Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A06
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 115140250
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2234201 characters in sequence are not A, C, G, or T
File 32 of 345
Found at i:9072637 original size:24 final size:24
Alignment explanation
Indices: 9072591--9072638 Score: 62
Period size: 24 Copynumber: 2.0 Consensus size: 24
9072581 AATTACTAAC
* *
9072591 CTTTTTTTTTCTTCTTCTTCTTCT
1 CTTTTTTTTTCCTCTTCTGCTTCT
9072615 CTTTTTTTTTCACTCTT-TGCTTCT
1 CTTTTTTTTTC-CTCTTCTGCTTCT
9072639 TCCTGGACGC
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
24 17 0.81
25 4 0.19
ACGTcount: A:0.02, C:0.25, G:0.02, T:0.71
Consensus pattern (24 bp):
CTTTTTTTTTCCTCTTCTGCTTCT
Found at i:9072906 original size:14 final size:14
Alignment explanation
Indices: 9072887--9072919 Score: 57
Period size: 14 Copynumber: 2.4 Consensus size: 14
9072877 TAATAATATT
9072887 ATTATTATTAAAAA
1 ATTATTATTAAAAA
*
9072901 ATTATTATTAAAAT
1 ATTATTATTAAAAA
9072915 ATTAT
1 ATTAT
9072920 GTCGCTCCTT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (14 bp):
ATTATTATTAAAAA
Found at i:9083559 original size:21 final size:21
Alignment explanation
Indices: 9083533--9083617 Score: 80
Period size: 21 Copynumber: 4.0 Consensus size: 21
9083523 TGATCAGTAT
*
9083533 ACGACACATAAAGTGCCTAAA
1 ACGACACACAAAGTGCCTAAA
* * * *
9083554 ACGACACACGAGGTGCCTGAT
1 ACGACACACAAAGTGCCTAAA
* *
9083575 ACGACACACGAGGTGCCTGAAA
1 ACGACACACAAAGTGCCT-AAA
*
9083597 TACGACACATAAAGTGCCTAA
1 -ACGACACACAAAGTGCCTAA
9083618 TTCGTAAAGC
Statistics
Matches: 52, Mismatches: 10, Indels: 3
0.80 0.15 0.05
Matches are distributed among these distances:
21 34 0.65
22 3 0.06
23 15 0.29
ACGTcount: A:0.39, C:0.26, G:0.21, T:0.14
Consensus pattern (21 bp):
ACGACACACAAAGTGCCTAAA
Found at i:9083583 original size:23 final size:22
Alignment explanation
Indices: 9083531--9083605 Score: 91
Period size: 21 Copynumber: 3.5 Consensus size: 22
9083521 CCTGATCAGT
** *
9083531 ATACGACACATAAAGTGCCT-A
1 ATACGACACACGAGGTGCCTGA
*
9083552 AAACGACACACGAGGTGCCTG-
1 ATACGACACACGAGGTGCCTGA
9083573 ATACGACACACGAGGTGCCTGAA
1 ATACGACACACGAGGTGCCTG-A
9083596 ATACGACACA
1 ATACGACACA
9083606 TAAAGTGCCT
Statistics
Matches: 46, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
21 36 0.78
23 10 0.22
ACGTcount: A:0.39, C:0.27, G:0.21, T:0.13
Consensus pattern (22 bp):
ATACGACACACGAGGTGCCTGA
Found at i:9084016 original size:15 final size:15
Alignment explanation
Indices: 9083988--9084045 Score: 80
Period size: 15 Copynumber: 3.8 Consensus size: 15
9083978 TCATATATAT
*
9083988 TATATAATTTAATCAA
1 TATA-AATTCAATCAA
9084004 TATAAATTCAATCAA
1 TATAAATTCAATCAA
* *
9084019 AATAATTTCAATCAA
1 TATAAATTCAATCAA
9084034 TATAAATTCAAT
1 TATAAATTCAAT
9084046 AAAACAGATA
Statistics
Matches: 37, Mismatches: 5, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
15 33 0.89
16 4 0.11
ACGTcount: A:0.52, C:0.10, G:0.00, T:0.38
Consensus pattern (15 bp):
TATAAATTCAATCAA
Found at i:9084034 original size:30 final size:28
Alignment explanation
Indices: 9083991--9084049 Score: 100
Period size: 30 Copynumber: 2.0 Consensus size: 28
9083981 TATATATTAT
9083991 ATAATTTAATCAATATAAATTCAATCAAA
1 ATAATTTAATCAATATAAATTCAAT-AAA
9084020 ATAATTTCAATCAATATAAATTCAATAAA
1 ATAATTT-AATCAATATAAATTCAATAAA
9084049 A
1 A
9084050 CAGATATTCA
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
29 11 0.38
30 18 0.62
ACGTcount: A:0.56, C:0.10, G:0.00, T:0.34
Consensus pattern (28 bp):
ATAATTTAATCAATATAAATTCAATAAA
Found at i:9098758 original size:38 final size:37
Alignment explanation
Indices: 9098670--9098763 Score: 93
Period size: 38 Copynumber: 2.5 Consensus size: 37
9098660 TTTATTTTAA
* *
9098670 ATATTTTTTTATATTATTTATTTTTATAAATATAGTT
1 ATATTTTATTATATTATTTATTTTTATAAATATAATT
* * **
9098707 ATCATTATGTTATATTATTGTATATTTTATCTATA-AATT
1 AT-ATTTTATTATATTATT-TAT-TTTTATAAATATAATT
9098746 ATATTTTATTATA-TATTT
1 ATATTTTATTATATTATTT
9098764 CATTCTATAT
Statistics
Matches: 47, Mismatches: 7, Indels: 7
0.77 0.11 0.11
Matches are distributed among these distances:
36 1 0.02
37 6 0.13
38 23 0.49
39 8 0.17
40 9 0.19
ACGTcount: A:0.33, C:0.02, G:0.03, T:0.62
Consensus pattern (37 bp):
ATATTTTATTATATTATTTATTTTTATAAATATAATT
Found at i:9102688 original size:16 final size:14
Alignment explanation
Indices: 9102656--9102708 Score: 65
Period size: 14 Copynumber: 3.7 Consensus size: 14
9102646 ATCGATACCT
9102656 TTTGCATTCATGCA
1 TTTGCATTCATGCA
9102670 TTTGCATCTCATAGCA
1 TTTGCAT-TCAT-GCA
9102686 TTT-CATTGCAT-CA
1 TTTGCATT-CATGCA
9102699 TTTGCATTCA
1 TTTGCATTCA
9102709 AAATTATAGA
Statistics
Matches: 35, Mismatches: 0, Indels: 9
0.80 0.00 0.20
Matches are distributed among these distances:
13 7 0.20
14 12 0.34
15 10 0.29
16 6 0.17
ACGTcount: A:0.23, C:0.23, G:0.11, T:0.43
Consensus pattern (14 bp):
TTTGCATTCATGCA
Found at i:9104605 original size:16 final size:17
Alignment explanation
Indices: 9104573--9104605 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
9104563 TTTATAAGTA
*
9104573 TATATCAATCGTTTCAT
1 TATATCAATCATTTCAT
9104590 TATATCAAT-ATTTCAT
1 TATATCAATCATTTCAT
9104606 GTTTCATCAT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 6 0.40
17 9 0.60
ACGTcount: A:0.33, C:0.15, G:0.03, T:0.48
Consensus pattern (17 bp):
TATATCAATCATTTCAT
Found at i:9105048 original size:92 final size:92
Alignment explanation
Indices: 9104891--9105163 Score: 411
Period size: 92 Copynumber: 3.0 Consensus size: 92
9104881 TTTGACATGA
* * * *
9104891 TGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTCTGTCATGTTGCCATGGTATCTTTCAAC
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCCTGTCATGTTGCCATGGTATCTTTCAAC
* *
9104956 CATGGTCTTATTCTTTTCATGTCACGT
66 CATGGTCTTATTCGTTTCATATCACGT
* *
9104983 TGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCCCGTCATGTTGCCATGGTATCTTTCAAC
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCCTGTCATGTTGCCATGGTATCTTTCAAC
9105048 CATGGTCTTATTCGTTTCATATCACGT
66 CATGGTCTTATTCGTTTCATATCACGT
* * * *
9105075 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCATGGTATCTTTCAAC
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCCTGTCATGTTGCCATGGTATCTTTCAAC
** *
9105140 CATGGTCTTACACATTTCATATCA
66 CATGGTCTTATTCGTTTCATATCA
9105164 GAGAGCACAC
Statistics
Matches: 164, Mismatches: 17, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
92 164 1.00
ACGTcount: A:0.20, C:0.24, G:0.15, T:0.41
Consensus pattern (92 bp):
TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCCTGTCATGTTGCCATGGTATCTTTCAAC
CATGGTCTTATTCGTTTCATATCACGT
Found at i:9105164 original size:46 final size:46
Alignment explanation
Indices: 9104891--9105163 Score: 368
Period size: 46 Copynumber: 5.9 Consensus size: 46
9104881 TTTGACATGA
* * * * *
9104891 TGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTC-TGTCATGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCA-TTTCATATCACGT
* * *
9104937 TGCCATGGTATCTTTCAACCATGGTCTTATTCTTTTCATGTCACGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATATCACGT
* *** *
9104983 TGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCCCGTCATGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATATCACGT
* *
9105029 TGCCATGGTATCTTTCAACCATGGTCTTATTCGTTTCATATCACGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATATCACGT
* *
9105075 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATATCACGT
*
9105121 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCA
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATATCA
9105164 GAGAGCACAC
Statistics
Matches: 207, Mismatches: 19, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
45 4 0.02
46 203 0.98
ACGTcount: A:0.20, C:0.24, G:0.15, T:0.41
Consensus pattern (46 bp):
TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATATCACGT
Found at i:9114945 original size:204 final size:205
Alignment explanation
Indices: 9114504--9115051 Score: 864
Period size: 204 Copynumber: 2.7 Consensus size: 205
9114494 AGATCTGGCT
9114504 GAAGCAAGATCCAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAAGACATAGCTGA
1 GAAGC-AGATCCAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAAGACATAGCTGA
* *
9114569 TTTGGCTTTCACGTGCTTACGATGAAGCAAATCTAAGATGATTTGCCATCTCTGTATTGTCAGAG
65 TTTGGCTTTCACGTGCTTACGCTGAAGCAAATCTAAGATGATTTGGCATCTC-GTATTGTCAGAG
* * **
9114634 AATAAATCGAAGTTTGGCGTCTCCATATTCGACGGAGAGCAAACACATAGCAGATCTGGCCTTCA
129 AACAAATCGAAGTTTGGCATCTCCATATTCGACGGAGAGCAAACACATAGCAGATCTAACCTTCA
* *
9114699 GATGTTTATACC
194 GATGATTAAACC
* * *
9114711 GAAGCAGATCCAAGATGATTTGGCATCCTTGTGTTTACAAGGAACAAATCGAAGACATAGTTGAT
1 GAAGCAGATCCAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAAGACATAGCTGAT
* *
9114776 TTAGCTTTCACGTGCTTACGCTGAAGCAAGTCTAAGATGATTTGGCATCTC-TATTGTCAGAGAA
66 TTGGCTTTCACGTGCTTACGCTGAAGCAAATCTAAGATGATTTGGCATCTCGTATTGTCAGAGAA
* *
9114840 CAAATCGAAGTTTGGCATCTCCGTATTCGACGGAGAGCAGACACATAGCAGATCTAACCTTCAGA
131 CAAATCGAAGTTTGGCATCTCCATATTCGACGGAGAGCAAACACATAGCAGATCTAACCTTCAGA
*
9114905 TGATTAAACT
196 TGATTAAACC
* * *
9114915 GAAGTAGATCCAAGATGGTTTGGTATCCTTGTGCTTACAAGGAGCAAATCGAAGACATAGCTGAT
1 GAAGCAGATCCAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAAGACATAGCTGAT
* **
9114980 TTGGTTTTGGCGTGCTTACGCTGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGAGA
66 TTGGCTTTCACGTGCTTACGCTGAAGCAAATCTAAGATGATTTGGCATCTC-GTATTGTCAGAGA
9115045 ACAAATC
130 ACAAATC
9115052 AAAAAAGCAG
Statistics
Matches: 312, Mismatches: 27, Indels: 5
0.91 0.08 0.01
Matches are distributed among these distances:
204 184 0.59
206 123 0.39
207 5 0.02
ACGTcount: A:0.31, C:0.19, G:0.23, T:0.28
Consensus pattern (205 bp):
GAAGCAGATCCAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAAGACATAGCTGAT
TTGGCTTTCACGTGCTTACGCTGAAGCAAATCTAAGATGATTTGGCATCTCGTATTGTCAGAGAA
CAAATCGAAGTTTGGCATCTCCATATTCGACGGAGAGCAAACACATAGCAGATCTAACCTTCAGA
TGATTAAACC
Found at i:9116489 original size:16 final size:16
Alignment explanation
Indices: 9116470--9116503 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 16
9116460 ATTAAATTCA
9116470 ATTTT-AATAATTTTTT
1 ATTTTAAAT-ATTTTTT
9116486 ATTTTAAATATTTTTT
1 ATTTTAAATATTTTTT
9116502 AT
1 AT
9116504 ATTATTTATT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 14 0.82
17 3 0.18
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (16 bp):
ATTTTAAATATTTTTT
Found at i:9116510 original size:28 final size:27
Alignment explanation
Indices: 9116471--9116551 Score: 69
Period size: 28 Copynumber: 3.0 Consensus size: 27
9116461 TTAAATTCAA
*
9116471 TTTTAATAATTT-TTTATTTTAAATATT
1 TTTTAATAATTTATTT-TTATAAATATT
*
9116498 TTTTATATTATTTATTTTTATAAATATT
1 TTTTA-ATAATTTATTTTTATAAATATT
** *
9116526 AGTT-ATAATTT-TTATTTATATATATT
1 TTTTAATAATTTATT-TTTATAAATATT
9116552 ATCCATTATG
Statistics
Matches: 45, Mismatches: 6, Indels: 7
0.78 0.10 0.12
Matches are distributed among these distances:
25 2 0.04
26 17 0.38
27 5 0.11
28 18 0.40
29 3 0.07
ACGTcount: A:0.33, C:0.00, G:0.01, T:0.65
Consensus pattern (27 bp):
TTTTAATAATTTATTTTTATAAATATT
Found at i:9116536 original size:26 final size:25
Alignment explanation
Indices: 9116476--9116552 Score: 73
Period size: 26 Copynumber: 2.9 Consensus size: 25
9116466 TTCAATTTTA
* **
9116476 ATAATTTTTTATTTTAAATATTTTTT
1 ATAATTTTTT-TTATAAATATTAGTT
9116502 ATATTATTTATTTTTATAAATATTAGTT
1 ATA--ATTT-TTTTTATAAATATTAGTT
*
9116530 ATAATTTTTATTTATATATATTA
1 ATAATTTTT-TTTATAAATATTA
9116553 TCCATTATGT
Statistics
Matches: 43, Mismatches: 4, Indels: 8
0.78 0.07 0.15
Matches are distributed among these distances:
25 2 0.05
26 19 0.44
28 19 0.44
29 3 0.07
ACGTcount: A:0.35, C:0.00, G:0.01, T:0.64
Consensus pattern (25 bp):
ATAATTTTTTTTATAAATATTAGTT
Found at i:9116546 original size:22 final size:19
Alignment explanation
Indices: 9116499--9116608 Score: 55
Period size: 22 Copynumber: 5.4 Consensus size: 19
9116489 TTAAATATTT
9116499 TTTATATTATTTATTTTTA
1 TTTATATTATTTATTTTTA
**
9116518 TAAATATTAGTTATAATTTTTA
1 TTTATATTA-TT-T-ATTTTTA
**
9116540 TTTATA-TATATTATCCATTA
1 TTTATATTAT-TTAT-TTTTA
9116560 TGTTATATTATTGTATATTTTA
1 T-TTATATTATT-TAT-TTTTA
* *
9116582 TCTATA--AATTATATTTTA
1 TTTATATTATTTAT-TTTTA
9116600 TTATATATT
1 TT-TATATT
9116609 TCATTATATA
Statistics
Matches: 68, Mismatches: 12, Indels: 20
0.68 0.12 0.20
Matches are distributed among these distances:
18 10 0.15
19 15 0.22
20 8 0.12
21 14 0.21
22 21 0.31
ACGTcount: A:0.34, C:0.03, G:0.03, T:0.61
Consensus pattern (19 bp):
TTTATATTATTTATTTTTA
Found at i:9117638 original size:96 final size:96
Alignment explanation
Indices: 9117520--9117713 Score: 388
Period size: 96 Copynumber: 2.0 Consensus size: 96
9117510 TAACTTGTTG
9117520 GATGTAATATTTTGATTCATTTGATACAAGTGAACCCTAATTTTTCAAAATTAAAATATTCTGAA
1 GATGTAATATTTTGATTCATTTGATACAAGTGAACCCTAATTTTTCAAAATTAAAATATTCTGAA
9117585 GAGGATCAGATCTTAAAAATGTTAAATCTCC
66 GAGGATCAGATCTTAAAAATGTTAAATCTCC
9117616 GATGTAATATTTTGATTCATTTGATACAAGTGAACCCTAATTTTTCAAAATTAAAATATTCTGAA
1 GATGTAATATTTTGATTCATTTGATACAAGTGAACCCTAATTTTTCAAAATTAAAATATTCTGAA
9117681 GAGGATCAGATCTTAAAAATGTTAAATCTCC
66 GAGGATCAGATCTTAAAAATGTTAAATCTCC
9117712 GA
1 GA
9117714 CATTAAAGAC
Statistics
Matches: 98, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
96 98 1.00
ACGTcount: A:0.39, C:0.12, G:0.13, T:0.36
Consensus pattern (96 bp):
GATGTAATATTTTGATTCATTTGATACAAGTGAACCCTAATTTTTCAAAATTAAAATATTCTGAA
