Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A06
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 115140250
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2234201 characters in sequence are not A, C, G, or T
File 312 of 345
Found at i:105499724 original size:43 final size:42
Alignment explanation
Indices: 105499614--105499725 Score: 100
Period size: 43 Copynumber: 2.6 Consensus size: 42
105499604 TTACATATCG
* * * * *
105499614 ATGCCACTGTCCCAGACAGGGTCTTACACGAAATCGATTAACG
1 ATGCCAATGT-CCAGACACGGTCTTACACGAAATCCAATAACA
* * *
105499657 ATGCCAATGTCCTAGATACAGTCTTACACGTAATCTCAAT-ACA
1 ATGCCAATGTCC-AGACACGGTCTTACACGAAATC-CAATAACA
*
105499700 ATGCCAATGTACCAGACATGGTCTTA
1 ATGCCAATGT-CCAGACACGGTCTTA
105499726 TATGCAATTA
Statistics
Matches: 55, Mismatches: 11, Indels: 6
0.76 0.15 0.08
Matches are distributed among these distances:
42 2 0.04
43 49 0.89
44 4 0.07
ACGTcount: A:0.32, C:0.26, G:0.17, T:0.25
Consensus pattern (42 bp):
ATGCCAATGTCCAGACACGGTCTTACACGAAATCCAATAACA
Found at i:105513824 original size:6 final size:6
Alignment explanation
Indices: 105513813--105513853 Score: 57
Period size: 6 Copynumber: 7.0 Consensus size: 6
105513803 TATTTTACTA
* *
105513813 TTATTT TTATTT TTATTT TTATTT CTATTT CTA-TT TTATTT
1 TTATTT TTATTT TTATTT TTATTT TTATTT TTATTT TTATTT
105513854 AAAATTCCAT
Statistics
Matches: 32, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
5 4 0.12
6 28 0.88
ACGTcount: A:0.17, C:0.05, G:0.00, T:0.78
Consensus pattern (6 bp):
TTATTT
Found at i:105517979 original size:30 final size:30
Alignment explanation
Indices: 105517943--105518003 Score: 113
Period size: 30 Copynumber: 2.0 Consensus size: 30
105517933 GTATCGAGAT
105517943 AATCGAATGTCACATCCCATAAGTTAGGAC
1 AATCGAATGTCACATCCCATAAGTTAGGAC
*
105517973 AATCGAATGTCACATCCCGTAAGTTAGGAC
1 AATCGAATGTCACATCCCATAAGTTAGGAC
105518003 A
1 A
105518004 CGACATTTGA
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.36, C:0.23, G:0.18, T:0.23
Consensus pattern (30 bp):
AATCGAATGTCACATCCCATAAGTTAGGAC
Found at i:105518521 original size:13 final size:13
Alignment explanation
Indices: 105518503--105518546 Score: 54
Period size: 13 Copynumber: 3.4 Consensus size: 13
105518493 TAATATAACA
105518503 AATAAAATAAAAT
1 AATAAAATAAAAT
105518516 AATAAAA-AATAAT
1 AATAAAATAA-AAT
* *
105518529 AAAAAAATGAAAT
1 AATAAAATAAAAT
105518542 AATAA
1 AATAA
105518547 TGACAATAGG
Statistics
Matches: 26, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
12 2 0.08
13 23 0.88
14 1 0.04
ACGTcount: A:0.77, C:0.00, G:0.02, T:0.20
Consensus pattern (13 bp):
AATAAAATAAAAT
Found at i:105520311 original size:15 final size:15
Alignment explanation
Indices: 105520291--105520320 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
105520281 TTGTTGTAAA
*
105520291 TGGACCCTTAATATT
1 TGGACCATTAATATT
105520306 TGGACCATTAATATT
1 TGGACCATTAATATT
105520321 ATTTTGGTTT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.30, C:0.17, G:0.13, T:0.40
Consensus pattern (15 bp):
TGGACCATTAATATT
Found at i:105520669 original size:43 final size:43
Alignment explanation
Indices: 105520613--105520839 Score: 292
Period size: 43 Copynumber: 5.3 Consensus size: 43
105520603 CTGTATTTCG
* * *
105520613 CCAATAGGTGAATTGTATAAAGTATGCTTGTGTATAGTATTCG
1 CCAATGGGCGAATTGTATAAAGTATGCTTGTGTATAGTATTCA
* *
105520656 CCAATGGGCGAATTGTATAAAGTTTGCTTATGTATAGTATTCA
1 CCAATGGGCGAATTGTATAAAGTATGCTTGTGTATAGTATTCA
* * * * * *
105520699 CCAATTGGCAAACTGTATACAGTCTGTTTGTGTATAGTATTCA
1 CCAATGGGCGAATTGTATAAAGTATGCTTGTGTATAGTATTCA
* *
105520742 CCAATAGGCGAATTGTATAAAGTATGCTTGTATATAGTATTCA
1 CCAATGGGCGAATTGTATAAAGTATGCTTGTGTATAGTATTCA
** * **
105520785 TTAATGGGCGAATTGTATAAAGTCTGCTTGTGTATAGTATTTG
1 CCAATGGGCGAATTGTATAAAGTATGCTTGTGTATAGTATTCA
105520828 CCAATGGGCGAA
1 CCAATGGGCGAA
105520840 CTATGTGTTC
Statistics
Matches: 156, Mismatches: 28, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
43 156 1.00
ACGTcount: A:0.30, C:0.12, G:0.22, T:0.36
Consensus pattern (43 bp):
CCAATGGGCGAATTGTATAAAGTATGCTTGTGTATAGTATTCA
Found at i:105525350 original size:13 final size:13
Alignment explanation
Indices: 105525332--105525386 Score: 71
Period size: 13 Copynumber: 4.5 Consensus size: 13
105525322 AGATTTTTCT
105525332 TAAATATTATTAC
1 TAAATATTATTAC
*
105525345 TAAATA--ATT-T
1 TAAATATTATTAC
105525355 TAAATATTATTAC
1 TAAATATTATTAC
*
105525368 TAAATATTATCAC
1 TAAATATTATTAC
105525381 TAAATA
1 TAAATA
105525387 ATTCTAAATT
Statistics
Matches: 36, Mismatches: 3, Indels: 6
0.80 0.07 0.13
Matches are distributed among these distances:
10 6 0.17
11 3 0.08
12 3 0.08
13 24 0.67
ACGTcount: A:0.49, C:0.07, G:0.00, T:0.44
Consensus pattern (13 bp):
TAAATATTATTAC
Found at i:105525539 original size:7 final size:8
Alignment explanation
Indices: 105525520--105525560 Score: 59
Period size: 8 Copynumber: 5.4 Consensus size: 8
105525510 TTATCCAGTC
*
105525520 ATCTTTGA
1 ATCTTTCA
105525528 ATCTTT-A
1 ATCTTTCA
105525535 ATCTTTCA
1 ATCTTTCA
105525543 ATC-TTCA
1 ATCTTTCA
105525550 ATCTTTCA
1 ATCTTTCA
105525558 ATC
1 ATC
105525561 AAGTCCTCCT
Statistics
Matches: 31, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
7 14 0.45
8 17 0.55
ACGTcount: A:0.27, C:0.22, G:0.02, T:0.49
Consensus pattern (8 bp):
ATCTTTCA
Found at i:105525540 original size:15 final size:15
Alignment explanation
Indices: 105525520--105525560 Score: 64
Period size: 15 Copynumber: 2.7 Consensus size: 15
105525510 TTATCCAGTC
* *
105525520 ATCTTTGAATCTTTA
1 ATCTTTCAATCTTCA
105525535 ATCTTTCAATCTTCA
1 ATCTTTCAATCTTCA
105525550 ATCTTTCAATC
1 ATCTTTCAATC
105525561 AAGTCCTCCT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
15 24 1.00
ACGTcount: A:0.27, C:0.22, G:0.02, T:0.49
Consensus pattern (15 bp):
ATCTTTCAATCTTCA
Found at i:105527229 original size:57 final size:57
Alignment explanation
Indices: 105527165--105527333 Score: 155
Period size: 57 Copynumber: 3.1 Consensus size: 57
105527155 AGATAGATAG
105527165 GATTTAGCCCGAACAGGTAATCCTGATTAAGCTCTTATGAGCATATGTTGGACACAA
1 GATTTAGCCCGAACAGGTAATCCTGATTAAGCTCTTATGAGCATATGTTGGACACAA
* * * * * *
105527222 GATTTA----G--C---TAATCCTAATATAAGCCCTCT-TGAACATATG--AGATAGATA
1 GATTTAGCCCGAACAGGTAATCCTGAT-TAAGCTCT-TATGAGCATATGTTGGACACA-A
*
105527270 GAATTTAGCCCGAACAGGTAATCCTGATTAAACTCTTATGAGCATATGTTGGACACAA
1 G-ATTTAGCCCGAACAGGTAATCCTGATTAAGCTCTTATGAGCATATGTTGGACACAA
105527328 GATTTA
1 GATTTA
105527334 TCTTGGACAA
Statistics
Matches: 83, Mismatches: 13, Indels: 32
0.65 0.10 0.25
Matches are distributed among these distances:
47 4 0.05
48 11 0.13
49 21 0.25
50 1 0.01
51 1 0.01
53 2 0.02
55 1 0.01
56 1 0.01
57 26 0.31
58 11 0.13
59 4 0.05
ACGTcount: A:0.34, C:0.18, G:0.18, T:0.30
Consensus pattern (57 bp):
GATTTAGCCCGAACAGGTAATCCTGATTAAGCTCTTATGAGCATATGTTGGACACAA
Found at i:105527309 original size:106 final size:106
Alignment explanation
Indices: 105527124--105527333 Score: 384
Period size: 106 Copynumber: 2.0 Consensus size: 106
105527114 CCTAGACTGG
* * *
105527124 TAATCCTAATATAAGCCCTTTTGAATATATGAGATAGATAGGATTTAGCCCGAACAGGTAATCCT
1 TAATCCTAATATAAGCCCTCTTGAACATATGAGATAGATAGAATTTAGCCCGAACAGGTAATCCT
*
105527189 GATTAAGCTCTTATGAGCATATGTTGGACACAAGATTTAGC
66 GATTAAACTCTTATGAGCATATGTTGGACACAAGATTTAGC
105527230 TAATCCTAATATAAGCCCTCTTGAACATATGAGATAGATAGAATTTAGCCCGAACAGGTAATCCT
1 TAATCCTAATATAAGCCCTCTTGAACATATGAGATAGATAGAATTTAGCCCGAACAGGTAATCCT
105527295 GATTAAACTCTTATGAGCATATGTTGGACACAAGATTTA
66 GATTAAACTCTTATGAGCATATGTTGGACACAAGATTTA
105527334 TCTTGGACAA
Statistics
Matches: 100, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
106 100 1.00
ACGTcount: A:0.35, C:0.17, G:0.18, T:0.30
Consensus pattern (106 bp):
TAATCCTAATATAAGCCCTCTTGAACATATGAGATAGATAGAATTTAGCCCGAACAGGTAATCCT
GATTAAACTCTTATGAGCATATGTTGGACACAAGATTTAGC
Found at i:105527544 original size:16 final size:17
Alignment explanation
Indices: 105527517--105527549 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
105527507 AGTTATGAGA
*
105527517 TGAAATGAATAATGTAT
1 TGAAATGAATAAAGTAT
105527534 TGAAA-GAATAAAGTAT
1 TGAAATGAATAAAGTAT
105527550 GATGAGTTCA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 10 0.67
17 5 0.33
ACGTcount: A:0.52, C:0.00, G:0.18, T:0.30
Consensus pattern (17 bp):
TGAAATGAATAAAGTAT
Found at i:105534573 original size:10 final size:10
Alignment explanation
Indices: 105534554--105534613 Score: 79
Period size: 10 Copynumber: 6.0 Consensus size: 10
105534544 TGAAATTCTA
105534554 AAAGATAAAT
1 AAAGATAAAT
105534564 ACAA-ATAAAT
1 A-AAGATAAAT
*
105534574 AAAGATAATT
1 AAAGATAAAT
105534584 AAAGATAAAT
1 AAAGATAAAT
105534594 AAAGATAAAT
1 AAAGATAAAT
105534604 GAAA-ATAAAT
1 -AAAGATAAAT
105534614 CCTAAAATTA
Statistics
Matches: 45, Mismatches: 2, Indels: 6
0.85 0.04 0.11
Matches are distributed among these distances:
9 2 0.04
10 38 0.84
11 5 0.11
ACGTcount: A:0.68, C:0.02, G:0.08, T:0.22
Consensus pattern (10 bp):
AAAGATAAAT
Found at i:105538430 original size:39 final size:38
Alignment explanation
Indices: 105538341--105538437 Score: 106
Period size: 39 Copynumber: 2.5 Consensus size: 38
105538331 CGGATAGATT
* * *
105538341 CGATGAGGTACTGGGTACCAACTTTACTTCGGCTAGGC
1 CGATGAGGCACTGGGTGCCAACTTTACTTCGACTAGGC
* * * *
105538379 CGAGGAGACACTGGGTGTCAACTATTACTTCGAACTA-TC
1 CGATGAGGCACTGGGTGCCAACT-TTACTTCG-ACTAGGC
105538418 CGATGAGGCACTGGGTGCCA
1 CGATGAGGCACTGGGTGCCA
105538438 TATTGGTGTG
Statistics
Matches: 47, Mismatches: 10, Indels: 3
0.78 0.17 0.05
Matches are distributed among these distances:
38 18 0.38
39 26 0.55
40 3 0.06
ACGTcount: A:0.24, C:0.24, G:0.29, T:0.24
Consensus pattern (38 bp):
CGATGAGGCACTGGGTGCCAACTTTACTTCGACTAGGC
Found at i:105545247 original size:41 final size:41
Alignment explanation
Indices: 105545201--105545301 Score: 102
Period size: 38 Copynumber: 2.5 Consensus size: 41
105545191 TCGACCTCGA
*
105545201 GTCGATGAGACACTGGGTGTCACTAAATTT-CTTCGGATAG
1 GTCGATGAGACACTGGGTGTCACCAAATTTACTTCGGATAG
* ** * *
105545241 ATTCGATGAGGTACT-GG-GT-ACCAACTTTACTTCGGCTAG
1 -GTCGATGAGACACTGGGTGTCACCAAATTTACTTCGGATAG
*
105545280 GCCGATGAGACACTGGGTGTCA
1 GTCGATGAGACACTGGGTGTCA
105545302 ACTATTACTT
Statistics
Matches: 46, Mismatches: 10, Indels: 8
0.72 0.16 0.12
Matches are distributed among these distances:
38 17 0.37
39 13 0.28
40 4 0.09
41 12 0.26
ACGTcount: A:0.24, C:0.20, G:0.29, T:0.28
Consensus pattern (41 bp):
GTCGATGAGACACTGGGTGTCACCAAATTTACTTCGGATAG
Found at i:105545310 original size:39 final size:39
Alignment explanation
Indices: 105545203--105545337 Score: 123
Period size: 39 Copynumber: 3.4 Consensus size: 39
105545193 GACCTCGAGT
* * *
105545203 CGATGAGACACTGGGTGTC-ACTAAATTTCTTCGGATAGATT
1 CGATGAGACACTGGGTGTCAACT--ATTACTTCGGCTAG-TC
** ** *
105545244 CGATGAGGTACTGGGTACCAACT-TTACTTCGGCTAGGC
1 CGATGAGACACTGGGTGTCAACTATTACTTCGGCTAGTC
*
105545282 CGATGAGACACTGGGTGTCAACTATTACTTCGAACTA-TC
1 CGATGAGACACTGGGTGTCAACTATTACTTCG-GCTAGTC
*
105545321 CGATGAGGCACTGGGTG
1 CGATGAGACACTGGGTG
105545338 CCATATTGGT
Statistics
Matches: 76, Mismatches: 15, Indels: 8
0.77 0.15 0.08
Matches are distributed among these distances:
38 19 0.25
39 36 0.47
40 3 0.04
41 15 0.20
42 3 0.04
ACGTcount: A:0.24, C:0.21, G:0.27, T:0.27
Consensus pattern (39 bp):
CGATGAGACACTGGGTGTCAACTATTACTTCGGCTAGTC
Found at i:105545465 original size:18 final size:18
Alignment explanation
Indices: 105545442--105545482 Score: 57
Period size: 18 Copynumber: 2.3 Consensus size: 18
105545432 TAAAAAAAAA
105545442 AGAAATT-GAATTATGAAT
1 AGAAATTGGAATTATG-AT
*
105545460 AGAAATTGGAATTGTGAT
1 AGAAATTGGAATTATGAT
105545478 AGAAA
1 AGAAA
105545483 GAGAAAAGTA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
18 14 0.67
19 7 0.33
ACGTcount: A:0.49, C:0.00, G:0.22, T:0.29
Consensus pattern (18 bp):
AGAAATTGGAATTATGAT
Found at i:105547855 original size:21 final size:21
Alignment explanation
Indices: 105547830--105547872 Score: 86
Period size: 21 Copynumber: 2.0 Consensus size: 21
105547820 AAAATTGAAG
105547830 AAAACTCTAGATTTTTACCTA
1 AAAACTCTAGATTTTTACCTA
