Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A06
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 115140250
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2234201 characters in sequence are not A, C, G, or T
File 324 of 345
Found at i:108968888 original size:41 final size:41
Alignment explanation
Indices: 108968842--108968924 Score: 166
Period size: 41 Copynumber: 2.0 Consensus size: 41
108968832 AGATACTACA
108968842 AAGTAATTAGATGAAAGTGTAATTATTAGTATAGAAATTAC
1 AAGTAATTAGATGAAAGTGTAATTATTAGTATAGAAATTAC
108968883 AAGTAATTAGATGAAAGTGTAATTATTAGTATAGAAATTAC
1 AAGTAATTAGATGAAAGTGTAATTATTAGTATAGAAATTAC
108968924 A
1 A
108968925 CATTTTTATT
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 42 1.00
ACGTcount: A:0.47, C:0.02, G:0.17, T:0.34
Consensus pattern (41 bp):
AAGTAATTAGATGAAAGTGTAATTATTAGTATAGAAATTAC
Found at i:108971605 original size:26 final size:26
Alignment explanation
Indices: 108971572--108971675 Score: 181
Period size: 26 Copynumber: 4.0 Consensus size: 26
108971562 ATTCTCATCT
*
108971572 TGGAACATTTACCTAAACCATTATCA
1 TGGAACATTTACCTAACCCATTATCA
108971598 TGGAACATTTACCTAACCCATTATCA
1 TGGAACATTTACCTAACCCATTATCA
* *
108971624 TGGAATATTTACCTAATCCATTATCA
1 TGGAACATTTACCTAACCCATTATCA
108971650 TGGAACATTTACCTAACCCATTATCA
1 TGGAACATTTACCTAACCCATTATCA
108971676 ATTTGTACCA
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 73 1.00
ACGTcount: A:0.36, C:0.24, G:0.08, T:0.33
Consensus pattern (26 bp):
TGGAACATTTACCTAACCCATTATCA
Found at i:108976453 original size:41 final size:41
Alignment explanation
Indices: 108976403--108976481 Score: 131
Period size: 41 Copynumber: 1.9 Consensus size: 41
108976393 ACTACAAAGC
*
108976403 AATTGGATGAAAGTGTAATTATTAGTATAGAAATTACAAGT
1 AATTAGATGAAAGTGTAATTATTAGTATAGAAATTACAAGT
* *
108976444 AATTAGATGAAAGTGTAATTGTTAGTTTAGAAATTACA
1 AATTAGATGAAAGTGTAATTATTAGTATAGAAATTACA
108976482 CTTTTTTTAT
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
41 35 1.00
ACGTcount: A:0.43, C:0.03, G:0.19, T:0.35
Consensus pattern (41 bp):
AATTAGATGAAAGTGTAATTATTAGTATAGAAATTACAAGT
Found at i:108980043 original size:20 final size:20
Alignment explanation
Indices: 108980014--108980066 Score: 67
Period size: 20 Copynumber: 2.8 Consensus size: 20
108980004 TTAATTCTCT
108980014 CATA-ATTATTAT-TTTTATA
1 CATATATTATTATATTTT-TA
*
108980033 TATATATTATTATATTTTTA
1 CATATATTATTATATTTTTA
108980053 CATATATTA-TATAT
1 CATATATTATTATAT
108980067 ACATATTATT
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
19 8 0.27
20 18 0.60
21 4 0.13
ACGTcount: A:0.38, C:0.04, G:0.00, T:0.58
Consensus pattern (20 bp):
CATATATTATTATATTTTTA
Found at i:108980243 original size:20 final size:19
Alignment explanation
Indices: 108980218--108980260 Score: 61
Period size: 20 Copynumber: 2.2 Consensus size: 19
108980208 ACATATTACC
108980218 AATTATAT-TATTTATGTTTA
1 AATTATATATA-TTAT-TTTA
108980238 AATTATATATATTATTTTA
1 AATTATATATATTATTTTA
108980257 AATT
1 AATT
108980261 TGTAAATTGT
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
19 8 0.36
20 12 0.55
21 2 0.09
ACGTcount: A:0.40, C:0.00, G:0.02, T:0.58
Consensus pattern (19 bp):
AATTATATATATTATTTTA
Found at i:108980691 original size:30 final size:30
Alignment explanation
Indices: 108980657--108980715 Score: 82
Period size: 30 Copynumber: 2.0 Consensus size: 30
108980647 ATTCTATTTG
* * *
108980657 TATATCATACATTATTTGATTATTGTTTTT
1 TATATCATACATCATTTAATTATTATTTTT
*
108980687 TATATCATGCATCATTTAATTATTATTTT
1 TATATCATACATCATTTAATTATTATTTT
108980716 ATATGTTTGT
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.29, C:0.08, G:0.05, T:0.58
Consensus pattern (30 bp):
TATATCATACATCATTTAATTATTATTTTT
Found at i:108984253 original size:15 final size:15
Alignment explanation
Indices: 108984219--108984263 Score: 51
Period size: 15 Copynumber: 3.1 Consensus size: 15
108984209 ATATTCTTTA
108984219 TGCAT-TCATGCATT
1 TGCATCTCATGCATT
108984233 TGCATCTCATGGCATT
1 TGCATCTCAT-GCATT
*
108984249 T-CATCACAT-CATT
1 TGCATCTCATGCATT
108984262 TG
1 TG
108984264 TATTCAAAGT
Statistics
Matches: 27, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
13 5 0.19
14 5 0.19
15 11 0.41
16 6 0.22
ACGTcount: A:0.22, C:0.24, G:0.13, T:0.40
Consensus pattern (15 bp):
TGCATCTCATGCATT
Found at i:108992563 original size:122 final size:120
Alignment explanation
Indices: 108992249--108992850 Score: 922
Period size: 119 Copynumber: 5.0 Consensus size: 120
108992239 AGGCCGCAGT
* * * *
108992249 ATGGCAGATCTAGCTTTCAGATGTTTATACTGAAACAGATCCAAGGTGATTTGGTATTCTTGTGT
1 ATGGCAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGTATTCTTGTGT
* * * *
108992314 TTATAAGAAACAAATCGAGGACATAGCAGATTTGACTCTCAGACGTTCTCA-AAT
66 TTACAAGGAACAAATCGAGGACATAGCAGATTTGACTCTCAGATGTTCTCAGAAC
* * * *
108992368 ATAGCAAATCTAAACTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGTATTCTTGTAT
1 ATGGCAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGTATTCTTGTGT
* *
108992433 TTACAAGGAACAAATCGAGGATATAGTAGATTTGACTCTCAGATGTTCTCAGACAC
66 TTACAAGGAACAAATCGAGGACATAGCAGATTTGACTCTCAGATGTTCTCAGA-AC
**
108992489 ATGGCAGATCTAACCTTCAGATGTTTATACTGAAGCCAGATCCAAGATGATTTGACATTCTTGTG
1 ATGGCAGATCTAACCTTCAGATGTTTATACTGAAG-CAGATCCAAGATGATTTGGTATTCTTGTG
*
108992554 TTTACAAGGAACAAATCGAGGACATAGCAGATTTGACTCTCAGATGTTCTCAG-AT
65 TTTACAAGGAACAAATCGAGGACATAGCAGATTTGACTCTCAGATGTTCTCAGAAC
* * *
108992609 ATAGCAGATCTAAGCTTCAGATGTTTATATTGAAGCAGATCCAAGATGATTTGGTATTCTTGTGT
1 ATGGCAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGTATTCTTGTGT
* *
108992674 TTACGAGGAACAAATCGAGGATATAGCAGATTTGACTCTCAGATGTTCTCAGACAC
66 TTACAAGGAACAAATCGAGGACATAGCAGATTTGACTCTCAGATGTTCTCAGA-AC
**
108992730 ATGGCAGATCTAACCTTCAGATGTTTATACTGAAGCCAGATCCAAGATGATTTGACATTCTTGTG
1 ATGGCAGATCTAACCTTCAGATGTTTATACTGAAG-CAGATCCAAGATGATTTGGTATTCTTGTG
*
108992795 TTTACAAGAAACAAATCGAGGACATAGCAGATTTGACTCTCAGATGTTCTCA-AAC
65 TTTACAAGGAACAAATCGAGGACATAGCAGATTTGACTCTCAGATGTTCTCAGAAC
108992850 A
1 A
108992851 GACTCAAGAT
Statistics
Matches: 438, Mismatches: 39, Indels: 11
0.90 0.08 0.02
Matches are distributed among these distances:
119 181 0.41
120 37 0.08
121 67 0.15
122 153 0.35
ACGTcount: A:0.33, C:0.17, G:0.20, T:0.31
Consensus pattern (120 bp):
ATGGCAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGTATTCTTGTGT
TTACAAGGAACAAATCGAGGACATAGCAGATTTGACTCTCAGATGTTCTCAGAAC
Found at i:108992671 original size:241 final size:241
Alignment explanation
Indices: 108992249--108992848 Score: 1049
Period size: 241 Copynumber: 2.5 Consensus size: 241
108992239 AGGCCGCAGT
* * * * **
108992249 ATGGCAGATCTAGCTTTCAGATGTTTATACTGAA-ACAGATCCAAGGTGATTTGGTATTCTTGTG
1 ATGGCAGATCTAACCTTCAGATGTTTATACTGAAGCCAGATCCAAGATGATTTGACATTCTTGTG
* *
108992313 TTTATAAGAAACAAATCGAGGACATAGCAGATTTGACTCTCAGACGTTCTCAAATATAGCAAATC
66 TTTACAAGAAACAAATCGAGGACATAGCAGATTTGACTCTCAGATGTTCTCAAATATAGCAAATC
108992378 TAAACTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGTATTCTTGTATTTACAAGGAA
131 TAAACTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGTATTCTTGTATTTACAAGGAA
*
108992443 CAAATCGAGGATATAGTAGATTTGACTCTCAGATGTTCTCAGACAC
196 CAAATCGAGGATATAGCAGATTTGACTCTCAGATGTTCTCAGACAC
108992489 ATGGCAGATCTAACCTTCAGATGTTTATACTGAAGCCAGATCCAAGATGATTTGACATTCTTGTG
1 ATGGCAGATCTAACCTTCAGATGTTTATACTGAAGCCAGATCCAAGATGATTTGACATTCTTGTG
* * *
108992554 TTTACAAGGAACAAATCGAGGACATAGCAGATTTGACTCTCAGATGTTCTCAGATATAGCAGATC
66 TTTACAAGAAACAAATCGAGGACATAGCAGATTTGACTCTCAGATGTTCTCAAATATAGCAAATC
* * * *
108992619 TAAGCTTCAGATGTTTATATTGAAGCAGATCCAAGATGATTTGGTATTCTTGTGTTTACGAGGAA
131 TAAACTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGTATTCTTGTATTTACAAGGAA
108992684 CAAATCGAGGATATAGCAGATTTGACTCTCAGATGTTCTCAGACAC
196 CAAATCGAGGATATAGCAGATTTGACTCTCAGATGTTCTCAGACAC
108992730 ATGGCAGATCTAACCTTCAGATGTTTATACTGAAGCCAGATCCAAGATGATTTGACATTCTTGTG
1 ATGGCAGATCTAACCTTCAGATGTTTATACTGAAGCCAGATCCAAGATGATTTGACATTCTTGTG
108992795 TTTACAAGAAACAAATCGAGGACATAGCAGATTTGACTCTCAGATGTTCTCAAA
66 TTTACAAGAAACAAATCGAGGACATAGCAGATTTGACTCTCAGATGTTCTCAAA
108992849 CAGACTCAAG
Statistics
Matches: 341, Mismatches: 18, Indels: 1
0.95 0.05 0.00
Matches are distributed among these distances:
240 32 0.09
241 309 0.91
ACGTcount: A:0.33, C:0.17, G:0.20, T:0.31
Consensus pattern (241 bp):
ATGGCAGATCTAACCTTCAGATGTTTATACTGAAGCCAGATCCAAGATGATTTGACATTCTTGTG
TTTACAAGAAACAAATCGAGGACATAGCAGATTTGACTCTCAGATGTTCTCAAATATAGCAAATC
TAAACTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGTATTCTTGTATTTACAAGGAA
CAAATCGAGGATATAGCAGATTTGACTCTCAGATGTTCTCAGACAC
Found at i:108994664 original size:28 final size:28
Alignment explanation
Indices: 108994633--108994702 Score: 69
Period size: 26 Copynumber: 2.6 Consensus size: 28
108994623 CTCTCATAAT
*
108994633 TATTATTTTATATATATATATATTATT-A
1 TATTATTTTATAAATATATATA-TATTCA
*
108994661 TA-T-TTTTACAAATAT-TATATATTCA
1 TATTATTTTATAAATATATATATATTCA
*
108994686 TATTATTTT-TACATATA
1 TATTATTTTATAAATATA
108994703 AATTTTCATT
Statistics
Matches: 34, Mismatches: 4, Indels: 9
0.72 0.09 0.19
Matches are distributed among these distances:
24 4 0.12
25 7 0.21
26 16 0.47
27 5 0.15
28 2 0.06
ACGTcount: A:0.39, C:0.04, G:0.00, T:0.57
Consensus pattern (28 bp):
TATTATTTTATAAATATATATATATTCA
Found at i:108994855 original size:20 final size:19
Alignment explanation
Indices: 108994830--108994872 Score: 61
Period size: 20 Copynumber: 2.2 Consensus size: 19
108994820 ACATATTACC
108994830 AATTATAT-TATTTATGTTTA
1 AATTATATATA-TTAT-TTTA
108994850 AATTATATATATTATTTTA
1 AATTATATATATTATTTTA
108994869 AATT
1 AATT
108994873 TGTAAATTGT
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
19 8 0.36
20 12 0.55
21 2 0.09
ACGTcount: A:0.40, C:0.00, G:0.02, T:0.58
Consensus pattern (19 bp):
AATTATATATATTATTTTA
Found at i:108995297 original size:30 final size:30
Alignment explanation
Indices: 108995263--108995321 Score: 82
Period size: 30 Copynumber: 2.0 Consensus size: 30
108995253 CTTCTATATG
* * *
108995263 TATATCATACATTATTTGATTATTGTTTTT
1 TATATCATACATCATTTAATTATTATTTTT
*
108995293 TATATCATGCATCATTTAATTATTATTTT
1 TATATCATACATCATTTAATTATTATTTT
108995322 ATATGTTTGT
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.29, C:0.08, G:0.05, T:0.58
