Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A06
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 115140250
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2234201 characters in sequence are not A, C, G, or T
File 316 of 345
Found at i:106591633 original size:28 final size:28
Alignment explanation
Indices: 106591602--106591664 Score: 90
Period size: 28 Copynumber: 2.2 Consensus size: 28
106591592 TCCCATATTA
106591602 ATGGGGTATAAGAAAAGTCTCATAACTT
1 ATGGGGTATAAGAAAAGTCTCATAACTT
* * * *
106591630 ATGGGGTATAGGAAGAGTTTTATAACTT
1 ATGGGGTATAAGAAAAGTCTCATAACTT
106591658 ATGGGGT
1 ATGGGGT
106591665 TGATAATGAC
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
28 31 1.00
ACGTcount: A:0.33, C:0.06, G:0.29, T:0.32
Consensus pattern (28 bp):
ATGGGGTATAAGAAAAGTCTCATAACTT
Found at i:106597020 original size:28 final size:28
Alignment explanation
Indices: 106596989--106597051 Score: 99
Period size: 28 Copynumber: 2.2 Consensus size: 28
106596979 TCCCATATTA
106596989 ATGGGGTATAGGAAAAGTCTCATAACTT
1 ATGGGGTATAGGAAAAGTCTCATAACTT
* * *
106597017 ATGGGGTATAGGAAGAGTTTTATAACTT
1 ATGGGGTATAGGAAAAGTCTCATAACTT
106597045 ATGGGGT
1 ATGGGGT
106597052 TGATAATGAC
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
28 32 1.00
ACGTcount: A:0.32, C:0.06, G:0.30, T:0.32
Consensus pattern (28 bp):
ATGGGGTATAGGAAAAGTCTCATAACTT
Found at i:106597321 original size:25 final size:24
Alignment explanation
Indices: 106597282--106597338 Score: 71
Period size: 23 Copynumber: 2.3 Consensus size: 24
106597272 GAATTCTTAT
* *
106597282 AAATTTTAAACTTTAGATTTTTTTTA
1 AAATTTTTAACTTT--ATATTTTTTA
106597308 AAATTTTTAA-TTTATATTTTTTA
1 AAATTTTTAACTTTATATTTTTTA
106597331 AAATTTTT
1 AAATTTTT
106597339 TATCAAATTA
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
23 17 0.59
25 3 0.10
26 9 0.31
ACGTcount: A:0.35, C:0.02, G:0.02, T:0.61
Consensus pattern (24 bp):
AAATTTTTAACTTTATATTTTTTA
Found at i:106597653 original size:3 final size:3
Alignment explanation
Indices: 106597640--106597711 Score: 135
Period size: 3 Copynumber: 23.7 Consensus size: 3
106597630 CTGTTTTTTC
106597640 CTT CGTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT
1 CTT C-TT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT
106597686 CTT CTT CTT CTT CTT CTT CTT CTT CT
1 CTT CTT CTT CTT CTT CTT CTT CTT CT
106597712 GCTACTGCTG
Statistics
Matches: 68, Mismatches: 0, Indels: 2
0.97 0.00 0.03
Matches are distributed among these distances:
3 65 0.96
4 3 0.04
ACGTcount: A:0.00, C:0.33, G:0.01, T:0.65
Consensus pattern (3 bp):
CTT
Found at i:106602001 original size:32 final size:32
Alignment explanation
Indices: 106601965--106602030 Score: 123
Period size: 32 Copynumber: 2.1 Consensus size: 32
106601955 TTACGAGATA
106601965 AAATAAAATAATATTGAGTGAATTTTTATGAG
1 AAATAAAATAATATTGAGTGAATTTTTATGAG
*
106601997 AAATAAAATAATGTTGAGTGAATTTTTATGAG
1 AAATAAAATAATATTGAGTGAATTTTTATGAG
106602029 AA
1 AA
106602031 TAATACACTT
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 33 1.00
ACGTcount: A:0.47, C:0.00, G:0.17, T:0.36
Consensus pattern (32 bp):
AAATAAAATAATATTGAGTGAATTTTTATGAG
Found at i:106603757 original size:5 final size:5
Alignment explanation
Indices: 106603749--106603773 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
106603739 GAGTTATCCT
106603749 TTAGA TTAGA TTAGA TTAGA TTAGA
1 TTAGA TTAGA TTAGA TTAGA TTAGA
106603774 GTGAAGTTAG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.40, C:0.00, G:0.20, T:0.40
Consensus pattern (5 bp):
TTAGA
Found at i:106618515 original size:43 final size:43
Alignment explanation
Indices: 106618461--106618622 Score: 166
Period size: 43 Copynumber: 3.8 Consensus size: 43
106618451 TGCCATATCT
* * *
106618461 CAGATATGGTCTTACATGTTATCACATATCGATGCCACTGTCC
1 CAGACATGGTCTTACATGTAATCACATATCGATGCCAATGTCC
* * * * * * *
106618504 CAGATAAGGTCTTACACGAAATCGA-TTAACGATGCCAATATCC
1 CAGACATGGTCTTACATGTAATC-ACATATCGATGCCAATGTCC
* *
106618547 CAGACATGGTCTTACATGTAATCTCA-ATACAATGCCAATGTCC
1 CAGACATGGTCTTACATGTAATCACATAT-CGATGCCAATGTCC
* *
106618590 CATACATGGTCTTACATGTAATCACATCTCGAT
1 CAGACATGGTCTTACATGTAATCACATATCGAT
106618623 AACATAATGT
Statistics
Matches: 94, Mismatches: 21, Indels: 8
0.76 0.17 0.07
Matches are distributed among these distances:
42 1 0.01
43 91 0.97
44 2 0.02
ACGTcount: A:0.31, C:0.25, G:0.15, T:0.29
Consensus pattern (43 bp):
CAGACATGGTCTTACATGTAATCACATATCGATGCCAATGTCC
Found at i:106622892 original size:43 final size:44
Alignment explanation
Indices: 106622831--106622988 Score: 189
Period size: 43 Copynumber: 3.7 Consensus size: 44
106622821 CAACGCTATA
* * * *
106622831 TCCCAGATATGGTCTTACATGTTATCACATAT-CGATGCCACTG
1 TCCCAGACATGGTCTTACACGTAATCACATATACGATGCCAATG
*
106622874 TCCCAGACAGGGTCTTACACG-AATCA-ATATACGATGCCAATG
1 TCCCAGACATGGTCTTACACGTAATCACATATACGATGCCAATG
* * *
106622916 TCCCAGACATAGTCTTACACATAATCACA-ATACAATGCCAATG
1 TCCCAGACATGGTCTTACACGTAATCACATATACGATGCCAATG
* * *
106622959 TCCCAGACATGGTTTTACATGCAATCACAT
1 TCCCAGACATGGTCTTACACGTAATCACAT
106622989 CTCGATAACC
Statistics
Matches: 97, Mismatches: 14, Indels: 7
0.82 0.12 0.06
Matches are distributed among these distances:
41 4 0.04
42 32 0.33
43 60 0.62
44 1 0.01
ACGTcount: A:0.32, C:0.27, G:0.15, T:0.27
Consensus pattern (44 bp):
TCCCAGACATGGTCTTACACGTAATCACATATACGATGCCAATG
Found at i:106638060 original size:28 final size:27
Alignment explanation
Indices: 106638006--106638066 Score: 88
Period size: 28 Copynumber: 2.2 Consensus size: 27
106637996 AAGTTTTTAA
106638006 TTTTTATTTGTTTCTTTAAATATTTCT
1 TTTTTATTTGTTTCTTTAAATATTTCT
*
106638033 TTATTTATTTTTATTCTTTAAATA-TTCT
1 TT-TTTATTTGT-TTCTTTAAATATTTCT
106638061 TTTTTA
1 TTTTTA
106638067 ATTAAATTCT
Statistics
Matches: 31, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
27 6 0.19
28 14 0.45
29 11 0.35
ACGTcount: A:0.21, C:0.07, G:0.02, T:0.70
Consensus pattern (27 bp):
TTTTTATTTGTTTCTTTAAATATTTCT
Found at i:106638137 original size:31 final size:33
Alignment explanation
Indices: 106638078--106638147 Score: 85
Period size: 31 Copynumber: 2.2 Consensus size: 33
106638068 TTAAATTCTA
106638078 ATATTTTAAATTTAAATTTATTCCTTTATATTT
1 ATATTTTAAATTTAAATTTATTCCTTTATATTT
* *
106638111 ATATTTT-AA-TTAAATTCTATT-GTTTATTTTT
1 ATATTTTAAATTTAAATT-TATTCCTTTATATTT
106638142 A-ATTTT
1 ATATTTT
106638148 TTTATTTCTT
Statistics
Matches: 34, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
30 5 0.15
31 16 0.47
32 6 0.18
33 7 0.21
ACGTcount: A:0.31, C:0.04, G:0.01, T:0.63
Consensus pattern (33 bp):
ATATTTTAAATTTAAATTTATTCCTTTATATTT
Found at i:106638219 original size:20 final size:20
Alignment explanation
Indices: 106638194--106638249 Score: 62
Period size: 20 Copynumber: 2.8 Consensus size: 20
106638184 CTTTAATTAT
106638194 TTTTAATTAAATTTCTATTC-
1 TTTTAATTAAATTT-TATTCA
106638214 TTTTAAACTTAAA-TTTATTCA
1 TTTT-AA-TTAAATTTTATTCA
*
106638235 TTTAAATTAAATTTT
1 TTTTAATTAAATTTT
106638250 TAATTAAATT
Statistics
Matches: 31, Mismatches: 1, Indels: 8
0.77 0.03 0.20
Matches are distributed among these distances:
19 5 0.16
20 14 0.45
21 7 0.23
22 5 0.16
ACGTcount: A:0.36, C:0.07, G:0.00, T:0.57
Consensus pattern (20 bp):
TTTTAATTAAATTTTATTCA
Found at i:106638229 original size:133 final size:137
Alignment explanation
Indices: 106637999--106638260 Score: 340
Period size: 133 Copynumber: 1.9 Consensus size: 137
106637989 TCCAATCAAG
* * * *
106637999 TTTTTAATTTTTATTTGTTTCTTTAAATATTTCTTTATTTATTTTTATTCTTTAAATATTCTTTT
1 TTTTTAATTTTTATTTATTTCTTTAAATATTTCTGTATTTATTTATATTCTTT-AATATTCATTT
* * * *
106638064 TTAATTAAATTCTAATATTTTAAATTTAAATTTATTCCTTTATATT-TATATTTTAATTAAATTC
65 TTAATTAAATTCTAATATTTTAAACTTAAATTTATTCATTTAAATTAAAT-TTTTAATTAAATTC
106638128 TATTGTTTA
129 TATTGTTTA
*
106638137 TTTTTAA-TTTT-TTTATTTCTTTAAATATTTCTGTACTTTGTTTAT-TTCTTT-A-ATT-ATTT
1 TTTTTAATTTTTATTTATTTCTTTAAATATTTCTGTA-TTTATTTATATTCTTTAATATTCATTT
* *
106638196 TTAATTAAATTTCTATTCTTTTAAACTTAAATTTATTCATTTAAATTAAATTTTTAATTAAATTC
65 TTAATTAAA-TTCTAATATTTTAAACTTAAATTTATTCATTTAAATTAAATTTTTAATTAAATTC
106638261 GATTACCGAC
Statistics
Matches: 110, Mismatches: 11, Indels: 11
0.83 0.08 0.08
Matches are distributed among these distances:
132 12 0.11
133 49 0.45
134 3 0.03
136 28 0.25
137 11 0.10
138 7 0.06
ACGTcount: A:0.29, C:0.06, G:0.02, T:0.63
Consensus pattern (137 bp):
TTTTTAATTTTTATTTATTTCTTTAAATATTTCTGTATTTATTTATATTCTTTAATATTCATTTT
TAATTAAATTCTAATATTTTAAACTTAAATTTATTCATTTAAATTAAATTTTTAATTAAATTCTA
TTGTTTA
Found at i:106643510 original size:61 final size:61
Alignment explanation
Indices: 106643434--106643560 Score: 157
Period size: 61 Copynumber: 2.1 Consensus size: 61
106643424 ATGGGAAATC
* * * * * * *
106643434 AACACGGCCTGGACTTCCTTACACGGGTAGACTACATGCTTGTGTCCT-TTTAGCAGACTCT
1 AACACGACCTGGACTTCCTCACACAGGTAGACCACACGCTCGTG-CCTATTTAACAGACTCT
* *
106643495 AACACGACCTGGACTTCCTCACACAGGTATACCACACGCTCGTGCCTATTTAACAGACTTT
1 AACACGACCTGGACTTCCTCACACAGGTAGACCACACGCTCGTGCCTATTTAACAGACTCT
106643556 AACAC
1 AACAC
106643561 TGTTTGAAGC
Statistics
Matches: 56, Mismatches: 9, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
60 3 0.05
61 53 0.95
ACGTcount: A:0.26, C:0.31, G:0.17, T:0.26
Consensus pattern (61 bp):
AACACGACCTGGACTTCCTCACACAGGTAGACCACACGCTCGTGCCTATTTAACAGACTCT
Found at i:106647707 original size:43 final size:41
Alignment explanation
Indices: 106647659--106647808 Score: 149
Period size: 43 Copynumber: 3.5 Consensus size: 41
106647649 GTTACCAAGA
*
106647659 TGTGATTACATGTAAGACCATGTTTGGGACATTGGCATTGTAT
1 TGTGATTACATGTAAGACCATGTTTGGGACATTGGCATCG--T
* *
106647702 TGTGATTACGTGTAAGACCATGTTTGTGACATTGGCATCGT
1 TGTGATTACATGTAAGACCATGTTTGGGACATTGGCATCGT
* * * *
106647743 TGATCGATTACATGTAAGACC-TTTTCTAGGACAGTGGCAACGAT
1 TG-T-GATTACATGTAAGACCATGTT-TGGGACATTGGCATCG-T
* *
106647787 ATGTGATGACATGTAAAACCAT
1 -TGTGATTACATGTAAGACCAT
106647809 ATCTGGGATA
Statistics
Matches: 90, Mismatches: 11, Indels: 11
0.80 0.10 0.10
Matches are distributed among these distances:
41 3 0.03
42 4 0.04
43 78 0.87
44 3 0.03
45 2 0.02
ACGTcount: A:0.28, C:0.15, G:0.24, T:0.33
Consensus pattern (41 bp):
TGTGATTACATGTAAGACCATGTTTGGGACATTGGCATCGT
Found at i:106649268 original size:46 final size:46
Alignment explanation
Indices: 106649218--106649393 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
106649208 TGGTTGAGCA
106649218 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
106649264 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
106649309 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
106649357 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
106649394 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 63 0.57
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:106649374 original size:93 final size:93
Alignment explanation
Indices: 106649215--106649386 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
106649205 GGATGGTTGA
* *
106649215 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
106649280 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
106649308 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
106649373 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
106649387 CTTATGGGCG
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:106656845 original size:46 final size:45
Alignment explanation
Indices: 106656790--106656966 Score: 191
Period size: 46 Copynumber: 3.8 Consensus size: 45
106656780 ATGGTTGAGC
*
106656790 ATCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAAT
1 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGT-AAT
* *
106656836 ATCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACT
1 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTAA-T
*
106656879 AGGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA-
1 ----ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTAAT
* * *
106656927 ACGCCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 A--TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
106656967 GCGGGTTACA
Statistics
Matches: 112, Mismatches: 9, Indels: 20
0.79 0.06 0.14
Matches are distributed among these distances:
42 2 0.02
43 6 0.05
44 1 0.01
45 2 0.02
46 63 0.56
47 30 0.27
48 2 0.02
50 6 0.05
ACGTcount: A:0.23, C:0.20, G:0.28, T:0.29
Consensus pattern (45 bp):
ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTAAT
Found at i:106656947 original size:93 final size:93
Alignment explanation
Indices: 106656788--106656959 Score: 281
Period size: 93 Copynumber: 1.8 Consensus size: 93
106656778 GGATGGTTGA
** * *
106656788 GCATCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAATATCCGAACTCGTTGAGT
1 GCATCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACACCCGAACTCGTTGAGT
106656853 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* * *
106656881 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAGCTCGTTGAGT
1 GCATCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACACCCGAACTCGTTGAGT
106656946 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
106656960 CTTATGGGCG
Statistics
Matches: 72, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.23, C:0.21, G:0.28, T:0.28
Consensus pattern (93 bp):
GCATCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACACCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:106661796 original size:48 final size:48
