Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A06
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 115140250
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2234201 characters in sequence are not A, C, G, or T
File 328 of 345
Found at i:110079959 original size:6 final size:6
Alignment explanation
Indices: 110079948--110079976 Score: 58
Period size: 6 Copynumber: 4.8 Consensus size: 6
110079938 CACCATAATG
110079948 GTAACA GTAACA GTAACA GTAACA GTAAC
1 GTAACA GTAACA GTAACA GTAACA GTAAC
110079977 GGTACACAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.48, C:0.17, G:0.17, T:0.17
Consensus pattern (6 bp):
GTAACA
Found at i:110081023 original size:15 final size:15
Alignment explanation
Indices: 110080999--110081034 Score: 56
Period size: 15 Copynumber: 2.5 Consensus size: 15
110080989 CAATTTTTCC
*
110080999 CTTT-TTCCTTCTTT
1 CTTTCTTCCTTCCTT
110081013 CTTTCTTCCTTCCTT
1 CTTTCTTCCTTCCTT
110081028 CTTTCTT
1 CTTTCTT
110081035 TCCCCCTGCT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
14 4 0.20
15 16 0.80
ACGTcount: A:0.00, C:0.33, G:0.00, T:0.67
Consensus pattern (15 bp):
CTTTCTTCCTTCCTT
Found at i:110092151 original size:40 final size:40
Alignment explanation
Indices: 110092106--110092185 Score: 142
Period size: 40 Copynumber: 2.0 Consensus size: 40
110092096 AACTATTGTA
*
110092106 TGAATGCACATACGTGCCCTTATTTGTACTTCGGTACCCC
1 TGAATGCACATACGTGCCCTTATTTGTACTTCGATACCCC
*
110092146 TGAATGCACATACGTGCCTTTATTTGTACTTCGATACCCC
1 TGAATGCACATACGTGCCCTTATTTGTACTTCGATACCCC
110092186 ATGTATACTT
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
40 38 1.00
ACGTcount: A:0.21, C:0.29, G:0.16, T:0.34
Consensus pattern (40 bp):
TGAATGCACATACGTGCCCTTATTTGTACTTCGATACCCC
Found at i:110092575 original size:21 final size:21
Alignment explanation
Indices: 110092536--110092575 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
110092526 GGACTAAACC
* * *
110092536 GAAAACTTTGGAAAGTTTTGG
1 GAAAACTTAGAAAAATTTTGG
110092557 GAAAACTTAGAAAAATTTT
1 GAAAACTTAGAAAAATTTT
110092576 CATGAAAGAG
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.42, C:0.05, G:0.20, T:0.33
Consensus pattern (21 bp):
GAAAACTTAGAAAAATTTTGG
Found at i:110100815 original size:14 final size:13
Alignment explanation
Indices: 110100796--110100852 Score: 64
Period size: 13 Copynumber: 4.4 Consensus size: 13
110100786 AACAAATGAA
110100796 AAAAATTAGAATAT
1 AAAAATTA-AATAT
110100810 AAAAATTAAATA-
1 AAAAATTAAATAT
*
110100822 ATAAATATAAATAT
1 AAAAAT-TAAATAT
*
110100836 AAATATTAAA-AT
1 AAAAATTAAATAT
110100848 AAAAA
1 AAAAA
110100853 AGGCTAAATT
Statistics
Matches: 37, Mismatches: 4, Indels: 6
0.79 0.09 0.13
Matches are distributed among these distances:
12 11 0.30
13 14 0.38
14 12 0.32
ACGTcount: A:0.70, C:0.00, G:0.02, T:0.28
Consensus pattern (13 bp):
AAAAATTAAATAT
Found at i:110100830 original size:20 final size:19
Alignment explanation