Consensus pattern (30 bp):
TATATCATACATCATTTAATTATTATTTTT
Found at i:108998593 original size:41 final size:41
Alignment explanation
Indices: 108998547--108998626 Score: 151
Period size: 41 Copynumber: 2.0 Consensus size: 41
108998537 AGATACTACA
108998547 AAGTAATTAGATGAAAGTGTAATTATTAGTATAGAAATTAC
1 AAGTAATTAGATGAAAGTGTAATTATTAGTATAGAAATTAC
*
108998588 AAGTAATTAGATGAAAGTGTAATTATTATTATAGAAATT
1 AAGTAATTAGATGAAAGTGTAATTATTAGTATAGAAATT
108998627 GCACTTTTTT
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
41 38 1.00
ACGTcount: A:0.46, C:0.01, G:0.16, T:0.36
Consensus pattern (41 bp):
AAGTAATTAGATGAAAGTGTAATTATTAGTATAGAAATTAC
Found at i:109010212 original size:30 final size:31
Alignment explanation
Indices: 109010178--109010235 Score: 91
Period size: 30 Copynumber: 1.9 Consensus size: 31
109010168 CTATTTATTG
*
109010178 ATTATGTTATTTCTTTAGT-TTTATTATTTT
1 ATTATATTATTTCTTTAGTGTTTATTATTTT
*
109010208 ATTATATTATTTCTTTATTGTTTATTAT
1 ATTATATTATTTCTTTAGTGTTTATTAT
109010236 CATGATTATC
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
30 17 0.68
31 8 0.32
ACGTcount: A:0.22, C:0.03, G:0.05, T:0.69
Consensus pattern (31 bp):
ATTATATTATTTCTTTAGTGTTTATTATTTT
Found at i:109012118 original size:18 final size:18
Alignment explanation
Indices: 109012091--109012141 Score: 50
Period size: 18 Copynumber: 2.8 Consensus size: 18
109012081 AGACAAAAAG
*
109012091 AAATACAAAAATAAAAATA
1 AAATA-AAAAATAAAAACA
109012110 AAATAAAAAGA-AAAAACA
1 AAATAAAAA-ATAAAAACA
* *
109012128 TATTAAAAAATAAA
1 AAATAAAAAATAAA
109012142 TGGACTTAAA
Statistics
Matches: 27, Mismatches: 3, Indels: 5
0.77 0.09 0.14
Matches are distributed among these distances:
17 1 0.04
18 20 0.74
19 6 0.22
ACGTcount: A:0.78, C:0.04, G:0.02, T:0.16
Consensus pattern (18 bp):
AAATAAAAAATAAAAACA
Found at i:109025103 original size:13 final size:13
Alignment explanation
Indices: 109025085--109025113 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
109025075 CACCGGTGGC
109025085 TGCATCGATCAAT
1 TGCATCGATCAAT
109025098 TGCATCGATCAAT
1 TGCATCGATCAAT
109025111 TGC
1 TGC
109025114 TTAGTCAAGG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.28, C:0.24, G:0.17, T:0.31
Consensus pattern (13 bp):
TGCATCGATCAAT
Found at i:109026195 original size:16 final size:16
Alignment explanation
Indices: 109026174--109026205 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
109026164 ATGAACGCAA
109026174 CATAGGTTTCATCTTC
1 CATAGGTTTCATCTTC
109026190 CATAGGTTTCATCTTC
1 CATAGGTTTCATCTTC
109026206 AATTTACTGG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.19, C:0.25, G:0.12, T:0.44
Consensus pattern (16 bp):
CATAGGTTTCATCTTC
Found at i:109039987 original size:8 final size:8
Alignment explanation
Indices: 109039974--109040019 Score: 65
Period size: 8 Copynumber: 5.5 Consensus size: 8
109039964 ACTTAAGTAT
109039974 ATAATATA
1 ATAATATA
109039982 ATAATATA
1 ATAATATA
109039990 ATAATATATA
1 AT-A-ATATA
*
109040000 ATAATTTA
1 ATAATATA
109040008 ATAATATA
1 ATAATATA
109040016 ATAA
1 ATAA
109040020 AACATAAAGA
Statistics
Matches: 34, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
8 25 0.74
9 2 0.06
10 7 0.21
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (8 bp):
ATAATATA
Found at i:109040000 original size:18 final size:18
Alignment explanation
Indices: 109039977--109040015 Score: 69
Period size: 18 Copynumber: 2.2 Consensus size: 18
109039967 TAAGTATATA
109039977 ATATAATAATATAATAAT
1 ATATAATAATATAATAAT
*
109039995 ATATAATAATTTAATAAT
1 ATATAATAATATAATAAT
109040013 ATA
1 ATA
109040016 ATAAAACATA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (18 bp):
ATATAATAATATAATAAT
Found at i:109040026 original size:26 final size:26
Alignment explanation
Indices: 109039974--109040026 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
109039964 ACTTAAGTAT
* *
109039974 ATAATATAATAATATAATAATATATA
1 ATAATATAATAATATAATAAAACATA
*
109040000 ATAATTTAATAATATAATAAAACATA
1 ATAATATAATAATATAATAAAACATA
109040026 A
1 A
109040027 AGAAAAAAAA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.62, C:0.02, G:0.00, T:0.36
Consensus pattern (26 bp):
ATAATATAATAATATAATAAAACATA
Found at i:109049084 original size:23 final size:23
Alignment explanation
Indices: 109049049--109049111 Score: 66
Period size: 22 Copynumber: 3.0 Consensus size: 23
109049039 TTTATTATAA
*
109049049 AAAATA-TACTTATATTATTACT
1 AAAATACTATTTATATTATTACT
109049071 AAAATACTATTTATA-TATTTA-T
1 AAAATACTATTTATATTA-TTACT
109049093 AAAA-ACT-TTTAT-TTATTAC
1 AAAATACTATTTATATTATTAC
109049112 ACATTGTTTA
Statistics
Matches: 36, Mismatches: 1, Indels: 10
0.77 0.02 0.21
Matches are distributed among these distances:
19 3 0.08
20 7 0.19
21 3 0.08
22 13 0.36
23 10 0.28
ACGTcount: A:0.44, C:0.08, G:0.00, T:0.48
Consensus pattern (23 bp):
AAAATACTATTTATATTATTACT
Found at i:109049109 original size:20 final size:20
Alignment explanation
Indices: 109049034--109049110 Score: 75
Period size: 23 Copynumber: 3.6 Consensus size: 20
109049024 TCTTTATATA
*
109049034 ATTTATTTATTATAAAAAAT
1 ATTTATTTATTATAAAAACT
109049054 ATACTTATATTATTACTAAAATACT
1 AT--TTAT-TTATTA-TAAAA-ACT
*
109049079 ATTTATATATTTATAAAAACT
1 ATTTATTTA-TTATAAAAACT
109049100 -TTTATTTATTA
1 ATTTATTTATTA
109049111 CACATTGTTT
Statistics
Matches: 48, Mismatches: 3, Indels: 13
0.75 0.05 0.20
Matches are distributed among these distances:
19 3 0.06
20 9 0.19
21 3 0.06
22 11 0.23
23 13 0.27
24 5 0.10
25 4 0.08
ACGTcount: A:0.44, C:0.05, G:0.00, T:0.51
Consensus pattern (20 bp):
ATTTATTTATTATAAAAACT
Found at i:109049167 original size:29 final size:27
Alignment explanation
Indices: 109049135--109049211 Score: 77
Period size: 25 Copynumber: 2.8 Consensus size: 27
109049125 ATACGTATAT
109049135 TTATATTTTATTTTATTATATAACATTTA
1 TTATATTTTATTTTATTATATAAC--TTA
* *
109049164 TTATGTTTTA-TTT-TTATATTACTTA
1 TTATATTTTATTTTATTATATAACTTA
* *
109049189 TTATTTTTTATATATATTATATA
1 TTATATTTTAT-TTTATTATATA
109049212 TCACATATTA
Statistics
Matches: 40, Mismatches: 5, Indels: 7
0.77 0.10 0.13
Matches are distributed among these distances:
25 12 0.30
27 10 0.25
28 9 0.22
29 9 0.22
ACGTcount: A:0.31, C:0.03, G:0.01, T:0.65
Consensus pattern (27 bp):
TTATATTTTATTTTATTATATAACTTA
Found at i:109049346 original size:14 final size:15
Alignment explanation
Indices: 109049316--109049352 Score: 51
Period size: 14 Copynumber: 2.5 Consensus size: 15
109049306 TTATATACAC
109049316 ATTTCATTATTATTT
1 ATTTCATTATTATTT
109049331 ATTT-ATTA-TATATT
1 ATTTCATTATTAT-TT
109049345 ATTTCATT
1 ATTTCATT
109049353 TTAAATTAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
13 3 0.15
14 10 0.50
15 7 0.35
ACGTcount: A:0.30, C:0.05, G:0.00, T:0.65
Consensus pattern (15 bp):
ATTTCATTATTATTT
Found at i:109049782 original size:16 final size:17
Alignment explanation
Indices: 109049761--109049794 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 17
109049751 CATTTTTTTG
*
109049761 CTTTATAT-GTATTATT
1 CTTTATATCGTAGTATT
109049777 CTTTATATCGTAGTATT
1 CTTTATATCGTAGTATT
109049794 C
1 C
109049795 ATTTTTTATT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 8 0.50
17 8 0.50
ACGTcount: A:0.24, C:0.12, G:0.09, T:0.56
Consensus pattern (17 bp):
CTTTATATCGTAGTATT
Found at i:109061404 original size:119 final size:119
Alignment explanation
Indices: 109061193--109061427 Score: 382
Period size: 119 Copynumber: 2.0 Consensus size: 119
109061183 AATTGAAGAC
*
109061193 AGCAGATCTAGACTTCAGACATTTATGCTGAAGCAGATCCAAGATGATTTGGTATTCTTGTGTTT
1 AGCAGATCTAGACTTCAGACATTTATACTGAAGCAGATCCAAGATGATTTGGTATTCTTGTGTTT
* *
109061258 ACAAGAAACAAATCGAGGACATAGCAGATTTGACTCTCAGACGTTCTCAAATAT
66 ACAAGAAACAAATCGAGGACATAGCAGATATGACTCTCAAACGTTCTCAAATAT
**
109061312 AGCAGATCTA-ACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGTATTCTTGTGTT
1 AGCAGATCTAGA-CTTCAGACATTTATACTGAAGCAGATCCAAGATGATTTGGTATTCTTGTGTT
* * *
109061376 TACAAGGAACAAATCGAGGACATTGCAGATATGACTCTCAAATGTTCTCAAA
65 TACAAGAAACAAATCGAGGACATAGCAGATATGACTCTCAAACGTTCTCAAA
109061428 CAAACTCAAG
Statistics
Matches: 107, Mismatches: 8, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
118 1 0.01
119 106 0.99
ACGTcount: A:0.34, C:0.17, G:0.19, T:0.30
Consensus pattern (119 bp):
AGCAGATCTAGACTTCAGACATTTATACTGAAGCAGATCCAAGATGATTTGGTATTCTTGTGTTT
ACAAGAAACAAATCGAGGACATAGCAGATATGACTCTCAAACGTTCTCAAATAT
Found at i:109061462 original size:83 final size:83
Alignment explanation
Indices: 109061351--109061508 Score: 210
Period size: 83 Copynumber: 1.9 Consensus size: 83
109061341 GAAGCAGATC
* * * * *
109061351 CAAGATGATTTGGTATTCTTGTGTTTACAA-GGAACAAATCGAGGACATTGCAGATATGACTCTC
1 CAAGATGATTTGGCATCCTTGTGCTTACAAGGGAA-AAATCGAGGACATAGAAGATATGACTCTC
*
109061415 AAATGTTCTCAAACAAACT
65 AAACGTTCTCAAACAAACT
* * *
109061434 CAAGATGGTTTGGCATCCTTGTGCTTACAAGGGAAAAATCGAGGACATAGAAGATTTGATTCTCA
1 CAAGATGATTTGGCATCCTTGTGCTTACAAGGGAAAAATCGAGGACATAGAAGATATGACTCTCA
*
109061499 GACGTTCTCA
66 AACGTTCTCA
109061509 GATATAGCAG
Statistics
Matches: 64, Mismatches: 10, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
83 60 0.94
84 4 0.06
ACGTcount: A:0.33, C:0.17, G:0.21, T:0.29
Consensus pattern (83 bp):
CAAGATGATTTGGCATCCTTGTGCTTACAAGGGAAAAATCGAGGACATAGAAGATATGACTCTCA
AACGTTCTCAAACAAACT
Found at i:109061578 original size:202 final size:201
Alignment explanation
Indices: 109061232--109061714 Score: 761
Period size: 202 Copynumber: 2.4 Consensus size: 201
109061222 GAAGCAGATC
* * * * * *
109061232 CAAGATGATTTGGTATTCTTGTGTTTACAAGAAACAAATCGAGGACATAGCAGATTTGACTCTCA
1 CAAGATGGTTTGGCATCCTTGTGTTTACAAGGAACAAATCGAGGACATAGAAGATTTGATTCTCA
109061297 GACGTTCTCAAATATAGCAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTT
66 GACGTTCTCAAATATAGCAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTT
* * *
109061362 GGTATTCTTGTGTTTACAAGGAACAAATCGAGGACATTGCAGATATGACTCTCAAATGTTCTCAA
131 GGTATTCTTGTGTTTACAAGGAACAAATCGAGGACATAGCAGATATGACTATCAAAAGTTCTCAA
109061427 ACAAACT
196 ACAAA-T
*
109061434 CAAGATGGTTTGGCATCCTTGTGCTTACAAGGGAA-AAATCGAGGACATAGAAGATTTGATTCTC
1 CAAGATGGTTTGGCATCCTTGTGTTTACAA-GGAACAAATCGAGGACATAGAAGATTTGATTCTC
*
109061498 AGACGTTCTCAGATATAGCAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATT
65 AGACGTTCTCAAATATAGCAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATT
109061563 TGGTATTCTTGTGTTTACAAGGAACAAATCGAGGACATAGCAGATATGACTATCAAAAGTTCTCA
130 TGGTATTCTTGTGTTTACAAGGAACAAATCGAGGACATAGCAGATATGACTATCAAAAGTTCTCA
* *
109061628 AATAGAT
195 AACAAAT
* * *
109061635 CAAAGACGGTTTGGCATCCTTGTGTTTACAAGGAACAAATCGAGGACATAGTAGATATGATTCTC
1 C-AAGATGGTTTGGCATCCTTGTGTTTACAAGGAACAAATCGAGGACATAGAAGATTTGATTCTC
* * *
109061700 AAAAGTTCTAAAATA
65 AGACGTTCTCAAATA
109061715 GATCAAGATG
Statistics
Matches: 257, Mismatches: 21, Indels: 6
0.90 0.07 0.02
Matches are distributed among these distances:
201 6 0.02
202 248 0.96
203 3 0.01
ACGTcount: A:0.35, C:0.16, G:0.20, T:0.29
Consensus pattern (201 bp):
CAAGATGGTTTGGCATCCTTGTGTTTACAAGGAACAAATCGAGGACATAGAAGATTTGATTCTCA
GACGTTCTCAAATATAGCAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTT
GGTATTCTTGTGTTTACAAGGAACAAATCGAGGACATAGCAGATATGACTATCAAAAGTTCTCAA
ACAAAT
Found at i:109061663 original size:83 final size:82
Alignment explanation
Indices: 109061548--109061734 Score: 275
Period size: 83 Copynumber: 2.3 Consensus size: 82
109061538 ATACTGAAGC
* * *
109061548 AGATCCAAGATGATTTGGTATTCTTGTGTTTACAAGGAACAAATCGAGGACATAGCAGATATGAC
1 AGAT-CAAGACGATTTGGCATCCTTGTGTTTACAAGGAACAAATCGAGGACATAGCAGATATGAC
*
109061613 TATCAAAAGTTCTCAAAT
65 TATCAAAAGTTCTAAAAT
* * *
109061631 AGATCAAAGACGGTTTGGCATCCTTGTGTTTACAAGGAACAAATCGAGGACATAGTAGATATGAT
1 AGATC-AAGACGATTTGGCATCCTTGTGTTTACAAGGAACAAATCGAGGACATAGCAGATATGAC
*
109061696 TCTCAAAAGTTCTAAAAT
65 TATCAAAAGTTCTAAAAT
*
109061714 AGATCAAGATGATTTGGCATC
1 AGATCAAGACGATTTGGCATC
109061735 TCTACAAATC
Statistics
Matches: 93, Mismatches: 10, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
82 15 0.16
83 78 0.84
ACGTcount: A:0.37, C:0.14, G:0.20, T:0.28
Consensus pattern (82 bp):
AGATCAAGACGATTTGGCATCCTTGTGTTTACAAGGAACAAATCGAGGACATAGCAGATATGACT
ATCAAAAGTTCTAAAAT
Found at i:109063351 original size:23 final size:23
Alignment explanation
Indices: 109063316--109063378 Score: 66
Period size: 22 Copynumber: 3.0 Consensus size: 23
109063306 TTTATTATAA
*
109063316 AAAATA-TACTTATATTATTACT
1 AAAATACTATTTATATTATTACT
109063338 AAAATACTATTTATA-TATTTA-T
1 AAAATACTATTTATATTA-TTACT
109063360 AAAA-ACT-TTTAT-TTATTAC
1 AAAATACTATTTATATTATTAC
109063379 ACATTGTTTA
Statistics
Matches: 36, Mismatches: 1, Indels: 10
0.77 0.02 0.21
Matches are distributed among these distances:
19 3 0.08
20 7 0.19
21 3 0.08
22 13 0.36
23 10 0.28
ACGTcount: A:0.44, C:0.08, G:0.00, T:0.48
Consensus pattern (23 bp):
AAAATACTATTTATATTATTACT
Found at i:109063376 original size:20 final size:20
Alignment explanation
Indices: 109063301--109063377 Score: 75
Period size: 23 Copynumber: 3.6 Consensus size: 20
109063291 TCTTTATATA
*
109063301 ATTTATTTATTATAAAAAAT
1 ATTTATTTATTATAAAAACT
109063321 ATACTTATATTATTACTAAAATACT
1 AT--TTAT-TTATTA-TAAAA-ACT
*
109063346 ATTTATATATTTATAAAAACT
1 ATTTATTTA-TTATAAAAACT
109063367 -TTTATTTATTA
1 ATTTATTTATTA
109063378 CACATTGTTT
Statistics
Matches: 48, Mismatches: 3, Indels: 13
0.75 0.05 0.20
Matches are distributed among these distances:
19 3 0.06
20 9 0.19
21 3 0.06
22 11 0.23
23 13 0.27
24 5 0.10
25 4 0.08
ACGTcount: A:0.44, C:0.05, G:0.00, T:0.51
Consensus pattern (20 bp):
ATTTATTTATTATAAAAACT
Found at i:109063621 original size:19 final size:20
Alignment explanation
Indices: 109063576--109063621 Score: 62
Period size: 19 Copynumber: 2.5 Consensus size: 20
109063566 TTATATACAC
*
109063576 ATTTCA-TTATTATTTATTT
1 ATTTCATTTATTATATATTT
109063595 ATTT-ATTTATTATATA-TT
1 ATTTCATTTATTATATATTT
109063613 ATTTCATTT
1 ATTTCATTT
109063622 TAAATTAATA
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
18 7 0.29
19 17 0.71
ACGTcount: A:0.28, C:0.04, G:0.00, T:0.67
Consensus pattern (20 bp):
ATTTCATTTATTATATATTT
Found at i:109064053 original size:16 final size:17
Alignment explanation
Indices: 109064032--109064065 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 17
109064022 ATTTTTTTTG
*
109064032 CTTTATAT-GTATTATT
1 CTTTATATCGTAGTATT
109064048 CTTTATATCGTAGTATT
1 CTTTATATCGTAGTATT
109064065 C
1 C
109064066 ATTTTTTATT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 8 0.50
17 8 0.50
ACGTcount: A:0.24, C:0.12, G:0.09, T:0.56
Consensus pattern (17 bp):
CTTTATATCGTAGTATT
Found at i:109069051 original size:3 final size:3
Alignment explanation
Indices: 109069037--109069069 Score: 57
Period size: 3 Copynumber: 10.7 Consensus size: 3
109069027 AGTTATTTAC
109069037 TTA TTGA TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TT-A TTA TTA TTA TTA TTA TTA TTA TTA TT
109069070 TTTTTCTTCT
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
3 26 0.90
4 3 0.10
ACGTcount: A:0.30, C:0.00, G:0.03, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:109071903 original size:14 final size:14
Alignment explanation
Indices: 109071866--109071904 Score: 60
Period size: 14 Copynumber: 2.8 Consensus size: 14
109071856 AAAATGGTTT
* *
109071866 ATGCAAATGGATGT
1 ATGCAAATGTATGA
109071880 ATGCAAATGTATGA
1 ATGCAAATGTATGA
109071894 ATGCAAATGTA
1 ATGCAAATGTA
109071905 CCAACTCAGA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
14 23 1.00
ACGTcount: A:0.41, C:0.08, G:0.23, T:0.28
Consensus pattern (14 bp):
ATGCAAATGTATGA
Found at i:109072969 original size:5 final size:6
Alignment explanation
Indices: 109072941--109072974 Score: 59
Period size: 6 Copynumber: 5.5 Consensus size: 6
109072931 GAAAACCCAA
109072941 AAAAAT AAAGAAT AAAAAT AAAAAT AAAAAT AAA
1 AAAAAT AAA-AAT AAAAAT AAAAAT AAAAAT AAA
109072975 TGAAAAAGTA
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
6 21 0.78
7 6 0.22
ACGTcount: A:0.82, C:0.00, G:0.03, T:0.15
Consensus pattern (6 bp):
AAAAAT
Found at i:109083999 original size:28 final size:28
Alignment explanation
Indices: 109083959--109084048 Score: 162
Period size: 28 Copynumber: 3.2 Consensus size: 28
109083949 ATGTACTAGA
109083959 ATACCCCTATGTATGCAAAATTACCATT
1 ATACCCCTATGTATGCAAAATTACCATT
109083987 ATACCCCTATGTATGCAAAATTACCATT
1 ATACCCCTATGTATGCAAAATTACCATT
* *
109084015 ATACCCCTATGTATGCAAAATGACCTTT
1 ATACCCCTATGTATGCAAAATTACCATT
109084043 ATACCC
1 ATACCC
109084049 TTAGGGTTAA
Statistics
Matches: 60, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
28 60 1.00
ACGTcount: A:0.34, C:0.27, G:0.08, T:0.31
Consensus pattern (28 bp):
ATACCCCTATGTATGCAAAATTACCATT
Found at i:109084215 original size:27 final size:27
Alignment explanation
Indices: 109084157--109084246 Score: 119
Period size: 28 Copynumber: 3.2 Consensus size: 27
109084147 AGGAAGCGTC
109084157 CTGGTGGCTA-TGCCACAAATTATCTGTT
1 CTGGTGGC-ACTGCCACAAA-TATCTGTT
* *
109084185 CTGGTGGCCCTGCCACATATATCTGTT
1 CTGGTGGCACTGCCACAAATATCTGTT
109084212 CTGGTGGCACTGCCACAAAATATCTGTAT
1 CTGGTGGCACTGCCAC-AAATATCTGT-T
109084241 CTGGTG
1 CTGGTG
109084247 ACTCTGTCAC
Statistics
Matches: 55, Mismatches: 4, Indels: 5
0.86 0.06 0.08
Matches are distributed among these distances:
27 23 0.42
28 25 0.45
29 7 0.13
ACGTcount: A:0.20, C:0.24, G:0.23, T:0.32
Consensus pattern (27 bp):
CTGGTGGCACTGCCACAAATATCTGTT
Found at i:109084265 original size:55 final size:56
Alignment explanation
Indices: 109084157--109084271 Score: 146
Period size: 55 Copynumber: 2.1 Consensus size: 56
109084147 AGGAAGCGTC
* *
109084157 CTGGTGGCTATGCCACAAATTATCTGTTCTGGTGGCCCTGCCACATATATCTGT-T
1 CTGGTGGCTATGCCACAAAATATCTGTTCTGGTGACCCTGCCACATATATCTGTAT
* * *
109084212 CTGGTGGC-ACTGCCACAAAATATCTGTATCTGGTGACTCTGTCACAT-TTTCTGTAT
1 CTGGTGGCTA-TGCCACAAAATATCTGT-TCTGGTGACCCTGCCACATATATCTGTAT
109084268 CTGG
1 CTGG
109084272 CAGCCATGCT
Statistics
Matches: 52, Mismatches: 5, Indels: 5
0.84 0.08 0.08
Matches are distributed among these distances:
54 1 0.02
55 30 0.58
56 21 0.40
ACGTcount: A:0.19, C:0.24, G:0.22, T:0.35
Consensus pattern (56 bp):
CTGGTGGCTATGCCACAAAATATCTGTTCTGGTGACCCTGCCACATATATCTGTAT
Found at i:109091905 original size:28 final size:28
Alignment explanation
Indices: 109091865--109091957 Score: 168
Period size: 28 Copynumber: 3.3 Consensus size: 28
109091855 ATGTACTAAA
109091865 ATACCCCTATGTATGCAAAATTACCATT
1 ATACCCCTATGTATGCAAAATTACCATT
109091893 ATACCCCTATGTATGCAAAATTACCATT
1 ATACCCCTATGTATGCAAAATTACCATT
* *
109091921 ATACCCCTATGTATGCAAAATGACCTTT
1 ATACCCCTATGTATGCAAAATTACCATT
109091949 ATACCCCTA
1 ATACCCCTA
109091958 GGGTTAATTT
Statistics
Matches: 63, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
28 63 1.00
ACGTcount: A:0.34, C:0.27, G:0.08, T:0.31
Consensus pattern (28 bp):
ATACCCCTATGTATGCAAAATTACCATT
Found at i:109092121 original size:27 final size:27
Alignment explanation
Indices: 109092063--109092152 Score: 119
Period size: 28 Copynumber: 3.2 Consensus size: 27
109092053 AGGAAGCGTC
109092063 CTGGTGGCTA-TGCCACAAATTATCTGTT
1 CTGGTGGC-ACTGCCACAAA-TATCTGTT
* *
109092091 CTGGTGGCCCTGCCACATATATCTGTT
1 CTGGTGGCACTGCCACAAATATCTGTT
109092118 CTGGTGGCACTGCCACAAAATATCTGTAT
1 CTGGTGGCACTGCCAC-AAATATCTGT-T
109092147 CTGGTG
1 CTGGTG
109092153 ACTCTGTCAC
Statistics
Matches: 55, Mismatches: 4, Indels: 5
0.86 0.06 0.08
Matches are distributed among these distances:
27 23 0.42
28 25 0.45
29 7 0.13
ACGTcount: A:0.20, C:0.24, G:0.23, T:0.32
Consensus pattern (27 bp):
CTGGTGGCACTGCCACAAATATCTGTT
Found at i:109092171 original size:55 final size:56
Alignment explanation
Indices: 109092063--109092177 Score: 146
Period size: 55 Copynumber: 2.1 Consensus size: 56
109092053 AGGAAGCGTC
* *
109092063 CTGGTGGCTATGCCACAAATTATCTGTTCTGGTGGCCCTGCCACATATATCTGT-T
1 CTGGTGGCTATGCCACAAAATATCTGTTCTGGTGACCCTGCCACATATATCTGTAT
* * *
109092118 CTGGTGGC-ACTGCCACAAAATATCTGTATCTGGTGACTCTGTCACAT-TTTCTGTAT
1 CTGGTGGCTA-TGCCACAAAATATCTGT-TCTGGTGACCCTGCCACATATATCTGTAT
109092174 CTGG
1 CTGG
109092178 CAGCCATGCT
Statistics
Matches: 52, Mismatches: 5, Indels: 5
0.84 0.08 0.08
Matches are distributed among these distances:
54 1 0.02
55 30 0.58
56 21 0.40
ACGTcount: A:0.19, C:0.24, G:0.22, T:0.35
Consensus pattern (56 bp):
CTGGTGGCTATGCCACAAAATATCTGTTCTGGTGACCCTGCCACATATATCTGTAT
Found at i:109099198 original size:6 final size:6