105547851 AAAACTCTAGATTTTTACCTA
1 AAAACTCTAGATTTTTACCTA
105547872 A
1 A
105547873 TATATATCAT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.40, C:0.19, G:0.05, T:0.37
Consensus pattern (21 bp):
AAAACTCTAGATTTTTACCTA
Found at i:105556212 original size:20 final size:20
Alignment explanation
Indices: 105556164--105556221 Score: 71
Period size: 20 Copynumber: 2.9 Consensus size: 20
105556154 AGATAGGGGC
* *
105556164 ACATGCCCGTGTGGCTTGGG
1 ACATGCCCGTGTGGCCTGGA
**
105556184 ACACACCCGTGTGGCCTGGA
1 ACATGCCCGTGTGGCCTGGA
*
105556204 ACATGCCCGTATGGCCTG
1 ACATGCCCGTGTGGCCTG
105556222 TACATATGCA
Statistics
Matches: 31, Mismatches: 7, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
20 31 1.00
ACGTcount: A:0.16, C:0.31, G:0.33, T:0.21
Consensus pattern (20 bp):
ACATGCCCGTGTGGCCTGGA
Found at i:105560050 original size:6 final size:6
Alignment explanation
Indices: 105560018--105560080 Score: 72
Period size: 6 Copynumber: 9.8 Consensus size: 6
105560008 TGAAAATAAT
* *
105560018 AAAATA ATAAATAA AAAATAAA AAAATA CAAATA CAAATA AAAATA AAAATA
1 AAAATA A-AAAT-A AAAAT--A AAAATA AAAATA AAAATA AAAATA AAAATA
105560070 AAAATA AAAAT
1 AAAATA AAAAT
105560081 TAAAGATTGG
Statistics
Matches: 52, Mismatches: 2, Indels: 6
0.87 0.03 0.10
Matches are distributed among these distances:
6 35 0.67
7 8 0.15
8 9 0.17
ACGTcount: A:0.79, C:0.03, G:0.00, T:0.17
Consensus pattern (6 bp):
AAAATA
Found at i:105566522 original size:10 final size:11
Alignment explanation
Indices: 105566495--105566544 Score: 54
Period size: 10 Copynumber: 4.9 Consensus size: 11
105566485 TGAAATTCTA
105566495 AAAGATAAATG
1 AAAGATAAATG
*
105566506 CAA-ATAAAT-
1 AAAGATAAATG
*
105566515 AAAGAT-AATT
1 AAAGATAAATG
105566525 AAAGATAAATG
1 AAAGATAAATG
105566536 AAA-ATAAAT
1 AAAGATAAAT
105566545 CCTAAAATTA
Statistics
Matches: 33, Mismatches: 3, Indels: 7
0.77 0.07 0.16
Matches are distributed among these distances:
9 5 0.15
10 20 0.61
11 8 0.24
ACGTcount: A:0.66, C:0.02, G:0.10, T:0.22
Consensus pattern (11 bp):
AAAGATAAATG
Found at i:105567105 original size:22 final size:22
Alignment explanation
Indices: 105567067--105567108 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
105567057 TACATAATCA
*
105567067 AATCAAATATGATTATATATGC
1 AATCAAATATGAATATATATGC
105567089 AATCAAATA-GAAATATATAT
1 AATCAAATATG-AATATATAT
105567109 TCGAAAGAGC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 1 0.06
22 17 0.94
ACGTcount: A:0.52, C:0.07, G:0.07, T:0.33
Consensus pattern (22 bp):
AATCAAATATGAATATATATGC
Found at i:105575413 original size:11 final size:11
Alignment explanation
Indices: 105575394--105575445 Score: 59
Period size: 11 Copynumber: 4.7 Consensus size: 11
105575384 AACTTCATTC
105575394 TTATTATTTTA
1 TTATTATTTTA
* *
105575405 TTATCATTTCA
1 TTATTATTTTA
* *
105575416 CTATTATATTA
1 TTATTATTTTA
*
105575427 TTAATATTTTA
1 TTATTATTTTA
105575438 TTATTATT
1 TTATTATT
105575446 ATTTGTATAT
Statistics
Matches: 31, Mismatches: 10, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
11 31 1.00
ACGTcount: A:0.31, C:0.06, G:0.00, T:0.63
Consensus pattern (11 bp):
TTATTATTTTA
Found at i:105575473 original size:33 final size:32
Alignment explanation
Indices: 105575420--105575493 Score: 89
Period size: 33 Copynumber: 2.3 Consensus size: 32
105575410 ATTTCACTAT
105575420 TATATTATTAATATTTTATTATTATT-ATTTG
1 TATATTATTAATATTTTATTATTATTAATTTG
* *
105575451 TATATTGTATAATTTTTGTATTATTATTAATTTG
1 TATATTAT-TAATATTT-TATTATTATTAATTTG
105575485 -ACTATTATT
1 TA-TATTATT
105575494 TTAAACGAAA
Statistics
Matches: 36, Mismatches: 3, Indels: 6
0.80 0.07 0.13
Matches are distributed among these distances:
31 7 0.19
32 7 0.19
33 12 0.33
34 10 0.28
ACGTcount: A:0.31, C:0.01, G:0.05, T:0.62
Consensus pattern (32 bp):
TATATTATTAATATTTTATTATTATTAATTTG
Found at i:105593880 original size:15 final size:16
Alignment explanation
Indices: 105593850--105593890 Score: 50
Period size: 15 Copynumber: 2.6 Consensus size: 16
105593840 TCTTTTCTAT
105593850 CTTTCTTTTTCTTTTA
1 CTTTCTTTTTCTTTTA
105593866 -TTTCTTTTT-TATTTA
1 CTTTCTTTTTCT-TTTA
105593881 CTTTACTTTT
1 CTTT-CTTTT
105593891 AATAATAATA
Statistics
Matches: 22, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
14 1 0.05
15 13 0.59
16 3 0.14
17 5 0.23
ACGTcount: A:0.10, C:0.15, G:0.00, T:0.76
Consensus pattern (16 bp):
CTTTCTTTTTCTTTTA
Found at i:105599467 original size:21 final size:20
Alignment explanation
Indices: 105599421--105599468 Score: 53
Period size: 21 Copynumber: 2.4 Consensus size: 20
105599411 ATATTATTAT
*
105599421 TATTCATGATTTGATTCTAC
1 TATTCATGATTTGACTCTAC
*
105599441 TGTTCATGAATTTGAC-CTCAC
1 TATTCATG-ATTTGACTCT-AC
105599462 TATTCAT
1 TATTCAT
105599469 AGGACTAACA
Statistics
Matches: 23, Mismatches: 3, Indels: 3
0.79 0.10 0.10
Matches are distributed among these distances:
20 9 0.39
21 14 0.61
ACGTcount: A:0.25, C:0.19, G:0.10, T:0.46
Consensus pattern (20 bp):
TATTCATGATTTGACTCTAC
Found at i:105599555 original size:33 final size:33
Alignment explanation
Indices: 105599518--105599584 Score: 107
Period size: 33 Copynumber: 2.0 Consensus size: 33
105599508 CGTGTACCGT
*
105599518 TCTGGATCGCCTCTTAGGCCTTGCGGTCTACTA
1 TCTGGATCGCCTCTTAGGCCTTGCAGTCTACTA
* *
105599551 TCTGGGTCGCCTCTTAGGTCTTGCAGTCTACTA
1 TCTGGATCGCCTCTTAGGCCTTGCAGTCTACTA
105599584 T
1 T
105599585 ATGCTAACTC
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
33 31 1.00
ACGTcount: A:0.12, C:0.28, G:0.24, T:0.36
Consensus pattern (33 bp):
TCTGGATCGCCTCTTAGGCCTTGCAGTCTACTA
Found at i:105612191 original size:21 final size:22
Alignment explanation
Indices: 105612162--105612212 Score: 61
Period size: 21 Copynumber: 2.4 Consensus size: 22
105612152 ACATGTTACA
* *
105612162 TAAT-ATTTACTTTTTCATTT-
1 TAATCATTTAATTTTTAATTTG
105612182 TAATCATTTAATTTTTAATTTG
1 TAATCATTTAATTTTTAATTTG
*
105612204 TTATCATTT
1 TAATCATTT
105612213 TAGTCACCAA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
20 4 0.15
21 14 0.54
22 8 0.31
ACGTcount: A:0.27, C:0.08, G:0.02, T:0.63
Consensus pattern (22 bp):
TAATCATTTAATTTTTAATTTG
Found at i:105612704 original size:21 final size:21
Alignment explanation
Indices: 105612678--105612719 Score: 84
Period size: 21 Copynumber: 2.0 Consensus size: 21
105612668 ACATTCCTTA
105612678 AGTGCCAAGCCAAACAAATAT
1 AGTGCCAAGCCAAACAAATAT
105612699 AGTGCCAAGCCAAACAAATAT
1 AGTGCCAAGCCAAACAAATAT
105612720 TAACTATTCT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.48, C:0.24, G:0.14, T:0.14
Consensus pattern (21 bp):
AGTGCCAAGCCAAACAAATAT
Found at i:105613420 original size:72 final size:73
Alignment explanation
Indices: 105613330--105613473 Score: 236
Period size: 73 Copynumber: 2.0 Consensus size: 73
105613320 ATAACCTTTT
* *
105613330 CATGTTATAAAACATATACAAGTAAACACATT-GACATACCATTTATTCAACATCTATTCATTTA
1 CATGTTATAAAACATATACAAGTAAACACATTAGACATACAATTCATTCAACATCTATTCATTTA
105613394 ACATTTCA
66 ACATTTCA
* * *
105613402 CATGTTATAAAACGTATACAAGTAATCACATTAGATATACAATTCATTCAACATCTATTCATTTA
1 CATGTTATAAAACATATACAAGTAAACACATTAGACATACAATTCATTCAACATCTATTCATTTA
105613467 ACATTTC
66 ACATTTC
105613474 CCATTTTAAA
Statistics
Matches: 66, Mismatches: 5, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
72 30 0.45
73 36 0.55
ACGTcount: A:0.41, C:0.19, G:0.05, T:0.35
Consensus pattern (73 bp):
CATGTTATAAAACATATACAAGTAAACACATTAGACATACAATTCATTCAACATCTATTCATTTA
ACATTTCA
Found at i:105613562 original size:40 final size:39
Alignment explanation
Indices: 105613517--105613614 Score: 101
Period size: 40 Copynumber: 2.4 Consensus size: 39
105613507 TATAGATCTA
105613517 TCTATATAAACATTTCGTATAAACACTTT-ATATAATTATT
1 TCTATATAAACATTTCGTATAAACA-TTTCATAT-ATTATT
* * *
105613557 TCTATATAATCGA-TTCATATAATCATTTCATATATTATT
1 TCTATATAAAC-ATTTCGTATAAACATTTCATATATTATT
*
105613596 TTTATATATAACCATTTCG
1 TCTATATA-AA-CATTTCG
105613615 AATAGCTATA
Statistics
Matches: 47, Mismatches: 6, Indels: 9
0.76 0.10 0.15
Matches are distributed among these distances:
39 16 0.34
40 26 0.55
41 5 0.11
ACGTcount: A:0.37, C:0.13, G:0.03, T:0.47
Consensus pattern (39 bp):
TCTATATAAACATTTCGTATAAACATTTCATATATTATT
Found at i:105613578 original size:13 final size:13
Alignment explanation
Indices: 105613520--105613590 Score: 65
Period size: 13 Copynumber: 5.4 Consensus size: 13
105613510 AGATCTATCT
*
105613520 ATATAAACATTTC
1 ATATAATCATTTC
* *
105613533 GTATAAACACTTT-
1 ATATAATCA-TTTC
*
105613546 ATATAATTATTTC
1 ATATAATCATTTC
105613559 TATATAATCGA-TTC
1 -ATATAATC-ATTTC
105613573 ATATAATCATTTC
1 ATATAATCATTTC
105613586 ATATA
1 ATATA
105613591 TTATTTTTAT
Statistics
Matches: 48, Mismatches: 5, Indels: 10
0.76 0.08 0.16
Matches are distributed among these distances:
12 4 0.08
13 30 0.62
14 13 0.27
15 1 0.02
ACGTcount: A:0.41, C:0.13, G:0.03, T:0.44
Consensus pattern (13 bp):
ATATAATCATTTC
Found at i:105614025 original size:44 final size:44
Alignment explanation
Indices: 105613867--105614082 Score: 139
Period size: 45 Copynumber: 4.8 Consensus size: 44
105613857 TTGTGCAAAG
* * * **
105613867 GATGCCATAGCGTCTTACAGCTACGGTCTTACACACTTCCGAT-AT
1 GATGCCATAGCGTCTTTCAGCTATGGTCTTACTCA-TT-AAATCAT
* * * * ***
105613912 GATGCAATAGTGTTTTTCAACTATGGTCTTA-TCCATTTCTGTCAT
1 GATGCCATAGCGTCTTTCAGCTATGGTCTTACT-CA-TTAAATCAT
* * ** * * *
105613957 GTTACCATAATGTCATTCAACTATGGTCTTACACATTAAATCAT
1 GATGCCATAGCGTCTTTCAGCTATGGTCTTACTCATTAAATCAT
** ** *
105614001 GATGCCATAGCGTCTTTTTGCTATGGTCTTACTTGTTTGAATCAT
1 GATGCCATAGCGTCTTTCAGCTATGGTCTTAC-TCATTAAATCAT
* *
105614046 GATGCTATAGCGTCTTTCAGCTATGATCTTACTCATT
1 GATGCCATAGCGTCTTTCAGCTATGGTCTTACTCATT
105614083 TCCAATATAA
Statistics
Matches: 129, Mismatches: 38, Indels: 9
0.73 0.22 0.05
Matches are distributed among these distances:
44 35 0.27
45 94 0.73
ACGTcount: A:0.24, C:0.21, G:0.16, T:0.39
Consensus pattern (44 bp):
GATGCCATAGCGTCTTTCAGCTATGGTCTTACTCATTAAATCAT
Found at i:105615411 original size:41 final size:41
Alignment explanation
Indices: 105615354--105615431 Score: 113
Period size: 41 Copynumber: 1.9 Consensus size: 41
105615344 ATTGTGATAT
*
105615354 TCGGGCTTTGAGCCTAGCAAGCCTT-GTGCTGGTGAATTTGA
1 TCGGGCTTTGAGCCTAGC-AGCCTTAGTGCCGGTGAATTTGA
* *
105615395 TCGGGCTTTGTGCCTAGCAGGCTTAGTGCCGGTGAAT
1 TCGGGCTTTGAGCCTAGCAGCCTTAGTGCCGGTGAAT
105615432 AAATATCAGA
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
40 5 0.15
41 28 0.85
ACGTcount: A:0.15, C:0.21, G:0.33, T:0.31
Consensus pattern (41 bp):
TCGGGCTTTGAGCCTAGCAGCCTTAGTGCCGGTGAATTTGA
Found at i:105622561 original size:50 final size:51
Alignment explanation
Indices: 105622479--105622600 Score: 210
Period size: 50 Copynumber: 2.4 Consensus size: 51
105622469 GACCATGGCA
*
105622479 ACAAGTGATAAGTGATAGCTTCGGCTATACTTATCTGATCAAGGACAAATG
1 ACAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATG
105622530 A-AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATG
1 ACAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATG
* *
105622580 ACAAGTGAAAAGTGGTAGCTT
1 ACAAGTGATAAGTGATAGCTT
105622601 TTGCCACTTG
Statistics
Matches: 67, Mismatches: 3, Indels: 2
0.93 0.04 0.03
Matches are distributed among these distances:
50 49 0.73
51 18 0.27
ACGTcount: A:0.36, C:0.15, G:0.23, T:0.26
Consensus pattern (51 bp):
ACAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATG
Found at i:105622657 original size:31 final size:31
Alignment explanation
Indices: 105622583--105622701 Score: 150
Period size: 31 Copynumber: 3.8 Consensus size: 31
105622573 ACAAATGACA
* * * *
105622583 AGTGAAAAGTGGTAGCTTTTGCCACTTGATC
1 AGTGAAAAGTGGTAGCTCTGGCTACCTGATC
*
105622614 AGTCAAAAAGTGGTAGCTCTGGCTACCTGATC
1 AGT-GAAAAGTGGTAGCTCTGGCTACCTGATC
*
105622646 AGTGAAAAGTGGTAGCTCCGGCTACCTGATC
1 AGTGAAAAGTGGTAGCTCTGGCTACCTGATC
*
105622677 AGTGAATAGTGGTAGCT-TCGGCTAC
1 AGTGAAAAGTGGTAGCTCT-GGCTAC
105622702 AAGTGACAAG
Statistics
Matches: 77, Mismatches: 9, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
31 51 0.66
32 26 0.34
ACGTcount: A:0.26, C:0.19, G:0.28, T:0.27
Consensus pattern (31 bp):
AGTGAAAAGTGGTAGCTCTGGCTACCTGATC
Found at i:105622789 original size:47 final size:46