GAGGATCAGATCTTAAAAATGTTAAATCTCC
Found at i:9120319 original size:27 final size:26
Alignment explanation
Indices: 9120263--9120320 Score: 64
Period size: 27 Copynumber: 2.2 Consensus size: 26
9120253 ATATACTTAG
* *
9120263 ATTAAACCTTAATTAATTAATTAATTA
1 ATTAAACCTTAATGAATTAACTAA-TA
9120290 ATTAAACCTTAATCAGAATTAACTAA-A
1 ATTAAACCTTAAT--GAATTAACTAATA
9120317 ATTA
1 ATTA
9120321 GTGGATGATG
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
27 18 0.67
29 9 0.33
ACGTcount: A:0.50, C:0.10, G:0.02, T:0.38
Consensus pattern (26 bp):
ATTAAACCTTAATGAATTAACTAATA
Found at i:9143500 original size:24 final size:24
Alignment explanation
Indices: 9143468--9143516 Score: 98
Period size: 24 Copynumber: 2.0 Consensus size: 24
9143458 GAGATTTAAG
9143468 TTCACTTTCTTGTTTCTTTTTTCT
1 TTCACTTTCTTGTTTCTTTTTTCT
9143492 TTCACTTTCTTGTTTCTTTTTTCT
1 TTCACTTTCTTGTTTCTTTTTTCT
9143516 T
1 T
9143517 CTTTTCCTGC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.04, C:0.20, G:0.04, T:0.71
Consensus pattern (24 bp):
TTCACTTTCTTGTTTCTTTTTTCT
Found at i:9144081 original size:202 final size:200
Alignment explanation
Indices: 9143714--9144114 Score: 757
Period size: 202 Copynumber: 2.0 Consensus size: 200
9143704 AAATTGTTGA
*
9143714 ATTTCCGATTTTTGCTAATTATTTACATATAAATCATTGAACTGTCAATTTCTATGTCAACTTTT
1 ATTTCCGATATTTGCTAATTATTTACATATAAATCATTGAACTGTCAATTTCTATGTCAACTTTT
*
9143779 TAACCGTAAGGTTTAGCAAATCTTTAATTGGACATTTCCATAAAGTATAAGGATCAAATTTTGAC
66 TAACAGTAAGGTTTAGCAAATCTTTAATTGGACATTTCCATAAAGTATAAGGATCAAATTTTGAC
9143844 AAATTAAAGTAGAGGGGCTAACATATTAGTTTTTGTAAAGTAGAGGGATGGAATTCATAATTAAA
131 AAATTAAAGTAGAGGGGCTAACATATTAGTTTTTGTAAAGTAGAGGGATGGAATTCATAATTAAA
9143909 CCTAC
196 CCTAC
*
9143914 ATTTCCGATATTTGCTAATTATTTACATATAAATCATTGAACTGTTAATTTCTATGTCAACTTTT
1 ATTTCCGATATTTGCTAATTATTTACATATAAATCATTGAACTGTCAATTTCTATGTCAACTTTT
9143979 TAACAGTAAGGTTTAGCAATATTCTTTAATTGGACATTTCCATAAAGTATAAGGATCAAATTTTG
66 TAACAGTAAGGTTTAGCAA-A-TCTTTAATTGGACATTTCCATAAAGTATAAGGATCAAATTTTG
9144044 ACAAATTAAAGTAGAGGGGCTAACATATTAGTTTTTGTAAAGTAGAGGGATGGAATTCATAATTA
129 ACAAATTAAAGTAGAGGGGCTAACATATTAGTTTTTGTAAAGTAGAGGGATGGAATTCATAATTA
9144109 AACCTA
194 AACCTA
9144115 AAAAAAGTAA
Statistics
Matches: 196, Mismatches: 3, Indels: 2
0.98 0.01 0.01
Matches are distributed among these distances:
200 81 0.41
201 1 0.01
202 114 0.58
ACGTcount: A:0.36, C:0.12, G:0.15, T:0.37
Consensus pattern (200 bp):
ATTTCCGATATTTGCTAATTATTTACATATAAATCATTGAACTGTCAATTTCTATGTCAACTTTT
TAACAGTAAGGTTTAGCAAATCTTTAATTGGACATTTCCATAAAGTATAAGGATCAAATTTTGAC
AAATTAAAGTAGAGGGGCTAACATATTAGTTTTTGTAAAGTAGAGGGATGGAATTCATAATTAAA
CCTAC
Found at i:9149796 original size:52 final size:49
Alignment explanation
Indices: 9149720--9149817 Score: 151
Period size: 52 Copynumber: 1.9 Consensus size: 49
9149710 GTTGAGTGAG
9149720 AGAGAGAATGACACAGCCTAAATAAATCAACCAAATCATAGGTGCTCGC
1 AGAGAGAATGACACAGCCTAAATAAATCAACCAAATCATAGGTGCTCGC
* *
9149769 AGAGAGAATGACACCACAGCCTAAATAAATCAACCAATTCTTAGGTGCT
1 AGAGAGAATG--A-CACAGCCTAAATAAATCAACCAAATCATAGGTGCT
9149818 TGCATCCTCT
Statistics
Matches: 44, Mismatches: 2, Indels: 3
0.90 0.04 0.06
Matches are distributed among these distances:
49 10 0.23
51 1 0.02
52 33 0.75
ACGTcount: A:0.42, C:0.22, G:0.17, T:0.18
Consensus pattern (49 bp):
AGAGAGAATGACACAGCCTAAATAAATCAACCAAATCATAGGTGCTCGC
Found at i:9168235 original size:15 final size:17
Alignment explanation
Indices: 9168205--9168237 Score: 52
Period size: 15 Copynumber: 2.1 Consensus size: 17
9168195 AATGTTGAAT
9168205 ATGTTTGAATTGTATAA
1 ATGTTTGAATTGTATAA
9168222 ATGTTT-AA-TGTATAA
1 ATGTTTGAATTGTATAA
9168237 A
1 A
9168238 ATCAATTACA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 8 0.50
16 2 0.12
17 6 0.38
ACGTcount: A:0.39, C:0.00, G:0.15, T:0.45
Consensus pattern (17 bp):
ATGTTTGAATTGTATAA
Found at i:9168553 original size:25 final size:24
Alignment explanation
Indices: 9168525--9168577 Score: 72
Period size: 25 Copynumber: 2.2 Consensus size: 24
9168515 TACAAATGCA
9168525 GCTCTTTATGAG-TGTCCTGATATAG
1 GCTCTTTATGAGCT-TCCTGATAT-G
*
9168550 GCTCTTTTTGAGCTTCCTGATATG
1 GCTCTTTATGAGCTTCCTGATATG
9168574 GCTC
1 GCTC
9168578 GCTTGAACTT
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
24 5 0.19
25 20 0.77
26 1 0.04
ACGTcount: A:0.15, C:0.21, G:0.23, T:0.42
Consensus pattern (24 bp):
GCTCTTTATGAGCTTCCTGATATG
Found at i:9177615 original size:46 final size:46
Alignment explanation
Indices: 9177544--9177705 Score: 188
Period size: 46 Copynumber: 3.5 Consensus size: 46
9177534 ATCTCTCGAG
9177544 CTCAGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAGTGAA
1 CTCAGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAGTGAA
* * * *
9177590 CTCAGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTC-TCA---AA
1 CTCAGACTCAACTCAACGAGTTCGGA---C-ATTTGCATC-CATAAGTGAA
* *
9177637 CTCTGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAA
1 CTCAGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAGTGAA
*
9177683 CTCGGACTCAACTCAACGAGTTC
1 CTCAGACTCAACTCAACGAGTTC
9177706 CGATGCCCAA
Statistics
Matches: 96, Mismatches: 11, Indels: 18
0.77 0.09 0.14
Matches are distributed among these distances:
42 1 0.01
43 8 0.08
44 1 0.01
46 49 0.51
47 26 0.27
49 1 0.01
50 9 0.09
51 1 0.01
ACGTcount: A:0.30, C:0.30, G:0.17, T:0.23
Consensus pattern (46 bp):
CTCAGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAGTGAA
Found at i:9177648 original size:93 final size:93
Alignment explanation
Indices: 9177489--9177712 Score: 385
Period size: 93 Copynumber: 2.4 Consensus size: 93
9177479 AACCCGCCTC
* *
9177489 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTCTCGAGCTCAGACTCA
1 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTCTCAAACTCAGACTCA
*
9177554 ACTCAACGAGTTCGGACATTTGCATCCA
66 ACTCAACGAGTTCGGACATTCGCATCCA
* *
9177582 TAAGTGAACTCAGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTCTCAAACTCTGACTCA
1 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTCTCAAACTCAGACTCA
9177647 ACTCAACGAGTTCGGACATTCGCATCCA
66 ACTCAACGAGTTCGGACATTCGCATCCA
* *
9177675 TAAGTGAACTCGGACTCAACTCAACGAGTTCCGATGCC
1 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCC
9177713 CAAACATCCT
Statistics
Matches: 123, Mismatches: 8, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 123 1.00
ACGTcount: A:0.29, C:0.29, G:0.18, T:0.23
Consensus pattern (93 bp):
TAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTCTCAAACTCAGACTCA
ACTCAACGAGTTCGGACATTCGCATCCA
Found at i:9177655 original size:47 final size:47
Alignment explanation
Indices: 9177495--9177662 Score: 184
Period size: 47 Copynumber: 3.6 Consensus size: 47
9177485 CCTCTAAGTG
* *
9177495 AACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTCTCG
1 AACTCAGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTCTCA
* * * * *
9177542 AGCTCAGACTCAACTCAACGAGTTCGGA---C-ATTTGCATC-CATAA
1 AACTCAGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTC-TCA
9177585 GTGAACTCAGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTCTCA
1 ---AACTCAGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTCTCA
* *
9177635 AACTCTGACTCAACTCAACGAGTTCGGA
1 AACTCAGACTCAACTCAACGAGCTCGGA
9177663 CATTCGCATC
Statistics
Matches: 98, Mismatches: 14, Indels: 18
0.75 0.11 0.14
Matches are distributed among these distances:
42 1 0.01
43 8 0.08
44 1 0.01
46 26 0.27
47 51 0.52
49 1 0.01
50 9 0.09
51 1 0.01
ACGTcount: A:0.29, C:0.30, G:0.18, T:0.23
Consensus pattern (47 bp):
AACTCAGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTCTCA
Found at i:9184972 original size:25 final size:25
Alignment explanation
Indices: 9184944--9185041 Score: 101
Period size: 25 Copynumber: 4.0 Consensus size: 25
9184934 TCTCGAGCCA
9184944 TATAATGGGAAGCTCATGTGAGCTG
1 TATAATGGGAAGCTCATGTGAGCTG
* **
9184969 TATAATGGGAAGCTTATCCGAGCTG
1 TATAATGGGAAGCTCATGTGAGCTG
* *
9184994 TATAACGGGAAGCTCATATGAGC--
1 TATAATGGGAAGCTCATGTGAGCTG
* * *
9185017 CATATTCAGGAAGCTCATGTGAGCT
1 TATAAT-GGGAAGCTCATGTGAGCT
9185042 AATAACAGGT
Statistics
Matches: 59, Mismatches: 12, Indels: 4
0.79 0.16 0.05
Matches are distributed among these distances:
23 3 0.05
24 15 0.25
25 41 0.69
ACGTcount: A:0.30, C:0.16, G:0.28, T:0.27
Consensus pattern (25 bp):
TATAATGGGAAGCTCATGTGAGCTG
Found at i:9187785 original size:21 final size:21
Alignment explanation
Indices: 9187759--9187807 Score: 64
Period size: 20 Copynumber: 2.4 Consensus size: 21
9187749 AAATTTAATA
** *
9187759 AAAAATTTAAGATTTTCAAAT
1 AAAAATTTAAGAAATTAAAAT
9187780 AAAAA-TTAAGAAATTAAAAT
1 AAAAATTTAAGAAATTAAAAT
9187800 AAAAATTT
1 AAAAATTT
9187808 GTCTTTATTA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
20 17 0.71
21 7 0.29
ACGTcount: A:0.61, C:0.02, G:0.04, T:0.33
Consensus pattern (21 bp):
AAAAATTTAAGAAATTAAAAT
Found at i:9187788 original size:20 final size:20
Alignment explanation
Indices: 9187728--9187806 Score: 63
Period size: 20 Copynumber: 3.9 Consensus size: 20
9187718 AATGTCAGGT
* *
9187728 GAAATAAAAATAATAAAATAA
1 GAAATTAAAATAA-AAATTAA
*
9187749 -AAATTTAATAA-AAAATTTAA
1 GAAA-TTAA-AATAAAAATTAA
** *
9187769 GATTTTCAAATAAAAATTAA
1 GAAATTAAAATAAAAATTAA
9187789 GAAATTAAAATAAAAATT
1 GAAATTAAAATAAAAATT
9187807 TGTCTTTATT
Statistics
Matches: 44, Mismatches: 10, Indels: 9
0.70 0.16 0.14
Matches are distributed among these distances:
19 2 0.05
20 34 0.77
21 6 0.14
22 2 0.05
ACGTcount: A:0.66, C:0.01, G:0.04, T:0.29
Consensus pattern (20 bp):
GAAATTAAAATAAAAATTAA
Found at i:9189834 original size:6 final size:6
Alignment explanation
Indices: 9189825--9189874 Score: 52
Period size: 6 Copynumber: 8.8 Consensus size: 6
9189815 CAATATTAAT
* **
9189825 AATTTA AATTTA AATTTA AATATA AA-AAA AATTTA AA-TTA AA-TTA
1 AATTTA AATTTA AATTTA AATTTA AATTTA AATTTA AATTTA AATTTA
9189870 AATTT
1 AATTT
9189875 CTAAAAATAA
Statistics
Matches: 38, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
5 14 0.37
6 24 0.63
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (6 bp):
AATTTA
Found at i:9189849 original size:23 final size:22
Alignment explanation
Indices: 9189830--9189871 Score: 68
Period size: 23 Copynumber: 1.9 Consensus size: 22
9189820 TTAATAATTT
9189830 AAATTTAAATTTAAATATAAAAA
1 AAATTTAAA-TTAAATATAAAAA
9189853 AAATTTAAATTAAAT-TAAA
1 AAATTTAAATTAAATATAAA
9189872 TTTCTAAAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
21 4 0.21
22 6 0.32
23 9 0.47
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (22 bp):
AAATTTAAATTAAATATAAAAA
Found at i:9202710 original size:29 final size:29
Alignment explanation
Indices: 9202678--9202740 Score: 81
Period size: 29 Copynumber: 2.2 Consensus size: 29
9202668 TTTGCTAAAT
* * *
9202678 AATTTGGACTAAATCCATTTTTTTTTATG
1 AATTTGGACCAAATCCATTTCTTTTTATA
* *
9202707 AATTTTGTCCAAATCCATTTCTTTTTATA
1 AATTTGGACCAAATCCATTTCTTTTTATA
9202736 AATTT
1 AATTT
9202741 AGTTTTTATT
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.29, C:0.13, G:0.06, T:0.52
Consensus pattern (29 bp):
AATTTGGACCAAATCCATTTCTTTTTATA
Found at i:9204623 original size:14 final size:14
Alignment explanation
Indices: 9204604--9204634 Score: 62
Period size: 14 Copynumber: 2.2 Consensus size: 14
9204594 AGTTCATTTA
9204604 GCCCAACCAAACTG
1 GCCCAACCAAACTG
9204618 GCCCAACCAAACTG
1 GCCCAACCAAACTG
9204632 GCC
1 GCC
9204635 TGGTGATTTG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.32, C:0.45, G:0.16, T:0.06
Consensus pattern (14 bp):
GCCCAACCAAACTG
Found at i:9209743 original size:14 final size:14
Alignment explanation
Indices: 9209724--9209755 Score: 64
Period size: 14 Copynumber: 2.3 Consensus size: 14
9209714 AGGTCATTTA
9209724 GCCCAACCAAACTG
1 GCCCAACCAAACTG
9209738 GCCCAACCAAACTG
1 GCCCAACCAAACTG
9209752 GCCC
1 GCCC
9209756 GGTGATTGAG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.31, C:0.47, G:0.16, T:0.06
Consensus pattern (14 bp):
GCCCAACCAAACTG
Found at i:9211431 original size:30 final size:31
Alignment explanation
Indices: 9211397--9211460 Score: 94
Period size: 30 Copynumber: 2.1 Consensus size: 31
9211387 ACTTAACAAG
*
9211397 CAAATGCCTCTAAAATAATAA-TAAAATTAA
1 CAAATGCCTCTAAAATAATAACAAAAATTAA
* *
9211427 CAAATGTCTTTAAAATAATAACAAAAATTAA
1 CAAATGCCTCTAAAATAATAACAAAAATTAA
9211458 CAA
1 CAA
9211461 TAAATAAGTT
Statistics
Matches: 30, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
30 19 0.63
31 11 0.37
ACGTcount: A:0.58, C:0.12, G:0.03, T:0.27
Consensus pattern (31 bp):
CAAATGCCTCTAAAATAATAACAAAAATTAA
Found at i:9214048 original size:22 final size:22
Alignment explanation
Indices: 9214020--9214114 Score: 93
Period size: 22 Copynumber: 4.3 Consensus size: 22
9214010 CACTAGGATA
9214020 CCTACTGTTCAGCACTTCGGTG
1 CCTACTGTTCAGCACTTCGGTG
* * *
9214042 CCCACTG-TCTAACACTTCCGTG
1 CCTACTGTTC-AGCACTTCGGTG
* * *
9214064 CCTATTGCTCAGCACTTTGGTG
1 CCTACTGTTCAGCACTTCGGTG
* *
9214086 CCTATTGTTTAAGCACTTCGGTG
1 CCTACTG-TTCAGCACTTCGGTG
9214109 CCTACT
1 CCTACT
9214115 AGTGTGGTGT
Statistics
Matches: 58, Mismatches: 12, Indels: 5
0.77 0.16 0.07
Matches are distributed among these distances:
21 2 0.03
22 37 0.64
23 19 0.33
ACGTcount: A:0.16, C:0.32, G:0.19, T:0.34
Consensus pattern (22 bp):
CCTACTGTTCAGCACTTCGGTG
Found at i:9214078 original size:44 final size:45
Alignment explanation
Indices: 9214028--9214112 Score: 118
Period size: 44 Copynumber: 1.9 Consensus size: 45
9214018 TACCTACTGT