Alignment explanation
Indices: 109099187--109099256 Score: 56
Period size: 6 Copynumber: 11.7 Consensus size: 6
109099177 TACTTTAGCG
* * * *
109099187 ATTTTT ATTTTT A-TTGT A-TTTT ATTTTT GTTTTT AGTTTA ATTTTT
1 ATTTTT ATTTTT ATTTTT ATTTTT ATTTTT ATTTTT ATTTTT ATTTTT
109099233 ATTTTCT AAATTTTT A-TTTT ATTT
1 ATTTT-T --ATTTTT ATTTTT ATTT
109099257 GCTTCTAGCA
Statistics
Matches: 51, Mismatches: 8, Indels: 10
0.74 0.12 0.14
Matches are distributed among these distances:
5 13 0.25
6 31 0.61
7 1 0.02
8 1 0.02
9 5 0.10
ACGTcount: A:0.20, C:0.01, G:0.04, T:0.74
Consensus pattern (6 bp):
ATTTTT
Found at i:109100998 original size:43 final size:42
Alignment explanation
Indices: 109100841--109100998 Score: 140
Period size: 43 Copynumber: 3.7 Consensus size: 42
109100831 AGCGCGTACA
* * *
109100841 ATGCCAACGTCCCAGACGTGGTCTTACATGTAACCAAATATCG
1 ATGCCAACGTCCCAAACGTGGTCTTACACGTAATCAAAT-TCG
* ** *
109100884 ATGCC-ACTGTCCCAGACAG-GGTCTTACACAAAATCAAATACG
1 ATGCCAAC-GTCCCAAAC-GTGGTCTTACACGTAATCAAATTCG
*** * **
109100926 ATGTTGATGTCCCAAAAATGGTCTTACACGTAATCATAATTCG
1 ATGCCAACGTCCCAAACGTGGTCTTACACGTAATCA-AATTCG
*
109100969 ATGCCAACGTGCCAAACGTGGTCTTACACG
1 ATGCCAACGTCCCAAACGTGGTCTTACACG
109100999 AGAACACATA
Statistics
Matches: 89, Mismatches: 21, Indels: 10
0.74 0.17 0.08
Matches are distributed among these distances:
42 29 0.33
43 59 0.66
44 1 0.01
ACGTcount: A:0.32, C:0.26, G:0.18, T:0.24
Consensus pattern (42 bp):
ATGCCAACGTCCCAAACGTGGTCTTACACGTAATCAAATTCG
Found at i:109106022 original size:20 final size:20
Alignment explanation
Indices: 109105999--109106037 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
109105989 TTATTTACTT
109105999 ATTATATTAATTCTTATTTG
1 ATTATATTAATTCTTATTTG
* * *
109106019 ATTATGTTGATTTTTATTT
1 ATTATATTAATTCTTATTT
109106038 TTTTGTAGAT
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.26, C:0.03, G:0.08, T:0.64
Consensus pattern (20 bp):
ATTATATTAATTCTTATTTG
Found at i:109107358 original size:6 final size:6
Alignment explanation
Indices: 109107339--109107394 Score: 62
Period size: 6 Copynumber: 9.3 Consensus size: 6
109107329 ATTAAGTCCA
* *
109107339 TTTA-T TTTATT TTTAGT TTTAGT TTTAGT TTTAGT TTT-GT TTCTATT
1 TTTAGT TTTAGT TTTAGT TTTAGT TTTAGT TTTAGT TTTAGT TT-TAGT
109107386 TTTATGT TT
1 TTTA-GT TT
109107395 ATTGTTATTT
Statistics
Matches: 44, Mismatches: 3, Indels: 6
0.83 0.06 0.11
Matches are distributed among these distances:
5 8 0.18
6 30 0.68
7 6 0.14
ACGTcount: A:0.14, C:0.02, G:0.11, T:0.73
Consensus pattern (6 bp):
TTTAGT
Found at i:109107370 original size:18 final size:18
Alignment explanation
Indices: 109107339--109107394 Score: 71
Period size: 18 Copynumber: 3.1 Consensus size: 18
109107329 ATTAAGTCCA
109107339 TTTA-TTTTATTTTTAGT
1 TTTAGTTTTATTTTTAGT
*
109107356 TTTAGTTTTAGTTTTAGT
1 TTTAGTTTTATTTTTAGT
109107374 TTT-GTTTCTATTTTTATGT
1 TTTAGTTT-TATTTTTA-GT
109107393 TT
1 TT
109107395 ATTGTTATTT
Statistics
Matches: 34, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
17 8 0.24
18 22 0.65
19 4 0.12
ACGTcount: A:0.14, C:0.02, G:0.11, T:0.73
Consensus pattern (18 bp):
TTTAGTTTTATTTTTAGT
Found at i:109109296 original size:26 final size:26
Alignment explanation
Indices: 109109267--109109374 Score: 171
Period size: 26 Copynumber: 4.2 Consensus size: 26
109109257 TGGTACAAAT
*
109109267 TGATAATGGGTTAGGAAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* * *
109109293 TGATAATAGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
109109319 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
109109345 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
109109371 TGAT
1 TGAT
109109375 GGGCATTTCA
Statistics
Matches: 74, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 74 1.00
ACGTcount: A:0.34, C:0.07, G:0.23, T:0.35
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:109111280 original size:32 final size:34
Alignment explanation
Indices: 109111219--109111283 Score: 89
Period size: 32 Copynumber: 2.0 Consensus size: 34
109111209 CTATGGGCCA
*
109111219 TATTGTTATCTGAATAAAGGGCTAAGGCCCAGTT
1 TATTGTAATCTGAATAAAGGGCTAAGGCCCAGTT
**
109111253 TATTGTAATCTG-A-AAAGGGCTCTGGCCCAGT
1 TATTGTAATCTGAATAAAGGGCTAAGGCCCAGT
109111284 ACCACTGTTA
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
32 16 0.57
33 1 0.04
34 11 0.39
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.31
Consensus pattern (34 bp):
TATTGTAATCTGAATAAAGGGCTAAGGCCCAGTT
Found at i:109117058 original size:30 final size:30
Alignment explanation
Indices: 109117023--109117080 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 30
109117013 CACGTCCATG
*
109117023 ACACACGAGCGTGTGGCCTACCCGTGTGTC
1 ACACACGAGCGTGTGGACTACCCGTGTGTC
* *
109117053 ACACACGGGCGTGTGGATTACCCGTGTG
1 ACACACGAGCGTGTGGACTACCCGTGTG
109117081 GAAGTGCCTA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.17, C:0.29, G:0.33, T:0.21
Consensus pattern (30 bp):
ACACACGAGCGTGTGGACTACCCGTGTGTC
Found at i:109119601 original size:15 final size:15
Alignment explanation
Indices: 109119581--109119610 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
109119571 TGTATCAGTG
*
109119581 ATGAATCATAGCACA
1 ATGAATCAGAGCACA
109119596 ATGAATCAGAGCACA
1 ATGAATCAGAGCACA
109119611 CGGAACCGTC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.47, C:0.20, G:0.17, T:0.17
Consensus pattern (15 bp):
ATGAATCAGAGCACA
Found at i:109120822 original size:24 final size:25
Alignment explanation
Indices: 109120789--109120856 Score: 66
Period size: 26 Copynumber: 2.7 Consensus size: 25
109120779 AGCCATAAAG
109120789 AATTACTAAAAATATAATG-CTAAT
1 AATTACTAAAAATATAATGACTAAT
* * *
109120813 CATTAGTAAAGAAATAAAATGACTAAT
1 AATTACT-AA-AAATATAATGACTAAT
* *
109120840 AATTATTAAAAAAATAA
1 AATTACTAAAAATATAA
109120857 GGAATTAAAT
Statistics
Matches: 34, Mismatches: 7, Indels: 5
0.74 0.15 0.11
Matches are distributed among these distances:
24 5 0.15
25 8 0.24
26 11 0.32
27 10 0.29
ACGTcount: A:0.59, C:0.06, G:0.06, T:0.29
Consensus pattern (25 bp):
AATTACTAAAAATATAATGACTAAT
Found at i:109120844 original size:27 final size:26
Alignment explanation
Indices: 109120796--109120856 Score: 77
Period size: 27 Copynumber: 2.3 Consensus size: 26
109120786 AAGAATTACT
* *
109120796 AAAAATATAATGCTAATCATTAGTAA
1 AAAAATAAAATGCTAATAATTAGTAA
* *
109120822 AGAAATAAAATGACTAATAATTATTAA
1 AAAAATAAAATG-CTAATAATTAGTAA
109120849 AAAAATAA
1 AAAAATAA
109120857 GGAATTAAAT
Statistics
Matches: 29, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
26 10 0.34
27 19 0.66
ACGTcount: A:0.61, C:0.05, G:0.07, T:0.28
Consensus pattern (26 bp):
AAAAATAAAATGCTAATAATTAGTAA
Found at i:109120865 original size:16 final size:16
Alignment explanation
Indices: 109120844--109120884 Score: 55
Period size: 16 Copynumber: 2.5 Consensus size: 16
109120834 ACTAATAATT
109120844 ATTAAAAAAATAAGGA
1 ATTAAAAAAATAAGGA
* *
109120860 ATTAAATAACTAAGGA
1 ATTAAAAAAATAAGGA
109120876 ATTATAAAA
1 ATTA-AAAA
109120885 TAAAAAATAA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
16 18 0.86
17 3 0.14
ACGTcount: A:0.63, C:0.02, G:0.10, T:0.24
Consensus pattern (16 bp):
ATTAAAAAAATAAGGA
Found at i:109120887 original size:19 final size:19
Alignment explanation
Indices: 109120826--109120887 Score: 53
Period size: 19 Copynumber: 3.5 Consensus size: 19
109120816 TAGTAAAGAA
* *
109120826 ATAAAATGACTAA-TAATT
1 ATAAAATAACTAAGGAATT
*
109120844 ATTAAAA-AAATAAGGAA-T
1 A-TAAAATAACTAAGGAATT
109120862 -T-AAATAACTAAGGAATT
1 ATAAAATAACTAAGGAATT
109120879 ATAAAATAA
1 ATAAAATAA
109120888 AAAATAAATG
Statistics
Matches: 34, Mismatches: 4, Indels: 11
0.69 0.08 0.22
Matches are distributed among these distances:
15 3 0.09
16 10 0.29
17 1 0.03
18 7 0.21
19 13 0.38
ACGTcount: A:0.61, C:0.03, G:0.08, T:0.27
Consensus pattern (19 bp):
ATAAAATAACTAAGGAATT
Found at i:109121001 original size:18 final size:17
Alignment explanation
Indices: 109120974--109121008 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
109120964 CTGACGGCGT
*
109120974 TAAGGGTGGTGGTTGGAG
1 TAAGGATGGTGG-TGGAG
109120992 TAAGGATGGTGGTGGAG
1 TAAGGATGGTGGTGGAG
109121009 GGGGTAGTGG
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.20, C:0.00, G:0.54, T:0.26
Consensus pattern (17 bp):
TAAGGATGGTGGTGGAG
Found at i:109146173 original size:14 final size:12
Alignment explanation
Indices: 109146139--109146164 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
109146129 TTTAAGTCAA
109146139 GTAAATTTCGAG
1 GTAAATTTCGAG
109146151 GTAAATTTCGAG
1 GTAAATTTCGAG
109146163 GT
1 GT
109146165 CGAAATTTCT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.31, C:0.08, G:0.27, T:0.35
Consensus pattern (12 bp):
GTAAATTTCGAG
Found at i:109148411 original size:93 final size:93
Alignment explanation
Indices: 109148303--109148474 Score: 281
Period size: 93 Copynumber: 1.8 Consensus size: 93
109148293 CGCCCATAAG
* * *
109148303 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTTGCATCCACAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCACAAGTGAACTCGGACTCAACTCA
109148368 ACGAGCTCGGATGCCTAGTTACATCTCT
66 ACGAGCTCGGATGCCTAGTTACATCTCT
* *
109148396 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCACAAGTGAACTCGGACTCAACTCA
* *
109148461 ACGAGTTTGGATGC
66 ACGAGCTCGGATGC
109148475 TCAACCATCC
Statistics
Matches: 72, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.22
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCACAAGTGAACTCGGACTCAACTCA
ACGAGCTCGGATGCCTAGTTACATCTCT
Found at i:109148467 original size:46 final size:45
Alignment explanation
Indices: 109148296--109148465 Score: 182
Period size: 46 Copynumber: 3.7 Consensus size: 45
109148286 TGTAACCCGC
* * *
109148296 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTTGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTC-GGCATTCGCAT
* *
109148342 CCACAAGTGAACTCGGACTCAACTCAACGAGCTCGG-ATGC-CTAGTT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGCATTCGC-A--T
* *** *
109148388 ACATCTCTCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGCTCGG-CATTCGCAT
109148435 CCATAAGTGAACTCGGACTCAACTCAACGAG
1 CCATAAGTGAACTCGGACTCAACTCAACGAG
109148466 TTTGGATGCT
Statistics