Indices: 110100805--110100852 Score: 62
Period size: 19 Copynumber: 2.5 Consensus size: 19
110100795 AAAAAATTAG
110100805 AATATAAAAATTAAATAATA
1 AATATAAAAA-TAAATAATA
* *
110100825 AATATAAATATAAATATTA
1 AATATAAAAATAAATAATA
110100844 AA-ATAAAAA
1 AATATAAAAA
110100853 AGGCTAAATT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
18 6 0.24
19 10 0.40
20 9 0.36
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (19 bp):
AATATAAAAATAAATAATA
Found at i:110100837 original size:12 final size:13
Alignment explanation
Indices: 110100800--110100850 Score: 61
Period size: 12 Copynumber: 3.9 Consensus size: 13
110100790 AATGAAAAAA
*
110100800 ATTAGAATATAAAA
1 ATTA-AATATAAAT
110100814 ATTAAATAATAAAT
1 ATTAAAT-ATAAAT
110100828 A-TAAATATAAAT
1 ATTAAATATAAAT
110100840 ATTAAA-ATAAA
1 ATTAAATATAAA
110100851 AAAGGCTAAA
Statistics
Matches: 34, Mismatches: 1, Indels: 6
0.83 0.02 0.15
Matches are distributed among these distances:
12 12 0.35
13 12 0.35
14 10 0.29
ACGTcount: A:0.67, C:0.00, G:0.02, T:0.31
Consensus pattern (13 bp):
ATTAAATATAAAT
Found at i:110104012 original size:48 final size:48
Alignment explanation
Indices: 110103942--110104187 Score: 227
Period size: 48 Copynumber: 5.2 Consensus size: 48
110103932 AGATCTCGTA
* * * * *
110103942 TAAGACCATATCTGAGATATGGCATCGGCATCGATGTGAGATCCCATG
1 TAAGACCATGTCTGGGACATGGCATTGGCATCGATATGAGATCCCATG
* * * * *
110103990 TTAGACCATGTCTGGGACATGGCTTTGGTATC-ATTATGTGATCTCATG
1 TAAGACCATGTCTGGGACATGGCATTGGCATCGA-TATGAGATCCCATG
* * *
110104038 TAAGACCATGTCCGGGACATGGCATTGGCATCGATATGAGA-CATCGTG
1 TAAGACCATGTCTGGGACATGGCATTGGCATCGATATGAGATC-CCATG
** * * *
110104086 TAAGACCATACCTGGG-CTATCAGC-TTCG-AT--ATATGTGATCCCATG
1 TAAGACCATGTCTGGGAC-AT-GGCATTGGCATCGATATGAGATCCCATG
* *
110104131 TAAGACCATGTCTGGGACATGGCATTGGCATCGATATGGGGTCCCATG
1 TAAGACCATGTCTGGGACATGGCATTGGCATCGATATGAGATCCCATG
110104179 TAAGACCAT
1 TAAGACCAT
110104188 ATCTCGTATA
Statistics
Matches: 157, Mismatches: 30, Indels: 22
0.75 0.14 0.11
Matches are distributed among these distances:
44 2 0.01
45 29 0.18
46 4 0.03
47 5 0.03
48 114 0.73
49 3 0.02
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.28
Consensus pattern (48 bp):
TAAGACCATGTCTGGGACATGGCATTGGCATCGATATGAGATCCCATG
Found at i:110104101 original size:96 final size:93
Alignment explanation
Indices: 110103933--110104188 Score: 275
Period size: 93 Copynumber: 2.7 Consensus size: 93
110103923 TGGTTGATGA
* * * * * * * *
110103933 GATCTCGTATAAGACCATATCTGAGATATGGCATCGGCATCGATGTGAGATCCCATGTTAGACCA
1 GATCTCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATATGAGATCCCATGTAAGACCA
** * *
110103998 TGTCTGGGAC-AT-GGCTTTGGTATCATTATGT
66 TACCTGGG-CTATCAGC-TTCG-AT-A-TATGT
* * *
110104029 GATCTCATGTAAGACCATGTCCGGGACATGGCATTGGCATCGATATGAGA-CATCGTGTAAGACC
1 GATCTCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATATGAGATC-CCATGTAAGACC
