Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A06
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 115140250
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2234201 characters in sequence are not A, C, G, or T
File 322 of 345
Found at i:108363381 original size:39 final size:39
Alignment explanation
Indices: 108363337--108363437 Score: 148
Period size: 39 Copynumber: 2.6 Consensus size: 39
108363327 GCTCTGATGA
* * *
108363337 GCTTCAATTAGCCTTTGGGCTTCCGTTTAGCACTTGTGT
1 GCTTCAATTAGCCTTCGGGCTTCCGTTTAGCACTTATAT
108363376 GCTTCAATTAGCCTTCGGGCTTCCGTTTAGCACTTATAT
1 GCTTCAATTAGCCTTCGGGCTTCCGTTTAGCACTTATAT
** *
108363415 GCTTCAGCTAGACTTCGGGCTTC
1 GCTTCAATTAGCCTTCGGGCTTC
108363438 AAATCACAAT
Statistics
Matches: 56, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
39 56 1.00
ACGTcount: A:0.15, C:0.26, G:0.22, T:0.38
Consensus pattern (39 bp):
GCTTCAATTAGCCTTCGGGCTTCCGTTTAGCACTTATAT
Found at i:108366064 original size:8 final size:8
Alignment explanation
Indices: 108366051--108366091 Score: 61
Period size: 8 Copynumber: 5.5 Consensus size: 8
108366041 ATTTAAGAAA
108366051 ATATTATT
1 ATATTATT
108366059 ATATTA-T
1 ATATTATT
108366066 -TA-TATT
1 ATATTATT
108366072 ATATTATT
1 ATATTATT
108366080 ATATTATT
1 ATATTATT
108366088 ATAT
1 ATAT
108366092 GATATTAATT
Statistics
Matches: 30, Mismatches: 0, Indels: 6
0.83 0.00 0.17
Matches are distributed among these distances:
5 2 0.07
6 3 0.10
7 3 0.10
8 22 0.73
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (8 bp):
ATATTATT
Found at i:108366073 original size:13 final size:13
Alignment explanation
Indices: 108366055--108366086 Score: 64
Period size: 13 Copynumber: 2.5 Consensus size: 13
108366045 AAGAAAATAT
108366055 TATTATATTATTA
1 TATTATATTATTA
108366068 TATTATATTATTA
1 TATTATATTATTA
108366081 TATTAT
1 TATTAT
108366087 TATATGATAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 19 1.00
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (13 bp):
TATTATATTATTA
Found at i:108366075 original size:21 final size:21
Alignment explanation
Indices: 108366051--108366098 Score: 87
Period size: 21 Copynumber: 2.3 Consensus size: 21
108366041 ATTTAAGAAA
*
108366051 ATATTATTATATTATTATATT
1 ATATTATTATATTATTATATG
108366072 ATATTATTATATTATTATATG
1 ATATTATTATATTATTATATG
108366093 ATATTA
1 ATATTA
108366099 ATTAAAATAA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 26 1.00
ACGTcount: A:0.40, C:0.00, G:0.02, T:0.58
Consensus pattern (21 bp):
ATATTATTATATTATTATATG
Found at i:108366096 original size:13 final size:12
Alignment explanation
Indices: 108366052--108366098 Score: 57
Period size: 11 Copynumber: 4.2 Consensus size: 12
108366042 TTTAAGAAAA
108366052 TATTAT-TATAT
1 TATTATATATAT
108366063 TATTATAT-TA-
1 TATTATATATAT
108366073 TATTAT-TATAT
1 TATTATATATAT
108366084 TATTATATGATAT
1 TATTATAT-ATAT
108366097 TA
1 TA
108366099 ATTAAAATAA
Statistics
Matches: 31, Mismatches: 0, Indels: 8
0.79 0.00 0.21
Matches are distributed among these distances:
9 1 0.03
10 8 0.26
11 14 0.45
12 2 0.06
13 6 0.19
ACGTcount: A:0.38, C:0.00, G:0.02, T:0.60
Consensus pattern (12 bp):
TATTATATATAT
Found at i:108368377 original size:19 final size:20
Alignment explanation
Indices: 108368340--108368377 Score: 51
Period size: 19 Copynumber: 1.9 Consensus size: 20
108368330 AGAAGGACAA
*
108368340 TATGATTAAATTATGATGTG
1 TATGATTAAATGATGATGTG
*
108368360 TATG-TTAAATGATTATGT
1 TATGATTAAATGATGATGT
108368378 AAATGTTCGT
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
19 12 0.75
20 4 0.25
ACGTcount: A:0.34, C:0.00, G:0.18, T:0.47
Consensus pattern (20 bp):
TATGATTAAATGATGATGTG
Found at i:108380736 original size:12 final size:12
Alignment explanation
Indices: 108380674--108380737 Score: 53
Period size: 12 Copynumber: 5.4 Consensus size: 12
108380664 AATATATAAT
*
108380674 AAAATAATAATG
1 AAAATAATAAAG
* * *
108380686 AGAACAA-AAAC
1 AAAATAATAAAG
108380697 AAAATAA-AAATG
1 AAAATAATAAA-G
108380709 -AAATAAATAAAG
1 AAAAT-AATAAAG
108380721 AAAATAATAAAG
1 AAAATAATAAAG
108380733 AAAAT
1 AAAAT
108380738 TCTAATGAAA
Statistics
Matches: 41, Mismatches: 7, Indels: 8
0.73 0.12 0.14
Matches are distributed among these distances:
11 14 0.34
12 20 0.49
13 7 0.17
ACGTcount: A:0.73, C:0.03, G:0.08, T:0.16
Consensus pattern (12 bp):
AAAATAATAAAG
Found at i:108380824 original size:3 final size:3
Alignment explanation
Indices: 108380816--108381144 Score: 242
Period size: 3 Copynumber: 109.7 Consensus size: 3
108380806 ATGGTTTAAA
* * * * *
108380816 AAT AAT AAT GAT AAT AAA AAT AAT AGT AAT AGT AAT AAT AAT ACT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
* ** *
108380864 GAT AAT AAT AGC AAT AAT AAT AAT AAT AAT AAT AGA- AAT CAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A-AT AAT AAT AAT
* * * *
108380909 AGT AAT AAT AAC AAT AAT AAT AAT AAT AAAT AAT AAAC AAT AAT ACT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT -AAT AAT -AAT AAT AAT AAT
* * * * ** *
108380956 AGT AA- AAT AAT GAT AAT AGT AAT AAA AAT AA- AA- AAT AGC AAT GAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
* * * * *
108381001 AAT AAT AAT ATT GAT AAT AAAT AAT AAT AGT AAGA AAT AAT AAT TAT
1 AAT AAT AAT AAT AAT AAT -AAT AAT AAT AAT AA-T AAT AAT AAT AAT
* * **
108381048 AGAA AAT AAT AAT AAT -AT ATT AAT AAT AAT AA- AAT CAGG AAT AAT
1 A-AT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT -AAT AAT AAT
* * *
108381093 AAT AAC AAC AAT AAT -AT AAAT ACT AAT -AT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT -AAT AAT AAT AAT AAT AAT AAT AAT AAT
108381137 AAT AAT AA
1 AAT AAT AA
108381145 GAAGAAGAAG
Statistics
Matches: 250, Mismatches: 61, Indels: 30
0.73 0.18 0.09
Matches are distributed among these distances:
2 15 0.06
3 219 0.88
4 16 0.06
ACGTcount: A:0.62, C:0.03, G:0.05, T:0.29
Consensus pattern (3 bp):
AAT
Found at i:108381023 original size:19 final size:18
Alignment explanation
Indices: 108381001--108381079 Score: 69
Period size: 19 Copynumber: 4.4 Consensus size: 18
108380991 TAGCAATGAT
108381001 AATAATAATATTGATAATA
1 AATAATAATA-TGATAATA
*
108381020 AATAATAATA-G-TAAGA
1 AATAATAATATGATAATA
*
108381036 AATAATAATTATAGAAAAT-
1 AATAATAA-TAT-GATAATA
108381055 AATAATAATAT-ATTAAT-
1 AATAATAATATGA-TAATA
108381072 AATAATAA
1 AATAATAA
108381080 AATCAGGAAT
Statistics
Matches: 51, Mismatches: 4, Indels: 12
0.76 0.06 0.18
Matches are distributed among these distances:
16 13 0.25
17 14 0.27
18 3 0.06
19 19 0.37
20 2 0.04
ACGTcount: A:0.62, C:0.00, G:0.05, T:0.33
Consensus pattern (18 bp):
AATAATAATATGATAATA
Found at i:108381149 original size:3 final size:3
Alignment explanation
Indices: 108381143--108381180 Score: 76
Period size: 3 Copynumber: 12.7 Consensus size: 3
108381133 TAATAATAAT
108381143 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AA
1 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AA
108381181 ACAAAAAAAG
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 35 1.00
ACGTcount: A:0.68, C:0.00, G:0.32, T:0.00
Consensus pattern (3 bp):
AAG
Found at i:108382081 original size:18 final size:19
Alignment explanation
Indices: 108382045--108382083 Score: 55
Period size: 18 Copynumber: 2.1 Consensus size: 19
108382035 AAAAGTCTTC
108382045 GAAAGAAAGGAAAATAAAG
1 GAAAGAAAGGAAAATAAAG
108382064 GAAA-AAAGGTAAAA-AAAG
1 GAAAGAAAGG-AAAATAAAG
108382082 GA
1 GA
108382084 CCCTGCACGT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
18 11 0.58
19 8 0.42
ACGTcount: A:0.69, C:0.00, G:0.26, T:0.05
Consensus pattern (19 bp):
GAAAGAAAGGAAAATAAAG
Found at i:108385210 original size:27 final size:27
Alignment explanation
Indices: 108385172--108385230 Score: 118
Period size: 27 Copynumber: 2.2 Consensus size: 27
108385162 AGAGGCTATA
108385172 AAAGCTATATGTTTCTCTTCCCTTAAG
1 AAAGCTATATGTTTCTCTTCCCTTAAG
108385199 AAAGCTATATGTTTCTCTTCCCTTAAG
1 AAAGCTATATGTTTCTCTTCCCTTAAG
108385226 AAAGC
1 AAAGC
108385231 CATGGTAGAG
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 32 1.00
ACGTcount: A:0.29, C:0.22, G:0.12, T:0.37
Consensus pattern (27 bp):
AAAGCTATATGTTTCTCTTCCCTTAAG
Found at i:108385601 original size:16 final size:15
Alignment explanation
Indices: 108385549--108385603 Score: 56
Period size: 16 Copynumber: 3.5 Consensus size: 15
108385539 GAAAGATCAT
* *
108385549 ATTTTCCATCTTTCT
1 ATTTTTCATCTTTCA
*
108385564 ATATTTCTATCATTTCA
1 ATTTTTC-ATC-TTTCA
108385581 ATTTTTCATCTTTCAA
1 ATTTTTCATCTTTC-A
108385597 ATTTTTC
1 ATTTTTC
108385604 TTTTCACTCT
Statistics
Matches: 33, Mismatches: 4, Indels: 5
0.79 0.10 0.12
Matches are distributed among these distances:
15 9 0.27
16 14 0.42
17 10 0.30
ACGTcount: A:0.22, C:0.20, G:0.00, T:0.58
Consensus pattern (15 bp):
ATTTTTCATCTTTCA
Found at i:108386626 original size:17 final size:17
Alignment explanation
Indices: 108386604--108386639 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
108386594 TTAATTATTT
*
108386604 TTTAAAATTTAAAAAAA
1 TTTAAAAATTAAAAAAA
*
108386621 TTTAAAAATTATAAAAA
1 TTTAAAAATTAAAAAAA
108386638 TT
1 TT
108386640 ATTTTTAAAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (17 bp):
TTTAAAAATTAAAAAAA
Found at i:108386664 original size:38 final size:40
Alignment explanation
Indices: 108386596--108386675 Score: 105
Period size: 38 Copynumber: 2.0 Consensus size: 40
108386586 CGTTAGTATT
108386596 AATTATTTTTTAAAATTTAAAAAAATTTAAAAATTA-TAAA
1 AATTATTTTTTAAAATTTAAAAAAATTT-AAAATTATTAAA
*
108386636 AATTA-TTTTTAAAA-TTAAAAATCA-TTAAAATTATTAAA
1 AATTATTTTTTAAAATTTAAAAA-AATTTAAAATTATTAAA
108386674 AA
1 AA
108386676 ATACAAAAAC
Statistics
Matches: 37, Mismatches: 1, Indels: 6
0.84 0.02 0.14
Matches are distributed among these distances:
37 7 0.19
38 15 0.41
39 10 0.27
40 5 0.14
ACGTcount: A:0.57, C:0.01, G:0.00, T:0.41
Consensus pattern (40 bp):
AATTATTTTTTAAAATTTAAAAAAATTTAAAATTATTAAA
Found at i:108399252 original size:9 final size:9
Alignment explanation
Indices: 108399208--108399420 Score: 65
Period size: 9 Copynumber: 23.4 Consensus size: 9
108399198 ATAAATAGTA
*
108399208 AAAAATATT
1 AAAATTATT
108399217 AAAA-TATT
1 AAAATTATT
*
108399225 AAAATTGACAT
1 AAAATT-A-TT
*
108399236 AAATTTATT
1 AAAATTATT
108399245 AAAATTA-T
1 AAAATTATT
108399253 AAAAGCTTA-T
1 AAAA--TTATT
*
108399263 AAATATTATA
1 AAA-ATTATT
**
108399273 AAAATATAAA
1 AAAAT-TATT
*
108399283 AAAATCTACT
1 AAAAT-TATT
*
108399293 -AAATTATAA
1 AAAATTAT-T
108399302 AAAATTATT
1 AAAATTATT
*
108399311 -AAATTAAT
1 AAAATTATT
108399319 AAAATCTATTT
1 AAAAT-TA-TT
*
108399330 AAAATAATT
1 AAAATTATT
108399339 AAAA-TA--
1 AAAATTATT
108399345 AAAATGTATT
1 AAAAT-TATT
* *
108399355 AGAATTCTT
1 AAAATTATT
*
108399364 AAAA--AAT
1 AAAATTATT
*
108399371 AAATAATATT
1 AAA-ATTATT
108399381 AAAA-TATT
1 AAAATTATT
108399389 AAAATTGATAT
1 AAAATT-AT-T
*
108399400 AAACTTA-T
1 AAAATTATT
108399408 AAAACTTA-T
1 AAAA-TTATT
108399417 AAAA
1 AAAA
108399421 AAATTATACA
Statistics
Matches: 156, Mismatches: 24, Indels: 48
0.68 0.11 0.21
Matches are distributed among these distances:
6 4 0.03
7 4 0.03
8 38 0.24
9 47 0.30
10 44 0.28
11 19 0.12
ACGTcount: A:0.59, C:0.04, G:0.02, T:0.35
Consensus pattern (9 bp):
AAAATTATT
Found at i:108399331 original size:19 final size:18
Alignment explanation
Indices: 108399283--108399343 Score: 61
Period size: 19 Copynumber: 3.3 Consensus size: 18
108399273 AAAATATAAA
* *
108399283 AAAATCTACTAAATTATAA
1 AAAATCTATTAAATTA-AT
108399302 AAAAT-TATTAAATTAAT
1 AAAATCTATTAAATTAAT
*
108399319 AAAATCTATTTAAAATAATT
1 AAAATCTA-TTAAATTAA-T
108399339 AAAAT
1 AAAAT
108399344 AAAAATGTAT
Statistics