Alignment explanation
Indices: 106661721--106661993 Score: 202
Period size: 48 Copynumber: 5.7 Consensus size: 48
106661711 TGACATGTGT
** *
106661721 GCTAGTGTAAGACCATGTCTGGGACATGTTATCGGTATTGAGATGAGA
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGAGATGAGA
* * * *
106661769 GCTAGTGTAAGACCATGTCTGGAACATGGCATCGGCCTTGAGTTGTGA
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGAGATGAGA
* * * * * *
106661817 GCCAGTGTAAGGCCATGCCTGGGACATGGCATCAGC-TATGGGATGTG-
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCAT-TGAGATGAGA
* * * * * *
106661864 TC-AGTGTAAGACCATGCCTGGGTCATGGCATCGGCCTCG-G-TTACGGTA
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGAGATGA--G-A
* * **
106661912 GTTAGTGTAAGACCATGTCTGGGATATGGCATCAAC-TT--GATGTATGA
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGAGATG-A-GA
* * *
106661959 GCCAGTGTAAGACCATGTTTGGGGCATGGCATCGG
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGG
106661994 TATCCTACCT
Statistics
Matches: 178, Mismatches: 38, Indels: 19
0.76 0.16 0.08
Matches are distributed among these distances:
44 1 0.01
45 1 0.01
46 32 0.18
47 33 0.19
48 82 0.46
49 29 0.16
ACGTcount: A:0.23, C:0.18, G:0.32, T:0.26
Consensus pattern (48 bp):
GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGAGATGAGA
Found at i:106661895 original size:94 final size:94
Alignment explanation
Indices: 106661724--106661993 Score: 244
Period size: 96 Copynumber: 2.8 Consensus size: 94
106661714 CATGTGTGCT
* ** * *
106661724 AGTGTAAGACCATGTCTGGGACATGTTATCGGTA-TTGA-GATGAGAGCTAGTGTAAGACCATGT
1 AGTGTAAGACCATGCCTGGGACATGGCATC--AACTTGAGGAT--GAGCCAGTGTAAGACCATGT
* *
106661787 CTGGAACATGGCATCGGCCTTGAGTT--GTGAGCC
62 CTGGGACATGGCATCGGCCTCG-GTTAGGT-AGCC
* * * * *
106661820 AGTGTAAGGCCATGCCTGGGACATGGCATCAGCTATG-GGATGTGTCAGTGTAAGACCATGCCTG
1 AGTGTAAGACCATGCCTGGGACATGGCATCAACT-TGAGGATGAGCCAGTGTAAGACCATGTCTG
* **
106661884 GGTCATGGCATCGGCCTCGGTTACGGTAGTT
65 GGACATGGCATCGGCCTCGGTTA-GGTAGCC
* * * *
106661915 AGTGTAAGACCATGTCTGGGATATGGCATCAACTTGATGTATGAGCCAGTGTAAGACCATGTTTG
1 AGTGTAAGACCATGCCTGGGACATGGCATCAACTTGA-GGATGAGCCAGTGTAAGACCATGTCTG
*
106661980 GGGCATGGCATCGG
65 GGACATGGCATCGG
106661994 TATCCTACCT
Statistics
Matches: 141, Mismatches: 25, Indels: 16
0.77 0.14 0.09
Matches are distributed among these distances:
93 3 0.02
94 37 0.26
95 33 0.23
96 68 0.48
ACGTcount: A:0.23, C:0.18, G:0.32, T:0.26
Consensus pattern (94 bp):
AGTGTAAGACCATGCCTGGGACATGGCATCAACTTGAGGATGAGCCAGTGTAAGACCATGTCTGG
GACATGGCATCGGCCTCGGTTAGGTAGCC
Found at i:106670022 original size:12 final size:12
Alignment explanation
Indices: 106670005--106670034 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
106669995 ACAAAATCCA
106670005 AATTTAATTTCC
1 AATTTAATTTCC
*
106670017 AATTTAATTTCT
1 AATTTAATTTCC
106670029 AATTTA
1 AATTTA
106670035 TTTAATTATT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.37, C:0.10, G:0.00, T:0.53
Consensus pattern (12 bp):
AATTTAATTTCC
Found at i:106674622 original size:13 final size:13
Alignment explanation
Indices: 106674606--106674640 Score: 52
Period size: 13 Copynumber: 2.7 Consensus size: 13
106674596 TCGTGTGTGA
106674606 CACACGGCCAGGT
1 CACACGGCCAGGT
*
106674619 CACACAGCCAGGT
1 CACACGGCCAGGT
*
106674632 GACACGGCC
1 CACACGGCC
106674641 GTGCGTCCCC
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
13 19 1.00
ACGTcount: A:0.26, C:0.40, G:0.29, T:0.06
Consensus pattern (13 bp):
CACACGGCCAGGT
Found at i:106678307 original size:20 final size:20
Alignment explanation
Indices: 106678282--106678331 Score: 91
Period size: 20 Copynumber: 2.5 Consensus size: 20
106678272 AGAGTTGTAT
106678282 GAAATTTTTCACAAAATCCC
1 GAAATTTTTCACAAAATCCC
106678302 GAAATTTTTCACAAAATCCC
1 GAAATTTTTCACAAAATCCC
*
106678322 AAAATTTTTC
1 GAAATTTTTC
106678332 TCACTTACAA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 29 1.00
ACGTcount: A:0.40, C:0.22, G:0.04, T:0.34
Consensus pattern (20 bp):
GAAATTTTTCACAAAATCCC
Found at i:106679844 original size:31 final size:31
Alignment explanation
Indices: 106679733--106679846 Score: 167
Period size: 31 Copynumber: 3.7 Consensus size: 31
106679723 CTTGTCACTT
106679733 GTAGCCGAAGCTACCA-TTATTCACTGATCAG
1 GTAGCCGAAGCTACCACTT-TTCACTGATCAG
* * * *
106679764 GTAGCTGGAGCTACCATTTTTCACTGGTCAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
106679795 GTAGCCGAAGCTACCACTTTTCACTGATCAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
*
106679826 GTAGCCGAAGCTATCACTTTT
1 GTAGCCGAAGCTACCACTTTT
106679847 AACTTGTCAT
Statistics
Matches: 74, Mismatches: 8, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
31 72 0.97
32 2 0.03
ACGTcount: A:0.25, C:0.25, G:0.21, T:0.29
Consensus pattern (31 bp):
GTAGCCGAAGCTACCACTTTTCACTGATCAG
Found at i:106679923 original size:50 final size:50
Alignment explanation
Indices: 106679826--106680002 Score: 246
Period size: 50 Copynumber: 3.5 Consensus size: 50
106679816 CACTGATCAG
* * * *
106679826 GTAGCCGAAGCTATCACTTTTAACTTGTCATTTGTCCTTGATTAGATAAGT
1 GTAGCCGAAGCTATCACTTATCACTT-TCACTTGTCCTTGATCAGATAAGT
* * *
106679877 GTAGTCGAAACTATCACTTATCACTTTCACTTGTTCTTGATCAGATAAGT
1 GTAGCCGAAGCTATCACTTATCACTTTCACTTGTCCTTGATCAGATAAGT
* *
106679927 GTAACCGAAGCTATCACTTATCACTTTCACTTATCCTTGATCAGATAAGT
1 GTAGCCGAAGCTATCACTTATCACTTTCACTTGTCCTTGATCAGATAAGT
* *
106679977 ATAGCCGAAGCTATCTCTTATCACTT
1 GTAGCCGAAGCTATCACTTATCACTT
106680003 GTTGCCATGG
Statistics
Matches: 111, Mismatches: 15, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
50 89 0.80
51 22 0.20
ACGTcount: A:0.28, C:0.21, G:0.14, T:0.37
Consensus pattern (50 bp):
GTAGCCGAAGCTATCACTTATCACTTTCACTTGTCCTTGATCAGATAAGT
Found at i:106680139 original size:14 final size:15
Alignment explanation
Indices: 106680120--106680148 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
106680110 TTTTATCATC
106680120 AACACAT-ATGAAAT
1 AACACATCATGAAAT
106680134 AACACATCATGAAAT
1 AACACATCATGAAAT
106680149 TCATAAAATT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 7 0.50
15 7 0.50
ACGTcount: A:0.55, C:0.17, G:0.07, T:0.21
Consensus pattern (15 bp):
AACACATCATGAAAT
Found at i:106683193 original size:23 final size:23
Alignment explanation
Indices: 106683157--106683200 Score: 61
Period size: 23 Copynumber: 1.9 Consensus size: 23
106683147 AATTTAATCG
* *
106683157 TTACATATTATTTTGTTTTATTC
1 TTACAAATTATTTTATTTTATTC
*
106683180 TTACAAATTCTTTTATTTTAT
1 TTACAAATTATTTTATTTTAT
106683201 GACTAGAAGC
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 18 1.00
ACGTcount: A:0.25, C:0.09, G:0.02, T:0.64
Consensus pattern (23 bp):
TTACAAATTATTTTATTTTATTC
Found at i:106686787 original size:15 final size:16
Alignment explanation
Indices: 106686750--106686787 Score: 51
Period size: 15 Copynumber: 2.4 Consensus size: 16
106686740 ATCAAATATT
*
106686750 TTTTTTTCATTTTTCA
1 TTTTTTTCATATTTCA
*
106686766 ATTTTTTC-TATTTCA
1 TTTTTTTCATATTTCA
106686781 TTTTTTT
1 TTTTTTT
106686788 AGAGAACAAA
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
15 12 0.63
16 7 0.37
ACGTcount: A:0.13, C:0.11, G:0.00, T:0.76
Consensus pattern (16 bp):
TTTTTTTCATATTTCA
Found at i:106695709 original size:14 final size:13
Alignment explanation
Indices: 106695680--106695724 Score: 51
Period size: 12 Copynumber: 3.6 Consensus size: 13
106695670 AGTGGGTGGA
106695680 AATAATATT-A-T
1 AATAATATTAAGT
106695691 AATAATATTAAAGT
1 AATAATATT-AAGT
*
106695705 TATAATA-TAAGT
1 AATAATATTAAGT
106695717 AATAATAT
1 AATAATAT
106695725 GTATATATTA
Statistics
Matches: 28, Mismatches: 2, Indels: 6
0.78 0.06 0.17
Matches are distributed among these distances:
11 9 0.32
12 10 0.36
13 2 0.07
14 7 0.25
ACGTcount: A:0.56, C:0.00, G:0.04, T:0.40
Consensus pattern (13 bp):
AATAATATTAAGT
Found at i:106696699 original size:41 final size:40
Alignment explanation
Indices: 106696642--106696718 Score: 102
Period size: 40 Copynumber: 1.9 Consensus size: 40
106696632 ATAGTGATAT
*
106696642 TCGGGCTTTCATCCTAGCAAGCTTAATGCTGGTGAATGTAA
1 TCGGGCTTTCATCCTAGC-AGCTTAATGCCGGTGAATGTAA
* *
106696683 TCGGGCTTT-ATGCCTAGCAGGTTATTGCCGGTGAAT
1 TCGGGCTTTCAT-CCTAGCAGCTTAATGCCGGTGAAT
106696719 AATATCAGAC
Statistics
Matches: 32, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.21, C:0.19, G:0.27, T:0.32
Consensus pattern (40 bp):
TCGGGCTTTCATCCTAGCAGCTTAATGCCGGTGAATGTAA
Found at i:106698459 original size:40 final size:40
Alignment explanation
Indices: 106698413--106698576 Score: 224
Period size: 40 Copynumber: 4.1 Consensus size: 40
106698403 TCGGATTTAA
* * *
106698413 CCGGATATAGCT-ACTAGCTCGAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTAGCACAAATGCCTTCGGGACTTAGC
* *
106698453 CCGGATATAGTAACTCGCACCAATGCCTTCGGGACTTAGC
1 CCGGATATAGTAACTAGCACAAATGCCTTCGGGACTTAGC
*
106698493 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
1 CCGGATATAGTAACTAGCACAAATGCCTTCGGGACTTAGC
* *
106698533 CCGGA-ACTAGTCACTAGCGCAAATGCCTTCGGGACTTAGC
1 CCGGATA-TAGTAACTAGCACAAATGCCTTCGGGACTTAGC
106698573 CCGG
1 CCGG
106698577 TTATCATCCA
Statistics
Matches: 114, Mismatches: 8, Indels: 4
0.90 0.06 0.03
Matches are distributed among these distances:
39 2 0.02
40 112 0.98
ACGTcount: A:0.25, C:0.29, G:0.24, T:0.21
Consensus pattern (40 bp):
CCGGATATAGTAACTAGCACAAATGCCTTCGGGACTTAGC
Found at i:106706592 original size:40 final size:41
Alignment explanation
Indices: 106706487--106706610 Score: 121
Period size: 40 Copynumber: 3.1 Consensus size: 41
106706477 CGGGATTTCA
* * *
106706487 CCGG-ATATAGCT-ACTAGCTCGAATGCCTTCGGGACATAGC
1 CCGGAATATAG-TAACTAGCACAAATGCCTTCGGGACTTAGC
* * *
106706527 CC-AAATATAGTAACTCGCACCAATGCCTTCGGGACTTAGC
1 CCGGAATATAGTAACTAGCACAAATGCCTTCGGGACTTAGC
* * * *
106706567 CCGGAA-CTAGTCACTAGCGCAAATGCCTTCTGGACTTAGC
1 CCGGAATATAGTAACTAGCACAAATGCCTTCGGGACTTAGC
106706607 CCGG
1 CCGG
106706611 TTATCATCCA
Statistics
Matches: 69, Mismatches: 12, Indels: 6
0.79 0.14 0.07
Matches are distributed among these distances:
39 1 0.01
40 66 0.96
41 2 0.03
ACGTcount: A:0.26, C:0.30, G:0.23, T:0.22
Consensus pattern (41 bp):
CCGGAATATAGTAACTAGCACAAATGCCTTCGGGACTTAGC
Found at i:106714316 original size:14 final size:14
Alignment explanation
Indices: 106714297--106714324 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
106714287 TCCGAGTTAG
106714297 AAAAATATTTTTTT
1 AAAAATATTTTTTT
106714311 AAAAATATTTTTTT
1 AAAAATATTTTTTT
106714325 TTCTATGTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (14 bp):
AAAAATATTTTTTT
Found at i:106714579 original size:14 final size:13
Alignment explanation
Indices: 106714550--106714594 Score: 51
Period size: 12 Copynumber: 3.6 Consensus size: 13
106714540 AGTGGGTGGA
106714550 AATAATATT-A-T
1 AATAATATTAAGT
106714561 AATAATATTAAAGT
1 AATAATATT-AAGT
*
106714575 TATAATA-TAAGT
1 AATAATATTAAGT
106714587 AATAATAT
1 AATAATAT
106714595 GTATATTATA
Statistics
Matches: 28, Mismatches: 2, Indels: 6
0.78 0.06 0.17
Matches are distributed among these distances:
11 9 0.32
12 10 0.36
13 2 0.07
14 7 0.25
ACGTcount: A:0.56, C:0.00, G:0.04, T:0.40
Consensus pattern (13 bp):
AATAATATTAAGT
Found at i:106714610 original size:26 final size:26
Alignment explanation
Indices: 106714560--106714610 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
106714550 AATAATATTA
*
106714560 TAATAATATTAAAGTTATAATATAAG
1 TAATAATATTAAAGTTATAACATAAG
*
106714586 TAATAATATGTATA-TTATAACATAA
1 TAATAATAT-TAAAGTTATAACATAA
106714611 ATTTAAAAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 19 0.86
27 3 0.14
ACGTcount: A:0.53, C:0.02, G:0.06, T:0.39
Consensus pattern (26 bp):
TAATAATATTAAAGTTATAACATAAG
Found at i:106715806 original size:50 final size:50
Alignment explanation
Indices: 106715752--106715931 Score: 143
Period size: 50 Copynumber: 3.6 Consensus size: 50
106715742 TCGGCCACAT
* *
106715752 AGGTATGTACATATGTGATGTTATA-TTGAATCTTGAATATTCGACCATGA
1 AGGTATGCACATATGTGATATTATATTTGAATCTTGAATATTCGACCAT-A
* * *
106715802 AGGTATGCACAAAAGTGATATTATATTTGAAT-TTGTATATTC-AGCCATA
1 AGGTATGCACATATGTGATATTATATTTGAATCTTGAATATTCGA-CCATA
* * * * * * * * * *
106715851 TGAGTAAGTACTTAGGTGATGTTAAATTTG-ATCTTGCATATTTGGCCATA
1 AG-GTATGCACATATGTGATATTATATTTGAATCTTGAATATTCGACCATA
* *
106715901 TAGGTATGCACATTTGTGATATTATCTTTGA
1 -AGGTATGCACATATGTGATATTATATTTGA
106715932 TTCTCTATAA
Statistics
Matches: 98, Mismatches: 25, Indels: 13
0.72 0.18 0.10
Matches are distributed among these distances:
49 5 0.05
50 86 0.88
51 7 0.07
ACGTcount: A:0.31, C:0.10, G:0.19, T:0.39
Consensus pattern (50 bp):
AGGTATGCACATATGTGATATTATATTTGAATCTTGAATATTCGACCATA
Found at i:106715954 original size:100 final size:100
Alignment explanation
Indices: 106715766--106715955 Score: 217
Period size: 100 Copynumber: 1.9 Consensus size: 100
106715756 ATGTACATAT
*
106715766 GTGATGTTATATTGAATCTTGAATATTCGACCATGAAGGTATGCACAAAAGTGATATTATATTTG
1 GTGATGTTAAATTGAATCTTGAATATTCGACCATGAAGGTATGCACAAAAGTGATATTATATTTG
* * *
106715831 AATTTGTATATTCAGCCATATGAGTAAGTACTTAG
66 AATTTCTATAATCAGCCAAATGAGTAAGTACTTAG
* * * *** *
106715866 GTGATGTTAAATTTG-ATCTTGCATATTTGGCCAT-ATAGGTATGCACATTTGTGATATTATCTT
1 GTGATGTTAAA-TTGAATCTTGAATATTCGACCATGA-AGGTATGCACAAAAGTGATATTATATT
106715929 TG-ATTCTCTATAATC-GACCAAATGAGT
64 TGAATT-TCTATAATCAG-CCAAATGAGT
106715956 GATGTTGGCT
Statistics
Matches: 75, Mismatches: 11, Indels: 8
0.80 0.12 0.09