110104093 ATACCTGGGCTATCAGCTTCGATATATGT
65 ATACCTGGGCTATCAGCTTCGATATATGT
* * *
110104122 GATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATATGGGGTCCCATGTAAGACCA
1 GATCTCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATATGAGATCCCATGTAAGACCA
110104187 TA
66 TA
110104189 TCTCGTATAT
Statistics
Matches: 135, Mismatches: 21, Indels: 11
0.81 0.13 0.07
Matches are distributed among these distances:
93 64 0.47
94 2 0.01
95 4 0.03
96 63 0.47
97 2 0.01
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (93 bp):
GATCTCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATATGAGATCCCATGTAAGACCA
TACCTGGGCTATCAGCTTCGATATATGT
Found at i:110106652 original size:22 final size:26
Alignment explanation
Indices: 110106609--110106654 Score: 64
Period size: 22 Copynumber: 1.9 Consensus size: 26
110106599 TGAATGGCTT
110106609 AATGTCATAAGTTTACTAAATTTATC
1 AATGTCATAAGTTTACTAAATTTATC
110106635 AATGT-ATAA-TTT-CT-AATTTA
1 AATGTCATAAGTTTACTAAATTTA
110106655 AAAATGATCA
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
22 6 0.30
23 2 0.10
24 3 0.15
25 4 0.20
26 5 0.25
ACGTcount: A:0.39, C:0.09, G:0.07, T:0.46
Consensus pattern (26 bp):
AATGTCATAAGTTTACTAAATTTATC
Found at i:110114882 original size:16 final size:16
Alignment explanation
Indices: 110114861--110114892 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
110114851 TTAAATTAGA
110114861 CCATATCATGATTCGG
1 CCATATCATGATTCGG
*
110114877 CCATATCGTGATTCGG
1 CCATATCATGATTCGG
110114893 AAAAAGTTTA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.22, C:0.25, G:0.22, T:0.31
Consensus pattern (16 bp):
CCATATCATGATTCGG
Found at i:110115209 original size:14 final size:14
Alignment explanation
Indices: 110115176--110115222 Score: 57
Period size: 14 Copynumber: 3.6 Consensus size: 14
110115166 TTTTATAGAC
110115176 TTTTATTTTT--TA
1 TTTTATTTTTAATA
110115188 TTTT-TTTTTAA-A
1 TTTTATTTTTAATA
110115200 TTATTATTTTTAATA
1 TT-TTATTTTTAATA
110115215 TTTTATTT
1 TTTTATTT
110115223 CAATCGGGTC
Statistics
Matches: 30, Mismatches: 0, Indels: 8
0.79 0.00 0.21
Matches are distributed among these distances:
11 5 0.17
12 7 0.23
13 2 0.07
14 13 0.43
15 3 0.10
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.77
Consensus pattern (14 bp):
TTTTATTTTTAATA
Found at i:110116305 original size:38 final size:38
Alignment explanation
Indices: 110116254--110116332 Score: 158
Period size: 38 Copynumber: 2.1 Consensus size: 38
110116244 GAACATTCAA
110116254 TTCCAAAGATAAATATAGTTTAGTTTCTACTAAAGACT
1 TTCCAAAGATAAATATAGTTTAGTTTCTACTAAAGACT
110116292 TTCCAAAGATAAATATAGTTTAGTTTCTACTAAAGACT
1 TTCCAAAGATAAATATAGTTTAGTTTCTACTAAAGACT
110116330 TTC
1 TTC
110116333 TATTCATATG
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 41 1.00
ACGTcount: A:0.38, C:0.14, G:0.10, T:0.38
Consensus pattern (38 bp):
TTCCAAAGATAAATATAGTTTAGTTTCTACTAAAGACT
Found at i:110121052 original size:25 final size:25