Matches: 36, Mismatches: 3, Indels: 5
0.82 0.07 0.11
Matches are distributed among these distances:
17 6 0.17
18 11 0.31
19 13 0.36
20 6 0.17
ACGTcount: A:0.59, C:0.05, G:0.00, T:0.36
Consensus pattern (18 bp):
AAAATCTATTAAATTAAT
Found at i:108399390 original size:25 final size:24
Alignment explanation
Indices: 108399319--108399393 Score: 62
Period size: 25 Copynumber: 3.0 Consensus size: 24
108399309 TTAAATTAAT
*
108399319 AAAATCTATTTAAAATAATTAAAATA
1 AAAATATA-TTAAAAT-ATTAAAATA
* * *
108399345 AAAATGTATTAGAATTCTTAAAA-A
1 AAAATATATTA-AAATATTAAAATA
108399369 ATAAATAATATTAAAATATTAAAAT
1 A-AAAT-ATATTAAAATATTAAAAT
108399394 TGATATAAAC
Statistics
Matches: 39, Mismatches: 6, Indels: 8
0.74 0.11 0.15
Matches are distributed among these distances:
24 2 0.05
25 22 0.56
26 15 0.38
ACGTcount: A:0.60, C:0.03, G:0.03, T:0.35
Consensus pattern (24 bp):
AAAATATATTAAAATATTAAAATA
Found at i:108405606 original size:17 final size:16
Alignment explanation
Indices: 108405552--108405610 Score: 70
Period size: 16 Copynumber: 3.8 Consensus size: 16
108405542 TTCAAAAAAT
108405552 AAAAAAATT-A-TTTA
1 AAAAAAATTAATTTTA
**
108405566 AAAAGTA-TAATTTTA
1 AAAAAAATTAATTTTA
108405581 AAAAAAATTAATTTTA
1 AAAAAAATTAATTTTA
108405597 AAAAATAATTAATT
1 AAAAA-AATTAATT
108405611 GCTAACATAG
Statistics
Matches: 37, Mismatches: 4, Indels: 5
0.80 0.09 0.11
Matches are distributed among these distances:
13 1 0.03
14 6 0.16
15 9 0.24
16 13 0.35
17 8 0.22
ACGTcount: A:0.61, C:0.00, G:0.02, T:0.37
Consensus pattern (16 bp):
AAAAAAATTAATTTTA
Found at i:108406764 original size:28 final size:30
Alignment explanation
Indices: 108406705--108406767 Score: 76
Period size: 28 Copynumber: 2.2 Consensus size: 30
108406695 TAATTTATAT
* * *
108406705 TTTTATAGTTTTTAGAGGATTAAATTAAAA
1 TTTTATAGATTTTAGAGAATTAAAGTAAAA
*
108406735 TTTTATA-ATTTTAG-GAATTAAAGTACAA
1 TTTTATAGATTTTAGAGAATTAAAGTAAAA
108406763 TTTTA
1 TTTTA
108406768 CTATTACTAA
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
28 16 0.55
29 6 0.21
30 7 0.24
ACGTcount: A:0.40, C:0.02, G:0.11, T:0.48
Consensus pattern (30 bp):
TTTTATAGATTTTAGAGAATTAAAGTAAAA
Found at i:108408357 original size:19 final size:17
Alignment explanation
Indices: 108408324--108408358 Score: 52
Period size: 19 Copynumber: 1.9 Consensus size: 17
108408314 ATGCCAACAA
108408324 TATTTATTTAATATAAT
1 TATTTATTTAATATAAT
108408341 TATTGTATTTAAATATAA
1 TATT-TATTT-AATATAA
108408359 ATTAAAACAA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 4 0.25
18 5 0.31
19 7 0.44
ACGTcount: A:0.43, C:0.00, G:0.03, T:0.54
Consensus pattern (17 bp):
TATTTATTTAATATAAT
Found at i:108416535 original size:51 final size:51
Alignment explanation
Indices: 108416480--108416605 Score: 162
Period size: 51 Copynumber: 2.5 Consensus size: 51
108416470 CAATCAAATC
* * * * *
108416480 TCTAAGAATATAAAATCATATCTTCTAAGATTACCTATCTTATTTAAGATA
1 TCTAAGATTATAAAATCATATCTTATAAGATTACATATCATATCTAAGATA
** * *
108416531 TCTAATCTTATAAAATAATATCTTATAAGATTACATATCATATCTAAGATC
1 TCTAAGATTATAAAATCATATCTTATAAGATTACATATCATATCTAAGATA
*
108416582 TCCAAGATTATAAAATCATATCTT
1 TCTAAGATTATAAAATCATATCTT
108416606 TCAAGATCAT
Statistics
Matches: 62, Mismatches: 13, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
51 62 1.00
ACGTcount: A:0.42, C:0.14, G:0.05, T:0.39
Consensus pattern (51 bp):
TCTAAGATTATAAAATCATATCTTATAAGATTACATATCATATCTAAGATA
Found at i:108421813 original size:51 final size:51
Alignment explanation
Indices: 108421678--108421813 Score: 159
Period size: 51 Copynumber: 2.7 Consensus size: 51
108421668 CTACAATCAA
* * *
108421678 ATCTCTAAGAATATAAAATCATATC-TTCTAAGATTACCTATCTTATCTAAG
1 ATCTCTAAGATTATAAAATCATATCTTTC-AAGATTACATATCATATCTAAG
* * ** *
108421729 ATATGTAATCTTATAAAATAATATCTTAT-AAGATTACATATCATATCTAAG
1 ATCTCTAAGATTATAAAATCATATCTT-TCAAGATTACATATCATATCTAAG
*
108421780 ATCTCCAAGATTATAAAATCATATCTTTCAAGAT
1 ATCTCTAAGATTATAAAATCATATCTTTCAAGAT
108421814 CATGTTTCCA
Statistics
Matches: 68, Mismatches: 14, Indels: 6
0.77 0.16 0.07
Matches are distributed among these distances:
50 1 0.01
51 65 0.96
52 1 0.01
53 1 0.01
ACGTcount: A:0.42, C:0.15, G:0.06, T:0.38
Consensus pattern (51 bp):
ATCTCTAAGATTATAAAATCATATCTTTCAAGATTACATATCATATCTAAG
Found at i:108422429 original size:39 final size:36
Alignment explanation
Indices: 108422349--108422430 Score: 96
Period size: 38 Copynumber: 2.2 Consensus size: 36
108422339 CTAAAAGTTG
*
108422349 TTTTTTTTCTTGTTTTTATATTTTAAGTATGCTTTTA
1 TTTTTTTTCTTGTTTATATATTTTAAGTAT-CTTTTA
108422386 TTTTTCTTTCTTAGTTTATATATTTTTAA-TAT-TTCTTA
1 TTTTT-TTTCTT-GTTTATATA-TTTTAAGTATCTT-TTA
108422424 TTTTTTT
1 TTTTTTT
108422431 AGTTTTAATG
Statistics
Matches: 40, Mismatches: 1, Indels: 8
0.82 0.02 0.16
Matches are distributed among these distances:
37 9 0.22
38 14 0.35
39 11 0.28
40 6 0.15
ACGTcount: A:0.17, C:0.06, G:0.05, T:0.72
Consensus pattern (36 bp):
TTTTTTTTCTTGTTTATATATTTTAAGTATCTTTTA
Found at i:108433220 original size:21 final size:21
Alignment explanation
Indices: 108433196--108433242 Score: 53
Period size: 20 Copynumber: 2.3 Consensus size: 21
108433186 TGTGCACAAT
*
108433196 TGTTCA-CTTCTCCTACGCCCG
1 TGTTCAGCTTCACC-ACGCCCG
*
108433217 TGTT-AGGTTCACCACGCCCG
1 TGTTCAGCTTCACCACGCCCG
108433237 TGTTCA
1 TGTTCA
108433243 TGGCTTATGC
Statistics
Matches: 22, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
20 12 0.55
21 10 0.45
ACGTcount: A:0.13, C:0.36, G:0.19, T:0.32
Consensus pattern (21 bp):
TGTTCAGCTTCACCACGCCCG
Found at i:108439417 original size:30 final size:30
Alignment explanation
Indices: 108439360--108439417 Score: 91
Period size: 30 Copynumber: 1.9 Consensus size: 30
108439350 CATGGCCATG
*
108439360 ACACACGGGCGTGTGGTCTACCTGTGTGTC
1 ACACACGGGCGTGTGGTCTACCCGTGTGTC
108439390 ACACACGGGCGTGTGGATC-ACCCGTGTG
1 ACACACGGGCGTGTGG-TCTACCCGTGTG
108439418 GAAGTTCCTA
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
30 24 0.92
31 2 0.08
ACGTcount: A:0.16, C:0.28, G:0.34, T:0.22
Consensus pattern (30 bp):
ACACACGGGCGTGTGGTCTACCCGTGTGTC
Found at i:108449255 original size:11 final size:11
Alignment explanation
Indices: 108449229--108449390 Score: 67
Period size: 11 Copynumber: 14.1 Consensus size: 11
108449219 CCCCTATGTA
*
108449229 TGTGAACCCCCC
1 TGTGAA-CCCCT
108449241 TGTGAACCCCT
1 TGTGAACCCCT
108449252 TGTGAACCCCT
1 TGTGAACCCCT
* *
108449263 TGCGAACTCCCA
1 TGTGAAC-CCCT
*
108449275 TGCGAACCCCT
1 TGTGAACCCCT
** *
108449286 TACGATCCCCT
1 TGTGAACCCCT
* *
108449297 ATGCGAACCCTT
1 -TGTGAACCCCT
*
108449309 TGCGAA-CCCT
1 TGTGAACCCCT
* *
108449319 TATACGAACCCCCA
1 TGT--GAA-CCCCT
*
108449333 TGTGAA-CCCA
1 TGTGAACCCCT
* *
108449343 TGTGAACATCCA
1 TGTGAAC-CCCT
*
108449355 TGCGAACCCCT
1 TGTGAACCCCT
*
108449366 GGTGAACCCCT
1 TGTGAACCCCT
*
108449377 CCGTGAACCACCT
1 -TGTGAACC-CCT
108449390 T
1 T
108449391 TACATGTGAA
Statistics
Matches: 118, Mismatches: 22, Indels: 20
0.74 0.14 0.12
Matches are distributed among these distances:
10 14 0.12
11 50 0.42
12 46 0.39
13 3 0.03
14 5 0.04
ACGTcount: A:0.23, C:0.40, G:0.17, T:0.21
Consensus pattern (11 bp):
TGTGAACCCCT
Found at i:108449281 original size:23 final size:23
Alignment explanation
Indices: 108449244--108449330 Score: 97
Period size: 23 Copynumber: 3.8 Consensus size: 23
108449234 ACCCCCCTGT
*
108449244 GAACCCCT-TGTGAACCCCTTGC
1 GAACCCCTATGCGAACCCCTTGC
*
108449266 GAACTCCC-ATGCGAACCCCTTAC
1 GAAC-CCCTATGCGAACCCCTTGC
* *
108449289 GATCCCCTATGCGAACCCTTTGC
1 GAACCCCTATGCGAACCCCTTGC
* *
108449312 GAACCCTTATACGAACCCC
1 GAACCCCTATGCGAACCCC
108449331 CATGTGAACC
Statistics
Matches: 53, Mismatches: 9, Indels: 5
0.79 0.13 0.07
Matches are distributed among these distances:
22 7 0.13
23 46 0.87
ACGTcount: A:0.23, C:0.41, G:0.15, T:0.21
Consensus pattern (23 bp):
GAACCCCTATGCGAACCCCTTGC
Found at i:108449296 original size:34 final size:34
Alignment explanation
Indices: 108449244--108449349 Score: 99
Period size: 34 Copynumber: 3.1 Consensus size: 34
108449234 ACCCCCCTGT
**
108449244 GAACCCCTTGTGAACCCCT-TGCGAACTCCCATGC
1 GAACCCCTTACGAACCCCTATGCGAAC-CCCATGC
* **
108449278 GAACCCCTTACGATCCCCTATGCGAACCCTTTGC
1 GAACCCCTTACGAACCCCTATGCGAACCCCATGC
* * * *
108449312 GAACCCTTATACGAACCCCCATGTGAA-CCCATGT
1 GAACCCCT-TACGAACCCCTATGCGAACCCCATGC
108449346 GAAC
1 GAAC
108449350 ATCCATGCGA
Statistics
Matches: 58, Mismatches: 12, Indels: 4
0.78 0.16 0.05
Matches are distributed among these distances:
34 36 0.62
35 22 0.38
ACGTcount: A:0.25, C:0.39, G:0.16, T:0.21
Consensus pattern (34 bp):
GAACCCCTTACGAACCCCTATGCGAACCCCATGC
Found at i:108452940 original size:16 final size:16
Alignment explanation
Indices: 108452916--108452946 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
108452906 TGTTAAGATT
*
108452916 TATGTAAATTTTTTAA
1 TATGCAAATTTTTTAA
108452932 TATGCAAATTTTTTA
1 TATGCAAATTTTTTA
108452947 TCGAATATAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.35, C:0.03, G:0.06, T:0.55
Consensus pattern (16 bp):
TATGCAAATTTTTTAA
Found at i:108454675 original size:21 final size:20
Alignment explanation
Indices: 108454651--108454704 Score: 63
Period size: 21 Copynumber: 2.6 Consensus size: 20
108454641 AATAAAGTTT
* *
108454651 AAATTTATTAAATTTAAAATA
1 AAATTTAATAAAATT-AAATA
*
108454672 AAATTAAATAAAATTAAATA
1 AAATTTAATAAAATTAAATA
108454692 AAATTTAAATAAA
1 AAATTT-AATAAA
108454705 TTATTTAATT
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
20 10 0.36
21 18 0.64
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (20 bp):
AAATTTAATAAAATTAAATA
Found at i:108454682 original size:10 final size:10
Alignment explanation
Indices: 108454667--108454704 Score: 67
Period size: 10 Copynumber: 3.7 Consensus size: 10
108454657 ATTAAATTTA
108454667 AAATAAAATT
1 AAATAAAATT
108454677 AAATAAAATT
1 AAATAAAATT
108454687 AAATAAAATTT
1 AAATAAAA-TT
108454698 AAATAAA
1 AAATAAA
108454705 TTATTTAATT
Statistics
Matches: 27, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
10 18 0.67
11 9 0.33
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (10 bp):
AAATAAAATT
Found at i:108454705 original size:10 final size:10
Alignment explanation
Indices: 108454650--108454706 Score: 62
Period size: 10 Copynumber: 5.6 Consensus size: 10
108454640 CAATAAAGTT
*
108454650 TAAATTT-AT
1 TAAATTTAAA
108454659 TAAATTTAAAA
1 TAAATTT-AAA
*
108454670 TAAAATTAAA
1 TAAATTTAAA
*
108454680 TAAAATTAAA
1 TAAATTTAAA
108454690 TAAAATTTAAA
1 T-AAATTTAAA
108454701 TAAATT
1 TAAATT
108454707 ATTTAATTGA
Statistics
Matches: 42, Mismatches: 3, Indels: 5
0.84 0.06 0.10
Matches are distributed among these distances:
9 7 0.17
10 19 0.45
11 16 0.38
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (10 bp):
TAAATTTAAA
Found at i:108459736 original size:28 final size:31
Alignment explanation
Indices: 108459686--108459745 Score: 81
Period size: 28 Copynumber: 2.0 Consensus size: 31
108459676 CAAATTTAAA
*
108459686 TATTTAAATTAAATCTTATTTTTTCTAATAT
1 TATTTAAATTAAATCTTAGTTTTTCTAATAT
*
108459717 TATTTAAA-T-AAT-TTAGTTTTTTTAATAT
1 TATTTAAATTAAATCTTAGTTTTTCTAATAT
108459745 T
1 T
108459746 CAAAATTAAA
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
28 15 0.56
29 3 0.11
30 1 0.04
31 8 0.30
ACGTcount: A:0.35, C:0.03, G:0.02, T:0.60
Consensus pattern (31 bp):
TATTTAAATTAAATCTTAGTTTTTCTAATAT
Found at i:108459772 original size:16 final size:16
Alignment explanation
Indices: 108459751--108459782 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
108459741 ATATTCAAAA
*
108459751 TTAAAATTTAAAAATT
1 TTAAAATTGAAAAATT
108459767 TTAAAATTGAAAAATT
1 TTAAAATTGAAAAATT
