Indels: 2
0.85 0.14 0.01
Matches are distributed among these distances:
266 215 0.99
267 2 0.01
ACGTcount: A:0.26, C:0.20, G:0.23, T:0.31
Consensus pattern (266 bp):
GACACTTTCCTAAGTGATGGGATAGACTCGCCGACATACACTTTGGCCAACTCTTTATATAAGAG
TAGCGATATGCATGCCTAAGGCAACACTTAAATAAGAGTCGGCTGTGTCCAACACTATGCCAACA
CTTTTGGGCCAACACTTTCCTAAGTGTTGGGATAGACTTGCCAACATACACTTTGGCCAACCCTT
TGGACAAGAGTCGGGATATGCATGCCTAAGACAACGCTTAAATAAGAGTCGGCTTTGTTCAACAG
TATGTC
Found at i:103999516 original size:21 final size:22
Alignment explanation
Indices: 103999492--103999537 Score: 58
Period size: 22 Copynumber: 2.1 Consensus size: 22
103999482 AGGTCTATAA
*
103999492 TTTATGATTTA-AAGTTTAGGG
1 TTTAAGATTTATAAGTTTAGGG
* *
103999513 TTTAAGATTTATAATTTTATGG
1 TTTAAGATTTATAAGTTTAGGG
103999535 TTT
1 TTT
103999538 TAGGGTTTTG
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
21 10 0.48
22 11 0.52
ACGTcount: A:0.28, C:0.00, G:0.17, T:0.54
Consensus pattern (22 bp):
TTTAAGATTTATAAGTTTAGGG
Found at i:103999586 original size:29 final size:28
Alignment explanation
Indices: 103999493--103999588 Score: 79
Period size: 29 Copynumber: 3.3 Consensus size: 28
103999483 GGTCTATAAT
* *
103999493 TTATGATTTAAAGTTTAGGGTTTAAGAT-
1 TTATGTTTTATAGTTTAGGGTTT-AGATG
* * *
103999521 TTATAATTTTATGGTTTTAGGGTTTTG-TGG
1 TTAT-GTTTTATAG-TTTAGGGTTTAGAT-G
103999551 TTTATGTTTTATAGTTTAGGGTTTAGATG
1 -TTATGTTTTATAGTTTAGGGTTTAGATG
103999580 TTAATGTTT
1 TT-ATGTTT
103999589 GGGTTTTGAG
Statistics
Matches: 53, Mismatches: 8, Indels: 13
0.72 0.11 0.18
Matches are distributed among these distances:
28 7 0.13
29 24 0.45
30 18 0.34
31 4 0.08
ACGTcount: A:0.23, C:0.00, G:0.23, T:0.54
Consensus pattern (28 bp):
TTATGTTTTATAGTTTAGGGTTTAGATG
Found at i:103999615 original size:27 final size:26
Alignment explanation
Indices: 103999585--103999652 Score: 84
Period size: 27 Copynumber: 2.5 Consensus size: 26
103999575 AGATGTTAAT
*
103999585 GTTT-GGGTTTTGAGTTTTAGTTTTAG
1 GTTTAGGGTTTTGAG-TTTAGGTTTAG
*
103999611 AGTTTAGGGTTTTGTGTTTAGGTTTAG
1 -GTTTAGGGTTTTGAGTTTAGGTTTAG
103999638 GTTTAGGGGTTTTGA
1 GTTTA-GGGTTTTGA
103999653 TAAAAATGTC
Statistics
Matches: 36, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
26 5 0.14
27 22 0.61
28 9 0.25
ACGTcount: A:0.13, C:0.00, G:0.34, T:0.53
Consensus pattern (26 bp):
GTTTAGGGTTTTGAGTTTAGGTTTAG
Found at i:104000499 original size:3 final size:3
Alignment explanation
Indices: 104000485--104000522 Score: 67
Period size: 3 Copynumber: 12.7 Consensus size: 3
104000475 TGTGCATGGG
*
104000485 GAT GAA GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GA
1 GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GA
104000523 AGAAGACGAA
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
3 33 1.00
ACGTcount: A:0.37, C:0.00, G:0.34, T:0.29
Consensus pattern (3 bp):
GAT
Found at i:104000533 original size:6 final size:6
Alignment explanation
Indices: 104000485--104000545 Score: 59
Period size: 6 Copynumber: 10.2 Consensus size: 6
104000475 TGTGCATGGG
* * * * * * *
104000485 GATGAA GATGAT GATGAT GATGAT GATGAT GATGAT GAAGAA GACGAA
1 GATGAA GATGAA GATGAA GATGAA GATGAA GATGAA GATGAA GATGAA
104000533 GATGAA GATGAA G
1 GATGAA GATGAA G
104000546 CCAACGCCGA
Statistics
Matches: 50, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
6 50 1.00
ACGTcount: A:0.43, C:0.02, G:0.34, T:0.21
Consensus pattern (6 bp):
GATGAA
Found at i:104003030 original size:35 final size:35
Alignment explanation
Indices: 104002975--104003407 Score: 252
Period size: 35 Copynumber: 12.0 Consensus size: 35
104002965 AAATAAATGC
* *
104002975 CTTAGACGTGTTTATTCCAACCTTTTTAAGATTGT
1 CTTAGACGGGTTTATTCCAACCTTTTTAAGGTTGT
* *
104003010 CTTAAACGGGTTTATTCCAACCTTTTAAAGGTTG-
1 CTTAGACGGGTTTATTCCAACCTTTTTAAGGTTGT
* * *
104003044 CTTTAGATGCGTCTA-TCCTAACCTTTTTAAAGGTTGT
1 C-TTAGACGGGTTTATTCC-AACCTTTTT-AAGGTTGT
* * * * *
104003081 TTTAAACAAGGTATATCCCAACCTTTTTAAGGTTGT
1 CTTAGAC-GGGTTTATTCCAACCTTTTTAAGGTTGT
* * *
104003117 ATTAGACGGCTTTA-TCTCAACCTTTTTAAAGG-TAT
1 CTTAGACGGGTTTATTC-CAACCTTTTT-AAGGTTGT
* * * *
104003152 CTTTAGACAAGGTTTA-TCTTAGCCTTTTTAGGGTTG-
1 C-TTAGAC-GGGTTTATTC-CAACCTTTTTAAGGTTGT
* * * * * * *
104003188 CTTTAAATGAGTCTATCCCAACCTTTTTTAAGGGTAGC
1 C-TTAGACGGGTTTATTCCAACC-TTTTTAA-GGTTGT
* *
104003226 CTTAGACAAGGTTTA-TCTCAACCTTTTTAAGATTGT
1 CTTAGAC-GGGTTTATTC-CAACCTTTTTAAGGTTGT
* * * *
104003262 CTTAAACGAGTTTATCCCAGCCTTTTTTAAGAGTTGT
1 CTTAGACGGGTTTATTCCAACC-TTTTTAAG-GTTGT
* *
104003299 CTTAGACAAGGTTTA-TCTCAACCTTTTTTAAGGATTGC
1 CTTAGAC-GGGTTTATTC-CAACC-TTTTTAAGG-TTGT
* * *
104003337 CTTAGACTGGTCTATTCCAACCTTTTTAAGGCTGT
1 CTTAGACGGGTTTATTCCAACCTTTTTAAGGTTGT
* **
104003372 CTTAGACGGGTCTACCCCAACCTTTTTCAAAGGTTG
1 CTTAGACGGGTTTATTCCAACCTTTTT--AAGGTTG
104003408 GCCTTGACTA
Statistics
Matches: 303, Mismatches: 69, Indels: 50
0.72 0.16 0.12
Matches are distributed among these distances:
34 5 0.02
35 105 0.35
36 77 0.25
37 74 0.24
38 42 0.14
ACGTcount: A:0.25, C:0.19, G:0.16, T:0.40
Consensus pattern (35 bp):
CTTAGACGGGTTTATTCCAACCTTTTTAAGGTTGT
Found at i:104003075 original size:36 final size:35
Alignment explanation
Indices: 104003028--104003407 Score: 126
Period size: 37 Copynumber: 10.5 Consensus size: 35
104003018 GGTTTATTCC
*
104003028 AACC-TTTTAAAGGTTGCTTTAGATGCGTCTATCCT
1 AACCTTTTTAAAGGTTGCTTTAGAAG-GTCTATCCT
* * * *
104003063 AACCTTTTTAAAGGTTGTTTTAAACAAGGTATATCCC
1 AACCTTTTTAAAGGTTGCTTT--AGAAGGTCTATCCT
* *
104003100 AACCTTTTT-AAGGTTG-TATTAGACGGCTTTAT-CT
1 AACCTTTTTAAAGGTTGCT-TTAGAAGG-TCTATCCT