Alignment explanation
Indices: 110121018--110121067 Score: 91
Period size: 25 Copynumber: 2.0 Consensus size: 25
110121008 TACTCATTAT
110121018 GAGATGTGTTAGTTCTATCTCTTAC
1 GAGATGTGTTAGTTCTATCTCTTAC
*
110121043 GAGATGTGTTAGTTCTGTCTCTTAC
1 GAGATGTGTTAGTTCTATCTCTTAC
110121068 TCAATGAGCC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.18, C:0.16, G:0.22, T:0.44
Consensus pattern (25 bp):
GAGATGTGTTAGTTCTATCTCTTAC
Found at i:110123886 original size:18 final size:17
Alignment explanation
Indices: 110123854--110123894 Score: 55
Period size: 18 Copynumber: 2.4 Consensus size: 17
110123844 TTTAAGTTTT
*
110123854 TAATATTTAATATTATG
1 TAATTTTTAATATTATG
*
110123871 TTATTTTTATATATTATG
1 TAATTTTTA-ATATTATG
110123889 TAATTT
1 TAATTT
110123895 AGAATACATT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
17 7 0.35
18 13 0.65
ACGTcount: A:0.34, C:0.00, G:0.05, T:0.61
Consensus pattern (17 bp):
TAATTTTTAATATTATG
Found at i:110126871 original size:21 final size:21
Alignment explanation
Indices: 110126845--110126885 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
110126835 ATCTGCTCAA
* *
110126845 ACTCCACCTGTTTTGGAGTAC
1 ACTCCACCTGCTGTGGAGTAC
110126866 ACTCCACCTGCTGTGGAGTA
1 ACTCCACCTGCTGTGGAGTA
110126886 TTGCTCGTCT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.20, C:0.29, G:0.22, T:0.29
Consensus pattern (21 bp):
ACTCCACCTGCTGTGGAGTAC
Found at i:110140976 original size:15 final size:15
Alignment explanation
Indices: 110140956--110140985 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
110140946 TTTTGTTGGC
110140956 AAGAAAAACAGATAT
1 AAGAAAAACAGATAT
110140971 AAGAAAAACAGATAT
1 AAGAAAAACAGATAT
110140986 CTACCTTGTC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.67, C:0.07, G:0.13, T:0.13
Consensus pattern (15 bp):
AAGAAAAACAGATAT
Found at i:110143129 original size:25 final size:27
Alignment explanation
Indices: 110143080--110143129 Score: 68
Period size: 25 Copynumber: 1.9 Consensus size: 27
110143070 TGTACAGTTA
*
110143080 ATTTTTAATTAATTTGTAAAATAATAT
1 ATTTTTAATTAATCTGTAAAATAATAT
*
110143107 ATTTTTAATT-A-CTGTAAACTAAT
1 ATTTTTAATTAATCTGTAAAATAAT
110143130 CTTCATTATT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
25 10 0.48
26 1 0.05
27 10 0.48
ACGTcount: A:0.42, C:0.04, G:0.04, T:0.50
Consensus pattern (27 bp):
ATTTTTAATTAATCTGTAAAATAATAT
Found at i:110143497 original size:9 final size:9
Alignment explanation
Indices: 110143483--110143508 Score: 52
Period size: 9 Copynumber: 2.9 Consensus size: 9
110143473 AATTTTTTAT
110143483 TTATAAATC
1 TTATAAATC
110143492 TTATAAATC
1 TTATAAATC
110143501 TTATAAAT
1 TTATAAAT
110143509 AAAAGTATTA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 17 1.00
ACGTcount: A:0.46, C:0.08, G:0.00, T:0.46
Consensus pattern (9 bp):
TTATAAATC
Found at i:110147155 original size:26 final size:28
Alignment explanation
Indices: 110147126--110147180 Score: 80
