Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A06
Parameters: 2 7 7 80 10 50 1000
Length:  115140250

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   

This is table  323  of  345  ( 41358 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
108664520--108665117
177
3.4
177
83
2
752
30
21
19
29
1.97
108665008--108665204
44
4.5
45
66
20
121
32
22
18
26
1.97
108664954--108665249
132
2.2
132
95
0
520
32
21
18
27
1.97
108668505--108668565
16
3.9
15
80
20
63
27
0
3
68
1.05
108678206--108678231
11
2.4
11
100
0
52
92
0
7
0
0.39
108678845--108678892
16
3.1
15
80
19
62
27
0
2
70
0.98
108688288--108688593
154
2.0
154
91
0
495
37
21
14
26
1.91
108693291--108693460
61
2.9
59
79
14
190
42
1
2
52
1.23
108693617--108693688
16
4.6
16
85
1
101
27
25
5
41
1.77
108702662--108702730
27
2.6
27
95
2
122
36
42
7
14
1.73
108703877--108703908
3
10.3
3
93
6
55
31
3
0
65
1.08
108704157--108704233
22
3.3
23
76
12
68
31
7
6
54
1.54
108704157--108704205
23
2.0
25
84
11
66
32
8
4
55
1.48
108704441--108704475
18
1.9
18
94
0
61
37
5
2
54
1.39
108716701--108717203
46
11.6
44
72
14
210
31
20
21
26
1.98
108716704--108717031
44
7.5
46
74
12
182
31
21
21
25
1.98
108716871--108717210
87
3.9
86
71
8
267
30
20
22
27
1.98
108716744--108717213
218
2.2
214
85
4
624
31
20
22
26
1.98
108716746--108717236
44
11.4
43
71
12
231
31
19
21
26
1.97
108717542--108717606
27
2.4
27
92
2
105
38
41
6
13
1.70
108718756--108718787
3
10.3
3
93
6
55
31
3
0
65
1.08
108719036--108719112
22
3.3
23
76
12
68
31
7
6
54
1.54
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
108719036--108719084
23
2.0
25
84
11
66
32
8
4
55
1.48
108719320--108719357
20
1.9
20
94
0
67
39
5
2
52
1.38
108723165--108723199
14
2.4
14
95
4
61
8
25
0
65
1.21
108723145--108723189
19
2.5
18
83
16
58
6
26
0
66
1.16
108723831--108723923
41
2.2
41
98
1
177
24
2
33
39
1.67
108723931--108723977
19
2.4
19
92
3
76
29
6
21
42
1.77
108725748--108725779
16
1.9
17
93
6
57
53
0
0
46
1.00
108725772--108725984
61
3.4
63
69
17
194
41
2
6
49
1.41
108725734--108726026
120
2.4
120
92
2
482
42
2
5
50
1.36
108725855--108725889
18
2.0
17
88
5
52
40
0
0
60
0.97
108725975--108726009
18
2.0
17
88
5
52
45
0
0
54
0.99
108725963--108726237
147
1.9
149
96
1
509
47
2
3
46
1.33
108726122--108726156
18
2.0
17
88
5
52
45
0
0
54
0.99
108726393--108726428
16
2.2
16
95
0
63
38
33
0
27
1.57
108726839--108726874
18
2.0
18
88
0
54
50
0
0
50
1.00
108729982--108730042
31
2.0
31
83
6
79
49
8
8
34
1.62
108730547--108730677
60
2.2
60
82
5
149
44
12
15
28
1.82
108731902--108731954
16
3.4
15
75
17
54
33
0
0
66
0.92
108741228--108741312
43
2.0
43
92
0
143
28
7
16
48
1.72
108745655--108745694
21
1.9
21
89
0
62
20
10
7
62
1.50
108745747--108745771
2
12.5
2
100
0
50
48
0
0
52
1.00
108752236--108752267
13
2.5
13
94
0
55
31
0
12
56
1.37
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
108752362--108752603
50
4.7
50
86
4
297
26
24
29
19
1.99
108752362--108752611
100
2.4
103
88
6
364
26
24
29
20
1.99
108772901--108772930
6
5.0
6
100
0
60
16
0
50
33
1.46
108773142--108773173
15
2.0
17
88
11
50
68
28
0
3
1.04
108775439--108775484
20
2.3
20
85
3
58
17
21
0
60
1.35
108777462--108777486
12
2.1
12
100
0
50
40
32
28
0
1.57
108783585--108783631
24
2.0
24
87
8
69
46
0
34
19
1.50
108783992--108784025
17
2.1
16
88
5
50
58
0
0
41
0.98
108784028--108784076
17
3.0
17
73
11
57
51
8
2
38
1.43
108784797--108784837
16
2.6
16
84
0
64
41
0
0
58
0.98
108784781--108784831
25
2.0
26
92
7
86
37
0
0
62
0.95
108784781--108784828
8
5.6
9
79
16
57
35
0
0
64
0.94
108787316--108787357
22
1.9
22
90
0
66
50
7
0
42
1.30
108787796--108787837
19
2.2
19
86
0
57
59
2
11
26
1.45
108787802--108787839
19
2.0
19
94
0
67
50
5
13
31
1.63