Matches: 101, Mismatches: 16, Indels: 14
0.77 0.12 0.11
Matches are distributed among these distances:
43 1 0.01
44 2 0.02
45 2 0.02
46 59 0.58
47 32 0.32
49 4 0.04
50 1 0.01
ACGTcount: A:0.29, C:0.31, G:0.21, T:0.20
Consensus pattern (45 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGCATTCGCAT
Found at i:109148490 original size:46 final size:45
Alignment explanation
Indices: 109148347--109148490 Score: 120
Period size: 46 Copynumber: 3.1 Consensus size: 45
109148337 TGCATCCACA
*
109148347 AGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTA-CATCTCT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCC-A---ACCATC-CT
* *
109148396 --CGAACTCGGACTCAACTCAACGAGTTCGGA---CATTCGCATCCAT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCA-AC-CATCC-T
*
109148439 AAGTGAACTCGGACTCAACTCAACGAGTTTGGATGCTCAACCATCCT
1 -AGTGAACTCGGACTCAACTCAACGAGTTCGGATGC-CAACCATCCT
109148486 AGTGA
1 AGTGA
109148491 CATGTCACTT
Statistics
Matches: 79, Mismatches: 6, Indels: 23
0.73 0.06 0.21
Matches are distributed among these distances:
41 1 0.01
42 1 0.01
43 6 0.08
44 1 0.01
46 33 0.42
47 29 0.37
48 5 0.06
49 1 0.01
50 2 0.03
ACGTcount: A:0.28, C:0.28, G:0.20, T:0.23
Consensus pattern (45 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCAACCATCCT
Found at i:109150743 original size:92 final size:92
Alignment explanation
Indices: 109150586--109150771 Score: 354
Period size: 92 Copynumber: 2.0 Consensus size: 92
109150576 TGTACGTGTC
109150586 GGACCAACACTATATGGTGTGTAGGGCTGGATGGGTATTAAATGCCCTTAATGATATGTTGGAAT
1 GGACCAACACTATATGGTGTGTAGGGCTGGATGGGTATTAAATGCCCTTAATGATATGTTGGAAT
109150651 GGTCAGAGAAGGTGTGTAGTGGATGGG
66 GGTCAGAGAAGGTGTGTAGTGGATGGG
* *
109150678 GGACCGACACTATATGGTGTGTAGGGCTGGATGGGTATTAAATGCCCTTAATGATGTGTTGGAAT
1 GGACCAACACTATATGGTGTGTAGGGCTGGATGGGTATTAAATGCCCTTAATGATATGTTGGAAT
109150743 GGTCAGAGAAGGTGTGTAGTGGATGGG
66 GGTCAGAGAAGGTGTGTAGTGGATGGG
109150770 GG
1 GG
109150772 TGGGCAGGAT
Statistics
Matches: 92, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
92 92 1.00
ACGTcount: A:0.25, C:0.10, G:0.38, T:0.28
Consensus pattern (92 bp):
GGACCAACACTATATGGTGTGTAGGGCTGGATGGGTATTAAATGCCCTTAATGATATGTTGGAAT
GGTCAGAGAAGGTGTGTAGTGGATGGG
Found at i:109155722 original size:92 final size:92
Alignment explanation
Indices: 109155617--109155802 Score: 372
Period size: 92 Copynumber: 2.0 Consensus size: 92
109155607 ATGTTATGTG
109155617 TATTTAGAAAATAATATGATAATTAGAATTACATTTCGCACCTACAAATTACAATTGTTATGGAA
1 TATTTAGAAAATAATATGATAATTAGAATTACATTTCGCACCTACAAATTACAATTGTTATGGAA
109155682 AGGAGAAATTAAAAATAAATCAAATAT
66 AGGAGAAATTAAAAATAAATCAAATAT
109155709 TATTTAGAAAATAATATGATAATTAGAATTACATTTCGCACCTACAAATTACAATTGTTATGGAA
1 TATTTAGAAAATAATATGATAATTAGAATTACATTTCGCACCTACAAATTACAATTGTTATGGAA
109155774 AGGAGAAATTAAAAATAAATCAAATAT
66 AGGAGAAATTAAAAATAAATCAAATAT
109155801 TA
1 TA
109155803 AAACAATTCT
Statistics
Matches: 94, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
92 94 1.00
ACGTcount: A:0.49, C:0.09, G:0.11, T:0.32
Consensus pattern (92 bp):
TATTTAGAAAATAATATGATAATTAGAATTACATTTCGCACCTACAAATTACAATTGTTATGGAA
AGGAGAAATTAAAAATAAATCAAATAT
Found at i:109157108 original size:17 final size:18
Alignment explanation
Indices: 109157082--109157120 Score: 55
Period size: 18 Copynumber: 2.3 Consensus size: 18
109157072 AAGCTTGTGG
109157082 AAAA-TGTTCTC-AATAT
1 AAAATTGTTCTCTAATAT
*
109157098 AAAATTGTTCTCTCATAT
1 AAAATTGTTCTCTAATAT
109157116 AAAAT
1 AAAAT
109157121 CAAAAGTTTA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
16 4 0.20
17 7 0.35
18 9 0.45
ACGTcount: A:0.44, C:0.13, G:0.05, T:0.38
Consensus pattern (18 bp):
AAAATTGTTCTCTAATAT
Found at i:109157297 original size:15 final size:15
Alignment explanation
Indices: 109157277--109157307 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
109157267 AAAACAATAT
109157277 AACTCTAGACCTTTC
1 AACTCTAGACCTTTC
*
109157292 AACTCTTGACCTTTC
1 AACTCTAGACCTTTC
109157307 A
1 A
109157308 CTTACATGAC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.26, C:0.32, G:0.06, T:0.35
Consensus pattern (15 bp):
AACTCTAGACCTTTC
Found at i:109160678 original size:15 final size:15
Alignment explanation
Indices: 109160668--109160697 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
109160658 TCCCTTCTTG
109160668 ACCACGACCTTTTCC
1 ACCACGACCTTTTCC
*
109160683 ACCACGACCATTTCC
1 ACCACGACCTTTTCC
109160698 TCGATCTCCA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.23, C:0.47, G:0.07, T:0.23
Consensus pattern (15 bp):
ACCACGACCTTTTCC
Found at i:109161465 original size:17 final size:18
Alignment explanation
Indices: 109161439--109161477 Score: 55
Period size: 18 Copynumber: 2.3 Consensus size: 18
109161429 CAAATTGTGG
109161439 AAAA-TGTTCTC-AATAT
1 AAAATTGTTCTCTAATAT
*
109161455 AAAATTGTTCTCTCATAT
1 AAAATTGTTCTCTAATAT
109161473 AAAAT
1 AAAAT
109161478 CAAAAGTTTA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
16 4 0.20
17 7 0.35
18 9 0.45
ACGTcount: A:0.44, C:0.13, G:0.05, T:0.38
Consensus pattern (18 bp):
AAAATTGTTCTCTAATAT
Found at i:109161654 original size:15 final size:15
Alignment explanation
Indices: 109161634--109161664 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
109161624 AAAACAATAT
109161634 AACTCTAGACCTTTC
1 AACTCTAGACCTTTC
*
109161649 AACTCTTGACCTTTC
1 AACTCTAGACCTTTC
109161664 A
1 A
109161665 CTTACATGAC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.26, C:0.32, G:0.06, T:0.35
Consensus pattern (15 bp):
AACTCTAGACCTTTC
Found at i:109168881 original size:39 final size:39
Alignment explanation
Indices: 109168834--109169018 Score: 307
Period size: 39 Copynumber: 4.7 Consensus size: 39
109168824 TTCCAACACA
* *
109168834 AATGCCTTCGGGACTTAGCCCAGATATAACACCAACACG
1 AATGCCTTCGGGACTTAGCCCGGATATAACACCAGCACG
* *
109168873 AATACCTTCGGGACTTAGCCCGGATATAACACCAGCATG
1 AATGCCTTCGGGACTTAGCCCGGATATAACACCAGCACG
*
109168912 AATACCTTCGGGACTTAGCCCGGATATAACACCAGCACG
1 AATGCCTTCGGGACTTAGCCCGGATATAACACCAGCACG
*
109168951 AATGCCTTTGGGACTTAGCCCGGATATAACACCAGCACG
1 AATGCCTTCGGGACTTAGCCCGGATATAACACCAGCACG
*
109168990 AATGCCTTCGGGACTTAGCCCAGATATAA
1 AATGCCTTCGGGACTTAGCCCGGATATAA
109169019 ATCTCACACA
Statistics
Matches: 137, Mismatches: 9, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
39 137 1.00
ACGTcount: A:0.31, C:0.29, G:0.21, T:0.20
Consensus pattern (39 bp):
AATGCCTTCGGGACTTAGCCCGGATATAACACCAGCACG
Found at i:109173560 original size:18 final size:19
Alignment explanation
Indices: 109173537--109173588 Score: 65
Period size: 18 Copynumber: 2.8 Consensus size: 19
109173527 AGCCCGAATA
*
109173537 TATTATGTT-ATTAAAATT
1 TATTATATTAATTAAAATT
109173555 TATTATATTAATTAAAATT
1 TATTATATTAATTAAAATT
109173574 TA-TAT-TTATATTAAA
1 TATTATATTA-ATTAAA
109173589 TTACTAACCC
Statistics
Matches: 31, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
17 3 0.10
18 17 0.55
19 11 0.35
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.54
Consensus pattern (19 bp):
TATTATATTAATTAAAATT
Found at i:109180555 original size:3 final size:3
Alignment explanation
Indices: 109180547--109180571 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
109180537 ATAATTCTTT
109180547 ATA ATA ATA ATA ATA ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA A
109180572 ACACCCTTCT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
ATA
Found at i:109185334 original size:17 final size:18
Alignment explanation
Indices: 109185312--109185349 Score: 60
Period size: 17 Copynumber: 2.2 Consensus size: 18
109185302 ACTCTTATAT
*
109185312 AATATTTTTT-TATGAAA
1 AATATTTTTTATATAAAA
109185329 AATATTTTTTATATAAAA
1 AATATTTTTTATATAAAA
109185347 AAT
1 AAT
109185350 TTAAATTATT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 10 0.53
18 9 0.47
ACGTcount: A:0.47, C:0.00, G:0.03, T:0.50
Consensus pattern (18 bp):
AATATTTTTTATATAAAA
Found at i:109185346 original size:16 final size:16
Alignment explanation
Indices: 109185306--109185351 Score: 51
Period size: 16 Copynumber: 2.9 Consensus size: 16
109185296 CCAATAACTC
*
109185306 TTATATAATAT-TTTT
1 TTATATAAAATATTTT
109185321 TTATGA-AAAATATTTT
1 TTAT-ATAAAATATTTT
*
109185337 TTATATAAAAAATTT
1 TTATATAAAATATTT
109185352 AAATTATTTT
Statistics
Matches: 26, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
15 9 0.35
16 17 0.65
ACGTcount: A:0.43, C:0.00, G:0.02, T:0.54
Consensus pattern (16 bp):
TTATATAAAATATTTT
Found at i:109187128 original size:20 final size:21
Alignment explanation
Indices: 109187103--109187142 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
109187093 TGTGTCTTTA
*
109187103 TTTAAA-TTTATTAAAATATG
1 TTTAAAGTTAATTAAAATATG
*
109187123 TTTAAAGTTAATTAATATAT
1 TTTAAAGTTAATTAAAATAT
109187143 TAATGTTTCA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 6 0.35
21 11 0.65
ACGTcount: A:0.45, C:0.00, G:0.05, T:0.50
Consensus pattern (21 bp):
TTTAAAGTTAATTAAAATATG
Found at i:109188898 original size:6 final size:6
Alignment explanation
Indices: 109188836--109188897 Score: 110
Period size: 6 Copynumber: 10.7 Consensus size: 6
109188826 CTAATGAAGA
109188836 AAAATT AAAATT AAAATT AAAATT AAAATT AAAATT AAAATT -AAATT
1 AAAATT AAAATT AAAATT AAAATT AAAATT AAAATT AAAATT AAAATT
109188883 AAAATT AAAA-T AAAA
1 AAAATT AAAATT AAAA
109188898 AACATGGCAT
Statistics
Matches: 55, Mismatches: 0, Indels: 3
0.95 0.00 0.05
Matches are distributed among these distances:
5 10 0.18
6 45 0.82
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (6 bp):
AAAATT
Found at i:109189162 original size:4 final size:4
Alignment explanation
Indices: 109189153--109189177 Score: 50
Period size: 4 Copynumber: 6.2 Consensus size: 4
109189143 ACTATAGAAA
109189153 TATT TATT TATT TATT TATT TATT T
1 TATT TATT TATT TATT TATT TATT T
109189178 TGGGCATCTT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 21 1.00
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (4 bp):
TATT
Found at i:109194325 original size:31 final size:31
Alignment explanation
Indices: 109194290--109194348 Score: 84
Period size: 31 Copynumber: 1.9 Consensus size: 31
109194280 TTTTGGTCAT
109194290 TGAACTATTCGAAAGT-TTTCATTTAAGTTAC
1 TGAACTATTC-AAAGTCTTTCATTTAAGTTAC
* *