Alignment explanation
Indices: 105622719--105622842 Score: 167
Period size: 47 Copynumber: 2.7 Consensus size: 46
105622709 AAGTGATTTC
* *
105622719 CGTATAAGACCATATCTGGGATATGGCATCGGTGTGATATATGCTA
1 CGTATAAGACCATATCTGGGATATGGCATCGGTGAGATATATGATA
* * *
105622765 CTGTATAAGACCATATCTGGGATATGGCATCAGTGAGATATGTGATT
1 C-GTATAAGACCATATCTGGGATATGGCATCGGTGAGATATATGATA
* * *
105622812 CGTGTAAGACCATAGCTGGGCTATGGCATCG
1 CGTATAAGACCATATCTGGGATATGGCATCG
105622843 ATATGTGATA
Statistics
Matches: 68, Mismatches: 9, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
46 27 0.40
47 41 0.60
ACGTcount: A:0.27, C:0.16, G:0.27, T:0.29
Consensus pattern (46 bp):
CGTATAAGACCATATCTGGGATATGGCATCGGTGAGATATATGATA
Found at i:105622874 original size:49 final size:46
Alignment explanation
Indices: 105622723--105622877 Score: 157
Period size: 47 Copynumber: 3.3 Consensus size: 46
105622713 GATTTCCGTA
* ** * * * * *
105622723 TAAGACCATATCTGGGATATGGCATCGGTGTGATATATGCTACTGTA
1 TAAGACCATAGCTGGGATATGGCATCAATGAGATATGTGATTC-GTG
* *
105622770 TAAGACCATATCTGGGATATGGCATCAGTGAGATATGTGATTCGTG
1 TAAGACCATAGCTGGGATATGGCATCAATGAGATATGTGATTCGTG
* *
105622816 TAAGACCATAGCTGGGCTATGGCATCGATATGTGATATGTGATTTCGTG
1 TAAGACCATAGCTGGGATATGGCATC-A-ATGAGATATGTGA-TTCGTG
*
105622865 TAAGGCCATAGCT
1 TAAGACCATAGCT
105622878 ATAACACCCT
Statistics
Matches: 94, Mismatches: 11, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
46 26 0.28
47 39 0.41
48 11 0.12
49 18 0.19
ACGTcount: A:0.27, C:0.15, G:0.27, T:0.31
Consensus pattern (46 bp):
TAAGACCATAGCTGGGATATGGCATCAATGAGATATGTGATTCGTG
Found at i:105625596 original size:46 final size:46
Alignment explanation
Indices: 105625544--105626093 Score: 884
Period size: 46 Copynumber: 12.0 Consensus size: 46
105625534 GCTTTCTGAA
105625544 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT
1 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT
*
105625590 ATGAAATGTGTAAGACCATGGTTGAAAGACACCATGGCAACATGAT
1 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT
*
105625636 ATGAAATGTGTAAGACCATGGTTGAAAGACACCATGGCAACATGAT
1 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT
*
105625682 ATGAAATGTGCAAGACCATGGTTGAAAGATACCATGGCAACATGAT
1 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT
105625728 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT
1 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT
*
105625774 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACAGGAT
1 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT
* * *
105625820 ATAAAATTTGTAAGACCATAGTTGAAAGATACCATGGCAACATGAT
1 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT
*
105625866 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACAGGAT
1 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT
105625912 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT
1 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT
** * *
105625958 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAATGTAAC
1 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT
*** * *
105626004 ATGAAATGAACAAGACCATGGTTGAAAGATACCATGGCAACCTGAC
1 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT
** * * * * *
105626050 AAAAAATGAGTAAGACCATAGTTGAAAGACACTATGGCATCATG
1 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATG
105626094 TCAAAGATAA
Statistics
Matches: 471, Mismatches: 33, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
46 471 1.00
ACGTcount: A:0.40, C:0.14, G:0.23, T:0.22
Consensus pattern (46 bp):
ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT
Found at i:105626952 original size:42 final size:42
Alignment explanation
Indices: 105626893--105626980 Score: 133
Period size: 42 Copynumber: 2.1 Consensus size: 42
105626883 GGGTGTTACA
* *
105626893 ATAGCTGGGCTATGGCATCGA-TATATGAATATGTGTAAGACC
1 ATAGCTGCGCTATGGCATC-ATTATATGAAGATGTGTAAGACC
*
105626935 ATAGCTGCGCTATGGCATCATTATGTGAAGATGTGTAAGACC
1 ATAGCTGCGCTATGGCATCATTATATGAAGATGTGTAAGACC
105626977 ATAG
1 ATAG
105626981 TTGAACTATG
Statistics
Matches: 42, Mismatches: 3, Indels: 2
0.89 0.06 0.04
Matches are distributed among these distances:
41 1 0.02
42 41 0.98
ACGTcount: A:0.31, C:0.15, G:0.26, T:0.28
Consensus pattern (42 bp):
ATAGCTGCGCTATGGCATCATTATATGAAGATGTGTAAGACC
Found at i:105626990 original size:42 final size:42
Alignment explanation
Indices: 105626893--105626990 Score: 117
Period size: 42 Copynumber: 2.3 Consensus size: 42
105626883 GGGTGTTACA
** *
105626893 ATAGCTGGGCTATGGCATCGATATATGAATATGTGTAAGACC
1 ATAGCTGAACTATGGCATCGATATATGAAGATGTGTAAGACC
** *
105626935 ATAGCTGCGCTATGGCATC-ATTATGTGAAGATGTGTAAGACC
1 ATAGCTGAACTATGGCATCGA-TATATGAAGATGTGTAAGACC
*
105626977 ATAGTTGAACTATG
1 ATAGCTGAACTATG
105626991 TAAGACCATA
Statistics
Matches: 49, Mismatches: 6, Indels: 2
0.86 0.11 0.04
Matches are distributed among these distances:
41 1 0.02
42 48 0.98
ACGTcount: A:0.31, C:0.14, G:0.26, T:0.30
Consensus pattern (42 bp):
ATAGCTGAACTATGGCATCGATATATGAAGATGTGTAAGACC
Found at i:105626992 original size:21 final size:21
Alignment explanation
Indices: 105626968--105627011 Score: 88
Period size: 21 Copynumber: 2.1 Consensus size: 21
105626958 TGTGAAGATG
105626968 TGTAAGACCATAGTTGAACTA
1 TGTAAGACCATAGTTGAACTA
105626989 TGTAAGACCATAGTTGAACTA
1 TGTAAGACCATAGTTGAACTA
105627010 TG
1 TG
105627012 GCATCGAGAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.36, C:0.14, G:0.20, T:0.30
Consensus pattern (21 bp):
TGTAAGACCATAGTTGAACTA
Found at i:105634973 original size:27 final size:27
Alignment explanation
Indices: 105634806--105634983 Score: 119
Period size: 27 Copynumber: 6.6 Consensus size: 27
105634796 TAAATTGTAC
*
105634806 AGCACTAAGTGTGCGA-TTCTACTT-TGT
1 AGCACTAAGTGTGCGAGTT-GA-TTATGT
* ** *
105634833 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGAGTTGATTATGT
* * ** **
105634859 ATGCACTAAGAGTGCGAATTGACCATAC
1 A-GCACTAAGTGTGCGAGTTGATTATGT
* * *
105634887 GGCACTAAGTGTGCGAGTCTAACTATGT
1 AGCACTAAGTGTGCGAGT-TGATTATGT
* *
105634915 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGAGTTGATTATGT
* * *
105634942 GGCACTAAATGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGTTGATTATGT
*
105634969 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
105634984 GGCTCAATAT
Statistics
Matches: 116, Mismatches: 30, Indels: 10
0.74 0.19 0.06
Matches are distributed among these distances:
26 1 0.01
27 93 0.80
28 22 0.19
ACGTcount: A:0.28, C:0.16, G:0.26, T:0.29
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGTTGATTATGT
Found at i:105634974 original size:82 final size:81
Alignment explanation
Indices: 105634803--105634983 Score: 204
Period size: 82 Copynumber: 2.2 Consensus size: 81
105634793 GATTAAATTG
* * * *
105634803 TACAGCACTAAGTGTGCGATTCTACTTTGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGAGTCTACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
105634868 GAGTGCGAATTGACCA
66 GAGTGCGAATTGACCA
* ** *
105634884 TACGGCACTAAGTGTGCGAGTCTAACTATGTAGCACTAAGTGTGCGATTTGATTACG-TGGCACT
1 TACAGCACTAAGTGTGCGAGTCT-ACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
105634948 AA-ATGTGCGAGTTGATTA
64 AAGA-GTGCGAATTGACCA
* *
105634966 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
105634984 GGCTCAATAT
Statistics
Matches: 83, Mismatches: 14, Indels: 5
0.81 0.14 0.05
Matches are distributed among these distances:
81 23 0.28
82 60 0.72
ACGTcount: A:0.28, C:0.17, G:0.26, T:0.29
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGAGTCTACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GAGTGCGAATTGACCA
Found at i:105642987 original size:27 final size:27
Alignment explanation
Indices: 105642820--105642997 Score: 119
Period size: 27 Copynumber: 6.6 Consensus size: 27
105642810 TAAATTGTAC
*
105642820 AGCACTAAGTGTGCGA-TTCTACTT-TGT
1 AGCACTAAGTGTGCGAGTT-GA-TTATGT
* ** *
105642847 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGAGTTGATTATGT
* * ** **
105642873 ATGCACTAAGAGTGCGAATTGACCATAC
1 A-GCACTAAGTGTGCGAGTTGATTATGT
* * *
105642901 GGCACTAAGTGTGCGAGTCTAACTATGT
1 AGCACTAAGTGTGCGAGT-TGATTATGT
* *
105642929 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGAGTTGATTATGT
* * *
105642956 GGCACTAAATGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGTTGATTATGT
*
105642983 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
105642998 GGCTCAATAT
Statistics
Matches: 116, Mismatches: 30, Indels: 10
0.74 0.19 0.06
Matches are distributed among these distances:
26 1 0.01
27 93 0.80
28 22 0.19
ACGTcount: A:0.28, C:0.16, G:0.26, T:0.29
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGTTGATTATGT
Found at i:105642988 original size:82 final size:81
Alignment explanation
Indices: 105642817--105642997 Score: 204
Period size: 82 Copynumber: 2.2 Consensus size: 81
105642807 GATTAAATTG
* * * *
105642817 TACAGCACTAAGTGTGCGATTCTACTTTGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGAGTCTACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
105642882 GAGTGCGAATTGACCA
66 GAGTGCGAATTGACCA
* ** *
105642898 TACGGCACTAAGTGTGCGAGTCTAACTATGTAGCACTAAGTGTGCGATTTGATTACG-TGGCACT
1 TACAGCACTAAGTGTGCGAGTCT-ACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
105642962 AA-ATGTGCGAGTTGATTA
64 AAGA-GTGCGAATTGACCA
* *
105642980 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
105642998 GGCTCAATAT
Statistics
Matches: 83, Mismatches: 14, Indels: 5
0.81 0.14 0.05
Matches are distributed among these distances:
81 23 0.28
82 60 0.72
ACGTcount: A:0.28, C:0.17, G:0.26, T:0.29
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGAGTCTACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GAGTGCGAATTGACCA
Found at i:105644728 original size:24 final size:25
Alignment explanation
Indices: 105644677--105644728 Score: 63
Period size: 24 Copynumber: 2.1 Consensus size: 25
105644667 AGCTCTGGAT
*
105644677 AGCCATATATCGCGAAGTTCAAGCG
1 AGCCATATATCGCGAAGCTCAAGCG
*
105644702 AGCCA-ATATCGGGAAGCTCTAAG-G
1 AGCCATATATCGCGAAGCTC-AAGCG
105644726 AGC
1 AGC
105644729 AATTGATTAG
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
24 16 0.67
25 8 0.33
ACGTcount: A:0.33, C:0.23, G:0.27, T:0.17
Consensus pattern (25 bp):
AGCCATATATCGCGAAGCTCAAGCG
Found at i:105652040 original size:51 final size:50
Alignment explanation
Indices: 105651976--105652135 Score: 239
Period size: 51 Copynumber: 3.2 Consensus size: 50
105651966 CTGATCACAT
*
105651976 TTATCACTTGTCACTGATCAGATAAGTGTAGCTAAAGCTATCACTTATCAC
1 TTATCACTTGTCACTGATCAGATAAGTGTAGCT-AAGCTACCACTTATCAC
* *
105652027 TTATCACTTGTCACTGATCAGATAAGAGTAGCTAAGCTACCACTTATCAT
1 TTATCACTTGTCACTGATCAGATAAGTGTAGCTAAGCTACCACTTATCAC
* * *
105652077 TTGTCACTTATCACTGATCAGATAAGTGTAGCTGAGGCTACCACTTATCAC
1 TTATCACTTGTCACTGATCAGATAAGTGTAGCT-AAGCTACCACTTATCAC
*
105652128 TTGTCACT
1 TTATCACT
105652136 GATCAGAAGT
Statistics
Matches: 100, Mismatches: 8, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
50 45 0.45
51 55 0.55
ACGTcount: A:0.29, C:0.23, G:0.15, T:0.33
Consensus pattern (50 bp):
TTATCACTTGTCACTGATCAGATAAGTGTAGCTAAGCTACCACTTATCAC
Found at i:105652326 original size:10 final size:10
Alignment explanation
Indices: 105652305--105652337 Score: 59
Period size: 10 Copynumber: 3.4 Consensus size: 10
105652295 ACCTGGGTCG
105652305 ATTTGT-AAA
1 ATTTGTGAAA
105652314 ATTTGTGAAA
1 ATTTGTGAAA
105652324 ATTTGTGAAA
1 ATTTGTGAAA
105652334 ATTT
1 ATTT
105652338 AGGGACTAAT
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
9 6 0.26
10 17 0.74
ACGTcount: A:0.39, C:0.00, G:0.15, T:0.45
Consensus pattern (10 bp):
ATTTGTGAAA
Found at i:105656241 original size:25 final size:25
Alignment explanation
Indices: 105656198--105656353 Score: 99
Period size: 25 Copynumber: 6.3 Consensus size: 25
105656188 AAGCTCATGT
* *
105656198 GAGCCAATAA-CGGGTAGCTCCGAA
1 GAGCCATTAATCGGGAAGCTCCGAA
*
105656222 GAGCCATTAATCGGGAAGCT-CTAGA
1 GAGCCATTAATCGGGAAGCTCCGA-A
* *
105656247 TAGCCA-TATATCGGGAAG-TTC-AA
1 GAGCCATTA-ATCGGGAAGCTCCGAA
* *
105656270 GCGAGCCAAT-ATCGGGAAGCTCCGAG
1 --GAGCCATTAATCGGGAAGCTCCGAA
** **
105656296 GAGCCATTAATCAAGAAGCTCATAAA