Matches are distributed among these distances:
99 5 0.07
100 67 0.89
101 3 0.04
ACGTcount: A:0.31, C:0.12, G:0.18, T:0.39
Consensus pattern (100 bp):
GTGATGTTAAATTGAATCTTGAATATTCGACCATGAAGGTATGCACAAAAGTGATATTATATTTG
AATTTCTATAATCAGCCAAATGAGTAAGTACTTAG
Found at i:106718910 original size:26 final size:26
Alignment explanation
Indices: 106718830--106718948 Score: 98
Period size: 26 Copynumber: 4.6 Consensus size: 26
106718820 TATTAAACTG
* *
106718830 TTTTAAATTGTTTTAGATA-TATT-A
1 TTTTAAATTGTTTTATACATTATTCA
* * * * *
106718854 TTTTAAATTATTTCATATACTATACA
1 TTTTAAATTGTTTTATACATTATTCA
* * *
106718880 CTTTAAATTGTTTTGTACATTATTTA
1 TTTTAAATTGTTTTATACATTATTCA
**
106718906 TTTTAAATTTGTTTTATGTATTATTCA
1 TTTTAAA-TTGTTTTATACATTATTCA
*
106718933 TTTTAATTTGTTTTAT
1 TTTTAAATTGTTTTAT
106718949 TATTTACTTT
Statistics
Matches: 74, Mismatches: 18, Indels: 4
0.77 0.19 0.04
Matches are distributed among these distances:
24 16 0.22
25 3 0.04
26 34 0.46
27 21 0.28
ACGTcount: A:0.29, C:0.05, G:0.06, T:0.60
Consensus pattern (26 bp):
TTTTAAATTGTTTTATACATTATTCA
Found at i:106718943 original size:48 final size:48
Alignment explanation
Indices: 106718891--106718983 Score: 116
Period size: 48 Copynumber: 1.9 Consensus size: 48
106718881 TTTAAATTGT
* * * *
106718891 TTTG-TACATTATTTATTTTAAATTTGTTTTATGTATTATTCATTTTAA
1 TTTGTTACATTATTTACTTTAAATTT-TTTCATATATTATTAATTTTAA
**
106718939 TTTGTTTTATTATTTACTTTAAATTTTTTCATATATTATTAATTT
1 TTTGTTACATTATTTACTTTAAATTTTTTCATATATTATTAATTT
106718984 CAAATTTTTA
Statistics
Matches: 38, Mismatches: 6, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
48 20 0.53
49 18 0.47
ACGTcount: A:0.27, C:0.04, G:0.04, T:0.65
Consensus pattern (48 bp):
TTTGTTACATTATTTACTTTAAATTTTTTCATATATTATTAATTTTAA
Found at i:106719001 original size:26 final size:24
Alignment explanation
Indices: 106718881--106719003 Score: 81
Period size: 26 Copynumber: 4.9 Consensus size: 24
106718871 TACTATACAC
* *
106718881 TTTAAATTGTTT-TGTACATTATTTAT
1 TTTAAATTTTTTATGT--ATTA-TTAA
*
106718907 TTTAAATTTGTTTTATGTATTATTCA
1 TTTAAA-TT-TTTTATGTATTATTAA
* * *
106718933 TTTTAATTTGTT-T-TATTATTTAC
1 TTTAAATTTTTTATGTATTA-TTAA
*
106718956 TTTAAATTTTTTCATATATTATTAA
1 TTTAAATTTTTT-ATGTATTATTAA
106718981 TTTCAAATTTTTATATGTATTAT
1 TTT-AAATTTTT-TATGTATTAT
106719004 CTATTTTTTT
Statistics
Matches: 77, Mismatches: 11, Indels: 18
0.73 0.10 0.17
Matches are distributed among these distances:
22 5 0.06
23 13 0.17
24 3 0.04
25 9 0.12
26 34 0.44
27 7 0.09
28 3 0.04
29 3 0.04
ACGTcount: A:0.28, C:0.04, G:0.05, T:0.63
Consensus pattern (24 bp):
TTTAAATTTTTTATGTATTATTAA
Found at i:106719009 original size:26 final size:24
Alignment explanation
Indices: 106718831--106719009 Score: 75
Period size: 26 Copynumber: 7.1 Consensus size: 24
106718821 ATTAAACTGT
*
106718831 TTTAAATTGTTTT-AGATA-TATTA
1 TTTAAATT-TTTTCATATATTATTA
* * *
106718854 TTTTAAATTATTTCATATACTATACA
1 -TTTAAATTTTTTCATATATTAT-TA
* *
106718880 CTTTAAATTGTTTT-GTACATTATTTA
1 -TTTAAATT-TTTTCATATATTA-TTA
* *
106718906 TTTTAAATTTGTTTTATGTATTATTCA
1 -TTTAAATTT-TTTCATATATTATT-A
* *
106718933 TTTTAATTTGTT--T-TATTATTTA
1 TTTAAATTTTTTCATATATTA-TTA
106718955 CTTTAAATTTTTTCATATATTATTAA
1 -TTTAAATTTTTTCATATATTATT-A
*
106718981 TTTCAAATTTTTAT-ATGTATTATCTA
1 TTT-AAATTTTT-TCATATATTAT-TA
106719007 TTT
1 TTT
106719010 TTTTTATATA
Statistics
Matches: 120, Mismatches: 18, Indels: 32
0.71 0.11 0.19
Matches are distributed among these distances:
22 6 0.05
23 16 0.13
24 12 0.10
25 12 0.10
26 62 0.52
27 12 0.10
ACGTcount: A:0.30, C:0.06, G:0.04, T:0.60
Consensus pattern (24 bp):
TTTAAATTTTTTCATATATTATTA
Found at i:106720683 original size:92 final size:92
Alignment explanation
Indices: 106720526--106720696 Score: 299
Period size: 92 Copynumber: 1.9 Consensus size: 92
106720516 CGCCCATAAG
* *
106720526 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAGTGAACTCGGACTCAACTCAA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAGTGAACTCGGACTCAACTCAA
106720591 CGAGTTCGGATGCCTAGTTACATCTCA
66 CGAGTTCGGATGCCTAGTTACATCTCA
*
106720618 CGAACTCGGACTCAACTCAACGAGTTCGGACATT-GCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCAT-AGTGAACTCGGACTCAACTCA
106720682 ACGAGTTCGGATGCC
65 ACGAGTTCGGATGCC
106720697 AACCATCCTA
Statistics
Matches: 75, Mismatches: 3, Indels: 2
0.94 0.04 0.03
Matches are distributed among these distances:
91 8 0.11
92 67 0.89
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.21
Consensus pattern (92 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCA
Found at i:106720692 original size:45 final size:45
Alignment explanation
Indices: 106720519--106720692 Score: 203
Period size: 45 Copynumber: 3.8 Consensus size: 45
106720509 TGTAACCCGC
* * *
106720519 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATT-GCAT
* *
106720565 CCAT-AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTGCAT
*
106720614 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTGCAT
*
106720656 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
106720693 TGCCAACCAT
Statistics
Matches: 110, Mismatches: 9, Indels: 19
0.80 0.07 0.14
Matches are distributed among these distances:
42 5 0.05
43 2 0.02
44 3 0.03
45 58 0.53
46 4 0.04
47 30 0.27
48 3 0.03
49 3 0.03
50 2 0.02
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (45 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTGCAT
Found at i:106723103 original size:30 final size:30
Alignment explanation
Indices: 106723059--106723147 Score: 101
Period size: 30 Copynumber: 3.0 Consensus size: 30
106723049 CAAAGATAAC
106723059 AAGAAAACC-GAATAAAGAAATCCAAGATA
1 AAGAAAACCAGAATAAAGAAATCCAAGATA
* *
106723088 GAGAAACCCAGAATAAAGAAATCC-AGAATA
1 AAGAAAACCAGAATAAAGAAATCCAAG-ATA
* * * *
106723118 AAGATATCCAGGATAAAGAAACCCAAGATA
1 AAGAAAACCAGAATAAAGAAATCCAAGATA
106723148 CGATACTATG
Statistics
Matches: 50, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
29 9 0.18
30 39 0.78
31 2 0.04
ACGTcount: A:0.57, C:0.16, G:0.16, T:0.11
Consensus pattern (30 bp):
AAGAAAACCAGAATAAAGAAATCCAAGATA
Found at i:106723107 original size:15 final size:15
Alignment explanation
Indices: 106723059--106723138 Score: 92
Period size: 15 Copynumber: 5.4 Consensus size: 15
106723049 CAAAGATAAC
*
106723059 AAGAAAACC-GAATA
1 AAGAAATCCAGAATA
106723073 AAGAAATCCA-AGATA
1 AAGAAATCCAGA-ATA
* *
106723088 GAGAAACCCAGAATA
1 AAGAAATCCAGAATA
106723103 AAGAAATCCAGAATA
1 AAGAAATCCAGAATA
* *
106723118 AAGATATCCAGGATA
1 AAGAAATCCAGAATA
106723133 AAGAAA
1 AAGAAA
106723139 CCCAAGATAC
Statistics
Matches: 55, Mismatches: 8, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
14 9 0.16
15 45 0.82
16 1 0.02
ACGTcount: A:0.59, C:0.14, G:0.16, T:0.11
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:106723147 original size:15 final size:15
Alignment explanation
Indices: 106723070--106723147 Score: 79
Period size: 15 Copynumber: 5.2 Consensus size: 15
106723060 AGAAAACCGA
106723070 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
* *
106723085 ATAGAGAAA-CCCAG
1 ATAAAGAAATCCAAG
106723099 AATAAAGAAATCC-AG
1 -ATAAAGAAATCCAAG
* *
106723114 AATAAAGATATCCAGG
1 -ATAAAGAAATCCAAG
*
106723130 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
106723145 ATA
1 ATA
106723148 CGATACTATG
Statistics
Matches: 52, Mismatches: 8, Indels: 6
0.79 0.12 0.09
Matches are distributed among these distances:
14 4 0.08
15 45 0.87
16 3 0.06
ACGTcount: A:0.56, C:0.15, G:0.15, T:0.13
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:106726162 original size:47 final size:49
Alignment explanation
Indices: 106726042--106726219 Score: 198
Period size: 46 Copynumber: 3.8 Consensus size: 49
106726032 TGTAACCCGC
* *
106726042 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGG--G-C-GTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGCCAGTT-ACAT
*
106726088 CCAT-AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGCC-AGTTACAT
* * *
106726137 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGA---CATTTGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGCCAGTTACAT
*
106726180 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGC
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGC
106726220 TCAACCATCC
Statistics
Matches: 112, Mismatches: 8, Indels: 21
0.79 0.06 0.15
Matches are distributed among these distances:
43 6 0.05
44 2 0.02
45 31 0.28
46 33 0.29
47 31 0.28
48 3 0.03
49 3 0.03
50 3 0.03
ACGTcount: A:0.28, C:0.29, G:0.21, T:0.21
Consensus pattern (49 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGCCAGTTACAT
Found at i:106726217 original size:93 final size:92
Alignment explanation
Indices: 106726049--106726219 Score: 297
Period size: 92 Copynumber: 1.8 Consensus size: 92
106726039 CGCCCATAAG
* *
106726049 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAGTGAACTCGGACTCAACTCAA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAGTGAACTCGGACTCAACTCAA
106726114 CGAGTTCGGATGCCTAGTTACATCTCA
66 CGAGTTCGGATGCCTAGTTACATCTCA
* *
106726141 CGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCAT-AGTGAACTCGGACTCAACTCA
106726206 ACGAGTTCGGATGC
65 ACGAGTTCGGATGC
106726220 TCAACCATCC
Statistics
Matches: 74, Mismatches: 4, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
92 39 0.53
93 35 0.47
ACGTcount: A:0.27, C:0.29, G:0.22, T:0.22
Consensus pattern (92 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCA
Found at i:106727610 original size:17 final size:16
Alignment explanation
Indices: 106727562--106727620 Score: 59
Period size: 16 Copynumber: 3.8 Consensus size: 16
106727552 TTTTTTCACA
*
106727562 TTATTTATTTTA-AAT
1 TTATTTATTTTACATT
* *
106727577 TCATTTATTAT-CATT
1 TTATTTATTTTACATT
*
106727592 TTAATTTTTTTTACATT
1 TT-ATTTATTTTACATT
106727609 TTATTTATTTTA
1 TTATTTATTTTA
106727621 AGTTGCTTTA
Statistics
Matches: 34, Mismatches: 7, Indels: 5
0.74 0.15 0.11
Matches are distributed among these distances:
15 12 0.35
16 16 0.47
17 6 0.18
ACGTcount: A:0.27, C:0.05, G:0.00, T:0.68
Consensus pattern (16 bp):
TTATTTATTTTACATT
Found at i:106727634 original size:21 final size:21
Alignment explanation
Indices: 106727610--106727662 Score: 54
Period size: 22 Copynumber: 2.4 Consensus size: 21
106727600 TTTTACATTT
*
106727610 TATTTATTTTAAGTTGCTT-TA
1 TATTTATTTTAAATTG-TTATA
*
106727631 TATTTTTTTTTAAATTGTTATA
1 TA-TTTATTTTAAATTGTTATA
106727653 TATATTATTT
1 TAT-TTATTT
106727663 AATTTATTGG
Statistics
Matches: 26, Mismatches: 3, Indels: 5
0.76 0.09 0.15
Matches are distributed among these distances:
21 5 0.19
22 21 0.81
ACGTcount: A:0.26, C:0.02, G:0.06, T:0.66
Consensus pattern (21 bp):
TATTTATTTTAAATTGTTATA
Found at i:106729578 original size:19 final size:19
Alignment explanation
Indices: 106729554--106729598 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 19
106729544 TGTCTCTTTT
* *
106729554 TGCATT-CATTTCATACATC
1 TGCATTACATTGCAT-CATA
106729573 TGCATTACATTGCATCATA
1 TGCATTACATTGCATCATA
106729592 TGCATTA
1 TGCATTA
106729599 AAATTCACAA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
19 16 0.70
20 7 0.30
ACGTcount: A:0.29, C:0.22, G:0.09, T:0.40
Consensus pattern (19 bp):
TGCATTACATTGCATCATA
Found at i:106733691 original size:44 final size:45
Alignment explanation
Indices: 106733643--106733797 Score: 129
Period size: 44 Copynumber: 3.5 Consensus size: 45
106733633 AGCCACTACC
* * *
106733643 CTTATTTCTTTGAAGTTACAGTGGAGCAGGTTAAAGTTACA-AGT
1 CTTATTTCTTTGAAGTTGCAGTGGAGCAGGTTAAAGATACAGAAT
* * * * *
106733687 CTTATCTCCTTGAAGTTGCAGTGGAGCATG-CAGAAGATAGAGAAT
1 CTTATTTCTTTGAAGTTGCAGTGGAGCAGGTTA-AAGATACAGAAT
* * * *
106733732 CTTATTTCTCTGAAGTTGCAGTAGAGCAGATTAAAGCA-ATA-AAT
1 CTTATTTCTTTGAAGTTGCAGTGGAGCAGGTTAAAG-ATACAGAAT
* **
106733776 CCTATACCTTTGAAGTTGCAGT
1 CTTATTTCTTTGAAGTTGCAGT
106733798 CGGTCGGACC
Statistics
Matches: 87, Mismatches: 20, Indels: 8
0.76 0.17 0.07
Matches are distributed among these distances:
43 1 0.01
44 53 0.61
45 31 0.36
46 2 0.02
ACGTcount: A:0.31, C:0.15, G:0.22, T:0.32
Consensus pattern (45 bp):
CTTATTTCTTTGAAGTTGCAGTGGAGCAGGTTAAAGATACAGAAT
Found at i:106734137 original size:51 final size:49
Alignment explanation
Indices: 106733916--106734406 Score: 325
Period size: 44 Copynumber: 10.6 Consensus size: 49
106733906 TTACCTTGGA
* * * * *
106733916 AAATCTTATCTTCCTGAAGTTGTAGTAGAGAAGATTGAAGC-----CAC
1 AAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGCTAAAATAC
* * *
106733960 AAACCTTATCTCCCTGAAGTTGCGGTAGAGCA-AGTTGAAG-T----TA-
1 AAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGA-TTGAAGCTAAAATAC
*
106734003 AAAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGGTTGAAG-T----TAC
1 AAA-TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGCTAAAATAC
*
106734048 AAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGCTACAAATCAC
1 AAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGCTA-AAAT-AC
* * * * *
106734099 AAACCTTATCTCCCTGAAGTTGTAGCGGAGTAGGTTGAA-CT----TAC
1 AAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGCTAAAATAC
* * * * * * *
106734143 AAGTCTTATCTCCCTGAAATTGCAATGGAGCAGACT-AA-ATATAGT--
1 AAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGCTAAAATAC
* * *
106734188 AAATCTTATCTCCCTAAAATTGCAGTGGAGCAGATTGAAGCTTCAAATCAC
1 AAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGC-TAAAAT-AC