108787894--108787948
12
4.9
12
70
17
55
45
16
1
36
1.58
108787884--108787964
32
2.5
32
93
2
135
43
14
3
38
1.64
108788058--108788086
5
5.8
5
100
0
58
41
0
17
41
1.49
108791983--108792420
48
9.2
48
84
7
477
27
15
26
31
1.95
108792330--108792438
42
2.6
41
91
1
164
31
13
24
30
1.94
108799030--108799418
132
3.0
129
75
6
370
25
19
19
34
1.96
108801259--108801383
46
2.5
50
82
10
150
28
17
27
27
1.98
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
108802132--108802192
20
3.0
20
92
0
104
19
36
29
14
1.92
108808603--108808705
53
2.0
52
86
1
143
28
15
22
33
1.94
108808621--108808730
53
2.2
50
81
10
129
29
16
22
31
1.96
108809491--108809551
20
3.0
20
92
0
104
21
37
27
13
1.90
108819033--108819122
44
2.0
44
100
0
180
51
8
8
31
1.64
108819033--108819135
44
2.4
44
90
4
129
51
8
9
30
1.65
108822148--108822590
131
3.4
132
80
7
474
34
18
18
28
1.95
108827506--108827550
21
2.2
21
84
4
56
28
4
22
44
1.72
108830315--108830343
14
2.1
14
100
0
58
34
0
0
65
0.93
108830313--108830368
3
19.0
3
78
10
62
32
5
1
60
1.29
108830402--108830450
24
2.1
23
82
14
57
38
8
2
51
1.43
108841817--108841843
1
27.0
1
100
0
54
100
0
0
0
0.00
108843044--108843839
44
18.6
44
70
13
338
31
20
22
26
1.98
108843085--108843368
124
2.3
124
97
0
532
32
19
20
27
1.97
108843210--108843762
169
3.2
169
92
2
869
30
19
22
26
1.98
108843295--108843835
87
6.3
87
71
10
389
30
21
22
26
1.99
108843044--108843839
41
18.6
44
69
16
310
31
20
22
26
1.98
108843553--108843803
130
1.9
128
79
7
276
28
20
24
26
1.99
108843550--108843960
217
1.9
217
84
2
556
29
21
23
26
1.99
108845136--108845189
3
18.0
3
81
7
65
31
5
1
61
1.30
108845223--108845271
24
2.1
23
82
14
57
38
8
2
51
1.43
108849277--108849321
22
2.0
22
91
0
72
48
15
2
33
1.57
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
108852515--108852559
22
2.0
22
91
0
72
48
15
2
33
1.57
108871168--108871220
24
2.3
24
83
6
65
56
1
1
39
1.21
108871942--108872505
127
4.5
125
82
4
630
36
20
16
26
1.93
108874508--108875099
45
13.3
44
71
19
376
26
21
19
31
1.97
108874486--108875219
134
5.5
133
91
4
1074
26
22
19
31
1.98
108874510--108875028
89
5.8
87
70
19
317
26
22
19
32
1.97
108874486--108875143
89
7.4
88
70
19
290
27
21
19
31
1.98
108875298--108875421
64
1.9
64
87
6
180
35
17
18
28
1.94
108879331--108879362
16
2.0
16
93
0
55
37
28
18
15
1.92
108886612--108887111
127
4.0
125
78
5
502
38
19
15
26
1.92
108897131--108897296
81
2.0
81
95
0
296
29
23
17
29
1.97
108900568--108900658
40
2.2
40
84
5
112
32
28
16
21
1.95
108900585--108900680
40
2.4
40
83
1
111
38
28
14
18
1.90
108902361--108902399
17
2.3
17
86
8
53
35
5
2
56
1.35
108903595--108903623
13
2.3
13
94
5
51
24
13
20
41
1.89
108904267--108904300
17
1.9
18
94
5
61
58
5
8
26
1.51
108905018--108905067
10
5.0
10
81
13
59
68
2
8
22
1.26
108907107--108907165
31
1.9
31
89
0
82
38
11
5
44
1.63
108908856--108908896
22
1.9
21
85
14
57
63
2
9
24
1.37
108909658--108909716
10
6.0
10
81
15
70
67
1
8
22
1.26
108910386--108910568
96
1.9
97
91
1
305
29
26
16
27
1.97
108911297--108911354
20
3.1
18
75
20
57
79
3
3
13
0.99
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
108918331--108918390
10
6.0
10
84
11
79
68
1
8
21
1.25
108918934--108918973
20
2.0
20
85
5
53
52
0
0
47
1.00
108933924--108933952
3
9.7
3
100
0
58
34
31
0
34
1.58
108940575--108940637
31
2.0
32
87
3
92
60
11
4
23
1.49
108951128--108951168
21
1.9
22
85
5
57
34
4
21
39
1.75
108952283--108952556
46
6.0
46
89
0
388
22
21
13
41
1.88
108954667--108954703
3
13.3
3
83
16
53
72
0
0
27
0.84
108954662--108954703
11
3.7
11
96
3
75
73
0
0
26
0.83
108954930--108954988
30
1.9
31
86
3
84
30
18
1
49
1.58
108968182--108968262
41
2.0
41
97
0
153
48
1
17
33
1.55

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345