1 GAGCCATTAATCGGGAAGCTC-CGAA
* * *
105656322 GAGCCTTTAATCGAGAAGCTTCGAA
1 GAGCCATTAATCGGGAAGCTCCGAA
105656347 GAGCCAT
1 GAGCCAT
105656354 ATATTGGAAT
Statistics
Matches: 102, Mismatches: 19, Indels: 21
0.72 0.13 0.15
Matches are distributed among these distances:
23 1 0.01
24 31 0.30
25 49 0.48
26 21 0.21
ACGTcount: A:0.34, C:0.22, G:0.26, T:0.19
Consensus pattern (25 bp):
GAGCCATTAATCGGGAAGCTCCGAA
Found at i:105656264 original size:74 final size:73
Alignment explanation
Indices: 105656160--105656326 Score: 201
Period size: 74 Copynumber: 2.3 Consensus size: 73
105656150 GGCTGTATAA
* * * *
105656160 CGGGAAGCTCATAAGAGCCATAATTAGGAAGCTCATGTGAGCCAATAACGGGTAGCTCCGAAGAG
1 CGGGAAGCTCATAAGAGCCATAATCAGGAAGCTCAAGCGAGCCAATAACGGGAAGCTCCGAAGAG
105656225 CCATTAAT
66 CCATTAAT
* * * * *
105656233 CGGGAAGCTC-TAGATAGCCATATATCGGGAAGTTCAAGCGAGCCAATATCGGGAAGCTCCGAGG
1 CGGGAAGCTCATA-AGAGCCATA-ATCAGGAAGCTCAAGCGAGCCAATAACGGGAAGCTCCGAAG
105656297 AGCCATTAAT
64 AGCCATTAAT
**
105656307 CAAGAAGCTCATAAAGAGCC
1 CGGGAAGCTCAT-AAGAGCC
105656327 TTTAATCGAG
Statistics
Matches: 78, Mismatches: 12, Indels: 6
0.81 0.12 0.06
Matches are distributed among these distances:
72 2 0.03
73 18 0.23
74 51 0.65
75 6 0.08
76 1 0.01
ACGTcount: A:0.34, C:0.22, G:0.26, T:0.18
Consensus pattern (73 bp):
CGGGAAGCTCATAAGAGCCATAATCAGGAAGCTCAAGCGAGCCAATAACGGGAAGCTCCGAAGAG
CCATTAAT
Found at i:105659145 original size:14 final size:13
Alignment explanation
Indices: 105659114--105659146 Score: 50
Period size: 13 Copynumber: 2.5 Consensus size: 13
105659104 GTTATTTGAC
105659114 AATT-TTTTCTAA
1 AATTATTTTCTAA
105659126 AATTATTTTCTAA
1 AATTATTTTCTAA
105659139 AAGTTATT
1 AA-TTATT
105659147 ATTTGTGAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
12 4 0.21
13 10 0.53
14 5 0.26
ACGTcount: A:0.36, C:0.06, G:0.03, T:0.55
Consensus pattern (13 bp):
AATTATTTTCTAA
Found at i:105659303 original size:28 final size:25
Alignment explanation
Indices: 105659248--105659304 Score: 60
Period size: 28 Copynumber: 2.2 Consensus size: 25
105659238 TAATATTTTG
* * *
105659248 TAATAATCAATATCATATGTAAATT
1 TAATAATAAATATCATATGAAAACT
105659273 TAATAATAAATAATGCATAATGAAAACT
1 TAATAATAAAT-AT-CAT-ATGAAAACT
105659301 TAAT
1 TAAT
105659305 TTAAATTACA
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
25 10 0.38
26 2 0.08
27 3 0.12
28 11 0.42
ACGTcount: A:0.53, C:0.07, G:0.05, T:0.35
Consensus pattern (25 bp):
TAATAATAAATATCATATGAAAACT
Found at i:105659858 original size:25 final size:25
Alignment explanation
Indices: 105659813--105659860 Score: 71
Period size: 25 Copynumber: 1.9 Consensus size: 25
105659803 TACTATAAAA
*
105659813 ATTTATTATTAATATTGTAATATAT
1 ATTTATTATTAAAATTGTAATATAT
105659838 ATTTATTATTAAAATAT-TAATAT
1 ATTTATTATTAAAAT-TGTAATAT
105659861 TAATATTAAT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
25 20 0.95
26 1 0.05
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.54
Consensus pattern (25 bp):
ATTTATTATTAAAATTGTAATATAT
Found at i:105660093 original size:38 final size:38
Alignment explanation
Indices: 105660038--105660112 Score: 91
Period size: 38 Copynumber: 2.0 Consensus size: 38
105660028 AATATGTATG
* *
105660038 TTTAATAATATTAAAAATT-ACATTATTTTTATTAATAT
1 TTTAATAATATTAAAAATTAAAATT-TTATTATTAATAT
*
105660076 TTTAAT-ATATTTTAAAATTAAAATTTTATTATTAATA
1 TTTAATAATA-TTAAAAATTAAAATTTTATTATTAATA
105660113 GAATGATATA
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
37 3 0.09
38 25 0.78
39 4 0.12
ACGTcount: A:0.45, C:0.01, G:0.00, T:0.53
Consensus pattern (38 bp):
TTTAATAATATTAAAAATTAAAATTTTATTATTAATAT
Found at i:105662930 original size:15 final size:16
Alignment explanation
Indices: 105662910--105662948 Score: 53
Period size: 16 Copynumber: 2.5 Consensus size: 16
105662900 GAATAATGAC
*
105662910 TCTAAATAC-ATTTGT
1 TCTAAATACAAGTTGT
105662925 TCTAAATACAAGTTGT
1 TCTAAATACAAGTTGT
*
105662941 TCCAAATA
1 TCTAAATA
105662949 ATAATTGGTC
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
15 9 0.43
16 12 0.57
ACGTcount: A:0.38, C:0.15, G:0.08, T:0.38
Consensus pattern (16 bp):
TCTAAATACAAGTTGT
Found at i:105663708 original size:21 final size:20
Alignment explanation
Indices: 105663675--105663717 Score: 59
Period size: 21 Copynumber: 2.1 Consensus size: 20
105663665 GTTCTAGTTC
105663675 TAAAAATTGTAAAATATATT
1 TAAAAATTGTAAAATATATT
* *
105663695 TAAAAATGTTTAAAATATTTT
1 TAAAAAT-TGTAAAATATATT
105663716 TA
1 TA
105663718 GGTTTACTTT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
20 7 0.35
21 13 0.65
ACGTcount: A:0.51, C:0.00, G:0.05, T:0.44
Consensus pattern (20 bp):
TAAAAATTGTAAAATATATT
Found at i:105664308 original size:2 final size:2
Alignment explanation
Indices: 105664301--105664328 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
105664291 AGTTGACGAA
105664301 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
105664329 TGGTATGAAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:105671078 original size:20 final size:20
Alignment explanation
Indices: 105671037--105671077 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
105671027 TTTAAAAATA
105671037 TTAAAATTTCTAATATATTT
1 TTAAAATTTCTAATATATTT
105671057 TTAAAATTT-TAAGTA-ATTT
1 TTAAAATTTCTAA-TATATTT
105671076 TT
1 TT
105671078 TTTATTTTTA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
19 9 0.45
20 11 0.55
ACGTcount: A:0.39, C:0.02, G:0.02, T:0.56
Consensus pattern (20 bp):
TTAAAATTTCTAATATATTT
Found at i:105671117 original size:21 final size:19
Alignment explanation
Indices: 105671048--105671139 Score: 69
Period size: 20 Copynumber: 4.5 Consensus size: 19
105671038 TAAAATTTCT
* *
105671048 AATATATTTTTAAAATTTTA
1 AATAT-TTTTTTAATTTTTA
* *
105671068 AGTAATTTTTTTTATTTTTA
1 AAT-ATTTTTTTAATTTTTA
*
105671088 TATTATTTTTTATAATTTTTA
1 -AATATTTTTT-TAATTTTTA
105671109 AATACTTTTTTT-ATCTTTTA
1 AATA-TTTTTTTAAT-TTTTA
105671129 AATATGTTTTT
1 AATAT-TTTTT
105671140 GGAATTTCTT
Statistics
Matches: 59, Mismatches: 7, Indels: 12
0.76 0.09 0.15
Matches are distributed among these distances:
19 3 0.05
20 38 0.64
21 18 0.31
ACGTcount: A:0.30, C:0.02, G:0.02, T:0.65
Consensus pattern (19 bp):
AATATTTTTTTAATTTTTA
Found at i:105671139 original size:41 final size:40
Alignment explanation
Indices: 105671047--105671139 Score: 100
Period size: 41 Copynumber: 2.3 Consensus size: 40
105671037 TTAAAATTTC
* *
105671047 TAATATATTTTTAAAATTTTAAGTAATTTTTTTTATTTTTA
1 TAATAT-TTTTTAAAATTTTAAATAACTTTTTTTATTTTTA
* *
105671088 TATTATTTTTTATAATTTTTAAAT-ACTTTTTTTATCTTTTA
1 TAATATTTTTTA-AAATTTTAAATAACTTTTTTTAT-TTTTA
105671129 -AATATGTTTTT
1 TAATAT-TTTTT
105671140 GGAATTTCTT
Statistics
Matches: 44, Mismatches: 5, Indels: 6
0.80 0.09 0.11
Matches are distributed among these distances:
40 20 0.45
41 24 0.55
ACGTcount: A:0.30, C:0.02, G:0.02, T:0.66
Consensus pattern (40 bp):
TAATATTTTTTAAAATTTTAAATAACTTTTTTTATTTTTA
Found at i:105675752 original size:92 final size:92
Alignment explanation
Indices: 105675595--105676092 Score: 597
Period size: 92 Copynumber: 5.4 Consensus size: 92
105675585 ATCCATACAT
* * * * * *
105675595 TAACATGCCAGTTTGCCCATAAAAGCAATTCCAACCGAGAACATGCCAGATGCACATAGTGCAAA
1 TAACACGCCAGATTGCTCATAAGAGCTATTCCAACCGAGAACATGCTAGATGCACATAGTGCAAA
* *
105675660 GCCCGTAGGCTAAATATTCTCTCCTGA
66 GCCCGTAGGCTAAATATTCTCCCCCGA
* * * * * *
105675687 TAACACGTCATG-TTGCTCATAAGAGCTATTCTAATCAATAACATGCTAGATGCGCATAGTGCAA
1 TAACACGCCA-GATTGCTCATAAGAGCTATTCCAACCGAGAACATGCTAGATGCACATAGTGCAA
105675751 AGCCCGTAGGCTAAATATTCTCCCCCGA
65 AGCCCGTAGGCTAAATATTCTCCCCCGA
* * * *
105675779 TAACATGCCAGATTGCTCATAAGAGCTATTCCAACCGAGAACACGTTAGATGCACATAGTACAAA
1 TAACACGCCAGATTGCTCATAAGAGCTATTCCAACCGAGAACATGCTAGATGCACATAGTGCAAA
105675844 GCCCGTAGGCTAAATATTCTCCCCCGA
66 GCCCGTAGGCTAAATATTCTCCCCCGA
* * *
105675871 TAACACACCAGATTGCTCATAAAAGCTATTCCAACCGAGAACATGTTAGATGCACATAGTGCAAA
1 TAACACGCCAGATTGCTCATAAGAGCTATTCCAACCGAGAACATGCTAGATGCACATAGTGCAAA
* *
105675936 GCCTGTAGGCTAAATATTCTCCCACGA
66 GCCCGTAGGCTAAATATTCTCCCCCGA
* * ** * * * *
105675963 TAATACACCAGATTGCTCATAAGATTTATTCCAACTGAGAACACGTTAGATGCACAT-GTGTAGA
1 TAACACGCCAGATTGCTCATAAGAGCTATTCCAACCGAGAACATGCTAGATGCACATAGTGCA-A
* *
105676027 A-CCCGTAAGCTAAATATTCTCCCCTGA
65 AGCCCGTAGGCTAAATATTCTCCCCCGA
* * * * * * *
105676054 TAACATGTCAAATTACTCATAAAAGTTATTCCAATCGAG
1 TAACACGCCAGATTGCTCATAAGAGCTATTCCAACCGAG
105676093 GACACGTTAG
Statistics
Matches: 352, Mismatches: 51, Indels: 7
0.86 0.12 0.02
Matches are distributed among these distances:
91 56 0.16
92 295 0.84
93 1 0.00
ACGTcount: A:0.34, C:0.25, G:0.16, T:0.24
Consensus pattern (92 bp):
TAACACGCCAGATTGCTCATAAGAGCTATTCCAACCGAGAACATGCTAGATGCACATAGTGCAAA
GCCCGTAGGCTAAATATTCTCCCCCGA
Found at i:105680697 original size:11 final size:11
Alignment explanation
Indices: 105680683--105680722 Score: 53
Period size: 11 Copynumber: 3.6 Consensus size: 11
105680673 TTTTTCTCCT
105680683 TATTTTGCTAC
1 TATTTTGCTAC
* *
105680694 TATTTTACTAT
1 TATTTTGCTAC
*
105680705 TATGTTGCTAC
1 TATTTTGCTAC
105680716 TATTTTG
1 TATTTTG
105680723 TTGTTATTGT
Statistics
Matches: 23, Mismatches: 6, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
11 23 1.00
ACGTcount: A:0.20, C:0.12, G:0.10, T:0.57
Consensus pattern (11 bp):
TATTTTGCTAC
Found at i:105680975 original size:12 final size:12
Alignment explanation
Indices: 105680945--105680977 Score: 52
Period size: 11 Copynumber: 2.9 Consensus size: 12
105680935 TATTTATTTT
105680945 AAAATT-ATATA
1 AAAATTAATATA
105680956 AAAA-TAATATA
1 AAAATTAATATA
105680967 AAAATTAATAT
1 AAAATTAATAT
105680978 GGGCGGGCCG
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
10 1 0.05
11 13 0.65
12 6 0.30
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (12 bp):
AAAATTAATATA
Found at i:105682092 original size:35 final size:34
Alignment explanation
Indices: 105682053--105682179 Score: 130
Period size: 35 Copynumber: 3.6 Consensus size: 34
105682043 CATGGAAAAT
*
105682053 TTGTGAAACGTAGGTATGGTATCATCCATACTAAG
1 TTGTGAAACGTAGGTATGGTAT-ATCCATACTGAG
* *
105682088 TTGTGAAATGTAAGTATGGTATTATCCATACTGAG
1 TTGTGAAACGTAGGTATGGTA-TATCCATACTGAG
** * *
105682123 TTAAGAAACATAGGTATGGCATATCCCATA-TCGAG
1 TTGTGAAACGTAGGTATGGTATAT-CCATACT-GAG
* *
105682158 TTGCGAAATGTAGGTATGGTAT
1 TTGTGAAACGTAGGTATGGTAT
105682180 TTAAATAAAG
Statistics
Matches: 75, Mismatches: 14, Indels: 6
0.79 0.15 0.06
Matches are distributed among these distances:
34 4 0.05
35 70 0.93
36 1 0.01
ACGTcount: A:0.32, C:0.12, G:0.24, T:0.32
Consensus pattern (34 bp):
TTGTGAAACGTAGGTATGGTATATCCATACTGAG
Found at i:105689155 original size:15 final size:16
Alignment explanation
Indices: 105689135--105689234 Score: 72
Period size: 15 Copynumber: 6.3 Consensus size: 16
105689125 GATAAATAAA
105689135 ATAAAAATAT-ATATG
1 ATAAAAATATAATATG
105689150 ATAAAATGTATATAATAT-
1 ATAAAA---ATATAATATG
*
105689168 ATAAAAATATCATATGG
1 ATAAAAATATAATAT-G
105689185 AGT-AAAATATAATATG
1 A-TAAAAATATAATATG
105689201 -TAATAAA-ATAATATG
1 ATAA-AAATATAATATG
105689216 A-AAACAA-ATAATAT-
1 ATAAA-AATATAATATG
105689230 ATAAA
1 ATAAA
105689235 TATAGTGAAA
Statistics
Matches: 71, Mismatches: 2, Indels: 24
0.73 0.02 0.25
Matches are distributed among these distances:
14 3 0.04
15 37 0.52
16 4 0.06
17 12 0.17
18 11 0.15
19 4 0.06
ACGTcount: A:0.60, C:0.02, G:0.07, T:0.31
Consensus pattern (16 bp):
ATAAAAATATAATATG
Found at i:105689193 original size:17 final size:17
Alignment explanation
Indices: 105689171--105689210 Score: 53
Period size: 17 Copynumber: 2.4 Consensus size: 17
105689161 ATAATATATA
* *
105689171 AAAATATCATATGGAGT
1 AAAATATAATATGGAAT
*
105689188 AAAATATAATATGTAAT
1 AAAATATAATATGGAAT
105689205 AAAATA
1 AAAATA
105689211 ATATGAAAAC
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.57, C:0.03, G:0.10, T:0.30
Consensus pattern (17 bp):
AAAATATAATATGGAAT
Found at i:105694409 original size:15 final size:15
Alignment explanation
Indices: 105694389--105694419 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
105694379 GGGCAGAAAC
105694389 TTATCTTTTTGAGGA