9214028 TCAGCACTTCGGTGCCCACTGTCTAA-CACTTCCGTGCCTATTGC
1 TCAGCACTTCGGTGCCCACTGTCTAAGCACTTCCGTGCCTATTGC
* * * * *
9214072 TCAGCACTTTGGTGCCTATTGTTTAAGCACTTCGGTGCCTA
1 TCAGCACTTCGGTGCCCACTGTCTAAGCACTTCCGTGCCTA
9214113 CTAGTGTGGT
Statistics
Matches: 35, Mismatches: 5, Indels: 1
0.85 0.12 0.02
Matches are distributed among these distances:
44 22 0.63
45 13 0.37
ACGTcount: A:0.16, C:0.31, G:0.20, T:0.33
Consensus pattern (45 bp):
TCAGCACTTCGGTGCCCACTGTCTAAGCACTTCCGTGCCTATTGC
Found at i:9214108 original size:23 final size:23
Alignment explanation
Indices: 9214030--9214112 Score: 98
Period size: 22 Copynumber: 3.7 Consensus size: 23
9214020 CCTACTGTTC
* *
9214030 AGCACTTCGGTGCCCACTGTCTA
1 AGCACTTCGGTGCCTATTGTCTA
* *
9214053 A-CACTTCCGTGCCTATTG-CTC
1 AGCACTTCGGTGCCTATTGTCTA
* *
9214074 AGCACTTTGGTGCCTATTGTTTA
1 AGCACTTCGGTGCCTATTGTCTA
9214097 AGCACTTCGGTGCCTA
1 AGCACTTCGGTGCCTA
9214113 CTAGTGTGGT
Statistics
Matches: 49, Mismatches: 9, Indels: 4
0.79 0.15 0.06
Matches are distributed among these distances:
21 3 0.06
22 29 0.59
23 17 0.35
ACGTcount: A:0.17, C:0.30, G:0.20, T:0.33
Consensus pattern (23 bp):
AGCACTTCGGTGCCTATTGTCTA
Found at i:9215477 original size:3 final size:3
Alignment explanation
Indices: 9215469--9215507 Score: 78
Period size: 3 Copynumber: 13.0 Consensus size: 3
9215459 AAGCATAAAC
9215469 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
9215508 CATTGGAATA
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 36 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:9215641 original size:3 final size:3
Alignment explanation
Indices: 9215627--9215677 Score: 50
Period size: 3 Copynumber: 17.3 Consensus size: 3
9215617 ACACTAGCAC
* * * * *
9215627 ATA ATT ATA ATA ATA GTA ATA CTA ATA ATA CTA ATA ATA TTA A-A ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
9215674 ATA A
1 ATA A
9215678 GGGTATTTGA
Statistics
Matches: 37, Mismatches: 10, Indels: 2
0.76 0.20 0.04
Matches are distributed among these distances:
2 2 0.05
3 35 0.95
ACGTcount: A:0.59, C:0.04, G:0.02, T:0.35
Consensus pattern (3 bp):
ATA
Found at i:9217202 original size:45 final size:45
Alignment explanation
Indices: 9217153--9217305 Score: 121
Period size: 45 Copynumber: 3.2 Consensus size: 45
9217143 ATCTCCGATC
9217153 TACTCCACTGTCAAATGCAGGGAGATAGAGTTATCAGCTTCAATG
1 TACTCCACTGTCAAATGCAGGGAGATAGAGTTATCAGCTTCAATG
* * * * * * *
9217198 TACTCCACTGT--AGTCACAGGGAGGTAAAATCTGCCATCTTTGATCTTCAATC
1 TACTCCACTGTCAAAT-GCAGGGAGATAGAGT-T---ATC----AGCTTCAATG
* * *
9217250 CATTCCACTGTCAAATGCAGGGAGATAGAGTTATCGGCTTCAATG
1 TACTCCACTGTCAAATGCAGGGAGATAGAGTTATCAGCTTCAATG
9217295 TACTCCACTGT
1 TACTCCACTGT
9217306 AGTCAGGGAG
Statistics
Matches: 78, Mismatches: 19, Indels: 22
0.66 0.16 0.18
Matches are distributed among these distances:
43 2 0.03
44 11 0.14
45 28 0.36
48 3 0.04
49 3 0.04
52 18 0.23
53 11 0.14
54 2 0.03
ACGTcount: A:0.28, C:0.23, G:0.20, T:0.29
Consensus pattern (45 bp):
TACTCCACTGTCAAATGCAGGGAGATAGAGTTATCAGCTTCAATG
Found at i:9217414 original size:44 final size:42
Alignment explanation
Indices: 9217356--9218459 Score: 975
Period size: 44 Copynumber: 25.2 Consensus size: 42
9217346 TGTCAACTAC
* * * * *
9217356 AGGAAGGCAAGATCTACAATCCTCGATCTACTTCACGCCAATAC
1 AGGAAGACAAGATCTGC-ATCTTCGATCTACTTC-CACCAATAT
* * * *
9217400 ATGAAGATAAGATCTGCTTTCTTCGATCTACTTTGCCACCAGTAT
1 AGGAAGACAAGATCTGC-ATCTTCGATCTAC-TT-CCACCAATAT
* * * *
9217445 GGGAAGACAAGATCTGCATCGTCGATCCACTTCCTACCGATAT
1 AGGAAGACAAGATCTGCATCTTCGATCTACTTCC-ACCAATAT
* * * *
9217488 AGGAAGACAGGACCTGCTATCTTCGATCTACTTCACGCCAATAC
1 AGGAAGACAAGATCTGC-ATCTTCGATCTACTTC-CACCAATAT
* * *
9217532 ATGAAGACAAGATCTGCTTTCTTCGATCTACTTCGCCACCAGTAT
1 AGGAAGACAAGATCTGC-ATCTTCGATCTACTT--CCACCAATAT
* * *
9217577 GGGAAGACAAGATCTGCATCGTCGATCCACTTCCTACCAATAT
1 AGGAAGACAAGATCTGCATCTTCGATCTACTTCC-ACCAATAT
* * * *
9217620 AGGAAGACAGGACCTGCTATCTTCGATCTACTTCACGCCAATAC
1 AGGAAGACAAGATCTGC-ATCTTCGATCTACTTC-CACCAATAT
* * * * *
9217664 ATGAAGACAAGATCTTCTTTCTGCGACCTACTTTGCCACCAATAT
1 AGGAAGACAAGATCTGC-ATCTTCGATCTAC-TT-CCACCAATAT
* *
9217709 GGGAAGACAAGATCTGCATCTTCGATCCACTTCCTACCAATAT
1 AGGAAGACAAGATCTGCATCTTCGATCTACTTCC-ACCAATAT
* * * * *
9217752 AGGAAGATAGGATCTGCTACCTTCGATCTACTTCACGCCAATAC
1 AGGAAGACAAGATCTGC-ATCTTCGATCTACTTC-CACCAATAT
* *
9217796 ATGAAGACAAGATCTGCATCTTCGATCTACTTCACGCCAATAT
1 AGGAAGACAAGATCTGCATCTTCGATCTACTTC-CACCAATAT
* * * * * *
9217839 AGGAAGATAGGATCTACTACCTTCGATCTACTTCACGCCAATAC
1 AGGAAGACAAGATCTGC-ATCTTCGATCTACTTC-CACCAATAT
* * ** *
9217883 ATGAAGATAAGATCTGTTTTCTGCGATCTACTTCGCCACCAATAT
1 AGGAAGACAAGATCTG-CATCTTCGATCTACTT--CCACCAATAT
* * *
9217928 GGGAAGACAAGATCTGCATCTTCGATCCACTTCCTACCGATAT
1 AGGAAGACAAGATCTGCATCTTCGATCTACTTCC-ACCAATAT
* * * * *
9217971 AGGAAGACAGGACCTGTTATCTTCGATCTACTTCACGCCAATAC
1 AGGAAGACAAGATCTG-CATCTTCGATCTACTTC-CACCAATAT
* * *
9218015 ATGAAGACAAGATCTGCTTTCTGCGATCTACTTTGCCACCAATAT
1 AGGAAGACAAGATCTGC-ATCTTCGATCTAC-TT-CCACCAATAT
* * *
9218060 GGGAAGACAAGATCTGCATCTTCGATCCATTTCCTACCAATAT
1 AGGAAGACAAGATCTGCATCTTCGATCTACTTCC-ACCAATAT
* * * * *
9218103 AGGAAGATAGGATCTGCTACCTTCGATCTACTTCACGCCAATAC
1 AGGAAGACAAGATCTGC-ATCTTCGATCTACTTC-CACCAATAT
*
9218147 ATGAAGACAAGATCTGCATCTTCGATCTACTTCGCCACCAATAT
1 AGGAAGACAAGATCTGCATCTTCGATCTACTT--CCACCAATAT
* *
9218191 GGGAAGACAAGATCTGCATCTTCGATCCACTTCCTACCAATAT
1 AGGAAGACAAGATCTGCATCTTCGATCTACTTCC-ACCAATAT
* * * * *
9218234 AGGAAGATAGGATCTGCTACCTTCGATCTACTTCACGCCAATAC
1 AGGAAGACAAGATCTGC-ATCTTCGATCTACTTC-CACCAATAT
* *
9218278 ATGAAGACAAGATCTGCATCTTCGATCCACTTCCTACCAATAT
1 AGGAAGACAAGATCTGCATCTTCGATCTACTTCC-ACCAATAT
* * * *
9218321 AGGAAGATAAGATCTGCTACCTTCGATCTACTTCACGCCAATAC
1 AGGAAGACAAGATCTGC-ATCTTCGATCTACTTC-CACCAATAT
* * *
9218365 ATGAAGACAAGATCTGCTTTCTGCGATCTACTTCGCCACCAATAT
1 AGGAAGACAAGATCTGC-ATCTTCGATCTACTT--CCACCAATAT
* *
9218410 GGGAAGACAAGATCTGCATCTTCGATCCACTTCCTACCAATAT
1 AGGAAGACAAGATCTGCATCTTCGATCTACTTCC-ACCAATAT
9218453 AGGAAGA
1 AGGAAGA
9218460 TAGGACCTAT
Statistics
Matches: 852, Mismatches: 169, Indels: 79
0.77 0.15 0.07
Matches are distributed among these distances:
42 15 0.02
43 233 0.27
44 458 0.54
45 140 0.16
46 6 0.01
ACGTcount: A:0.30, C:0.27, G:0.17, T:0.27
Consensus pattern (42 bp):
AGGAAGACAAGATCTGCATCTTCGATCTACTTCCACCAATAT
Found at i:9218096 original size:351 final size:350
Alignment explanation
Indices: 9217447--9218464 Score: 1637
Period size: 351 Copynumber: 2.9 Consensus size: 350
9217437 ACCAGTATGG
* * * *
9217447 GAAGACAAGATCTGCATCGTCGATCCACTTCCTACCGATATAGGAAGACAGGACCTGCTATCTTC
1 GAAGACAAGATCTGCATCTTCGATCTACTTCC-ACCAATATAGGAAGACAGGATCTGCTATCTTC
* *
9217512 GATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTTCGATCTACTTCGCCACCAGTAT
65 GATCTACTTCACGCCAATACATGAAGATAAGATCTGCTTTCTTCGATCTACTTCGCCACCAATAT
*
9217577 GGGAAGACAAGATCTGCATCGTCGATCCACTTCCTACCAATATAGGAAGACAGGACCTGCTATCT
130 GGGAAGACAAGATCTGCATCTTCGATCCACTTCCTACCAATATAGGAAGACAGGACCTGCTATCT
* *
9217642 TCGATCTACTTCACGCCAATACATGAAGACAAGATCTTCTTTCTGCGACCTACTTTGCCACCAAT
195 TCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTGCGATCTACTTTGCCACCAAT
9217707 ATGGGAAGACAAGATCTGCATCTTCGATCCACTTCCTACCAATATAGGAAGATAGGATCTGCTAC
260 ATGGGAAGACAAGATCTGCATCTTCGATCCACTTCCTACCAATATAGGAAGATAGGATCTGCTAC
9217772 CTTCGATCTACTTCACGCCAATACAT
325 CTTCGATCTACTTCACGCCAATACAT
* * * *
9217798 GAAGACAAGATCTGCATCTTCGATCTACTTCACGCCAATATAGGAAGATAGGATCTACTACCTTC
1 GAAGACAAGATCTGCATCTTCGATCTACTTC-CACCAATATAGGAAGACAGGATCTGCTATCTTC
* *
9217863 GATCTACTTCACGCCAATACATGAAGATAAGATCTGTTTTCTGCGATCTACTTCGCCACCAATAT
65 GATCTACTTCACGCCAATACATGAAGATAAGATCTGCTTTCTTCGATCTACTTCGCCACCAATAT
* *
9217928 GGGAAGACAAGATCTGCATCTTCGATCCACTTCCTACCGATATAGGAAGACAGGACCTGTTATCT
130 GGGAAGACAAGATCTGCATCTTCGATCCACTTCCTACCAATATAGGAAGACAGGACCTGCTATCT
9217993 TCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTGCGATCTACTTTGCCACCAAT
195 TCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTGCGATCTACTTTGCCACCAAT
*
9218058 ATGGGAAGACAAGATCTGCATCTTCGATCCATTTCCTACCAATATAGGAAGATAGGATCTGCTAC
260 ATGGGAAGACAAGATCTGCATCTTCGATCCACTTCCTACCAATATAGGAAGATAGGATCTGCTAC
9218123 CTTCGATCTACTTCACGCCAATACAT
325 CTTCGATCTACTTCACGCCAATACAT
* *
9218149 GAAGACAAGATCTGCATCTTCGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGC-ATCTT
1 GAAGACAAGATCTGCATCTTCGATCTACTT--CCACCAATATAGGAAGACAGGATCTGCTATCTT
* * * * * ** * *
9218213 CGATCCACTTC-CTACCAATATAGGAAGATAGGATCTGCTACCTTCGATCTACTTC-ACGCCAAT
64 CGATCTACTTCAC-GCCAATACATGAAGATAAGATCTGCTTTCTTCGATCTACTTCGCCACCAAT
*** * * * *
9218276 ACATGAAGACAAGATCTGCATCTTCGATCCACTTCCTACCAATATAGGAAGATAAGATCTGCTAC
128 ATGGGAAGACAAGATCTGCATCTTCGATCCACTTCCTACCAATATAGGAAGACAGGACCTGCTAT
*
9218341 CTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTGCGATCTACTTCGCCACCA
193 CTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTGCGATCTACTTTGCCACCA
9218406 ATATGGGAAGACAAGATCTGCATCTTCGATCCACTTCCTACCAATATAGGAAGATAGGA
258 ATATGGGAAGACAAGATCTGCATCTTCGATCCACTTCCTACCAATATAGGAAGATAGGA
9218465 CCTATTTACG
Statistics
Matches: 617, Mismatches: 46, Indels: 9
0.92 0.07 0.01
Matches are distributed among these distances:
350 185 0.30
351 409 0.66
352 22 0.04
353 1 0.00
ACGTcount: A:0.30, C:0.27, G:0.17, T:0.26
Consensus pattern (350 bp):
GAAGACAAGATCTGCATCTTCGATCTACTTCCACCAATATAGGAAGACAGGATCTGCTATCTTCG
ATCTACTTCACGCCAATACATGAAGATAAGATCTGCTTTCTTCGATCTACTTCGCCACCAATATG
GGAAGACAAGATCTGCATCTTCGATCCACTTCCTACCAATATAGGAAGACAGGACCTGCTATCTT
CGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTGCGATCTACTTTGCCACCAATA
TGGGAAGACAAGATCTGCATCTTCGATCCACTTCCTACCAATATAGGAAGATAGGATCTGCTACC
TTCGATCTACTTCACGCCAATACAT
Found at i:9218464 original size:219 final size:215
Alignment explanation
Indices: 9217356--9218459 Score: 1070
Period size: 219 Copynumber: 5.0 Consensus size: 215
9217346 TGTCAACTAC
* * * * * * *
9217356 AGGAAGGCAAGATCTACAATCCTCGATCTACTTCACGCCAATACATGAAGATAAGATCTGCTTTC
1 AGGAAGACAAGATCTGC-ATCTTCGATCTACTTCACGCCAATATAGGAAGACAAGATCTGCTATC
* * * * * *
9217421 TTCGATCTACTTTGCCACCAGTATGGGAAGACAAGATCTGC-ATCGTCGATCCACTTCCTACCGA
65 TTCGATCTAC-TT-CCACCAATATAGGAAGATAAGATCTGCTATCTTCGATCTACTTCC-ACCAA
* * * * * *
9217485 TATAGGAAGACAGGACCTGCTATCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCT
127 TATAGGAAGACAAGATCTGC-ATCTTCGATCTACTTCCCACCAATATAGGAAGACAAGATCTGC-
* * *
9217550 TTCTTCGATCTACTTCGCCACCAGTAT
190 ATCTTCGATCTACTTC-ACACCAATAT
* * * * * *
9217577 GGGAAGACAAGATCTGCATCGTCGATCCACTTC-CTACCAATATAGGAAGACAGGACCTGCTATC
1 AGGAAGACAAGATCTGCATCTTCGATCTACTTCAC-GCCAATATAGGAAGACAAGATCTGCTATC
* * * * * * * *
9217641 TTCGATCTACTTCACGCCAATACATGAAGACAAGATCTTCTTTCTGCGACCTACTTTGCCACCAA
65 TTCGATCTACTTC-CACCAATATAGGAAGATAAGATCTGCTATCTTCGATCTAC-TT-CCACCAA
* * * * *
9217706 TATGGGAAGACAAGATCTGCATCTTCGATCCACTTCCTACCAATATAGGAAGATAGGATCTGCTA
127 TATAGGAAGACAAGATCTGCATCTTCGATCTACTTCCCACCAATATAGGAAGACAAGATCTGC-A
* * *
9217771 CCTTCGATCTACTTCACGCCAATAC
191 TCTTCGATCTACTTCACACCAATAT
* * * * *
9217796 ATGAAGACAAGATCTGCATCTTCGATCTACTTCACGCCAATATAGGAAGATAGGATCTACTACCT
1 AGGAAGACAAGATCTGCATCTTCGATCTACTTCACGCCAATATAGGAAGACAAGATCTGCTATCT
* * * * * *
9217861 TCGATCTACTTCACGCCAATACATGAAGATAAGATCTGTTTTCTGCGATCTACTTCGCCACCAAT
66 TCGATCTACTTC-CACCAATATAGGAAGATAAGATCTGCTATCTTCGATCTACTT--CCACCAAT
* * * * * * *
9217926 ATGGGAAGACAAGATCTGCATCTTCGATCCACTTCCTACCGATATAGGAAGACAGGACCTGTTAT
128 ATAGGAAGACAAGATCTGCATCTTCGATCTACTTCCCACCAATATAGGAAGACAAGATCTG-CAT
* *
9217991 CTTCGATCTACTTCACGCCAATAC
192 CTTCGATCTACTTCACACCAATAT
* * * * *
9218015 ATGAAGACAAGATCTGCTTTCTGCGATCTACTTTGC-CACCAATATGGGAAGACAAGATCTGC-A
1 AGGAAGACAAGATCTGC-ATCTTCGATCTAC-TT-CACGCCAATATAGGAAGACAAGATCTGCTA
* * * * *
9218078 TCTTCGATCCATTTCCTACCAATATAGGAAGATAGGATCTGCTACCTTCGATCTACTTCACGCCA
63 TCTTCGATCTACTTCC-ACCAATATAGGAAGATAAGATCTGCTATCTTCGATCTACTTC-CACCA
* * *
9218143 ATACATGAAGACAAGATCTGCATCTTCGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGC
126 ATATAGGAAGACAAGATCTGCATCTTCGATCTACTTC-CCACCAATATAGGAAGACAAGATCTGC
*
9218208 ATCTTCGATCCACTTC-CTACCAATAT
190 ATCTTCGATCTACTTCAC-ACCAATAT
* * * * *
9218234 AGGAAGATAGGATCTGCTACCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGC-ATC
1 AGGAAGACAAGATCTGC-ATCTTCGATCTACTTCACGCCAATATAGGAAGACAAGATCTGCTATC
* * *
9218298 TTCGATCCACTTCCTACCAATATAGGAAGATAAGATCTGCTACCTTCGATCTACTTCACGCCAAT
65 TTCGATCTACTTCC-ACCAATATAGGAAGATAAGATCTGCTATCTTCGATCTACTTC-CACCAAT
* * * * *
9218363 ACATGAAGACAAGATCTGCTTTCTGCGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCA
128 ATAGGAAGACAAGATCTGC-ATCTTCGATCTACTTC-CCACCAATATAGGAAGACAAGATCTGCA
*
9218428 TCTTCGATCCACTTC-CTACCAATAT
191 TCTTCGATCTACTTCAC-ACCAATAT
9218453 AGGAAGA
1 AGGAAGA
9218460 TAGGACCTAT
Statistics
Matches: 761, Mismatches: 105, Indels: 36
0.84 0.12 0.04
Matches are distributed among these distances:
217 1 0.00
218 114 0.15
219 400 0.53
220 183 0.24
221 60 0.08
222 3 0.00
ACGTcount: A:0.30, C:0.27, G:0.17, T:0.27
Consensus pattern (215 bp):
AGGAAGACAAGATCTGCATCTTCGATCTACTTCACGCCAATATAGGAAGACAAGATCTGCTATCT
TCGATCTACTTCCACCAATATAGGAAGATAAGATCTGCTATCTTCGATCTACTTCCACCAATATA
GGAAGACAAGATCTGCATCTTCGATCTACTTCCCACCAATATAGGAAGACAAGATCTGCATCTTC
GATCTACTTCACACCAATAT
Found at i:9230257 original size:3 final size:3
Alignment explanation
Indices: 9230249--9230284 Score: 72
Period size: 3 Copynumber: 12.0 Consensus size: 3
9230239 AAGCATAAAC