109194321 TGAACTATTCAAATTCTTTTATTTAAGT
1 TGAACTATTCAAAGTCTTTCATTTAAGT
109194349 CACTATTCAA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
30 4 0.16
31 21 0.84
ACGTcount: A:0.32, C:0.12, G:0.10, T:0.46
Consensus pattern (31 bp):
TGAACTATTCAAAGTCTTTCATTTAAGTTAC
Found at i:109199222 original size:34 final size:35
Alignment explanation
Indices: 109199168--109199237 Score: 97
Period size: 34 Copynumber: 2.0 Consensus size: 35
109199158 TGCACAGTCA
* *
109199168 AACAGTCTTAGGCCTAAGCCCCTTTCAATATCAAT
1 AACAGTCTTAGGCCTAAGCCCATCTCAATATCAAT
* *
109199203 AACAGT-TTGGGCCTTAGCCCATCTCAATATCAAT
1 AACAGTCTTAGGCCTAAGCCCATCTCAATATCAAT
109199237 A
1 A
109199238 TTAGTCATGC
Statistics
Matches: 31, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
34 25 0.81
35 6 0.19
ACGTcount: A:0.31, C:0.27, G:0.13, T:0.29
Consensus pattern (35 bp):
AACAGTCTTAGGCCTAAGCCCATCTCAATATCAAT
Found at i:109207977 original size:43 final size:43
Alignment explanation
Indices: 109207865--109207977 Score: 122
Period size: 42 Copynumber: 2.6 Consensus size: 43
109207855 TTTGGGATGT
* * ** *
109207865 TGGCATCGACT-TATGATTTACGTGTAAGACCATGTCTGGGACAT
1 TGGCATCGA-TATTTGA-TTACATGTAAGACCATGTCTAAGACAG
* * *
109207909 TGGCATC-ATATTTCATTTCATGTAAGACCCTGTCTAAGACAG
1 TGGCATCGATATTTGATTACATGTAAGACCATGTCTAAGACAG
109207951 TGGCATCGATATTTGATTACATGTAAG
1 TGGCATCGATATTTGATTACATGTAAG
109207978 TCCACGTTTG
Statistics
Matches: 57, Mismatches: 10, Indels: 5
0.79 0.14 0.07
Matches are distributed among these distances:
42 29 0.51
43 21 0.37
44 7 0.12
ACGTcount: A:0.27, C:0.18, G:0.21, T:0.34
Consensus pattern (43 bp):
TGGCATCGATATTTGATTACATGTAAGACCATGTCTAAGACAG
Found at i:109207998 original size:43 final size:43
Alignment explanation
Indices: 109207843--109207999 Score: 142
Period size: 43 Copynumber: 3.7 Consensus size: 43
109207833 TGTGTTTTCG
* * * *
109207843 TGTAAGACCACGTTTGGGATGTTGGCATCGACT-TATGATTTACG
1 TGTAAGACCACGTCTGGGACGTTGGCATCGA-TATTTGA-TTACA
* * * *
109207887 TGTAAGACCATGTCTGGGACATTGGCATC-ATATTTCATTTCA
1 TGTAAGACCACGTCTGGGACGTTGGCATCGATATTTGATTACA
**
109207929 TGTAAGACC-CTGTCTAAGACAG-TGGCATCGATATTTGATTACA
1 TGTAAGACCAC-GTCTGGGAC-GTTGGCATCGATATTTGATTACA
* *
109207972 TGTAAGTCCACGTTTGGGACGTTGGCAT
1 TGTAAGACCACGTCTGGGACGTTGGCAT
109208000 TGTACGAGCT
Statistics
Matches: 89, Mismatches: 18, Indels: 13
0.74 0.15 0.11
Matches are distributed among these distances:
42 28 0.31
43 35 0.39
44 26 0.29
ACGTcount: A:0.25, C:0.18, G:0.24, T:0.33
Consensus pattern (43 bp):
TGTAAGACCACGTCTGGGACGTTGGCATCGATATTTGATTACA
Found at i:109211407 original size:14 final size:13
Alignment explanation
Indices: 109211381--109211415 Score: 52
Period size: 14 Copynumber: 2.6 Consensus size: 13
109211371 AAGCCATGTC
109211381 GATTTAGGTTTAG
1 GATTTAGGTTTAG
*
109211394 GGTTTAGAGTTTAG
1 GATTTAG-GTTTAG
109211408 GATTTAGG
1 GATTTAGG
109211416 GTAGCCAAGC
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
13 7 0.37
14 12 0.63
ACGTcount: A:0.23, C:0.00, G:0.34, T:0.43
Consensus pattern (13 bp):
GATTTAGGTTTAG
Found at i:109224443 original size:38 final size:38
Alignment explanation
Indices: 109224413--109224503 Score: 137
Period size: 40 Copynumber: 2.3 Consensus size: 38
109224403 ATCTAACCCA
109224413 ACACACCATGTGGGGATAAAATCGACCCATCCAGCCCT
1 ACACACCATGTGGGGATAAAATCGACCCATCCAGCCCT
* *
109224451 ACACACCAAGTATAGGGATAAAATCGACCCATCCAGCCCT
1 ACACACC-A-TGTGGGGATAAAATCGACCCATCCAGCCCT
*
109224491 ACACACCAAGTGG
1 ACACACCATGTGG
109224504 TACTATAAAA
Statistics
Matches: 46, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
38 9 0.20
39 2 0.04
40 35 0.76
ACGTcount: A:0.35, C:0.33, G:0.18, T:0.14
Consensus pattern (38 bp):
ACACACCATGTGGGGATAAAATCGACCCATCCAGCCCT
Found at i:109224477 original size:40 final size:40
Alignment explanation
Indices: 109224425--109224501 Score: 154
Period size: 40 Copynumber: 1.9 Consensus size: 40
109224415 ACACCATGTG
109224425 GGGATAAAATCGACCCATCCAGCCCTACACACCAAGTATA
1 GGGATAAAATCGACCCATCCAGCCCTACACACCAAGTATA
109224465 GGGATAAAATCGACCCATCCAGCCCTACACACCAAGT
1 GGGATAAAATCGACCCATCCAGCCCTACACACCAAGT
109224502 GGTACTATAA
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 37 1.00
ACGTcount: A:0.36, C:0.34, G:0.16, T:0.14
Consensus pattern (40 bp):
GGGATAAAATCGACCCATCCAGCCCTACACACCAAGTATA
Found at i:109234175 original size:83 final size:83
Alignment explanation
Indices: 109234022--109234221 Score: 267
Period size: 83 Copynumber: 2.4 Consensus size: 83
109234012 ATATGTTATG
** * *
109234022 CACTCACAACAAGTGGCAGTAACTATAAATATGTGGCTTATCCAAAAACCCAGTGGCGGTTTGTT
1 CACTCACAACAAGTGGCAGTAACT-GCAA-ATGTGGCTTATCCAAAAACCCAGTGACAGTTTGTT
109234087 TAATTTGCAACCATGTTGTA
64 TAATTTGCAACCATGTTGTA
* *
109234107 CACTTACAACAAGTGGCAGTAACTGCAAATGTGGCTTGT-CAACAAACCCAGTGACAGTTTGTTT
1 CACTCACAACAAGTGGCAGTAACTGCAAATGTGGCTTATCCAA-AAACCCAGTGACAGTTTGTTT
* *
109234171 AATTTGCAACTATGTTGTG
65 AATTTGCAACCATGTTGTA
* * *
109234190 CACTCACAACCAGTGGCAATAACAGCAAATGT
1 CACTCACAACAAGTGGCAGTAACTGCAAATGT
109234222 TTTTATCTAA
Statistics
Matches: 102, Mismatches: 12, Indels: 4
0.86 0.10 0.03
Matches are distributed among these distances:
82 3 0.03
83 74 0.73
84 2 0.02
85 23 0.23
ACGTcount: A:0.33, C:0.21, G:0.19, T:0.28
Consensus pattern (83 bp):
CACTCACAACAAGTGGCAGTAACTGCAAATGTGGCTTATCCAAAAACCCAGTGACAGTTTGTTTA
ATTTGCAACCATGTTGTA
Found at i:109237322 original size:18 final size:19
Alignment explanation
Indices: 109237284--109237325 Score: 59
Period size: 18 Copynumber: 2.3 Consensus size: 19
109237274 TTTCACCTGC
*
109237284 TTATTACTTTATTTTAATA
1 TTATTACTTTATATTAATA
*
109237303 TTATTA-TTTATATTATTA
1 TTATTACTTTATATTAATA
109237321 TTATT
1 TTATT
109237326 CCTAATACAT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
18 15 0.71
19 6 0.29
ACGTcount: A:0.31, C:0.02, G:0.00, T:0.67
Consensus pattern (19 bp):
TTATTACTTTATATTAATA
Found at i:109237842 original size:6 final size:6
Alignment explanation
Indices: 109237833--109237871 Score: 51
Period size: 6 Copynumber: 6.5 Consensus size: 6
109237823 TATTATTTAA
* * *
109237833 ATTATC ATTATA ATTATC ATTTTC ATTATC ATTGTC ATT
1 ATTATC ATTATC ATTATC ATTATC ATTATC ATTATC ATT
109237872 TTTATTTTGC
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
6 28 1.00
ACGTcount: A:0.31, C:0.13, G:0.03, T:0.54
Consensus pattern (6 bp):
ATTATC
Found at i:109240015 original size:27 final size:27
Alignment explanation
Indices: 109239985--109240040 Score: 112
Period size: 27 Copynumber: 2.1 Consensus size: 27
109239975 ACGTTCTTCT
109239985 TGATCAAATCGTTGGTGGATATATCAG
1 TGATCAAATCGTTGGTGGATATATCAG
109240012 TGATCAAATCGTTGGTGGATATATCAG
1 TGATCAAATCGTTGGTGGATATATCAG
109240039 TG
1 TG
109240041 GTGAATTTAG
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 29 1.00
ACGTcount: A:0.29, C:0.11, G:0.27, T:0.34
Consensus pattern (27 bp):
TGATCAAATCGTTGGTGGATATATCAG
Found at i:109244983 original size:5 final size:6
Alignment explanation
Indices: 109244969--109244993 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
109244959 AAAAATAACC
109244969 AAAATA AAAATA AAAATA AAAATA A
1 AAAATA AAAATA AAAATA AAAATA A
109244994 TCACAATAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.84, C:0.00, G:0.00, T:0.16
Consensus pattern (6 bp):
AAAATA
Found at i:109255632 original size:15 final size:15
Alignment explanation
Indices: 109255612--109255642 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
109255602 AGGTTATCAC
109255612 TTGTTTCTTAAACCT
1 TTGTTTCTTAAACCT
109255627 TTGTTTCTTAAACCT
1 TTGTTTCTTAAACCT
109255642 T
1 T
109255643 GCTGCTACCA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.19, C:0.19, G:0.06, T:0.55
Consensus pattern (15 bp):
TTGTTTCTTAAACCT
Found at i:109260741 original size:20 final size:20
Alignment explanation
Indices: 109260690--109260743 Score: 63
Period size: 20 Copynumber: 2.7 Consensus size: 20
109260680 TGCTCTTATA
* *
109260690 TATTATATAAGAAATAGTTT
1 TATTATATAAAAAATAGTTG
* *
109260710 TATTTTAAAAAAAATAGTTG
1 TATTATATAAAAAATAGTTG
*
109260730 TATTACATAAAAAA
1 TATTATATAAAAAA
109260744 AATTCAAAGT
Statistics
Matches: 27, Mismatches: 7, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
20 27 1.00
ACGTcount: A:0.52, C:0.02, G:0.07, T:0.39
Consensus pattern (20 bp):
TATTATATAAAAAATAGTTG
Found at i:109260986 original size:24 final size:25
Alignment explanation
Indices: 109260958--109261007 Score: 68
Period size: 25 Copynumber: 2.0 Consensus size: 25
109260948 GCCATCAATA
109260958 TTTATATTATTTA-TT-AATTTGGCC
1 TTTAT-TTATTTAGTTAAATTTGGCC
*
109260982 TTTATTTTTTTAGTTAAATTTGGCC
1 TTTATTTATTTAGTTAAATTTGGCC
109261007 T
1 T
109261008 CAATCTTTTT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
23 6 0.26
24 7 0.30
25 10 0.43
ACGTcount: A:0.22, C:0.08, G:0.10, T:0.60
Consensus pattern (25 bp):
TTTATTTATTTAGTTAAATTTGGCC
Found at i:109265198 original size:17 final size:16
Alignment explanation
Indices: 109265155--109265205 Score: 50
Period size: 19 Copynumber: 2.9 Consensus size: 16
109265145 TTTATTTATG
109265155 ATTTTTAATAATTTTT
1 ATTTTTAATAATTTTT
109265171 ATTTTGATAAT-ATTTTT
1 ATTTT--TAATAATTTTT
109265188 GAATTTTTAATTAATTTT
1 --ATTTTTAA-TAATTTT
109265206 CAAATTATAA
Statistics
Matches: 29, Mismatches: 0, Indels: 9
0.76 0.00 0.24
Matches are distributed among these distances:
16 5 0.17
17 9 0.31
18 5 0.17
19 10 0.34
ACGTcount: A:0.31, C:0.00, G:0.04, T:0.65
Consensus pattern (16 bp):
ATTTTTAATAATTTTT
Found at i:109265216 original size:35 final size:34
Alignment explanation
Indices: 109265147--109265216 Score: 79
Period size: 35 Copynumber: 2.0 Consensus size: 34
109265137 ATATATTTTT
* **
109265147 TATTTATGATTTTTAATAATTTTTATTTTGATAA
1 TATTTATGATTTTTAATAATTTTCAAATTGATAA
*
109265181 TATTTTTGAATTTTTAATTAATTTTCAAATT-ATAA
1 TATTTATG-ATTTTTAA-TAATTTTCAAATTGATAA
109265216 T
1 T
109265217 TTCATGTCAT
Statistics
Matches: 30, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
34 7 0.23
35 13 0.43
36 10 0.33
ACGTcount: A:0.34, C:0.01, G:0.04, T:0.60
Consensus pattern (34 bp):
TATTTATGATTTTTAATAATTTTCAAATTGATAA
Found at i:109268575 original size:24 final size:24
Alignment explanation
Indices: 109268538--109268604 Score: 89