* *
104003134 CAACCTTTTTAAAGGTAT-CTTTAGACAAGGTTTATCTT
1 -AACCTTTTTAAAGGT-TGCTTTAG--AAGGTCTATCCT
* * *
104003172 AGCCTTTTT-AGGGTTGCTTTA-AATGAGTCTATCCC
1 AACCTTTTTAAAGGTTGCTTTAGAA-G-GTCTATCCT
* * * *
104003207 AACCTTTTTTAAGGGTAGCCTTAGACAAGGTTTAT-CT
1 AACC-TTTTTAAAGGTTGCTTTAG--AAGGTCTATCCT
* * *
104003244 CAACCTTTTT-AAGATTG-TCTTA-AACGAGTTTATCCC
1 -AACCTTTTTAAAGGTTGCT-TTAGAA-G-GTCTATCCT
* * *
104003280 AGCCTTTTTTAAGAGTTG-TCTTAGACAAGGTTTAT-CT
1 AACCTTTTTAAAG-GTTGCT-TTAG--AAGGTCTATCCT
* * *
104003317 CAACCTTTTTTAAGGATTGCCTTAGACTGGTCTATTCC-
1 -AACCTTTTTAAAGG-TTGCTTTAGA-AGGTCTA-TCCT
* * * *
104003355 AACCTTTTT-AAGGCTG-TCTTAGACGGGTCTACCCC
1 AACCTTTTTAAAGGTTGCT-TTAGA-AGGTCTATCCT
104003390 AACCTTTTTCAAAGGTTG
1 AACCTTTTT-AAAGGTTG
104003408 GCCTTGACTA
Statistics
Matches: 267, Mismatches: 38, Indels: 78
0.70 0.10 0.20
Matches are distributed among these distances:
33 4 0.01
34 9 0.03
35 65 0.24
36 63 0.24
37 77 0.29
38 42 0.16
39 3 0.01
40 4 0.01
ACGTcount: A:0.25, C:0.19, G:0.17, T:0.39
Consensus pattern (35 bp):
AACCTTTTTAAAGGTTGCTTTAGAAGGTCTATCCT
Found at i:104003114 original size:72 final size:71
Alignment explanation
Indices: 104002991--104003378 Score: 349
Period size: 72 Copynumber: 5.4 Consensus size: 71
104002981 CGTGTTTATT
* * * *
104002991 CCAACCTTTTT-AAGATTGTCTTAAAC-GGGTTTAT-TCCAACCTTTTAAAGGTTGCTTTAGATG
1 CCAACCTTTTTAAAGGTTGTCTTAGACAAGGTTTATCT-CAACCTTTTTAAGGTTGCTTTAGATG
104003053 CGTCTATC
65 -GTCTATC
* * * * * *
104003061 CTAACCTTTTTAAAGGTTGTTTTAAACAAGGTATATCCCAACCTTTTTAAGGTTG-TATTAGACG
1 CCAACCTTTTTAAAGGTTGTCTTAGACAAGGTTTATCTCAACCTTTTTAAGGTTGCT-TTAGATG
*
104003125 GCTTTATC
65 G-TCTATC
* * * * * *
104003133 TCAACCTTTTTAAAGG-TATCTTTAGACAAGGTTTATCTTAGCCTTTTTAGGGTTGCTTTAAATG
1 CCAACCTTTTTAAAGGTTGTC-TTAGACAAGGTTTATCTCAACCTTTTTAAGGTTGCTTTAGATG
104003197 AGTCTATC
65 -GTCTATC
* * * * * *
104003205 CCAACCTTTTTTAAGGGTAGCCTTAGACAAGGTTTATCTCAACCTTTTTAAGATTG-TCTTAAAC
1 CCAACC-TTTTTAAAGGTTGTCTTAGACAAGGTTTATCTCAACCTTTTTAAGGTTGCT-TTAGAT
*
104003269 GAGTTTATC
64 G-GTCTATC
* * *
104003278 CCAGCCTTTTTTAAGAGTTGTCTTAGACAAGGTTTATCTCAACCTTTTTTAAGGATTGCCTTAGA
1 CCAACCTTTTTAAAG-GTTGTCTTAGACAAGGTTTATCTCAACC-TTTTTAAGG-TTGCTTTAGA
*
104003343 CTGGTCTATT
63 -TGGTCTATC
*
104003353 CCAACCTTTTT-AAGGCTGTCTTAGAC
1 CCAACCTTTTTAAAGGTTGTCTTAGAC
104003379 GGGTCTACCC
Statistics
Matches: 256, Mismatches: 46, Indels: 29
0.77 0.14 0.09
Matches are distributed among these distances:
70 10 0.04
71 17 0.07
72 98 0.38
73 96 0.38
74 12 0.05
75 22 0.09
76 1 0.00
ACGTcount: A:0.25, C:0.19, G:0.16, T:0.40
Consensus pattern (71 bp):
CCAACCTTTTTAAAGGTTGTCTTAGACAAGGTTTATCTCAACCTTTTTAAGGTTGCTTTAGATGG
TCTATC
Found at i:104003205 original size:107 final size:107
Alignment explanation
Indices: 104002991--104003407 Score: 293
Period size: 110 Copynumber: 3.8 Consensus size: 107
104002981 CGTGTTTATT
* * *
104002991 CCAACCTTTTTAAGATTGTCTTAAACGGGTTTAT-TCCAACC-TTTTAAAGGTTGCTTTAGATGC
1 CCAACCTTTTTAAGGTTGTCTTAGAC-GGTTTATCT-CAACCTTTTTAAAGGTTGCTTTAGAAGC
*
104003054 GTCTATCCTAACCTTTTTAAAGGTTGTTTTAAACAAGGTATATC
64 GTCTATCCTAACCTTTTTAAAGGTTGCTTTAAACAAGGTATATC
*
104003098 CCAACCTTTTTAAGGTTGTATTAGACGGCTTTATCTCAACCTTTTTAAAGGTAT-CTTTAGACAA
1 CCAACCTTTTTAAGGTTGTCTTAGACGG-TTTATCTCAACCTTTTTAAAGGT-TGCTTTAG--AA
* * * * ** *
104003162 G-GTTTATCTTAGCCTTTTT-AGGGTTGCTTTAAATGA-GTCTATC
62 GCGTCTATCCTAACCTTTTTAAAGGTTGCTTTAAACAAGGTATATC
* * *
104003205 CCAACCTTTTTTAAGGGTAGCCTTAGACAAGGTTTATCTCAACCTTTTT-AAGATTG-TCTTA-A
1 CCAACC-TTTTTAA-GGTTGTCTTAGAC--GGTTTATCTCAACCTTTTTAAAGGTTGCT-TTAGA
* * * * * * *
104003267 ACGAGTTTATCCCAGCCTTTTTTAAGAGTTG-TCTTAGACAAGGTTTATC
61 A-GCGTCTATCCTAACCTTTTTAAAG-GTTGCT-TTAAACAAGGTATATC
* * * *
104003316 TCAACCTTTTTTAAGGATTGCCTTAGACTGGTCTAT-TCCAACCTTTTT-AAGGCTG-TCTTAGA
1 CCAACC-TTTTTAAGG-TTGTCTTAGAC-GGTTTATCT-CAACCTTTTTAAAGGTTGCT-TTAGA
* * * *
104003378 CGGGTCTACCCCAACCTTTTTCAAAGGTTG
61 AGCGTCTATCCTAACCTTTTT-AAAGGTTG
104003408 GCCTTGACTA
Statistics
Matches: 253, Mismatches: 35, Indels: 41
0.77 0.11 0.12
Matches are distributed among these distances:
106 4 0.02
107 46 0.18
108 55 0.22
109 37 0.15
110 76 0.30
111 35 0.14
ACGTcount: A:0.25, C:0.19, G:0.16, T:0.40
Consensus pattern (107 bp):
CCAACCTTTTTAAGGTTGTCTTAGACGGTTTATCTCAACCTTTTTAAAGGTTGCTTTAGAAGCGT
CTATCCTAACCTTTTTAAAGGTTGCTTTAAACAAGGTATATC
Found at i:104003358 original size:110 final size:111
Alignment explanation
Indices: 104003201--104003439 Score: 279
Period size: 110 Copynumber: 2.2 Consensus size: 111
104003191 TAAATGAGTC
* * *
104003201 TATCCCAACCTTTTTTAAGGGTAGCCTTAGACAAGGTTTATCTCAACCTTTTTAAGATTGTCTTA
1 TATCCCAACCTTTTTTAAGGATAGCCTTAGACAAGGTCTATCTCAACCTTTTTAAGACTGTCTTA
* * * * *
104003266 AACGAGTTTATCCCAGCCTTTTT-TAAGAGTT-GTCTTAGACAAGGTT
66 AACGAGTCTACCCCAACCTTTTTCAAAG-GTTGGCCTT-GACAAGGTT
* * * *
104003312 TATCTCAACCTTTTTTAAGGATTGCCTTAGAC-TGGTCTAT-TCCAACCTTTTTAAGGCTGTCTT
1 TATCCCAACCTTTTTTAAGGATAGCCTTAGACAAGGTCTATCT-CAACCTTTTTAAGACTGTCTT
* * *
104003375 AGACGGGTCTACCCCAACCTTTTTCAAAGGTTGGCCTTGACTAGGTT
65 AAACGAGTCTACCCCAACCTTTTTCAAAGGTTGGCCTTGACAAGGTT
*
104003422 TATCCCAACATTTTTTAA
1 TATCCCAACCTTTTTTAA
104003440 AGGTCGGCAT
Statistics
Matches: 108, Mismatches: 17, Indels: 7
0.82 0.13 0.05
Matches are distributed among these distances:
109 1 0.01
110 71 0.66
111 36 0.33
ACGTcount: A:0.24, C:0.21, G:0.16, T:0.38
Consensus pattern (111 bp):
TATCCCAACCTTTTTTAAGGATAGCCTTAGACAAGGTCTATCTCAACCTTTTTAAGACTGTCTTA
AACGAGTCTACCCCAACCTTTTTCAAAGGTTGGCCTTGACAAGGTT