9230249 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
9230285 CATTGGAATA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 33 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:9230421 original size:3 final size:3
Alignment explanation
Indices: 9230407--9230457 Score: 50
Period size: 3 Copynumber: 17.3 Consensus size: 3
9230397 ACACTAGCAC
* * * * *
9230407 ATA ATT ATA ATA ATA GTA ATA CTA ATA ATA CTA ATA ATA TTA A-A ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
9230454 ATA A
1 ATA A
9230458 GGGTATTTGA
Statistics
Matches: 37, Mismatches: 10, Indels: 2
0.76 0.20 0.04
Matches are distributed among these distances:
2 2 0.05
3 35 0.95
ACGTcount: A:0.59, C:0.04, G:0.02, T:0.35
Consensus pattern (3 bp):
ATA
Found at i:9235605 original size:21 final size:20
Alignment explanation
Indices: 9235562--9235606 Score: 56
Period size: 20 Copynumber: 2.2 Consensus size: 20
9235552 CTTTTATCAA
*
9235562 TTTAAAATTCTTTAAAAAAT
1 TTTAAAATTCTTGAAAAAAT
9235582 TTTAAAATT-TTGAATAACAAT
1 TTTAAAATTCTTGAA-AA-AAT
9235603 TTTA
1 TTTA
9235607 CATTAGGGGG
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
19 4 0.18
20 11 0.50
21 7 0.32
ACGTcount: A:0.47, C:0.04, G:0.02, T:0.47
Consensus pattern (20 bp):
TTTAAAATTCTTGAAAAAAT
Found at i:9243938 original size:26 final size:25
Alignment explanation
Indices: 9243909--9243957 Score: 62
Period size: 26 Copynumber: 1.9 Consensus size: 25
9243899 ATTACAAAAA
9243909 AAATTTAAAATATTTATAAAAATTTT
1 AAATTTAAAATATTTA-AAAAATTTT
* * *
9243935 AAATTTCATATTTTTAAAAAATT
1 AAATTTAAAATATTTAAAAAATT
9243958 ATAATTTTTT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
25 7 0.35
26 13 0.65
ACGTcount: A:0.51, C:0.02, G:0.00, T:0.47
Consensus pattern (25 bp):
AAATTTAAAATATTTAAAAAATTTT
Found at i:9244631 original size:40 final size:40
Alignment explanation
Indices: 9244579--9244659 Score: 162
Period size: 40 Copynumber: 2.0 Consensus size: 40
9244569 AACACATTTA
9244579 AAAATGTATATTTCATTTATTACAATATTAACAATGAGTT
1 AAAATGTATATTTCATTTATTACAATATTAACAATGAGTT
9244619 AAAATGTATATTTCATTTATTACAATATTAACAATGAGTT
1 AAAATGTATATTTCATTTATTACAATATTAACAATGAGTT
9244659 A
1 A
9244660 GCATAAATTA
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 41 1.00
ACGTcount: A:0.43, C:0.07, G:0.07, T:0.42
Consensus pattern (40 bp):
AAAATGTATATTTCATTTATTACAATATTAACAATGAGTT
Found at i:9245777 original size:16 final size:17
Alignment explanation
Indices: 9245756--9245793 Score: 60
Period size: 18 Copynumber: 2.2 Consensus size: 17
9245746 CAGTTCGTAT
9245756 TTTTAG-AAAACCATTG
1 TTTTAGAAAAACCATTG
9245772 TTTTAGTAAAAACCATTG
1 TTTTAG-AAAAACCATTG
9245790 TTTT
1 TTTT
9245794 TAGATATCAG
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
16 6 0.30
18 14 0.70
ACGTcount: A:0.34, C:0.11, G:0.11, T:0.45
Consensus pattern (17 bp):
TTTTAGAAAAACCATTG
Found at i:9246564 original size:18 final size:18
Alignment explanation
Indices: 9246541--9246577 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
9246531 TTTTTAGAAA
* *
9246541 TATGGGCCTACATGCCTG
1 TATGGGCCCACACGCCTG
9246559 TATGGGCCCACACGCCTG
1 TATGGGCCCACACGCCTG
9246577 T
1 T
9246578 GTGGCTCACA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.16, C:0.32, G:0.27, T:0.24
Consensus pattern (18 bp):
TATGGGCCCACACGCCTG
Found at i:9247735 original size:34 final size:34
Alignment explanation
Indices: 9247692--9247760 Score: 129
Period size: 34 Copynumber: 2.0 Consensus size: 34
9247682 GTACGAGATG
9247692 TTACTAAGATAGATGCAAGAAAAATACAACTTAA
1 TTACTAAGATAGATGCAAGAAAAATACAACTTAA
*
9247726 TTACTAAGATAGATGCAAGACAAATACAACTTAA
1 TTACTAAGATAGATGCAAGAAAAATACAACTTAA
9247760 T
1 T
9247761 ATCTTAAGAC
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 34 1.00
ACGTcount: A:0.51, C:0.13, G:0.12, T:0.25
Consensus pattern (34 bp):
TTACTAAGATAGATGCAAGAAAAATACAACTTAA
Found at i:9248163 original size:26 final size:25
Alignment explanation
Indices: 9248134--9248189 Score: 67
Period size: 26 Copynumber: 2.2 Consensus size: 25
9248124 TCAGATTGAG
* *
9248134 AAATTCAATTTAAATAATAAAATTTA
1 AAATTAAATTT-AATAATAAAATATA
*
9248160 AAATTTAAATTTAATTATAAAATATA
1 AAA-TTAAATTTAATAATAAAATATA
9248186 AAAT
1 AAAT
9248190 AATTATTTTA
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
25 1 0.04
26 18 0.69
27 7 0.27
ACGTcount: A:0.59, C:0.02, G:0.00, T:0.39
Consensus pattern (25 bp):
AAATTAAATTTAATAATAAAATATA
Found at i:9265685 original size:30 final size:30
Alignment explanation
Indices: 9265649--9265710 Score: 115
Period size: 30 Copynumber: 2.1 Consensus size: 30
9265639 TTCTCGTTTA
9265649 ATAATATTAACTTTCACAGAAGACAATTGC
1 ATAATATTAACTTTCACAGAAGACAATTGC
*
9265679 ATAATATTAACTTTCACAGAAGACAGTTGC
1 ATAATATTAACTTTCACAGAAGACAATTGC
9265709 AT
1 AT
9265711 GACTGCTTAT
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.42, C:0.16, G:0.11, T:0.31
Consensus pattern (30 bp):
ATAATATTAACTTTCACAGAAGACAATTGC
Found at i:9266338 original size:36 final size:36
Alignment explanation
Indices: 9266291--9266363 Score: 146
Period size: 36 Copynumber: 2.0 Consensus size: 36
9266281 CTGTTAAATG
9266291 ATTGAATTCAATCTGTAGTAGCTCGATTTTCAACAA
1 ATTGAATTCAATCTGTAGTAGCTCGATTTTCAACAA
9266327 ATTGAATTCAATCTGTAGTAGCTCGATTTTCAACAA
1 ATTGAATTCAATCTGTAGTAGCTCGATTTTCAACAA
9266363 A
1 A
9266364 CCGGAAATGG
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 37 1.00
ACGTcount: A:0.34, C:0.16, G:0.14, T:0.36
Consensus pattern (36 bp):
ATTGAATTCAATCTGTAGTAGCTCGATTTTCAACAA
Found at i:9278065 original size:21 final size:21
Alignment explanation
Indices: 9278040--9278095 Score: 69
Period size: 21 Copynumber: 2.7 Consensus size: 21
9278030 GTGAGGGTCT
**
9278040 CACACGCTCGTGTGTCCATCA
1 CACACGCTCGTGTGTCCAAAA
*
9278061 GACACGAC-CGTGTGTCCAAAA
1 CACACG-CTCGTGTGTCCAAAA
9278082 CACACGCTCGTGTG
1 CACACGCTCGTGTG
9278096 GGATCCCTAA
Statistics
Matches: 29, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
20 1 0.03
21 27 0.93
22 1 0.03
ACGTcount: A:0.23, C:0.34, G:0.23, T:0.20
Consensus pattern (21 bp):
CACACGCTCGTGTGTCCAAAA
Found at i:9284775 original size:26 final size:26
Alignment explanation
Indices: 9284748--9284798 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
9284738 TAGATTTTTA
*
9284748 AAAAATTTATAA-TTTTTAAAAATAT
1 AAAAATTTAGAATTTTTTAAAAATAT
* *
9284773 AAATATTTAGAATTTTTTATAAATAT
1 AAAAATTTAGAATTTTTTAAAAATAT
9284799 TTAGAATTTT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
25 10 0.45
26 12 0.55
ACGTcount: A:0.51, C:0.00, G:0.02, T:0.47
Consensus pattern (26 bp):
AAAAATTTAGAATTTTTTAAAAATAT
Found at i:9284788 original size:43 final size:44
Alignment explanation
Indices: 9284727--9284814 Score: 110
Period size: 44 Copynumber: 2.0 Consensus size: 44
9284717 AAAATTTATT
* *
9284727 TATATATATTTTAGA-TTTTTA-AAAAATTTATAATTTTTAAAAA
1 TATAAATATTTTAGATTTTTTATAAAAATTTAGAA-TTTTAAAAA
*
9284770 TATAAATA-TTTAGAATTTTTTATAAATATTTAGAATTTTAAAAA
1 TATAAATATTTTAG-ATTTTTTATAAAAATTTAGAATTTTAAAAA
9284814 T
1 T
9284815 TATTTTTAAT
Statistics
Matches: 39, Mismatches: 3, Indels: 5
0.83 0.06 0.11
Matches are distributed among these distances:
42 5 0.13
43 8 0.21
44 16 0.41
45 10 0.26
ACGTcount: A:0.47, C:0.00, G:0.03, T:0.50
Consensus pattern (44 bp):
TATAAATATTTTAGATTTTTTATAAAAATTTAGAATTTTAAAAA
Found at i:9284792 original size:63 final size:63
Alignment explanation
Indices: 9284710--9284833 Score: 162
Period size: 64 Copynumber: 2.0 Consensus size: 63
9284700 AGAAATTTTA
* *
9284710 AAATTTTAAAATTTATTTATATATATTTTAGATTTTTAAAAA-ATTTATAATTTTTAAAAATAT
1 AAATTTTAAAATTTATTTATAAATA-TTTAGAATTTTAAAAATATTTATAATTTTTAAAAATAT
* * *
9284773 AAATATTTAGAATTT-TTTATAAATATTTAGAATTTTAAAAATTATTTTTAATTTTTGAAAA
1 AAAT-TTTAAAATTTATTTATAAATATTTAGAATTTTAAAAA-TATTTATAATTTTTAAAAA
9284834 CTATTTTGAT
Statistics
Matches: 53, Mismatches: 5, Indels: 5
0.84 0.08 0.08
Matches are distributed among these distances:
62 15 0.28
63 13 0.25
64 25 0.47
ACGTcount: A:0.45, C:0.00, G:0.03, T:0.52
Consensus pattern (63 bp):
AAATTTTAAAATTTATTTATAAATATTTAGAATTTTAAAAATATTTATAATTTTTAAAAATAT
Found at i:9284795 original size:20 final size:20
Alignment explanation
Indices: 9284770--9284808 Score: 78
Period size: 20 Copynumber: 1.9 Consensus size: 20
9284760 TTTTTAAAAA
9284770 TATAAATATTTAGAATTTTT
1 TATAAATATTTAGAATTTTT
9284790 TATAAATATTTAGAATTTT
1 TATAAATATTTAGAATTTT
9284809 AAAAATTATT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.41, C:0.00, G:0.05, T:0.54
Consensus pattern (20 bp):
TATAAATATTTAGAATTTTT
Found at i:9284818 original size:19 final size:19
Alignment explanation
Indices: 9284773--9284839 Score: 64
Period size: 20 Copynumber: 3.4 Consensus size: 19
9284763 TTAAAAATAT
*
9284773 AAATATTTAGAATTTTTTAT
1 AAATATTTAGAA-TTTTTAA
9284793 AAATATTTAGAA-TTTTAA
1 AAATATTTAGAATTTTTAA
**
9284811 AAATTATTTTTAATTTTTGAA
1 AAA-TATTTAGAATTTTT-AA
*
9284832 AACTATTT
1 AAATATTT
9284840 TGATTTTTTT
Statistics
Matches: 40, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
18 8 0.20
19 7 0.17
20 21 0.52
21 4 0.10
ACGTcount: A:0.42, C:0.01, G:0.04, T:0.52
Consensus pattern (19 bp):
AAATATTTAGAATTTTTAA
Found at i:9284848 original size:20 final size:20
Alignment explanation
Indices: 9284776--9284847 Score: 60
Period size: 20 Copynumber: 3.7 Consensus size: 20
9284766 AAAATATAAA
* *
9284776 TATTTAGAATTTTTTATAAA-
1 TATTTTGAA-TTTTTAAAAAC
* *
9284796 TATTTAGAA-TTTTAAAAAT
1 TATTTTGAATTTTTAAAAAC
* *
9284815 TATTTTTAATTTTTGAAAAC
1 TATTTTGAATTTTTAAAAAC
9284835 TATTTTG-ATTTTT
1 TATTTTGAATTTTT
9284848 TTTGTAATTT
Statistics
Matches: 44, Mismatches: 6, Indels: 5
0.80 0.11 0.09
Matches are distributed among these distances:
18 8 0.18
19 13 0.30
20 23 0.52
ACGTcount: A:0.36, C:0.01, G:0.06, T:0.57
Consensus pattern (20 bp):
TATTTTGAATTTTTAAAAAC
Found at i:9294545 original size:21 final size:21
Alignment explanation
Indices: 9294519--9294559 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
9294509 ATCTGCTCAA
* *
9294519 ACTCCACCTGTTTTGGAGTAC
1 ACTCCACCTGCTGTGGAGTAC
9294540 ACTCCACCTGCTGTGGAGTA
1 ACTCCACCTGCTGTGGAGTA
9294560 TTGCTCGTCT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.20, C:0.29, G:0.22, T:0.29
Consensus pattern (21 bp):
ACTCCACCTGCTGTGGAGTAC
Found at i:9300188 original size:31 final size:32
Alignment explanation
Indices: 9300153--9300222 Score: 83
Period size: 29 Copynumber: 2.2 Consensus size: 32
9300143 CATTAAATCT
* *
9300153 AACCAAAAATAGCAAATATAGCATG-AAATGC
1 AACCAAAAACAGCAAATATAGCATGAAAATAC
*
9300184 AACC--AAACAGCAAATTTAGCATGCAAAATAC
1 AACCAAAAACAGCAAATATAGCATG-AAAATAC
9300215 AACCAAAA
1 AACCAAAA
9300223 CATTAAATCT
Statistics
Matches: 32, Mismatches: 3, Indels: 6
0.78 0.07 0.15
Matches are distributed among these distances:
29 17 0.53
31 13 0.41
33 2 0.06
ACGTcount: A:0.56, C:0.20, G:0.10, T:0.14
Consensus pattern (32 bp):
AACCAAAAACAGCAAATATAGCATGAAAATAC
Found at i:9300198 original size:29 final size:30
Alignment explanation
Indices: 9300163--9300221 Score: 84
Period size: 29 Copynumber: 2.0 Consensus size: 30
9300153 AACCAAAAAT
*
9300163 AGCAAATATAGCATG-AAATGCAACCAAAC
1 AGCAAATATAGCATGAAAATACAACCAAAC
*
9300192 AGCAAATTTAGCATGCAAAATACAACCAAA
1 AGCAAATATAGCATG-AAAATACAACCAAA
9300222 ACATTAAATC
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
29 14 0.54
31 12 0.46
ACGTcount: A:0.53, C:0.20, G:0.12, T:0.15
Consensus pattern (30 bp):
AGCAAATATAGCATGAAAATACAACCAAAC
Found at i:9300921 original size:13 final size:14
Alignment explanation
Indices: 9300895--9300923 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
9300885 ACTAACGACG
9300895 AATTAAACCATTAT
1 AATTAAACCATTAT
9300909 AATTAAA-CATTAT
1 AATTAAACCATTAT
9300922 AA
1 AA
9300924 ATATTTATAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 8 0.53
14 7 0.47
ACGTcount: A:0.55, C:0.10, G:0.00, T:0.34
Consensus pattern (14 bp):
AATTAAACCATTAT
Found at i:9306004 original size:9 final size:9
Alignment explanation
Indices: 9305990--9306127 Score: 74
Period size: 9 Copynumber: 15.3 Consensus size: 9
9305980 TAACTCTAAT
9305990 TAAGTTATG
1 TAAGTTATG
9305999 TAAGTTATG
1 TAAGTTATG
* * *
9306008 ATATGATATA
1 -TAAGTTATG
* *
9306018 T-ATTTATA
1 TAAGTTATG
9306026 T-A-TTATG
1 TAAGTTATG
9306033 TAAGTTATG
1 TAAGTTATG
*
9306042 TAAATTATG
1 TAAGTTATG
9306051 TAAGTTATCCG
1 TAAGTTAT--G
9306062 -AA-TTATG
1 TAAGTTATG
*
9306069 TAAATTATG
1 TAAGTTATG
*
9306078 TAAGATATGATA
1 TAAG-T-T-ATG
*
9306090 TATATTTATG
1 TA-AGTTATG
9306100 T-A-TTATG
1 TAAGTTATG
9306107 TAAGTTATG
1 TAAGTTATG
*
9306116 TAAATTATG
1 TAAGTTATG
9306125 TAA
1 TAA
9306128 AATATGATAT
Statistics
Matches: 102, Mismatches: 14, Indels: 26
0.72 0.10 0.18
Matches are distributed among these distances:
7 12 0.12
8 11 0.11
9 58 0.57
10 12 0.12
11 3 0.03
12 5 0.05
13 1 0.01
ACGTcount: A:0.38, C:0.01, G:0.14, T:0.46
Consensus pattern (9 bp):
TAAGTTATG
Found at i:9306050 original size:18 final size:18
Alignment explanation
Indices: 9306027--9306127 Score: 98
Period size: 18 Copynumber: 5.5 Consensus size: 18
9306017 ATATTTATAT
9306027 ATTATGTAAGTTATGTAA
1 ATTATGTAAGTTATGTAA
***
9306045 ATTATGTAAGTTATCCGA
1 ATTATGTAAGTTATGTAA
*
9306063 ATTATGTAAATTATGTAA
1 ATTATGTAAGTTATGTAA
* *
9306081 GATATGATATATATTTATGT--
1 -AT-T-ATGTA-AGTTATGTAA
9306101 ATTATGTAAGTTATGTAA
1 ATTATGTAAGTTATGTAA
9306119 ATTATGTAA
1 ATTATGTAA
9306128 AATATGATAT
Statistics
Matches: 66, Mismatches: 11, Indels: 12