* * * *
106734239 AAACCTTATCTTCCTGAAGTTGCAGTGGAGTAGGTTGAAG-T----TAC
1 AAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGCTAAAATAC
* * * * *
106734283 AAGTCTTATCTCCCTGAAGTTGCAGTGGAGTAGACTGAAG-----GTAG
1 AAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGCTAAAATAC
* *
106734327 GAATCTTATCTCCCTGAAGTTGTAGTGGAGCAGATTGAAGCTACAAATCAC
1 AAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGCTA-AAAT-AC
*
106734378 AAATCTTATTTCCCTGAAGTTGCAGTGGA
1 AAATCTTATCTCCCTGAAGTTGCAGTGGA
106734407 ACATATCAAA
Statistics
Matches: 359, Mismatches: 58, Indels: 53
0.76 0.12 0.11
Matches are distributed among these distances:
43 7 0.02
44 208 0.58
45 37 0.10
46 2 0.01
47 1 0.00
48 3 0.01
49 1 0.00
50 4 0.01
51 96 0.27
ACGTcount: A:0.31, C:0.19, G:0.22, T:0.29
Consensus pattern (49 bp):
AAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGCTAAAATAC
Found at i:106734143 original size:95 final size:93
Alignment explanation
Indices: 106733916--106734406 Score: 388
Period size: 95 Copynumber: 5.3 Consensus size: 93
106733906 TTACCTTGGA
* * * * * **
106733916 AAATCTTATCTTCCTGAAGTTGTAGTAGAGAAGATTGAAGC-CACAAACCTTATCTCCCTGAAGT
1 AAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAA-CTTACAAGTCTTATCTCCCTGAAGT
* *
106733980 TGCGGTAGAGCA-AGTTGAAG-T----TA-
65 TGCAGTGGAGCAGA-TTGAAGCTAAAATAC
* *
106734003 AAAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGGTTGAAGTTACAAGTCTTATCTCCCTGAAGT
1 AAA-TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAACTTACAAGTCTTATCTCCCTGAAGT
106734068 TGCAGTGGAGCAGATTGAAGCTACAAATCAC
65 TGCAGTGGAGCAGATTGAAGCTA-AAAT-AC
* * * * * *
106734099 AAACCTTATCTCCCTGAAGTTGTAGCGGAGTAGGTTGAACTTACAAGTCTTATCTCCCTGAAATT
1 AAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAACTTACAAGTCTTATCTCCCTGAAGTT
* * * * *
106734164 GCAATGGAGCAGACT-AA-ATATAGT--
66 GCAGTGGAGCAGATTGAAGCTAAAATAC
* * ** *
106734188 AAATCTTATCTCCCTAAAATTGCAGTGGAGCAGATTGAAGCTTCAAATCACAAACCTTATCTTCC
1 AAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAA-C-T----T-ACAAGTCTTATCTCCC
* *
106734253 TGAAGTTGCAGTGGAGTAGGTTGAAG-T----TAC
59 TGAAGTTGCAGTGGAGCAGATTGAAGCTAAAATAC
* * * ** *
106734283 AAGTCTTATCTCCCTGAAGTTGCAGTGGAGTAGACTGAAGGTAGGAA-TCTTATCTCCCTGAAGT
1 AAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAACTTA-CAAGTCTTATCTCCCTGAAGT
*
106734347 TGTAGTGGAGCAGATTGAAGCTACAAATCAC
65 TGCAGTGGAGCAGATTGAAGCTA-AAAT-AC
*
106734378 AAATCTTATTTCCCTGAAGTTGCAGTGGA
1 AAATCTTATCTCCCTGAAGTTGCAGTGGA
106734407 ACATATCAAA
Statistics
Matches: 322, Mismatches: 52, Indels: 52
0.76 0.12 0.12
Matches are distributed among these distances:
87 3 0.01
88 100 0.31
89 38 0.12
90 1 0.00
91 1 0.00
92 2 0.01
93 3 0.01
94 4 0.01
95 134 0.42
96 33 0.10
97 3 0.01
ACGTcount: A:0.31, C:0.19, G:0.22, T:0.29
Consensus pattern (93 bp):
AAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAACTTACAAGTCTTATCTCCCTGAAGTT
GCAGTGGAGCAGATTGAAGCTAAAATAC
Found at i:106734147 original size:139 final size:139
Alignment explanation
Indices: 106733957--106734406 Score: 643
Period size: 139 Copynumber: 3.2 Consensus size: 139
106733947 AGATTGAAGC
* * * * *
106733957 CACAAACCTTATCTCCCTGAAGTTGCGGTAGAGCAAGTTGAAGTTAAAAGTCTTATCTCCCTGAA
1 CACAAACCTTATCTCCCTGAAGTTGCAGTGGAGTAGGTTGAAGTTACAAGTCTTATCTCCCTGAA
**
106734022 GTTGCAGTGGAGCAGGTTGAAGTTA-CAAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGA
66 GTTGCAGTGGAGCAGACTGAAGTTAGCAA-TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGA
106734086 AGCTACAAAT
130 AGCTACAAAT
* * *
106734096 CACAAACCTTATCTCCCTGAAGTTGTAGCGGAGTAGGTTGAACTTACAAGTCTTATCTCCCTGAA
1 CACAAACCTTATCTCCCTGAAGTTGCAGTGGAGTAGGTTGAAGTTACAAGTCTTATCTCCCTGAA
* * * * * *
106734161 ATTGCAATGGAGCAGACT-AAATATAGTAAATCTTATCTCCCTAAAATTGCAGTGGAGCAGATTG
66 GTTGCAGTGGAGCAGACTGAAGT-TAG-CAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTG
*
106734225 AAGCTTCAAAT
129 AAGCTACAAAT
*
106734236 CACAAACCTTATCTTCCTGAAGTTGCAGTGGAGTAGGTTGAAGTTACAAGTCTTATCTCCCTGAA
1 CACAAACCTTATCTCCCTGAAGTTGCAGTGGAGTAGGTTGAAGTTACAAGTCTTATCTCCCTGAA
* * * *
106734301 GTTGCAGTGGAGTAGACTGAAGGTAGGAATCTTATCTCCCTGAAGTTGTAGTGGAGCAGATTGAA
66 GTTGCAGTGGAGCAGACTGAAGTTAGCAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAA
106734366 GCTACAAAT
131 GCTACAAAT
* *
106734375 CACAAATCTTATTTCCCTGAAGTTGCAGTGGA
1 CACAAACCTTATCTCCCTGAAGTTGCAGTGGA
106734407 ACATATCAAA
Statistics
Matches: 273, Mismatches: 34, Indels: 8
0.87 0.11 0.03
Matches are distributed among these distances:
138 3 0.01
139 145 0.53
140 121 0.44
141 4 0.01
ACGTcount: A:0.30, C:0.19, G:0.22, T:0.28
Consensus pattern (139 bp):
CACAAACCTTATCTCCCTGAAGTTGCAGTGGAGTAGGTTGAAGTTACAAGTCTTATCTCCCTGAA
GTTGCAGTGGAGCAGACTGAAGTTAGCAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAA
GCTACAAAT
Found at i:106734473 original size:139 final size:139
Alignment explanation
Indices: 106733957--106734490 Score: 402
Period size: 139 Copynumber: 3.8 Consensus size: 139
106733947 AGATTGAAGC
* * * * ** * *
106733957 CACAAACCTTATCTCCCTGAAGTTGCGGTAGAGCA-AGTTGAAGTTAAAAGTCTTATCTCCCTGA
1 CACAAACCTTATCTTCCTGAAGTTGCAGTGGAACAGA-TCAAAGCTACAAGTCTTATCTCCCTGA
* * * * ** **
106734021 AGTTGCAGTGGAGCAGGTTGAAGTTAC-AAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTG
65 AGCTACAGTAGAGTAGACTGAAGGCACGAA-TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTG
106734085 AAGCTACAAAT
129 AAGCTACAAAT
* * * ** * **
106734096 CACAAACCTTATCTCCCTGAAGTTGTAGCGGAGTAGGTTGAA-CTTACAAGTCTTATCTCCCTGA
1 CACAAACCTTATCTTCCTGAAGTTGCAGTGGAACAGATCAAAGC-TACAAGTCTTATCTCCCTGA
** * * * * * *** * *
106734160 AATTGCAATGGAGCAGACTAAATATA-GTAAATCTTATCTCCCTAAAATTGCAGTGGAGCAGATT
65 AGCTACAGTAGAGTAGACTGAAGGCACG--AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATT
*
106734224 GAAGCTTCAAAT
128 GAAGCTACAAAT
** * ** *
106734236 CACAAACCTTATCTTCCTGAAGTTGCAGTGGAGTAGGTTGAAGTTACAAGTCTTATCTCCCTGAA
1 CACAAACCTTATCTTCCTGAAGTTGCAGTGGAACAGATCAAAGCTACAAGTCTTATCTCCCTGAA
* * * * * *
106734301 GTTGCAGTGGAGTAGACTGAAGGTAGGAATCTTATCTCCCTGAAGTTGTAGTGGAGCAGATTGAA
66 GCTACAGTAGAGTAGACTGAAGGCACGAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAA
106734366 GCTACAAAT
131 GCTACAAAT
* * **
106734375 CACAAATCTTAT-TTCCCTGAAGTTGCAGTGGAACATATCAAAGCTACAAGTC-TAGTCTCGTTG
1 CACAAACCTTATCTT-CCTGAAGTTGCAGTGGAACAGATCAAAGCTACAAGTCTTA-TCTCCCTG
* * * *
106734438 AAGCTATAGTAGAGTGGAGC-GAA-GCACTAATTCTTATAC-CCCAGAAGTTGCAG
64 AAGCTACAGTAGAGTAGA-CTGAAGGCACGAA-TCTTAT-CTCCCTGAAGTTGCAG
106734491 GAGGATGGAA
Statistics
Matches: 331, Mismatches: 52, Indels: 24
0.81 0.13 0.06
Matches are distributed among these distances:
138 8 0.02
139 197 0.60
140 123 0.37
141 3 0.01
ACGTcount: A:0.31, C:0.19, G:0.22, T:0.28
Consensus pattern (139 bp):
CACAAACCTTATCTTCCTGAAGTTGCAGTGGAACAGATCAAAGCTACAAGTCTTATCTCCCTGAA
GCTACAGTAGAGTAGACTGAAGGCACGAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAA
GCTACAAAT
Found at i:106736052 original size:19 final size:20
Alignment explanation
Indices: 106736011--106736052 Score: 59
Period size: 19 Copynumber: 2.1 Consensus size: 20
106736001 GGACTCTTTT
* *
106736011 TTATTATTATTTATTTTAGA
1 TTATTATTATTTATCTTAAA
106736031 TTATT-TTATTTATCTTAAA
1 TTATTATTATTTATCTTAAA
106736050 TTA
1 TTA
106736053 CATATATTAA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
19 15 0.75
20 5 0.25
ACGTcount: A:0.31, C:0.02, G:0.02, T:0.64
Consensus pattern (20 bp):
TTATTATTATTTATCTTAAA
Found at i:106736147 original size:26 final size:26
Alignment explanation
Indices: 106736066--106736185 Score: 91
Period size: 26 Copynumber: 4.7 Consensus size: 26
106736056 ATATTAAACT
***
106736066 ATTTTAAATTGTTTTAGGTA-TATT-
1 ATTTTAAATTGTTTTATACATTATTC
* * * * *
106736090 ATTTTAAATTATTTCATATACTATAC
1 ATTTTAAATTGTTTTATACATTATTC
* * *
106736116 ACTTTAAATTGTTTTGTACATTATTT
1 ATTTTAAATTGTTTTATACATTATTC
**
106736142 ATTTTAAATTTGTTTTATGTATTATTC
1 ATTTTAAA-TTGTTTTATACATTATTC
*
106736169 ATTTTAATTTGTTTTAT
1 ATTTTAAATTGTTTTAT
106736186 TATTTACTTT
Statistics
Matches: 74, Mismatches: 19, Indels: 4
0.76 0.20 0.04
Matches are distributed among these distances:
24 16 0.22
25 3 0.04
26 34 0.46
27 21 0.28
ACGTcount: A:0.29, C:0.05, G:0.07, T:0.59
Consensus pattern (26 bp):
ATTTTAAATTGTTTTATACATTATTC
Found at i:106736180 original size:48 final size:48
Alignment explanation
Indices: 106736128--106736220 Score: 107
Period size: 48 Copynumber: 1.9 Consensus size: 48
106736118 TTTAAATTGT
* * * * *
106736128 TTTG-TACATTATTTATTTTAAATTTGTTTTATGTATTATTCATTTTAA
1 TTTGTTACATTATTTACTTTAAAATT-TTTCATATATTATTAATTTTAA
**
106736176 TTTGTTTTATTATTTACTTTAAAATTTTTCATATATTATTAATTT
1 TTTGTTACATTATTTACTTTAAAATTTTTCATATATTATTAATTT
106736221 CAAATTTTTA
Statistics
Matches: 37, Mismatches: 7, Indels: 2
0.80 0.15 0.04
Matches are distributed among these distances:
48 20 0.54
49 17 0.46
ACGTcount: A:0.28, C:0.04, G:0.04, T:0.63
Consensus pattern (48 bp):
TTTGTTACATTATTTACTTTAAAATTTTTCATATATTATTAATTTTAA
Found at i:106736195 original size:75 final size:76
Alignment explanation
Indices: 106736065--106736240 Score: 175
Period size: 75 Copynumber: 2.3 Consensus size: 76
106736055 TATATTAAAC
*
106736065 TATTTTAAA-TTGTTTTAGGTA-TATTATTTTAAATTATTTCATATACTATACACTTT-AAATTG
1 TATTTTAAATTTGTTTTATGTATTATTATTTTAAATTATTT-ATATA-TATACACTTTAAAATT-
**
106736127 TTTTGTACATTATT
63 TTTCATACATTATT
* * **
106736141 TATTTTAAATTTGTTTTATGTATTATTCATTTTAATTTGTTT-TAT-TATTTACTTTAAAATTTT
1 TATTTTAAATTTGTTTTATGTATTATT-ATTTTAAATTATTTATATATATACACTTTAAAATTTT
*
106736204 TCATATATTATT
65 TCATACATTATT
* * *
106736216 AATTTCAAATTT-TTATATGTATTAT
1 TATTTTAAATTTGTTTTATGTATTAT
106736241 CTTTTTTTTA
Statistics
Matches: 85, Mismatches: 11, Indels: 10
0.80 0.10 0.09
Matches are distributed among these distances:
74 12 0.14
75 29 0.34
76 14 0.16
77 14 0.16
78 4 0.05
79 12 0.14
ACGTcount: A:0.31, C:0.05, G:0.05, T:0.59
Consensus pattern (76 bp):
TATTTTAAATTTGTTTTATGTATTATTATTTTAAATTATTTATATATATACACTTTAAAATTTTT
CATACATTATT
Found at i:106736213 original size:26 final size:24
Alignment explanation
Indices: 106736154--106736233 Score: 67
Period size: 25 Copynumber: 3.3 Consensus size: 24
106736144 TTTAAATTTG
* * *
106736154 TTTTATGTATTATTCATTT-TAAT
1 TTTTATATATTATTAATTTAAAAT
*
106736177 TTGTT-T-TATTATTTACTTTAAAAT
1 TT-TTATATATTA-TTAATTTAAAAT
*
106736201 TTTTCATATATTATTAATTTCAAAT
1 TTTT-ATATATTATTAATTTAAAAT
106736226 TTTTATAT
1 TTTTATAT
106736234 GTATTATCTT
Statistics
Matches: 46, Mismatches: 5, Indels: 11
0.74 0.08 0.18
Matches are distributed among these distances:
22 5 0.11
23 10 0.22
24 11 0.24
25 15 0.33
26 5 0.11
ACGTcount: A:0.30, C:0.05, G:0.03, T:0.62
Consensus pattern (24 bp):
TTTTATATATTATTAATTTAAAAT
Found at i:106736228 original size:25 final size:25
Alignment explanation
Indices: 106736183--106736233 Score: 68
Period size: 25 Copynumber: 2.0 Consensus size: 25
106736173 TAATTTGTTT
*
106736183 TATTATTTACTTTAAAATTTTTCATA
1 TATTATTTAATTTAAAATTTTT-ATA
*
106736209 TATTA-TTAATTTCAAATTTTTATA
1 TATTATTTAATTTAAAATTTTTATA
106736233 T
1 T
106736234 GTATTATCTT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
24 4 0.17
25 14 0.61
26 5 0.22
ACGTcount: A:0.35, C:0.06, G:0.00, T:0.59
Consensus pattern (25 bp):
TATTATTTAATTTAAAATTTTTATA
Found at i:106736238 original size:26 final size:24
Alignment explanation
Indices: 106736135--106736240 Score: 65
Period size: 26 Copynumber: 4.2 Consensus size: 24
106736125 TGTTTTGTAC
* *
106736135 ATTATTTATTTTAAATTTGTTTTATGT
1 ATTA-TTAATTTAAATTT-TTATAT-T
* * *
106736162 ATTATTCATTTTAATTTGT-T-TT
1 ATTATTAATTTAAATTTTTATATT
*
106736184 ATTATTTACTTTAAAATTTTTCATA-T
1 ATTA-TTAATTT-AAATTTTT-ATATT
106736210 ATTATTAATTTCAAATTTTTATATGT
1 ATTATTAATTT-AAATTTTTATAT-T
106736236 ATTAT
1 ATTAT
106736241 CTTTTTTTTA
Statistics
Matches: 62, Mismatches: 10, Indels: 15
0.71 0.11 0.17
Matches are distributed among these distances:
22 5 0.08
23 6 0.10
24 10 0.16
25 15 0.24
26 22 0.35
27 4 0.06
ACGTcount: A:0.30, C:0.04, G:0.04, T:0.62
Consensus pattern (24 bp):
ATTATTAATTTAAATTTTTATATT
Found at i:106736551 original size:17 final size:16
Alignment explanation
Indices: 106736503--106736561 Score: 59
Period size: 16 Copynumber: 3.8 Consensus size: 16
106736493 TTTTTTCACA
*
106736503 TTATTTATTTTA-AAT
1 TTATTTATTTTACATT
* *
106736518 TCATTTATTAT-CATT
1 TTATTTATTTTACATT
*
106736533 TTAATTTTTTTTACATT
1 TT-ATTTATTTTACATT
106736550 TTATTTATTTTA
1 TTATTTATTTTA
106736562 AGTTGCTTTA
Statistics
Matches: 34, Mismatches: 7, Indels: 5
0.74 0.15 0.11
Matches are distributed among these distances:
15 12 0.35
16 16 0.47
17 6 0.18
ACGTcount: A:0.27, C:0.05, G:0.00, T:0.68
Consensus pattern (16 bp):
TTATTTATTTTACATT
Found at i:106752226 original size:27 final size:25
Alignment explanation
Indices: 106752191--106752254 Score: 76
Period size: 24 Copynumber: 2.5 Consensus size: 25
106752181 TTGAGAGTAT
*
106752191 TTTCGGTAATTTTCACACCAGTGGTAA
1 TTTCGGTAATTTT-ACA-CAGGGGTAA
*
106752218 TTTCGGTAA-TTTACATAGGGGTAA
1 TTTCGGTAATTTTACACAGGGGTAA
*
106752242 TTTTGGTAATTTT
1 TTTCGGTAATTTT
106752255 TATTCAAACT
Statistics
Matches: 33, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
24 15 0.45
25 6 0.18
26 3 0.09
27 9 0.27
ACGTcount: A:0.25, C:0.11, G:0.20, T:0.44
Consensus pattern (25 bp):
TTTCGGTAATTTTACACAGGGGTAA
Found at i:106752352 original size:25 final size:25