Found at i:104003373 original size:73 final size:71
Alignment explanation
Indices: 104002972--104003378 Score: 342
Period size: 73 Copynumber: 5.6 Consensus size: 71
104002962 AGAAAATAAA
* * * * *
104002972 TGCCTTAGACGTGTTTATTCCAACCTTTTTAAGATTGTCTTAAAC-GGGTTTAT-TCCAACCTTT
1 TGCCTTAGACGAGTCTATTCCAACCTTTTTAAGGTTGTCTTAGACAAGGTTTATCT-CAACCTTT
*
104003035 TAAAGGT
65 TTAAGGT
* * * * * * *
104003042 TGCTTTAGATGCGTCTA-TCCTAACCTTTTTAAAGGTTGTTTTAAACAAGGTATATCCCAACCTT
1 TGCCTTAGACGAGTCTATTCC-AACCTTTTT-AAGGTTGTCTTAGACAAGGTTTATCTCAACCTT
104003106 TTTAAGGT
64 TTTAAGGT
** * * * *
104003114 TGTATTAGACG-G-CTTTATCTCAACCTTTTTAAAGG-TATCTTTAGACAAGGTTTATCTTAGCC
1 TGCCTTAGACGAGTCTAT-TC-CAACCTTTTT-AAGGTTGTC-TTAGACAAGGTTTATCTCAACC
*
104003176 TTTTTAGGGT
62 TTTTTAAGGT
* * * * * *
104003186 TGCTTTAAATGAGTCTATCCCAACCTTTTTTAAGGGTAGCCTTAGACAAGGTTTATCTCAACCTT
1 TGCCTTAGACGAGTCTATTCCAACC-TTTTTAA-GGTTGTCTTAGACAAGGTTTATCTCAACCTT
*
104003251 TTTAAGAT
64 TTTAAGGT
* * * * *
104003259 TGTCTTAAACGAGTTTATCCCAGCCTTTTTTAAGAGTTGTCTTAGACAAGGTTTATCTCAACCTT
1 TGCCTTAGACGAGTCTATTCCAACC-TTTTTAAG-GTTGTCTTAGACAAGGTTTATCTCAACC-T
104003324 TTTTAAGGAT
63 TTTTAAGG-T
*
104003334 TGCCTTAGACTG-GTCTATTCCAACCTTTTTAAGGCTGTCTTAGAC
1 TGCCTTAGAC-GAGTCTATTCCAACCTTTTTAAGGTTGTCTTAGAC
104003379 GGGTCTACCC
Statistics
Matches: 271, Mismatches: 49, Indels: 31
0.77 0.14 0.09
Matches are distributed among these distances:
69 3 0.01
70 24 0.09
71 16 0.06
72 85 0.31
73 103 0.38
74 20 0.07
75 19 0.07
76 1 0.00
ACGTcount: A:0.25, C:0.18, G:0.16, T:0.41
Consensus pattern (71 bp):
TGCCTTAGACGAGTCTATTCCAACCTTTTTAAGGTTGTCTTAGACAAGGTTTATCTCAACCTTTT
TAAGGT
Found at i:104003412 original size:73 final size:74
Alignment explanation
Indices: 104003198--104003436 Score: 170
Period size: 73 Copynumber: 3.2 Consensus size: 74
104003188 CTTTAAATGA
* * * * * *
104003198 GTCTATCCCAACCTTTTTTAAG-GGTAGCCTTAGACAAGGTTTATCTCAACCTTTTT-AA-GATT
1 GTCTATCCCAA-CATTTTTAAGAGCT-GTCTTAGACAAGGTCTACCCCAACCTTTTTAAAGGATT
* * *
104003260 GTCTTAAACGA-
64 GCCTT-GACTAG
* * * * * * * *
104003271 GTTTATCCCAGCCTTTTTTAAGAGTTGTCTTAGACAAGGTTTATCTCAACCTTTTTTAAGGATTG
1 GTCTATCCCA-ACATTTTTAAGAGCTGTCTTAGACAAGGTCTACCCCAACCTTTTTAAAGGATTG
104003336 CCTTAGACT-G
65 CCTT-GACTAG
* * *
104003346 GTCTATTCCAACCTTTTTAAG-GCTGTCTTAGAC-GGGTCTACCCCAACCTTTTTCAAAGG-TTG
1 GTCTATCCCAACATTTTTAAGAGCTGTCTTAGACAAGGTCTACCCCAACCTTTTT-AAAGGATT-
104003408 GCCTTGACTAG
64 GCCTTGACTAG
*
104003419 GTTTATCCCAACATTTTT
1 GTCTATCCCAACATTTTT
104003437 TAAAGGTCGG
Statistics
Matches: 138, Mismatches: 20, Indels: 16
0.79 0.11 0.09
Matches are distributed among these distances:
72 22 0.16
73 84 0.61
74 13 0.09
75 19 0.14
ACGTcount: A:0.23, C:0.22, G:0.16, T:0.38
Consensus pattern (74 bp):
GTCTATCCCAACATTTTTAAGAGCTGTCTTAGACAAGGTCTACCCCAACCTTTTTAAAGGATTGC
CTTGACTAG
Found at i:104004897 original size:30 final size:30
Alignment explanation
Indices: 104004861--104004917 Score: 96
Period size: 30 Copynumber: 1.9 Consensus size: 30
104004851 CTGGGCATTT
*
104004861 CCACACGGGCTGGACACATGCCCATGTAAG
1 CCACACGGGCTAGACACATGCCCATGTAAG
*
104004891 CCACACGGGCTAGACTCATGCCCATGT
1 CCACACGGGCTAGACACATGCCCATGT
104004918 GTCAATCCGT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.25, C:0.35, G:0.25, T:0.16
Consensus pattern (30 bp):
CCACACGGGCTAGACACATGCCCATGTAAG
Found at i:104006912 original size:30 final size:30
Alignment explanation
Indices: 104006860--104006917 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
104006850 CACGGCTATG
* *
104006860 ACACACGGGCGTGTGGCCTACCCGTGTGTC
1 ACACACGGGCGTATAGCCTACCCGTGTGTC
**
104006890 ACACACGGGCGTATAGTTTACCCGTGTG
1 ACACACGGGCGTATAGCCTACCCGTGTG
104006918 GAAATGCCTA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.17, C:0.29, G:0.31, T:0.22
Consensus pattern (30 bp):
ACACACGGGCGTATAGCCTACCCGTGTGTC
Found at i:104026869 original size:24 final size:24
Alignment explanation
Indices: 104026842--104026891 Score: 66
Period size: 24 Copynumber: 2.1 Consensus size: 24
104026832 ATGTTTTTAC
104026842 TTTTATTCTACTTTAAGAC-TATTT
1 TTTTATTCTACTTTAAG-CTTATTT
* *
104026866 TTTTATTTTTCTTTAAGCTTATTT
1 TTTTATTCTACTTTAAGCTTATTT
104026890 TT
1 TT
104026892 ATTAGGTGTT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
23 1 0.04
24 22 0.96
ACGTcount: A:0.20, C:0.10, G:0.04, T:0.66
Consensus pattern (24 bp):
TTTTATTCTACTTTAAGCTTATTT
Found at i:104029303 original size:14 final size:14
Alignment explanation
Indices: 104029284--104029310 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
104029274 ATATTAGGCT
104029284 TGTTCTTAATTATG
1 TGTTCTTAATTATG
104029298 TGTTCTTAATTAT
1 TGTTCTTAATTAT
104029311 TGTATTGATA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.22, C:0.07, G:0.11, T:0.59
Consensus pattern (14 bp):
TGTTCTTAATTATG
Found at i:104031189 original size:20 final size:20
Alignment explanation
Indices: 104031164--104031207 Score: 72
Period size: 20 Copynumber: 2.2 Consensus size: 20
104031154 ATCCGGTATT
104031164 GATACTTTTCTTAAGGA-ATC
1 GATACTTTTCTTAA-GATATC
104031184 GATACTTTTCTTAAGATATC
1 GATACTTTTCTTAAGATATC
104031204 GATA
1 GATA
104031208 TATTTCCTAA
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
19 2 0.09
20 21 0.91
ACGTcount: A:0.32, C:0.14, G:0.14, T:0.41
Consensus pattern (20 bp):
GATACTTTTCTTAAGATATC
Found at i:104031213 original size:20 final size:19
Alignment explanation
Indices: 104031164--104031230 Score: 64
Period size: 20 Copynumber: 3.3 Consensus size: 19
104031154 ATCCGGTATT
104031164 GATACTTTTCTTAAGGA-ATC
1 GATA-TTTTCTTAA-GATATC