0.74 0.12 0.13
Matches are distributed among these distances:
16 7 0.11
17 4 0.06
18 39 0.59
19 4 0.06
20 1 0.02
21 4 0.06
22 7 0.11
ACGTcount: A:0.39, C:0.02, G:0.15, T:0.45
Consensus pattern (18 bp):
ATTATGTAAGTTATGTAA
Found at i:9306113 original size:56 final size:55
Alignment explanation
Indices: 9306045--9306155 Score: 152
Period size: 56 Copynumber: 2.0 Consensus size: 55
9306035 AGTTATGTAA
* *
9306045 ATTATGTAAGTTATCCGAATTATGTAAATTATG-TAAGATATGATATATATTTATGT
1 ATTATGTAAGTTATCCAAATTATGTAAAATATGAT-AGATAT-ATATATATTTATGT
** *
9306101 ATTATGTAAGTTATGTAAATTATGTAAAATATGATATATATATATATATTTATGT
1 ATTATGTAAGTTATCCAAATTATGTAAAATATGATAGATATATATATATTTATGT
9306156 TGATGGGATT
Statistics
Matches: 49, Mismatches: 5, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
55 14 0.29
56 34 0.69
57 1 0.02
ACGTcount: A:0.40, C:0.02, G:0.13, T:0.46
Consensus pattern (55 bp):
ATTATGTAAGTTATCCAAATTATGTAAAATATGATAGATATATATATATTTATGT
Found at i:9306120 original size:47 final size:48
Alignment explanation
Indices: 9306064--9306155 Score: 150
Period size: 47 Copynumber: 1.9 Consensus size: 48
9306054 GTTATCCGAA
* * *
9306064 TTATGTAAATTATGTAAGATATGATATATATTTATGTA-TTATGTAAG
1 TTATGTAAATTATGTAAAATATGATATATATATATATATTTATGTAAG
9306111 TTATGTAAATTATGTAAAATATGATATATATATATATATTTATGT
1 TTATGTAAATTATGTAAAATATGATATATATATATATATTTATGT
9306156 TGATGGGATT
Statistics
Matches: 41, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
47 35 0.85
48 6 0.15
ACGTcount: A:0.40, C:0.00, G:0.12, T:0.48
Consensus pattern (48 bp):
TTATGTAAATTATGTAAAATATGATATATATATATATATTTATGTAAG
Found at i:9306128 original size:9 final size:9
Alignment explanation
Indices: 9306027--9306133 Score: 85
Period size: 9 Copynumber: 11.7 Consensus size: 9
9306017 ATATTTATAT
9306027 ATTATGTAA
1 ATTATGTAA
*
9306036 GTTATGTAA
1 ATTATGTAA
9306045 ATTATGTAA
1 ATTATGTAA
* ***
9306054 GTTATCCGA
1 ATTATGTAA
9306063 ATTATGTAA
1 ATTATGTAA
9306072 ATTATGTAA
1 ATTATGTAA
9306081 GA-TATGATATA
1 -ATTATG-TA-A
9306092 TATTTATGT--
1 -A-TTATGTAA
9306101 ATTATGTAA
1 ATTATGTAA
*
9306110 GTTATGTAA
1 ATTATGTAA
9306119 ATTATGTAA
1 ATTATGTAA
*
9306128 AATATG
1 ATTATG
9306134 ATATATATAT
Statistics
Matches: 77, Mismatches: 14, Indels: 14
0.73 0.13 0.13
Matches are distributed among these distances:
7 6 0.08
8 1 0.01
9 60 0.78
10 3 0.04
11 2 0.03
12 1 0.01
13 4 0.05
ACGTcount: A:0.39, C:0.02, G:0.15, T:0.44
Consensus pattern (9 bp):
ATTATGTAA
Found at i:9306509 original size:5 final size:5
Alignment explanation
Indices: 9306499--9306523 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
9306489 TTTTCGTGAT
9306499 TAAAA TAAAA TAAAA TAAAA TAAAA
1 TAAAA TAAAA TAAAA TAAAA TAAAA
9306524 CTTTAAATAC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.80, C:0.00, G:0.00, T:0.20
Consensus pattern (5 bp):
TAAAA
Found at i:9306514 original size:48 final size:48
Alignment explanation
Indices: 9306462--9306619 Score: 162
Period size: 48 Copynumber: 3.3 Consensus size: 48
9306452 AGGTCATTTA
9306462 AAAATAAAATAAAAGTAGACAAAAGTTTTTTCGTGATTAAAATAAAAT
1 AAAATAAAATAAAAGTAGACAAAAGTTTTTTCGTGATTAAAATAAAAT
* ** * * * ** **
9306510 AAAATAAAATAAAACTTTA-AATACAATTTAATT--TAATT-AGGTAATTT
1 AAAATAAAATAAAAGTAGACAA-A-AGTTT-TTTCGTGATTAAAATAAAAT
9306557 AAAAGTAAAATAAAAGTAGACAAAAGTTTTTTCGTGATTAAAATAAAAT
1 AAAA-TAAAATAAAAGTAGACAAAAGTTTTTTCGTGATTAAAATAAAAT
9306606 AAAATAAAATAAAA
1 AAAATAAAATAAAA
9306620 CTTTAAATTT
Statistics
Matches: 82, Mismatches: 20, Indels: 16
0.69 0.17 0.14
Matches are distributed among these distances:
46 2 0.02
47 15 0.18
48 48 0.59
49 15 0.18
50 2 0.02
ACGTcount: A:0.58, C:0.04, G:0.08, T:0.30
Consensus pattern (48 bp):
AAAATAAAATAAAAGTAGACAAAAGTTTTTTCGTGATTAAAATAAAAT
Found at i:9306546 original size:96 final size:96
Alignment explanation
Indices: 9306404--9306677 Score: 487
Period size: 96 Copynumber: 2.9 Consensus size: 96
9306394 TAAAATAAAA
** *
9306404 TAAAATAAAAT-ATTTAAAATAAAACTTTAAATACAATTTAATTTAATTAGGTCATTTAAAAATA
1 TAAAATAAAATAAAATAAAATAAAACTTTAAATACAATTTAATTTAATTAGGTAATTTAAAAATA
9306468 AAATAAAAGTAGACAAAAGTTTTTTCGTGAT
66 AAATAAAAGTAGACAAAAGTTTTTTCGTGAT
*
9306499 TAAAATAAAATAAAATAAAATAAAACTTTAAATACAATTTAATTTAATTAGGTAATTTAAAAGTA
1 TAAAATAAAATAAAATAAAATAAAACTTTAAATACAATTTAATTTAATTAGGTAATTTAAAAATA
9306564 AAATAAAAGTAGACAAAAGTTTTTTCGTGAT
66 AAATAAAAGTAGACAAAAGTTTTTTCGTGAT
**
9306595 TAAAATAAAATAAAATAAAATAAAACTTTAAATTTAATTTAATTTAATTAGGTAATTTAAAAATA
1 TAAAATAAAATAAAATAAAATAAAACTTTAAATACAATTTAATTTAATTAGGTAATTTAAAAATA
9306660 AAATAAAAGTAGACAAAA
66 AAATAAAAGTAGACAAAA
9306678 TATTTTAAAC
Statistics
Matches: 171, Mismatches: 7, Indels: 1
0.96 0.04 0.01
Matches are distributed among these distances:
95 11 0.06
96 160 0.94
ACGTcount: A:0.55, C:0.04, G:0.07, T:0.34
Consensus pattern (96 bp):
TAAAATAAAATAAAATAAAATAAAACTTTAAATACAATTTAATTTAATTAGGTAATTTAAAAATA
AAATAAAAGTAGACAAAAGTTTTTTCGTGAT
Found at i:9306605 original size:5 final size:5
Alignment explanation
Indices: 9306595--9306619 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
9306585 TTTTCGTGAT
9306595 TAAAA TAAAA TAAAA TAAAA TAAAA
1 TAAAA TAAAA TAAAA TAAAA TAAAA
9306620 CTTTAAATTT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.80, C:0.00, G:0.00, T:0.20
Consensus pattern (5 bp):
TAAAA
Found at i:9306658 original size:48 final size:46
Alignment explanation
Indices: 9306418--9306667 Score: 134
Period size: 48 Copynumber: 5.2 Consensus size: 46
9306408 ATAAAATATT
*
9306418 TAAAATAAAACTTTAAATACAATTTAATTTAATTAGGTCATTTAAAAA
1 TAAAATAAAACTTTAAAT--AATTTAATTTAATTAGGTAATTTAAAAA
* ** * * ** **
9306466 TAAAATAAAAGTAGACAA-AAGTTT-TTTCGTGATTAAAATAAAAT-AAAA
1 TAAAATAAAACTTTA-AATAA-TTTAATT--TAATT-AGGTAATTTAAAAA
*
9306514 TAAAATAAAACTTTAAATACAATTTAATTTAATTAGGTAATTTAAAAG
1 TAAAATAAAACTTTAAAT--AATTTAATTTAATTAGGTAATTTAAAAA
* ** * * ** **
9306562 TAAAATAAAAGTAGACAA-AAGTTT-TTTCGTGATTAAAATAAAAT-AAAA
1 TAAAATAAAACTTTA-AATAA-TTTAATT--TAATT-AGGTAATTTAAAAA
9306610 TAAAATAAAACTTTAAATTTAATTTAATTTAATTAGGTAATTTAAAAA
1 TAAAATAAAACTTTAAA--TAATTTAATTTAATTAGGTAATTTAAAAA
9306658 TAAAATAAAA
1 TAAAATAAAA
9306668 GTAGACAAAA
Statistics
Matches: 143, Mismatches: 39, Indels: 40
0.64 0.18 0.18
Matches are distributed among these distances:
46 8 0.06
47 20 0.14
48 88 0.62
49 19 0.13
50 8 0.06
ACGTcount: A:0.55, C:0.04, G:0.07, T:0.34
Consensus pattern (46 bp):
TAAAATAAAACTTTAAATAATTTAATTTAATTAGGTAATTTAAAAA
Found at i:9307509 original size:8 final size:8
Alignment explanation
Indices: 9307496--9307551 Score: 67
Period size: 8 Copynumber: 7.0 Consensus size: 8
9307486 CAAAAAATTC
9307496 CACTATTA
1 CACTATTA
9307504 CACTATTA
1 CACTATTA
9307512 CACTATTA
1 CACTATTA
** *
9307520 TGCAATTA
1 CACTATTA
*
9307528 CACTATTC
1 CACTATTA
*
9307536 CACTATTC
1 CACTATTA
9307544 CACTATTA
1 CACTATTA
9307552 TCATAATCAC
Statistics
Matches: 40, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
8 40 1.00
ACGTcount: A:0.34, C:0.27, G:0.02, T:0.38
Consensus pattern (8 bp):
CACTATTA
Found at i:9307540 original size:32 final size:32
Alignment explanation
Indices: 9307491--9307552 Score: 97
Period size: 32 Copynumber: 1.9 Consensus size: 32
9307481 CCAATCAAAA
*
9307491 AATTCCACTATTACACTATTACACTATTATGC
1 AATTACACTATTACACTATTACACTATTATGC
* *
9307523 AATTACACTATTCCACTATTCCACTATTAT
1 AATTACACTATTACACTATTACACTATTAT
9307553 CATAATCACA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
32 27 1.00
ACGTcount: A:0.34, C:0.26, G:0.02, T:0.39
Consensus pattern (32 bp):
AATTACACTATTACACTATTACACTATTATGC
Found at i:9309163 original size:104 final size:104
Alignment explanation
Indices: 9308995--9309206 Score: 372
Period size: 104 Copynumber: 2.0 Consensus size: 104
9308985 GGGTTGTTGT
* *
9308995 GTGCTGATTCCCCGATTTATGGGTGGTGCTATGTGCGTGATCCACCATATCTTTGAAATGTGAAA
1 GTGCTGATTCCCCGATTCATGGGTGGTGCTAAGTGCGTGATCCACCATATCTTTGAAATGTGAAA
9309060 GGGGGTTGCTATGTGCTGATTCCCCCGAGGGGTTGCTAA
66 GGGGGTTGCTATGTGCTGATTCCCCCGAGGGGTTGCTAA
* *
9309099 GTGCTGATTCCCCGGTTCATTGGTGGTGCTAAGTGCGAT-ATCCACCATATCTTTGAAATGTGAA
1 GTGCTGATTCCCCGATTCATGGGTGGTGCTAAGTGCG-TGATCCACCATATCTTTGAAATGTGAA
9309163 AGGGGGTTGCTATGTGCTGATTCCCCCGAGGGGTTGCTAA
65 AGGGGGTTGCTATGTGCTGATTCCCCCGAGGGGTTGCTAA
9309203 GTGC
1 GTGC
9309207 GATATCCATT
Statistics
Matches: 103, Mismatches: 4, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
104 102 0.99
105 1 0.01
ACGTcount: A:0.18, C:0.20, G:0.31, T:0.31
Consensus pattern (104 bp):
GTGCTGATTCCCCGATTCATGGGTGGTGCTAAGTGCGTGATCCACCATATCTTTGAAATGTGAAA
GGGGGTTGCTATGTGCTGATTCCCCCGAGGGGTTGCTAA
Found at i:9309271 original size:26 final size:26
Alignment explanation
Indices: 9309236--9309287 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
9309226 AAATGAAAAG
* *
9309236 GGGGTTGCTATGTGCTGATTCCCCGA
1 GGGGTTGCTAAGTGATGATTCCCCGA
9309262 GGGGTTGCTAAGTGATGATTCCCCGA
1 GGGGTTGCTAAGTGATGATTCCCCGA
9309288 TTCAGTGGTG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.15, C:0.21, G:0.35, T:0.29
Consensus pattern (26 bp):
GGGGTTGCTAAGTGATGATTCCCCGA
Found at i:9309274 original size:70 final size:72
Alignment explanation
Indices: 9309125--9309275 Score: 243
Period size: 72 Copynumber: 2.1 Consensus size: 72
9309115 TCATTGGTGG
* *
9309125 TGCTAAGTGCGATATCCACCATATCTTTGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCC
1 TGCTAAGTGCGATATCCACCATATATTTGAAATGTAAAAGGGGGTTGCTATGTGCTGATTCCCCC
9309190 GAGGGGT
66 GAGGGGT
***
9309197 TGCTAAGTGCGATATCCATTGTATATTTGAAATG-AAAAGGGGGTTGCTATGTGCTGATT-CCCC
1 TGCTAAGTGCGATATCCACCATATATTTGAAATGTAAAAGGGGGTTGCTATGTGCTGATTCCCCC
9309260 GAGGGGT
66 GAGGGGT
9309267 TGCTAAGTG
1 TGCTAAGTG
9309276 ATGATTCCCC
Statistics
Matches: 74, Mismatches: 5, Indels: 2
0.91 0.06 0.02
Matches are distributed among these distances:
70 20 0.27
71 24 0.32
72 30 0.41
ACGTcount: A:0.23, C:0.17, G:0.30, T:0.30
Consensus pattern (72 bp):
TGCTAAGTGCGATATCCACCATATATTTGAAATGTAAAAGGGGGTTGCTATGTGCTGATTCCCCC
GAGGGGT
Found at i:9311792 original size:127 final size:127
Alignment explanation
Indices: 9311583--9311816 Score: 348
Period size: 127 Copynumber: 1.8 Consensus size: 127
9311573 CGACGTGTAT
* * * *
9311583 AGTAAACTTTAATTCTTTTGTGGCGTTTTTAAAAGCGCCACTAATACACTATTATACTAAAACGG
1 AGTAAACTTTAATTCTGTTGCGGCGTTTTTAAAAGCGCCACTAATACACTATCATACTAAAACGA
9311648 CGCCGTTTTCTTTAAACTATACTGTCTTTTGCGGTGTTTTTTAGAAAAACGACGATGCTTCC
66 CGCCGTTTTCTTTAAACTATACTGTCTTTTGCGGTGTTTTTTAGAAAAACGACGATGCTTCC
* *
9311710 AGTACACTTTAATTCTGTTGCGGCGTTTTTCAAAA-CGCCACTAAT-CCCTTATCCA-ACTAAAA
1 AGTAAACTTTAATTCTGTTGCGGCGTTTTT-AAAAGCGCCACTAATACAC-TAT-CATACTAAAA
* *
9311772 TGACGCCGTTTTCTTTAAACTATACTGTTTTTTGCGGTGTTTTTT
63 CGACGCCGTTTTCTTTAAACTATACTGTCTTTTGCGGTGTTTTTT
9311817 TAAATAACGC
Statistics
Matches: 96, Mismatches: 8, Indels: 6
0.87 0.07 0.05
Matches are distributed among these distances:
126 2 0.02
127 89 0.93
128 5 0.05
ACGTcount: A:0.26, C:0.20, G:0.15, T:0.39
Consensus pattern (127 bp):
AGTAAACTTTAATTCTGTTGCGGCGTTTTTAAAAGCGCCACTAATACACTATCATACTAAAACGA
CGCCGTTTTCTTTAAACTATACTGTCTTTTGCGGTGTTTTTTAGAAAAACGACGATGCTTCC
Found at i:9312748 original size:21 final size:21
Alignment explanation
Indices: 9312714--9312769 Score: 58
Period size: 21 Copynumber: 2.6 Consensus size: 21
9312704 ATCTTAGACT
* *
9312714 CTAACCCCTAAACCATAAACCC
1 CTAA-CCCTTAACCACAAACCC
* *
9312736 TTAACCCTTAACCACACACCC
1 CTAACCCTTAACCACAAACCC
*
9312757 CTAATCCTTAACC
1 CTAACCCTTAACC
9312770 CCTAACATGG
Statistics
Matches: 28, Mismatches: 6, Indels: 1
0.80 0.17 0.03
Matches are distributed among these distances:
21 25 0.89
22 3 0.11
ACGTcount: A:0.36, C:0.45, G:0.00, T:0.20
Consensus pattern (21 bp):
CTAACCCTTAACCACAAACCC
Found at i:9315700 original size:48 final size:48
Alignment explanation
Indices: 9315520--9315697 Score: 248
Period size: 48 Copynumber: 3.7 Consensus size: 48
9315510 TAGGGTTATG
* *
9315520 TGTGATCCCACGTAAGACCATGTCTGGGACATGGCATTGGCATCGATA
1 TGTGATCCCATGTAAGACCATATCTGGGACATGGCATTGGCATCGATA
* * *
9315568 TGTGATCCCATGTAAGACCATATCTGAGATATGGCATTGGAATCGATA
1 TGTGATCCCATGTAAGACCATATCTGGGACATGGCATTGGCATCGATA
* * *
9315616 TGTGATCCCATGTAAGACCATATCTAGGATATGGTATTGGCATCGATA
1 TGTGATCCCATGTAAGACCATATCTGGGACATGGCATTGGCATCGATA
** * *
9315664 TGTGATTTCATGTAAGACTATGTCTGGGACATGG
1 TGTGATCCCATGTAAGACCATATCTGGGACATGG
9315698 TATCGATATG
Statistics
Matches: 115, Mismatches: 15, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
48 115 1.00
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (48 bp):
TGTGATCCCATGTAAGACCATATCTGGGACATGGCATTGGCATCGATA
Found at i:9316215 original size:18 final size:18
Alignment explanation
Indices: 9316173--9316217 Score: 67
Period size: 17 Copynumber: 2.6 Consensus size: 18
9316163 GAAAAATGAG
*
9316173 AATTTTT-AAAATACGAA
1 AATTTTTGAAAACACGAA
9316190 AA-TTTTGAAAACACGAA
1 AATTTTTGAAAACACGAA
9316207 AATTTTTGAAA
1 AATTTTTGAAA
9316218 CATAAATTAT
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
16 4 0.16
17 13 0.52
18 8 0.32
ACGTcount: A:0.51, C:0.07, G:0.09, T:0.33
Consensus pattern (18 bp):
AATTTTTGAAAACACGAA
Found at i:9316838 original size:15 final size:17
Alignment explanation
Indices: 9316818--9316849 Score: 50
Period size: 15 Copynumber: 2.0 Consensus size: 17
9316808 TTAGGAAACG
9316818 TACATAA-A-AAATATA
1 TACATAATATAAATATA
9316833 TACATAATATAAATATA
1 TACATAATATAAATATA
9316850 ATATATACAA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