1 TTATCTTTTTGAGGA
105694404 TTATCTTTTTGAGGA
1 TTATCTTTTTGAGGA
105694419 T
1 T
105694420 GTTGTCAACG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.19, C:0.06, G:0.19, T:0.55
Consensus pattern (15 bp):
TTATCTTTTTGAGGA
Found at i:105695041 original size:5 final size:5
Alignment explanation
Indices: 105695031--105695080 Score: 50
Period size: 5 Copynumber: 9.6 Consensus size: 5
105695021 ATACTTAAGT
105695031 ATATA ATATA ATAATA GAT-TA ATATA ATA-A TATAATA ATATA ATATA
1 ATATA ATATA AT-ATA -ATATA ATATA ATATA -AT-ATA ATATA ATATA
105695078 ATA
1 ATA
105695081 AAACATAAAT
Statistics
Matches: 39, Mismatches: 0, Indels: 12
0.76 0.00 0.24
Matches are distributed among these distances:
4 3 0.08
5 27 0.69
6 6 0.15
7 3 0.08
ACGTcount: A:0.60, C:0.00, G:0.02, T:0.38
Consensus pattern (5 bp):
ATATA
Found at i:105695052 original size:24 final size:24
Alignment explanation
Indices: 105695025--105695081 Score: 77
Period size: 24 Copynumber: 2.5 Consensus size: 24
105695015 TACGTAATAC
105695025 TTAAGTAT-ATAATATAATAATAGA
1 TTAA-TATAATAATATAATAATAGA
105695049 TTAATATAATAATATAATAAT--A
1 TTAATATAATAATATAATAATAGA
105695071 -TAATATAATAA
1 TTAATATAATAA
105695082 AACATAAATA
Statistics
Matches: 32, Mismatches: 0, Indels: 5
0.86 0.00 0.14
Matches are distributed among these distances:
21 11 0.34
22 1 0.03
23 3 0.09
24 17 0.53
ACGTcount: A:0.58, C:0.00, G:0.04, T:0.39
Consensus pattern (24 bp):
TTAATATAATAATATAATAATAGA
Found at i:105695081 original size:8 final size:8
Alignment explanation
Indices: 105695033--105695075 Score: 68
Period size: 8 Copynumber: 5.4 Consensus size: 8
105695023 ACTTAAGTAT
105695033 ATAATATA
1 ATAATATA
*
105695041 ATAATAGA
1 ATAATATA
*
105695049 TTAATATA
1 ATAATATA
105695057 ATAATATA
1 ATAATATA
105695065 ATAATATA
1 ATAATATA
105695073 ATA
1 ATA
105695076 TAATAAAACA
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
8 31 1.00
ACGTcount: A:0.60, C:0.00, G:0.02, T:0.37
Consensus pattern (8 bp):
ATAATATA
Found at i:105695081 original size:16 final size:16
Alignment explanation
Indices: 105695031--105695080 Score: 61
Period size: 16 Copynumber: 3.2 Consensus size: 16
105695021 ATACTTAAGT
105695031 ATATAATATAATAATA
1 ATATAATATAATAATA
105695047 GAT-TAATATAATAAT-
1 -ATATAATATAATAATA
105695062 ATAATAATATAAT-ATA
1 AT-ATAATATAATAATA
105695078 ATA
1 ATA
105695081 AAACATAAAT
Statistics
Matches: 30, Mismatches: 0, Indels: 8
0.79 0.00 0.21
Matches are distributed among these distances:
14 2 0.07
15 3 0.10
16 23 0.77
17 2 0.07
ACGTcount: A:0.60, C:0.00, G:0.02, T:0.38
Consensus pattern (16 bp):
ATATAATATAATAATA
Found at i:105707370 original size:126 final size:126
Alignment explanation
Indices: 105707210--105707443 Score: 371
Period size: 126 Copynumber: 1.9 Consensus size: 126
105707200 GTTTTAGCCT
* *
105707210 TAAGAGAATATTCGAATATTCAAAACAAATAAAGAAAGCGAAACCCAGTACGTTAGGGCACGATT
1 TAAGAGAATATCCGAATATTCAAAACAAACAAAGAAAGCGAAACCCAGTACGTTAGGGCACGATT
* * *
105707275 CTTCGAATTCTTTAAATACCGACCATTGCCT-TTATTTTGAAAATTTTTTAGAGTGAACTGG
66 CTTCGAAGTCTTTAAATACCGAACATTG-CTATTATTTTAAAAATTTTTTAGAGTGAACTGG
* * *
105707336 TAAGAGGATATCCGAATATTCAAGACAAACAAAGAAAGCGAAACCCAGTACGTTAGGGTACGATT
1 TAAGAGAATATCCGAATATTCAAAACAAACAAAGAAAGCGAAACCCAGTACGTTAGGGCACGATT
*
105707401 CTTCGAAGTCTTTAAATACTGAACATTGCTATTATTTTAAAAA
66 CTTCGAAGTCTTTAAATACCGAACATTGCTATTATTTTAAAAA
105707444 CAATTGAGAA
Statistics
Matches: 98, Mismatches: 9, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
125 2 0.02
126 96 0.98
ACGTcount: A:0.39, C:0.16, G:0.17, T:0.29
Consensus pattern (126 bp):
TAAGAGAATATCCGAATATTCAAAACAAACAAAGAAAGCGAAACCCAGTACGTTAGGGCACGATT
CTTCGAAGTCTTTAAATACCGAACATTGCTATTATTTTAAAAATTTTTTAGAGTGAACTGG
Found at i:105708009 original size:18 final size:18
Alignment explanation
Indices: 105707986--105708027 Score: 50
Period size: 18 Copynumber: 2.3 Consensus size: 18
105707976 ATAATGCTAC
*
105707986 AATAACCA-TAAACATAGT
1 AATAACCATTAAA-ATAAT
*
105708004 AATAACGATTAAAATAAT
1 AATAACCATTAAAATAAT
105708022 AATAAC
1 AATAAC
105708028 AACAACAAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
18 17 0.81
19 4 0.19
ACGTcount: A:0.60, C:0.12, G:0.05, T:0.24
Consensus pattern (18 bp):
AATAACCATTAAAATAAT
Found at i:105708052 original size:3 final size:3
Alignment explanation
Indices: 105708046--105708216 Score: 89
Period size: 3 Copynumber: 56.7 Consensus size: 3
105708036 AATAGAAGAC
* * * * *
105708046 AAT AAT AAA AAT -AT ATT AAT AAA AAT AAT AAT -AT AAA AAT AAT AAA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
* ** ** *
105708092 AAT AAA AAT -AT GTT TCT AAT AAT AAT AAT AAAT CAAT AAT GAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT -AAT -AAT AAT AAT AAT
* * * * *
105708138 AAAT ATAT ACAA AAT AAT AGT AAC AGT AAT AA- AAT AAT AAT AAT ATT
1 -AAT A-AT A-AT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
* * * *
105708185 AAT AAT ATT ATT AAT AAT AAT ATT AAA AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
105708217 CACTCTCCCC
Statistics
Matches: 124, Mismatches: 37, Indels: 14
0.71 0.21 0.08
Matches are distributed among these distances:
2 8 0.06
3 102 0.82
4 14 0.11
ACGTcount: A:0.63, C:0.02, G:0.02, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:105708067 original size:14 final size:14
Alignment explanation
Indices: 105708049--105708102 Score: 65
Period size: 14 Copynumber: 3.8 Consensus size: 14
105708039 AGAAGACAAT
*
105708049 AATAAAAATATATT
1 AATAAAAATATATA
105708063 AATAAAAATA-ATA
1 AATAAAAATATATA
*
105708076 ATATAAAAATAATAAA
1 A-ATAAAAAT-ATATA
105708092 AATAAAAATAT
1 AATAAAAATAT
105708103 GTTTCTAATA
Statistics
Matches: 35, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
13 3 0.09
14 20 0.57
15 9 0.26
16 3 0.09
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (14 bp):
AATAAAAATATATA
Found at i:105708073 original size:23 final size:23
Alignment explanation
Indices: 105708046--105708123 Score: 63
Period size: 23 Copynumber: 3.4 Consensus size: 23
105708036 AATAGAAGAC
105708046 AATAATAAAAATATATTAATAAA
1 AATAATAAAAATATATTAATAAA
*
105708069 AATAATAATATAA-A-AATAATAAA
1 AATAATAA-A-AATATATTAATAAA
* * * *
105708092 AATAA-AAATATGTTTCTAATAAT
1 AATAATAAAAATATAT-TAATAAA
105708115 AATAATAAA
1 AATAATAAA
105708124 TCAATAATGA
Statistics
Matches: 43, Mismatches: 6, Indels: 11
0.72 0.10 0.18
Matches are distributed among these distances:
20 1 0.02
21 1 0.02
22 2 0.05
23 32 0.74
24 5 0.12
25 2 0.05
ACGTcount: A:0.67, C:0.01, G:0.01, T:0.31
Consensus pattern (23 bp):
AATAATAAAAATATATTAATAAA
Found at i:105708078 original size:20 final size:20
Alignment explanation
Indices: 105708049--105708189 Score: 74
Period size: 20 Copynumber: 7.0 Consensus size: 20
105708039 AGAAGACAAT
*
105708049 AATAAAAATATATTAATAAA
1 AATAATAATATATTAATAAA
*
105708069 AATAATAATATAAAAATAATAAA
1 AATAATAATAT---ATTAATAAA
* * ** *
105708092 AATAAAAATATGTTTCTAAT
1 AATAATAATATATTAATAAA
* * *
105708112 AATAATAATAAATCAATAAT
1 AATAATAATATATTAATAAA
*
105708132 GATAATAA-ATA-T-ATACAA
1 AATAATAATATATTAATA-AA
* * *
105708150 AATAATAGTAACAGTAAT-AA
1 AATAATAAT-ATATTAATAAA
105708170 AATAATAATAATATTAATAA
1 AATAATAAT-ATATTAATAA
105708190 TATTATTAAT
Statistics
Matches: 88, Mismatches: 24, Indels: 17
0.68 0.19 0.13
Matches are distributed among these distances:
17 3 0.03
18 7 0.08
19 2 0.02
20 54 0.61
21 2 0.02
22 2 0.02
23 18 0.20
ACGTcount: A:0.64, C:0.03, G:0.03, T:0.30
Consensus pattern (20 bp):
AATAATAATATATTAATAAA
Found at i:105708139 original size:43 final size:43
Alignment explanation
Indices: 105708046--105708216 Score: 118
Period size: 43 Copynumber: 4.0 Consensus size: 43
105708036 AATAGAAGAC
105708046 AATAATAAAAATATATTAATAAAAATAATAATATAAAAATAAT
1 AATAATAAAAATATATTAATAAAAATAATAATATAAAAATAAT
* * ** * *
105708089 AAAAATAAAAATATGTTTCTAATAATAATAATA-AATCAATAAT
1 AATAATAAAAATATATTAATAAAAATAATAATATAA-AAATAAT
* * * * * *
105708132 GATAATAAATATATA-CAA-AATAATAGTAACAGTAATAAAATAAT
1 AATAATAAAAATATATTAATAAAAATAATAATA-T-A-AAAATAAT
** * *
105708176 AATAATATTAATAATATTATTAATAATAAT-AT-TAAAAATAA
1 AATAATAAAAAT-ATATTAATAAAAATAATAATATAAAAATAA
105708217 CACTCTCCCC
Statistics
Matches: 96, Mismatches: 24, Indels: 17
0.70 0.18 0.12
Matches are distributed among these distances:
41 11 0.11
42 9 0.09
43 46 0.48
44 16 0.17
45 4 0.04
46 2 0.02
47 8 0.08
ACGTcount: A:0.63, C:0.02, G:0.02, T:0.32
Consensus pattern (43 bp):
AATAATAAAAATATATTAATAAAAATAATAATATAAAAATAAT
Found at i:105708621 original size:29 final size:30
Alignment explanation
Indices: 105708579--105708646 Score: 102
Period size: 29 Copynumber: 2.3 Consensus size: 30
105708569 TTTGTAGGCA
*
105708579 AGTGGGGTGATGGAGATAGT-GGATGGTTT
1 AGTGGGGTGATGGAGATAGTGGGATGATTT
*
105708608 AGTGGGGTGATGGAGTTAGTGGGATGATTT
1 AGTGGGGTGATGGAGATAGTGGGATGATTT
*
105708638 AGTAGGGTG
1 AGTGGGGTG
105708647 TGGGGGTGAT
Statistics
Matches: 35, Mismatches: 3, Indels: 1
0.90 0.08 0.03
Matches are distributed among these distances:
29 19 0.54
30 16 0.46
ACGTcount: A:0.21, C:0.00, G:0.49, T:0.31
Consensus pattern (30 bp):
AGTGGGGTGATGGAGATAGTGGGATGATTT
Found at i:105708628 original size:17 final size:17
Alignment explanation
Indices: 105708579--105708635 Score: 52
Period size: 17 Copynumber: 3.6 Consensus size: 17
105708569 TTTGTAGGCA
*
105708579 AGTGGGGTGATGGAGAT
1 AGTGGGGTGATGGAGTT
*
105708596 AGT---G-GATGG-TTT
1 AGTGGGGTGATGGAGTT
105708608 AGTGGGGTGATGGAGTT
1 AGTGGGGTGATGGAGTT
*
105708625 AGTGGGATGAT
1 AGTGGGGTGAT
105708636 TTAGTAGGGT
Statistics
Matches: 31, Mismatches: 4, Indels: 10
0.69 0.09 0.22
Matches are distributed among these distances:
12 4 0.13
13 5 0.16
14 1 0.03
15 1 0.03
16 5 0.16
17 15 0.48
ACGTcount: A:0.21, C:0.00, G:0.49, T:0.30
Consensus pattern (17 bp):
AGTGGGGTGATGGAGTT
Found at i:105709170 original size:133 final size:134
Alignment explanation
Indices: 105708933--105709241 Score: 444
Period size: 133 Copynumber: 2.3 Consensus size: 134
105708923 GATCTGCTGT
* * * *
105708933 AATTTGATCTGCTTTACTCATGCTCAGTAAAGATAAGATCTGGTATGTTTAGCCTGCTCCACTCC
1 AATTTGATCTGCTTCACTCCTGCTCAGTGAAGATAAGATCTAGTA-GTTTAGCCTGCTCCACTCC
* * *
105708998 TGCTCAGTGAAGATAAGACTGATGATTGGAATCTGCTCCATTGCCGATACATGGAGATAAGA-TT
65 TGCTCAGTGAAGATAAGACTGATGACTGAAATCTACTCCATTGCCGATACATGGAGATAAGACTT
105709062 -CATCAA
130 GC--CAA
* **
105709068 AATTTGATCTGCTTCGCTCCTGCTCAACGAAGATAAGATCTAGTA-TTTAGCCTGCTCCACTCCT
1 AATTTGATCTGCTTCACTCCTGCTCAGTGAAGATAAGATCTAGTAGTTTAGCCTGCTCCACTCCT
* * * *
105709132 GCTCAGTGAAGATAAGGCTGGTGGCTGAAATCTACTCCATTGCCGTTACATGGAGATAAGACTTG
66 GCTCAGTGAAGATAAGACTGATGACTGAAATCTACTCCATTGCCGATACATGGAGATAAGACTTG
105709197 CCAA
131 CCAA
105709201 AATTTGATCTGCTTCACTCCTGCTCAGTGAAGATAAGATCT
1 AATTTGATCTGCTTCACTCCTGCTCAGTGAAGATAAGATCT
105709242 GTCGAAATTT
Statistics
Matches: 155, Mismatches: 17, Indels: 6
0.87 0.10 0.03
Matches are distributed among these distances:
133 114 0.74
134 2 0.01
135 39 0.25
ACGTcount: A:0.28, C:0.22, G:0.20, T:0.30
Consensus pattern (134 bp):
AATTTGATCTGCTTCACTCCTGCTCAGTGAAGATAAGATCTAGTAGTTTAGCCTGCTCCACTCCT
GCTCAGTGAAGATAAGACTGATGACTGAAATCTACTCCATTGCCGATACATGGAGATAAGACTTG
CCAA
Found at i:105709252 original size:46 final size:46
Alignment explanation
Indices: 105708933--105709902 Score: 232
Period size: 46 Copynumber: 21.6 Consensus size: 46
105708923 GATCTGCTGT
** * *
105708933 AATTTGATCTGCTTTACTCATGCTCAGTAAAGATAAGATCTG--G-
1 AATTTGATCTGCTCCACTCCTGCTCAGTGAAGATAAGATCTGTCGA
* * *
105708976 TATGTTTAGCCTGCTCCACTCCTGCTCAGTGAAGATAAGA-CTGAT-G-
1 AAT-TTGA-TCTGCTCCACTCCTGCTCAGTGAAGATAAGATCTG-TCGA
* * * * * *
105709022 -ATTGGAATCTGCTCCATTGCC-GATACA-TGGAGATAAGAT-TCATCAA
1 AATTTG-ATCTGCTCCACT-CCTGCT-CAGTGAAGATAAGATCT-GTCGA
* * **
105709068 AATTTGATCTGCTTCGCTCCTGCTCAACGAAGATAAGATCTAGT---
1 AATTTGATCTGCTCCACTCCTGCTCAGTGAAGATAAGATCT-GTCGA
* *
105709112 -ATTT-AGCCTGCTCCACTCCTGCTCAGTGAAGATAAG-GCTGGT-G-
1 AATTTGA-TCTGCTCCACTCCTGCTCAGTGAAGATAAGATCT-GTCGA
** *** * * * * * *
105709155 GCTGAAATCTACTCCATTGCC-GTTACA-TGGAGATAAGA-CTTGCCAA
1 AATTTGATCTGCTCCACT-CCTGCT-CAGTGAAGATAAGATC-TGTCGA
*