104031184 GATACTTTTCTTAAGATATC
1 GATA-TTTTCTTAAGATATC
* *
104031204 GATATATTTCCTAAAGGTATC
1 GATAT-TTT-CTTAAGATATC
104031225 GATATT
1 GATATT
104031231 CTTACTCCAA
Statistics
Matches: 42, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
19 3 0.07
20 25 0.60
21 14 0.33
ACGTcount: A:0.31, C:0.13, G:0.13, T:0.42
Consensus pattern (19 bp):
GATATTTTCTTAAGATATC
Found at i:104034972 original size:34 final size:34
Alignment explanation
Indices: 104034928--104034994 Score: 125
Period size: 34 Copynumber: 2.0 Consensus size: 34
104034918 TTGGTAATTT
104034928 AAGTAAGTGCGTATACTTGATTATATGAGGTATC
1 AAGTAAGTGCGTATACTTGATTATATGAGGTATC
*
104034962 AAGTACGTGCGTATACTTGATTATATGAGGTAT
1 AAGTAAGTGCGTATACTTGATTATATGAGGTAT
104034995 TATATCATGG
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 32 1.00
ACGTcount: A:0.31, C:0.09, G:0.24, T:0.36
Consensus pattern (34 bp):
AAGTAAGTGCGTATACTTGATTATATGAGGTATC
Found at i:104036406 original size:34 final size:33
Alignment explanation
Indices: 104036368--104036485 Score: 132
Period size: 34 Copynumber: 3.5 Consensus size: 33
104036358 AGGTTTAAAA
104036368 TTTTAAAAAAATTAATTAAATTAGGTCTTAGGGT
1 TTTTAAAAAAATTAATTAAATTAGGT-TTAGGGT
** *
104036402 TTTTAAGTAAATTAATTAAATTAGAGTTTAGGTTT
1 TTTTAAAAAAATTAATTAAATTAG-GTTTAGG-GT
* * *
104036437 TTTTTAAAAAATTAATTAAATTAAGGATTAAGG-
1 TTTTAAAAAAATTAATTAAATT-AGGTTTAGGGT
104036470 TTTTAAAAAAA-TAATT
1 TTTTAAAAAAATTAATT
104036486 TTGTGTTTAG
Statistics
Matches: 71, Mismatches: 10, Indels: 8
0.80 0.11 0.09
Matches are distributed among these distances:
32 5 0.07
33 10 0.14
34 27 0.38
35 27 0.38
36 2 0.03
ACGTcount: A:0.44, C:0.01, G:0.12, T:0.43
Consensus pattern (33 bp):
TTTTAAAAAAATTAATTAAATTAGGTTTAGGGT
Found at i:104036829 original size:126 final size:125
Alignment explanation
Indices: 104036564--104037042 Score: 591
Period size: 126 Copynumber: 3.9 Consensus size: 125
104036554 GAATGATTTT
** * * *
104036564 TTTTTCTACAATAGTTTTTGAAAAATTAATTTTGAGAAGACGATTCTG-AAAAATAGTGACAAAA
1 TTTTTCTAC-ATAGTTCCTGAAAAAATAATTTTGAGAAGACGGTTCTGAAAAAATAGTGTCAAAA
* * * * **
104036628 ACGTTTCAAGCAAG-ATACA-TGTCAGCAAAAGTACTGAAAAAAGCTCTCACGTGGATGCTC
65 ACGCTTCAAGC-AGTATGCACTGTCAGCAAAATTACTAAAAAAAAATCTCACGTGGATGCTC
* * * *
104036688 TTTTTCTACATTAGTTTCTGAAAGAATAATTTTGAGAAGACAGTTCTGAAAAAATAATGTCAAAA
1 TTTTTCTACA-TAGTTCCTGAAAAAATAATTTTGAGAAGACGGTTCTGAAAAAATAGTGTCAAAA
*
104036753 ACGCTTCAAGCAGTATGCACTGTCAGCAAAATTACTAAAAAAAAATCTCACGTGGACGCTC
65 ACGCTTCAAGCAGTATGCACTGTCAGCAAAATTACTAAAAAAAAATCTCACGTGGATGCTC
*
104036814 TTTTTCGACAGTAGTTCCTGAAAAAATAATTTTGAGAAGACGGTTCTGAAAAAATAGTGTCAAAA
1 TTTTTCTACA-TAGTTCCTGAAAAAATAATTTTGAGAAGACGGTTCTGAAAAAATAGTGTCAAAA
* * * ** * *
104036879 ACGCTTCAAGTAGGATGCACTGTAAGCAAAATTACTAAAAAAAGCTTTCACATGGATGCTC
65 ACGCTTCAAGCAGTATGCACTGTCAGCAAAATTACTAAAAAAAAATCTCACGTGGATGCTC
104036940 -TTTT-T---T--TTCCTGAAAAAATAATTTTGAGAAGACGGTTCTGAAAAAATAGTGTCAAAAA
1 TTTTTCTACATAGTTCCTGAAAAAATAATTTTGAGAAGACGGTTCTGAAAAAATAGTGTCAAAAA
* * * * *
104036998 CACTTCAAGCAGTATGCACTATCAGCAAAGTTACTGAAGAAAAAT
66 CGCTTCAAGCAGTATGCACTGTCAGCAAAATTACTAAAAAAAAAT
104037043 TCCACATGAA
Statistics
Matches: 312, Mismatches: 39, Indels: 14
0.85 0.11 0.04
Matches are distributed among these distances:
118 87 0.28
120 1 0.00
123 1 0.00
124 43 0.14
125 32 0.10
126 148 0.47
ACGTcount: A:0.40, C:0.15, G:0.16, T:0.29
Consensus pattern (125 bp):
TTTTTCTACATAGTTCCTGAAAAAATAATTTTGAGAAGACGGTTCTGAAAAAATAGTGTCAAAAA
CGCTTCAAGCAGTATGCACTGTCAGCAAAATTACTAAAAAAAAATCTCACGTGGATGCTC
Found at i:104037017 original size:244 final size:246
Alignment explanation
Indices: 104036564--104037074 Score: 654
Period size: 244 Copynumber: 2.1 Consensus size: 246
104036554 GAATGATTTT
* ** *
104036564 TTTTTCTACAATAGTTTTTGAAAAATTAATTTTGAGAAGACGATTCTGAAAAATAGTGACAAAAA
1 TTTTTCGACAATAGTTCCTGAAAAAATAATTTTGAGAAGACGATTCTGAAAAATAGTGACAAAAA
* * * *
104036629 CGTTTCAAGCAAGATACATGTCAGCAAAAGTACTGAAAAAAGCTCTCACGTGGATGCTCTTTTTC
66 CGCTTCAAGCAAGATACATGTAAGCAAAAGTACTAAAAAAAGCTCTCACATGGATGCTC-TTTTC
* * *
104036694 TACATTAGTTTCTGAAAGAATAATTTTGAGAAGACAGTTCTGAAAAAATAATGTCAAAAACGCTT
130 T--ATTA-TTCCTGAAAAAATAATTTTGAGAAGACAGTTCTGAAAAAATAATGTCAAAAACACTT
*
104036759 CAAGCAGTATGCACTGTCAGCAAAATTACTAAAAAAAAATCTCACGTGGACGCTC
192 CAAGCAGTATGCACTATCAGCAAAATTACTAAAAAAAAATCTCACGTGGACGCTC
* * *
104036814 TTTTTCGACAGTAGTTCCTGAAAAAATAATTTTGAGAAGACGGTTCTGAAAAAATAGTGTCAAAA
1 TTTTTCGACAATAGTTCCTGAAAAAATAATTTTGAGAAGACGATTCTG-AAAAATAGTGACAAAA
* * * * *
104036879 ACGCTTCAAGTAGGATGCACTGTAAGCAAAATTACTAAAAAAAGCTTTCACATGGATGCTC-TTT
65 ACGCTTCAAGCAAGATACA-TGTAAGCAAAAGTACTAAAAAAAGCTCTCACATGGATGCTCTTTT
* *
104036943 -T-TT-TTCCTGAAAAAATAATTTTGAGAAGACGGTTCTGAAAAAATAGTGTCAAAAACACTTCA
129 CTATTATTCCTGAAAAAATAATTTTGAGAAGACAGTTCTGAAAAAATAATGTCAAAAACACTTCA
* * * * * *
104037005 AGCAGTATGCACTATCAGCAAAGTTACTGAAGAAAAAT-TCCACATGAACGCTT
194 AGCAGTATGCACTATCAGCAAAATTACTAAAAAAAAATCT-CACGTGGACGCTC
* *
104037058 TTTTTCTATAATAGTTC
1 TTTTTCGACAATAGTTC
104037075 TTGCTTGGCC
Statistics
Matches: 227, Mismatches: 31, Indels: 12
0.84 0.11 0.04
Matches are distributed among these distances:
243 1 0.00
244 112 0.49
246 2 0.01
249 1 0.00
250 45 0.20
251 30 0.13
252 36 0.16
ACGTcount: A:0.39, C:0.15, G:0.16, T:0.30
Consensus pattern (246 bp):
TTTTTCGACAATAGTTCCTGAAAAAATAATTTTGAGAAGACGATTCTGAAAAATAGTGACAAAAA
CGCTTCAAGCAAGATACATGTAAGCAAAAGTACTAAAAAAAGCTCTCACATGGATGCTCTTTTCT
ATTATTCCTGAAAAAATAATTTTGAGAAGACAGTTCTGAAAAAATAATGTCAAAAACACTTCAAG
CAGTATGCACTATCAGCAAAATTACTAAAAAAAAATCTCACGTGGACGCTC