15 7 0.47
16 1 0.07
17 7 0.47
ACGTcount: A:0.62, C:0.06, G:0.00, T:0.31
Consensus pattern (17 bp):
TACATAATATAAATATA
Found at i:9317394 original size:11 final size:11
Alignment explanation
Indices: 9317360--9317401 Score: 50
Period size: 11 Copynumber: 3.9 Consensus size: 11
9317350 AAATCATTTT
9317360 GAAGAGAGAAA
1 GAAGAGAGAAA
* *
9317371 GAA-AAAAAAA
1 GAAGAGAGAAA
*
9317381 GAAGGGAGAAA
1 GAAGAGAGAAA
9317392 GAAGAGAGAA
1 GAAGAGAGAA
9317402 GGGAGGGGGA
Statistics
Matches: 24, Mismatches: 6, Indels: 2
0.75 0.19 0.06
Matches are distributed among these distances:
10 8 0.33
11 16 0.67
ACGTcount: A:0.67, C:0.00, G:0.33, T:0.00
Consensus pattern (11 bp):
GAAGAGAGAAA
Found at i:9318885 original size:72 final size:72
Alignment explanation
Indices: 9318748--9318933 Score: 273
Period size: 72 Copynumber: 2.6 Consensus size: 72
9318738 AGTGTGTGAT
* ** *
9318748 TTGAAGCTCAACTCACCTCTCGCAATATAAGTTGATTTTTTTGAAAACAGAAATTGAAAATACCT
1 TTGAGGCTCAACTCATTTCTCGCAATATGAGTTGA--TTTTTGAAAACAGAAATTGAAAATACCT
9318813 CAACGTGTC
64 CAACGTGTC
* *
9318822 TTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCA
1 TTGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTTGAAAACAGAAATTGAAAATACCTCA
*
9318887 GCGTGTC
66 ACGTGTC
**
9318894 CCGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTT
1 TTGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTT
9318934 TTGAAAGATA
Statistics
Matches: 102, Mismatches: 10, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
72 71 0.70
74 31 0.30
ACGTcount: A:0.31, C:0.20, G:0.16, T:0.33
Consensus pattern (72 bp):
TTGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTTGAAAACAGAAATTGAAAATACCTCA
ACGTGTC
Found at i:9319238 original size:72 final size:72
Alignment explanation
Indices: 9319106--9320204 Score: 1471
Period size: 72 Copynumber: 15.0 Consensus size: 72
9319096 GAAAAATAGA
* * * * *
9319106 TTGAAACACAAAAATTGACAA-TACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTTGCAATATA
1 TTGAAA-ACAGAAATTGA-AATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATG
9319170 AGTTGATTT
64 AGTTGATTT
* *
9319179 TTGAAAACAGAAATTGAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAG
1 TTGAAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAG
9319244 TTGATTT
66 TTGATTT
* * *
9319251 TTGAAAATAGAAATTGAGATTACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAG
1 TTGAAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAG
9319316 TTGATTT
66 TTGATTT
* * *
9319323 TTGAAAATAGAAATTGAGATTACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAG
1 TTGAAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAG
9319388 TTGATTTTT
66 TTGA--TTT
* * * * **
9319397 TTGAAAAACAAAAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTCATTTCTCGCAATATGA
1 TTG-AAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
*
9319462 GTTGAATT
65 GTTGATTT
* **
9319470 TTGAAAACAGCAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCATTTCTCGCAATATGAG
1 TTGAAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAG
9319535 TTGATTTT
66 TTGA-TTT
* * * *
9319543 TTTAACAAAAGAAATTGAAATTACCTCAGTGTGTCCTGAGGCTCAACTCACCTCTCGCAGTATGA
1 TTGAA-AACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
9319608 GTTGATTTTT
65 GTTGA--TTT
* * * * **
9319618 TTGAAAGACAAAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGA
1 TTGAAA-ACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
*
9319683 GTTGAATT
65 GTTGATTT
* *
9319691 TTGAAAACAGAAATTGAAATTACCTCAGCGTGTCCCGAGACTCAACTCACCTCTCGCAATATGAG
1 TTGAAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAG
9319756 TTGATTT
66 TTGATTT
*
9319763 TTGAAAACAGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAG
1 TTGAAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAG
9319828 TTGATTTTT
66 TTGA--TTT
* * * * **
9319837 TTGAAAAACAAAAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTCATTTCTCGCAATATGA
1 TTG-AAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
*
9319902 GTTGAATT
65 GTTGATTT
* ** *
9319910 TTGAAAACAAAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCATTTCTCGCAATAGGAG
1 TTGAAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAG
9319975 TTGATTTT
66 TTGA-TTT
* * *
9319983 TTTAACAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCTCCTCTCGCAGTATGA
1 TTGAA-AACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
9320048 GTTGATTTTT
65 GTTGA--TTT
* * * * * **
9320058 TTGAAAGACAAAAATTGAAAATACCTCAACGTGTCTTGAAGCTCAACTCATTTCTCGCAATATGA
1 TTGAAA-ACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
*
9320123 GTTGAATT
65 GTTGATTT
** *
9320131 TTGAAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCATTTCTCGTAATATGAG
1 TTGAAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAG
9320196 TTGATTT
66 TTGATTT
9320203 TT
1 TT
9320205 TTGAAAAATA
Statistics
Matches: 922, Mismatches: 89, Indels: 31
0.88 0.09 0.03
Matches are distributed among these distances:
71 2 0.00
72 506 0.55
73 44 0.05
74 130 0.14
75 240 0.26
ACGTcount: A:0.32, C:0.21, G:0.17, T:0.30
Consensus pattern (72 bp):
TTGAAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAG
TTGATTT
Found at i:9319658 original size:221 final size:220
Alignment explanation
Indices: 9319117--9320529 Score: 1932
Period size: 221 Copynumber: 6.3 Consensus size: 220
9319107 TGAAACACAA
* * * *
9319117 AAATTGACAA-TACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTTGCAATATAAGTTGA--TTT
1 AAATTGA-AATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
* ** **
9319179 TTG-AAAACAGAAATTGAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGA
65 TTGAAAAACAAAAATTGAAAATACCTCAGCGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGA
* * * * **
9319243 GTTGATTTTTGAAAATAGAAATTGAGATTACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGC
130 GTTGAATTTTGAAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCATTTCTCGC
* *
9319308 AATATGAGTTGA-TTTTTGAAAATAG
195 AATATGAGTTGATTTTTTTAAAAAAG
* *
9319333 AAATTGAGATTACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTT
1 AAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTT
*
9319398 TGAAAAACAAAAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTCATTTCTCGCAATATGAG
66 TGAAAAACAAAAATTGAAAATACCTCAGCGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAG
*
9319463 TTGAATTTTGAAAACAGCAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCATTTCTCGCA
131 TTGAATTTTGAAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCATTTCTCGCA
9319528 ATATGAGTTGATTTTTTTAACAAAAG
196 ATATGAGTTGATTTTTTTAA-AAAAG
* *
9319554 AAATTGAAATTACCTCAGTGTGTCCTGAGGCTCAACTCACCTCTCGCAGTATGAGTTGATTTTTT
1 AAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTT
* *
9319619 TGAAAGACAAAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAG
66 TGAAAAACAAAAATTGAAAATACCTCAGCGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAG
* * **
9319684 TTGAATTTTGAAAACAGAAATTGAAATTACCTCAGCGTGTCCCGAGACTCAACTCACCTCTCGCA
131 TTGAATTTTGAAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCATTTCTCGCA
* *
9319749 ATATGAGTTGA-TTTTTGAAAACAG
196 ATATGAGTTGATTTTTTTAAAAAAG
*
9319773 AAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTT
1 AAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTT
*
9319838 TGAAAAACAAAAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTCATTTCTCGCAATATGAG
66 TGAAAAACAAAAATTGAAAATACCTCAGCGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAG
*
9319903 TTGAATTTTGAAAACAAAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCATTTCTCGCA
131 TTGAATTTTGAAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCATTTCTCGCA
* *
9319968 ATAGGAGTTGATTTTTTTAACAACAG
196 ATATGAGTTGATTTTTTTAA-AAAAG
* *
9319994 AAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCTCCTCTCGCAGTATGAGTTGATTTTTT
1 AAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTT
* * *
9320059 TGAAAGACAAAAATTGAAAATACCTCAACGTGTCTTGAAGCTCAACTCATTTCTCGCAATATGAG
66 TGAAAAACAAAAATTGAAAATACCTCAGCGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAG
*
9320124 TTGAATTTTGAAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCATTTCTCGTA
131 TTGAATTTTGAAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCATTTCTCGCA
9320189 ATATGAGTTGATTTTTTTGAAAAATAGATTG
196 ATATGAGTTGATTTTTTT--AAAA-A-A--G
9320220 AAACACAAAAATTGACAA-TACCTCAGCGTG-CCTCGAGGCTCAACTCACCTCTCGCAATATGAG
1 --------AAATTGA-AATTACCTCAGCGTGTCCT-GAGGCTCAACTCACCTCTCGCAATATGAG
* * **
9320283 TTGA--TTTTTGAAAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTC
56 TTGATTTTTTTGAAAAACAAAAATTGAAAATACCTCAGCGTGTCTTGAGGCTCAACTCATTTCTC
* * * *
9320346 GCAATATGAGTTG-ATTTCTGAAAAACATAAATTGAACAGAAATTGAAACTACCTCAACTTGTCT
121 GCAATATGAGTTGAATTT-TG---------AA---AACAGAAATTGAAATTACCTCAGCGTGTCC
9320410 TGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTTTTAAAAAGCAG
173 TGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTTTTAAAAA--AG
* ** * *
9320460 AAATTTAGAA-TACCTCAATGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTAATTTTT
1 AAATTGA-AATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
9320524 TTGAAA
65 TTGAAA
9320530 CAGAAATAAA
Statistics
Matches: 1078, Mismatches: 78, Indels: 64
0.88 0.06 0.05
Matches are distributed among these distances:
215 1 0.00
216 53 0.05
218 6 0.01
219 323 0.30
220 21 0.02
221 406 0.38
222 2 0.00
223 2 0.00
224 1 0.00
226 1 0.00
231 4 0.00
232 117 0.11
233 5 0.00
234 59 0.05
235 2 0.00
240 1 0.00
241 3 0.00
242 5 0.00
244 66 0.06
ACGTcount: A:0.32, C:0.21, G:0.17, T:0.30
Consensus pattern (220 bp):
AAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTT
TGAAAAACAAAAATTGAAAATACCTCAGCGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAG
TTGAATTTTGAAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCATTTCTCGCA
ATATGAGTTGATTTTTTTAAAAAAG
Found at i:9319789 original size:440 final size:440
Alignment explanation
Indices: 9318748--9320529 Score: 2278
Period size: 440 Copynumber: 3.9 Consensus size: 440
9318738 AGTGTGTGAT
* * *
9318748 TTGAAGCTCAACTCACCTCTCGCAATATAAGTTGATTTTTTTGAAAACAGAAATTGAAAATACCT
1 TTGAAGCTCAACTCACCTCTCGCAATATGAGTTGA--ATTTTGAAAACAGAAATTGAAATTACCT
* ** ** *
9318813 CAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAA
64 CAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAACAGAAATTGAA
**
9318878 ATTACCTCAGCGTGTCCCGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTTTTGAAAGAT
129 ATTACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTT----G--
* *
9318943 ATAAATGGAAAAGCAGAAATTGAAATTACCTCA--ATGTGCCTTGAGGCTCAACTCACCTCTCGC
188 ----A---AAAA-CAAAAATTGAAAATACCTCAGCATGT--CTTGAGGCTCAACTCACCTCTCGC
* *
9319006 AATATGAGTTGATTTTTGACAAACAGCAATTGAAATTACCTCAGCGTGTCTTGAGGCTCAACTCA
243 AATATGAGTTGAATTTTGA-AAACAGCAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCA
* *
9319071 TTTCTCGTAATATGAGTTGATTTTTGAAAAATAGATTGAAACACAA-AAATTGACAATACCTCAG
307 TTTCTCGCAATATGAGTTGA-TTTT------T---TT--AACAAAAGAAATTGACAATACCTCAG
* * * * *
9319135 CGTGCCCCGAGGCTCAACTCACCTCTTGCAATATAAGTTGA--TTTTTGAAA-ACAGAAATTGAA
360 CGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGACAAAAATTGAA
*
9319197 AATACCTCAGCGTGTC
425 AATACCTCAACGTGTC
** * * * *
9319213 CCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAATAGAAATTGAGATTACCTCA
1 TTGAAGCTCAACTCACCTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCA
* *
9319278 GCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAATAGAAATTGAGAT
66 GCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAACAGAAATTGAAAT
9319343 TACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAACAA
131 TACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAACAA
**
9319408 AAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTG
196 AAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAATTTTG
9319473 AAAACAGCAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCATTTCTCGCAATATGAGTTG
261 AAAACAGCAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCATTTCTCGCAATATGAGTTG
*
9319538 ATTTTTTTAACAAAAGAAATTGA-AATTACCTCAGTGTGTCCTGAGGCTCAACTCACCTCTCGCA
326 ATTTTTTTAACAAAAGAAATTGACAA-TACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCA
*
9319602 GTATGAGTTGATTTTTTTGAAAGACAAAAATTGAAAATACCTCAACGTGTC
390 ATATGAGTTGATTTTTTTGAAAGACAAAAATTGAAAATACCTCAACGTGTC
* **
9319653 TTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCA
1 TTGAAGCTCAACTCACCTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCA
*
9319718 GCGTGTCCCGAGACTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAACAGAAATTGAAAT
66 GCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAACAGAAATTGAAAT
9319783 TACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAACAA
131 TACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAACAA
**
9319848 AAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTG
196 AAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAATTTTG
** *
9319913 AAAACAAAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCATTTCTCGCAATAGGAGTTG
261 AAAACAGCAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCATTTCTCGCAATATGAGTTG
* *
9319978 ATTTTTTTAACAACAGAAATTGA-AATTACCTCAGCGTGTCCTGAGGCTCAACTCTCCTCTCGCA
326 ATTTTTTTAACAAAAGAAATTGACAA-TACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCA
*
9320042 GTATGAGTTGATTTTTTTGAAAGACAAAAATTGAAAATACCTCAACGTGTC
390 ATATGAGTTGATTTTTTTGAAAGACAAAAATTGAAAATACCTCAACGTGTC
**
9320093 TTGAAGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCA
1 TTGAAGCTCAACTCACCTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCA
* ** *
9320158 GCGTGTCCTGAGGCTCAACTCATTTCTCGTAATATGAGTTGATTTTTTTGAAAAATAGATTGAAA
66 GCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-----TT------T---TTGAAA
*
9320223 CACAAAAATTGACAA-TACCTCAGCGTG-CCTCGAGGCTCAACTCACCTCTCGCAATATGAGTTG
117 -ACAGAAATTGA-AATTACCTCAGCGTGTCC-CGAGGCTCAACTCACCTCTCGCAATATGAGTTG
* * *
9320286 A--TTTTTGAAAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCA
179 ATTTTTTTGAAAAACAAAAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTCACCTCTCGCA
* * * *
9320349 ATATGAGTTG-ATTTCTGAAAAACATAAATTGAACAGAAATTGAAACTACCTCAACTTGTCTTGA
244 ATATGAGTTGAATTT-TG-AAAAC----A--G--C---AATTGAAATTACCTCAGCGTGTCCTGA
* *
9320413 GGCTCAACTCATTTCTCGCAATATGAGTTGATTTTTTTAA-AAAGCAGAAATTTAGAATACCTCA
296 GGCTCAACTCATTTCTCGCAATATGAGTTGATTTTTTTAACAAA--AGAAATTGACAATACCTCA
** * *
9320477 ATGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTAATTTTTTTGAAA
359 GCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAA
9320530 CAGAAATAAA
Statistics
Matches: 1201, Mismatches: 76, Indels: 79
0.89 0.06 0.06
Matches are distributed among these distances:
436 8 0.01
437 50 0.04
438 2 0.00
439 9 0.01
440 551 0.46
441 1 0.00
445 2 0.00
447 4 0.00
448 63 0.05
449 58 0.05
450 4 0.00
451 5 0.00
452 4 0.00
453 70 0.06
454 13 0.01
455 56 0.05
456 2 0.00
458 1 0.00
459 1 0.00
463 138 0.11
464 2 0.00
465 93 0.08
466 62 0.05
467 2 0.00
ACGTcount: A:0.32, C:0.20, G:0.17, T:0.31
Consensus pattern (440 bp):
TTGAAGCTCAACTCACCTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCA
GCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAACAGAAATTGAAAT
TACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAACAA
AAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAATTTTG
AAAACAGCAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCATTTCTCGCAATATGAGTTG
ATTTTTTTAACAAAAGAAATTGACAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAA
TATGAGTTGATTTTTTTGAAAGACAAAAATTGAAAATACCTCAACGTGTC
Found at i:9320245 original size:87 final size:86
Alignment explanation
Indices: 9320131--9320291 Score: 245
Period size: 87 Copynumber: 1.9 Consensus size: 86
9320121 GAGTTGAATT
* ** *
9320131 TTGAAAACAGAAATTGAAATTACCTCAGCGTGTCCT-GAGGCTCAACTCATTTCTCGTAATATGA
1 TTGAAAACAAAAATTGAAATTACCTCAGCGTG-CCTCGAGGCTCAACTCACCTCTCGCAATATGA
9320195 GTTGATTTTTTTGAAAAATAGA
65 GTTGATTTTTTTGAAAAATAGA
9320217 TTGAAACACAAAAATTGACAA-TACCTCAGCGTGCCTCGAGGCTCAACTCACCTCTCGCAATATG
1 TTGAAA-ACAAAAATTGA-AATTACCTCAGCGTGCCTCGAGGCTCAACTCACCTCTCGCAATATG
9320281 AGTTGATTTTT
64 AGTTGATTTTT
9320292 GAAAAACAGA
Statistics
Matches: 68, Mismatches: 4, Indels: 5
0.88 0.05 0.06
Matches are distributed among these distances:
86 9 0.13
87 57 0.84
88 2 0.03
ACGTcount: A:0.32, C:0.20, G:0.17, T:0.31
Consensus pattern (86 bp):
TTGAAAACAAAAATTGAAATTACCTCAGCGTGCCTCGAGGCTCAACTCACCTCTCGCAATATGAG
TTGATTTTTTTGAAAAATAGA
Found at i:9320307 original size:87 final size:85
Alignment explanation
Indices: 9320131--9320310 Score: 240
Period size: 87 Copynumber: 2.1 Consensus size: 85
9320121 GAGTTGAATT
* ** *
9320131 TTGAAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCATTTCTCGTAATATGAG
1 TTGAAAACAAAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAG
*
9320196 TTGATTTTTTTGAAAAATAGA
66 TTGA-TTTTTTGAAAAACAGA
9320217 TTGAAACACAAAAATTGACAA-TACCTCAGCGTG-CCTCGAGGCTCAACTCACCTCTCGCAATAT
1 TTGAAA-ACAAAAATTGA-AATTACCTCAGCGTGTCCT-GAGGCTCAACTCACCTCTCGCAATAT
9320280 GAGTTGA-TTTTTGAAAAACAGAAA
63 GAGTTGATTTTTTGAAAAACAG--A
9320304 TTGAAAA
1 TTGAAAA
9320311 TACCTCAGCG
Statistics
Matches: 84, Mismatches: 5, Indels: 10
0.85 0.05 0.10
Matches are distributed among these distances:
85 13 0.15
86 10 0.12
87 59 0.70
88 2 0.02
ACGTcount: A:0.36, C:0.18, G:0.17, T:0.29
Consensus pattern (85 bp):
TTGAAAACAAAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAG
TTGATTTTTTGAAAAACAGA
Found at i:9320336 original size:73 final size:73
Alignment explanation
Indices: 9320217--9320523 Score: 328
Period size: 73 Copynumber: 4.0 Consensus size: 73
9320207 GAAAAATAGA
* * * *
9320217 TTGAAACACAAAAATTGACAATACCTCAGCGTG-CCTCGAGGCTCAACTCACCTCTCGCAATATG
1 TTGAAAAACAGAAATTGAAAATACCTCAACGTGTCCT-GAGGCTCAACTCACCTCTCGCAATATG
9320281 AGTTGATTT
65 AGTTGATTT
*
9320290 TTGAAAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
9320355 GTTGATTT
66 GTTGATTT
* * * * **
9320363 CTGAAAAACATAAATTGAACAGAAATTGAAACTACCTCAACTTGTCTTGAGGCTCAACTCATTTC
1 TTG--------AAA---AACAGAAATTGAAAATACCTCAACGTGTCCTGAGGCTCAACTCACCTC
9320428 TCGCAATATGAGTTGATTTT
55 TCGCAATATGAGTTGA-TTT
* * * * *
9320448 TTTAAAAAGCAGAAATTTAGAATACCTCAATGTGTCTTGAGGCTCAACTCACCTCTCGCAATATG
1 TTGAAAAA-CAGAAATTGAAAATACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCGCAATATG
*
9320513 AGTTAATTT
65 AGTTGATTT
9320522 TT
1 TT
9320524 TTGAAACAGA
Statistics
Matches: 200, Mismatches: 20, Indels: 27
0.81 0.08 0.11
Matches are distributed among these distances:
73 68 0.34
74 10 0.05
75 54 0.27
77 3 0.01
81 3 0.01
84 58 0.29
85 4 0.02
ACGTcount: A:0.33, C:0.21, G:0.16, T:0.30
Consensus pattern (73 bp):
TTGAAAAACAGAAATTGAAAATACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
GTTGATTT
Found at i:9320531 original size:159 final size:156
Alignment explanation
Indices: 9319915--9320536 Score: 771
Period size: 159 Copynumber: 4.0 Consensus size: 156
9319905 GAATTTTGAA
* * *
9319915 AACAAAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCATTTCTCGCAATAGGAGTTGAT
1 AACAAAAATTGAAA-TACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGA-
* * *
9319980 TTTTTTAACAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCTCCTCTCGCAGTA
64 TTTTTTAAAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATA
9320045 TGAGTTGATTTTTTTG------AAA--G
129 TGAGTTGATTTTTTTGAAACATAAATTG
*
9320065 -ACAAAAATTGAAAATACCTCAACGTGTCTTGAAGCTCAACTCATTTCTCGCAATATGAGTTGA-
1 AACAAAAATTG-AAATACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAT
* * ** *
9320128 ATTTTGAAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCATTTCTCGTAATAT
65 TTTTTAAAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATAT
* *
9320193 GAGTTGATTTTTTTGAAAAATAGATTG
130 GAGTTGATTTTTTTGAAACATAAATTG
* * * **
9320220 AAACACAAAAATTGACAATACCTCAGCGTGCCTCGAGGCTCAACTCACCTCTCGCAATATGAGTT
1 --A-ACAAAAATTGA-AATACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTT
* *
9320285 GATTTTTGAAAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAA
62 GATTTTTTAAAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAA
* ***
9320350 TATGAGTTGATTTCTGAAAAACATAAATTG
127 TATGAGTTGATTTTTTTGAAACATAAATTG
* *
9320380 AACAGAAATTGAAACTACCTCAACTTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAT
1 AACAAAAATTGAAA-TACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGA-
* ** *
9320445 TTTTTTAAAAAGCAGAAATTTAGAA-TACCTCAATGTGTCTTGAGGCTCAACTCACCTCTCGCAA
64 TTTTTTAAAAA-CAGAAATTGA-AATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAA
* *
9320509 TATGAGTTAATTTTTTTGAAACAGAAAT
127 TATGAGTTGATTTTTTTGAAACATAAAT
9320537 AAAAACATCA
Statistics
Matches: 403, Mismatches: 50, Indels: 29
0.84 0.10 0.06
Matches are distributed among these distances:
147 72 0.18
149 55 0.14
150 3 0.01
153 2 0.00
155 1 0.00
156 2 0.00
157 53 0.13
158 12 0.03
159 122 0.30
160 81 0.20
ACGTcount: A:0.33, C:0.20, G:0.16, T:0.31
Consensus pattern (156 bp):
AACAAAAATTGAAATACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGATT
TTTTAAAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATG
AGTTGATTTTTTTGAAACATAAATTG
Found at i:9331310 original size:15 final size:17
Alignment explanation
Indices: 9331290--9331321 Score: 50
Period size: 15 Copynumber: 2.0 Consensus size: 17
9331280 TTAGGAAACG
9331290 TACATAA-A-AAATATA
1 TACATAATATAAATATA
9331305 TACATAATATAAATATA
1 TACATAATATAAATATA
9331322 ATATATACAA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
15 7 0.47
16 1 0.07
17 7 0.47
ACGTcount: A:0.62, C:0.06, G:0.00, T:0.31
Consensus pattern (17 bp):
TACATAATATAAATATA
Found at i:9331864 original size:11 final size:11
Alignment explanation
Indices: 9331830--9331871 Score: 50
Period size: 11 Copynumber: 3.9 Consensus size: 11
9331820 AAATCATTTT
9331830 GAAGAGAGAAA
1 GAAGAGAGAAA
* *
9331841 GAA-AAAAAAA
1 GAAGAGAGAAA
*
9331851 GAAGGGAGAAA
1 GAAGAGAGAAA
9331862 GAAGAGAGAA
1 GAAGAGAGAA
9331872 GGGAGGGGGA
Statistics
Matches: 24, Mismatches: 6, Indels: 2
0.75 0.19 0.06
Matches are distributed among these distances:
10 8 0.33
11 16 0.67
ACGTcount: A:0.67, C:0.00, G:0.33, T:0.00
Consensus pattern (11 bp):
GAAGAGAGAAA
Found at i:9332347 original size:18 final size:18
Alignment explanation
Indices: 9332324--9332365 Score: 57
Period size: 18 Copynumber: 2.3 Consensus size: 18
9332314 TCTTGGTTTT
9332324 TTTTTTAGGGGGGTTAGG
1 TTTTTTAGGGGGGTTAGG
***
9332342 TTTTTTTTTGGGGTTAGG
1 TTTTTTAGGGGGGTTAGG
9332360 TTTTTT
1 TTTTTT
9332366 TTGGGGCATT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.07, C:0.00, G:0.33, T:0.60
Consensus pattern (18 bp):
TTTTTTAGGGGGGTTAGG
Found at i:9332363 original size:17 final size:18
Alignment explanation
Indices: 9332333--9332371 Score: 71
Period size: 17 Copynumber: 2.2 Consensus size: 18
9332323 TTTTTTTAGG
9332333 GGGGTTAGGTTTTTTTTT
1 GGGGTTAGGTTTTTTTTT
9332351 GGGGTTAGG-TTTTTTTT
1 GGGGTTAGGTTTTTTTTT
9332368 GGGG
1 GGGG
9332372 CATTTAATGG
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
17 12 0.57
18 9 0.43
ACGTcount: A:0.05, C:0.00, G:0.41, T:0.54
Consensus pattern (18 bp):
GGGGTTAGGTTTTTTTTT
Found at i:9332764 original size:48 final size:48
Alignment explanation
Indices: 9332682--9332862 Score: 238
Period size: 48 Copynumber: 3.8 Consensus size: 48
9332672 TAGGGTTATG
* * *
9332682 TGTGATCCCACGTAAGACCATGTCTGGGACATGGCATTGGCATCGATA
1 TGTGATCCCATGTAAGACCATATCTGAGACATGGCATTGGCATCGATA
* * *
9332730 TGTGATCCCATGTAAGACCATATCTGAGATATGGCATTGGAATCGACA
1 TGTGATCCCATGTAAGACCATATCTGAGACATGGCATTGGCATCGATA
*
9332778 TGTGATCCCATGTAAGACCATATCT-AGGATATGGCATTGGCATCGATA
1 TGTGATCCCATGTAAGACCATATCTGA-GACATGGCATTGGCATCGATA
** * * *
9332826 TGTGATTTCATGTAAGACTATGTCTGGGACATGGCAT
1 TGTGATCCCATGTAAGACCATATCTGAGACATGGCAT
9332863 CGATATGAGA
Statistics
Matches: 117, Mismatches: 14, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
47 1 0.01
48 116 0.99
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.29
Consensus pattern (48 bp):
TGTGATCCCATGTAAGACCATATCTGAGACATGGCATTGGCATCGATA
Found at i:9332821 original size:96 final size:96
Alignment explanation
Indices: 9332682--9332862 Score: 272
Period size: 96 Copynumber: 1.9 Consensus size: 96
9332672 TAGGGTTATG
* *
9332682 TGTGATCCCACGTAAGACCATGTCTGGGACATGGCATTGGCATCGATATGTGATCCCATGTAAGA
1 TGTGATCCCACGTAAGACCATATCTAGGACATGGCATTGGCATCGATATGTGATCCCATGTAAGA
*
9332747 CCATATCTGAGATATGGCATTGGAATCGACA
66 CCATATCTGAGACATGGCATTGGAATCGACA
* * **
9332778 TGTGATCCCATGTAAGACCATATCTAGGATATGGCATTGGCATCGATATGTGATTTCATGTAAGA
1 TGTGATCCCACGTAAGACCATATCTAGGACATGGCATTGGCATCGATATGTGATCCCATGTAAGA
* * *
9332843 CTATGTCTGGGACATGGCAT
66 CCATATCTGAGACATGGCAT
9332863 CGATATGAGA
Statistics
Matches: 75, Mismatches: 10, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
96 75 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.29
Consensus pattern (96 bp):
TGTGATCCCACGTAAGACCATATCTAGGACATGGCATTGGCATCGATATGTGATCCCATGTAAGA
CCATATCTGAGACATGGCATTGGAATCGACA
Found at i:9338237 original size:32 final size:32
Alignment explanation
Indices: 9338201--9338261 Score: 113
Period size: 32 Copynumber: 1.9 Consensus size: 32
9338191 ATATAAAATA
9338201 AGTTGCAACTAACAATATATATTAACATAGCG
1 AGTTGCAACTAACAATATATATTAACATAGCG
*
9338233 AGTTGCAACTAACAATATATTTTAACATA
1 AGTTGCAACTAACAATATATATTAACATA
9338262 AAATTTATCT
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 28 1.00
ACGTcount: A:0.44, C:0.15, G:0.10, T:0.31
Consensus pattern (32 bp):
AGTTGCAACTAACAATATATATTAACATAGCG
Found at i:9338413 original size:23 final size:23
Alignment explanation
Indices: 9338363--9338413 Score: 59
Period size: 23 Copynumber: 2.2 Consensus size: 23
9338353 TATTTAAAAA
*
9338363 ATATTTATATTTATAATTTACAT
1 ATATTTATAATTATAATTTACAT
* *
9338386 TTATTTTTAATTATATATTTA-AT
1 ATATTTATAATTATA-ATTTACAT
9338409 ATATT
1 ATATT
9338414 AATACTAACA
Statistics
Matches: 23, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
23 18 0.78
24 5 0.22
ACGTcount: A:0.37, C:0.02, G:0.00, T:0.61
Consensus pattern (23 bp):
ATATTTATAATTATAATTTACAT
Found at i:9343600 original size:5 final size:6
Alignment explanation
Indices: 9343583--9343612 Score: 51
Period size: 6 Copynumber: 4.8 Consensus size: 6
9343573 TTGTCTTCTC
9343583 TCTTTT TCTTTT TCTTTT TCATTTT TCTTT
1 TCTTTT TCTTTT TCTTTT TC-TTTT TCTTT
9343613 GGTTAGATTT
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
6 17 0.74
7 6 0.26
ACGTcount: A:0.03, C:0.17, G:0.00, T:0.80
Consensus pattern (6 bp):
TCTTTT
Found at i:9343600 original size:12 final size:13
Alignment explanation
Indices: 9343583--9343612 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
9343573 TTGTCTTCTC
9343583 TCTTTTTC-TTTT
1 TCTTTTTCATTTT
9343595 TCTTTTTCATTTT
1 TCTTTTTCATTTT
9343608 TCTTT
1 TCTTT
9343613 GGTTAGATTT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 8 0.47
13 9 0.53
ACGTcount: A:0.03, C:0.17, G:0.00, T:0.80
Consensus pattern (13 bp):
TCTTTTTCATTTT
Found at i:9352042 original size:223 final size:223