108459783 AAATAAAATC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.56, C:0.00, G:0.03, T:0.41
Consensus pattern (16 bp):
TTAAAATTGAAAAATT
Found at i:108460768 original size:14 final size:14
Alignment explanation
Indices: 108460749--108460786 Score: 58
Period size: 14 Copynumber: 2.7 Consensus size: 14
108460739 GTTTGCCAGT
*
108460749 AAAATGTTTTCCGG
1 AAAATGATTTCCGG
*
108460763 AAAATGATTTCTGG
1 AAAATGATTTCCGG
108460777 AAAATGATTT
1 AAAATGATTT
108460787 ATTGAAAATA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
14 22 1.00
ACGTcount: A:0.37, C:0.08, G:0.18, T:0.37
Consensus pattern (14 bp):
AAAATGATTTCCGG
Found at i:108460793 original size:14 final size:14
Alignment explanation
Indices: 108460761--108460799 Score: 53
Period size: 14 Copynumber: 2.9 Consensus size: 14
108460751 AATGTTTTCC
*
108460761 GGAAAATGATTTCT
1 GGAAAATGATTTAT
108460775 GGAAAATGATTTAT
1 GGAAAATGATTTAT
*
108460789 TGAAAAT-ATTT
1 GGAAAATGATTT
108460800 TCTGGTGTTT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
13 4 0.17
14 19 0.83
ACGTcount: A:0.41, C:0.03, G:0.18, T:0.38
Consensus pattern (14 bp):
GGAAAATGATTTAT
Found at i:108460865 original size:32 final size:32
Alignment explanation
Indices: 108460789--108460866 Score: 86
Period size: 33 Copynumber: 2.4 Consensus size: 32
108460779 AATGATTTAT
*
108460789 TGAAAATATTTTCTGGTGTTTGGATGAAGCTG
1 TGAAAATATTTTCTGGTGTTTGGATGAAGCTC
* ***
108460821 TGTAAAATATTTTCTGTTGTTTGGCA-GATTTTC
1 TG-AAAATATTTTCTGGTGTTTGG-ATGAAGCTC
108460854 TGAAAATATTTTC
1 TGAAAATATTTTC
108460867 CGTAAAAGTT
Statistics
Matches: 39, Mismatches: 5, Indels: 4
0.81 0.10 0.08
Matches are distributed among these distances:
32 13 0.33
33 25 0.64
34 1 0.03
ACGTcount: A:0.26, C:0.08, G:0.21, T:0.46
Consensus pattern (32 bp):
TGAAAATATTTTCTGGTGTTTGGATGAAGCTC
Found at i:108464805 original size:16 final size:16
Alignment explanation
Indices: 108464744--108464872 Score: 91
Period size: 16 Copynumber: 7.9 Consensus size: 16
108464734 TGCATATTTT
108464744 CACAGCTCACACATTA
1 CACAGCTCACACATTA
*
108464760 CTACAGGTCACACATTA
1 C-ACAGCTCACACATTA
* **
108464777 CATAGCTTGCACATTA
1 CACAGCTCACACATTA
* *
108464793 CACAACTCACACATCA
1 CACAGCTCACACATTA
***
108464809 TTGTAGCTCACACATTA
1 -CACAGCTCACACATTA
*
108464826 CACAGCACACACA-T-
1 CACAGCTCACACATTA
* *
108464840 CACTATGACTCGCAAATTA
1 CAC-A-G-CTCACACATTA
108464859 CACAGCTCACACAT
1 CACAGCTCACACAT
108464873 CAATACGACT
Statistics
Matches: 82, Mismatches: 24, Indels: 14
0.68 0.20 0.12
Matches are distributed among these distances:
14 3 0.04
15 2 0.02
16 40 0.49
17 32 0.39
18 2 0.02
19 3 0.04
ACGTcount: A:0.36, C:0.33, G:0.09, T:0.22
Consensus pattern (16 bp):
CACAGCTCACACATTA
Found at i:108464816 original size:33 final size:35
Alignment explanation
Indices: 108464747--108464874 Score: 126
Period size: 33 Copynumber: 3.8 Consensus size: 35
108464737 ATATTTTCAC
* * *
108464747 AGCTCACACATTACTACAGGTCACACATTAC-A--T
1 AGCTCGCACATTAC-ACAGCTCACACATCACTATGT
* *
108464780 AGCTTGCACATTACACAACTCACACATCA-T-TGT
1 AGCTCGCACATTACACAGCTCACACATCACTATGT
* *
108464813 AGCTCACACATTACACAGCACACACATCACTATG-
1 AGCTCGCACATTACACAGCTCACACATCACTATGT
*
108464847 A-CTCGCAAATTACACAGCTCACACATCA
1 AGCTCGCACATTACACAGCTCACACATCA
108464875 ATACGACTCG
Statistics
Matches: 78, Mismatches: 12, Indels: 10
0.78 0.12 0.10
Matches are distributed among these distances:
32 12 0.15
33 62 0.79
34 2 0.03
35 2 0.03
ACGTcount: A:0.37, C:0.33, G:0.09, T:0.22
Consensus pattern (35 bp):
AGCTCGCACATTACACAGCTCACACATCACTATGT
Found at i:108464859 original size:66 final size:66
Alignment explanation
Indices: 108464747--108464874 Score: 170
Period size: 66 Copynumber: 1.9 Consensus size: 66
108464737 ATATTTTCAC
** * * *
108464747 AGCTCACACATTACTACAGGTCACACATTACATAGCTTGCACATTACACAACTCACACATCATTG
1 AGCTCACACATTACTACAGCACACACATCACATAGCTCGCAAATTACACAACTCACACATCATTG
108464812 T
66 T
*
108464813 AGCTCACACATTAC-ACAGCACACACATCAC-TATGACTCGCAAATTACACAGCTCACACATCA
1 AGCTCACACATTACTACAGCACACACATCACATA-G-CTCGCAAATTACACAACTCACACATCA
108464875 ATACGACTCG
Statistics
Matches: 54, Mismatches: 6, Indels: 4
0.84 0.09 0.06
Matches are distributed among these distances:
64 2 0.04
65 14 0.26
66 38 0.70
ACGTcount: A:0.37, C:0.33, G:0.09, T:0.22
Consensus pattern (66 bp):
AGCTCACACATTACTACAGCACACACATCACATAGCTCGCAAATTACACAACTCACACATCATTG
T
Found at i:108464883 original size:33 final size:33
Alignment explanation
Indices: 108464822--108464884 Score: 99
Period size: 33 Copynumber: 1.9 Consensus size: 33
108464812 TAGCTCACAC
* *
108464822 ATTACACAGCACACACATCACTATGACTCGCAA
1 ATTACACAGCACACACATCAATACGACTCGCAA
*
108464855 ATTACACAGCTCACACATCAATACGACTCG
1 ATTACACAGCACACACATCAATACGACTCG
108464885 TACATTGATA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
33 27 1.00
ACGTcount: A:0.38, C:0.33, G:0.10, T:0.19
Consensus pattern (33 bp):
ATTACACAGCACACACATCAATACGACTCGCAA
Found at i:108468087 original size:46 final size:46
Alignment explanation
Indices: 108468020--108468187 Score: 164
Period size: 46 Copynumber: 3.6 Consensus size: 46
108468010 TAAACCGCCC
*
108468020 ATAAGTGAACTCGGGCTCAACTCAATGAGCTCGGTTGTTCGCATCT
1 ATAAGTGAACTCGGACTCAACTCAATGAGCTCGGTTGTTCGCATCT
* *
108468066 ATAAGTGAACTTGGACTCAACTCAATGAGCTCGGATGCCTAGTT-ACATCT
1 ATAAGTGAACTCGGACTCAACTCAATGAGCTCGG-T---T-GTTCGCATCT
* * ** *
108468116 -CAA--GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCC
1 ATAAGTGAACTCGGACTCAACTCAATGAGCTCGGTTGTTCGCATCT
* * *
108468159 ATAAGTGAACTCGAAATCAACTTAATGAG
1 ATAAGTGAACTCGGACTCAACTCAATGAG
108468188 TTCGAAACTC
Statistics
Matches: 98, Mismatches: 15, Indels: 18
0.75 0.11 0.14
Matches are distributed among these distances:
42 3 0.03
43 4 0.04
44 2 0.02
46 51 0.52
47 27 0.28
49 2 0.02
50 6 0.06
51 3 0.03
ACGTcount: A:0.30, C:0.24, G:0.21, T:0.24
Consensus pattern (46 bp):
ATAAGTGAACTCGGACTCAACTCAATGAGCTCGGTTGTTCGCATCT
Found at i:108474431 original size:46 final size:45
Alignment explanation
Indices: 108474263--108474438 Score: 189
Period size: 46 Copynumber: 3.8 Consensus size: 45
108474253 TGTAACCCGC
* * * *
108474263 CCATAAGTGAACTCAGAATTAACTCAACGAGCTCGGGCGTTCCCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACGTT-CCAT
*
108474309 CCATAAGTGAACTCGGACTCAACTCAACGAGCTC-GA-ATTCCTAGTT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACGTTCC-A--T
*
108474355 ACATCTCAA--GAACTCGGACTCAACTCAACGAGCTCGGACGTTCGCAT
1 CCA--T-AAGTGAACTCGGACTCAACTCAACGAGCTCGGACGTTC-CAT
*
108474402 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA
108474439 ACTCAAATAT
Statistics
Matches: 110, Mismatches: 9, Indels: 22
0.78 0.06 0.16
Matches are distributed among these distances:
43 2 0.02
44 5 0.05
45 2 0.02
46 62 0.56
47 29 0.26
48 3 0.03
49 6 0.05
50 1 0.01
ACGTcount: A:0.31, C:0.29, G:0.19, T:0.21
Consensus pattern (45 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACGTTCCAT
Found at i:108478012 original size:24 final size:27
Alignment explanation
Indices: 108477985--108478035 Score: 72
Period size: 24 Copynumber: 2.0 Consensus size: 27
108477975 AAAAGTATAA
108477985 TTAGATTAAT-ATTAAAA-A-ATTTAG
1 TTAGATTAATAATTAAAATATATTTAG
*
108478009 TTAGATTTATAATTAAAATATATTTAG
1 TTAGATTAATAATTAAAATATATTTAG
108478036 GTCTAGAGTA
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
24 9 0.39
25 7 0.30
26 1 0.04
27 6 0.26
ACGTcount: A:0.47, C:0.00, G:0.08, T:0.45
Consensus pattern (27 bp):
TTAGATTAATAATTAAAATATATTTAG
Found at i:108482524 original size:17 final size:17
Alignment explanation
Indices: 108482502--108482534 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
108482492 CTAATATAGG
108482502 GCTTAACAAAACTATCA
1 GCTTAACAAAACTATCA
108482519 GCTTAACAAAACTATC
1 GCTTAACAAAACTATC
108482535 TGACCCCATA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.45, C:0.24, G:0.06, T:0.24
Consensus pattern (17 bp):
GCTTAACAAAACTATCA
Found at i:108492928 original size:22 final size:22
Alignment explanation
Indices: 108492903--108492944 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
108492893 CGGATGGCTC
*
108492903 GTGGCATCGATATTGTCAAAGA
1 GTGGCATCGATACTGTCAAAGA
*
108492925 GTGGCATCGATGCTGTCAAA
1 GTGGCATCGATACTGTCAAA
108492945 CCGCTCAAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.29, C:0.17, G:0.29, T:0.26
Consensus pattern (22 bp):
GTGGCATCGATACTGTCAAAGA
Found at i:108495712 original size:50 final size:50
Alignment explanation
Indices: 108495588--108495836 Score: 284
Period size: 50 Copynumber: 4.8 Consensus size: 50
108495578 GATAATAACA
* * ** * *
108495588 TGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGATGTTCTCGTGAT-GG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGA-CCTCTCAT-CTCGG
* *
108495639 TGCCCATGCCATGTCCCAGACATGGTCTTATAGGGGACCTCTCATCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATCTCGG
* * *
108495689 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGTCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATCTCGG
* *
108495739 TGCCCATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATGATCTTAAGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTC---ATC-T-CGG
* *
108495794 ATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCTCT
1 -TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCT
108495837 TTACCCAAAT
Statistics
Matches: 170, Mismatches: 21, Indels: 9
0.85 0.10 0.05
Matches are distributed among these distances:
49 1 0.01
50 92 0.54
51 33 0.19
53 2 0.01
54 1 0.01
55 2 0.01
56 39 0.23
ACGTcount: A:0.20, C:0.29, G:0.24, T:0.26
Consensus pattern (50 bp):
TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATCTCGG
Found at i:108495766 original size:100 final size:104
Alignment explanation
Indices: 108495587--108495836 Score: 357
Period size: 100 Copynumber: 2.4 Consensus size: 104
108495577 TGATAATAAC
**
108495587 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGATGTTCTCGTGATGGTGCCCATGCCATG
1 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGA-CCTCTCGTGATGGTGCCCATGCCATG
* *
108495652 TCCCAGACATGGTCTTATAGGGGACCTCTC-ATC-T-CGG
65 TCCCAGACATGGTCTTACAGGGGACCTCTCAATCTTAAGG
* *
108495689 -TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGT-CTCGGTGCCCATGCCATG
1 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGTGAT-GGTGCCCATGCCATG
108495752 TCCCAGACATGGTCTTACAGGGGACCTCTCATGATCTTAAGG
65 TCCCAGACATGGTCTTACAGGGGACCTCTCA--ATCTTAAGG
* *
108495794 ATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCTCT
1 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGACCTCT
108495837 TTACCCAAAT
Statistics
Matches: 133, Mismatches: 8, Indels: 10
0.88 0.05 0.07
Matches are distributed among these distances:
99 1 0.01
100 50 0.38
101 36 0.27
103 3 0.02
104 1 0.01
105 2 0.02
106 40 0.30
ACGTcount: A:0.21, C:0.29, G:0.24, T:0.26
Consensus pattern (104 bp):
ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGTGATGGTGCCCATGCCATGT
CCCAGACATGGTCTTACAGGGGACCTCTCAATCTTAAGG
Found at i:108495952 original size:13 final size:13
Alignment explanation
Indices: 108495931--108495962 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
108495921 GCTTGGATCA
*
108495931 TCATCAAATAAAT
1 TCATAAAATAAAT
108495944 TCATAAAATAAAT
1 TCATAAAATAAAT
108495957 TCATAA
1 TCATAA
108495963 TTGCTGGAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.56, C:0.12, G:0.00, T:0.31
Consensus pattern (13 bp):
TCATAAAATAAAT
Found at i:108496209 original size:30 final size:30
Alignment explanation
Indices: 108496174--108496231 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 30
108496164 CCTCGACTCT
*
108496174 AACTTTTTCAAAATTACAATTTTGCCCCTA