Alignment explanation
Indices: 106752324--106752378 Score: 85
Period size: 25 Copynumber: 2.2 Consensus size: 25
106752314 TTCACAATCG
106752324 ATTG-GAGTAAATGGTAATTTTGTAA
1 ATTGAGAGT-AATGGTAATTTTGTAA
*
106752349 ATTGAGGGTAATGGTAATTTTGTAA
1 ATTGAGAGTAATGGTAATTTTGTAA
106752374 ATTGA
1 ATTGA
106752379 TGGTAAAACG
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
25 25 0.89
26 3 0.11
ACGTcount: A:0.35, C:0.00, G:0.25, T:0.40
Consensus pattern (25 bp):
ATTGAGAGTAATGGTAATTTTGTAA
Found at i:106752359 original size:26 final size:26
Alignment explanation
Indices: 106752330--106752496 Score: 128
Period size: 25 Copynumber: 6.4 Consensus size: 26
106752320 ATCGATTGGA
*
106752330 GTAAATGGTAATTTTGTAAATTGAGG
1 GTAAATGGTAATTTTGTAAATCGAGG
* *
106752356 GT-AATGGTAATTTTGTAAATTGATG
1 GTAAATGGTAATTTTGTAAATCGAGG
* *
106752381 GTAAAACGGT-ATTCTGTAAATCGAGG
1 GT-AAATGGTAATTTTGTAAATCGAGG
* *
106752407 GTAAAATGGTAAAATTCTATAAATCGAGG
1 GT-AAATGGT--AATTTTGTAAATCGAGG
* * *
106752436 GTATAATGATAATTTGGTAAATAGAGG
1 GTA-AATGGTAATTTTGTAAATCGAGG
* ** *
106752463 GTGAA-CATAA-TTTATAAATCGAGG
1 GTAAATGGTAATTTTGTAAATCGAGG
106752487 GT-AATGGTAA
1 GTAAATGGTAA
106752497 ATTCTACAAA
Statistics
Matches: 115, Mismatches: 19, Indels: 16
0.77 0.13 0.11
Matches are distributed among these distances:
23 2 0.02
24 16 0.14
25 28 0.24
26 26 0.23
27 20 0.17
28 1 0.01
29 22 0.19
ACGTcount: A:0.38, C:0.04, G:0.25, T:0.33
Consensus pattern (26 bp):
GTAAATGGTAATTTTGTAAATCGAGG
Found at i:106752486 original size:24 final size:26
Alignment explanation
Indices: 106752419--106752489 Score: 74
Period size: 27 Copynumber: 2.7 Consensus size: 26
106752409 AAAATGGTAA
* *
106752419 AATTCTATAAATCGAGGGTATAATGAT
1 AATT-TATAAATCGAGGGTAGAATCAT
* *
106752446 AATTTGGTAAATAGAGGGT-GAA-CAT
1 AATTT-ATAAATCGAGGGTAGAATCAT
106752471 AATTTATAAATCGAGGGTA
1 AATTTATAAATCGAGGGTA
106752490 ATGGTAAATT
Statistics
Matches: 36, Mismatches: 6, Indels: 6
0.75 0.12 0.12
Matches are distributed among these distances:
24 11 0.31
25 7 0.19
26 3 0.08
27 15 0.42
ACGTcount: A:0.41, C:0.06, G:0.23, T:0.31
Consensus pattern (26 bp):
AATTTATAAATCGAGGGTAGAATCAT
Found at i:106761604 original size:175 final size:175
Alignment explanation
Indices: 106761313--106761653 Score: 637
Period size: 175 Copynumber: 1.9 Consensus size: 175
106761303 GCGATTGCTG
106761313 CTGATCCAATAAATCAGAATCCTACTCCATGCACTATGTATGATTATGCTAAACCTAATTTAACA
1 CTGATCCAATAAATCAGAATCCTACTCCATGCACTATGTATGATTATGCTAAACCTAATTTAACA
* *
106761378 GGGACTAAGTCAAGCATAGTTAGACCTCCTATTGCTGCAAATAATTTTGAACTGAAACCTAACAC
66 GGAACTAAGTCAAGCATAGTTAGACCTACTATTGCTGCAAATAATTTTGAACTGAAACCTAACAC
106761443 AATTCAAATGATACAACAGTTTGTTCAGTTTGATGGAGCAGGATT
131 AATTCAAATGATACAACAGTTTGTTCAGTTTGATGGAGCAGGATT
106761488 CTGATCCAATAAATCAGAATCCTACTCCATGCACTATGTATGATTATGCTAAACCTAATTTAACA
1 CTGATCCAATAAATCAGAATCCTACTCCATGCACTATGTATGATTATGCTAAACCTAATTTAACA
* *
106761553 GGAACTGAGTCAAGTATAGTTAGACCTACTATTGCTGCAAATAATTTTGAACTGAAACCTAACAC
66 GGAACTAAGTCAAGCATAGTTAGACCTACTATTGCTGCAAATAATTTTGAACTGAAACCTAACAC
*
106761618 AATTCCAATGATACAACAGTTTGTTCAGTTTGATGG
131 AATTCAAATGATACAACAGTTTGTTCAGTTTGATGG
106761654 TTTGCAGGAC
Statistics
Matches: 161, Mismatches: 5, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
175 161 1.00
ACGTcount: A:0.35, C:0.19, G:0.15, T:0.30
Consensus pattern (175 bp):
CTGATCCAATAAATCAGAATCCTACTCCATGCACTATGTATGATTATGCTAAACCTAATTTAACA
GGAACTAAGTCAAGCATAGTTAGACCTACTATTGCTGCAAATAATTTTGAACTGAAACCTAACAC
AATTCAAATGATACAACAGTTTGTTCAGTTTGATGGAGCAGGATT
Found at i:106771677 original size:44 final size:45
Alignment explanation
Indices: 106771629--106771783 Score: 129
Period size: 44 Copynumber: 3.5 Consensus size: 45
106771619 AGCCACTACC
* * *
106771629 CTTATTTCTTTGAAGTTACAGTGGAGCAGGTTAAAGTTACA-AGT
1 CTTATTTCTTTGAAGTTGCAGTGGAGCAGGTTAAAGATACAGAAT
* * * * *
106771673 CTTATCTCCTTGAAGTTGCAGTGGAGCATG-CAGAAGATAGAGAAT
1 CTTATTTCTTTGAAGTTGCAGTGGAGCAGGTTA-AAGATACAGAAT
* * * *
106771718 CTTATTTCTCTGAAGTTGCAGTAGAGCAGATTAAAGCA-ATA-AAT
1 CTTATTTCTTTGAAGTTGCAGTGGAGCAGGTTAAAG-ATACAGAAT
* **
106771762 CCTATACCTTTGAAGTTGCAGT
1 CTTATTTCTTTGAAGTTGCAGT
106771784 CGGTCGGACC
Statistics
Matches: 87, Mismatches: 20, Indels: 8
0.76 0.17 0.07
Matches are distributed among these distances:
43 1 0.01
44 53 0.61
45 31 0.36
46 2 0.02
ACGTcount: A:0.31, C:0.15, G:0.22, T:0.32
Consensus pattern (45 bp):
CTTATTTCTTTGAAGTTGCAGTGGAGCAGGTTAAAGATACAGAAT
Found at i:106771974 original size:44 final size:44
Alignment explanation
Indices: 106771902--106772361 Score: 404
Period size: 44 Copynumber: 10.1 Consensus size: 44
106771892 TTACCTTGGA
* * * * *
106771902 AAATCTTATCTTCCTGAAGTTGTAGTAGAGTAGATTGAAGCCAC
1 AAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGCTAC
* * * *
106771946 AAACCTTATCTCCCTGAAGTTGCGGTAGAGCA-AGTTGAAGTTA-
1 AAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGA-TTGAAGCTAC
* *
106771989 AAAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGGTTGAAGTTAC
1 AAA-TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGCTAC
*
106772034 AAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGCTAC
1 AAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGCTAC
* * * *
106772078 AAATCACAAACCTTATCTCCCTGAAGTTGTAGCGGAGTAGGTTGAA-CTTAC
1 AAAT-------CTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGC-TAC
* * * * * ** *
106772129 AAGTCTTATCTCCCTGAAATTGCAATGGAGCAGACTAAATATAGT
1 AAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGCTA-C
*
106772174 AAATCTTATCTCCCTAAAGTTGCAGTGGAGCAGATTGAAGCTTCAAATCAC
1 AAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAG---C---T-AC
* * * * *
106772225 AAACCTTATCTTCCTGAAGTTGCAGTGGAGTAGGTTGAAGTTAC
1 AAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGCTAC
* * * * *
106772269 AAGTCTTATCTCCCTGAAGTTGCAGTGGAGTAGACTGAAGGTAG
1 AAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGCTAC
* *
106772313 GAATCTTATCTCCCTGAAGTTGTAGTGGAGCAGATTGAAGCTAC
1 AAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGCTAC
106772357 AAATC
1 AAATC
106772362 ACAAATCTTA
Statistics
Matches: 335, Mismatches: 60, Indels: 42
0.77 0.14 0.10
Matches are distributed among these distances:
43 4 0.01
44 220 0.66
45 36 0.11
50 1 0.00
51 73 0.22
52 1 0.00
ACGTcount: A:0.30, C:0.18, G:0.23, T:0.29
Consensus pattern (44 bp):
AAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGCTAC
Found at i:106772129 original size:95 final size:93
Alignment explanation
Indices: 106771902--106772392 Score: 397
Period size: 95 Copynumber: 5.3 Consensus size: 93
106771892 TTACCTTGGA
* * * * * **
106771902 AAATCTTATCTTCCTGAAGTTGTAGTAGAGTAGATTGAAGC-CACAAACCTTATCTCCCTGAAGT
1 AAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAA-CTTACAAGTCTTATCTCCCTGAAGT
* *
106771966 TGCGGTAGAGCA-AGTTGAAG-T----TA-
65 TGCAGTGGAGCAGA-TTGAAGCTAAAATAC
* *
106771989 AAAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGGTTGAAGTTACAAGTCTTATCTCCCTGAAGT
1 AAA-TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAACTTACAAGTCTTATCTCCCTGAAGT
106772054 TGCAGTGGAGCAGATTGAAGCTACAAATCAC
65 TGCAGTGGAGCAGATTGAAGCTA-AAAT-AC
* * * * * *
106772085 AAACCTTATCTCCCTGAAGTTGTAGCGGAGTAGGTTGAACTTACAAGTCTTATCTCCCTGAAATT
1 AAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAACTTACAAGTCTTATCTCCCTGAAGTT
* * * * *
106772150 GCAATGGAGCAGACT-AA-ATATAGT--
66 GCAGTGGAGCAGATTGAAGCTAAAATAC
* ** *
106772174 AAATCTTATCTCCCTAAAGTTGCAGTGGAGCAGATTGAAGCTTCAAATCACAAACCTTATCTTCC
1 AAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAA-C-T----T-ACAAGTCTTATCTCCC
* *
106772239 TGAAGTTGCAGTGGAGTAGGTTGAAG-T----TAC
59 TGAAGTTGCAGTGGAGCAGATTGAAGCTAAAATAC
* * * ** *
106772269 AAGTCTTATCTCCCTGAAGTTGCAGTGGAGTAGACTGAAGGTAGGAA-TCTTATCTCCCTGAAGT
1 AAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAACTTA-CAAGTCTTATCTCCCTGAAGT
*
106772333 TGTAGTGGAGCAGATTGAAGCTACAAATCAC
65 TGCAGTGGAGCAGATTGAAGCTA-AAAT-AC
*
106772364 AAATCTTATTTCCCTGAAGTTGCAGTGGA
1 AAATCTTATCTCCCTGAAGTTGCAGTGGA
106772393 ACATATCAAA
Statistics
Matches: 324, Mismatches: 50, Indels: 52
0.76 0.12 0.12
Matches are distributed among these distances:
87 3 0.01
88 100 0.31
89 39 0.12
90 1 0.00
91 1 0.00
92 2 0.01
93 3 0.01
94 4 0.01
95 135 0.42
96 33 0.10
97 3 0.01
ACGTcount: A:0.30, C:0.19, G:0.22, T:0.29
Consensus pattern (93 bp):
AAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAACTTACAAGTCTTATCTCCCTGAAGTT
GCAGTGGAGCAGATTGAAGCTAAAATAC
Found at i:106772133 original size:139 final size:139
Alignment explanation
Indices: 106771943--106772392 Score: 652
Period size: 139 Copynumber: 3.2 Consensus size: 139
106771933 AGATTGAAGC
* * * * *
106771943 CACAAACCTTATCTCCCTGAAGTTGCGGTAGAGCAAGTTGAAGTTAAAAGTCTTATCTCCCTGAA
1 CACAAACCTTATCTCCCTGAAGTTGCAGTGGAGTAGGTTGAAGTTACAAGTCTTATCTCCCTGAA
**
106772008 GTTGCAGTGGAGCAGGTTGAAGTTA-CAAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGA
66 GTTGCAGTGGAGCAGACTGAAGTTAGCAA-TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGA
106772072 AGCTACAAAT
130 AGCTACAAAT
* * *
106772082 CACAAACCTTATCTCCCTGAAGTTGTAGCGGAGTAGGTTGAACTTACAAGTCTTATCTCCCTGAA
1 CACAAACCTTATCTCCCTGAAGTTGCAGTGGAGTAGGTTGAAGTTACAAGTCTTATCTCCCTGAA
* * * * *
106772147 ATTGCAATGGAGCAGACT-AAATATAGTAAATCTTATCTCCCTAAAGTTGCAGTGGAGCAGATTG
66 GTTGCAGTGGAGCAGACTGAAGT-TAG-CAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTG
*
106772211 AAGCTTCAAAT
129 AAGCTACAAAT
*
106772222 CACAAACCTTATCTTCCTGAAGTTGCAGTGGAGTAGGTTGAAGTTACAAGTCTTATCTCCCTGAA
1 CACAAACCTTATCTCCCTGAAGTTGCAGTGGAGTAGGTTGAAGTTACAAGTCTTATCTCCCTGAA
* * * *
106772287 GTTGCAGTGGAGTAGACTGAAGGTAGGAATCTTATCTCCCTGAAGTTGTAGTGGAGCAGATTGAA
66 GTTGCAGTGGAGCAGACTGAAGTTAGCAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAA
106772352 GCTACAAAT
131 GCTACAAAT
* *
106772361 CACAAATCTTATTTCCCTGAAGTTGCAGTGGA
1 CACAAACCTTATCTCCCTGAAGTTGCAGTGGA
106772393 ACATATCAAA
Statistics
Matches: 275, Mismatches: 32, Indels: 8
0.87 0.10 0.03
Matches are distributed among these distances:
138 3 0.01
139 146 0.53
140 122 0.44
141 4 0.01
ACGTcount: A:0.30, C:0.19, G:0.22, T:0.28
Consensus pattern (139 bp):
CACAAACCTTATCTCCCTGAAGTTGCAGTGGAGTAGGTTGAAGTTACAAGTCTTATCTCCCTGAA
GTTGCAGTGGAGCAGACTGAAGTTAGCAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAA
GCTACAAAT
Found at i:106772459 original size:139 final size:139
Alignment explanation
Indices: 106771943--106772476 Score: 411
Period size: 139 Copynumber: 3.8 Consensus size: 139
106771933 AGATTGAAGC
* * * * ** * *
106771943 CACAAACCTTATCTCCCTGAAGTTGCGGTAGAGCA-AGTTGAAGTTAAAAGTCTTATCTCCCTGA
1 CACAAACCTTATCTTCCTGAAGTTGCAGTGGAACAGA-TCAAAGCTACAAGTCTTATCTCCCTGA
* * * * ** **
106772007 AGTTGCAGTGGAGCAGGTTGAAGTTAC-AAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTG
65 AGCTACAGTAGAGTAGACTGAAGGCACGAA-TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTG
106772071 AAGCTACAAAT
129 AAGCTACAAAT
* * * ** * **
106772082 CACAAACCTTATCTCCCTGAAGTTGTAGCGGAGTAGGTTGAA-CTTACAAGTCTTATCTCCCTGA
1 CACAAACCTTATCTTCCTGAAGTTGCAGTGGAACAGATCAAAGC-TACAAGTCTTATCTCCCTGA
** * * * * * *** *
106772146 AATTGCAATGGAGCAGACTAAATATA-GTAAATCTTATCTCCCTAAAGTTGCAGTGGAGCAGATT
65 AGCTACAGTAGAGTAGACTGAAGGCACG--AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATT
*
106772210 GAAGCTTCAAAT
128 GAAGCTACAAAT
** * ** *
106772222 CACAAACCTTATCTTCCTGAAGTTGCAGTGGAGTAGGTTGAAGTTACAAGTCTTATCTCCCTGAA
1 CACAAACCTTATCTTCCTGAAGTTGCAGTGGAACAGATCAAAGCTACAAGTCTTATCTCCCTGAA
* * * * * *
106772287 GTTGCAGTGGAGTAGACTGAAGGTAGGAATCTTATCTCCCTGAAGTTGTAGTGGAGCAGATTGAA
66 GCTACAGTAGAGTAGACTGAAGGCACGAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAA
106772352 GCTACAAAT
131 GCTACAAAT
* * **
106772361 CACAAATCTTAT-TTCCCTGAAGTTGCAGTGGAACATATCAAAGCTACAAGTC-TAGTCTCGTTG
1 CACAAACCTTATCTT-CCTGAAGTTGCAGTGGAACAGATCAAAGCTACAAGTCTTA-TCTCCCTG
* * * *
106772424 AAGCTATAGTAGAGTGGAGC-GAA-GCACTAATTCTTATAC-CCCAGAAGTTGCAG
64 AAGCTACAGTAGAGTAGA-CTGAAGGCACGAA-TCTTAT-CTCCCTGAAGTTGCAG
106772477 GAGGATGGAA
Statistics
Matches: 333, Mismatches: 50, Indels: 24
0.82 0.12 0.06
Matches are distributed among these distances:
138 8 0.02
139 198 0.59
140 124 0.37
141 3 0.01
ACGTcount: A:0.31, C:0.19, G:0.22, T:0.28
Consensus pattern (139 bp):
CACAAACCTTATCTTCCTGAAGTTGCAGTGGAACAGATCAAAGCTACAAGTCTTATCTCCCTGAA
GCTACAGTAGAGTAGACTGAAGGCACGAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAA
GCTACAAAT
Found at i:106774039 original size:19 final size:20
Alignment explanation
Indices: 106773998--106774039 Score: 59
Period size: 19 Copynumber: 2.1 Consensus size: 20
106773988 TGGACTCTTT
* *
106773998 TTATTATTATTTATTTTAGA
1 TTATTATTATTTATCTTAAA
106774018 TTATT-TTATTTATCTTAAA
1 TTATTATTATTTATCTTAAA
106774037 TTA
1 TTA
106774040 CATATATTAA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
19 15 0.75
20 5 0.25
ACGTcount: A:0.31, C:0.02, G:0.02, T:0.64
Consensus pattern (20 bp):
TTATTATTATTTATCTTAAA
Found at i:106774134 original size:26 final size:26
Alignment explanation
Indices: 106774053--106774172 Score: 91
Period size: 26 Copynumber: 4.7 Consensus size: 26
106774043 ATATTAAACT
***
106774053 ATTTTAAATTGTTTTAGGTA-TATT-
1 ATTTTAAATTGTTTTATACATTATTC
* * * * *
106774077 ATTTTAAATTATTTCATATACTATAC
1 ATTTTAAATTGTTTTATACATTATTC
* * *
106774103 ACTTTAAATTGTTTTGTACATTATTT
1 ATTTTAAATTGTTTTATACATTATTC