Found at i:104040646 original size:18 final size:18
Alignment explanation
Indices: 104040605--104040646 Score: 52
Period size: 18 Copynumber: 2.4 Consensus size: 18
104040595 ATTGGGAAAA
*
104040605 AGAA-ACATATAAGGGTT
1 AGAATACATATAAGGGCT
104040622 A-AGATACATATAAGGGCT
1 AGA-ATACATATAAGGGCT
104040640 AGAATAC
1 AGAATAC
104040647 GCACCTGGCA
Statistics
Matches: 21, Mismatches: 1, Indels: 5
0.78 0.04 0.19
Matches are distributed among these distances:
16 1 0.05
17 2 0.10
18 17 0.81
19 1 0.05
ACGTcount: A:0.48, C:0.10, G:0.21, T:0.21
Consensus pattern (18 bp):
AGAATACATATAAGGGCT
Found at i:104043852 original size:7 final size:7
Alignment explanation
Indices: 104043842--104043866 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
104043832 TCTAAAGTAT
104043842 AAAAATA
1 AAAAATA
104043849 AAAAATA
1 AAAAATA
104043856 AAAAATA
1 AAAAATA
104043863 AAAA
1 AAAA
104043867 CAGCTCCAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.88, C:0.00, G:0.00, T:0.12
Consensus pattern (7 bp):
AAAAATA
Found at i:104047912 original size:2 final size:2
Alignment explanation
Indices: 104047905--104047931 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
104047895 AATAAAAATA
104047905 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A
104047932 AAAGGTTTAC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:104049059 original size:3 final size:3
Alignment explanation
Indices: 104049051--104049080 Score: 60
Period size: 3 Copynumber: 10.0 Consensus size: 3
104049041 AATTGGTCCA
104049051 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
104049081 TAAAAAATTA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
ATT
Found at i:104051852 original size:27 final size:26
Alignment explanation
Indices: 104051809--104051859 Score: 66
Period size: 27 Copynumber: 1.9 Consensus size: 26
104051799 CAAAATAACT
* *
104051809 ATCCTACTTCGCTAAGCCTACTGGTG
1 ATCCTACTTCGCCAAGCATACTGGTG
*
104051835 ATCCTTACTTTGCCAAGCATACTGG
1 ATCC-TACTTCGCCAAGCATACTGG
104051860 CGAACACCAA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
26 4 0.19
27 17 0.81
ACGTcount: A:0.22, C:0.29, G:0.18, T:0.31
Consensus pattern (26 bp):
ATCCTACTTCGCCAAGCATACTGGTG
Found at i:104054900 original size:19 final size:20
Alignment explanation
Indices: 104054876--104054913 Score: 60
Period size: 19 Copynumber: 1.9 Consensus size: 20
104054866 ATGGTTAGGA
104054876 TTTGAGTTAAGG-TTTAAGT
1 TTTGAGTTAAGGATTTAAGT
*
104054895 TTTGAGTTTAGGATTTAAG
1 TTTGAGTTAAGGATTTAAG
104054914 GTTCGTGGTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 11 0.65
20 6 0.35
ACGTcount: A:0.26, C:0.00, G:0.26, T:0.47
Consensus pattern (20 bp):
TTTGAGTTAAGGATTTAAGT
Found at i:104055083 original size:65 final size:65
Alignment explanation
Indices: 104055009--104055134 Score: 155
Period size: 65 Copynumber: 1.9 Consensus size: 65
104054999 GTTGACATGC
* * * * *
104055009 CATTAAATAATT-GAAAAGGAACCATAAATGATGTAATGGAAAGAATATACAAAATAATTTCTCG
1 CATTAAATAATTAAAAAAAG-ACAATAAATAATGTAATGGAAAGAATACACAAAATAATTTCTCG
104055073 T
65 T
* * * *
104055074 CATTAAATAATTAAAAAAAGACAATAAATAATTTGATGGAAAGAATCCATAAAATAATTTC
1 CATTAAATAATTAAAAAAAGACAATAAATAATGTAATGGAAAGAATACACAAAATAATTTC
104055135 AATTACACCA
Statistics
Matches: 51, Mismatches: 9, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
65 46 0.90
66 5 0.10
ACGTcount: A:0.52, C:0.09, G:0.11, T:0.28
Consensus pattern (65 bp):
CATTAAATAATTAAAAAAAGACAATAAATAATGTAATGGAAAGAATACACAAAATAATTTCTCGT
Found at i:104059484 original size:20 final size:20
Alignment explanation
Indices: 104059459--104059499 Score: 73
Period size: 20 Copynumber: 2.0 Consensus size: 20
104059449 AAACTCTTTG
*
104059459 CCCGATTTCGGTTGCACTAA
1 CCCGATTCCGGTTGCACTAA
104059479 CCCGATTCCGGTTGCACTAA
1 CCCGATTCCGGTTGCACTAA
104059499 C
1 C
104059500 ACTGGGGCTT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.20, C:0.34, G:0.20, T:0.27
Consensus pattern (20 bp):
CCCGATTCCGGTTGCACTAA
Found at i:104064274 original size:46 final size:47
Alignment explanation
Indices: 104064140--104064307 Score: 159
Period size: 46 Copynumber: 3.6 Consensus size: 47
104064130 GTGTCGATGT
* * * *
104064140 CATGTCCCACACATGGTCTTACACT-G-AC-ACGTCTCGTA-GCCGATG
1 CATGTCCCAGACAT-GTCTTACACTAGCTCTACGTCTC-AAGGCCAATG
* * *
104064185 CATGTCCCAGACATGTCTTACACTGGCT-TATGTCTTAAGGCCAATG
1 CATGTCCCAGACATGTCTTACACTAGCTCTACGTCTCAAGGCCAATG
* * *
104064231 CATGTCTCAAACATGTCTTACACTAGCTCT-CGTCTCAATGCCAATGG
1 CATGTCCCAGACATGTCTTACACTAGCTCTACGTCTCAAGGCCAAT-G
*
104064278 CATGTCCCAGACATGGTTTTACACTAGCTC
1 CATGTCCCAGACAT-GTCTTACACTAGCTC
104064308 ATAACAACCC
Statistics
Matches: 101, Mismatches: 15, Indels: 11
0.80 0.12 0.09
Matches are distributed among these distances:
44 10 0.10
45 15 0.15
46 48 0.48
47 14 0.14
48 14 0.14
ACGTcount: A:0.24, C:0.30, G:0.18, T:0.29
Consensus pattern (47 bp):
CATGTCCCAGACATGTCTTACACTAGCTCTACGTCTCAAGGCCAATG
Found at i:104066714 original size:37 final size:37
Alignment explanation
Indices: 104066664--104066738 Score: 150
Period size: 37 Copynumber: 2.0 Consensus size: 37
104066654 AGATTAAAAC
104066664 AAGCAAAAATCTACCGAATCAATGGTAGGATAGTGTG
1 AAGCAAAAATCTACCGAATCAATGGTAGGATAGTGTG
104066701 AAGCAAAAATCTACCGAATCAATGGTAGGATAGTGTG
1 AAGCAAAAATCTACCGAATCAATGGTAGGATAGTGTG
104066738 A
1 A
104066739 GCTTCGAGGT
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.41, C:0.13, G:0.24, T:0.21
Consensus pattern (37 bp):
AAGCAAAAATCTACCGAATCAATGGTAGGATAGTGTG
Found at i:104068104 original size:13 final size:13