Alignment explanation
Indices: 9351654--9352099 Score: 567
Period size: 223 Copynumber: 2.0 Consensus size: 223
9351644 AGAATAACAA
* * * *
9351654 TGTAACATCTCTTTTTCAGTGAAATCAGAACAGTGGTTTCAGGACCACAAATCCAAAGTCGGAAG
1 TGTAACAGCTCGTTTTCAGTGAAATCAAAACAGTGGTTTCAGGACCACAAATCCAAAGTCGAAAG
* *
9351719 AAAATTTATTTTAATATTATTTTATGGTTTACAGTATGATAAAAATATCGTATGAAAATTTCGTT
66 AAAATTTATTTTAATATTATTTCATGGTCTACAGTATGATAAAAATATCGTATGAAAATTTCGTT
* * * *
9351784 AAGAAATTTTACCGTTTACATGCCTAGCTTGATAAAAAGGACTAAATTATATAAAGTGCAAAAGT
131 AAGAAATTTTACCGTTTACATGCCTAGCTTGATAAAAAGGACCAAATTACATAAAATACAAAAGT
*
9351849 TAAATTCTAGTAGCTAAAGATATCAAAT
196 TAAATTCTAGTAGCTAAAGATACCAAAT
* * * **
9351877 TGTAACAGCTCGTTTTCAGTGAATTTAAAATAGTGGTTTCAGGACCACAAATCTGAA-TCTGAAA
1 TGTAACAGCTCGTTTTCAGTGAAATCAAAACAGTGGTTTCAGGACCACAAATCCAAAGTC-GAAA
* * * * *
9351941 G-AAATATTATTTTAATATTATTTCATGGTCTGCATTATGATAGAACTATCGTATGAAAATTTTG
65 GAAAAT-TTATTTTAATATTATTTCATGGTCTACAGTATGATAAAAATATCGTATGAAAATTTCG
* * * * * *
9352005 TTAAGAAATTTTACTGATTT-CATGTCTA-ATCTGATAAAAATGACCAAATTGCGTAAAATACAA
129 TTAAGAAATTTTACCG-TTTACATGCCTAGCT-TGATAAAAAGGACCAAATTACATAAAATACAA
* *
9352068 AAGTTGAATTCTAGTAGCTAAAGGTACCAAAT
192 AAGTTAAATTCTAGTAGCTAAAGATACCAAAT
9352100 AGCTATGGAA
Statistics
Matches: 190, Mismatches: 29, Indels: 8
0.84 0.13 0.04
Matches are distributed among these distances:
222 7 0.04
223 180 0.95
224 3 0.02
ACGTcount: A:0.39, C:0.12, G:0.15, T:0.34
Consensus pattern (223 bp):
TGTAACAGCTCGTTTTCAGTGAAATCAAAACAGTGGTTTCAGGACCACAAATCCAAAGTCGAAAG
AAAATTTATTTTAATATTATTTCATGGTCTACAGTATGATAAAAATATCGTATGAAAATTTCGTT
AAGAAATTTTACCGTTTACATGCCTAGCTTGATAAAAAGGACCAAATTACATAAAATACAAAAGT
TAAATTCTAGTAGCTAAAGATACCAAAT
Found at i:9352688 original size:24 final size:25
Alignment explanation
Indices: 9352661--9352714 Score: 65
Period size: 24 Copynumber: 2.2 Consensus size: 25
9352651 CCCCATAATA
*
9352661 GCTCTCATGAGCACCCTAATAT-TG
1 GCTCTCATAAGCACCCTAATATATG
* **
9352685 GCTCTCTTAAGCTTCCTAATATATG
1 GCTCTCATAAGCACCCTAATATATG
9352710 GCTCT
1 GCTCT
9352715 TACGAGTTTC
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
24 18 0.72
25 7 0.28
ACGTcount: A:0.22, C:0.28, G:0.15, T:0.35
Consensus pattern (25 bp):
GCTCTCATAAGCACCCTAATATATG
Found at i:9352820 original size:25 final size:25
Alignment explanation
Indices: 9352792--9352868 Score: 86
Period size: 25 Copynumber: 3.1 Consensus size: 25
9352782 CACACCACAA
* *
9352792 CTCTTATGAGCGTCCCGATAATTGG
1 CTCTTATGAGCTTCCTGATAATTGG
* *
9352817 CTCTCT-TGAGCTTCCTGTTTA-TGG
1 CTCT-TATGAGCTTCCTGATAATTGG
*
9352841 CTCGTATGAGCTTCCTGATAATTGG
1 CTCTTATGAGCTTCCTGATAATTGG
9352866 CTC
1 CTC
9352869 GTAAGGGCTT
Statistics
Matches: 42, Mismatches: 7, Indels: 6
0.76 0.13 0.11
Matches are distributed among these distances:
23 1 0.02
24 19 0.45
25 21 0.50
26 1 0.02
ACGTcount: A:0.16, C:0.25, G:0.22, T:0.38
Consensus pattern (25 bp):
CTCTTATGAGCTTCCTGATAATTGG
Found at i:9352891 original size:25 final size:25
Alignment explanation
Indices: 9352824--9352892 Score: 79
Period size: 25 Copynumber: 2.8 Consensus size: 25
9352814 TGGCTCTCTT
* *
9352824 GAGCTTCCTGTT-TATGGCTCGTAT
1 GAGCTTCCTATTATATGGCTCGTAA
*
9352848 GAGCTTCCTGATAAT-TGGCTCGTAA
1 GAGCTTCCT-ATTATATGGCTCGTAA
*
9352873 GGGCTTCCTATTATATGGCT
1 GAGCTTCCTATTATATGGCT
9352893 TAAAAGAGCT
Statistics
Matches: 37, Mismatches: 5, Indels: 5
0.79 0.11 0.11
Matches are distributed among these distances:
24 13 0.35
25 23 0.62
26 1 0.03
ACGTcount: A:0.17, C:0.20, G:0.25, T:0.38
Consensus pattern (25 bp):
GAGCTTCCTATTATATGGCTCGTAA
Found at i:9357294 original size:19 final size:20
Alignment explanation
Indices: 9357254--9357296 Score: 63
Period size: 19 Copynumber: 2.2 Consensus size: 20
9357244 GAAATACATT
*
9357254 TGTA-AAAATAATAATCATA
1 TGTATAAAATAATAATCACA
9357273 TGTATAAAATAATAAT-ACA
1 TGTATAAAATAATAATCACA
9357292 TGTAT
1 TGTAT
9357297 TGCTTATTAT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
19 11 0.50
20 11 0.50
ACGTcount: A:0.53, C:0.05, G:0.07, T:0.35
Consensus pattern (20 bp):
TGTATAAAATAATAATCACA
Found at i:9357353 original size:22 final size:22
Alignment explanation
Indices: 9357330--9357378 Score: 62
Period size: 22 Copynumber: 2.2 Consensus size: 22
9357320 ATTATATTAT
*
9357330 AACATAATAATAATAATATAATA
1 AACATAA-AATAAAAATATAATA
* *
9357353 AACATAAAATAAAAATAAAAGA
1 AACATAAAATAAAAATATAATA
9357375 AACA
1 AACA
9357379 AAAGAATAGA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
22 16 0.70
23 7 0.30
ACGTcount: A:0.71, C:0.06, G:0.02, T:0.20
Consensus pattern (22 bp):
AACATAAAATAAAAATATAATA
Found at i:9362695 original size:24 final size:25
Alignment explanation
Indices: 9362651--9362704 Score: 65
Period size: 24 Copynumber: 2.2 Consensus size: 25
9362641 CCGATAATAA
9362651 CTCTCTTGAGCATCCCAATAT-TGG
1 CTCTCTTGAGCATCCCAATATATGG
* **
9362675 CTCTCTTGAGCTTCCTGATATATGG
1 CTCTCTTGAGCATCCCAATATATGG
*
9362700 ATCTC
1 CTCTC
9362705 ACGAGTTTTG
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
24 18 0.72
25 7 0.28
ACGTcount: A:0.19, C:0.28, G:0.17, T:0.37
Consensus pattern (25 bp):
CTCTCTTGAGCATCCCAATATATGG
Found at i:9365513 original size:25 final size:25
Alignment explanation
Indices: 9365485--9365553 Score: 66
Period size: 27 Copynumber: 2.7 Consensus size: 25
9365475 CCCAATAATT
9365485 GGCTCTCTAGAGCTTCCTAATTAAA
1 GGCTCTCTAGAGCTTCCTAATTAAA
* * * *
9365510 GGCTCTTTCATGAACTTCCTGATTAAT
1 GGCTCTCT-A-GAGCTTCCTAATTAAA
**
9365537 GGCTCTCCGGAGCTTCC
1 GGCTCTCTAGAGCTTCC
9365554 CGATATTTGG
Statistics
Matches: 34, Mismatches: 8, Indels: 4
0.74 0.17 0.09
Matches are distributed among these distances:
25 14 0.41
26 1 0.03
27 19 0.56
ACGTcount: A:0.20, C:0.28, G:0.19, T:0.33
Consensus pattern (25 bp):
GGCTCTCTAGAGCTTCCTAATTAAA
Found at i:9368226 original size:25 final size:25
Alignment explanation
Indices: 9368198--9368290 Score: 105
Period size: 25 Copynumber: 3.7 Consensus size: 25
9368188 CCACAACTCT
*
9368198 CATGAGCTTCCCGATATTTGGCTCG
1 CATGAGCTTCCCGATATTTGGCTCA
* *
9368223 CATGAGCTTCCCGATATTTGGGTCT
1 CATGAGCTTCCCGATATTTGGCTCA
* * * * *
9368248 CATAAGCTTTCCGTTACTTAGCTCA
1 CATGAGCTTCCCGATATTTGGCTCA
*
9368273 CATGAGCTTCCCGTTATT
1 CATGAGCTTCCCGATATT
9368291 CAGCTCGGAA
Statistics
Matches: 56, Mismatches: 12, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
25 56 1.00
ACGTcount: A:0.18, C:0.27, G:0.19, T:0.35
Consensus pattern (25 bp):
CATGAGCTTCCCGATATTTGGCTCA
Found at i:9368256 original size:50 final size:50
Alignment explanation
Indices: 9368195--9368290 Score: 129
Period size: 50 Copynumber: 1.9 Consensus size: 50
9368185 ACACCACAAC
* * * *
9368195 TCTCATGAGCTTCCCGATATTTGGCTCGCATGAGCTTCCCGATATTTGGG
1 TCTCATAAGCTTCCCGATACTTAGCTCACATGAGCTTCCCGATATTTGGG
* * *
9368245 TCTCATAAGCTTTCCGTTACTTAGCTCACATGAGCTTCCCGTTATT
1 TCTCATAAGCTTCCCGATACTTAGCTCACATGAGCTTCCCGATATT
9368291 CAGCTCGGAA
Statistics
Matches: 39, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
50 39 1.00
ACGTcount: A:0.18, C:0.27, G:0.19, T:0.36
Consensus pattern (50 bp):
TCTCATAAGCTTCCCGATACTTAGCTCACATGAGCTTCCCGATATTTGGG
Found at i:9376692 original size:478 final size:478
Alignment explanation
Indices: 9375733--9376777 Score: 1765
Period size: 478 Copynumber: 2.2 Consensus size: 478
9375723 GGCCAAGTTT
* * *
9375733 TTCTTCTCAGCTTCTG-CAGTCCTCAGCTTTTCAGCAAGATCATTCTTCTCTTGAGCTACTGCCT
1 TTCTTATCAGCTTCAGTCA-TCCTCAGCTTTTTAGCAAGATCATTCTTCTCTTGAGCTACTGCCT
*
9375797 GCATCATTTAAGTTTTCACCTCAGTAAGATGACTCCTCAAAGGCAAAGGGCAGTTGGAAACATTT
65 GCATCATTTAAGTTTTCACCTCAGTAAGATGACTCCTCAAAGGCAAAGGGCACTTGGAAACATTT
* * * *
9375862 TACAGCCAATAGAGGCTTTTGTCCTTCTGCGAAGATACTTTAGCAAGGACAACCAGGTCAGATGC
130 TACAGCCAATAGAGGCCTCTGTCCTTCTGCGAAGATAATCTAGCAAGGACAACCAGGTCAGATGC
* *
9375927 AAAACAAAATTGAACTGAATGTGAAGTTTTAGATTTATGGTAGAAAGAACCATTATCATAATTAA
195 AAAACAAAATTGAACTGAATGTGAAGTTTTAGATTTACGGTAGAAAGAACCATTAACATAATTAA
* *
9375992 GACCCAGAGAAAGTAAGAAGAAACAGACCTGCAAACTATTCAATTTCACTTCCAGCTCATCATTA
260 GACCCAGAGAAAGTAAGAAGAAACAAACCTGCAAACTATTCAACTTCACTTCCAGCTCATCATTA
9376057 TAGTTCTTACAGCGTCCAAGCTCCTCTTCCTTCTCCTGTTTCTCTCTTTTGATCTGCCTAAGTTC
325 TAGTTCTTACAGCGTCCAAGCTCCTCTTCCTTCTCCTGTTTCTCTCTTTTGATCTGCCTAAGTTC
*
9376122 TTGCTTCAACGTCTGCACTTCATTTGAAAGTGACTGTTGTTCTGCTTTTTGAGCTTCAACTTCTG
390 TTGCTTCAACATCTGCACTTCATTTGAAAGTGACTGTTGTTCTGCTTTTTGAGCTTCAACTTCTG
* *
9376187 TTCTCAATTCTTCGACGAAATCTG
455 TTCTCAATTCTTCAACGAAAGCTG
*
9376211 TTCTTATCAGCTTCAGTCTTCCTCAGCTTTTTAGCAAGATCATTCTTCTCTTGAGCTACTGCCTG
1 TTCTTATCAGCTTCAGTCATCCTCAGCTTTTTAGCAAGATCATTCTTCTCTTGAGCTACTGCCTG
9376276 CATCATTTAAGTTTTCACCTCAGTAAGATGACTCCTCAAAGGCAAAGGGCACTTGGAAACATTTT
66 CATCATTTAAGTTTTCACCTCAGTAAGATGACTCCTCAAAGGCAAAGGGCACTTGGAAACATTTT
* *
9376341 ACAGCCTATAGAGGCCTCTGTCCTTCTGCGAGGATAATCTAGCAAGGACAACCAGGTCAGATGCA
131 ACAGCCAATAGAGGCCTCTGTCCTTCTGCGAAGATAATCTAGCAAGGACAACCAGGTCAGATGCA
*
9376406 AAACAAAAATTGAACTGAATTTGAAGTTTTAGATTTACGGTAGAAAGAACCATTAACATAACTT-
196 AAAC-AAAATTGAACTGAATGTGAAGTTTTAGATTTACGGTAGAAAGAACCATTAACATAA-TTA
* *
9376470 GGATCCAGAGAAAGTAAGAAGAAACAAACCTGCAAACTATTCAACTTCACTTCCAGCTCATCATT
259 AGACCCAGAGAAAGTAAGAAGAAACAAACCTGCAAACTATTCAACTTCACTTCCAGCTCATCATT
** *
9376535 ATAGTTCTTACAGCGTCCAATTTCCTCTTCCTTCTCCTGTTTCTCTCTTTTGATCTGCTTAAGTT
324 ATAGTTCTTACAGCGTCCAAGCTCCTCTTCCTTCTCCTGTTTCTCTCTTTTGATCTGCCTAAGTT
*
9376600 CTTGCTTCAACATCTGGACTTCATTTGAAAGTGACTGTTGTTCTGCTTTTTGAGCTTCAACTTCT
389 CTTGCTTCAACATCTGCACTTCATTTGAAAGTGACTGTTGTTCTGCTTTTTGAGCTTCAACTTCT
*
9376665 GTTCTCAATTCTTCAACG-AGGCTG
454 GTTCTCAATTCTTCAACGAAAGCTG
* * * *
9376689 TTCTTATCAGCTTCGGTGATCCTCAGCTTTTTAGCAAGATAATTCTTCTCTTGAGCTACTTCCTG
1 TTCTTATCAGCTTCAGTCATCCTCAGCTTTTTAGCAAGATCATTCTTCTCTTGAGCTACTGCCTG
9376754 CATCATTTAAGTTTT-ACCTCAGTA
66 CATCATTTAAGTTTTCACCTCAGTA
9376778 CGATAAACAA
Statistics
Matches: 533, Mismatches: 31, Indels: 7
0.93 0.05 0.01
Matches are distributed among these distances:
477 9 0.02
478 265 0.50
479 257 0.48
480 2 0.00
ACGTcount: A:0.27, C:0.23, G:0.16, T:0.34
Consensus pattern (478 bp):
TTCTTATCAGCTTCAGTCATCCTCAGCTTTTTAGCAAGATCATTCTTCTCTTGAGCTACTGCCTG
CATCATTTAAGTTTTCACCTCAGTAAGATGACTCCTCAAAGGCAAAGGGCACTTGGAAACATTTT
ACAGCCAATAGAGGCCTCTGTCCTTCTGCGAAGATAATCTAGCAAGGACAACCAGGTCAGATGCA
AAACAAAATTGAACTGAATGTGAAGTTTTAGATTTACGGTAGAAAGAACCATTAACATAATTAAG
ACCCAGAGAAAGTAAGAAGAAACAAACCTGCAAACTATTCAACTTCACTTCCAGCTCATCATTAT
AGTTCTTACAGCGTCCAAGCTCCTCTTCCTTCTCCTGTTTCTCTCTTTTGATCTGCCTAAGTTCT
TGCTTCAACATCTGCACTTCATTTGAAAGTGACTGTTGTTCTGCTTTTTGAGCTTCAACTTCTGT
TCTCAATTCTTCAACGAAAGCTG
Found at i:9381151 original size:6 final size:6
Alignment explanation
Indices: 9381135--9381171 Score: 65
Period size: 6 Copynumber: 6.0 Consensus size: 6
9381125 GGAAAGCGTC
9381135 AGGGCCA AGGGCA AGGGCA AGGGCA AGGGCA AGGGCA
1 AGGG-CA AGGGCA AGGGCA AGGGCA AGGGCA AGGGCA
9381172 TCGCTTCCTG
Statistics
Matches: 30, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
6 26 0.87
7 4 0.13
ACGTcount: A:0.32, C:0.19, G:0.49, T:0.00
Consensus pattern (6 bp):
AGGGCA
Found at i:9388396 original size:43 final size:43
Alignment explanation
Indices: 9388304--9388499 Score: 272
Period size: 43 Copynumber: 4.6 Consensus size: 43
9388294 TTCGACGAAC
* * *
9388304 TCGCACCCTTAGTGCTAATTAATTAACC-AAGCTATAATTGTA
1 TCGCACACTTAGTGCCAATTAATTAGCCGAAGCTATAATTGTA
*
9388346 TCGCACACTTAGTGCCAATTAATTAGCCGAAGCCATAATTGTA
1 TCGCACACTTAGTGCCAATTAATTAGCCGAAGCTATAATTGTA
* *
9388389 TCGCACACTTAGTGCCAATTAATTAGCTGAAGCTATAATTATA
1 TCGCACACTTAGTGCCAATTAATTAGCCGAAGCTATAATTGTA
* *
9388432 TCGCACACTTAGTGCCAACTT-AGTAGCCGAAACTATAATTGTA
1 TCGCACACTTAGTGCCAA-TTAATTAGCCGAAGCTATAATTGTA
*
9388475 TCGCACACTTAGCGCC-ATTACATTA
1 TCGCACACTTAGTGCCAATTA-ATTA
9388500 AACTGAACTT
Statistics
Matches: 137, Mismatches: 13, Indels: 7
0.87 0.08 0.04
Matches are distributed among these distances:
41 2 0.01
42 26 0.19
43 107 0.78
44 2 0.01
ACGTcount: A:0.33, C:0.23, G:0.14, T:0.30
Consensus pattern (43 bp):
TCGCACACTTAGTGCCAATTAATTAGCCGAAGCTATAATTGTA
Found at i:9394548 original size:43 final size:42
Alignment explanation
Indices: 9394459--9394611 Score: 175
Period size: 43 Copynumber: 3.6 Consensus size: 42
9394449 TTCGACGAAC
* * * * *
9394459 TCGCACACTTAGTTCTAATTAATTAACCAAGCTATAATTGTA
1 TCGCACACTTAGTGCCAATTAATTAGCGAAGCTATAATTATA
9394501 TCGCACACTTAGTGCCAATTAATTAGCTGAAGCTATAATTATA
1 TCGCACACTTAGTGCCAATTAATTAGC-GAAGCTATAATTATA
* * *
9394544 TCGCACACTTAGTGCCAACTT-AGTAGCCGAAACTATAATTTTA
1 TCGCACACTTAGTGCCAA-TTAATTAG-CGAAGCTATAATTATA
*
9394587 TCGCACACTTAGCGCC-ATTACATTA
1 TCGCACACTTAGTGCCAATTA-ATTA
9394612 AACTGAACTT
Statistics
Matches: 96, Mismatches: 10, Indels: 9
0.83 0.09 0.08
Matches are distributed among these distances:
41 2 0.02
42 25 0.26
43 66 0.69
44 3 0.03
ACGTcount: A:0.33, C:0.22, G:0.12, T:0.32
Consensus pattern (42 bp):
TCGCACACTTAGTGCCAATTAATTAGCGAAGCTATAATTATA
Found at i:9395971 original size:5 final size:6
Alignment explanation
Indices: 9395958--9396004 Score: 67
Period size: 6 Copynumber: 7.5 Consensus size: 6
9395948 ATAATTTAAT
*
9395958 AAATAA AAATAA AAATCTAA AACTAA AAATAA AAATAA AAATAA AAA
1 AAATAA AAATAA AAA--TAA AAATAA AAATAA AAATAA AAATAA AAA
9396005 ACATATAATT
Statistics
Matches: 37, Mismatches: 2, Indels: 4
0.86 0.05 0.09
Matches are distributed among these distances:
6 32 0.86
8 5 0.14
ACGTcount: A:0.79, C:0.04, G:0.00, T:0.17
Consensus pattern (6 bp):
AAATAA
Done.