105709201 AATTTGATCTGCTTCACTCCTGCTCAGTGAAGATAAGATCTGTCGA
1 AATTTGATCTGCTCCACTCCTGCTCAGTGAAGATAAGATCTGTCGA
** * *
105709247 AATTTGATCTGCTTTACTCTTGCTCAGTAAAGATAAGATCTG--G-
1 AATTTGATCTGCTCCACTCCTGCTCAGTGAAGATAAGATCTGTCGA
* * * * * *
105709290 TATGTTTAGCCTGATCCACTCCTACTCAGTGAAGATAAG-GCTGAT-G-
1 AAT-TTGA-TCTGCTCCACTCCTGCTCAGTGAAGATAAGATCTG-TCGA
* * * * * *
105709336 -ATTGGAATCTGCTCCATTACC-GATACA-TGGAGATAAGAT-TCATCAA
1 AATTTG-ATCTGCTCCACT-CCTGCT-CAGTGAAGATAAGATCT-GTCGA
* *
105709382 AATTTGATCTGCTCCGCTCCTGCTCAGCGAAGATAAGATCTAGT---
1 AATTTGATCTGCTCCACTCCTGCTCAGTGAAGATAAGATCT-GTCGA
* * *
105709426 -ATTT-AGCCTGCTCCACTCTTGCTCAGTGAAGATAAG-GCTGGT-G-
1 AATTTGA-TCTGCTCCACTCCTGCTCAGTGAAGATAAGATCT-GTCGA
** *** * * * * * *
105709469 GCTGAAATCTACTCCATTTCC-GTTACA-TGGAGATAAGA-CTTGCCAA
1 AATTTGATCTGCTCCA-CTCCTGCT-CAGTGAAGATAAGATC-TGTCGA
* *
105709515 AATTTGATCTGCTTCACTTCTGCTCAGTGAAGATAAGATCTGTCGA
1 AATTTGATCTGCTCCACTCCTGCTCAGTGAAGATAAGATCTGTCGA
** ** *
105709561 AATTTGATCTGCTTTACTTATGCTCAGTAAAGATAAGATCTG--G-
1 AATTTGATCTGCTCCACTCCTGCTCAGTGAAGATAAGATCTGTCGA
* * * *
105709604 TATGTTTAGCCTGCTCCACTCCTGCTCAGTGAAGATAAG-GCTGAT-G-
1 AAT-TTGA-TCTGCTCCACTCCTGCTCAGTGAAGATAAGATCTG-TCGA
* * * * * *
105709650 -ATTAGAATCTGCTCCATTGCC-GATACA-TGGAGATAAGAT-TCATCAA
1 AATTTG-ATCTGCTCCACT-CCTGCT-CAGTGAAGATAAGATCT-GTCGA
* **
105709696 AATTTGATCTGCTCCGCTCCTGCTCAACGAAGATAAGATCTAGT---
1 AATTTGATCTGCTCCACTCCTGCTCAGTGAAGATAAGATCT-GTCGA
* * * * *
105709740 -ATTT-AGCCTGCTCAACTCCTGCTCAATGAAGATAAG-GCTGGCG-
1 AATTTGA-TCTGCTCCACTCCTGCTCAGTGAAGATAAGATCTGTCGA
** *** * * * * *
105709783 GCTGAAATCTACTCCATTGCCAT--TACA-TGGAGATAAGA-CTTGCCAA
1 AATTTGATCTGCTCCACT-CC-TGCT-CAGTGAAGATAAGATC-TGTCGA
*
105709829 AATTTGATCTGCTTCACTCCTGCTCAGTGAAGATAAGATCTGTCGA
1 AATTTGATCTGCTCCACTCCTGCTCAGTGAAGATAAGATCTGTCGA
* *
105709875 AATTTGATCTGTTCCACTCCAGC-CAGTG
1 AATTTGATCTGCTCCACTCCTGCTCAGTG
105709903 GGATGAGATC
Statistics
Matches: 667, Mismatches: 174, Indels: 170
0.66 0.17 0.17
Matches are distributed among these distances:
41 1 0.00
42 13 0.02
43 95 0.14
44 151 0.23
45 143 0.21
46 243 0.36
47 21 0.03
ACGTcount: A:0.28, C:0.22, G:0.20, T:0.31
Consensus pattern (46 bp):
AATTTGATCTGCTCCACTCCTGCTCAGTGAAGATAAGATCTGTCGA
Found at i:105709353 original size:181 final size:178
Alignment explanation
Indices: 105709067--105709422 Score: 489
Period size: 181 Copynumber: 2.0 Consensus size: 178
105709057 AGATTCATCA
* * *
105709067 AAATTTGATCTGCTTCGCTCCTGCTCAACGAAGATAAGATCTAGTATTTAGCCTGCTCCACTCCT
1 AAATTTGATCTGCTTCACTCCTGCTCAACAAAGATAAGATCTAGTATTTAGCCTGATCCACTCCT
* * * * *
105709132 GCTCAGTGAAGATAAGGCTGGTGGCTGAAATCTACTCCATTGCCGTTACATGGAGATAAGACTTG
66 ACTCAGTGAAGATAAGGCTGATGACTGAAATCTACTCCATTACCGATACATGGAGATAAGA-TT-
* *
105709197 C-CAAAATTTGATCTGCTTCACTCCTGCTCAGTGAAGATAAGATCTGTCG
129 CACAAAATTTGATCTGCTCCACTCCTGCTCAGCGAAGATAAGATCTGTCG
* * ** *
105709246 AAATTTGATCTGCTTTACTCTTGCTCAGTAAAGATAAGATCTGGTATGTTTAGCCTGATCCACTC
1 AAATTTGATCTGCTTCACTCCTGCTCAACAAAGATAAGATCTAGTA--TTTAGCCTGATCCACTC
* * *
105709311 CTACTCAGTGAAGATAAGGCTGATGATTGGAATCTGCTCCATTACCGATACATGGAGATAAGATT
64 CTACTCAGTGAAGATAAGGCTGATGACTGAAATCTACTCCATTACCGATACATGGAGATAAGATT
*
105709376 CATCAAAATTTGATCTGCTCCGCTCCTGCTCAGCGAAGATAAGATCT
129 CA-CAAAATTTGATCTGCTCCACTCCTGCTCAGCGAAGATAAGATCT
105709423 AGTATTTAGC
Statistics
Matches: 154, Mismatches: 19, Indels: 6
0.86 0.11 0.03
Matches are distributed among these distances:
179 40 0.26
180 2 0.01
181 112 0.73
ACGTcount: A:0.28, C:0.22, G:0.20, T:0.30
Consensus pattern (178 bp):
AAATTTGATCTGCTTCACTCCTGCTCAACAAAGATAAGATCTAGTATTTAGCCTGATCCACTCCT
ACTCAGTGAAGATAAGGCTGATGACTGAAATCTACTCCATTACCGATACATGGAGATAAGATTCA
CAAAATTTGATCTGCTCCACTCCTGCTCAGCGAAGATAAGATCTGTCG
Found at i:105709484 original size:133 final size:134
Alignment explanation
Indices: 105709246--105709555 Score: 410
Period size: 133 Copynumber: 2.3 Consensus size: 134
105709236 AGATCTGTCG
* * * *
105709246 AAATTTGATCTGCTTTACTCTTGCTCAGTAAAGATAAGATCTGGTATGTTTAGCCTGATCCACTC
1 AAATTTGATCTGCTTCACTCCTGCTCAGTGAAGATAAGATCTAGTA-GTTTAGCCTGATCCACTC
* * *
105709311 CTACTCAGTGAAGATAAGGCTGATGATTGGAATCTGCTCCATTACCGATACATGGAGATAAGA-T
65 CTACTCAGTGAAGATAAGGCTGATGACTGAAATCTACTCCATTACCGATACATGGAGATAAGACT
105709375 T-CATCA
130 TGC--CA
* * * * *
105709381 AAATTTGATCTGCTCCGCTCCTGCTCAGCGAAGATAAGATCTAGTA-TTTAGCCTGCTCCACTCT
1 AAATTTGATCTGCTTCACTCCTGCTCAGTGAAGATAAGATCTAGTAGTTTAGCCTGATCCACTCC
* * * * *
105709445 TGCTCAGTGAAGATAAGGCTGGTGGCTGAAATCTACTCCATTTCCGTTACATGGAGATAAGACTT
66 TACTCAGTGAAGATAAGGCTGATGACTGAAATCTACTCCATTACCGATACATGGAGATAAGACTT
105709510 GCCA
131 GCCA
*
105709514 AAATTTGATCTGCTTCACTTCTGCTCAGTGAAGATAAGATCT
1 AAATTTGATCTGCTTCACTCCTGCTCAGTGAAGATAAGATCT
105709556 GTCGAAATTT
Statistics
Matches: 152, Mismatches: 21, Indels: 6
0.85 0.12 0.03
Matches are distributed among these distances:
133 110 0.72
134 2 0.01
135 40 0.26
ACGTcount: A:0.28, C:0.21, G:0.20, T:0.31
Consensus pattern (134 bp):
AAATTTGATCTGCTTCACTCCTGCTCAGTGAAGATAAGATCTAGTAGTTTAGCCTGATCCACTCC
TACTCAGTGAAGATAAGGCTGATGACTGAAATCTACTCCATTACCGATACATGGAGATAAGACTT
GCCA
Found at i:105709502 original size:314 final size:314
Alignment explanation
Indices: 105708933--105709885 Score: 1755
Period size: 314 Copynumber: 3.0 Consensus size: 314
105708923 GATCTGCTGT
*
105708933 AATTTGATCTGCTTTACTCATGCTCAGTAAAGATAAGATCTGGTATGTTTAGCCTGCTCCACTCC
1 AATTTGATCTGCTTTACTCTTGCTCAGTAAAGATAAGATCTGGTATGTTTAGCCTGCTCCACTCC
*
105708998 TGCTCAGTGAAGATAAGACTGATGATTGGAATCTGCTCCATTGCCGATACATGGAGATAAGATTC
66 TGCTCAGTGAAGATAAGGCTGATGATTGGAATCTGCTCCATTGCCGATACATGGAGATAAGATTC
*
105709063 ATCAAAATTTGATCTGCTTCGCTCCTGCTCAACGAAGATAAGATCTAGTATTTAGCCTGCTCCAC
131 ATCAAAATTTGATCTGCTCCGCTCCTGCTCAACGAAGATAAGATCTAGTATTTAGCCTGCTCCAC
105709128 TCCTGCTCAGTGAAGATAAGGCTGGTGGCTGAAATCTACTCCATTGCCGTTACATGGAGATAAGA
196 TCCTGCTCAGTGAAGATAAGGCTGGTGGCTGAAATCTACTCCATTGCCGTTACATGGAGATAAGA
105709193 CTTGCCAAAATTTGATCTGCTTCACTCCTGCTCAGTGAAGATAAGATCTGTCGA
261 CTTGCCAAAATTTGATCTGCTTCACTCCTGCTCAGTGAAGATAAGATCTGTCGA
*
105709247 AATTTGATCTGCTTTACTCTTGCTCAGTAAAGATAAGATCTGGTATGTTTAGCCTGATCCACTCC
1 AATTTGATCTGCTTTACTCTTGCTCAGTAAAGATAAGATCTGGTATGTTTAGCCTGCTCCACTCC
* *
105709312 TACTCAGTGAAGATAAGGCTGATGATTGGAATCTGCTCCATTACCGATACATGGAGATAAGATTC
66 TGCTCAGTGAAGATAAGGCTGATGATTGGAATCTGCTCCATTGCCGATACATGGAGATAAGATTC
*
105709377 ATCAAAATTTGATCTGCTCCGCTCCTGCTCAGCGAAGATAAGATCTAGTATTTAGCCTGCTCCAC
131 ATCAAAATTTGATCTGCTCCGCTCCTGCTCAACGAAGATAAGATCTAGTATTTAGCCTGCTCCAC
* *
105709442 TCTTGCTCAGTGAAGATAAGGCTGGTGGCTGAAATCTACTCCATTTCCGTTACATGGAGATAAGA
196 TCCTGCTCAGTGAAGATAAGGCTGGTGGCTGAAATCTACTCCATTGCCGTTACATGGAGATAAGA
*
105709507 CTTGCCAAAATTTGATCTGCTTCACTTCTGCTCAGTGAAGATAAGATCTGTCGA
261 CTTGCCAAAATTTGATCTGCTTCACTCCTGCTCAGTGAAGATAAGATCTGTCGA
105709561 AATTTGATCTGCTTTACT-TATGCTCAGTAAAGATAAGATCTGGTATGTTTAGCCTGCTCCACTC
1 AATTTGATCTGCTTTACTCT-TGCTCAGTAAAGATAAGATCTGGTATGTTTAGCCTGCTCCACTC
*
105709625 CTGCTCAGTGAAGATAAGGCTGATGATTAGAATCTGCTCCATTGCCGATACATGGAGATAAGATT
65 CTGCTCAGTGAAGATAAGGCTGATGATTGGAATCTGCTCCATTGCCGATACATGGAGATAAGATT
*
105709690 CATCAAAATTTGATCTGCTCCGCTCCTGCTCAACGAAGATAAGATCTAGTATTTAGCCTGCTCAA
130 CATCAAAATTTGATCTGCTCCGCTCCTGCTCAACGAAGATAAGATCTAGTATTTAGCCTGCTCCA
* * *
105709755 CTCCTGCTCAATGAAGATAAGGCTGGCGGCTGAAATCTACTCCATTGCCATTACATGGAGATAAG
195 CTCCTGCTCAGTGAAGATAAGGCTGGTGGCTGAAATCTACTCCATTGCCGTTACATGGAGATAAG
105709820 ACTTGCCAAAATTTGATCTGCTTCACTCCTGCTCAGTGAAGATAAGATCTGTCGA
260 ACTTGCCAAAATTTGATCTGCTTCACTCCTGCTCAGTGAAGATAAGATCTGTCGA
105709875 AATTTGATCTG
1 AATTTGATCTG
105709886 TTCCACTCCA
Statistics
Matches: 616, Mismatches: 22, Indels: 2
0.96 0.03 0.00
Matches are distributed among these distances:
313 1 0.00
314 615 1.00
ACGTcount: A:0.28, C:0.22, G:0.20, T:0.31
Consensus pattern (314 bp):
AATTTGATCTGCTTTACTCTTGCTCAGTAAAGATAAGATCTGGTATGTTTAGCCTGCTCCACTCC
TGCTCAGTGAAGATAAGGCTGATGATTGGAATCTGCTCCATTGCCGATACATGGAGATAAGATTC
ATCAAAATTTGATCTGCTCCGCTCCTGCTCAACGAAGATAAGATCTAGTATTTAGCCTGCTCCAC
TCCTGCTCAGTGAAGATAAGGCTGGTGGCTGAAATCTACTCCATTGCCGTTACATGGAGATAAGA
CTTGCCAAAATTTGATCTGCTTCACTCCTGCTCAGTGAAGATAAGATCTGTCGA
Found at i:105709679 original size:181 final size:178
Alignment explanation
Indices: 105709402--105709736 Score: 467
Period size: 181 Copynumber: 1.9 Consensus size: 178
105709392 GCTCCGCTCC
* * *
105709402 TGCTCAGCGAAGATAAGATCTAGTATTTAGCCTGCTCCACTCTTGCTCAGTGAAGATAAGGCTGG
1 TGCTCAGCAAAGATAAGATCTAGTATTTAGCCTGCTCCACTCCTGCTCAGTGAAGATAAGGCTGA
* * * *
105709467 TGGCTGAAATCTACTCCATTTCCGTTACATGGAGATAAGACTTGC-CAAAATTTGATCTGCTTCA
66 TGACTGAAATCTACTCCATTGCCGATACATGGAGATAAGA-TT-CACAAAATTTGATCTGCTCCA
* **
105709531 CTTCTGCTCAGTGAAGATAAGATCTGTCGAAATTTGATCTGCTTTACTTA
129 CTCCTGCTCAACGAAGATAAGATCTGTCGAAATTTGATCTGCTTTACTTA
* *
105709581 TGCTCAGTAAAGATAAGATCTGGTATGTTTAGCCTGCTCCACTCCTGCTCAGTGAAGATAAGGCT
1 TGCTCAGCAAAGATAAGATCTAGTA--TTTAGCCTGCTCCACTCCTGCTCAGTGAAGATAAGGCT
* *
105709646 GATGA-TTAGAATCTGCTCCATTGCCGATACATGGAGATAAGATTCATCAAAATTTGATCTGCTC
64 GATGACTGA-AATCTACTCCATTGCCGATACATGGAGATAAGATTCA-CAAAATTTGATCTGCTC
*
105709710 CGCTCCTGCTCAACGAAGATAAGATCT
127 CACTCCTGCTCAACGAAGATAAGATCT
105709737 AGTATTTAGC
Statistics
Matches: 136, Mismatches: 15, Indels: 8
0.86 0.09 0.05
Matches are distributed among these distances:
179 23 0.17
180 4 0.03
181 109 0.80
ACGTcount: A:0.28, C:0.21, G:0.20, T:0.31
Consensus pattern (178 bp):
TGCTCAGCAAAGATAAGATCTAGTATTTAGCCTGCTCCACTCCTGCTCAGTGAAGATAAGGCTGA
TGACTGAAATCTACTCCATTGCCGATACATGGAGATAAGATTCACAAAATTTGATCTGCTCCACT
CCTGCTCAACGAAGATAAGATCTGTCGAAATTTGATCTGCTTTACTTA
Found at i:105709798 original size:133 final size:134
Alignment explanation
Indices: 105709590--105709869 Score: 372
Period size: 133 Copynumber: 2.1 Consensus size: 134
105709580 ATGCTCAGTA
* * * * *
105709590 AAGATAAGATCTGGTATGTTTAGCCTGCTCCACTCCTGCTCAGTGAAGATAAGGCTGATGATTAG
1 AAGATAAGATCTAGTA-GTTTAGCCTGCTCAACTCCTGCTCAATGAAGATAAGGCTGAGGATGAG
* *
105709655 AATCTGCTCCATTGCCGA-TACATGGAGATAAGA-TT-CATCAAAATTTGATCTGCTCCGCTCCT
65 AATCTACTCCATTGCC-ATTACATGGAGATAAGACTTGC--CAAAATTTGATCTGCTCCACTCCT
105709717 GCTCAACG
127 GCTCAACG
* *
105709725 AAGATAAGATCTAGTA-TTTAGCCTGCTCAACTCCTGCTCAATGAAGATAAGGCTGGCGGCTGA-
1 AAGATAAGATCTAGTAGTTTAGCCTGCTCAACTCCTGCTCAATGAAGATAAGGCT-GAGGATGAG
*
105709788 AATCTACTCCATTGCCATTACATGGAGATAAGACTTGCCAAAATTTGATCTGCTTCACTCCTGCT
65 AATCTACTCCATTGCCATTACATGGAGATAAGACTTGCCAAAATTTGATCTGCTCCACTCCTGCT
**
105709853 CAGTG
130 CAACG
105709858 AAGATAAGATCT
1 AAGATAAGATCT
105709870 GTCGAAATTT
Statistics
Matches: 129, Mismatches: 12, Indels: 10
0.85 0.08 0.07
Matches are distributed among these distances:
132 1 0.01
133 106 0.82
134 6 0.05
135 16 0.12
ACGTcount: A:0.29, C:0.23, G:0.20, T:0.29
Consensus pattern (134 bp):
AAGATAAGATCTAGTAGTTTAGCCTGCTCAACTCCTGCTCAATGAAGATAAGGCTGAGGATGAGA
ATCTACTCCATTGCCATTACATGGAGATAAGACTTGCCAAAATTTGATCTGCTCCACTCCTGCTC
AACG
Found at i:105710006 original size:85 final size:85
Alignment explanation
Indices: 105709908--105710685 Score: 1154
Period size: 85 Copynumber: 9.2 Consensus size: 85
105709898 CAGTGGGATG
* * *
105709908 AGATCTG-CAATTTTAGCCTGTTACCCTACTGCTTAGGGGATTAA-GCTGAGTCTTCGACCTACT
1 AGATCTGTAAATTTTAGCCTGTTACCCTACTGCTTAGGGGGTTAAGGC-GAGTCTTCGACCTGCT
* *
105709971 CCACCACTGCTCGGAGAG-CT
65 CCACCACTGCTCGGCGAGCCC
*
105709991 AGGATCTGTAAATTTTAGCCTATTACCCTACTGCTTAGGGGGTTAAGGCG-GATCTTCGACCTGC
1 A-GATCTGTAAATTTTAGCCTGTTACCCTACTGCTTAGGGGGTTAAGGCGAG-TCTTCGACCTGC
*
105710055 TCCACCACTGCTCGGTGAGCCC
64 TCCACCACTGCTCGGCGAGCCC
* * * *
105710077 AAATCTGTAAACTTTAGCCTGTTACCCTACTGTTTAAGGGGTTAAGGCGAGTCTTCGACCTGCTC
1 AGATCTGTAAATTTTAGCCTGTTACCCTACTGCTTAGGGGGTTAAGGCGAGTCTTCGACCTGCTC
* *
105710142 CAACACTACTCGGCGAGCCC
66 CACCACTGCTCGGCGAGCCC
* * *
105710162 AGATTTGTAAATTTTAGCCTGTTACCCTATTGCTTAGGGGTTTAAGGCGAGTCTTCGACCTGCTC
1 AGATCTGTAAATTTTAGCCTGTTACCCTACTGCTTAGGGGGTTAAGGCGAGTCTTCGACCTGCTC
*
105710227 CACCACTGCTCGGTGAGCCC
66 CACCACTGCTCGGCGAGCCC
* * *
105710247 AGATCTGTAAATTGTAGCCTGTTACCCTACTGTTTAGGGGGTTAAGGCGAGTCTTCGACTTGCTC
1 AGATCTGTAAATTTTAGCCTGTTACCCTACTGCTTAGGGGGTTAAGGCGAGTCTTCGACCTGCTC