Alignment explanation
Indices: 104068086--104068110 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
104068076 CATCACATGG
104068086 CCGTGTCATGCGT
1 CCGTGTCATGCGT
104068099 CCGTGTCATGCG
1 CCGTGTCATGCG
104068111 CGCACGGCCT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.08, C:0.32, G:0.32, T:0.28
Consensus pattern (13 bp):
CCGTGTCATGCGT
Found at i:104074215 original size:18 final size:18
Alignment explanation
Indices: 104074192--104074227 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
104074182 ACAGCCTTTC
104074192 CCTACAAGTTTAGTTCTA
1 CCTACAAGTTTAGTTCTA
104074210 CCTACAAGTTTAGTTCTA
1 CCTACAAGTTTAGTTCTA
104074228 TGTATTTCCA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.28, C:0.22, G:0.11, T:0.39
Consensus pattern (18 bp):
CCTACAAGTTTAGTTCTA
Found at i:104076140 original size:43 final size:42
Alignment explanation
Indices: 104076092--104076254 Score: 152
Period size: 43 Copynumber: 3.8 Consensus size: 42
104076082 ATCAAGATGT
* *
104076092 GATTACATGTAAGACCATCTCTGGGACATTGGCATTGTATTG
1 GATTACATGTAAGACCATATCTGGGACATTGGCATCGTATTG
* *
104076134 AGATTACGTGTAAGACCATGTCTGGGACATTGGCATCGTTAATT-
1 -GATTACATGTAAGACCATATCTGGGACATTGGCATCG-T-ATTG
* * * *
104076178 GATTTCATGTAAGACCCTATCCGGGACAGTGGCATCG-ATATG
1 GATTACATGTAAGACCATATCTGGGACATTGGCATCGTAT-TG
* * * *
104076220 TGATAACATGTAAGACCACATATGGGATA-TGGCAT
1 -GATTACATGTAAGACCATATCTGGGACATTGGCAT
104076255 TGTCCGAGCT
Statistics
Matches: 99, Mismatches: 16, Indels: 11
0.79 0.13 0.09
Matches are distributed among these distances:
40 2 0.02
41 1 0.01
42 6 0.06
43 86 0.87
44 1 0.01
45 3 0.03
ACGTcount: A:0.29, C:0.17, G:0.25, T:0.29
Consensus pattern (42 bp):
GATTACATGTAAGACCATATCTGGGACATTGGCATCGTATTG
Found at i:104076246 original size:86 final size:85
Alignment explanation
Indices: 104076091--104076254 Score: 186
Period size: 86 Copynumber: 1.9 Consensus size: 85
104076081 TATCAAGATG
* * * * * * ** *
104076091 TGATTACATGTAAGACCATCTCTGGGACATTGGCATTGTATTGAGATTACGTGTAAGACCATGTC
1 TGATTACATGTAAGACCATATCCGGGACAGTGGCATCGTATTGAGATAACATGTAAGACCACATA
104076156 TGGGACATTGGCATCGTTAAT
66 TGGGACA-TGGCATCGTTAAT
* * *
104076177 TGATTTCATGTAAGACCCTATCCGGGACAGTGGCATCG-ATATGTGATAACATGTAAGACCACAT
1 TGATTACATGTAAGACCATATCCGGGACAGTGGCATCGTAT-TGAGATAACATGTAAGACCACAT
*
104076241 ATGGGATATGGCAT
65 ATGGGACATGGCAT
104076255 TGTCCGAGCT
Statistics
Matches: 64, Mismatches: 13, Indels: 3
0.80 0.16 0.04
Matches are distributed among these distances:
85 8 0.12
86 56 0.88
ACGTcount: A:0.29, C:0.17, G:0.24, T:0.30
Consensus pattern (85 bp):
TGATTACATGTAAGACCATATCCGGGACAGTGGCATCGTATTGAGATAACATGTAAGACCACATA
TGGGACATGGCATCGTTAAT
Found at i:104086983 original size:266 final size:267
Alignment explanation
Indices: 104086474--104086998 Score: 743
Period size: 266 Copynumber: 2.0 Consensus size: 267
104086464 AACTAAACTG
* * * *
104086474 AAATTCGTGTCCATAATGTGTGAAAAATGAGCCTATTGATTGTGCGGGCCATAACTCCCATTAAC
1 AAATTCGTGTCCATAATGTGTGAAAAATGAGCCCATTGATTGTGCGGACCATAAATCCCACTAAC
* * * * *
104086539 TCATGTTAATTCTCATCCAGAGTTGATGTTGTAACACATCAGTACCAGTGTCGTGACATAGGAGT
66 TCATGTTAATTCGCATCCACAGTCGATGTCGTAACACATCAGTACCAGTGCCGTGACATAGGAGT
104086604 CAGTATATTCCTCTCGAGATATCTTTAAGGGTATGTTGCAACACCTTTCATCAGTGTTGCAACGT
131 CAGTATATTCCTCTCGAGATATCTTTAAGGGTATGTTGCAACACCTTTCATCAGTGTTGCAACGT
* * * *
104086669 TGAATGCGGTCTGAAGATTTTTCCATTCTACTCCCTATGTTGCGATATCTAACCCTCCATGTTTC
196 TGAATGCAGTCTGAAGATTTCTCCATTCTACTCCCTATGTTACGATATCAAACCCTCCATGTTTC
104086734 AACACAA
261 AACACAA
*
104086741 AAATTCGTGTCCATAATGTG-GACAAATGAGCCCATTGATTGTGCGGACCA-AAATGCCCACTAA
1 AAATTCGTGTCCATAATGTGTGAAAAATGAGCCCATTGATTGTGCGGACCATAAAT-CCCACTAA
* * *
104086804 CTCGTGTTAATTCGCATCCACAGTCGATGTCGTGACACATTAGTACCTA-TGCCGTGACATAGGA
65 CTCATGTTAATTCGCATCCACAGTCGATGTCGTAACACATCAGTACC-AGTGCCGTGACATAGGA
* * * * ** * *
104086868 GTCAGTATATTCCTCTTGGGATATCTTTAGGGGTATGTTGCGATGCCTTTTATCAGTGTTGCGAC
129 GTCAGTATATTCCTCTCGAGATATCTTTAAGGGTATGTTGCAACACCTTTCATCAGTGTTGCAAC
* * *
104086933 GTTGAATGCAGTCTCG-AGATTTCTCTATTCTACTCCCTCTGTTACGATATCAAATCCTCCATGT
194 GTTGAATGCAGTCT-GAAGATTTCTCCATTCTACTCCCTATGTTACGATATCAAACCCTCCATGT
104086997 TT
258 TT
104086999 TGACATAGTG
Statistics
Matches: 227, Mismatches: 28, Indels: 7
0.87 0.11 0.03
Matches are distributed among these distances:
265 3 0.01
266 202 0.89
267 22 0.10
ACGTcount: A:0.26, C:0.22, G:0.19, T:0.33
Consensus pattern (267 bp):
AAATTCGTGTCCATAATGTGTGAAAAATGAGCCCATTGATTGTGCGGACCATAAATCCCACTAAC
TCATGTTAATTCGCATCCACAGTCGATGTCGTAACACATCAGTACCAGTGCCGTGACATAGGAGT
CAGTATATTCCTCTCGAGATATCTTTAAGGGTATGTTGCAACACCTTTCATCAGTGTTGCAACGT
TGAATGCAGTCTGAAGATTTCTCCATTCTACTCCCTATGTTACGATATCAAACCCTCCATGTTTC
AACACAA
Found at i:104088475 original size:43 final size:42
Alignment explanation
Indices: 104088373--104088485 Score: 115
Period size: 43 Copynumber: 2.7 Consensus size: 42
104088363 ATAATTTATG
* * * *
104088373 TGTAAGACCATGTCTGGGGCA-TCGGCATCGTATTTGATTTCG
1 TGTAAGACCACGTCTGGGACAGT-GGCATCGTATTTGATTACA
*
104088415 TGTAAGACC-CGGACTGGGACAGTGGCATCGATATTTGATTACA
1 TGTAAGACCAC-GTCTGGGACAGTGGCATCG-TATTTGATTACA
*
104088458 TGTATGACCACGTCTGGGAC-GTTGGCAT
1 TGTAAGACCACGTCTGGGACAG-TGGCAT
104088486 TGTACGAGCT
Statistics
Matches: 59, Mismatches: 7, Indels: 9
0.79 0.09 0.12
Matches are distributed among these distances:
42 25 0.42
43 33 0.56
44 1 0.02
ACGTcount: A:0.22, C:0.19, G:0.29, T:0.29
Consensus pattern (42 bp):
TGTAAGACCACGTCTGGGACAGTGGCATCGTATTTGATTACA
Found at i:104093577 original size:14 final size:14