1 AACTTTTACAAAATTACAATTTTGCCCCTA
* *
108496204 AACTTTTACATAATTACATTTTTGCCCC
1 AACTTTTACAAAATTACAATTTTGCCCC
108496232 AAGGCTCGGA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.31, C:0.24, G:0.03, T:0.41
Consensus pattern (30 bp):
AACTTTTACAAAATTACAATTTTGCCCCTA
Found at i:108503302 original size:50 final size:50
Alignment explanation
Indices: 108503178--108503426 Score: 284
Period size: 50 Copynumber: 4.8 Consensus size: 50
108503168 GATAATAACA
* * ** * *
108503178 TGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGATGTTCTCGTGAT-GG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGA-CCTCTCAT-CTCGG
* *
108503229 TGCCCATGCCATGTCCCAGACATGGTCTTATAGGGGACCTCTCATCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATCTCGG
* * *
108503279 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGTCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATCTCGG
* *
108503329 TGCCCATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATGATCTTAAGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTC---ATC-T-CGG
* *
108503384 ATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCTCT
1 -TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCT
108503427 TTACCCAAAT
Statistics
Matches: 170, Mismatches: 21, Indels: 9
0.85 0.10 0.05
Matches are distributed among these distances:
49 1 0.01
50 92 0.54
51 33 0.19
53 2 0.01
54 1 0.01
55 2 0.01
56 39 0.23
ACGTcount: A:0.20, C:0.29, G:0.24, T:0.26
Consensus pattern (50 bp):
TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATCTCGG
Found at i:108503356 original size:100 final size:104
Alignment explanation
Indices: 108503177--108503426 Score: 357
Period size: 100 Copynumber: 2.4 Consensus size: 104
108503167 TGATAATAAC
**
108503177 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGATGTTCTCGTGATGGTGCCCATGCCATG
1 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGA-CCTCTCGTGATGGTGCCCATGCCATG
* *
108503242 TCCCAGACATGGTCTTATAGGGGACCTCTC-ATC-T-CGG
65 TCCCAGACATGGTCTTACAGGGGACCTCTCAATCTTAAGG
* *
108503279 -TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGT-CTCGGTGCCCATGCCATG
1 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGTGAT-GGTGCCCATGCCATG
108503342 TCCCAGACATGGTCTTACAGGGGACCTCTCATGATCTTAAGG
65 TCCCAGACATGGTCTTACAGGGGACCTCTCA--ATCTTAAGG
* *
108503384 ATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCTCT
1 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGACCTCT
108503427 TTACCCAAAT
Statistics
Matches: 133, Mismatches: 8, Indels: 10
0.88 0.05 0.07
Matches are distributed among these distances:
99 1 0.01
100 50 0.38
101 36 0.27
103 3 0.02
104 1 0.01
105 2 0.02
106 40 0.30
ACGTcount: A:0.21, C:0.29, G:0.24, T:0.26
Consensus pattern (104 bp):
ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGTGATGGTGCCCATGCCATGT
CCCAGACATGGTCTTACAGGGGACCTCTCAATCTTAAGG
Found at i:108503542 original size:13 final size:13
Alignment explanation
Indices: 108503521--108503552 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
108503511 GCTTGGATCA
*
108503521 TCATCAAATAAAT
1 TCATAAAATAAAT
108503534 TCATAAAATAAAT
1 TCATAAAATAAAT
108503547 TCATAA
1 TCATAA
108503553 TTGCTGGAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.56, C:0.12, G:0.00, T:0.31
Consensus pattern (13 bp):
TCATAAAATAAAT
Found at i:108503799 original size:30 final size:30
Alignment explanation
Indices: 108503764--108503821 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 30
108503754 CCTCGACTCT
*
108503764 AACTTTTTCAAAATTACAATTTTGCCCCTA
1 AACTTTTACAAAATTACAATTTTGCCCCTA
* *
108503794 AACTTTTACATAATTACATTTTTGCCCC
1 AACTTTTACAAAATTACAATTTTGCCCC
108503822 AAGGCTCGGA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.31, C:0.24, G:0.03, T:0.41
Consensus pattern (30 bp):
AACTTTTACAAAATTACAATTTTGCCCCTA
Found at i:108505434 original size:20 final size:20
Alignment explanation
Indices: 108505409--108505459 Score: 75
Period size: 20 Copynumber: 2.5 Consensus size: 20
108505399 TCACTTCTCC
108505409 CACGCCCGTGTGATATCCCA
1 CACGCCCGTGTGATATCCCA
* *
108505429 CACGCCCGTTTGATGTCCCA
1 CACGCCCGTGTGATATCCCA
*
108505449 CACACCCGTGT
1 CACGCCCGTGT
108505460 ATACGAACAC
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
20 27 1.00
ACGTcount: A:0.18, C:0.41, G:0.20, T:0.22
Consensus pattern (20 bp):
CACGCCCGTGTGATATCCCA
Found at i:108514765 original size:26 final size:26
Alignment explanation
Indices: 108514696--108514767 Score: 81
Period size: 26 Copynumber: 2.8 Consensus size: 26
108514686 AACTAGTATG
* * *
108514696 AAACAAATTAAAATGAATAATGTATA
1 AAACAAATTAAAATAAATAATATACA
* *
108514722 AAACAATTTAAAACAAATAATATACA
1 AAACAAATTAAAATAAATAATATACA
* *
108514748 AAGCAAATTAAATTAAATAA
1 AAACAAATTAAAATAAATAA
108514768 AAAATGAATA
Statistics
Matches: 37, Mismatches: 9, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
26 37 1.00
ACGTcount: A:0.64, C:0.07, G:0.04, T:0.25
Consensus pattern (26 bp):
AAACAAATTAAAATAAATAATATACA
Found at i:108515026 original size:33 final size:34
Alignment explanation
Indices: 108514987--108515057 Score: 101
Period size: 33 Copynumber: 2.1 Consensus size: 34
108514977 AAGTAAATTT
*
108514987 GAAACAAGTAATATATGAA-AAA-TATATATATAA
1 GAAACAAGTAATATAT-AAGAAAGAATATATATAA
*
108515020 GAAACAAGTAATATATAAGAAAGAATATATGTAA
1 GAAACAAGTAATATATAAGAAAGAATATATATAA
108515054 GAAA
1 GAAA
108515058 TTTAATATAA
Statistics
Matches: 34, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
32 2 0.06
33 19 0.56
34 13 0.38
ACGTcount: A:0.61, C:0.03, G:0.13, T:0.24
Consensus pattern (34 bp):
GAAACAAGTAATATATAAGAAAGAATATATATAA
Found at i:108515035 original size:18 final size:18
Alignment explanation
Indices: 108514987--108515041 Score: 73
Period size: 18 Copynumber: 3.2 Consensus size: 18
108514977 AAGTAAATTT
108514987 GAAACAAGTAATATAT--
1 GAAACAAGTAATATATAA
108515003 GAAA-AA-TATATATATAA
1 GAAACAAGTA-ATATATAA
108515020 GAAACAAGTAATATATAA
1 GAAACAAGTAATATATAA
108515038 GAAA
1 GAAA
108515042 GAATATATGT
Statistics
Matches: 34, Mismatches: 0, Indels: 8
0.81 0.00 0.19
Matches are distributed among these distances:
14 2 0.06
15 8 0.24
16 4 0.12
17 4 0.12
18 14 0.41
19 2 0.06
ACGTcount: A:0.62, C:0.04, G:0.11, T:0.24
Consensus pattern (18 bp):
GAAACAAGTAATATATAA
Found at i:108516842 original size:15 final size:13
Alignment explanation
Indices: 108516813--108516839 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
108516803 GCTCGACAGG
108516813 GACACGCCCGTGT
1 GACACGCCCGTGT
108516826 GACACGCCCGTGT
1 GACACGCCCGTGT
108516839 G
1 G
108516840 TGATTACTTC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.15, C:0.37, G:0.33, T:0.15
Consensus pattern (13 bp):
GACACGCCCGTGT
Found at i:108533328 original size:14 final size:14
Alignment explanation
Indices: 108533309--108533336 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
108533299 TAATTAATCC
108533309 AACATCTAAAAGCT
1 AACATCTAAAAGCT
108533323 AACATCTAAAAGCT
1 AACATCTAAAAGCT
108533337 CCTTCAACTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.50, C:0.21, G:0.07, T:0.21
Consensus pattern (14 bp):
AACATCTAAAAGCT
Found at i:108537387 original size:29 final size:29
Alignment explanation
Indices: 108537345--108537402 Score: 116
Period size: 29 Copynumber: 2.0 Consensus size: 29
108537335 TTTTTTAATT
108537345 CTCCTACAAAAATATTCACATTCTATGTA
1 CTCCTACAAAAATATTCACATTCTATGTA
108537374 CTCCTACAAAAATATTCACATTCTATGTA
1 CTCCTACAAAAATATTCACATTCTATGTA
108537403 AGTATTCAAT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.38, C:0.24, G:0.03, T:0.34
Consensus pattern (29 bp):
CTCCTACAAAAATATTCACATTCTATGTA
Found at i:108544625 original size:35 final size:35
Alignment explanation
Indices: 108544579--108544649 Score: 142
Period size: 35 Copynumber: 2.0 Consensus size: 35
108544569 GTAAAATTTT
108544579 CAATATGCTAAAAAGTAAATTATATTTCACACTAA
1 CAATATGCTAAAAAGTAAATTATATTTCACACTAA
108544614 CAATATGCTAAAAAGTAAATTATATTTCACACTAA
1 CAATATGCTAAAAAGTAAATTATATTTCACACTAA
108544649 C
1 C
108544650 TTTCTTTTAT
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 36 1.00
ACGTcount: A:0.48, C:0.15, G:0.06, T:0.31
Consensus pattern (35 bp):
CAATATGCTAAAAAGTAAATTATATTTCACACTAA
Found at i:108549934 original size:25 final size:25
Alignment explanation
Indices: 108549904--108549961 Score: 80
Period size: 25 Copynumber: 2.3 Consensus size: 25
108549894 ATCAAATTAG
*
108549904 AATGACATGTCACTTTCAGAATCAA
1 AATGACATGTCACTTTCAAAATCAA
* *
108549929 AATGACATTTCATTTTCAAAATCAA
1 AATGACATGTCACTTTCAAAATCAA
*
108549954 AATAACAT
1 AATGACAT
108549962 ATCCATTATT
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 29 1.00
ACGTcount: A:0.45, C:0.17, G:0.07, T:0.31
Consensus pattern (25 bp):
AATGACATGTCACTTTCAAAATCAA
Found at i:108560372 original size:46 final size:46
Alignment explanation
Indices: 108560317--108560544 Score: 323
Period size: 46 Copynumber: 5.0 Consensus size: 46
108560307 AGTGTGCTCT
*
108560317 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAGC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
*
108560363 CTAATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
108560409 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* *** *
108560455 GTGATATGAAATGAACAAGACCATAGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* * * * * *
108560501 ATGACA-GAAAATGAGTAAGACCATAGTTGAAAGACACTATGGCA
1 CTGATATG-AAATGTGTAAGACCATGGTTGAAAGATACCATGGCA
108560545 TCATGTCAAA
Statistics
Matches: 167, Mismatches: 14, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
45 1 0.01
46 166 0.99
ACGTcount: A:0.40, C:0.15, G:0.23, T:0.22
Consensus pattern (46 bp):
CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
Found at i:108564365 original size:21 final size:22
Alignment explanation
Indices: 108564322--108564368 Score: 62
Period size: 22 Copynumber: 2.2 Consensus size: 22
108564312 ATTATATTTT
*
108564322 AATTTTATTTAAAAATAATAAA
1 AATTTAATTTAAAAATAATAAA
*
108564344 AATTTAATTTAATAAT--TAAA
1 AATTTAATTTAAAAATAATAAA
108564364 AATTT
1 AATTT
108564369 TAAAATAATA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
20 9 0.39
22 14 0.61
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (22 bp):
AATTTAATTTAAAAATAATAAA
Found at i:108564377 original size:21 final size:19
Alignment explanation
Indices: 108564335--108564379 Score: 54
Period size: 21 Copynumber: 2.3 Consensus size: 19
108564325 TTTATTTAAA
**
108564335 AATAATAAAAATTTAATTT
1 AATAATAAAAATTTAAAAT
108564354 AATAATTAAAAATTTTAAAAT
1 AATAA-TAAAAA-TTTAAAAT
108564375 AATAA
1 AATAA
108564380 ATTTACATTT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
19 5 0.23
20 6 0.27
21 11 0.50
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (19 bp):
AATAATAAAAATTTAAAAT
Found at i:108567100 original size:19 final size:19
Alignment explanation
Indices: 108567076--108567113 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
108567066 GAAATGAATA
*
108567076 ATTTCAGGCAAATAGGTTG
1 ATTTCAAGCAAATAGGTTG
108567095 ATTTCAAGCAAATAGGTTG
1 ATTTCAAGCAAATAGGTTG
108567114 GCAATCTCAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.34, C:0.11, G:0.24, T:0.32
Consensus pattern (19 bp):
ATTTCAAGCAAATAGGTTG
Found at i:108568004 original size:5 final size:5
Alignment explanation
Indices: 108567985--108568017 Score: 50
Period size: 5 Copynumber: 6.8 Consensus size: 5
108567975 ATATATATAT
*
108567985 ATAAA AT-AA AGAAA ATAAA ATAAA ATAAA ATAA
1 ATAAA ATAAA ATAAA ATAAA ATAAA ATAAA ATAA
108568018 TGAAAAATGA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
4 3 0.12
5 22 0.88
ACGTcount: A:0.79, C:0.00, G:0.03, T:0.18