*
105710312 CACCACTGCTCGGGGAAG-CC
66 CACCACTGCTCGGCG-AGCCC
* *
105710332 AGATCTGTAAATTTTAGCCTGTTACCTTACTGCTTAGGGGGTTAAGGCAAGTCTTCGACCTGCTC
1 AGATCTGTAAATTTTAGCCTGTTACCCTACTGCTTAGGGGGTTAAGGCGAGTCTTCGACCTGCTC
105710397 CACCACTGCTCGGCGAGCCC
66 CACCACTGCTCGGCGAGCCC
* * *
105710417 AGCTCTGTAAATTTTAGCTTGTTAACCTACTGCTTAGGGGGTTAAGGCG-GATCTTCGACCTGCT
1 AGATCTGTAAATTTTAGCCTGTTACCCTACTGCTTAGGGGGTTAAGGCGAG-TCTTCGACCTGCT
105710481 CCACCACTGCTCGGCGAGCCC
65 CCACCACTGCTCGGCGAGCCC
* * * *
105710502 AAATCTGTAAACTTTAGCCTGTTACCCTACTGCTTAGGGGGTTAATGCGAGTCTTCGACCTGCTT
1 AGATCTGTAAATTTTAGCCTGTTACCCTACTGCTTAGGGGGTTAAGGCGAGTCTTCGACCTGCTC
* *
105710567 CACCACTGCTCGGTGAGCCT
66 CACCACTGCTCGGCGAGCCC
* *
105710587 AGATCTGTAAATTTTAGCCTGTTACCCTACTGCTTAGGGGGTTAAGACGAGTCTTCGACATGCTC
1 AGATCTGTAAATTTTAGCCTGTTACCCTACTGCTTAGGGGGTTAAGGCGAGTCTTCGACCTGCTC
*
105710652 CACCATTGCTCGGCGAGCCC
66 CACCACTGCTCGGCGAGCCC
105710672 AGATCTGTAAATTT
1 AGATCTGTAAATTT
105710686 ACAGCCCAGA
Statistics
Matches: 625, Mismatches: 60, Indels: 18
0.89 0.09 0.03
Matches are distributed among these distances:
83 1 0.00
84 10 0.02
85 606 0.97
86 8 0.01
ACGTcount: A:0.21, C:0.27, G:0.23, T:0.29
Consensus pattern (85 bp):
AGATCTGTAAATTTTAGCCTGTTACCCTACTGCTTAGGGGGTTAAGGCGAGTCTTCGACCTGCTC
CACCACTGCTCGGCGAGCCC
Found at i:105710375 original size:255 final size:253
Alignment explanation
Indices: 105709916--105710826 Score: 1227
Period size: 255 Copynumber: 3.5 Consensus size: 253
105709906 TGAGATCTGC
*
105709916 AATTTTAGCCTGTTACCCTACTGCTTAGGGGATTAA-GCTGAGTCTTCGACCTACTCCACCACTG
1 AATTTTAGCCTGTTACCCTACTGCTTAGGGG-TTAAGGC-GAGTCTTCGACCTGCTCCACCACTG
* * *
105709980 CTCGGAGAG-CTAGGATCTGTAAATTTTAGCCTATTACCCTACTGCTTAGGGGGTTAAGGCG-GA
64 CTCGGCGAGCCCA-GATCTGTAAATTTTAGCCTGTTACCCTACTGCTTAGGGGGTTAAGGCGAG-
* *
105710043 TCTTCGACCTGCTCCACCACTGCTCGGTGAGCCCAAATCTGTAAACTTTAGCCTGTTACCCTACT
127 TCTTCGACCTGCTCCACCACTGCTCGGTGAG-CCAGATCTGTAAATTTTAGCCTGTTACCCTACT
* * * *
105710108 GTTTAAGGGGTTAAGGCGAGTCTTCGACCTGCTCCAACACTACTCGGCGAGCCCAGATTTGTA
191 GCTTAGGGGGTTAAGGCGAGTCTTCGACCTGCTCCACCACTGCTCGGCGAGCCCAGATTTGTA
*
105710171 AATTTTAGCCTGTTACCCTATTGCTTAGGGGTTTAAGGCGAGTCTTCGACCTGCTCCACCACTGC
1 AATTTTAGCCTGTTACCCTACTGCTTAGGGG-TTAAGGCGAGTCTTCGACCTGCTCCACCACTGC
* * *
105710236 TCGGTGAGCCCAGATCTGTAAATTGTAGCCTGTTACCCTACTGTTTAGGGGGTTAAGGCGAGTCT
65 TCGGCGAGCCCAGATCTGTAAATTTTAGCCTGTTACCCTACTGCTTAGGGGGTTAAGGCGAGTCT
* * *
105710301 TCGACTTGCTCCACCACTGCTCGGGGAAGCCAGATCTGTAAATTTTAGCCTGTTACCTTACTGCT
130 TCGACCTGCTCCACCACTGCTCGGTG-AGCCAGATCTGTAAATTTTAGCCTGTTACCCTACTGCT
* * *
105710366 TAGGGGGTTAAGGCAAGTCTTCGACCTGCTCCACCACTGCTCGGCGAGCCCAGCTCTGTA
194 TAGGGGGTTAAGGCGAGTCTTCGACCTGCTCCACCACTGCTCGGCGAGCCCAGATTTGTA
* *
105710426 AATTTTAGCTTGTTAACCTACTGCTTAGGGGGTTAAGGCG-GATCTTCGACCTGCTCCACCACTG
1 AATTTTAGCCTGTTACCCTACTGCTTA-GGGGTTAAGGCGAG-TCTTCGACCTGCTCCACCACTG
* * *
105710490 CTCGGCGAGCCCAAATCTGTAAACTTTAGCCTGTTACCCTACTGCTTAGGGGGTTAATGCGAGTC
64 CTCGGCGAGCCCAGATCTGTAAATTTTAGCCTGTTACCCTACTGCTTAGGGGGTTAAGGCGAGTC
*
105710555 TTCGACCTGCTTCACCACTGCTCGGTGAGCCTAGATCTGTAAATTTTAGCCTGTTACCCTACTGC
129 TTCGACCTGCTCCACCACTGCTCGGTGAGCC-AGATCTGTAAATTTTAGCCTGTTACCCTACTGC
* * *
105710620 TTAGGGGGTTAAGACGAGTCTTCGACATGCTCCACCATTGCTCGGCGAGCCCAGATCTGTAAATT
193 TTAGGGGGTTAAGGCGAGTCTTCGACCTGCTCCACCACTGCTCGGCGAGCCC--A---G---A--
105710685 TACAGCCCAGATCTGTA
248 T----------T-TGTA
*
105710702 AATTTTAGCCTGTTACCCTACTACTTAGGAGGTTAAGGCGAGTCTTCGACCTGCTCCACCACTGC
1 AATTTTAGCCTGTTACCCTACTGCTTAGG-GGTTAAGGCGAGTCTTCGACCTGCTCCACCACTGC
*
105710767 TCGGCGAGCCTAGATCTGTAAATTTTAGCCTGTTACCCTACTGCTTAGGGGGTTAAGGCG
65 TCGGCGAGCCCAGATCTGTAAATTTTAGCCTGTTACCCTACTGCTTAGGGGGTTAAGGCG
105710827 CATCGCTTTC
Statistics
Matches: 580, Mismatches: 46, Indels: 39
0.87 0.07 0.06
Matches are distributed among these distances:
254 5 0.01
255 441 0.76
256 11 0.02
257 1 0.00
260 1 0.00
265 1 0.00
275 2 0.00
276 117 0.20
277 1 0.00
ACGTcount: A:0.21, C:0.27, G:0.23, T:0.29
Consensus pattern (253 bp):
AATTTTAGCCTGTTACCCTACTGCTTAGGGGTTAAGGCGAGTCTTCGACCTGCTCCACCACTGCT
CGGCGAGCCCAGATCTGTAAATTTTAGCCTGTTACCCTACTGCTTAGGGGGTTAAGGCGAGTCTT
CGACCTGCTCCACCACTGCTCGGTGAGCCAGATCTGTAAATTTTAGCCTGTTACCCTACTGCTTA
GGGGGTTAAGGCGAGTCTTCGACCTGCTCCACCACTGCTCGGCGAGCCCAGATTTGTA
Found at i:105710693 original size:21 final size:21
Alignment explanation
Indices: 105710667--105710706 Score: 80
Period size: 21 Copynumber: 1.9 Consensus size: 21
105710657 TTGCTCGGCG
105710667 AGCCCAGATCTGTAAATTTAC
1 AGCCCAGATCTGTAAATTTAC
105710688 AGCCCAGATCTGTAAATTT
1 AGCCCAGATCTGTAAATTT
105710707 TAGCCTGTTA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.33, C:0.23, G:0.15, T:0.30
Consensus pattern (21 bp):
AGCCCAGATCTGTAAATTTAC
Found at i:105710772 original size:106 final size:106
Alignment explanation
Indices: 105710582--105710791 Score: 357
Period size: 106 Copynumber: 2.0 Consensus size: 106
105710572 CTGCTCGGTG
* * *
105710582 AGCCTAGATCTGTAAATTTTAGCCTGTTACCCTACTGCTTAGGGGGTTAAGACGAGTCTTCGACA
1 AGCCCAGATCTGTAAATTTTAGCCTGTTACCCTACTACTTAGGAGGTTAAGACGAGTCTTCGACA
*
105710647 TGCTCCACCATTGCTCGGCGAGCCCAGATCTGTAAATTTAC
66 TGCTCCACCACTGCTCGGCGAGCCCAGATCTGTAAATTTAC
* *
105710688 AGCCCAGATCTGTAAATTTTAGCCTGTTACCCTACTACTTAGGAGGTTAAGGCGAGTCTTCGACC
1 AGCCCAGATCTGTAAATTTTAGCCTGTTACCCTACTACTTAGGAGGTTAAGACGAGTCTTCGACA
*
105710753 TGCTCCACCACTGCTCGGCGAGCCTAGATCTGTAAATTT
66 TGCTCCACCACTGCTCGGCGAGCCCAGATCTGTAAATTT
105710792 TAGCCTGTTA
Statistics
Matches: 97, Mismatches: 7, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
106 97 1.00
ACGTcount: A:0.23, C:0.26, G:0.21, T:0.29
Consensus pattern (106 bp):
AGCCCAGATCTGTAAATTTTAGCCTGTTACCCTACTACTTAGGAGGTTAAGACGAGTCTTCGACA
TGCTCCACCACTGCTCGGCGAGCCCAGATCTGTAAATTTAC
Found at i:105712847 original size:18 final size:19
Alignment explanation
Indices: 105712826--105712866 Score: 50
Period size: 19 Copynumber: 2.2 Consensus size: 19
105712816 TTTTGGCATC
105712826 TTTTCTT-CTTTT-TTTTT
1 TTTTCTTCCTTTTGTTTTT
*
105712843 GTTTTTTTCCTTTTGTTTTT
1 -TTTTCTTCCTTTTGTTTTT
105712863 TTTT
1 TTTT
105712867 TTGAATTTGA
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
18 6 0.30
19 9 0.45
20 5 0.25
ACGTcount: A:0.00, C:0.10, G:0.05, T:0.85
Consensus pattern (19 bp):
TTTTCTTCCTTTTGTTTTT
Found at i:105716741 original size:126 final size:126
Alignment explanation
Indices: 105716576--105716802 Score: 364
Period size: 126 Copynumber: 1.8 Consensus size: 126
105716566 GGATATTCGA
* * *
105716576 ATATTCGAATATTCAAAATAAATAAAGAAAGCGAAACCCAGTACGTTAGGGCACGATTCTTCGAA
1 ATATCCGAATATTCAAAACAAACAAAGAAAGCGAAACCCAGTACGTTAGGGCACGATTCTTCGAA
* * * *
105716641 TTCTTTAAATACCGACCATTGCCTTTATTTTGAAAATTTTTTAGAGTGAACTGGTAAGAGG
66 GTCTTTAAATACCGAACATTGCCATTATTTTAAAAATTTTTTAGAGTGAACTGGTAAGAGG
* * *
105716702 ATATCCGAATATTTAAGACAAACAAAGAAAGCGAAACCCAGTACGTTAGGGCACGATTCTTTGAA
1 ATATCCGAATATTCAAAACAAACAAAGAAAGCGAAACCCAGTACGTTAGGGCACGATTCTTCGAA
105716767 GTCTTTAAATACCGAACATTGCCATTATTTTAAAAA
66 GTCTTTAAATACCGAACATTGCCATTATTTTAAAAA
105716803 CAATTGAGAA
Statistics
Matches: 91, Mismatches: 10, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
126 91 1.00
ACGTcount: A:0.38, C:0.16, G:0.16, T:0.29
Consensus pattern (126 bp):
ATATCCGAATATTCAAAACAAACAAAGAAAGCGAAACCCAGTACGTTAGGGCACGATTCTTCGAA
GTCTTTAAATACCGAACATTGCCATTATTTTAAAAATTTTTTAGAGTGAACTGGTAAGAGG
Found at i:105717354 original size:18 final size:18
Alignment explanation
Indices: 105717331--105717372 Score: 50
Period size: 18 Copynumber: 2.3 Consensus size: 18
105717321 ATAATGCTAC
*
105717331 AATAACCA-TAAACATAGT
1 AATAACCATTAAA-ATAAT
*
105717349 AATAACGATTAAAATAAT
1 AATAACCATTAAAATAAT
105717367 AATAAC
1 AATAAC
105717373 AACAACAAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
18 17 0.81
19 4 0.19
ACGTcount: A:0.60, C:0.12, G:0.05, T:0.24
Consensus pattern (18 bp):
AATAACCATTAAAATAAT
Found at i:105717397 original size:3 final size:3
Alignment explanation
Indices: 105717391--105717563 Score: 86
Period size: 3 Copynumber: 56.7 Consensus size: 3
105717381 AATAGAAGAC
* * * * **
105717391 AAT AAT AAT AAT -AT ATT AAT AAA AAT AAT AAA AAT AAA AAT -AT GTT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
** * *
105717437 TCT AAT AAT AAT AAT AAAT CAAT AAT GAT AAT AAAT ATAT ACAA AAT
1 AAT AAT AAT AAT AAT -AAT -AAT AAT AAT AAT -AAT A-AT A-AT AAT
* * * *
105717484 AAT AGT AAC AGT AAT AA- AAT AAGT -AT AAT -AT CAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AA-T AAT AAT AAT AAT AAT AAT AAT
* * *
105717527 AAT ATAT AAT ATAT AAT AAT AAC AAT ATT AAA AAT AA
1 AAT A-AT AAT A-AT AAT AAT AAT AAT AAT AAT AAT AA
105717564 CACTCTCCCC
Statistics
Matches: 127, Mismatches: 32, Indels: 22
0.70 0.18 0.12
Matches are distributed among these distances:
2 9 0.07
3 97 0.76
4 21 0.17
ACGTcount: A:0.62, C:0.03, G:0.03, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:105717460 original size:17 final size:17
Alignment explanation
Indices: 105717390--105717472 Score: 64
Period size: 17 Copynumber: 5.0 Consensus size: 17
105717380 AAATAGAAGA
*
105717390 CAATAATAATAATATAT
1 CAATAATAATAATAAAT
* *
105717407 TAATAAAAATAATAAA-
1 CAATAATAATAATAAAT
* ***
105717423 -AATAAAAAT-ATGTTT
1 CAATAATAATAATAAAT
105717438 CTAATAATAATAATAAAT
1 C-AATAATAATAATAAAT
*
105717456 CAATAATGATAATAAAT
1 CAATAATAATAATAAAT
105717473 ATATACAAAA
Statistics
Matches: 51, Mismatches: 11, Indels: 8
0.73 0.16 0.11
Matches are distributed among these distances:
14 2 0.04
15 9 0.18
17 36 0.71
18 4 0.08
ACGTcount: A:0.61, C:0.04, G:0.02, T:0.33
Consensus pattern (17 bp):
CAATAATAATAATAAAT
Found at i:105717521 original size:17 final size:16
Alignment explanation
Indices: 105717508--105717547 Score: 62
Period size: 17 Copynumber: 2.4 Consensus size: 16
105717498 TAAAATAAGT
105717508 ATAATATCATAATAATA
1 ATAATAT-ATAATAATA
105717525 ATAATATATAATATATA
1 ATAATATATAATA-ATA
105717542 ATAATA
1 ATAATA
105717548 ACAATATTAA
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
16 6 0.27
17 16 0.73
ACGTcount: A:0.60, C:0.03, G:0.00, T:0.38
Consensus pattern (16 bp):
ATAATATATAATAATA
Found at i:105717967 original size:29 final size:30
Alignment explanation
Indices: 105717925--105717992 Score: 102
Period size: 29 Copynumber: 2.3 Consensus size: 30
105717915 TTTGTAGGCA
*
105717925 AGTGGGGTGATGGAGATAGT-GGATGGTTT
1 AGTGGGGTGATGGAGATAGTGGGATGATTT
*
105717954 AGTGGGGTGATGGAGTTAGTGGGATGATTT
1 AGTGGGGTGATGGAGATAGTGGGATGATTT
*
105717984 AGTAGGGTG
1 AGTGGGGTG
105717993 TGGGGGTGAT
Statistics
Matches: 35, Mismatches: 3, Indels: 1
0.90 0.08 0.03
Matches are distributed among these distances:
29 19 0.54
30 16 0.46
ACGTcount: A:0.21, C:0.00, G:0.49, T:0.31
Consensus pattern (30 bp):
AGTGGGGTGATGGAGATAGTGGGATGATTT
Found at i:105717974 original size:17 final size:17
Alignment explanation
Indices: 105717925--105717981 Score: 52
Period size: 17 Copynumber: 3.6 Consensus size: 17
105717915 TTTGTAGGCA
*
105717925 AGTGGGGTGATGGAGAT
1 AGTGGGGTGATGGAGTT
*
105717942 AGT---G-GATGG-TTT
1 AGTGGGGTGATGGAGTT
105717954 AGTGGGGTGATGGAGTT
1 AGTGGGGTGATGGAGTT
*
105717971 AGTGGGATGAT
1 AGTGGGGTGAT
105717982 TTAGTAGGGT
Statistics
Matches: 31, Mismatches: 4, Indels: 10
0.69 0.09 0.22
Matches are distributed among these distances:
12 4 0.13
13 5 0.16
14 1 0.03
15 1 0.03
16 5 0.16
17 15 0.48
ACGTcount: A:0.21, C:0.00, G:0.49, T:0.30
Consensus pattern (17 bp):
AGTGGGGTGATGGAGTT
Found at i:105721108 original size:31 final size:30
Alignment explanation
Indices: 105721073--105721144 Score: 81
Period size: 30 Copynumber: 2.4 Consensus size: 30
105721063 TTAGTAAAGG
* *
105721073 TAAAATTATACTTTAACCCTCTTAAAAATAA
1 TAAAAATATAATTTAACCCT-TTAAAAATAA
** *
105721104 TAAAAATATAATTTATTCCTTTAAAAATTA
1 TAAAAATATAATTTAACCCTTTAAAAATAA
*
105721134 TAAAGATATAA
1 TAAAAATATAA
105721145 ACAATTTAAT
Statistics
Matches: 35, Mismatches: 6, Indels: 1
0.83 0.14 0.02
Matches are distributed among these distances:
30 19 0.54
31 16 0.46
ACGTcount: A:0.51, C:0.10, G:0.01, T:0.38
Consensus pattern (30 bp):