Period size: 24 Copynumber: 2.8 Consensus size: 24
109268528 TATAAAATTT
* *
109268538 AAAAAATATCTATTATTTTTCATA
1 AAAAAATATATATTATTTTTAATA
* * *
109268562 AAAAAATAAATATTATTTCTAATT
1 AAAAAATATATATTATTTTTAATA
109268586 AAAAAATATATATTATTTT
1 AAAAAATATATATTATTTT
109268605 GAAGGTAATT
Statistics
Matches: 36, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
24 36 1.00
ACGTcount: A:0.51, C:0.04, G:0.00, T:0.45
Consensus pattern (24 bp):
AAAAAATATATATTATTTTTAATA
Found at i:109273660 original size:26 final size:26
Alignment explanation
Indices: 109273626--109273681 Score: 94
Period size: 26 Copynumber: 2.2 Consensus size: 26
109273616 ACTTAAAACC
109273626 AATAGAATTATTATTAAAAATAATTT
1 AATAGAATTATTATTAAAAATAATTT
* *
109273652 AATATAATTATTATTAAATATAATTT
1 AATAGAATTATTATTAAAAATAATTT
109273678 AATA
1 AATA
109273682 AAAATAATAA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.54, C:0.00, G:0.02, T:0.45
Consensus pattern (26 bp):
AATAGAATTATTATTAAAAATAATTT
Found at i:109273742 original size:16 final size:16
Alignment explanation
Indices: 109273706--109273760 Score: 60
Period size: 18 Copynumber: 3.4 Consensus size: 16
109273696 TAATTTAATC
109273706 ATATTTTTATA--TAA
1 ATATTTTTATATTTAA
*
109273720 CTATTTTTATATTTAA
1 ATATTTTTATATTTAA
*
109273736 ATATTTTAAATATTTTAA
1 ATATTTT-TATA-TTTAA
109273754 ATATTTT
1 ATATTTT
109273761 ATTTTTATAT
Statistics
Matches: 34, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
14 10 0.29
16 9 0.26
17 3 0.09
18 12 0.35
ACGTcount: A:0.38, C:0.02, G:0.00, T:0.60
Consensus pattern (16 bp):
ATATTTTTATATTTAA
Found at i:109273745 original size:9 final size:9
Alignment explanation
Indices: 109273731--109273761 Score: 62
Period size: 9 Copynumber: 3.4 Consensus size: 9
109273721 TATTTTTATA
109273731 TTTAAATAT
1 TTTAAATAT
109273740 TTTAAATAT
1 TTTAAATAT
109273749 TTTAAATAT
1 TTTAAATAT
109273758 TTTA
1 TTTA
109273762 TTTTTATATT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 22 1.00
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (9 bp):
TTTAAATAT
Found at i:109277908 original size:16 final size:16
Alignment explanation
Indices: 109277872--109277918 Score: 60
Period size: 16 Copynumber: 2.9 Consensus size: 16
109277862 ACGCCTATAT
*
109277872 ATTATAAATTA-TTTA
1 ATTAAAAATTATTTTA
*
109277887 AATAAAAATTATTTTA
1 ATTAAAAATTATTTTA
109277903 ATTAAAATATTATTTT
1 ATTAAAA-ATTATTTT
109277919 TAATAAAATA
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
15 9 0.33
16 10 0.37
17 8 0.30
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (16 bp):
ATTAAAAATTATTTTA
Found at i:109277916 original size:17 final size:16
Alignment explanation
Indices: 109277879--109277930 Score: 70
Period size: 17 Copynumber: 3.2 Consensus size: 16
109277869 TATATTATAA
*
109277879 ATTATTTAAATAAAA-
1 ATTATTTTAATAAAAT
109277894 ATTATTTTAATTAAAAT
1 ATTATTTTAA-TAAAAT
109277911 ATTATTTTTAATAAAAT
1 ATTA-TTTTAATAAAAT
109277928 ATT
1 ATT
109277931 TAAATTTCAC
Statistics
Matches: 33, Mismatches: 1, Indels: 4
0.87 0.03 0.11
Matches are distributed among these distances:
15 9 0.27
16 5 0.15
17 13 0.39
18 6 0.18
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (16 bp):
ATTATTTTAATAAAAT
Found at i:109278397 original size:16 final size:15
Alignment explanation
Indices: 109278376--109278428 Score: 52
Period size: 16 Copynumber: 3.3 Consensus size: 15
109278366 ATTATCTTTC
109278376 TATAACAATATGCTAT
1 TATAACAATAT-CTAT
* *
109278392 TATAACAATTATTTTT
1 TATAACAA-TATCTAT
109278408 CTATAACAATATACTAT
1 -TATAACAATAT-CTAT
109278425 TATA
1 TATA
109278429 CGAGACTTTA
Statistics
Matches: 30, Mismatches: 4, Indels: 6
0.75 0.10 0.15
Matches are distributed among these distances:
16 17 0.57
17 13 0.43
ACGTcount: A:0.43, C:0.11, G:0.02, T:0.43
Consensus pattern (15 bp):
TATAACAATATCTAT
Found at i:109278403 original size:33 final size:33
Alignment explanation
Indices: 109278358--109278428 Score: 115
Period size: 33 Copynumber: 2.2 Consensus size: 33
109278348 TATTATGGAT
* *
109278358 TTATAACGATTATCTTTCTATAACAATATGCTA
1 TTATAACAATTATCTTTCTATAACAATATACTA
*
109278391 TTATAACAATTATTTTTCTATAACAATATACTA
1 TTATAACAATTATCTTTCTATAACAATATACTA
109278424 TTATA
1 TTATA
109278429 CGAGACTTTA
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
33 35 1.00
ACGTcount: A:0.39, C:0.13, G:0.03, T:0.45
Consensus pattern (33 bp):
TTATAACAATTATCTTTCTATAACAATATACTA
Found at i:109278416 original size:17 final size:17
Alignment explanation
Indices: 109278359--109278417 Score: 68
Period size: 17 Copynumber: 3.5 Consensus size: 17
109278349 ATTATGGATT
*
109278359 TATAACGATTATCTTTC
1 TATAACAATTATCTTTC
*
109278376 TATAACAA-TATGCTAT-
1 TATAACAATTAT-CTTTC
*
109278392 TATAACAATTATTTTTC
1 TATAACAATTATCTTTC
109278409 TATAACAAT
1 TATAACAAT
109278418 ATACTATTAT
Statistics
Matches: 35, Mismatches: 4, Indels: 6
0.78 0.09 0.13
Matches are distributed among these distances:
16 13 0.37
17 22 0.63
ACGTcount: A:0.39, C:0.14, G:0.03, T:0.44
Consensus pattern (17 bp):
TATAACAATTATCTTTC
Found at i:109286055 original size:10 final size:10
Alignment explanation
Indices: 109286026--109286106 Score: 53
Period size: 10 Copynumber: 8.4 Consensus size: 10
109286016 TATTTACGAA
109286026 TTTTATAATT
1 TTTTATAATT
*
109286036 TTTTA-CATT
1 TTTTATAATT
109286045 TTTTATAATT
1 TTTTATAATT
*
109286055 TTCTTATGA--
1 TT-TTATAATT
* **
109286064 CTTTATAAAA
1 TTTTATAATT
*
109286074 TTTTATAAAT
1 TTTTATAATT
*
109286084 TTTTATGATT
1 TTTTATAATT
*
109286094 TTCT-TAATT
1 TTTTATAATT
109286103 TTTT
1 TTTT
109286107 TCTAATTTTA
Statistics
Matches: 55, Mismatches: 12, Indels: 9
0.72 0.16 0.12
Matches are distributed among these distances:
8 5 0.09
9 16 0.29
10 29 0.53
11 5 0.09
ACGTcount: A:0.28, C:0.05, G:0.02, T:0.64
Consensus pattern (10 bp):
TTTTATAATT
Found at i:109286168 original size:17 final size:18
Alignment explanation
Indices: 109286140--109286174 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
109286130 TATTTCTATA
109286140 TTTTTTACTAAAATTTAT
1 TTTTTTACTAAAATTTAT
*
109286158 TTTTTTA-TAAATTTTAT
1 TTTTTTACTAAAATTTAT
109286175 AAATTTTTAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 9 0.56
18 7 0.44
ACGTcount: A:0.31, C:0.03, G:0.00, T:0.66
Consensus pattern (18 bp):
TTTTTTACTAAAATTTAT
Found at i:109286468 original size:94 final size:91
Alignment explanation
Indices: 109286281--109286518 Score: 327
Period size: 93 Copynumber: 2.6 Consensus size: 91
109286271 CAATTGAGTG
* * *
109286281 AAAAAAAGCAGGGGCTTAATTGCTTTTTTCGAAAATGTTTGAGGGCCTTTTTATGCACTTTGAAA
1 AAAAAAAGCAGGGGCTTAATTGCTTTTTTTGAAAAAGTTTAAGGG-CTTTTTATGCACTTTGAAA
*
109286346 GTTCAAGTGTCCAATTGAGTGCAAAAA
65 GTTCAAGTGCCCAATTGAGTGCAAAAA
* *
109286373 AAAAAAGAGCAAGGGCTTAATTGCTTTTTTTGAAAAAGCTTAAGGGTCTTTTTGATGCA-TTGTG
1 AAAAAA-AGCAGGGGCTTAATTGCTTTTTTTGAAAAAGTTTAAGGG-CTTTTT-ATGCACTT-TG
*
109286437 AAAGTTCAAGTGCCCAAGTT-TGTGCAAAAA
62 AAAGTTCAAGTGCCCAA-TTGAGTGCAAAAA
* *
109286467 AAAAAAAGTAGGGGCTTAATTGCTTTTTTTCAAAAAGTTTAAGGGCTTTTTA
1 AAAAAAAGCAGGGGCTTAATTGCTTTTTTTGAAAAAGTTTAAGGGCTTTTTA
109286519 CACCATTAAG
Statistics
Matches: 130, Mismatches: 12, Indels: 9
0.86 0.08 0.06
Matches are distributed among these distances:
91 1 0.01
92 12 0.09
93 77 0.59
94 38 0.29
95 2 0.02
ACGTcount: A:0.34, C:0.11, G:0.21, T:0.34
Consensus pattern (91 bp):
AAAAAAAGCAGGGGCTTAATTGCTTTTTTTGAAAAAGTTTAAGGGCTTTTTATGCACTTTGAAAG
TTCAAGTGCCCAATTGAGTGCAAAAA
Found at i:109295348 original size:43 final size:43
Alignment explanation
Indices: 109295290--109295646 Score: 387
Period size: 43 Copynumber: 8.3 Consensus size: 43
109295280 CGTTTTTTAG
* * *
109295290 AAAAAACGCCGCTAAAGACCAGGACCTTTAGCGGCGCTTTTTT
1 AAAAAACACCGCTAAAGACCAAGACCTTTTGCGGCGCTTTTTT
* * * *
109295333 AAAAAATACCCCTAAATACCAAGA-CTTTTCGCGGCGCTTTTAT
1 AAAAAACACCGCTAAAGACCAAGACCTTTT-GCGGCGCTTTTTT
* * *
109295376 -AATAACGCCGCTAAAGACCAGGA-CTTTTGCGGCGCTTTTTT
1 AAAAAACACCGCTAAAGACCAAGACCTTTTGCGGCGCTTTTTT
** *
109295417 AAAAAATGCCGCTAAAGACTAAGACCTTTTGCGGCGCTTTTTT
1 AAAAAACACCGCTAAAGACCAAGACCTTTTGCGGCGCTTTTTT
* * *
109295460 AAAAAACGCCGCTAAAGATCAAGACCTTTAGCGGCGCTTTTTT
1 AAAAAACACCGCTAAAGACCAAGACCTTTTGCGGCGCTTTTTT
* * * * *
109295503 AAAAAACACCGCTAAAGACGAAGACTTTTTGTGACGCTTTTTA
1 AAAAAACACCGCTAAAGACCAAGACCTTTTGCGGCGCTTTTTT
* * *
109295546 AAAAAACGCCGCTAAAGACCAAGACTTTTTGCGGCGCTTTTAT
1 AAAAAACACCGCTAAAGACCAAGACCTTTTGCGGCGCTTTTTT
* * * * * * *
109295589 AAAAAACGCCACTAAAGATCAGGTCCTTTCGCGGCACTTTTTT
1 AAAAAACACCGCTAAAGACCAAGACCTTTTGCGGCGCTTTTTT
* *
109295632 AAAAATCGCCGCTAA
1 AAAAAACACCGCTAA
109295647 GTTGCCCAGT
Statistics
Matches: 265, Mismatches: 46, Indels: 6
0.84 0.15 0.02
Matches are distributed among these distances:
41 12 0.05
42 45 0.17
43 208 0.78
ACGTcount: A:0.32, C:0.24, G:0.18, T:0.27
Consensus pattern (43 bp):
AAAAAACACCGCTAAAGACCAAGACCTTTTGCGGCGCTTTTTT
Found at i:109295576 original size:129 final size:128
Alignment explanation
Indices: 109295276--109295646 Score: 474
Period size: 129 Copynumber: 2.9 Consensus size: 128
109295266 GCAAAAATTC
* * * **
109295276 GTGACGTTTTTTAGAAAAAACGCCGCTAAAGACCAGGACCTTTAGCGGCGCTTTTTTAAAAAATA
1 GTGACGCTTTTTA-AAAAAACGCCGCTAAAGACCAAGACCTTTTGCGGCGCTTTTTTAAAAAACG
* * * * * * *
109295341 CCCCTAAATACCAAGACTTTTCGCGGCGCTTTTAT-AATAACGCCGCTAAAGACCAGGACTTTT
65 CCACTAAAGATCAAGACCTTTCGCGGCGCTTTTTTAAAAAACGCCGCTAAAGACCAAGACTTTT
* * * * *
109295404 GCGGCGCTTTTTTAAAAAATGCCGCTAAAGACTAAGACCTTTTGCGGCGCTTTTTTAAAAAACGC
1 GTGACGCTTTTTAAAAAAACGCCGCTAAAGACCAAGACCTTTTGCGGCGCTTTTTTAAAAAACGC
* * * *
109295469 CGCTAAAGATCAAGACCTTTAGCGGCGCTTTTTTAAAAAACACCGCTAAAGACGAAGACTTTTT
66 CACTAAAGATCAAGACCTTTCGCGGCGCTTTTTTAAAAAACGCCGCTAAAGACCAAGAC-TTTT
* *
109295533 GTGACGCTTTTTAAAAAAACGCCGCTAAAGACCAAGACTTTTTGCGGCGCTTTTATAAAAAACGC
1 GTGACGCTTTTTAAAAAAACGCCGCTAAAGACCAAGACCTTTTGCGGCGCTTTTTTAAAAAACGC
* * * *
109295598 CACTAAAGATCAGGTCCTTTCGCGGCACTTTTTTAAAAATCGCCGCTAA
66 CACTAAAGATCAAGACCTTTCGCGGCGCTTTTTTAAAAAACGCCGCTAA
109295647 GTTGCCCAGT
Statistics
Matches: 207, Mismatches: 34, Indels: 3
0.85 0.14 0.01
Matches are distributed among these distances:
127 74 0.36
128 29 0.14
129 104 0.50
ACGTcount: A:0.32, C:0.23, G:0.18, T:0.27