**
106774129 ATTTTAAATTTGTTTTATGTATTATTC
1 ATTTTAAA-TTGTTTTATACATTATTC
*
106774156 ATTTTAATTTGTTTTAT
1 ATTTTAAATTGTTTTAT
106774173 TATTTACTTT
Statistics
Matches: 74, Mismatches: 19, Indels: 4
0.76 0.20 0.04
Matches are distributed among these distances:
24 16 0.22
25 3 0.04
26 34 0.46
27 21 0.28
ACGTcount: A:0.29, C:0.05, G:0.07, T:0.59
Consensus pattern (26 bp):
ATTTTAAATTGTTTTATACATTATTC
Found at i:106774167 original size:48 final size:48
Alignment explanation
Indices: 106774115--106774207 Score: 107
Period size: 48 Copynumber: 1.9 Consensus size: 48
106774105 TTTAAATTGT
* * * * *
106774115 TTTG-TACATTATTTATTTTAAATTTGTTTTATGTATTATTCATTTTAA
1 TTTGTTACATTATTTACTTTAAAATT-TTTCATATATTATTAATTTTAA
**
106774163 TTTGTTTTATTATTTACTTTAAAATTTTTCATATATTATTAATTT
1 TTTGTTACATTATTTACTTTAAAATTTTTCATATATTATTAATTT
106774208 CAAATTTTTA
Statistics
Matches: 37, Mismatches: 7, Indels: 2
0.80 0.15 0.04
Matches are distributed among these distances:
48 20 0.54
49 17 0.46
ACGTcount: A:0.28, C:0.04, G:0.04, T:0.63
Consensus pattern (48 bp):
TTTGTTACATTATTTACTTTAAAATTTTTCATATATTATTAATTTTAA
Found at i:106774182 original size:75 final size:76
Alignment explanation
Indices: 106774052--106774227 Score: 175
Period size: 75 Copynumber: 2.3 Consensus size: 76
106774042 TATATTAAAC
*
106774052 TATTTTAAA-TTGTTTTAGGTA-TATTATTTTAAATTATTTCATATACTATACACTTT-AAATTG
1 TATTTTAAATTTGTTTTATGTATTATTATTTTAAATTATTT-ATATA-TATACACTTTAAAATT-
**
106774114 TTTTGTACATTATT
63 TTTCATACATTATT
* * **
106774128 TATTTTAAATTTGTTTTATGTATTATTCATTTTAATTTGTTT-TAT-TATTTACTTTAAAATTTT
1 TATTTTAAATTTGTTTTATGTATTATT-ATTTTAAATTATTTATATATATACACTTTAAAATTTT
*
106774191 TCATATATTATT
65 TCATACATTATT
* * *
106774203 AATTTCAAATTT-TTATATGTATTAT
1 TATTTTAAATTTGTTTTATGTATTAT
106774228 CTTTTTTTTA
Statistics
Matches: 85, Mismatches: 11, Indels: 10
0.80 0.10 0.09
Matches are distributed among these distances:
74 12 0.14
75 29 0.34
76 14 0.16
77 14 0.16
78 4 0.05
79 12 0.14
ACGTcount: A:0.31, C:0.05, G:0.05, T:0.59
Consensus pattern (76 bp):
TATTTTAAATTTGTTTTATGTATTATTATTTTAAATTATTTATATATATACACTTTAAAATTTTT
CATACATTATT
Found at i:106774200 original size:26 final size:24
Alignment explanation
Indices: 106774141--106774220 Score: 67
Period size: 25 Copynumber: 3.3 Consensus size: 24
106774131 TTTAAATTTG
* * *
106774141 TTTTATGTATTATTCATTT-TAAT
1 TTTTATATATTATTAATTTAAAAT
*
106774164 TTGTT-T-TATTATTTACTTTAAAAT
1 TT-TTATATATTA-TTAATTTAAAAT
*
106774188 TTTTCATATATTATTAATTTCAAAT
1 TTTT-ATATATTATTAATTTAAAAT
106774213 TTTTATAT
1 TTTTATAT
106774221 GTATTATCTT
Statistics
Matches: 46, Mismatches: 5, Indels: 11
0.74 0.08 0.18
Matches are distributed among these distances:
22 5 0.11
23 10 0.22
24 11 0.24
25 15 0.33
26 5 0.11
ACGTcount: A:0.30, C:0.05, G:0.03, T:0.62
Consensus pattern (24 bp):
TTTTATATATTATTAATTTAAAAT
Found at i:106774215 original size:25 final size:25
Alignment explanation
Indices: 106774170--106774220 Score: 68
Period size: 25 Copynumber: 2.0 Consensus size: 25
106774160 TAATTTGTTT
*
106774170 TATTATTTACTTTAAAATTTTTCATA
1 TATTATTTAATTTAAAATTTTT-ATA
*
106774196 TATTA-TTAATTTCAAATTTTTATA
1 TATTATTTAATTTAAAATTTTTATA
106774220 T
1 T
106774221 GTATTATCTT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
24 4 0.17
25 14 0.61
26 5 0.22
ACGTcount: A:0.35, C:0.06, G:0.00, T:0.59
Consensus pattern (25 bp):
TATTATTTAATTTAAAATTTTTATA
Found at i:106774225 original size:26 final size:24
Alignment explanation
Indices: 106774122--106774227 Score: 65
Period size: 26 Copynumber: 4.2 Consensus size: 24
106774112 TGTTTTGTAC
* *
106774122 ATTATTTATTTTAAATTTGTTTTATGT
1 ATTA-TTAATTTAAATTT-TTATAT-T
* * *
106774149 ATTATTCATTTTAATTTGT-T-TT
1 ATTATTAATTTAAATTTTTATATT
*
106774171 ATTATTTACTTTAAAATTTTTCATA-T
1 ATTA-TTAATTT-AAATTTTT-ATATT
106774197 ATTATTAATTTCAAATTTTTATATGT
1 ATTATTAATTT-AAATTTTTATAT-T
106774223 ATTAT
1 ATTAT
106774228 CTTTTTTTTA
Statistics
Matches: 62, Mismatches: 10, Indels: 15
0.71 0.11 0.17
Matches are distributed among these distances:
22 5 0.08
23 6 0.10
24 10 0.16
25 15 0.24
26 22 0.35
27 4 0.06
ACGTcount: A:0.30, C:0.04, G:0.04, T:0.62
Consensus pattern (24 bp):
ATTATTAATTTAAATTTTTATATT
Found at i:106774535 original size:16 final size:16
Alignment explanation
Indices: 106774490--106774547 Score: 59
Period size: 15 Copynumber: 3.8 Consensus size: 16
106774480 TTTTTTCACA
*
106774490 TTATTTATTTTA-AAT
1 TTATTTATTTTACATT
* *
106774505 TCATTTATTAT-CATT
1 TTATTTATTTTACATT
106774520 TTAATTT-TTTTACATT
1 TT-ATTTATTTTACATT
106774536 TTATTTATTTTA
1 TTATTTATTTTA
106774548 AGTTGCTTTA
Statistics
Matches: 34, Mismatches: 5, Indels: 7
0.74 0.11 0.15
Matches are distributed among these distances:
15 19 0.56
16 15 0.44
ACGTcount: A:0.28, C:0.05, G:0.00, T:0.67
Consensus pattern (16 bp):
TTATTTATTTTACATT
Found at i:106780873 original size:41 final size:40
Alignment explanation
Indices: 106780797--106780882 Score: 100
Period size: 41 Copynumber: 2.1 Consensus size: 40
106780787 CAAATACATT
*
106780797 TAAAACAAATATTAAAACAAGAAACAAATAAAAAATGATAC
1 TAAAACAAATATTAAAACAAGAAACAAATAAAAAAT-ATAA
* * * * **
106780838 TAAAACAATTCTTAAAACAATACACAAATTGAAAATATAA
1 TAAAACAAATATTAAAACAAGAAACAAATAAAAAATATAA
106780878 TAAAA
1 TAAAA
106780883 AGTGATTATA
Statistics
Matches: 38, Mismatches: 7, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
40 8 0.21
41 30 0.79
ACGTcount: A:0.65, C:0.10, G:0.03, T:0.21
Consensus pattern (40 bp):
TAAAACAAATATTAAAACAAGAAACAAATAAAAAATATAA
Found at i:106780933 original size:28 final size:27
Alignment explanation
Indices: 106780869--106780933 Score: 67
Period size: 28 Copynumber: 2.3 Consensus size: 27
106780859 ACACAAATTG
* * *
106780869 AAAATATAATAAAAAGTGATTATATTA
1 AAAATAAAATAAAAAGTAAATATATTA
* *
106780896 AAATTGAAAATAAAATGTAAATATGATTA
1 AAAAT-AAAATAAAAAGTAAATAT-ATTA
106780925 AAAATAAAA
1 AAAATAAAA
106780934 AATATATATT
Statistics
Matches: 30, Mismatches: 6, Indels: 3
0.77 0.15 0.08
Matches are distributed among these distances:
27 4 0.13
28 18 0.60
29 8 0.27
ACGTcount: A:0.63, C:0.00, G:0.08, T:0.29
Consensus pattern (27 bp):
AAAATAAAATAAAAAGTAAATATATTA
Found at i:106782604 original size:7 final size:7
Alignment explanation
Indices: 106782592--106782641 Score: 73
Period size: 7 Copynumber: 6.9 Consensus size: 7
106782582 ATTAATACAA
*
106782592 TATATTG
1 TATATTT
106782599 TATATTT
1 TATATTT
106782606 TATATTT
1 TATATTT
106782613 TATATTT
1 TATATTT
106782620 TATATTTT
1 TATA-TTT
106782628 ATATATTT
1 -TATATTT
106782636 TATATT
1 TATATT
106782642 ATACAATAAT
Statistics
Matches: 40, Mismatches: 1, Indels: 4
0.89 0.02 0.09
Matches are distributed among these distances:
7 30 0.75
8 6 0.15
9 4 0.10
ACGTcount: A:0.30, C:0.00, G:0.02, T:0.68
Consensus pattern (7 bp):
TATATTT
Found at i:106782616 original size:21 final size:23
Alignment explanation
Indices: 106782592--106782641 Score: 77
Period size: 23 Copynumber: 2.3 Consensus size: 23
106782582 ATTAATACAA
106782592 TATATTGTATA-TTT-TATATTT
1 TATATTGTATATTTTATATATTT
*
106782613 TATATTTTATATTTTATATATTT
1 TATATTGTATATTTTATATATTT
106782636 TATATT
1 TATATT
106782642 ATACAATAAT
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
21 10 0.38
22 3 0.12
23 13 0.50
ACGTcount: A:0.30, C:0.00, G:0.02, T:0.68
Consensus pattern (23 bp):
TATATTGTATATTTTATATATTT
Found at i:106782634 original size:16 final size:15
Alignment explanation
Indices: 106782599--106782641 Score: 70
Period size: 16 Copynumber: 2.9 Consensus size: 15
106782589 CAATATATTG
106782599 TATATTTTATA-TTT
1 TATATTTTATATTTT
106782613 TATATTTTATATTTT
1 TATATTTTATATTTT
106782628 ATATATTTTATATT
1 -TATATTTTATATT
106782642 ATACAATAAT
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
14 11 0.41
15 3 0.11
16 13 0.48
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (15 bp):
TATATTTTATATTTT
Found at i:106784094 original size:25 final size:25
Alignment explanation
Indices: 106784066--106784113 Score: 71
Period size: 25 Copynumber: 1.9 Consensus size: 25
106784056 TAAATTACAT
*
106784066 TAAAAATATTTTTTTAA-AGAAAAGG
1 TAAAAATA-ATTTTTAACAGAAAAGG
106784091 TAAAAATAATTTTTAACAGAAAA
1 TAAAAATAATTTTTAACAGAAAA
106784114 TACGAAGTAT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 7 0.33
25 14 0.67
ACGTcount: A:0.56, C:0.02, G:0.08, T:0.33
Consensus pattern (25 bp):
TAAAAATAATTTTTAACAGAAAAGG
Found at i:106785245 original size:44 final size:44
Alignment explanation
Indices: 106785182--106785269 Score: 167
Period size: 44 Copynumber: 2.0 Consensus size: 44
106785172 AGCCTTTGAC
106785182 GGTCCCAACTCAATCAAAATCCTAGAACACATTTGGCAATTTAT
1 GGTCCCAACTCAATCAAAATCCTAGAACACATTTGGCAATTTAT
*
106785226 GGTCCCAACTCAATCAAAATCGTAGAACACATTTGGCAATTTAT
1 GGTCCCAACTCAATCAAAATCCTAGAACACATTTGGCAATTTAT
106785270 CTATCTACTT
Statistics
Matches: 43, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
44 43 1.00
ACGTcount: A:0.36, C:0.24, G:0.12, T:0.27
Consensus pattern (44 bp):
GGTCCCAACTCAATCAAAATCCTAGAACACATTTGGCAATTTAT
Found at i:106785737 original size:8 final size:8
Alignment explanation
Indices: 106785707--106785736 Score: 53
Period size: 8 Copynumber: 3.9 Consensus size: 8
106785697 TTAAAACATT
106785707 AAGTTTTA
1 AAGTTTTA
106785715 AAGTTTTA
1 AAGTTTTA
106785723 AAGTTTTA
1 AAGTTTTA
106785731 AA-TTTT
1 AAGTTTT
106785737 TTTATAAATT
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
7 4 0.18
8 18 0.82
ACGTcount: A:0.37, C:0.00, G:0.10, T:0.53
Consensus pattern (8 bp):
AAGTTTTA
Found at i:106789620 original size:44 final size:44
Alignment explanation
Indices: 106789516--106789676 Score: 130
Period size: 44 Copynumber: 3.7 Consensus size: 44
106789506 CTATTTTTAG
* * * * *
106789516 TCTGTTCCACTGCAACTTTAGGGAGATAAGA-C-TTGTAACTTCGA
1 TCTGCTCCACTGCAACTTCAGGGAGATAAGATCAATG--CCTTCAA
* * * * **
106789560 CCTGC-CCTACTACAACTTCAGGGGGATAAGGTCCGTGCCTTCAA
1 TCTGCTCC-ACTGCAACTTCAGGGAGATAAGATCAATGCCTTCAA
* * *
106789604 TCTGCTCCACTGCAACTTCAGGGAGATAAGATTAATGGCTTTAA
1 TCTGCTCCACTGCAACTTCAGGGAGATAAGATCAATGCCTTCAA
* *
106789648 TCTGTTCCACTGCAACTTCAAGGAGATAA
1 TCTGCTCCACTGCAACTTCAGGGAGATAA
106789677 TATTTGCCAT
Statistics
Matches: 93, Mismatches: 20, Indels: 8
0.77 0.17 0.07
Matches are distributed among these distances:
43 2 0.02
44 86 0.92
45 3 0.03
46 2 0.02
ACGTcount: A:0.27, C:0.24, G:0.20, T:0.28
Consensus pattern (44 bp):
TCTGCTCCACTGCAACTTCAGGGAGATAAGATCAATGCCTTCAA
Found at i:106789823 original size:45 final size:44
Alignment explanation
Indices: 106789747--106789959 Score: 167
Period size: 44 Copynumber: 4.8 Consensus size: 44
106789737 TCGTAGTTTT
* * * *
106789747 AATCTGTTCCACTACAACTTTAAGGAAATAAGATTCGTTAACTTC
1 AATCTGCTCCACTACAACTTTAGGGAGATAAGATTCG-TAACTTA
* *
106789792 AGTCTGCTCCAATACAACTTTAGGGAGATAAGACTT-GTAACTTA
1 AATCTGCTCCACTACAACTTTAGGGAGATAAGA-TTCGTAACTTA
* * * * ** *
106789836 AACCTACTCCACTGCAACTTTAGGGAGATAAGGTTCGTGGCTTT
1 AATCTGCTCCACTACAACTTTAGGGAGATAAGATTCGTAACTTA
* * * ** ** *
106789880 AATTTGCTCCACTGCAACTTCAGGGAGATAAGATTAATGGCTTT
1 AATCTGCTCCACTACAACTTTAGGGAGATAAGATTCGTAACTTA
* * * * *
106789924 AATCTACTCCACTGCAACTTCAGAGAGATAATATTC
1 AATCTGCTCCACTACAACTTTAGGGAGATAAGATTC
106789960 ACAATGATAG
Statistics
Matches: 139, Mismatches: 27, Indels: 5
0.81 0.16 0.03
Matches are distributed among these distances:
43 2 0.01
44 106 0.76
45 29 0.21
46 2 0.01
ACGTcount: A:0.32, C:0.21, G:0.17, T:0.31
Consensus pattern (44 bp):
AATCTGCTCCACTACAACTTTAGGGAGATAAGATTCGTAACTTA
Found at i:106789854 original size:44 final size:44
Alignment explanation
Indices: 106789806--106790419 Score: 220
Period size: 44 Copynumber: 13.5 Consensus size: 44
106789796 TGCTCCAATA
* ** * *
106789806 CAACTTTAGGGAGATAAGACTT-GTAACTTAAACCTACTCCACTG
1 CAACTTCAGGGAGATAAGA-TTAGTGGCTTTAATCTACTCCACTG
* * * * *
106789850 CAACTTTAGGGAGATAAGGTTCGTGGCTTTAATTTGCTCCACTG
1 CAACTTCAGGGAGATAAGATTAGTGGCTTTAATCTACTCCACTG
*
106789894 CAACTTCAGGGAGATAAGATTAATGGCTTTAATCTACTCCACTG
1 CAACTTCAGGGAGATAAGATTAGTGGCTTTAATCTACTCCACTG
* * * * * *
106789938 CAACTTCAGAGAGATAATATTCACAATGATAGATTTGATCTGAC-CTACTG
1 CAACTTCAGGGAGATAAGATT----A-G-TGGCTTTAATCT-ACTCCACTG
* * * **
106789988 CAACTTCAGAGG-CATAGGACTTGTAACCTGTAGCTTTAATCTGTTCCACTG
1 CAACTTCAG-GGAGATAAGA--T-T-A---GTGGCTTTAATCTACTCCACTG
* * * ** * *
106790039 CAACTTCAAGGAAATAAGATTCGCTAACTTCAATCTGCTCCACTG
1 CAACTTCAGGGAGATAAGATTAG-TGGCTTTAATCTACTCCACTG
* * * * *** * * *
106790084 TAACTTCAAGGAAATAAGACTAGCAACTTCAA-CATGCTCCATTG
1 CAACTTCAGGGAGATAAGATTAGTGGCTTTAATC-TACTCCACTG
* * ** *
106790128 CAACTTCAAGGAGATAAGATTGGTGGCTTCGATCTGCTCCACTG
1 CAACTTCAGGGAGATAAGATTAGTGGCTTTAATCTACTCCACTG
* * * * * **
106790172 CAACTTCAGGGAGATAAAATTCGTCATGGTAGATTTGATCCGAC-CTGCTG
1 CAACTTCAGGGAGATAAGA-T--T-A--GTGGCTTTAAT-CTACTCCACTG
* * * * * *
106790222 CAACTTC-TGAAGTATAGGATTTA-TAGCTTTAATCTGCTCTACTG
1 CAACTTCAGGGAG-ATAAGA-TTAGTGGCTTTAATCTACTCCACTG
* * ** ** *
106790266 CAACTTCAGAGAGATAAGATTCGCTATCTCCAGTCTGA-TCCACTG
1 CAACTTCAGGGAGATAAGATTAG-TGGCTTTAATCT-ACTCCACTG
* ** * * * *
106790311 CAACTTCAGGAAGATAAGACTT-GTAACTTCAACCTGCTCCACTA
1 CAACTTCAGGGAGATAAGA-TTAGTGGCTTTAATCTACTCCACTG
* ** *
106790355 CAACTTCAGGGAGATAAGGTTAGTGGCTTCGATCTGCTCCACTG
1 CAACTTCAGGGAGATAAGATTAGTGGCTTTAATCTACTCCACTG
106790399 CAACTTCAGGGAGATAAGATT
1 CAACTTCAGGGAGATAAGATT
106790420 CGCCATGGTA