TAAAAATATAATTTAACCCTTTAAAAATAA
Found at i:105730584 original size:21 final size:22
Alignment explanation
Indices: 105730560--105730600 Score: 57
Period size: 21 Copynumber: 1.9 Consensus size: 22
105730550 TGTCTCATAG
105730560 CCACACAAGCGTGT-ACCCTGT
1 CCACACAAGCGTGTGACCCTGT
**
105730581 CCACACGGGCGTGTGACCCT
1 CCACACAAGCGTGTGACCCT
105730601 TGCACTTTGA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 12 0.71
22 5 0.29
ACGTcount: A:0.20, C:0.39, G:0.24, T:0.17
Consensus pattern (22 bp):
CCACACAAGCGTGTGACCCTGT
Found at i:105730666 original size:37 final size:36
Alignment explanation
Indices: 105730616--105730686 Score: 124
Period size: 37 Copynumber: 1.9 Consensus size: 36
105730606 TTTGAAAAGA
*
105730616 AAATTTTATGTTTCTTAAAAATTCGTAGAGAACTCG
1 AAATTTTATGTTTCTTAAAAATTCATAGAGAACTCG
105730652 AAATTTTCATGTTTCTTAAAAATTCATAGAGAACT
1 AAATTTT-ATGTTTCTTAAAAATTCATAGAGAACT
105730687 AGATTTAGTC
Statistics
Matches: 33, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
36 7 0.21
37 26 0.79
ACGTcount: A:0.38, C:0.11, G:0.11, T:0.39
Consensus pattern (36 bp):
AAATTTTATGTTTCTTAAAAATTCATAGAGAACTCG
Found at i:105732877 original size:26 final size:26
Alignment explanation
Indices: 105732848--105732903 Score: 103
Period size: 26 Copynumber: 2.2 Consensus size: 26
105732838 TGATACAAAT
105732848 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
105732874 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
105732900 TGAT
1 TGAT
105732904 GGGCATTTCA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.30, C:0.07, G:0.25, T:0.38
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:105735950 original size:34 final size:35
Alignment explanation
Indices: 105735905--105735982 Score: 106
Period size: 35 Copynumber: 2.3 Consensus size: 35
105735895 CAAACATCAG
105735905 ACAGATACAAATTAAGG-CTAAGCCCATTAT-AGAT
1 ACAGATACAAATTAAGGCCTAAGCCCA-TATCAGAT
* **
105735939 ACAGATGCAAATTCGGGCCTAAGCCCATATCAGAT
1 ACAGATACAAATTAAGGCCTAAGCCCATATCAGAT
105735974 ACAGATACA
1 ACAGATACA
105735983 GAAGTACAAT
Statistics
Matches: 38, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
34 17 0.45
35 21 0.55
ACGTcount: A:0.41, C:0.22, G:0.17, T:0.21
Consensus pattern (35 bp):
ACAGATACAAATTAAGGCCTAAGCCCATATCAGAT
Found at i:105741344 original size:18 final size:17
Alignment explanation
Indices: 105741323--105741366 Score: 52
Period size: 18 Copynumber: 2.5 Consensus size: 17
105741313 AAATAAGAAC
*
105741323 AAATGAAAAAAAGAGTGA
1 AAATGAAAAAAAG-GAGA
*
105741341 AAATGAAATAAAGGAGA
1 AAATGAAAAAAAGGAGA
*
105741358 ATATGAAAA
1 AAATGAAAA
105741367 TTAGAAAAGT
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
17 10 0.45
18 12 0.55
ACGTcount: A:0.66, C:0.00, G:0.20, T:0.14
Consensus pattern (17 bp):
AAATGAAAAAAAGGAGA
Found at i:105742710 original size:30 final size:30
Alignment explanation
Indices: 105742674--105742743 Score: 81
Period size: 31 Copynumber: 2.3 Consensus size: 30
105742664 ATTATACATG
105742674 AACTTTAATT-TGATGT-AATTATACATATGA
1 AACTTTAATTGTGAT-TAAATT-TACATATGA
* *
105742704 AACTTTAATTGTGGTTCAAATTTATATATGA
1 AACTTTAATTGTGATT-AAATTTACATATGA
105742735 AACTTTAAT
1 AACTTTAAT
105742744 CTTGGTTCAA
Statistics
Matches: 35, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
30 11 0.31
31 20 0.57
32 4 0.11
ACGTcount: A:0.39, C:0.07, G:0.10, T:0.44
Consensus pattern (30 bp):
AACTTTAATTGTGATTAAATTTACATATGA
Found at i:105744831 original size:16 final size:16
Alignment explanation
Indices: 105744812--105744863 Score: 54
Period size: 15 Copynumber: 3.4 Consensus size: 16
105744802 TTTCAACAAA
105744812 ATAAAAATTTATTACC
1 ATAAAAATTTATTACC
* * *
105744828 ATAAAAATTAAAT-GC
1 ATAAAAATTTATTACC
*
105744843 ATACAAATTTATTACC
1 ATAAAAATTTATTACC
105744859 A-AAAA
1 ATAAAA
105744864 TAAAACGTAT
Statistics
Matches: 27, Mismatches: 8, Indels: 3
0.71 0.21 0.08
Matches are distributed among these distances:
15 14 0.52
16 13 0.48
ACGTcount: A:0.56, C:0.12, G:0.02, T:0.31
Consensus pattern (16 bp):
ATAAAAATTTATTACC
Found at i:105744874 original size:19 final size:19
Alignment explanation
Indices: 105744852--105744902 Score: 66
Period size: 19 Copynumber: 2.7 Consensus size: 19
105744842 CATACAAATT
*
105744852 TATTACCAAAAATAAAACG
1 TATTACCAAAAAGAAAACG
* *
105744871 TATTTCCAAAAAGAAAACT
1 TATTACCAAAAAGAAAACG
*
105744890 TATTACCATAAAG
1 TATTACCAAAAAG
105744903 TTTTTTACGC
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
19 27 1.00
ACGTcount: A:0.53, C:0.16, G:0.06, T:0.25
Consensus pattern (19 bp):
TATTACCAAAAAGAAAACG
Found at i:105751706 original size:32 final size:32
Alignment explanation
Indices: 105751669--105751733 Score: 121
Period size: 32 Copynumber: 2.0 Consensus size: 32
105751659 AATGCTTACC
*
105751669 ATGCCCATCATCCATTAACTATTAAAATGCTA
1 ATGCCCATCATCCATTAAATATTAAAATGCTA
105751701 ATGCCCATCATCCATTAAATATTAAAATGCTA
1 ATGCCCATCATCCATTAAATATTAAAATGCTA
105751733 A
1 A
105751734 AATGCATACA
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 32 1.00
ACGTcount: A:0.40, C:0.23, G:0.06, T:0.31
Consensus pattern (32 bp):
ATGCCCATCATCCATTAAATATTAAAATGCTA
Found at i:105756530 original size:12 final size:12
Alignment explanation
Indices: 105756513--105756555 Score: 77
Period size: 12 Copynumber: 3.6 Consensus size: 12
105756503 AGTACTACCT
105756513 CGGCCTCGACCA
1 CGGCCTCGACCA
105756525 CGGCCTCGACCA
1 CGGCCTCGACCA
*
105756537 CGGCCTCGAACA
1 CGGCCTCGACCA
105756549 CGGCCTC
1 CGGCCTC
105756556 TTCCCCGAGT
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
12 30 1.00
ACGTcount: A:0.16, C:0.49, G:0.26, T:0.09
Consensus pattern (12 bp):
CGGCCTCGACCA
Found at i:105759733 original size:32 final size:32
Alignment explanation
Indices: 105759691--105759755 Score: 112
Period size: 32 Copynumber: 2.0 Consensus size: 32
105759681 AATGCTTACC
*
105759691 ATGCCCATCATCCATTAACTATTAAAATGCTA
1 ATGCCCATCATCCATTAAATATTAAAATGCTA
*
105759723 ATGCCTATCATCCATTAAATATTAAAATGCTA
1 ATGCCCATCATCCATTAAATATTAAAATGCTA
105759755 A
1 A
105759756 AATGCATACA
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
32 31 1.00
ACGTcount: A:0.40, C:0.22, G:0.06, T:0.32
Consensus pattern (32 bp):
ATGCCCATCATCCATTAAATATTAAAATGCTA
Found at i:105760823 original size:27 final size:27
Alignment explanation
Indices: 105760784--105760844 Score: 65
Period size: 27 Copynumber: 2.3 Consensus size: 27
105760774 AAACGAAAAC
*
105760784 AAATAAAATATGAAATTCAAGA-ATAAA-
1 AAATAAAATATG--ATTCAAAACATAAAT
105760811 AAAT-AAATAATGATTCAAAACATAAAT
1 AAATAAAAT-ATGATTCAAAACATAAAT
105760838 AAATAAA
1 AAATAAA
105760845 GAAAATGCAA
Statistics
Matches: 29, Mismatches: 1, Indels: 7
0.78 0.03 0.19
Matches are distributed among these distances:
25 7 0.24
26 9 0.31
27 11 0.38
28 2 0.07
ACGTcount: A:0.67, C:0.05, G:0.05, T:0.23
Consensus pattern (27 bp):
AAATAAAATATGATTCAAAACATAAAT
Found at i:105763269 original size:19 final size:19
Alignment explanation
Indices: 105763231--105763270 Score: 55
Period size: 19 Copynumber: 2.1 Consensus size: 19
105763221 GAGACATTTT
*
105763231 ATTCTTAAAAACTTTGAAA
1 ATTCTTAAAAAATTTGAAA
105763250 ATTCTTAAAAAAATTT-AAA
1 ATTCTT-AAAAAATTTGAAA
105763269 AT
1 AT
105763271 ATAGAAAAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
19 11 0.58
20 8 0.42
ACGTcount: A:0.53, C:0.07, G:0.03, T:0.38
Consensus pattern (19 bp):
ATTCTTAAAAAATTTGAAA
Found at i:105765701 original size:50 final size:50
Alignment explanation
Indices: 105765626--105765801 Score: 271
Period size: 50 Copynumber: 3.5 Consensus size: 50
105765616 TATGGCAACC
* *
105765626 AGTGATAAGTGATAGCTTTGGCTACACTTATCTGATCAAGGATAAGTGAA
1 AGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAGTGAA
*
105765676 AGTGATAAGTGATAGCTTCGGCTACACTTATCTAATCAAGGACAAGTGAA
1 AGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAGTGAA
* *
105765726 AGTGATAAGTGATAGCTTCGGCTAAACTTATCTGATCAAGGACAAATGACA
1 AGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAGTGA-A
* * *
105765777 AGTAAAAAGTGGTAGCTTCGGCTAC
1 AGTGATAAGTGATAGCTTCGGCTAC
105765802 CTGATCAGTG
Statistics
Matches: 115, Mismatches: 10, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
50 93 0.81
51 22 0.19
ACGTcount: A:0.35, C:0.15, G:0.23, T:0.27
Consensus pattern (50 bp):
AGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAGTGAA
Found at i:105765819 original size:31 final size:31
Alignment explanation
Indices: 105765781--105765956 Score: 280
Period size: 31 Copynumber: 5.7 Consensus size: 31
105765771 ATGACAAGTA
105765781 AAAAGTGGTAGCTTCGGCTACCTGATCAGTG
1 AAAAGTGGTAGCTTCGGCTACCTGATCAGTG
*
105765812 AAAAGTGGTAGCTTCGGCTACCTGATCAGTA
1 AAAAGTGGTAGCTTCGGCTACCTGATCAGTG
* *
105765843 AAAAGTGGTAGCTTCGACTACCTGATCGGTG
1 AAAAGTGGTAGCTTCGGCTACCTGATCAGTG
105765874 AAAAGTGGTAGCTTCGGCTACCTGATCAGTG
1 AAAAGTGGTAGCTTCGGCTACCTGATCAGTG
* * *
105765905 AAAAATGGCAGCTCCGGCTACCTGATCAGTG
1 AAAAGTGGTAGCTTCGGCTACCTGATCAGTG
* *
105765936 AATAGTGATAGCTTCGGCTAC
1 AAAAGTGGTAGCTTCGGCTAC
105765957 AAGTGACAAG
Statistics
Matches: 131, Mismatches: 14, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
31 131 1.00
ACGTcount: A:0.27, C:0.20, G:0.27, T:0.25
Consensus pattern (31 bp):
AAAAGTGGTAGCTTCGGCTACCTGATCAGTG
Found at i:105766121 original size:48 final size:49
Alignment explanation
Indices: 105765978--105766244 Score: 249
Period size: 48 Copynumber: 5.7 Consensus size: 49
105765968 GATTTTCATA
* * * * * * *
105765978 TAAGACCATATCTGGGATATGGCATCGGTA--TGATATATG-CTACCGTA
1 TAAGACCATAGCTGGGCTATGGCATCGATATGTGATATGTGAATA-CATG
* * * * * *
105766025 TAAGACCATATCTGGGATATGGCATC-A-GTGAGATATGTG-ATTCGTG
1 TAAGACCATAGCTGGGCTATGGCATCGATATGTGATATGTGAATACATG
* *
105766071 TAAGATCATAGCTGGGCTATCGCATCGATATGTGATATGT-AATACATG
1 TAAGACCATAGCTGGGCTATGGCATCGATATGTGATATGTGAATACATG
* *
105766119 TAAGACCATAGCTGGGTTATGGCATCGATATGTGATATGTGATTACATG
1 TAAGACCATAGCTGGGCTATGGCATCGATATGTGATATGTGAATACATG
*
105766168 TAAGACCATAGCTGGGCTATGGCATC-------GATATGTGAATACGTG
1 TAAGACCATAGCTGGGCTATGGCATCGATATGTGATATGTGAATACATG
105766210 TAAGACCATAGCTGGGCTATGGCATC-ATTATGTGA
1 TAAGACCATAGCTGGGCTATGGCATCGA-TATGTGA
105766245 AGATGTGTAA
Statistics
Matches: 185, Mismatches: 22, Indels: 24
0.80 0.10 0.10
Matches are distributed among these distances:
42 40 0.22
46 25 0.14
47 35 0.19
48 51 0.28
49 34 0.18
ACGTcount: A:0.29, C:0.15, G:0.26, T:0.30
Consensus pattern (49 bp):
TAAGACCATAGCTGGGCTATGGCATCGATATGTGATATGTGAATACATG
Found at i:105766212 original size:42 final size:42
Alignment explanation
Indices: 105766152--105766262 Score: 170
Period size: 42 Copynumber: 2.6 Consensus size: 42
105766142 ATCGATATGT
* *
105766152 GATATGTGATTACATGTAAGACCATAGCTGGGCTATGGCATC
1 GATATGTGAATACGTGTAAGACCATAGCTGGGCTATGGCATC
105766194 GATATGTGAATACGTGTAAGACCATAGCTGGGCTATGGCATC
1 GATATGTGAATACGTGTAAGACCATAGCTGGGCTATGGCATC
* *
105766236 -ATTATGTGAAGATGTGTAAGACCATAG
1 GA-TATGTGAATACGTGTAAGACCATAG
105766263 TTGAACTACG
Statistics
Matches: 64, Mismatches: 4, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
41 1 0.02
42 63 0.98
ACGTcount: A:0.31, C:0.14, G:0.27, T:0.28
Consensus pattern (42 bp):
GATATGTGAATACGTGTAAGACCATAGCTGGGCTATGGCATC
Found at i:105770036 original size:17 final size:18
Alignment explanation
Indices: 105770016--105770049 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
105770006 AAGTGAATTG
105770016 AAATTGC-GAAATTAAAT
1 AAATTGCAGAAATTAAAT
105770033 AAATTGCAGAAATTAAA
1 AAATTGCAGAAATTAAA
105770050 ATGAGGAAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 7 0.44
18 9 0.56
ACGTcount: A:0.56, C:0.06, G:0.12, T:0.26
Consensus pattern (18 bp):
AAATTGCAGAAATTAAAT
Found at i:105770791 original size:20 final size:20
Alignment explanation
Indices: 105770753--105770793 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
105770743 TAAATTGTAA
* **
105770753 AAAGATAAATACATTTAATT
1 AAAGATAAATAAAGATAATT
105770773 AAAGATAAATAAAGATAATT
1 AAAGATAAATAAAGATAATT
105770793 A
1 A
105770794 GAATAAAATC
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.61, C:0.02, G:0.07, T:0.29
Consensus pattern (20 bp):
AAAGATAAATAAAGATAATT
Done.