Consensus pattern (5 bp):
ATAAA
Found at i:108568298 original size:9 final size:8
Alignment explanation
Indices: 108568262--108568312 Score: 52
Period size: 8 Copynumber: 6.5 Consensus size: 8
108568252 AGAGGTTAGG
*
108568262 TTTTTTTC
1 TTTTTTTA
108568270 TTTTTCTT-
1 TTTTT-TTA
* *
108568278 TTTCTTCA
1 TTTTTTTA
108568286 TTTTTTTA
1 TTTTTTTA
108568294 TTTTTTTA
1 TTTTTTTA
108568302 -TTTTTTA
1 TTTTTTTA
108568309 TTTT
1 TTTT
108568313 AGATTGTATT
Statistics
Matches: 36, Mismatches: 4, Indels: 6
0.78 0.09 0.13
Matches are distributed among these distances:
7 8 0.22
8 26 0.72
9 2 0.06
ACGTcount: A:0.08, C:0.08, G:0.00, T:0.84
Consensus pattern (8 bp):
TTTTTTTA
Found at i:108570227 original size:13 final size:11
Alignment explanation
Indices: 108570191--108570221 Score: 53
Period size: 11 Copynumber: 2.8 Consensus size: 11
108570181 CGGCCCACAT
108570191 TAATTTTTATA
1 TAATTTTTATA
*
108570202 TTATTTTTATA
1 TAATTTTTATA
108570213 TAATTTTTA
1 TAATTTTTA
108570222 AATATATATA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (11 bp):
TAATTTTTATA
Found at i:108570447 original size:11 final size:11
Alignment explanation
Indices: 108570413--108570452 Score: 53
Period size: 11 Copynumber: 3.6 Consensus size: 11
108570403 CTATAACAAC
*
108570413 AAAATAGTAGC
1 AAAATAGTAGT
* *
108570424 AACATAATAGT
1 AAAATAGTAGT
108570435 AAAATAGTAGT
1 AAAATAGTAGT
108570446 AAAATAG
1 AAAATAG
108570453 AGAGAAACCA
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
11 24 1.00
ACGTcount: A:0.57, C:0.05, G:0.15, T:0.23
Consensus pattern (11 bp):
AAAATAGTAGT
Found at i:108570891 original size:24 final size:23
Alignment explanation
Indices: 108570859--108570909 Score: 59
Period size: 24 Copynumber: 2.2 Consensus size: 23
108570849 TTATTTGAGT
108570859 ATTAAAAAT-TATAAACTTTTAAAA
1 ATTAAAAATGT-TAAA-TTTTAAAA
* *
108570883 ATTATAAATGTTAAATTTTAAAT
1 ATTAAAAATGTTAAATTTTAAAA
108570906 ATTA
1 ATTA
108570910 GGTATAATTT
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
23 11 0.46
24 12 0.50
25 1 0.04
ACGTcount: A:0.53, C:0.02, G:0.02, T:0.43
Consensus pattern (23 bp):
ATTAAAAATGTTAAATTTTAAAA
Found at i:108572613 original size:15 final size:15
Alignment explanation
Indices: 108572581--108572619 Score: 53
Period size: 15 Copynumber: 2.7 Consensus size: 15
108572571 CGTAAATTAC
**
108572581 TAAAATAT-AATATT
1 TAAAATATAAATAAA
108572595 TAAAATATAAATAAA
1 TAAAATATAAATAAA
108572610 TAAAATATAA
1 TAAAATATAA
108572620 TCTAAAAAAT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
14 8 0.36
15 14 0.64
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (15 bp):
TAAAATATAAATAAA
Found at i:108577075 original size:15 final size:15
Alignment explanation
Indices: 108577055--108577105 Score: 50
Period size: 19 Copynumber: 3.2 Consensus size: 15
108577045 ACTACAAAAA
108577055 ATTTATTATTAATAT
1 ATTTATTATTAATAT
*
108577070 ATTTATAATTGTAATAAAT
1 ATTTATTA-T-TAAT--AT
108577089 ATTTATTATTAA-AT
1 ATTTATTATTAATAT
108577103 ATT
1 ATT
108577106 AATATTGAAT
Statistics
Matches: 30, Mismatches: 2, Indels: 9
0.73 0.05 0.22
Matches are distributed among these distances:
14 5 0.17
15 7 0.23
16 1 0.03
17 7 0.23
18 1 0.03
19 9 0.30
ACGTcount: A:0.43, C:0.00, G:0.02, T:0.55
Consensus pattern (15 bp):
ATTTATTATTAATAT
Found at i:108577213 original size:22 final size:22
Alignment explanation
Indices: 108577173--108577228 Score: 62
Period size: 22 Copynumber: 2.6 Consensus size: 22
108577163 AATAAAATTG
*
108577173 AAATATTAAA-TA-ATTTATTA
1 AAATAATAAATTATATTTATTA
108577193 AAATAATAAATTATATTTATTA
1 AAATAATAAATTATATTTATTA
* * *
108577215 TATTAATAATTTAT
1 AAATAATAAATTAT
108577229 TATATGACTA
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
20 9 0.30
21 2 0.07
22 19 0.63
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (22 bp):
AAATAATAAATTATATTTATTA
Found at i:108577866 original size:19 final size:19
Alignment explanation
Indices: 108577844--108577884 Score: 55
Period size: 19 Copynumber: 2.2 Consensus size: 19
108577834 AATTTAGGTA
* *
108577844 TAGCATGTAAATTTGATTC
1 TAGCATATAAATATGATTC
*
108577863 TAGCCTATAAATATGATTC
1 TAGCATATAAATATGATTC
108577882 TAG
1 TAG
108577885 TATGATTTTA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.34, C:0.12, G:0.15, T:0.39
Consensus pattern (19 bp):
TAGCATATAAATATGATTC
Found at i:108578063 original size:6 final size:6
Alignment explanation
Indices: 108578052--108578080 Score: 58
Period size: 6 Copynumber: 4.8 Consensus size: 6
108578042 GGTTCCATTC
108578052 TTTTTA TTTTTA TTTTTA TTTTTA TTTTT
1 TTTTTA TTTTTA TTTTTA TTTTTA TTTTT
108578081 TTTCTCTGCT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.14, C:0.00, G:0.00, T:0.86
Consensus pattern (6 bp):
TTTTTA
Found at i:108578591 original size:38 final size:40
Alignment explanation
Indices: 108578549--108578681 Score: 119
Period size: 40 Copynumber: 3.4 Consensus size: 40
108578539 TGTAAAACAC
*
108578549 AAACGTCGCTAAAAAATAAAGCAATA-G-CGCTTTCGGTA
1 AAACGCCGCTAAAAAATAAAGCAATACGACGCTTTCGGTA
* * * *
108578587 AAACGCCGCTAAAAACTAGAGCATTAGCGACGCTTTCGGTC
1 AAACGCCGCTAAAAAATAAAGCAATA-CGACGCTTTCGGTA
** * * * * *
108578628 AAACGCCGCT-AAAACCAGAGCATTAGTGTCGCTTTCGATA
1 AAACGCCGCTAAAAAATAAAGCAATA-CGACGCTTTCGGTA
108578668 AAACGCCGCTAAAA
1 AAACGCCGCTAAAA
108578682 GTCATATAAC
Statistics
Matches: 81, Mismatches: 10, Indels: 5
0.84 0.10 0.05
Matches are distributed among these distances:
38 22 0.27
40 36 0.44
41 23 0.28
ACGTcount: A:0.37, C:0.24, G:0.20, T:0.20
Consensus pattern (40 bp):
AAACGCCGCTAAAAAATAAAGCAATACGACGCTTTCGGTA
Found at i:108578632 original size:41 final size:41
Alignment explanation
Indices: 108578576--108578681 Score: 160
Period size: 40 Copynumber: 2.6 Consensus size: 41
108578566 AAAGCAATAG
*
108578576 CGCTTTCGGTAAAACGCCGCTAAAAACTAGAGCATTAGCGA
1 CGCTTTCGGTAAAACGCCGCTAAAAACCAGAGCATTAGCGA
* * *
108578617 CGCTTTCGGTCAAACGCCGCT-AAAACCAGAGCATTAGTGT
1 CGCTTTCGGTAAAACGCCGCTAAAAACCAGAGCATTAGCGA
*
108578657 CGCTTTCGATAAAACGCCGCTAAAA
1 CGCTTTCGGTAAAACGCCGCTAAAA
108578682 GTCATATAAC
Statistics
Matches: 58, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
40 35 0.60
41 23 0.40
ACGTcount: A:0.32, C:0.26, G:0.21, T:0.21
Consensus pattern (41 bp):
CGCTTTCGGTAAAACGCCGCTAAAAACCAGAGCATTAGCGA
Found at i:108578761 original size:16 final size:16
Alignment explanation
Indices: 108578736--108578786 Score: 61
Period size: 16 Copynumber: 3.2 Consensus size: 16
108578726 ACTGATTTAT
*
108578736 AACCCGTAAAACACTA
1 AACCCCTAAAACACTA
108578752 AACCCCTAAAAC-CTAAA
1 AACCCCTAAAACACT--A
108578769 AACCCCT-AAACACTA
1 AACCCCTAAAACACTA
108578784 AAC
1 AAC
108578787 TATAACCTCT
Statistics
Matches: 31, Mismatches: 1, Indels: 7
0.79 0.03 0.18
Matches are distributed among these distances:
15 6 0.19
16 15 0.48
17 10 0.32
ACGTcount: A:0.51, C:0.35, G:0.02, T:0.12
Consensus pattern (16 bp):
AACCCCTAAAACACTA
Found at i:108579923 original size:8 final size:8
Alignment explanation
Indices: 108579900--108579951 Score: 74
Period size: 8 Copynumber: 6.9 Consensus size: 8
108579890 GTTTTCATTT
108579900 AATTTAAA
1 AATTTAAA
108579908 AA--TAAA
1 AATTTAAA
108579914 AATTTAAA
1 AATTTAAA
108579922 AATTTAAA
1 AATTTAAA
*
108579930 AA-TAAAA
1 AATTTAAA
108579937 AATTTAAA
1 AATTTAAA
108579945 AATTTAA
1 AATTTAA
108579952 TATTTAATAT
Statistics
Matches: 39, Mismatches: 2, Indels: 6
0.83 0.04 0.13
Matches are distributed among these distances:
6 6 0.15
7 6 0.15
8 27 0.69
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (8 bp):
AATTTAAA
Found at i:108579927 original size:22 final size:23
Alignment explanation
Indices: 108579900--108579951 Score: 97
Period size: 23 Copynumber: 2.3 Consensus size: 23
108579890 GTTTTCATTT
108579900 AATTTAAAAAT-AAAAATTTAAA
1 AATTTAAAAATAAAAAATTTAAA
108579922 AATTTAAAAATAAAAAATTTAAA
1 AATTTAAAAATAAAAAATTTAAA
108579945 AATTTAA
1 AATTTAA
108579952 TATTTAATAT
Statistics
Matches: 29, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
22 11 0.38
23 18 0.62
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (23 bp):
AATTTAAAAATAAAAAATTTAAA
Found at i:108579930 original size:15 final size:15
Alignment explanation
Indices: 108579900--108579958 Score: 66
Period size: 15 Copynumber: 3.9 Consensus size: 15
108579890 GTTTTCATTT
*
108579900 AATTTAAAA-ATAAA
1 AATTTAAAATTTAAA
108579914 AATTTAAAAATTTAAA
1 AATTT-AAAATTTAAA
**
108579930 AATAAAAAATTTAAA
1 AATTTAAAATTTAAA
*
108579945 AATTTAATATTTAA
1 AATTTAAAATTTAA
108579959 TATTTTAATT
Statistics
Matches: 37, Mismatches: 6, Indels: 3
0.80 0.13 0.07
Matches are distributed among these distances:
14 5 0.14
15 25 0.68
16 7 0.19
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (15 bp):
AATTTAAAATTTAAA
Found at i:108583450 original size:23 final size:23
Alignment explanation
Indices: 108583420--108583635 Score: 158
Period size: 23 Copynumber: 9.4 Consensus size: 23
108583410 TGGCTGTTGT
108583420 TGTTTAAATGCTGCAAATTGAAG
1 TGTTTAAATGCTGCAAATTGAAG
**
108583443 TGTTTAAATGCTATAAATTGAAG
1 TGTTTAAATGCTGCAAATTGAAG
* * *
108583466 CGTTTAAATGTTGTAAATTGAAG
1 TGTTTAAATGCTGCAAATTGAAG
* *
108583489 TGTTTAAGTACTGCAAATTGAAG
1 TGTTTAAATGCTGCAAATTGAAG
** *
108583512 TGTTTAGTTGCTGGAAATTG-AG
1 TGTTTAAATGCTGCAAATTGAAG
*
108583534 ATGTTT-TAT-C-GCTATAATTG-AG
1 -TGTTTAAATGCTGC-A-AATTGAAG
* * **
108583556 TTGTATAAATGTTGTTAATTG-AG
1 -TGTTTAAATGCTGCAAATTGAAG
* *
108583579 ATG-TTAAAGTACTGCAAAATGAAG
1 -TGTTTAAA-TGCTGCAAATTGAAG
*
108583603 TGTTTAAATGCTGTAAATTGAAG
1 TGTTTAAATGCTGCAAATTGAAG
*
108583626 TGCTTAAATG
1 TGTTTAAATG
108583636 TTATACAAGA
Statistics
Matches: 150, Mismatches: 34, Indels: 18
0.74 0.17 0.09
Matches are distributed among these distances:
20 1 0.01
21 2 0.01
22 18 0.12
23 121 0.81
24 7 0.05
25 1 0.01
ACGTcount: A:0.34, C:0.06, G:0.22, T:0.38
Consensus pattern (23 bp):
TGTTTAAATGCTGCAAATTGAAG
Found at i:108583473 original size:46 final size:46
Alignment explanation
Indices: 108583420--108583640 Score: 175
Period size: 46 Copynumber: 4.8 Consensus size: 46
108583410 TGGCTGTTGT
*
108583420 TGTTTAAATGCTGCAAATTGAAGTGTTTAAATGCTATAAATTGAAG
1 TGTTTAAATGCTGTAAATTGAAGTGTTTAAATGCTATAAATTGAAG
* * * * **
108583466 CGTTTAAATGTTGTAAATTGAAGTGTTTAAGTACTGCAAATTGAAG
1 TGTTTAAATGCTGTAAATTGAAGTGTTTAAATGCTATAAATTGAAG
** * *
108583512 TGTTTAGTTGCTGGAAATTG-AGATGTTT-TATCGCTAT-AATTG-AG
1 TGTTTAAATGCTGTAAATTGAAG-TGTTTAAAT-GCTATAAATTGAAG
* * * * ** *
108583556 TTGTATAAATGTTGTTAATTG-AGATG-TTAAAGTACTGCAAAATGAAG
1 -TGTTTAAATGCTGTAAATTGAAG-TGTTTAAA-TGCTATAAATTGAAG
* *
108583603 TGTTTAAATGCTGTAAATTGAAGTGCTTAAATGTTATA
1 TGTTTAAATGCTGTAAATTGAAGTGTTTAAATGCTATA
108583641 CAAGATCTTA
Statistics
Matches: 131, Mismatches: 35, Indels: 18
0.71 0.19 0.10
Matches are distributed among these distances:
44 4 0.03
45 30 0.23
46 88 0.67
47 9 0.07
ACGTcount: A:0.34, C:0.06, G:0.21, T:0.39
Consensus pattern (46 bp):
TGTTTAAATGCTGTAAATTGAAGTGTTTAAATGCTATAAATTGAAG
Found at i:108584597 original size:23 final size:23
Alignment explanation
Indices: 108584571--108585870 Score: 920
Period size: 23 Copynumber: 56.8 Consensus size: 23
108584561 TAAATGTTGC
*
108584571 AAATTGAAGTGTTTAAGTACTGT
1 AAATTGAAGTGTTTAAGTGCTGT
* *
108584594 AAATTGAAGTGTTTAATTGCTGG
1 AAATTGAAGTGTTTAAGTGCTGT
*
108584617 AAATTG-AGATGTTTTA-TCGCTGT
1 AAATTGAAG-TGTTTAAGT-GCTGT
* * * *
108584640 -AATTGAGGTGTATAAATGTTGT
1 AAATTGAAGTGTTTAAGTGCTGT
* * * *
108584662 TAATTGAAATGTTAAAGTGCTGC
1 AAATTGAAGTGTTTAAGTGCTGT
108584685 AAATTGAAGTGTTTTAA-TGCTGT
1 AAATTGAAGTG-TTTAAGTGCTGT
* * *
108584708 AAATTGAAGTGTTAAACTGCTGC
1 AAATTGAAGTGTTTAAGTGCTGT