Statistics
Matches: 439, Mismatches: 96, Indels: 70
0.73 0.16 0.12
Matches are distributed among these distances:
43 9 0.02
44 252 0.57
45 74 0.17
46 2 0.00
47 2 0.00
48 3 0.01
49 4 0.01
50 56 0.13
51 33 0.08
52 3 0.01
53 1 0.00
ACGTcount: A:0.30, C:0.22, G:0.19, T:0.29
Consensus pattern (44 bp):
CAACTTCAGGGAGATAAGATTAGTGGCTTTAATCTACTCCACTG
Found at i:106790028 original size:278 final size:278
Alignment explanation
Indices: 106789478--106790188 Score: 953
Period size: 278 Copynumber: 2.6 Consensus size: 278
106789468 CAATCTTCTT
* * * ** * *
106789478 CACTGCAACTTC-AGGAAGATAAGGTTTGCTATTTTTAGTCTGTTCCACTGCAACTTTAGGGAGA
1 CACTACAACTTCAAGGAA-ATAAGATTCGCTAACTTCAGTCTGCTCCACTGCAACTTTAGGGAGA
* * * * *
106789542 TAAGACTTGTAACTTCGACCTGC-CCTACTACAACTTCAGGGGGATAAGGTCCGTGCCTTCAATC
65 TAAGACTTGTAACTTCAACCTGCTCC-ACTGCAACTTCAGGGAGATAAGGTTCGTGGCTTCAATC
**
106789606 TGCTCCACTGCAACTTCAGGGAGATAAGATTAATGGCTTTAATCTGTTCCACTGCAACTTCAAGG
129 TGCTCCACTGCAACTTCAGGGAGATAAGATTAATGGCTTTAATCTACTCCACTGCAACTTCAAGG
** * * * *
106789671 AGATAATATTTGCCATGATAGATTTGATCCGAGCTACTGCAATTTCAGAGGTATAGGACTTGTAA
194 AGATAATATTCACAATGATAGATTTGATCCGACCTACTGCAACTTCAGAGGCATAGGACTTGTAA
*
106789736 CTCGTAGTTTTAATCTGTTC
259 CTCGTAGCTTTAATCTGTTC
* * * *
106789756 CACTACAACTTTAAGGAAATAAGATTCGTTAACTTCAGTCTGCTCCAATACAACTTTAGGGAGAT
1 CACTACAACTTCAAGGAAATAAGATTCGCTAACTTCAGTCTGCTCCACTGCAACTTTAGGGAGAT
* * * * *
106789821 AAGACTTGTAACTTAAACCTACTCCACTGCAACTTTAGGGAGATAAGGTTCGTGGCTTTAATTTG
66 AAGACTTGTAACTTCAACCTGCTCCACTGCAACTTCAGGGAGATAAGGTTCGTGGCTTCAATCTG
106789886 CTCCACTGCAACTTCAGGGAGATAAGATTAATGGCTTTAATCTACTCCACTGCAACTTC-AGAGA
131 CTCCACTGCAACTTCAGGGAGATAAGATTAATGGCTTTAATCTACTCCACTGCAACTTCAAG-GA
*
106789950 GATAATATTCACAATGATAGATTTGATCTGACCTACTGCAACTTCAGAGGCATAGGACTTGTAAC
195 GATAATATTCACAATGATAGATTTGATCCGACCTACTGCAACTTCAGAGGCATAGGACTTGTAAC
106790015 -CTGTAGCTTTAATCTGTTC
260 TC-GTAGCTTTAATCTGTTC
* * * * * *
106790034 CACTGCAACTTCAAGGAAATAAGATTCGCTAACTTCAATCTGCTCCACTGTAACTTCAAGGAAAT
1 CACTACAACTTCAAGGAAATAAGATTCGCTAACTTCAGTCTGCTCCACTGCAACTTTAGGGAGAT
* * * * * * * *
106790099 AAGACTAGCAACTTCAACATGCTCCATTGCAACTTCAAGGAGATAAGATTGGTGGCTTCGATCTG
66 AAGACTTGTAACTTCAACCTGCTCCACTGCAACTTCAGGGAGATAAGGTTCGTGGCTTCAATCTG
106790164 CTCCACTGCAACTTCAGGGAGATAA
131 CTCCACTGCAACTTCAGGGAGATAA
106790189 AATTCGTCAT
Statistics
Matches: 375, Mismatches: 54, Indels: 8
0.86 0.12 0.02
Matches are distributed among these distances:
277 3 0.01
278 365 0.97
279 7 0.02
ACGTcount: A:0.30, C:0.21, G:0.19, T:0.30
Consensus pattern (278 bp):
CACTACAACTTCAAGGAAATAAGATTCGCTAACTTCAGTCTGCTCCACTGCAACTTTAGGGAGAT
AAGACTTGTAACTTCAACCTGCTCCACTGCAACTTCAGGGAGATAAGGTTCGTGGCTTCAATCTG
CTCCACTGCAACTTCAGGGAGATAAGATTAATGGCTTTAATCTACTCCACTGCAACTTCAAGGAG
ATAATATTCACAATGATAGATTTGATCCGACCTACTGCAACTTCAGAGGCATAGGACTTGTAACT
CGTAGCTTTAATCTGTTC
Found at i:106790089 original size:45 final size:45
Alignment explanation
Indices: 106790025--106790422 Score: 221
Period size: 44 Copynumber: 8.8 Consensus size: 45
106790015 CTGTAGCTTT
*
106790025 AATCTGTTCCACTGCAACTTCAAGGAAATAAGATTCGCTAACTTC
1 AATCTGCTCCACTGCAACTTCAAGGAAATAAGATTCGCTAACTTC
* * *
106790070 AATCTGCTCCACTGTAACTTCAAGGAAATAAGACTAGC-AACTTC
1 AATCTGCTCCACTGCAACTTCAAGGAAATAAGATTCGCTAACTTC
* * * **
106790114 AA-CATGCTCCATTGCAACTTCAAGGAGATAAGATT-GGTGGCTTC
1 AATC-TGCTCCACTGCAACTTCAAGGAAATAAGATTCGCTAACTTC
* * * * *
106790158 GATCTGCTCCACTGCAACTTCAGGGAGATAAAATTCG-TCA-TGGT-
1 AATCTGCTCCACTGCAACTTCAAGGAAATAAGATTCGCTAACT--TC
* * * * ** * *
106790202 AGATTTGATCCGACCTGCTGCAACTTCTGAA-G-TATAGGATT-TATAGCTTT
1 A-ATCTGCTCC-A----CTGCAACTTC--AAGGAAATAAGATTCGCTAACTTC
* * * *
106790252 AATCTGCTCTACTGCAACTTC-AGAGAGATAAGATTCGCTATCTCC
1 AATCTGCTCCACTGCAACTTCAAG-GAAATAAGATTCGCTAACTTC
* *
106790297 AGTCTGATCCACTGCAACTTC-AGGAAGATAAGACTT-G-TAACTTC
1 AATCTGCTCCACTGCAACTTCAAGGAA-ATAAGA-TTCGCTAACTTC
* * * * * * **
106790341 AACCTGCTCCACTACAACTTCAGGGAGATAAGGTTAG-TGGCTTC
1 AATCTGCTCCACTGCAACTTCAAGGAAATAAGATTCGCTAACTTC
* * *
106790385 GATCTGCTCCACTGCAACTTCAGGGAGATAAGATTCGC
1 AATCTGCTCCACTGCAACTTCAAGGAAATAAGATTCGC
106790423 CATGGTAGAT
Statistics
Matches: 270, Mismatches: 57, Indels: 52
0.71 0.15 0.14
Matches are distributed among these distances:
41 1 0.00
43 6 0.02
44 153 0.57
45 78 0.29
46 3 0.01
48 1 0.00
49 7 0.03
50 18 0.07
51 2 0.01
52 1 0.00
ACGTcount: A:0.30, C:0.23, G:0.19, T:0.28
Consensus pattern (45 bp):
AATCTGCTCCACTGCAACTTCAAGGAAATAAGATTCGCTAACTTC
Found at i:106790351 original size:227 final size:227
Alignment explanation
Indices: 106789884--106790473 Score: 781
Period size: 227 Copynumber: 2.6 Consensus size: 227
106789874 GGCTTTAATT
* ** * *
106789884 TGCTCCACTGCAACTTCAGGGAGATAAGATTAATGGCTTTAATCTACTCCACTGCAACTTCAGAG
1 TGCTCCACTGCAACTTCAGGGAGATAAGATTAGTGGCTTCGATCTGCTCCACTGCAACTTCAGGG
* * * * *
106789949 AGATAATATTC-ACAATGATAGATTTGATCTGACCTACTGCAACTTCAGAGGCATAGGACTTGTA
66 AGATAAAATTCGAC-ATGGTAGATTTGATCCGACCTGCTGCAACTTCAGAGGTATAGGA-TT-T-
* * *
106790013 ACCTGTAGCTTTAATCTGTTCCACTGCAACTTCAAGGAAATAAGATTCGCTAACTTCAATCTGCT
127 A----TAGCTTTAATCTGCTCCACTGCAACTTCAAGGAAATAAGATTCGCTAACTCCAATCTGAT
*
106790078 CCACTGTAACTTCAAGGAAATAAGACTAGCAACTTCAACA
188 CCACTGCAACTTCAAGGAAATAAGACTAGCAACTTCAACA
* * *
106790118 TGCTCCATTGCAACTTCAAGGAGATAAGATTGGTGGCTTCGATCTGCTCCACTGCAACTTCAGGG
1 TGCTCCACTGCAACTTCAGGGAGATAAGATTAGTGGCTTCGATCTGCTCCACTGCAACTTCAGGG
* * *
106790183 AGATAAAATTCGTCATGGTAGATTTGATCCGACCTGCTGCAACTTCTGAAGTATAGGATTTATAG
66 AGATAAAATTCGACATGGTAGATTTGATCCGACCTGCTGCAACTTCAGAGGTATAGGATTTATAG
* * * *
106790248 CTTTAATCTGCTCTACTGCAACTTC-AGAGAGATAAGATTCGCTATCTCCAGTCTGATCCACTGC
131 CTTTAATCTGCTCCACTGCAACTTCAAG-GAAATAAGATTCGCTAACTCCAATCTGATCCACTGC
* * *
106790312 AACTTC-AGGAAGATAAGACTTGTAACTTCAACC
195 AACTTCAAGGAA-ATAAGACTAGCAACTTCAACA
* *
106790345 TGCTCCACTACAACTTCAGGGAGATAAGGTTAGTGGCTTCGATCTGCTCCACTGCAACTTCAGGG
1 TGCTCCACTGCAACTTCAGGGAGATAAGATTAGTGGCTTCGATCTGCTCCACTGCAACTTCAGGG
* * *
106790410 AGATAAGATTCGCCATGGTAGATTTGATCCAACCTGCTGCAACTTCAGAGGTATAGGATTTATA
66 AGATAAAATTCGACATGGTAGATTTGATCCGACCTGCTGCAACTTCAGAGGTATAGGATTTATA
106790474 ACTTCAATGA
Statistics
Matches: 316, Mismatches: 37, Indels: 13
0.86 0.10 0.04
Matches are distributed among these distances:
226 7 0.02
227 199 0.63
231 1 0.00
232 1 0.00
233 2 0.01
234 105 0.33
235 1 0.00
ACGTcount: A:0.30, C:0.22, G:0.19, T:0.29
Consensus pattern (227 bp):
TGCTCCACTGCAACTTCAGGGAGATAAGATTAGTGGCTTCGATCTGCTCCACTGCAACTTCAGGG
AGATAAAATTCGACATGGTAGATTTGATCCGACCTGCTGCAACTTCAGAGGTATAGGATTTATAG
CTTTAATCTGCTCCACTGCAACTTCAAGGAAATAAGATTCGCTAACTCCAATCTGATCCACTGCA
ACTTCAAGGAAATAAGACTAGCAACTTCAACA
Found at i:106791094 original size:72 final size:72
Alignment explanation
Indices: 106791000--106791143 Score: 288
Period size: 72 Copynumber: 2.0 Consensus size: 72
106790990 GTATCATTTT
106791000 TCTTTTCCGGAGAATGATCCCCTTTTACACTTGGGTTGACATTGCTCGTTATTTGTCGAGGTTGT
1 TCTTTTCCGGAGAATGATCCCCTTTTACACTTGGGTTGACATTGCTCGTTATTTGTCGAGGTTGT
106791065 ATCATCG
66 ATCATCG
106791072 TCTTTTCCGGAGAATGATCCCCTTTTACACTTGGGTTGACATTGCTCGTTATTTGTCGAGGTTGT
1 TCTTTTCCGGAGAATGATCCCCTTTTACACTTGGGTTGACATTGCTCGTTATTTGTCGAGGTTGT
106791137 ATCATCG
66 ATCATCG
106791144 ACAAAATGTC
Statistics
Matches: 72, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
72 72 1.00
ACGTcount: A:0.17, C:0.21, G:0.22, T:0.40
Consensus pattern (72 bp):
TCTTTTCCGGAGAATGATCCCCTTTTACACTTGGGTTGACATTGCTCGTTATTTGTCGAGGTTGT
ATCATCG
Found at i:106794304 original size:15 final size:14
Alignment explanation
Indices: 106794284--106794326 Score: 50
Period size: 15 Copynumber: 2.9 Consensus size: 14
106794274 CATGATTATC
106794284 ATTTTTATTATTGTT
1 ATTTTTATTATT-TT
*
106794299 ATTTTTATTCCTTTT
1 ATTTTTATT-ATTTT
106794314 ATTATTTATTATT
1 ATT-TTTATTATT
106794327 AATATATTAA
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
15 16 0.67
16 8 0.33
ACGTcount: A:0.21, C:0.05, G:0.02, T:0.72
Consensus pattern (14 bp):
ATTTTTATTATTTT
Found at i:106806410 original size:15 final size:15
Alignment explanation
Indices: 106806390--106806421 Score: 64
Period size: 15 Copynumber: 2.1 Consensus size: 15
106806380 ACACGTTGAG
106806390 GTATTTTCAATTTAT
1 GTATTTTCAATTTAT
106806405 GTATTTTCAATTTAT
1 GTATTTTCAATTTAT
106806420 GT
1 GT
106806422 TTCAAAAATC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.25, C:0.06, G:0.09, T:0.59
Consensus pattern (15 bp):
GTATTTTCAATTTAT
Found at i:106806438 original size:86 final size:87
Alignment explanation
Indices: 106806327--106806576 Score: 256
Period size: 86 Copynumber: 2.8 Consensus size: 87
106806317 TGATGTTTTT
* * * *
106806327 ATTTCTGTTTTCAGAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCACAATACACGTTGAGGT
1 ATTTCTATTTTCAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAATACACGTTGAGGT
*
106806392 ATTTTCAATTTATGTATTTTC-A
66 ATTTTCAATTTATAT-TTTTCAA
* * *** **
106806414 A-TT-TATGTTTCAAAAATCAACTCATATTGCAAGAAATGAGTTGAGCCTTGGTTTACGTGCTGA
1 ATTTCTAT-TTTCAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAATACACGT--TGA
*
106806477 GGTATTTTCAATTTCTATTTTTCAA
63 GGTATTTTCAATTTATATTTTTCAA
* * *
106806502 ATTTCTATTTTCAAAAAAATAAACTCATATTGCGA-AATGTGAGTTGAGCCTCAAGACACGCTGA
1 ATTTCTATTTTC--AAAAATCAACTCATATTGCGAGAA-GTGAGTTGAGCCTCAATACACGTTGA
*
106806566 GGTAATTTCAA
63 GGTATTTTCAA
106806577 ATTCTGTTTG
Statistics
Matches: 130, Mismatches: 24, Indels: 16
0.76 0.14 0.09
Matches are distributed among these distances:
85 2 0.02
86 43 0.33
87 6 0.05
88 21 0.16
89 19 0.15
90 5 0.04
91 34 0.26
ACGTcount: A:0.32, C:0.15, G:0.17, T:0.37
Consensus pattern (87 bp):
ATTTCTATTTTCAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAATACACGTTGAGGT
ATTTTCAATTTATATTTTTCAA
Found at i:106806506 original size:15 final size:14
Alignment explanation
Indices: 106806479--106806516 Score: 60
Period size: 14 Copynumber: 2.7 Consensus size: 14
106806469 CGTGCTGAGG
106806479 TATTTTC-AATTTC
1 TATTTTCAAATTTC
106806492 TATTTTTCAAATTTC
1 TA-TTTTCAAATTTC
106806507 TATTTTCAAA
1 TATTTTCAAA
106806517 AAAATAAACT
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
13 2 0.09
14 13 0.57
15 8 0.35
ACGTcount: A:0.29, C:0.13, G:0.00, T:0.58
Consensus pattern (14 bp):
TATTTTCAAATTTC
Found at i:106806545 original size:91 final size:87
Alignment explanation
Indices: 106806386--106806552 Score: 214
Period size: 91 Copynumber: 1.9 Consensus size: 87
106806376 CAATACACGT
* *
106806386 TGAGGTATTTTCAATTTATGTATTTTCAATTTATGTTTCAAAAATCAACTCATATTGCAAGAAAT
1 TGAGGTATTTTCAATTTATATATTTTCAATTTATGTTTCAAAAATAAACTCATATTGC-AGAAAT
106806451 GAGTTGAGCCTTGGTTTACGTGC
65 GAGTTGAGCCTTGGTTTACGTGC
*
106806474 TGAGGTATTTTCAATTTCTAT-TTTTCAAATTTCTAT-TTTCAAAAAAATAAACTCATATTGC-G
1 TGAGGTATTTTCAATTTATATATTTTC-AA-TT-TATGTTTC--AAAAATAAACTCATATTGCAG
106806536 AAATGTGAGTTGAGCCT
61 AAA--TGAGTTGAGCCT
106806553 CAAGACACGC
Statistics
Matches: 69, Mismatches: 3, Indels: 11
0.83 0.04 0.13
Matches are distributed among these distances:
87 5 0.07
88 21 0.30
89 10 0.14
90 3 0.04
91 30 0.43
ACGTcount: A:0.31, C:0.13, G:0.15, T:0.41
Consensus pattern (87 bp):
TGAGGTATTTTCAATTTATATATTTTCAATTTATGTTTCAAAAATAAACTCATATTGCAGAAATG
AGTTGAGCCTTGGTTTACGTGC
Found at i:106806777 original size:102 final size:102
Alignment explanation
Indices: 106806589--106806856 Score: 301
Period size: 90 Copynumber: 2.7 Consensus size: 102
106806579 TCTGTTTGCC
* * *
106806589 AAAAATCAACTCATATTGCGAGAAGTTAGTTGAGCCTCAGGGCACGCTGAGGAATTTTCAGTTCC
1 AAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGGACACGCTGAGGAATTTTCAATTCC
* *
106806654 TGCTTTTCAATTTCTACTTTTTAATTTCTGCTTTCAA
66 TGCTTTTCAATCTATACTTTTTAATTTCTGCTTTCAA
* * * * *
106806691 AAAAATGAACTCATATTGCGAGAGGTGAGTTGAGCCTTAGGATACGCTGAGGTATTTTCAATTCC
1 AAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGGACACGCTGAGGAATTTTCAATTCC
*
106806756 TGTTTTTTCAATC--TA-----T-A--T-T--TTTCAA
66 TG-CTTTTCAATCTATACTTTTTAATTTCTGCTTTCAA
* * * *
106806781 AAAAATCAACTCATACTGCGAGAAGTGAGTTGAGCCTTAGGGCATGCTGAGGAATTTTCAATTCC
1 AAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGGACACGCTGAGGAATTTTCAATTCC
106806846 TGCTTTTCAAT
66 TGCTTTTCAAT
106806857 TTCTGTTTTT
Statistics
Matches: 147, Mismatches: 18, Indels: 15
0.82 0.10 0.08
Matches are distributed among these distances:
89 8 0.05
90 66 0.45
92 1 0.01
93 1 0.01
95 1 0.01
96 1 0.01
101 2 0.01
102 59 0.40
103 8 0.05
ACGTcount: A:0.28, C:0.18, G:0.19, T:0.35
Consensus pattern (102 bp):
AAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGGACACGCTGAGGAATTTTCAATTCC
TGCTTTTCAATCTATACTTTTTAATTTCTGCTTTCAA
Found at i:106806809 original size:90 final size:90
Alignment explanation
Indices: 106806685--106806997 Score: 418
Period size: 90 Copynumber: 3.5 Consensus size: 90
106806675 TAATTTCTGC
*
106806685 TTTCAAAAAAATGAACTCATATTGCGAGAGGTGAGTTGAGCCTTAGGATACGCTGAGGTATTTTC
1 TTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTAGGATACGCTGAGGTATTTTC
*
106806750 AATTCCTGTTTTTTCAATCTATATT
66 AATTCCTGTTTTTTCAATTTATATT
* * ** * *
106806775 TTTCAAAAAAATCAACTCATACTGCGAGAAGTGAGTTGAGCCTTAGGGCATGCTGAGGAATTTTC
1 TTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTAGGATACGCTGAGGTATTTTC
* * *
106806840 AATTCCTG-CTTTTCAATTTCTGTT
66 AATTCCTGTTTTTTCAATTTATATT
*
106806864 TTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTT-GGCTCACATGCTGAGGTATT