Alignment explanation
Indices: 104093558--104093584 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
104093548 CTGAGAAGAT
104093558 AAAAATAAATACTC
1 AAAAATAAATACTC
104093572 AAAAATAAATACT
1 AAAAATAAATACT
104093585 TAAGAAAATA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.67, C:0.11, G:0.00, T:0.22
Consensus pattern (14 bp):
AAAAATAAATACTC
Found at i:104097111 original size:35 final size:36
Alignment explanation
Indices: 104097057--104097127 Score: 99
Period size: 35 Copynumber: 2.0 Consensus size: 36
104097047 AGTGTGGGCT
* *
104097057 TAAACCAATTAAACAAAAACACATAACTA-AAAAAA
1 TAAACCAATTAAACAAAAACAAAGAACTAGAAAAAA
* *
104097092 TAAACCAATTAGACCAAAACAAAGAACTAGAAAAAA
1 TAAACCAATTAAACAAAAACAAAGAACTAGAAAAAA
104097128 GTTTCTTTTT
Statistics
Matches: 31, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
35 25 0.81
36 6 0.19
ACGTcount: A:0.66, C:0.17, G:0.04, T:0.13
Consensus pattern (36 bp):
TAAACCAATTAAACAAAAACAAAGAACTAGAAAAAA
Found at i:104097651 original size:27 final size:25
Alignment explanation
Indices: 104097588--104097661 Score: 87
Period size: 26 Copynumber: 2.9 Consensus size: 25
104097578 TCTCTCGCCT
*
104097588 CAATTTTACTCTCG-TAAAATTTGGA
1 CAATTTTAC-CCCGATAAAATTTGGA
* *
104097613 CGATTTTACCCCTGATAAAATTTTGA
1 CAATTTTACCCC-GATAAAATTTGGA
104097639 CAATTTTATCCCCGATAAAATTT
1 CAATTTTA-CCCCGATAAAATTT
104097662 CGAGAAAATC
Statistics
Matches: 42, Mismatches: 4, Indels: 5
0.82 0.08 0.10
Matches are distributed among these distances:
24 2 0.05
25 9 0.21
26 27 0.64
27 4 0.10
ACGTcount: A:0.32, C:0.19, G:0.09, T:0.39
Consensus pattern (25 bp):
CAATTTTACCCCGATAAAATTTGGA
Found at i:104107940 original size:16 final size:16
Alignment explanation
Indices: 104107911--104107944 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
104107901 GTCTTGATTC
*
104107911 TAAAAATTTCAAAATT
1 TAAAAATTTAAAAATT
*
104107927 TAAAATTTTAAAAATT
1 TAAAAATTTAAAAATT
104107943 TA
1 TA
104107945 TATAAAAATT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.56, C:0.03, G:0.00, T:0.41
Consensus pattern (16 bp):
TAAAAATTTAAAAATT
Found at i:104107996 original size:22 final size:25
Alignment explanation
Indices: 104107962--104108009 Score: 66
Period size: 23 Copynumber: 2.0 Consensus size: 25
104107952 ATTATTTTTT
104107962 AAAAAATACATAAC-AT-TTTATAA
1 AAAAAATACATAACAATATTTATAA
*
104107985 AAAAAAT-TATAACAATATTTATAA
1 AAAAAATACATAACAATATTTATAA
104108009 A
1 A
104108010 TAAACGAATA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
22 5 0.23
23 9 0.41
24 8 0.36
ACGTcount: A:0.62, C:0.06, G:0.00, T:0.31
Consensus pattern (25 bp):
AAAAAATACATAACAATATTTATAA
Found at i:104110934 original size:54 final size:54
Alignment explanation
Indices: 104110849--104110981 Score: 248
Period size: 54 Copynumber: 2.5 Consensus size: 54
104110839 GTCGTTATAA
*
104110849 GGGATTTAGCCTGGACTGGTAATCCCAACATCATCGTATGAGTTCATGATATGG
1 GGGATTTAGCCTGGACTGGTAATCCCAACATCACCGTATGAGTTCATGATATGG
*
104110903 GGGATTTAGCCTGGACTGGTAATCCCGACATCACCGTATGAGTTCATGATATGG
1 GGGATTTAGCCTGGACTGGTAATCCCAACATCACCGTATGAGTTCATGATATGG
104110957 GGGATTTAGCCTGGACTGGTAATCC
1 GGGATTTAGCCTGGACTGGTAATCC
104110982 AGCCATGAGA
Statistics
Matches: 77, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
54 77 1.00
ACGTcount: A:0.24, C:0.20, G:0.28, T:0.29
Consensus pattern (54 bp):
GGGATTTAGCCTGGACTGGTAATCCCAACATCACCGTATGAGTTCATGATATGG
Found at i:104119018 original size:22 final size:23
Alignment explanation
Indices: 104118987--104119049 Score: 67
Period size: 22 Copynumber: 2.8 Consensus size: 23
104118977 ATATAATATC
104118987 CAAATAATAACAACAAAATAGTAG
1 CAAAT-ATAACAACAAAATAGTAG
* * *
104119011 -AAATATAATAGCAAAATGGTAG
1 CAAATATAACAACAAAATAGTAG
*
104119033 CAAA-ACAACAACAAAAT
1 CAAATATAACAACAAAAT
104119050 GACAACAAAC
Statistics
Matches: 32, Mismatches: 6, Indels: 4
0.76 0.14 0.10
Matches are distributed among these distances:
22 25 0.78
23 7 0.22
ACGTcount: A:0.62, C:0.13, G:0.10, T:0.16
Consensus pattern (23 bp):
CAAATATAACAACAAAATAGTAG
Found at i:104126463 original size:36 final size:31
Alignment explanation
Indices: 104126388--104126453 Score: 123
Period size: 31 Copynumber: 2.1 Consensus size: 31
104126378 TTTTGCAGTT
*
104126388 ATCTCATATATCTGCTCTGCTTTTTTAATCG
1 ATCTCATATATCTGCTCTGCTTTTTTAATCA
104126419 ATCTCATATATCTGCTCTGCTTTTTTAATCA
1 ATCTCATATATCTGCTCTGCTTTTTTAATCA
104126450 ATCT
1 ATCT
104126454 TTGTGCATAT
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 34 1.00
ACGTcount: A:0.21, C:0.23, G:0.08, T:0.48
Consensus pattern (31 bp):
ATCTCATATATCTGCTCTGCTTTTTTAATCA
Found at i:104126686 original size:20 final size:20
Alignment explanation
Indices: 104126661--104126700 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
104126651 GGGCCCAACA
104126661 ACCTAGGTCTAAATTGACTT
1 ACCTAGGTCTAAATTGACTT
104126681 ACCTAGGTCTAAATTGACTT
1 ACCTAGGTCTAAATTGACTT
104126701 GGCTGGATTT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.30, C:0.20, G:0.15, T:0.35
Consensus pattern (20 bp):
ACCTAGGTCTAAATTGACTT
Found at i:104126813 original size:14 final size:14
Alignment explanation
Indices: 104126794--104126854 Score: 72
Period size: 14 Copynumber: 4.5 Consensus size: 14
104126784 GCATCTCTAT
*
104126794 TTTTTCTCTTATTC
1 TTTTTCTCTTCTTC
104126808 TTTTTCTCTTC-TC
1 TTTTTCTCTTCTTC
*
104126821 TTTTT-TTTTCTTC
1 TTTTTCTCTTCTTC
* *
104126834 TTTTCCCCTTCTTC
1 TTTTTCTCTTCTTC
104126848 TTTTTCT
1 TTTTTCT
104126855 AATACTTAAT
Statistics
Matches: 38, Mismatches: 7, Indels: 4
0.78 0.14 0.08