108584731 AAATTGAAGTGTTTGAA-TGCTGT
1 AAATTGAAGTGTTT-AAGTGCTGT
*
108584754 AAATTGAAGTGTTTAAATGCTGT
1 AAATTGAAGTGTTTAAGTGCTGT
* * * *
108584777 AAATTGAAGTGCTTAAATGTTGC
1 AAATTGAAGTGTTTAAGTGCTGT
* *
108584800 AAATTGAAGTGTTTAAGTACTGC
1 AAATTGAAGTGTTTAAGTGCTGT
*
108584823 AAATTGAAGTGTTT-AGTTGCTGG
1 AAATTGAAGTGTTTAAG-TGCTGT
* * *
108584846 ACATTG-AGATGTTTTA-TCGTTGT
1 AAATTGAAG-TGTTTAAGT-GCTGT
* * * *
108584869 -AATTGAGGTGTATAAATGTTGT
1 AAATTGAAGTGTTTAAGTGCTGT
* * * *
108584891 TAATTGAGGTGTTAAAGTGCTGC
1 AAATTGAAGTGTTTAAGTGCTGT
108584914 AAATTGAAGTGTTTTAA-TGCTGT
1 AAATTGAAGTG-TTTAAGTGCTGT
* * *
108584937 AAATTGAAGTGTTAAACTGCTGC
1 AAATTGAAGTGTTTAAGTGCTGT
108584960 AAATTGAAGTGTTTGAA-TGCTGT
1 AAATTGAAGTGTTT-AAGTGCTGT
* *
108584983 AAAATT-AAATGTTTAAATGCTGT
1 -AAATTGAAGTGTTTAAGTGCTGT
* * * *
108585006 AAATTGAAGTGCTTAAATGTTGC
1 AAATTGAAGTGTTTAAGTGCTGT
* *
108585029 AAATTGAAGTGTTTAAGTACTGC
1 AAATTGAAGTGTTTAAGTGCTGT
*
108585052 AAATTGAAGTGTTT-AGTTGCTGG
1 AAATTGAAGTGTTTAAG-TGCTGT
* * *
108585075 ACATTG-AGATGTTTTA-TCGCTAT
1 AAATTGAAG-TGTTTAAGT-GCTGT
* * * *
108585098 -AATTGAGGTGTATAAATGTTGT
1 AAATTGAAGTGTTTAAGTGCTGT
* * * *
108585120 TAATTGAGGTGTTAAAGTGCTGG
1 AAATTGAAGTGTTTAAGTGCTGT
* *
108585143 AAATTGAAGTGTTTGACTGCTGT
1 AAATTGAAGTGTTTAAGTGCTGT
*
108585166 AAATTGAAGTGTTTAAATGCTGT
1 AAATTGAAGTGTTTAAGTGCTGT
* * *
108585189 AAATTGAAGTGTTTAAATGTTGC
1 AAATTGAAGTGTTTAAGTGCTGT
* * *
108585212 AAATTGAATTGTTTAAGTACTGC
1 AAATTGAAGTGTTTAAGTGCTGT
*
108585235 AAATTGAAGTGTTT-AGTTGCTGG
1 AAATTGAAGTGTTTAAG-TGCTGT
* * *
108585258 ACATTG-AGATGTTTTA-TCGTTGT
1 AAATTGAAG-TGTTTAAGT-GCTGT
* * * *
108585281 -AATTGAGGTGTATAAATGTTGT
1 AAATTGAAGTGTTTAAGTGCTGT
* * *
108585303 TAATTG-AGATGTTAAAGTGCTGC
1 AAATTGAAG-TGTTTAAGTGCTGT
* *
108585326 AAATTGAAGTGCTTAAATGCTGT
1 AAATTGAAGTGTTTAAGTGCTGT
* *
108585349 AAATTGAAGTGTTAAAGTGCTGC
1 AAATTGAAGTGTTTAAGTGCTGT
* *
108585372 AAATTGAACTGTTTGAA-TGTTGT
1 AAATTGAAGTGTTT-AAGTGCTGT
*
108585395 AAATTGAAGTGTTTAAATGCTGT
1 AAATTGAAGTGTTTAAGTGCTGT
* * * * *
108585418 AAATTGAAATGCTTAAATGTTGC
1 AAATTGAAGTGTTTAAGTGCTGT
* *
108585441 AAATTGAAGTGTTTAAGTACTGC
1 AAATTGAAGTGTTTAAGTGCTGT
*
108585464 AAATTGAAGTGTTT-AGTTGCTGG
1 AAATTGAAGTGTTTAAG-TGCTGT
* * *
108585487 ACATTG-AGATGTTTTA-TCCCTGT
1 AAATTGAAG-TGTTTAAGT-GCTGT
* * * *
108585510 -AATTGAGGTGTATAAATGTTGT
1 AAATTGAAGTGTTTAAGTGCTGT
* * *
108585532 TAATTG-AGATGTTAAAGTGCTGC
1 AAATTGAAG-TGTTTAAGTGCTGT
* *
108585555 AAATTGAAGTGCTTAAATGCTGT
1 AAATTGAAGTGTTTAAGTGCTGT
* *
108585578 AAATTGAAGTGTTAAAGTGCTGC
1 AAATTGAAGTGTTTAAGTGCTGT
*
108585601 AAATTGAACTGTTTGAA-TGCTGT
1 AAATTGAAGTGTTT-AAGTGCTGT
* * *
108585624 AAATTGAAGTGTTTAAATGTTGC
1 AAATTGAAGTGTTTAAGTGCTGT
* * *
108585647 AAATTGAAGTGCTTAAGTACTGC
1 AAATTGAAGTGTTTAAGTGCTGT
*
108585670 AAATTGAAGTGTTT-AGTTGCTGG
1 AAATTGAAGTGTTTAAG-TGCTGT
* * * *
108585693 ACATTG-AGATGTTTTATTACTGT
1 AAATTGAAG-TGTTTAAGTGCTGT
* * * **
108585716 -AATTGAGGTGTATAAATATTGT
1 AAATTGAAGTGTTTAAGTGCTGT
* *
108585738 TAATTG-AGATGTTAAAGTGCTGT
1 AAATTGAAG-TGTTTAAGTGCTGT
* *
108585761 AAATTGAAGTGTTAAAGTGCTGC
1 AAATTGAAGTGTTTAAGTGCTGT
*
108585784 AAATTGAAGTGTTTGAA-TGCTGC
1 AAATTGAAGTGTTT-AAGTGCTGT
* *
108585807 AAATTCAAGTGTTTAAATGCTGT
1 AAATTGAAGTGTTTAAGTGCTGT
* * * *
108585830 AAATTGAAGTGCTTAAATGTTGC
1 AAATTGAAGTGTTTAAGTGCTGT
108585853 AAATTGAAGTGTTTAAGT
1 AAATTGAAGTGTTTAAGT
108585871 ACTTATTTTG
Statistics
Matches: 1019, Mismatches: 198, Indels: 120
0.76 0.15 0.09
Matches are distributed among these distances:
22 133 0.13
23 852 0.84
24 34 0.03
ACGTcount: A:0.32, C:0.07, G:0.24, T:0.38
Consensus pattern (23 bp):
AAATTGAAGTGTTTAAGTGCTGT
Found at i:108584962 original size:229 final size:227
Alignment explanation
Indices: 108584561--108585684 Score: 1291
Period size: 229 Copynumber: 4.9 Consensus size: 227
108584551 ATATTAGTGG
108584561 TAAATGTTGCAAATTGAAGTGTTTAAGTACTGTAAATTGAAGTGTTTAATTGCTGGAAATTGAGA
1 TAAATGTTGCAAATTGAAGTGTTTAAGTACTG-AAATTGAAGTGTTTAATTGCTGG-AATTGAGA
*
108584626 TGTTTTATCGCTGTAATTGAGGTGTATAAATGTTGTTAATTGAAATGTTAAAGTGCTGCAAATTG
64 TGTTTTATCGCTGTAATTGAGGTGTATAAATGTTGTTAATTGAAGTGTTAAAGTGCTGCAAATTG
* * *
108584691 AAGTGTTTTAATGCTGTAAATTGAAGTG-TTAAACTGCTGCAAATTGAAGTGTTTGAATGCTGTA
129 AAGTGTTTGAATGCTGTAAATTGAAGTGTTTAAA-TGCTGCAAATTGAAGTGTTTAAATGCTGCA
* *
108584755 AATTGAAGTGTTTAAATGCTGTAAATTGAAGTGCT
193 AATTGAAGTGTTTAAATACTGCAAATTGAAGTGCT
*
108584790 TAAATGTTGCAAATTGAAGTGTTTAAGTACTGCAAATTGAAGTGTTTAGTTGCTGGACATTGAGA
1 TAAATGTTGCAAATTGAAGTGTTTAAGTACTG-AAATTGAAGTGTTTAATTGCTGGA-ATTGAGA
* *
108584855 TGTTTTATCGTTGTAATTGAGGTGTATAAATGTTGTTAATTGAGGTGTTAAAGTGCTGCAAATTG
64 TGTTTTATCGCTGTAATTGAGGTGTATAAATGTTGTTAATTGAAGTGTTAAAGTGCTGCAAATTG
* * *
108584920 AAGTGTTTTAATGCTGTAAATTGAAGTG-TTAAACTGCTGCAAATTGAAGTGTTTGAATGCTGTA
129 AAGTGTTTGAATGCTGTAAATTGAAGTGTTTAAA-TGCTGCAAATTGAAGTGTTTAAATGCTG-C
* * *
108584984 AAATT-AAATGTTTAAATGCTGTAAATTGAAGTGCT
192 AAATTGAAGTGTTTAAATACTGCAAATTGAAGTGCT
*
108585019 TAAATGTTGCAAATTGAAGTGTTTAAGTACTGCAAATTGAAGTGTTTAGTTGCTGGACATTGAGA
1 TAAATGTTGCAAATTGAAGTGTTTAAGTACTG-AAATTGAAGTGTTTAATTGCTGGA-ATTGAGA
* * *
108585084 TGTTTTATCGCTATAATTGAGGTGTATAAATGTTGTTAATTGAGGTGTTAAAGTGCTGGAAATTG
64 TGTTTTATCGCTGTAATTGAGGTGTATAAATGTTGTTAATTGAAGTGTTAAAGTGCTGCAAATTG
* * *
108585149 AAGTGTTTGACTGCTGTAAATTGAAGTGTTTAAATGCTGTAAATTGAAGTGTTTAAATGTTGCAA
129 AAGTGTTTGAATGCTGTAAATTGAAGTGTTTAAATGCTGCAAATTGAAGTGTTTAAATGCTGCAA
* * *
108585214 ATTGAATTGTTTAAGTACTGCAAATTGAAGTGTT
194 ATTGAAGTGTTTAAATACTGCAAATTGAAGTGCT
** * * * * * * * * * *
108585248 TAGTTGCTGGACATTG-AGATGTTTTA-T-CGTTGTAATTGAGGTGTATAAATGTTGTTAATTGA
1 TAAATGTTGCAAATTGAAG-TGTTTAAGTAC--TGAAATTGAAGTGTTTAATTGCTG-GAATTGA
** * * * *
108585310 GATGTTAAAGT-GCTGCAAATTGAAGTGCT-TAAATGCTGTAAATTGAAGTGTTAAAGTGCTGCA
62 GATGTTTTA-TCGCTG-TAATTGAGGTG-TATAAATGTTGTTAATTGAAGTGTTAAAGTGCTGCA
* * * * * *
108585373 AATTGAACTGTTTGAATGTTGTAAATTGAAGTGTTTAAATGCTGTAAATTGAAATGCTTAAATGT
124 AATTGAAGTGTTTGAATGCTGTAAATTGAAGTGTTTAAATGCTGCAAATTGAAGTGTTTAAATGC
* *
108585438 TGCAAATTGAAGTGTTTAAGTACTGCAAATTGAAGTGTT
189 TGCAAATTGAAGTGTTTAAATACTGCAAATTGAAGTGCT
** * * * * * * * * * * *
108585477 TAGTTGCTGGACATTG-AGATGTTTTA-TCCCTGTAATTGAGGTGTATAAATGTTGTTAATTGAG
1 TAAATGTTGCAAATTGAAG-TGTTTAAGT-ACTGAAATTGAAGTGTTTAATTGCTG-GAATTGAG
** * * * *
108585540 ATGTTAAAGT-GCTGCAAATTGAAGTGCT-TAAATGCTGTAAATTGAAGTGTTAAAGTGCTGCAA
63 ATGTTTTA-TCGCTG-TAATTGAGGTG-TATAAATGTTGTTAATTGAAGTGTTAAAGTGCTGCAA
* * * * *
108585603 ATTGAACTGTTTGAATGCTGTAAATTGAAGTGTTTAAATGTTGCAAATTGAAGTGCTTAAGTACT
125 ATTGAAGTGTTTGAATGCTGTAAATTGAAGTGTTTAAATGCTGCAAATTGAAGTGTTTAAATGCT
108585668 GCAAATTGAAGTGTTTA
190 GCAAATTGAAGTGTTTA
108585685 GTTGCTGGAC
Statistics
Matches: 826, Mismatches: 56, Indels: 26
0.91 0.06 0.03
Matches are distributed among these distances:
227 1 0.00
228 40 0.05
229 773 0.94
230 11 0.01
231 1 0.00
ACGTcount: A:0.32, C:0.07, G:0.24, T:0.38
Consensus pattern (227 bp):
TAAATGTTGCAAATTGAAGTGTTTAAGTACTGAAATTGAAGTGTTTAATTGCTGGAATTGAGATG
TTTTATCGCTGTAATTGAGGTGTATAAATGTTGTTAATTGAAGTGTTAAAGTGCTGCAAATTGAA
GTGTTTGAATGCTGTAAATTGAAGTGTTTAAATGCTGCAAATTGAAGTGTTTAAATGCTGCAAAT
TGAAGTGTTTAAATACTGCAAATTGAAGTGCT
Found at i:108585168 original size:183 final size:182
Alignment explanation
Indices: 108584915--108585425 Score: 754
Period size: 183 Copynumber: 2.8 Consensus size: 182
108584905 AAGTGCTGCA
* * * * * * *
108584915 AATTGAAGTGTTTTAATGCTGTAAATTGAAGTGTTAAACTGCTGCAAATTGAAGTGTTTGAATGC
1 AATTGAGGTGTATAAATGTTGTTAATTGAGGTGTTAAAGTGCTGCAAATTGAAGTGTTTGAATGC
*
108584980 TGTAAAATTAAATGTTTAAATGCTGTAAATTGAAGTGCTTAAATGTTGCAAATTGAAGTGTTTAA
66 TGT-AAATTAAATGTTTAAATGCTGTAAATTGAAGTGTTTAAATGTTGCAAATTGAAGTGTTTAA
108585045 GTACTGCAAATTGAAGTGTTTAGTTGCTGGACATTGAGATGTTTTATCGCTAT
130 GTACTGCAAATTGAAGTGTTTAGTTGCTGGACATTGAGATGTTTTATCGCTAT
* *
108585098 AATTGAGGTGTATAAATGTTGTTAATTGAGGTGTTAAAGTGCTGGAAATTGAAGTGTTTGACTGC
1 AATTGAGGTGTATAAATGTTGTTAATTGAGGTGTTAAAGTGCTGCAAATTGAAGTGTTTGAATGC
* *
108585163 TGTAAATTGAAGTGTTTAAATGCTGTAAATTGAAGTGTTTAAATGTTGCAAATTGAATTGTTTAA
66 TGTAAATT-AAATGTTTAAATGCTGTAAATTGAAGTGTTTAAATGTTGCAAATTGAAGTGTTTAA
* *
108585228 GTACTGCAAATTGAAGTGTTTAGTTGCTGGACATTGAGATGTTTTATCGTTGT
130 GTACTGCAAATTGAAGTGTTTAGTTGCTGGACATTGAGATGTTTTATCGCTAT
* * *
108585281 AATTGAGGTGTATAAATGTTGTTAATTGAGATGTTAAAGTGCTGCAAATTGAAGTGCTTAAATGC
1 AATTGAGGTGTATAAATGTTGTTAATTGAGGTGTTAAAGTGCTGCAAATTGAAGTGTTTGAATGC
* * * * *
108585346 TGTAAATTGAA-GTGTTAAAGTGCTGCAAATTGAACTGTTTGAATGTTGTAAATTGAAGTGTTTA
66 TGTAAATTAAATGT-TTAAA-TGCTGTAAATTGAAGTGTTTAAATGTTGCAAATTGAAGTGTTTA
* * *
108585410 AATGCTGTAAATTGAA
129 AGTACTGCAAATTGAA
108585426 ATGCTTAAAT
Statistics
Matches: 296, Mismatches: 29, Indels: 6
0.89 0.09 0.02
Matches are distributed among these distances:
181 2 0.01
182 11 0.04
183 283 0.96
ACGTcount: A:0.32, C:0.06, G:0.23, T:0.38
Consensus pattern (182 bp):
AATTGAGGTGTATAAATGTTGTTAATTGAGGTGTTAAAGTGCTGCAAATTGAAGTGTTTGAATGC
TGTAAATTAAATGTTTAAATGCTGTAAATTGAAGTGTTTAAATGTTGCAAATTGAAGTGTTTAAG
TACTGCAAATTGAAGTGTTTAGTTGCTGGACATTGAGATGTTTTATCGCTAT
Found at i:108585347 original size:412 final size:410
Alignment explanation
Indices: 108584686--108585868 Score: 1765
Period size: 412 Copynumber: 2.8 Consensus size: 410
108584676 AAGTGCTGCA
* * * * * * *
108584686 AATTGAAGTGTTTTAATGCTGTAAATTGAAGTGTTAAACTGCTGCAAATTGAAGTGTTTGAATGC
1 AATTGAGGTGTATAAATGTTGTTAATTGAGGTGTTAAAGTGCTGCAAATTGAAGTGTTTGAATGC
*
108584751 TGTAAATTGAAGTGTTTAAATGCTGTAAATTGAAGTGCTTAAATGTTGCAAATTGAAGTGTTTAA
66 TGTAAATTGAAGTGTTTAAATGCTGTAAATTGAAGTGTTTAAATGTTGCAAATTGAAGTGTTTAA
108584816 GTACTGCAAATTGAAGTGTTTAGTTGCTGGACATTGAGATGTTTTATCGTTGTAATTGAGGTGTA
131 GTACTGCAAATTGAAGTGTTTAGTTGCTGGACATTGAGATGTTTTATCGTTGTAATTGAGGTGTA
* *
108584881 TAAATGTTGTTAATTGAGGTGTTAAAGTGCTGCAAATTGAAGTGTTTTAATGCTGTAAATTGAAG
196 TAAATGTTGTTAATTGAGATGTTAAAGTGCTGCAAATTGAAGTG-TTAAATGCTGTAAATTGAAG
*
108584946 TGTTAAACTGCTGCAAATTGAAGTGTTTGAATGCTGTAAAATT-AAATGTTTAAATGCTGTAAAT
260 TGTTAAA-TGCTGCAAATTGAAGTGTTTGAATGCTGT-AAATTGAAGTGTTTAAATGCTGTAAAT
108585010 TGAAGTGCTTAAATGTTGCAAATTGAAGTGTTTAAGTACTGCAAATTGAAGTGTTTAGTTGCTGG
323 TGAAGTGCTTAAATGTTGCAAATTGAAGTGTTTAAGTACTGCAAATTGAAGTGTTTAGTTGCTGG
*
108585075 ACATTGAGATGTTTTATCGCTAT
388 ACATTGAGATGTTTTATCCCTAT
* *
108585098 AATTGAGGTGTATAAATGTTGTTAATTGAGGTGTTAAAGTGCTGGAAATTGAAGTGTTTGACTGC
1 AATTGAGGTGTATAAATGTTGTTAATTGAGGTGTTAAAGTGCTGCAAATTGAAGTGTTTGAATGC
*
108585163 TGTAAATTGAAGTGTTTAAATGCTGTAAATTGAAGTGTTTAAATGTTGCAAATTGAATTGTTTAA
66 TGTAAATTGAAGTGTTTAAATGCTGTAAATTGAAGTGTTTAAATGTTGCAAATTGAAGTGTTTAA
108585228 GTACTGCAAATTGAAGTGTTTAGTTGCTGGACATTGAGATGTTTTATCGTTGTAATTGAGGTGTA
131 GTACTGCAAATTGAAGTGTTTAGTTGCTGGACATTGAGATGTTTTATCGTTGTAATTGAGGTGTA
108585293 TAAATGTTGTTAATTGAGATGTTAAAGTGCTGCAAATTGAAGTGCTTAAATGCTGTAAATTGAAG
196 TAAATGTTGTTAATTGAGATGTTAAAGTGCTGCAAATTGAAGTG-TTAAATGCTGTAAATTGAAG
* *
108585358 TGTTAAAGTGCTGCAAATTGAACTGTTTGAATGTTGTAAATTGAAGTGTTTAAATGCTGTAAATT
260 TGTTAAA-TGCTGCAAATTGAAGTGTTTGAATGCTGTAAATTGAAGTGTTTAAATGCTGTAAATT
*
108585423 GAAATGCTTAAATGTTGCAAATTGAAGTGTTTAAGTACTGCAAATTGAAGTGTTTAGTTGCTGGA
324 GAAGTGCTTAAATGTTGCAAATTGAAGTGTTTAAGTACTGCAAATTGAAGTGTTTAGTTGCTGGA
*
108585488 CATTGAGATGTTTTATCCCTGT
389 CATTGAGATGTTTTATCCCTAT
*
108585510 AATTGAGGTGTATAAATGTTGTTAATTGAGATGTTAAAGTGCTGCAAATTGAAGTGCTTAAATGC
1 AATTGAGGTGTATAAATGTTGTTAATTGAGGTGTTAAAGTGCTGCAAATTGAAGTG--T---T--
* *
108585575 TGTAAATTGAAGTGTTAAAGTGCTGCAAATTGAACTGTTTGAATGCTGTAAATTGAAGTGTTTAA
59 TG--AA-TG--CTG-TAAA-T--TG--AA--G---TGTTTAAATGCTGTAAATTGAAGTGTTTAA
*
108585640 ATGTTGCAAATTGAAGTGCTTAAGTACTGCAAATTGAAGTGTTTAGTTGCTGGACATTGAGATGT