1 TTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTAGGAT-AC--GCTGAGGTATT
* * * *
106806928 TTCAGTTTCAGTTTTTTTTAATTTATATT
63 TTCAATTCCTG-TTTTTTCAATTTATATT
106806957 TTTC--AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT
1 TTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT
106806998 CGGGTCACAT
Statistics
Matches: 194, Mismatches: 24, Indels: 9
0.85 0.11 0.04
Matches are distributed among these distances:
88 2 0.01
89 55 0.28
90 66 0.34
91 55 0.28
93 16 0.08
ACGTcount: A:0.28, C:0.16, G:0.19, T:0.37
Consensus pattern (90 bp):
TTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTAGGATACGCTGAGGTATTTTC
AATTCCTGTTTTTTCAATTTATATT
Found at i:106806854 original size:14 final size:14
Alignment explanation
Indices: 106806835--106806869 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 14
106806825 TGCTGAGGAA
106806835 TTTTCAATTCCTGC
1 TTTTCAATTCCTGC
* *
106806849 TTTTCAATTTCTGT
1 TTTTCAATTCCTGC
106806863 TTTTCAA
1 TTTTCAA
106806870 AAAAATCAAC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.17, C:0.20, G:0.06, T:0.57
Consensus pattern (14 bp):
TTTTCAATTCCTGC
Found at i:106806899 original size:89 final size:89
Alignment explanation
Indices: 106806685--106807023 Score: 407
Period size: 91 Copynumber: 3.8 Consensus size: 89
106806675 TAATTTCTGC
* * *
106806685 TTTCAAAAAAATGAACTCATATTGCGAGAGGTGAGTTGAGCCTTAGGATACGCTGAGGTATTTTC
1 TTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTAGGACATGCTGAGGTATTTTC
* *
106806750 AATTCCTGTTTTTTCAATCTATATT
66 AATTCCTG-CTTTTCAATTTATATT
* * * *
106806775 TTTCAAAAAAATCAACTCATACTGCGAGAAGTGAGTTGAGCCTTAGGGCATGCTGAGGAATTTTC
1 TTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTAGGACATGCTGAGGTATTTTC
* *
106806840 AATTCCTGCTTTTCAATTTCTGTT
66 AATTCCTGCTTTTCAATTTATATT
106806864 TTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTT-GGCTCACATGCTGAGGTATT
1 TTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTAGG---ACATGCTGAGGTATT
* * ** *
106806928 TTCAGTTTCAGTTTTTTTTAATTTATATT
63 TTCA-ATTC-CTGCTTTTCAATTTATATT
**
106806957 TTTC--AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACATG-TCGAGGTATT
1 TTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTAGG--ACATGCT-GAGGTATT
106807019 TTCAA
63 TTCAA
106807024 AATCTGCTTT
Statistics
Matches: 218, Mismatches: 24, Indels: 14
0.85 0.09 0.05
Matches are distributed among these distances:
88 2 0.01
89 54 0.25
90 67 0.31
91 73 0.33
92 5 0.02
93 17 0.08
ACGTcount: A:0.28, C:0.16, G:0.20, T:0.36
Consensus pattern (89 bp):
TTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTAGGACATGCTGAGGTATTTTC
AATTCCTGCTTTTCAATTTATATT
Found at i:106807473 original size:44 final size:44
Alignment explanation
Indices: 106807372--106807478 Score: 119
Period size: 44 Copynumber: 2.4 Consensus size: 44
106807362 GGAGATAGAA
* *
106807372 GAGTAGATTGAAGCTATAAATCTTATCTTTCTGAAGTTACAGTG
1 GAGTAGATTGAAGCTACAAATCTTATCTCTCTGAAGTTACAGTG
* * * * *
106807416 AAGCAGATCGAAGCCACAAATCTCATATC-CT-TGAAGTTACATTG
1 GAGTAGATTGAAGCTACAAATCT--TATCTCTCTGAAGTTACAGTG
106807460 GAGTAGATTGAAGCTACAA
1 GAGTAGATTGAAGCTACAA
106807479 GGCATATATC
Statistics
Matches: 50, Mismatches: 11, Indels: 4
0.77 0.17 0.06
Matches are distributed among these distances:
44 45 0.90
45 1 0.02
46 4 0.08
ACGTcount: A:0.36, C:0.16, G:0.20, T:0.29
Consensus pattern (44 bp):
GAGTAGATTGAAGCTACAAATCTTATCTCTCTGAAGTTACAGTG
Found at i:106807965 original size:23 final size:23
Alignment explanation
Indices: 106807930--106807973 Score: 54
Period size: 23 Copynumber: 1.9 Consensus size: 23
106807920 AGTTGCATCT
*
106807930 GCAAGAATTAAAAGAAA-AGGACA
1 GCAAGAA-TAAAAAAAAGAGGACA
*
106807953 GCAAGCATAAAAAAAAGAGGA
1 GCAAGAATAAAAAAAAGAGGA
106807974 GCATTTTAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
22 8 0.44
23 10 0.56
ACGTcount: A:0.61, C:0.09, G:0.23, T:0.07
Consensus pattern (23 bp):
GCAAGAATAAAAAAAAGAGGACA
Found at i:106808930 original size:15 final size:14
Alignment explanation
Indices: 106808910--106808952 Score: 50
Period size: 15 Copynumber: 2.9 Consensus size: 14
106808900 CATGATTATC
106808910 ATTTTTATTATTGTT
1 ATTTTTATTATT-TT
*
106808925 ATTTTTATTCCTTTT
1 ATTTTTATT-ATTTT
106808940 ATTATTTATTATT
1 ATT-TTTATTATT
106808953 AATATATTAA
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
15 16 0.67
16 8 0.33
ACGTcount: A:0.21, C:0.05, G:0.02, T:0.72
Consensus pattern (14 bp):
ATTTTTATTATTTT
Found at i:106814767 original size:27 final size:27
Alignment explanation
Indices: 106814694--106814767 Score: 73
Period size: 27 Copynumber: 2.9 Consensus size: 27
106814684 TATTAAAATG
* **
106814694 GTTTGAAATAAATAACGTAT-AAATTA
1 GTTTGAAATAAATAATGTATAAAAGAA
* * *
106814720 -TCT-AAATAAATAATATGTAAAAGAA
1 GTTTGAAATAAATAATGTATAAAAGAA
106814745 GTTTGAAATAAATAATGTATAAA
1 GTTTGAAATAAATAATGTATAAA
106814768 CCGTTCAAAT
Statistics
Matches: 36, Mismatches: 9, Indels: 5
0.72 0.18 0.10
Matches are distributed among these distances:
24 12 0.33
25 6 0.17
26 2 0.06
27 16 0.44
ACGTcount: A:0.54, C:0.03, G:0.11, T:0.32
Consensus pattern (27 bp):
GTTTGAAATAAATAATGTATAAAAGAA
Found at i:106819918 original size:6 final size:7
Alignment explanation
Indices: 106819902--106819926 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
106819892 ATTTATTGGG
106819902 TTTTTAT
1 TTTTTAT
106819909 TTTTTAT
1 TTTTTAT
106819916 TTTTTAT
1 TTTTTAT
106819923 TTTT
1 TTTT
106819927 GGTTTGTTTG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.12, C:0.00, G:0.00, T:0.88
Consensus pattern (7 bp):
TTTTTAT
Found at i:106828581 original size:274 final size:274
Alignment explanation
Indices: 106828092--106828645 Score: 1072
Period size: 274 Copynumber: 2.0 Consensus size: 274
106828082 GGTTAAGCAT
106828092 TTTCATGCTTAGTAAGCTCGAATAACCGGAAAGTAAACTTACCGAGTAATTAGCATACATCCATA
1 TTTCATGCTTAGTAAGCTCGAATAACCGGAAAGTAAACTTACCGAGTAATTAGCATACATCCATA
106828157 CTTAAATCATGAAATTATCCATTATGAAATAATTTCCTATCATTTGCACTTAATCAATGAGTTAG
66 CTTAAATCATGAAATTATCCATTATGAAATAATTTCCTATCATTTGCACTTAATCAATGAGTTAG
106828222 TCACATAATCATGTTTCAAGTAATTTAACTAGATGAGCTCATCATTCAACATTTCATTCATATAT
131 TCACATAATCATGTTTCAAGTAATTTAACTAGATGAGCTCATCATTCAACATTTCATTCATATAT
* *
106828287 GTATACCATGTTAATCTCGTTGAATTTCTAGAAAATCTTGATGGAATACCCATTATCCGCCAATT
196 GTATACCACGTTAATCTCGTTGAATTTCTAGAAAATCTCGATGGAATACCCATTATCCGCCAATT
106828352 CATACGAACGACCA
261 CATACGAACGACCA
*
106828366 TTTCATGCTTAGTAAGCTCGAATAACTGGAAAGTAAACTTACCGAGTAATTAGCATACATCCATA
1 TTTCATGCTTAGTAAGCTCGAATAACCGGAAAGTAAACTTACCGAGTAATTAGCATACATCCATA
106828431 CTTAAATCATGAAATTATCCATTATGAAATAATTTCCTATCATTTGCACTTAATCAATGAGTTAG
66 CTTAAATCATGAAATTATCCATTATGAAATAATTTCCTATCATTTGCACTTAATCAATGAGTTAG
106828496 TCACATAATCATGTTTCAAGTAATTTAACTAGATGAGCTCATCATTCAACATTTCATTCATATAT
131 TCACATAATCATGTTTCAAGTAATTTAACTAGATGAGCTCATCATTCAACATTTCATTCATATAT
*
106828561 GTATACCACGTTAATCTCGTTGAGTTTCTAGAAAATCTCGATGGAATACCCATTATCCGCCAATT
196 GTATACCACGTTAATCTCGTTGAATTTCTAGAAAATCTCGATGGAATACCCATTATCCGCCAATT
106828626 CATACGAACGACCA
261 CATACGAACGACCA
106828640 TTTCAT
1 TTTCAT
106828646 ATATACACTC
Statistics
Matches: 276, Mismatches: 4, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
274 276 1.00
ACGTcount: A:0.35, C:0.19, G:0.12, T:0.34
Consensus pattern (274 bp):
TTTCATGCTTAGTAAGCTCGAATAACCGGAAAGTAAACTTACCGAGTAATTAGCATACATCCATA
CTTAAATCATGAAATTATCCATTATGAAATAATTTCCTATCATTTGCACTTAATCAATGAGTTAG
TCACATAATCATGTTTCAAGTAATTTAACTAGATGAGCTCATCATTCAACATTTCATTCATATAT
GTATACCACGTTAATCTCGTTGAATTTCTAGAAAATCTCGATGGAATACCCATTATCCGCCAATT
CATACGAACGACCA
Found at i:106843276 original size:27 final size:27
Alignment explanation
Indices: 106843221--106843362 Score: 171
Period size: 27 Copynumber: 5.2 Consensus size: 27
106843211 GTGACGAAGT
* *
106843221 CACCAGATACATATAATTGTGGCATAGC
1 CACCAGA-ACAGATAATCGTGGCATAGC
*
106843249 CACCAGAACAGAT-ATACGTGGCAGAGC
1 CACCAGAACAGATAAT-CGTGGCATAGC
*
106843276 CACCAGATCAGATAATCGTGGCATAGC
1 CACCAGAACAGATAATCGTGGCATAGC
* *
106843303 CACCAAAACAGATATAT-GTGGCAGAGC
1 CACCAGAACAGATA-ATCGTGGCATAGC
* *
106843330 CACCAGATCAGATAATTGTGGCATAGC
1 CACCAGAACAGATAATCGTGGCATAGC
106843357 CACCAG
1 CACCAG
106843363 GACGCTTCCT
Statistics
Matches: 99, Mismatches: 11, Indels: 9
0.83 0.09 0.08
Matches are distributed among these distances:
26 4 0.04
27 84 0.85
28 11 0.11
ACGTcount: A:0.36, C:0.25, G:0.22, T:0.18
Consensus pattern (27 bp):
CACCAGAACAGATAATCGTGGCATAGC
Found at i:106843291 original size:54 final size:54
Alignment explanation
Indices: 106843221--106843362 Score: 239
Period size: 54 Copynumber: 2.6 Consensus size: 54
106843211 GTGACGAAGT
*
106843221 CACCAGATACATATAATTGTGGCATAGCCACCAGAACAGATATACGTGGCAGAGC
1 CACCAGAT-CAGATAATTGTGGCATAGCCACCAGAACAGATATACGTGGCAGAGC
* * *
106843276 CACCAGATCAGATAATCGTGGCATAGCCACCAAAACAGATATATGTGGCAGAGC
1 CACCAGATCAGATAATTGTGGCATAGCCACCAGAACAGATATACGTGGCAGAGC
106843330 CACCAGATCAGATAATTGTGGCATAGCCACCAG
1 CACCAGATCAGATAATTGTGGCATAGCCACCAG
106843363 GACGCTTCCT
Statistics
Matches: 81, Mismatches: 6, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
54 73 0.90
55 8 0.10
ACGTcount: A:0.36, C:0.25, G:0.22, T:0.18
Consensus pattern (54 bp):
CACCAGATCAGATAATTGTGGCATAGCCACCAGAACAGATATACGTGGCAGAGC
Found at i:106843529 original size:28 final size:26
Alignment explanation
Indices: 106843468--106843541 Score: 76
Period size: 26 Copynumber: 2.8 Consensus size: 26
106843458 AAATTAACCC
* * * *
106843468 TAGGGGTATATCGGTAATTTTGCACC
1 TAGGGGTATAACAGTAATTTTCCACA
106843494 TAGGGGTATAACAGTAATTTTCCATACA
1 TAGGGGTATAACAGTAATTTTCC--ACA
* *
106843522 TAGGGGTATTATAGTAATTT
1 TAGGGGTATAACAGTAATTT
106843542 AGCTACTATT
Statistics
Matches: 40, Mismatches: 6, Indels: 2
0.83 0.12 0.04
Matches are distributed among these distances:
26 20 0.50
28 20 0.50
ACGTcount: A:0.30, C:0.11, G:0.23, T:0.36
Consensus pattern (26 bp):
TAGGGGTATAACAGTAATTTTCCACA
Found at i:106844366 original size:24 final size:24
Alignment explanation
Indices: 106844324--106844370 Score: 67
Period size: 24 Copynumber: 2.0 Consensus size: 24
106844314 CTGTCAGGAG
***
106844324 AGGATTTAGGAGTTGATAAGGGAT
1 AGGATTTAGGAGCAAATAAGGGAT
106844348 AGGATTTAGGAGCAAATAAGGGA
1 AGGATTTAGGAGCAAATAAGGGA
106844371 GGAAATCTAG
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.38, C:0.02, G:0.36, T:0.23
Consensus pattern (24 bp):
AGGATTTAGGAGCAAATAAGGGAT
Found at i:106845823 original size:27 final size:26
Alignment explanation
Indices: 106845783--106845894 Score: 125
Period size: 27 Copynumber: 4.2 Consensus size: 26
106845773 AGGAAGAGTC
*
106845783 CTGGTGGCTATGCCACAATTATCTGAT
1 CTGGTGGCTCTGCCAC-ATTATCTGAT
*
106845810 CTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTCTGCCACAT-TATCTGAT
* *
106845837 CTGGTGGTTCTGCCACGATTATCTATAT
1 CTGGTGGCTCTGCCAC-ATTATCT-GAT
* * *
106845865 CTGGTGACTCTGTCACATTATCTGTT
1 CTGGTGGCTCTGCCACATTATCTGAT
106845891 CTGG
1 CTGG
106845895 CAGCCATGCT
Statistics
Matches: 72, Mismatches: 10, Indels: 7
0.81 0.11 0.08
Matches are distributed among these distances:
26 7 0.10
27 49 0.68
28 16 0.22
ACGTcount: A:0.17, C:0.23, G:0.22, T:0.38
Consensus pattern (26 bp):
CTGGTGGCTCTGCCACATTATCTGAT
Found at i:106845887 original size:54 final size:54
Alignment explanation
Indices: 106845783--106845894 Score: 154
Period size: 54 Copynumber: 2.1 Consensus size: 54
106845773 AGGAAGAGTC
*
106845783 CTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTATGCCACAATTATCTGATCTGGTGACTCTGCCACATATATCTGTT
* * * * *
106845837 CTGGTGGTTCTGCCACGATTATCTATATCTGGTGACTCTGTCACAT-TATCTGTT
1 CTGGTGGCTATGCCACAATTATCT-GATCTGGTGACTCTGCCACATATATCTGTT
106845891 CTGG
1 CTGG
106845895 CAGCCATGCT
Statistics
Matches: 51, Mismatches: 6, Indels: 2
0.86 0.10 0.03
Matches are distributed among these distances:
54 33 0.65
55 18 0.35
ACGTcount: A:0.17, C:0.23, G:0.22, T:0.38
Consensus pattern (54 bp):
CTGGTGGCTATGCCACAATTATCTGATCTGGTGACTCTGCCACATATATCTGTT
Found at i:106851741 original size:70 final size:70
Alignment explanation
Indices: 106851628--106851767 Score: 280
Period size: 70 Copynumber: 2.0 Consensus size: 70
106851618 TGGATGCTAG
106851628 GGAGAGCTGAGGTTCAAGTCACAATGACAACATATTAAGGGAATTATTATTTTTATGTTCAGAAA
1 GGAGAGCTGAGGTTCAAGTCACAATGACAACATATTAAGGGAATTATTATTTTTATGTTCAGAAA
106851693 AGGTA
66 AGGTA
106851698 GGAGAGCTGAGGTTCAAGTCACAATGACAACATATTAAGGGAATTATTATTTTTATGTTCAGAAA
1 GGAGAGCTGAGGTTCAAGTCACAATGACAACATATTAAGGGAATTATTATTTTTATGTTCAGAAA
106851763 AGGTA
66 AGGTA
106851768 AGCAGTGGAA
Statistics
Matches: 70, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
70 70 1.00
ACGTcount: A:0.37, C:0.10, G:0.23, T:0.30
Consensus pattern (70 bp):
GGAGAGCTGAGGTTCAAGTCACAATGACAACATATTAAGGGAATTATTATTTTTATGTTCAGAAA
AGGTA
Found at i:106851833 original size:24 final size:24
Alignment explanation
Indices: 106851801--106851871 Score: 124
Period size: 24 Copynumber: 3.0 Consensus size: 24
106851791 CTGTCAAGAG
106851801 AGGATTTAGGAGTTGATAAGGGAT
1 AGGATTTAGGAGTTGATAAGGGAT
106851825 AGGATTTAGGAGTTGATAAGGGAT
1 AGGATTTAGGAGTTGATAAGGGAT
**
106851849 AGGATTTAGGAGCAGATAAGGGA
1 AGGATTTAGGAGTTGATAAGGGA
106851872 GTAAATCTAG
Statistics
Matches: 45, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 45 1.00
ACGTcount: A:0.35, C:0.01, G:0.38, T:0.25
Consensus pattern (24 bp):
AGGATTTAGGAGTTGATAAGGGAT
Done.