Consensus pattern (128 bp):
GTGACGCTTTTTAAAAAAACGCCGCTAAAGACCAAGACCTTTTGCGGCGCTTTTTTAAAAAACGC
CACTAAAGATCAAGACCTTTCGCGGCGCTTTTTTAAAAAACGCCGCTAAAGACCAAGACTTTT
Found at i:109295960 original size:21 final size:21
Alignment explanation
Indices: 109295934--109295974 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
109295924 GTTCTGCTTC
*
109295934 GCCTCCCTCGCTGCTACCTCT
1 GCCTCCCTCACTGCTACCTCT
*
109295955 GCCTCCCTCACTGCTGCCTC
1 GCCTCCCTCACTGCTACCTC
109295975 CGCTCTAAGT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.05, C:0.54, G:0.15, T:0.27
Consensus pattern (21 bp):
GCCTCCCTCACTGCTACCTCT
Found at i:109297435 original size:30 final size:30
Alignment explanation
Indices: 109297399--109297459 Score: 113
Period size: 30 Copynumber: 2.0 Consensus size: 30
109297389 ATCATGATCA
*
109297399 AAATTCACGAGTTGATATAGCACAGAACTT
1 AAATTCACGAGTTGATATAACACAGAACTT
109297429 AAATTCACGAGTTGATATAACACAGAACTT
1 AAATTCACGAGTTGATATAACACAGAACTT
109297459 A
1 A
109297460 TTTGGAAGAC
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.43, C:0.16, G:0.15, T:0.26
Consensus pattern (30 bp):
AAATTCACGAGTTGATATAACACAGAACTT
Found at i:109300916 original size:14 final size:14
Alignment explanation
Indices: 109300881--109300957 Score: 68
Period size: 14 Copynumber: 5.6 Consensus size: 14
109300871 ACCCTAAACT
*
109300881 CTTAATCCCTAAACC
1 CTTAACCCCT-AACC
* *
109300896 CTAAACCCCTCACC
1 CTTAACCCCTAACC
*
109300910 CTTAACCCTTAACC
1 CTTAACCCCTAACC
* *
109300924 CCTAACACCTAA-C
1 CTTAACCCCTAACC
*
109300937 CTTAAACCC-AACC
1 CTTAACCCCTAACC
109300950 CTTAACCC
1 CTTAACCC
109300958 ACCTTTAAAC
Statistics
Matches: 48, Mismatches: 13, Indels: 4
0.74 0.20 0.06
Matches are distributed among these distances:
12 2 0.04
13 15 0.31
14 23 0.48
15 8 0.17
ACGTcount: A:0.32, C:0.47, G:0.00, T:0.21
Consensus pattern (14 bp):
CTTAACCCCTAACC
Found at i:109300916 original size:21 final size:21
Alignment explanation
Indices: 109300870--109300957 Score: 83
Period size: 21 Copynumber: 4.2 Consensus size: 21
109300860 AACTAATCTA
* * *
109300870 AACCCTAAACTCTTAATCCCTA
1 AACCCTAAACCCCTAA-CCCTT
*
109300892 AACCCTAAACCCCTCACCCTT
1 AACCCTAAACCCCTAACCCTT
*
109300913 AACCCTTAACCCCTAACACC-T
1 AACCCTAAACCCCTAAC-CCTT
*
109300934 AACCTTAAA-CCC-AACCCTT
1 AACCCTAAACCCCTAACCCTT
109300953 AACCC
1 AACCC
109300958 ACCTTTAAAC
Statistics
Matches: 55, Mismatches: 9, Indels: 7
0.77 0.13 0.10
Matches are distributed among these distances:
18 2 0.04
19 8 0.15
20 3 0.05
21 27 0.49
22 15 0.27
ACGTcount: A:0.34, C:0.45, G:0.00, T:0.20
Consensus pattern (21 bp):
AACCCTAAACCCCTAACCCTT
Found at i:109301004 original size:15 final size:15
Alignment explanation
Indices: 109300979--109301021 Score: 61
Period size: 14 Copynumber: 2.9 Consensus size: 15
109300969 ATAGTTAACT
109300979 CATAAACCTTAAACC
1 CATAAACCTTAAACC
* *
109300994 CATATAGCTTAAA-C
1 CATAAACCTTAAACC
109301008 CATAAACCTTAAAC
1 CATAAACCTTAAAC
109301022 TATAATGATA
Statistics
Matches: 23, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
14 12 0.52
15 11 0.48
ACGTcount: A:0.47, C:0.28, G:0.02, T:0.23
Consensus pattern (15 bp):
CATAAACCTTAAACC
Found at i:109301018 original size:14 final size:14
Alignment explanation
Indices: 109300979--109301026 Score: 60
Period size: 14 Copynumber: 3.4 Consensus size: 14
109300969 ATAGTTAACT
109300979 CATAAACCTTAAACC
1 CATAAACCTTAAA-C
* *
109300994 CATATAGCTTAAAC
1 CATAAACCTTAAAC
109301008 CATAAACCTTAAAC
1 CATAAACCTTAAAC
*
109301022 TATAA
1 CATAA
109301027 TGATAATTAA
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
14 17 0.61
15 11 0.39
ACGTcount: A:0.48, C:0.25, G:0.02, T:0.25
Consensus pattern (14 bp):
CATAAACCTTAAAC
Found at i:109301365 original size:54 final size:55
Alignment explanation
Indices: 109301306--109301420 Score: 144
Period size: 54 Copynumber: 2.1 Consensus size: 55
109301296 GTTTTTTGGG
* *
109301306 GTTTAGTATTTTAAGGGTTATAGTTTACG-GTTTAAGATTTTTT-AAGGTTTAGGT
1 GTTTAGTATTTTAAGGATTATAGATTA-GTGTTTAAGATTTTTTGAAGGTTTAGGT
* * **
109301360 GTTTAGTGTTTTAAGGATTATAGATTAGTGTTTATGATTTTTTGTGGGTTTAGGT
1 GTTTAGTATTTTAAGGATTATAGATTAGTGTTTAAGATTTTTTGAAGGTTTAGGT
*
109301415 TTTTAG
1 GTTTAG
109301421 GGGTTATATG
Statistics
Matches: 52, Mismatches: 7, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
53 1 0.02
54 37 0.71
55 14 0.27
ACGTcount: A:0.22, C:0.01, G:0.25, T:0.52
Consensus pattern (55 bp):
GTTTAGTATTTTAAGGATTATAGATTAGTGTTTAAGATTTTTTGAAGGTTTAGGT
Found at i:109301490 original size:41 final size:41
Alignment explanation
Indices: 109301433--109301816 Score: 522
Period size: 41 Copynumber: 9.4 Consensus size: 41
109301423 GTTATATGAC
* *
109301433 TTTTAGCGGCGTTTTACTAAAAGCGCCGCTAATGCTTCGAT
1 TTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTTCGGT
* * * *
109301474 TTTTAGCGGCGTTTTACTAAAAGCGTCGCTAATGCTCCGGC
1 TTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTTCGGT
* *
109301515 TTTTAGCGGCGTTTTACCAAAAGTGCCGCTAATGCTCCGGT
1 TTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTTCGGT
* * *
109301556 TGTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCCAGT
1 TTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTTCGGT
*
109301597 TTTTAGTGGCGTTTTACCAAAAGCGCCGCTAATGC-TCTGGT
1 TTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTTC-GGT
* *
109301638 TTTTAGCGGCGTTTTACCAAAAGCGTCGCTAATGCTCCGGT
1 TTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTTCGGT
*
109301679 TTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATG-ATCGGGT
1 TTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTTC-GGT
* *
109301720 TTTTAGCGGCGTTTTACAAAAAGCGCCGCTAATGCTCCGGT
1 TTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTTCGGT
* * * * *
109301761 TTTTAGCAGCGTTTTAACAAAAAACGCCGCTATTGC-TCTGT
1 TTTTAGCGGCGTTTT-ACCAAAAGCGCCGCTAATGCTTCGGT
109301802 TTTTAGCGGCGTTTT
1 TTTTAGCGGCGTTTT
109301817 TGGTAAAACG
Statistics
Matches: 308, Mismatches: 30, Indels: 10
0.89 0.09 0.03
Matches are distributed among these distances:
40 2 0.01
41 286 0.93
42 20 0.06
ACGTcount: A:0.21, C:0.23, G:0.24, T:0.32
Consensus pattern (41 bp):
TTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTTCGGT
Found at i:109301886 original size:12 final size:12
Alignment explanation
Indices: 109301871--109301896 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
109301861 GTTTTTTGAT
109301871 AAAACGCCGCTA
1 AAAACGCCGCTA
109301883 AAAACGCCGCTA
1 AAAACGCCGCTA
109301895 AA
1 AA
109301897 GCCCTATTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.46, C:0.31, G:0.15, T:0.08
Consensus pattern (12 bp):
AAAACGCCGCTA
Found at i:109304451 original size:47 final size:47
Alignment explanation
Indices: 109304397--109304492 Score: 131
Period size: 47 Copynumber: 2.0 Consensus size: 47
109304387 CACCTAGCAC
* *
109304397 ACAATTTTAAATGGGGCTGATCCTGCTC-CTAATACTGCTATTTATTT
1 ACAATTTTAAATGGGGCTAATCCTACTCTC-AATACTGCTATTTATTT
* * *
109304444 ACAATTTTAAATGGGGTTAATCCTACTCTCAATAGTGTTATTTATTT
1 ACAATTTTAAATGGGGCTAATCCTACTCTCAATACTGCTATTTATTT
109304491 AC
1 AC
109304493 TGTTTAGGTG
Statistics
Matches: 43, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
47 42 0.98
48 1 0.02
ACGTcount: A:0.28, C:0.17, G:0.14, T:0.42
Consensus pattern (47 bp):
ACAATTTTAAATGGGGCTAATCCTACTCTCAATACTGCTATTTATTT
Found at i:109308425 original size:28 final size:28
Alignment explanation
Indices: 109308385--109308442 Score: 107
Period size: 28 Copynumber: 2.1 Consensus size: 28
109308375 TATTGTTAAG
109308385 AAAAATTTTAAAAGTATCAAATCAATTC
1 AAAAATTTTAAAAGTATCAAATCAATTC
*
109308413 AAAAATTTTAAAAGTATCAAATTAATTC
1 AAAAATTTTAAAAGTATCAAATCAATTC
109308441 AA
1 AA
109308443 GAGCTTAATT
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.55, C:0.09, G:0.03, T:0.33
Consensus pattern (28 bp):
AAAAATTTTAAAAGTATCAAATCAATTC
Found at i:109320944 original size:23 final size:23
Alignment explanation
Indices: 109320918--109320970 Score: 61
Period size: 23 Copynumber: 2.3 Consensus size: 23
109320908 TTGGTGGAAG
*
109320918 CATTCTGACACTACGGTGTAATT
1 CATTCTGACACTACGGTGCAATT
* ** *
109320941 CATTTTGGTATTACGGTGCAATT
1 CATTCTGACACTACGGTGCAATT
109320964 CATTCTG
1 CATTCTG
109320971 TAACACCTAT
Statistics
Matches: 24, Mismatches: 6, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.23, C:0.19, G:0.19, T:0.40
Consensus pattern (23 bp):
CATTCTGACACTACGGTGCAATT
Found at i:109325559 original size:27 final size:26
Alignment explanation
Indices: 109325519--109325678 Score: 209
Period size: 27 Copynumber: 6.0 Consensus size: 26
109325509 AGGAAGTGTC
*
109325519 CTGGTGGCTATGCCACA-ATTATCTGAT
1 CTGGTGGCTCTGCCACATA-TATCTG-T
109325546 CTGGTGGCTCTGCCACATATATCTGT
1 CTGGTGGCTCTGCCACATATATCTGT
*
109325572 CCTGGTGGCTATGCCACA-ATTATCTGT
1 -CTGGTGGCTCTGCCACATA-TATCTGT
*
109325599 CCTAGTGGCTCTGCCACATATATCTGTT
1 -CTGGTGGCTCTGCCACATATATCTG-T
109325627 CTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTCTGCCACATATATCTG-T
109325654 CTGGTGGCTCTGCCACA-ATATCTGT
1 CTGGTGGCTCTGCCACATATATCTGT
109325679 ATCTAGTGAC
Statistics
Matches: 123, Mismatches: 5, Indels: 12
0.88 0.04 0.09
Matches are distributed among these distances:
25 1 0.01
26 9 0.07
27 110 0.89
28 3 0.02
ACGTcount: A:0.17, C:0.26, G:0.22, T:0.34
Consensus pattern (26 bp):
CTGGTGGCTCTGCCACATATATCTGT
Found at i:109325597 original size:54 final size:53
Alignment explanation
Indices: 109325515--109325678 Score: 251
Period size: 54 Copynumber: 3.1 Consensus size: 53
109325505 TTGGAGGAAG
109325515 TGTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATC
1 TGTCCTGGTGGCTATGCCACAATTATCTG-TCTGGTGGCTCTGCCACATATATC
*
109325569 TGTCCTGGTGGCTATGCCACAATTATCTGTCCTAGTGGCTCTGCCACATATATC
1 TGTCCTGGTGGCTATGCCACAATTATCTGT-CTGGTGGCTCTGCCACATATATC
* *
109325623 TGTTCTGGTGGCTCTGCCAC-ATATATCTGTTCTGGTGGCTCTGCCACA-ATATC
1 TGTCCTGGTGGCTATGCCACAAT-TATCTG-TCTGGTGGCTCTGCCACATATATC
109325676 TGT
1 TGT
109325679 ATCTAGTGAC
Statistics
Matches: 103, Mismatches: 4, Indels: 7
0.90 0.04 0.06
Matches are distributed among these distances:
53 11 0.11
54 91 0.88
55 1 0.01
ACGTcount: A:0.17, C:0.26, G:0.22, T:0.35
Consensus pattern (53 bp):
TGTCCTGGTGGCTATGCCACAATTATCTGTCTGGTGGCTCTGCCACATATATC
Done.