108 ATGTTGCAAATTGAAGTGTTTAAGTACTGCAAATTGAAGTGTTTAGTTGCTGGACATTGAGATGT
*** * *
108585705 TTTATTACTGTAATTGAGGTGTATAAATATTGTTAATTGAGATGTTAAAGTGCTGTAAATTGAAG
173 TTTATCGTTGTAATTGAGGTGTATAAATGTTGTTAATTGAGATGTTAAAGTGCTGCAAATTGAAG
* * * *
108585770 TGTTAAAGTGCTGCAAATTGAAGTGTTTGAATGCTGCAAATTCAAGTGTTTAAATGCTGTAAATT
238 TGTTAAA-TGCTGTAAATTGAAGTG-TTAAATGCTGCAAATTGAAGTGTTTGAATGCTGTAAATT
* * * *
108585835 GAAGTGCTTAAATGTTGCAAATTGAAGTGTTTAA
301 GAAGTGTTTAAATGCTGTAAATTGAAGTGCTTAA
108585869 GTACTTATTT
Statistics
Matches: 701, Mismatches: 44, Indels: 29
0.91 0.06 0.04
Matches are distributed among these distances:
411 5 0.01
412 439 0.63
414 1 0.00
417 1 0.00
419 2 0.00
421 1 0.00
422 2 0.00
424 2 0.00
425 4 0.01
426 1 0.00
428 2 0.00
430 2 0.00
432 1 0.00
434 5 0.01
435 229 0.33
436 4 0.01
ACGTcount: A:0.32, C:0.07, G:0.24, T:0.38
Consensus pattern (410 bp):
AATTGAGGTGTATAAATGTTGTTAATTGAGGTGTTAAAGTGCTGCAAATTGAAGTGTTTGAATGC
TGTAAATTGAAGTGTTTAAATGCTGTAAATTGAAGTGTTTAAATGTTGCAAATTGAAGTGTTTAA
GTACTGCAAATTGAAGTGTTTAGTTGCTGGACATTGAGATGTTTTATCGTTGTAATTGAGGTGTA
TAAATGTTGTTAATTGAGATGTTAAAGTGCTGCAAATTGAAGTGTTAAATGCTGTAAATTGAAGT
GTTAAATGCTGCAAATTGAAGTGTTTGAATGCTGTAAATTGAAGTGTTTAAATGCTGTAAATTGA
AGTGCTTAAATGTTGCAAATTGAAGTGTTTAAGTACTGCAAATTGAAGTGTTTAGTTGCTGGACA
TTGAGATGTTTTATCCCTAT
Found at i:108585720 original size:137 final size:138
Alignment explanation
Indices: 108585574--108585821 Score: 319
Period size: 137 Copynumber: 1.8 Consensus size: 138
108585564 TGCTTAAATG
* *
108585574 CTGTAAATTGAAGTGT-TAAAGTGCTGCAAATTGA-ACTGTTTGAA-TGCTGTAAATTGAAGTGT
1 CTGTAAATTGAAGTGTATAAA-TACTGCAAATTGAGA-TG-TTAAAGTGCTGTAAATTGAAGTG-
* *
108585636 TTAAA-TGTTGCAAATTGAAGTGCTT-AAGTACTGCAAATTGAAGTGTTTAGTTGCTGGACATTG
62 TTAAAGTGCTGCAAATTGAAGTGCTTGAA-TACTGCAAATTCAAGTGTTTAGTTGCTGGACATTG
108585699 AGATGTTTTATTA
126 AGATGTTTTATTA
* * **
108585712 CTGT-AATTGAGGTGTATAAATATTGTTAATTGAGATGTTAAAGTGCTGTAAATTGAAGTGTTAA
1 CTGTAAATTGAAGTGTATAAATACTGCAAATTGAGATGTTAAAGTGCTGTAAATTGAAGTGTTAA
* *
108585776 AGTGCTGCAAATTGAAGTGTTTGAATGCTGCAAATTCAAGTGTTTA
66 AGTGCTGCAAATTGAAGTGCTTGAATACTGCAAATTCAAGTGTTTA
108585822 AATGCTGTAA
Statistics
Matches: 95, Mismatches: 10, Indels: 11
0.82 0.09 0.09
Matches are distributed among these distances:
136 9 0.09
137 75 0.79
138 11 0.12
ACGTcount: A:0.32, C:0.07, G:0.23, T:0.38
Consensus pattern (138 bp):
CTGTAAATTGAAGTGTATAAATACTGCAAATTGAGATGTTAAAGTGCTGTAAATTGAAGTGTTAA
AGTGCTGCAAATTGAAGTGCTTGAATACTGCAAATTCAAGTGTTTAGTTGCTGGACATTGAGATG
TTTTATTA
Found at i:108585744 original size:229 final size:223
Alignment explanation
Indices: 108584571--108585868 Score: 1086
Period size: 229 Copynumber: 5.7 Consensus size: 223
108584561 TAAATGTTGC
* * * * * **
108584571 AAATTGAAGTGTTTAAGTACTGTAAATTGAAGTGTTTAATTGCTG-GAAATTGAGATGTTTTA-T
1 AAATTGAGGTG-TTAAATACTGT-AATTGAGGTGTATAAATGCTGTG-AATTGAGATGTTAAAGT
* * * * *
108584634 CGCTG-TAATTGAGGTGTATAAATGTTGTTAATTGAAATGTTAAAGTGCTGCAAATTGAAGTGTT
63 -GCTGCAAATTGAAGTGT-TAAATGCTGTAAATTGAAGTGTTAAAGTGCTGCAAATTGAAGTGTT
* *
108584698 TTAATGCTGTAAATTGAAGTG-TTAAACTGCTGCAAATTGAAGTGTTTGAATGCTGTAAATTGAA
126 TGAATGCTGTAAATTGAAGTGTTTAAA-TGCTGCAAATTGAAGTGTTT-AATGCTGCAAATTGAA
* * * * * *
108584762 GTGTTTAAATGCTGTAAATTGAAGTGCTTAAATGTTG
189 GTGTTT-AGTGCTGCAAATTGAA-TGTTTTATTGCTG
* * * * * ** **
108584799 CAAATTGAAGTGTTTAAGTACTGCAAATTGAAGTGTTTAGTTGCTG-GACATTGAGATGTTTTA-
1 -AAATTGAGGTG-TTAAATACTG-TAATTGAGGTGTATAAATGCTGTGA-ATTGAGATGTTAAAG
* * * * * *
108584862 TCGTTG-TAATTGAGGTGTATAAATGTTGTTAATTGAGGTGTTAAAGTGCTGCAAATTGAAGTGT
62 T-GCTGCAAATTGAAGTGT-TAAATGCTGTAAATTGAAGTGTTAAAGTGCTGCAAATTGAAGTGT
* *
108584926 TTTAATGCTGTAAATTGAAGTG-TTAAACTGCTGCAAATTGAAGTGTTTGAATGCTGTAAAATT-
125 TTGAATGCTGTAAATTGAAGTGTTTAAA-TGCTGCAAATTGAAGTGTTT-AATGCTG-CAAATTG
* * * * * * *
108584989 AAATGTTTAAATGCTGTAAATTGAAGTGCTTAAATGTTG
187 AAGTGTTT-AGTGCTGCAAATTGAA-TGTTTTATTGCTG
* * * * * ** **
108585028 CAAATTGAAGTGTTTAAGTACTGCAAATTGAAGTGTTTAGTTGCTG-GACATTGAGATGTTTTA-
1 -AAATTGAGGTG-TTAAATACTG-TAATTGAGGTGTATAAATGCTGTGA-ATTGAGATGTTAAAG
* * * * *
108585091 T-C-GCTATAATTGAGGTGTATAAATGTTGTTAATTGAGGTGTTAAAGTGCTGGAAATTGAAGTG
62 TGCTGC-A-AATTGAAGTGT-TAAATGCTGTAAATTGAAGTGTTAAAGTGCTGCAAATTGAAGTG
* * *
108585154 TTTGACTGCTGTAAATTGAAGTGTTTAAATGCTGTAAATTGAAGTGTTTAAATGTTGCAAATTGA
124 TTTGAATGCTGTAAATTGAAGTGTTTAAATGCTGCAAATTGAAGTGTTT-AATGCTGCAAATTGA
* *
108585219 ATTGTTTAAGTACTGCAAATTGAA-GTGTTTAGTTGCTGG
188 AGTGTTT-AGTGCTGCAAATTGAATGT-TTTA-TTGCT-G
* * ** * *
108585258 ACATTGAGATGTTTTAT-CGTTGTAATTGAGGTGTATAAATGTTGTTAATTGAGATGTTAAAGTG
1 AAATTGAGGTGTTAAATAC--TGTAATTGAGGTGTATAAATGCTGTGAATTGAGATGTTAAAGTG
*
108585322 CTGCAAATTGAAGTGCTTAAATGCTGTAAATTGAAGTGTTAAAGTGCTGCAAATTGAACTGTTTG
64 CTGCAAATTGAAGTG-TTAAATGCTGTAAATTGAAGTGTTAAAGTGCTGCAAATTGAAGTGTTTG
* * * * *
108585387 AATGTTGTAAATTGAAGTGTTTAAATGCTGTAAATTGAAATGCTTAAATGTTGCAAATTGAAGTG
128 AATGCTGTAAATTGAAGTGTTTAAATGCTGCAAATTGAAGTG-TTTAATGCTGCAAATTGAAGTG
*
108585452 TTTAAGTACTGCAAATTGAA-GTGTTTAGTTGCTGG
192 TTT-AGTGCTGCAAATTGAATGT-TTTA-TTGCT-G
* * ** * * *
108585487 ACATTGAGATGTTTTATCCCTGTAATTGAGGTGTATAAATGTTGTTAATTGAGATGTTAAAGTGC
1 AAATTGAGGTGTTAAAT-ACTGTAATTGAGGTGTATAAATGCTGTGAATTGAGATGTTAAAGTGC
*
108585552 TGCAAATTGAAGTGCTTAAATGCTGTAAATTGAAGTGTTAAAGTGCTGCAAATTGAACTGTTTGA
65 TGCAAATTGAAGTG-TTAAATGCTGTAAATTGAAGTGTTAAAGTGCTGCAAATTGAAGTGTTTGA
* * *
108585617 ATGCTGTAAATTGAAGTGTTTAAATGTTGCAAATTGAAGTGCTTAAGTACTGCAAATTGAAGTGT
129 ATGCTGTAAATTGAAGTGTTTAAATGCTGCAAATTGAAGTGTTTAA-TGCTGCAAATTGAAGTGT
* * *
108585682 TTAGTTGCTGGACATTGAGATGTTTTATTACTG
193 TTAG-TGCTGCAAATTGA-ATGTTTTATTGCTG
* * * *
108585715 TAATTGAGGTGTATAAATATTGTTAATTGAGATGT-TAAAGTGCTGTAAATTGA-AGTGTTAAAG
1 AAATTGAGGTGT-TAAATACTG-TAATTGAGGTGTATAAA-TGCTGTGAATTGAGA-TGTTAAAG
* * * * *
108585778 TGCTGCAAATTGAAGTGTTTGAATGCTGCAAATTCAAGTGTTTAAA-TGCTGTAAATTGAAGTGC
62 TGCTGCAAATTGAAGTG-TTAAATGCTGTAAATTGAAGTG-TTAAAGTGCTGCAAATTGAAGTGT
* * *
108585842 TTAAATGTTGCAAATTGAAGTGTTTAA
125 TTGAATGCTGTAAATTGAAGTGTTTAA
108585869 GTACTTATTT
Statistics
Matches: 957, Mismatches: 82, Indels: 60
0.87 0.07 0.05
Matches are distributed among these distances:
226 1 0.00
227 2 0.00
228 62 0.06
229 861 0.90
230 26 0.03
231 5 0.01
ACGTcount: A:0.32, C:0.07, G:0.24, T:0.38
Consensus pattern (223 bp):
AAATTGAGGTGTTAAATACTGTAATTGAGGTGTATAAATGCTGTGAATTGAGATGTTAAAGTGCT
GCAAATTGAAGTGTTAAATGCTGTAAATTGAAGTGTTAAAGTGCTGCAAATTGAAGTGTTTGAAT
GCTGTAAATTGAAGTGTTTAAATGCTGCAAATTGAAGTGTTTAATGCTGCAAATTGAAGTGTTTA
GTGCTGCAAATTGAATGTTTTATTGCTG
Found at i:108589493 original size:25 final size:26
Alignment explanation
Indices: 108589426--108589494 Score: 70
Period size: 25 Copynumber: 2.7 Consensus size: 26
108589416 TTTTATTAGG
108589426 TATTTTAAATTAGATTTTAGAAATTA
1 TATTTTAAATTAGATTTTAGAAATTA
* * * ** *
108589452 TATATT-AATTGGTTTTTAG-GGTTC
1 TATTTTAAATTAGATTTTAGAAATTA
108589476 TATTTTAAATTAGATTTTA
1 TATTTTAAATTAGATTTTA
108589495 AGATTGCTTT
Statistics
Matches: 33, Mismatches: 9, Indels: 3
0.73 0.20 0.07
Matches are distributed among these distances:
24 7 0.21
25 21 0.64
26 5 0.15
ACGTcount: A:0.33, C:0.01, G:0.12, T:0.54
Consensus pattern (26 bp):
TATTTTAAATTAGATTTTAGAAATTA
Found at i:108598546 original size:98 final size:99
Alignment explanation
Indices: 108598426--108598634 Score: 348
Period size: 98 Copynumber: 2.1 Consensus size: 99
108598416 AAATAAACAT
* * * * *
108598426 ATATTAAATATATAATATTACTCTAATGTGAACATTAAAATAATGTTAAGATGATTATATAAAAA
1 ATATTAAATTTTTAATACTACTCTAATGTGAACATTAAAATAATATTAAGATAATTATATAAAAA
108598491 ATTTCAATAAATAAAAAA-ATACAAAAGTATTAA
66 ATTTCAATAAATAAAAAATATACAAAAGTATTAA
108598524 ATATTAAATTTTTAATACTACTCTAATGTGAACATTAAAATAATATTAAGATAATTATATAAAAA
1 ATATTAAATTTTTAATACTACTCTAATGTGAACATTAAAATAATATTAAGATAATTATATAAAAA
*
108598589 ATTTCAATAAATAAAAAATATACAAAATTATTAA
66 ATTTCAATAAATAAAAAATATACAAAAGTATTAA
*
108598623 ATTTTAAATTTT
1 ATATTAAATTTT
108598635 AAAATAATAT
Statistics
Matches: 103, Mismatches: 7, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
98 78 0.76
99 25 0.24
ACGTcount: A:0.54, C:0.05, G:0.04, T:0.37
Consensus pattern (99 bp):
ATATTAAATTTTTAATACTACTCTAATGTGAACATTAAAATAATATTAAGATAATTATATAAAAA
ATTTCAATAAATAAAAAATATACAAAAGTATTAA
Found at i:108609325 original size:3 final size:3
Alignment explanation
Indices: 108609317--108609348 Score: 64
Period size: 3 Copynumber: 10.7 Consensus size: 3
108609307 AGATCCAGGC
108609317 CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CT
1 CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CT
108609349 ATCAAAGGTA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.00, C:0.34, G:0.00, T:0.66
Consensus pattern (3 bp):
CTT
Found at i:108613654 original size:11 final size:10
Alignment explanation
Indices: 108613638--108613676 Score: 51
Period size: 10 Copynumber: 3.7 Consensus size: 10
108613628 TATTCACATA
108613638 TTTCTTTCTT
1 TTTCTTTCTT
*
108613648 CTTTCTTTTTTT
1 -TTTC-TTTCTT
108613660 TTTCTTTCTT
1 TTTCTTTCTT
108613670 TTTCTTT
1 TTTCTTT
108613677 TTTAATTTTA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
10 12 0.48
11 8 0.32
12 5 0.20
ACGTcount: A:0.00, C:0.18, G:0.00, T:0.82
Consensus pattern (10 bp):
TTTCTTTCTT
Found at i:108613663 original size:22 final size:21
Alignment explanation
Indices: 108613638--108613679 Score: 75
Period size: 21 Copynumber: 2.0 Consensus size: 21
108613628 TATTCACATA
108613638 TTTCTTTCTTCTTTCTTTTTTT
1 TTTCTTTCTT-TTTCTTTTTTT
108613660 TTTCTTTCTTTTTCTTTTTT
1 TTTCTTTCTTTTTCTTTTTT
108613680 AATTTTAGCG
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
21 10 0.50
22 10 0.50
ACGTcount: A:0.00, C:0.17, G:0.00, T:0.83
Consensus pattern (21 bp):
TTTCTTTCTTTTTCTTTTTTT
Found at i:108613665 original size:18 final size:19
Alignment explanation
Indices: 108613638--108613679 Score: 57
Period size: 22 Copynumber: 2.1 Consensus size: 19
108613628 TATTCACATA
108613638 TTTCTTTCTTCTTTCTTTTTTT
1 TTTCTTTCTT-TTTC--TTTTT
108613660 TTTCTTTCTTTTTCTTTTT
1 TTTCTTTCTTTTTCTTTTT
108613679 T
1 T
108613680 AATTTTAGCG
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
19 6 0.30
21 4 0.20
22 10 0.50
ACGTcount: A:0.00, C:0.17, G:0.00, T:0.83
Consensus pattern (19 bp):
TTTCTTTCTTTTTCTTTTT
Found at i:108613666 original size:15 final size:16
Alignment explanation
Indices: 108613638--108613678 Score: 66
Period size: 15 Copynumber: 2.6 Consensus size: 16
108613628 TATTCACATA
108613638 TTTCTTTCTTCTTTCTT
1 TTTCTTT-TTCTTTCTT
108613655 TTT-TTTTTCTTTCTT
1 TTTCTTTTTCTTTCTT
108613670 TTTCTTTTT
1 TTTCTTTTT
108613679 TAATTTTAGC
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
15 12 0.52
16 8 0.35
17 3 0.13
ACGTcount: A:0.00, C:0.17, G:0.00, T:0.83
Consensus pattern (16 bp):
TTTCTTTTTCTTTCTT
Found at i:108621242 original size:18 final size:19
Alignment explanation
Indices: 108621198--108621235 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
108621188 GTAAAATTTG
* *
108621198 AAAAAAAATTCAATTTTTT
1 AAAAATAATTAAATTTTTT
108621217 AAAAATAATTAAATTTTTT
1 AAAAATAATTAAATTTTTT
108621236 TAAATAAACC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.53, C:0.03, G:0.00, T:0.45
Consensus pattern (19 bp):
AAAAATAATTAAATTTTTT
Found at i:108627103 original size:4 final size:4
Alignment explanation
Indices: 108627094--108627122 Score: 58
Period size: 4 Copynumber: 7.2 Consensus size: 4
108627084 CCCTTTTCTA
108627094 TTTC TTTC TTTC TTTC TTTC TTTC TTTC T
1 TTTC TTTC TTTC TTTC TTTC TTTC TTTC T
108627123 CACGTTTGCT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 25 1.00
ACGTcount: A:0.00, C:0.24, G:0.00, T:0.76
Consensus pattern (4 bp):