Matches are distributed among these distances:
12 4 0.11
13 13 0.34
14 21 0.55
ACGTcount: A:0.02, C:0.26, G:0.00, T:0.72
Consensus pattern (14 bp):
TTTTTCTCTTCTTC
Found at i:104126821 original size:19 final size:17
Alignment explanation
Indices: 104126797--104126831 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 17
104126787 TCTCTATTTT
104126797 TTCTCTTATTCTTTTTCTC
1 TTCTCTT-TT-TTTTTCTC
104126816 TTCTCTTTTTTTTTCT
1 TTCTCTTTTTTTTTCT
104126832 TCTTTTCCCC
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 7 0.44
18 2 0.12
19 7 0.44
ACGTcount: A:0.03, C:0.23, G:0.00, T:0.74
Consensus pattern (17 bp):
TTCTCTTTTTTTTTCTC
Found at i:104127609 original size:26 final size:26
Alignment explanation
Indices: 104127573--104127625 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
104127563 AATTCACGAT
104127573 CTAGTTTGGTTGAGACATGGATGCGC
1 CTAGTTTGGTTGAGACATGGATGCGC
104127599 CTAGTTTGGTTGAGACATGGATGCGC
1 CTAGTTTGGTTGAGACATGGATGCGC
104127625 C
1 C
104127626 GTGACCATAT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.19, C:0.17, G:0.34, T:0.30
Consensus pattern (26 bp):
CTAGTTTGGTTGAGACATGGATGCGC
Found at i:104130629 original size:46 final size:47
Alignment explanation
Indices: 104130573--104130667 Score: 183
Period size: 46 Copynumber: 2.0 Consensus size: 47
104130563 AAAGAGAATG
104130573 ATACAACAAGAGTTTCGACTACGTCTATTTAAAGGTTAAAAAA-CAT
1 ATACAACAAGAGTTTCGACTACGTCTATTTAAAGGTTAAAAAATCAT
104130619 ATACAACAAGAGTTTCGACTACGTCTATTTAAAGGTTAAAAAATCAT
1 ATACAACAAGAGTTTCGACTACGTCTATTTAAAGGTTAAAAAATCAT
104130666 AT
1 AT
104130668 TCTAATCAAT
Statistics
Matches: 48, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
46 43 0.90
47 5 0.10
ACGTcount: A:0.43, C:0.15, G:0.13, T:0.29
Consensus pattern (47 bp):
ATACAACAAGAGTTTCGACTACGTCTATTTAAAGGTTAAAAAATCAT
Found at i:104130896 original size:14 final size:14
Alignment explanation
Indices: 104130858--104130897 Score: 52
Period size: 14 Copynumber: 3.1 Consensus size: 14
104130848 AATCAATGTC
104130858 AAATATATTATGCT
1 AAATATATTATGCT
104130872 -AATA-A--ATGCT
1 AAATATATTATGCT
104130882 AAATATATTATGCT
1 AAATATATTATGCT
104130896 AA
1 AA
104130898 TAAATACTAG
Statistics
Matches: 22, Mismatches: 0, Indels: 8
0.73 0.00 0.27
Matches are distributed among these distances:
10 5 0.23
11 4 0.18
12 2 0.09
13 4 0.18
14 7 0.32
ACGTcount: A:0.47, C:0.07, G:0.07, T:0.38
Consensus pattern (14 bp):
AAATATATTATGCT
Found at i:104132535 original size:19 final size:19
Alignment explanation
Indices: 104132513--104132551 Score: 69
Period size: 19 Copynumber: 2.1 Consensus size: 19
104132503 GTACACTTGT
104132513 TATATAATTATTAATTTAC
1 TATATAATTATTAATTTAC
*
104132532 TATATAATTATTTATTTAC
1 TATATAATTATTAATTTAC
104132551 T
1 T
104132552 TAATATTAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.38, C:0.05, G:0.00, T:0.56
Consensus pattern (19 bp):
TATATAATTATTAATTTAC
Found at i:104132655 original size:14 final size:15
Alignment explanation
Indices: 104132634--104132668 Score: 63
Period size: 14 Copynumber: 2.4 Consensus size: 15
104132624 AAAGAATTAA
104132634 AGAAACAAAAGAAAC
1 AGAAACAAAAGAAAC
104132649 A-AAACAAAAGAAAC
1 AGAAACAAAAGAAAC
104132663 AGAAAC
1 AGAAAC
104132669 GAAGCAGAGA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
14 14 0.74
15 5 0.26
ACGTcount: A:0.74, C:0.14, G:0.11, T:0.00
Consensus pattern (15 bp):
AGAAACAAAAGAAAC
Found at i:104133681 original size:39 final size:40
Alignment explanation
Indices: 104133572--104133681 Score: 91
Period size: 38 Copynumber: 2.8 Consensus size: 40
104133562 ACCTCGAGTT
* ***
104133572 GATGAGACACTGGGTGTC-ACTATATTTCTTCGGATAGATTT
1 GATGAGACACTGGGTGTCAAC--TATTACTTCGGATAGAGCC
** ** *
104133613 GATGAGGTACTGGGTACCAACT-TTACTTCGGCTAG-GCC
1 GATGAGACACTGGGTGTCAACTATTACTTCGGATAGAGCC
*
104133651 GATGAGACACTGGGTGTCAACTATTGCTTCG
1 GATGAGACACTGGGTGTCAACTATTACTTCG
104133682 AACTATCCGA
Statistics
Matches: 53, Mismatches: 14, Indels: 6
0.73 0.19 0.08
Matches are distributed among these distances:
38 18 0.34
39 18 0.34
40 1 0.02
41 14 0.26
42 2 0.04
ACGTcount: A:0.23, C:0.19, G:0.27, T:0.31
Consensus pattern (40 bp):
GATGAGACACTGGGTGTCAACTATTACTTCGGATAGAGCC
Found at i:104141246 original size:39 final size:40
Alignment explanation
Indices: 104141136--104141246 Score: 102
Period size: 38 Copynumber: 2.8 Consensus size: 40
104141126 GACCTCGAGT
* **
104141136 CGATGAGACACTGGGTGTC-ACTATATTTCTTCGGATAGATT
1 CGATGAGACACTGGGTGTCAAC--TATTACTTCGGATAGAGC
** ** *
104141177 CGATGAGGTACTGGGTACCAACT-TTACTTCGGCTAG-GC
1 CGATGAGACACTGGGTGTCAACTATTACTTCGGATAGAGC
*
104141215 CGATGAGACACTGGGTGTCAACTATTGCTTCG
1 CGATGAGACACTGGGTGTCAACTATTACTTCG
104141247 AACTATCCGA
Statistics
Matches: 55, Mismatches: 13, Indels: 6
0.74 0.18 0.08
Matches are distributed among these distances:
38 19 0.35
39 18 0.33
40 1 0.02
41 15 0.27
42 2 0.04
ACGTcount: A:0.23, C:0.21, G:0.27, T:0.30
Consensus pattern (40 bp):
CGATGAGACACTGGGTGTCAACTATTACTTCGGATAGAGC
Found at i:104145733 original size:24 final size:24
Alignment explanation
Indices: 104145682--104145738 Score: 69
Period size: 24 Copynumber: 2.4 Consensus size: 24
104145672 GAACCTAATT
* * *
104145682 CTAATCAATGTCAAATATATCGTG
1 CTAATAAATGTCAAATATATCATA
* *
104145706 CTAATAAATGTTAAATATATTATA
1 CTAATAAATGTCAAATATATCATA
104145730 CTAATAAAT
1 CTAATAAAT
104145739 ACTAAATCTT
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
24 28 1.00
ACGTcount: A:0.46, C:0.11, G:0.07, T:0.37
Consensus pattern (24 bp):
CTAATAAATGTCAAATATATCATA
Done.