TTTC
Found at i:108630312 original size:31 final size:31
Alignment explanation
Indices: 108630277--108630336 Score: 93
Period size: 31 Copynumber: 1.9 Consensus size: 31
108630267 CAAAATATTG
*
108630277 ATATTACCTTTTAATCGAGTCTCAACTCATA
1 ATATTACCTTTCAATCGAGTCTCAACTCATA
* *
108630308 ATATTATCTTTCAATCGGGTCTCAACTCA
1 ATATTACCTTTCAATCGAGTCTCAACTCA
108630337 ATTAAACAAT
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
31 26 1.00
ACGTcount: A:0.30, C:0.23, G:0.08, T:0.38
Consensus pattern (31 bp):
ATATTACCTTTCAATCGAGTCTCAACTCATA
Found at i:108630707 original size:17 final size:18
Alignment explanation
Indices: 108630682--108630719 Score: 51
Period size: 17 Copynumber: 2.2 Consensus size: 18
108630672 AAAAAATTAT
*
108630682 TTTAGTTATTTA-TTTAA
1 TTTAGTTATATATTTTAA
*
108630699 TTTATTTATATATTTTAA
1 TTTAGTTATATATTTTAA
108630717 TTT
1 TTT
108630720 TTGAATTTAT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
17 10 0.56
18 8 0.44
ACGTcount: A:0.29, C:0.00, G:0.03, T:0.68
Consensus pattern (18 bp):
TTTAGTTATATATTTTAA
Found at i:108630879 original size:21 final size:22
Alignment explanation
Indices: 108630838--108630886 Score: 57
Period size: 21 Copynumber: 2.3 Consensus size: 22
108630828 AATTAAAACG
*
108630838 TTAAAATTAATTTATATA-TTT
1 TTAAAATTAATTTATAAATTTT
*
108630859 TTAAAA-TAATTTTTTAAATTTT
1 TTAAAATTAA-TTTATAAATTTT
108630881 TTAAAA
1 TTAAAA
108630887 GTAAAATTAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
20 3 0.12
21 12 0.50
22 9 0.38
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (22 bp):
TTAAAATTAATTTATAAATTTT
Found at i:108633976 original size:11 final size:10
Alignment explanation
Indices: 108633946--108634067 Score: 71
Period size: 10 Copynumber: 12.2 Consensus size: 10
108633936 GTTGATGTAC
108633946 ATAATTTTTGT
1 ATAATTTTT-T
108633957 A-AATTTTTT
1 ATAATTTTTT
108633966 ATAATTCTTTT
1 ATAATT-TTTT
108633977 -T-ATATTTTT
1 ATAAT-TTTTT
*
108633986 ATAATTTCTT
1 ATAATTTTTT
*
108633996 AT-ACTTTTT
1 ATAATTTTTT
108634005 AT-ATTTTTT
1 ATAATTTTTT
108634014 -TGAATTTTTGT
1 AT-AATTTTT-T
*
108634025 A-AATTTTCAT
1 ATAATTTT-TT
*
108634035 ATAACTATTTT
1 ATAA-TTTTTT
108634046 AT-ATTTTTT
1 ATAATTTTTT
*
108634055 ATAGATATTTT
1 ATA-ATTTTTT
108634066 AT
1 AT
108634068 TATCATAAAT
Statistics
Matches: 88, Mismatches: 9, Indels: 28
0.70 0.07 0.22
Matches are distributed among these distances:
8 1 0.01
9 28 0.32
10 35 0.40
11 21 0.24
12 3 0.03
ACGTcount: A:0.29, C:0.04, G:0.03, T:0.64
Consensus pattern (10 bp):
ATAATTTTTT
Found at i:108633986 original size:8 final size:8
Alignment explanation
Indices: 108633973--108634012 Score: 53
Period size: 8 Copynumber: 4.6 Consensus size: 8
108633963 TTTATAATTC
108633973 TTTTTATA
1 TTTTTATA
108633981 TTTTTATAA
1 TTTTTAT-A
108633990 TTTCTTATA
1 TTT-TTATA
108633999 CTTTTTATA
1 -TTTTTATA
108634008 TTTTT
1 TTTTT
108634013 TTGAATTTTT
Statistics
Matches: 29, Mismatches: 0, Indels: 6
0.83 0.00 0.17
Matches are distributed among these distances:
8 12 0.41
9 10 0.34
10 7 0.24
ACGTcount: A:0.23, C:0.05, G:0.00, T:0.72
Consensus pattern (8 bp):
TTTTTATA
Found at i:108634003 original size:18 final size:20
Alignment explanation
Indices: 108633962--108634003 Score: 52
Period size: 18 Copynumber: 2.2 Consensus size: 20
108633952 TTTGTAAATT
* *
108633962 TTTTATAATTCTTTTTATAT
1 TTTTATAATTCTTCTTATAC
108633982 TTTTATAA-T-TTCTTATAC
1 TTTTATAATTCTTCTTATAC
108634000 TTTT
1 TTTT
108634004 TATATTTTTT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
18 11 0.55
19 1 0.05
20 8 0.40
ACGTcount: A:0.24, C:0.07, G:0.00, T:0.69
Consensus pattern (20 bp):
TTTTATAATTCTTCTTATAC
Found at i:108634010 original size:18 final size:18
Alignment explanation
Indices: 108633961--108634007 Score: 58
Period size: 19 Copynumber: 2.4 Consensus size: 18
108633951 TTTTGTAAAT
*
108633961 TTTTTATAATTCTTTTTATA
1 TTTTTATAA-T-TTCTTATA
108633981 TTTTTATAATTTCTTATA
1 TTTTTATAATTTCTTATA
108633999 CTTTTTATA
1 -TTTTTATA
108634008 TTTTTTTGAA
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
18 7 0.28
19 9 0.36
20 9 0.36
ACGTcount: A:0.26, C:0.06, G:0.00, T:0.68
Consensus pattern (18 bp):
TTTTTATAATTTCTTATA
Found at i:108636641 original size:61 final size:60
Alignment explanation
Indices: 108636527--108636676 Score: 214
Period size: 61 Copynumber: 2.5 Consensus size: 60
108636517 CACCTAACTT
* * * *
108636527 TTAGTGCACTTTCATTTTGGTCACCCAAAATGAATTCTTTGCAATTTTGTCACCCTAGTC
1 TTAGAGCACTTTCATTTTAGTCACCCAAAATGAATTCTTTGCAATTTTCTCACCCTACTC
108636587 TTATG-GCACTTTCATTTTAGTCACACCAAAATGAAATTC-TTGCAATTTTCTCACCCTACTC
1 TTA-GAGCACTTTCATTTTAGTCAC-CCAAAATG-AATTCTTTGCAATTTTCTCACCCTACTC
*
108636648 TTAGAGCGCTTTCATTTTAGTCACCCAAA
1 TTAGAGCACTTTCATTTTAGTCACCCAAA
108636677 CGTTAAATCT
Statistics
Matches: 82, Mismatches: 4, Indels: 8
0.87 0.04 0.09
Matches are distributed among these distances:
60 27 0.33
61 50 0.61
62 5 0.06
ACGTcount: A:0.26, C:0.25, G:0.11, T:0.38
Consensus pattern (60 bp):
TTAGAGCACTTTCATTTTAGTCACCCAAAATGAATTCTTTGCAATTTTCTCACCCTACTC
Found at i:108639866 original size:20 final size:21
Alignment explanation
Indices: 108639843--108639886 Score: 65
Period size: 20 Copynumber: 2.2 Consensus size: 21
108639833 ATATTTTCAT
108639843 ATATTTTATAT-TATTCAAAA
1 ATATTTTATATATATTCAAAA
*
108639863 ATA-TTTATATATATTTAAAA
1 ATATTTTATATATATTCAAAA
108639883 ATAT
1 ATAT
108639887 AATTATATTC
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
19 7 0.33
20 14 0.67
ACGTcount: A:0.48, C:0.02, G:0.00, T:0.50
Consensus pattern (21 bp):
ATATTTTATATATATTCAAAA
Found at i:108639893 original size:20 final size:19
Alignment explanation
Indices: 108639843--108639894 Score: 50
Period size: 20 Copynumber: 2.6 Consensus size: 19
108639833 ATATTTTCAT
*
108639843 ATATTTTATATTATTCAAAA
1 ATATATTATA-TATTCAAAA
* *
108639863 ATATTTATATATATTTAAAA
1 ATATAT-TATATATTCAAAA
108639883 ATATAATTATAT
1 ATAT-ATTATAT
108639895 TCATATTGAA
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
20 23 0.82
21 5 0.18
ACGTcount: A:0.48, C:0.02, G:0.00, T:0.50
Consensus pattern (19 bp):
ATATATTATATATTCAAAA
Found at i:108639956 original size:17 final size:18
Alignment explanation
Indices: 108639921--108639957 Score: 51
Period size: 17 Copynumber: 2.2 Consensus size: 18
108639911 ATACTATTCA
*
108639921 TTCTTATTATCATTATTT
1 TTCTTATTATAATTATTT
108639939 TTCTT-TTATAATT-TTT
1 TTCTTATTATAATTATTT
108639955 TTC
1 TTC
108639958 AACTTACTAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
16 6 0.33
17 7 0.39
18 5 0.28
ACGTcount: A:0.19, C:0.11, G:0.00, T:0.70
Consensus pattern (18 bp):
TTCTTATTATAATTATTT
Found at i:108647212 original size:63 final size:63
Alignment explanation
Indices: 108647107--108647286 Score: 184
Period size: 63 Copynumber: 2.9 Consensus size: 63
108647097 AAATATACCT
* * * * * * * *
108647107 GCAGAATGTGTTGATACAGGGTATGATAGTGTATAGTATGGTGCTTATGTAAAAATAAAAG-G
1 GCAGAAGGTGTTGATGCAAGGTAAGATGGTGCAGAGTGTGGTGCTTATGTAAAAATAAAAGAG
* * **
108647169 TGCGGAAGGTGTTGATGCAAGTTACAG-TGGTGCATTGTGTGGTGCTTATGTAAAAATAAAAGAG
1 -GCAGAAGGTGTTGATGCAAGGTA-AGATGGTGCAGAGTGTGGTGCTTATGTAAAAATAAAAGAG
* * * *
108647233 GCAGAATGTGTTGATGCAGGGTATGATGGTGCAGAGTGTGGTGCTTGTGTAAAA
1 GCAGAAGGTGTTGATGCAAGGTAAGATGGTGCAGAGTGTGGTGCTTATGTAAAA
108647287 TTAACGAGGT
Statistics
Matches: 96, Mismatches: 18, Indels: 6
0.80 0.15 0.05
Matches are distributed among these distances:
62 1 0.01
63 93 0.97
64 2 0.02
ACGTcount: A:0.30, C:0.07, G:0.33, T:0.30
Consensus pattern (63 bp):
GCAGAAGGTGTTGATGCAAGGTAAGATGGTGCAGAGTGTGGTGCTTATGTAAAAATAAAAGAG
Found at i:108650833 original size:30 final size:29
Alignment explanation
Indices: 108650792--108650856 Score: 85
Period size: 29 Copynumber: 2.2 Consensus size: 29
108650782 CTTTAAAAAC
*
108650792 TAAAAACTAAAAAATTACCAAAATTATTTT
1 TAAAAACT-AAAAATCACCAAAATTATTTT
* **
108650822 TAAAAATTAAAAATCATTAAAATTATTTT
1 TAAAAACTAAAAATCACCAAAATTATTTT
108650851 TAAAAA
1 TAAAAA
108650857 AATATAAAAA
Statistics
Matches: 31, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
29 24 0.77
30 7 0.23
ACGTcount: A:0.58, C:0.06, G:0.00, T:0.35
Consensus pattern (29 bp):
TAAAAACTAAAAATCACCAAAATTATTTT
Found at i:108650856 original size:23 final size:23
Alignment explanation
Indices: 108650830--108650877 Score: 69
Period size: 23 Copynumber: 2.0 Consensus size: 23
108650820 TTTAAAAATT
* *
108650830 AAAAATCATTAAAATTATTTTTAA
1 AAAAAT-ATAAAAAATATTTTTAA
108650854 AAAAATATAAAAAATATTTTTAA
1 AAAAATATAAAAAATATTTTTAA
108650877 A
1 A
108650878 TTTCAAAAAT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
23 16 0.73
24 6 0.27
ACGTcount: A:0.60, C:0.02, G:0.00, T:0.38
Consensus pattern (23 bp):
AAAAATATAAAAAATATTTTTAA
Found at i:108651752 original size:43 final size:44
Alignment explanation
Indices: 108651697--108651780 Score: 143
Period size: 43 Copynumber: 1.9 Consensus size: 44
108651687 TTAGTTTAAA
* *
108651697 AAGTTGTGATAATTAAACATTT-AAAATAATTATAATTTAATAG
1 AAGTAGTGATAATTAAACATTTAAAAATAATTAGAATTTAATAG
108651740 AAGTAGTGATAATTAAACATTTAAAAATAATTAGAATTTAA
1 AAGTAGTGATAATTAAACATTTAAAAATAATTAGAATTTAA
108651781 GTTAGAATTA
Statistics
Matches: 38, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
43 21 0.55
44 17 0.45
ACGTcount: A:0.51, C:0.02, G:0.10, T:0.37
Consensus pattern (44 bp):
AAGTAGTGATAATTAAACATTTAAAAATAATTAGAATTTAATAG
Found at i:108651799 original size:43 final size:42
Alignment explanation
Indices: 108651677--108651780 Score: 126
Period size: 43 Copynumber: 2.5 Consensus size: 42
108651667 AATAATTAAT
* *
108651677 TTTAAAATTATTAG--TTTAA-A-AAGTTGTGATAATTAAACA
1 TTTAAAATAATTAGAATTTAATAGAAGTAGT-ATAATTAAACA
*
108651716 TTTAAAATAATTATAATTTAATAGAAGTAGTGATAATTAAACA
1 TTTAAAATAATTAGAATTTAATAGAAGTAGT-ATAATTAAACA
108651759 TTTAAAAATAATTAGAATTTAA
1 TTT-AAAATAATTAGAATTTAA
108651781 GTTAGAATTA
Statistics
Matches: 56, Mismatches: 4, Indels: 5
0.86 0.06 0.08
Matches are distributed among these distances:
39 12 0.21
41 5 0.09
42 1 0.02
43 21 0.38
44 17 0.30
ACGTcount: A:0.50, C:0.02, G:0.09, T:0.39
Consensus pattern (42 bp):
TTTAAAATAATTAGAATTTAATAGAAGTAGTATAATTAAACA
Found at i:108652416 original size:21 final size:23
Alignment explanation
Indices: 108652381--108652425 Score: 58
Period size: 21 Copynumber: 2.0 Consensus size: 23
108652371 AGAACTTGTG
108652381 ATAATTGTATATTTAAAATAATT
1 ATAATTGTATATTTAAAATAATT
* *
108652404 ATAATT-T-TATTTACAATTATT
1 ATAATTGTATATTTAAAATAATT
108652425 A
1 A
108652426 CTTAAAAAAG
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
21 13 0.65
22 1 0.05
23 6 0.30
ACGTcount: A:0.44, C:0.02, G:0.02, T:0.51
Consensus pattern (23 bp):
ATAATTGTATATTTAAAATAATT
Found at i:108662998 original size:14 final size:14
Alignment explanation
Indices: 108662976--108663005 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
108662966 AATTGAACTT
108662976 TAAAATAAATAATA
1 TAAAATAAATAATA
*
108662990 TAAAGTAAATAATA
1 TAAAATAAATAATA
108663004 TA
1 TA
108663006 CAAAATAATA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.67, C:0.00, G:0.03, T:0.30
Consensus pattern (14 bp):
TAAAATAAATAATA
Found at i:108663610 original size:26 final size:26
Alignment explanation
Indices: 108663579--108663630 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
108663569 ATGCGCGAAC
108663579 TTCCAAACCCCATGCTGCTTTACTTT
1 TTCCAAACCCCATGCTGCTTTACTTT
*
108663605 TTCCAAACCCCATGCTGTTTTACTTT
1 TTCCAAACCCCATGCTGCTTTACTTT
108663631 ATTATTTAAA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.19, C:0.33, G:0.08, T:0.40
Consensus pattern (26 bp):
TTCCAAACCCCATGCTGCTTTACTTT
Done.