Period size: 27 Copynumber: 2.1 Consensus size: 28
110147116 AACAAAATGT
110147126 AAAAAT-ATATAAA-AGAAAAAAT-TAA
1 AAAAATCATATAAATAGAAAAAATATAA
*
110147151 AAAAATCATATAAATGGAAAAAATATAA
1 AAAAATCATATAAATAGAAAAAATATAA
110147179 AA
1 AA
110147181 GTTATTAAAA
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
25 6 0.23
26 7 0.27
27 8 0.31
28 5 0.19
ACGTcount: A:0.73, C:0.02, G:0.05, T:0.20
Consensus pattern (28 bp):
AAAAATCATATAAATAGAAAAAATATAA
Found at i:110148337 original size:6 final size:6
Alignment explanation
Indices: 110148328--110148456 Score: 116
Period size: 6 Copynumber: 21.5 Consensus size: 6
110148318 ATGAGAATGA
* * * * ** *
110148328 GAGTGT GAGTGA GAGTGA G-GATGT GAGTTT GAGTGA GAGTGT GAACGA
1 GAGTGT GAGTGT GAGTGT GAG-TGT GAGTGT GAGTGT GAGTGT GAGTGT
* ** * *
110148376 GAATAA GAGTGA GAGTGA GAGTGT GAGTGT GAGTGT GAGTGT GAGTGT
1 GAGTGT GAGTGT GAGTGT GAGTGT GAGTGT GAGTGT GAGTGT GAGTGT
* *
110148424 AAGTGT GAGTGT AAGTGT GAGTGT GAGTGT GAG
1 GAGTGT GAGTGT GAGTGT GAGTGT GAGTGT GAG
110148457 CGAGAATGAG
Statistics
Matches: 103, Mismatches: 18, Indels: 4
0.82 0.14 0.03
Matches are distributed among these distances:
5 1 0.01
6 101 0.98
7 1 0.01
ACGTcount: A:0.26, C:0.01, G:0.46, T:0.27
Consensus pattern (6 bp):
GAGTGT
Found at i:110151042 original size:23 final size:23
Alignment explanation
Indices: 110150998--110151043 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
110150988 ATATTACCAT
**
110150998 TATTATTATTATGTATTAGTATA
1 TATTATTATTATGTACGAGTATA
* *
110151021 TATTTTTATTATGTACGGGTATA
1 TATTATTATTATGTACGAGTATA
110151044 CCTATATATA
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.30, C:0.02, G:0.13, T:0.54
Consensus pattern (23 bp):
TATTATTATTATGTACGAGTATA
Found at i:110151311 original size:19 final size:19
Alignment explanation
Indices: 110151276--110151312 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
110151266 ATATATTACC
**
110151276 TAAATATTTTAGTATTATG
1 TAAATATTTTAACATTATG
110151295 TAAATATTTTAACATTAT
1 TAAATATTTTAACATTAT
110151313 ATTATATTTG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.41, C:0.03, G:0.05, T:0.51
Consensus pattern (19 bp):
TAAATATTTTAACATTATG
Found at i:110160483 original size:23 final size:23
Alignment explanation
Indices: 110160457--110160522 Score: 71
Period size: 23 Copynumber: 2.9 Consensus size: 23
110160447 TACTAAACTA
*
110160457 TCAATGATAGTCAGTATAAAGTC
1 TCAATGATAGTCAGTACAAAGTC
* * * *
110160480 TCAATAACAGTTAGTACAGAGTC
1 TCAATGATAGTCAGTACAAAGTC
110160503 TCAATGATAGTC-GATACAAA
1 TCAATGATAGTCAG-TACAAA
110160523 CTCTGGATTC
Statistics
Matches: 33, Mismatches: 9, Indels: 2
0.75 0.20 0.05
Matches are distributed among these distances:
22 1 0.03
23 32 0.97
ACGTcount: A:0.41, C:0.15, G:0.17, T:0.27
Consensus pattern (23 bp):
TCAATGATAGTCAGTACAAAGTC
Found at i:110164460 original size:20 final size:20
Alignment explanation
Indices: 110164422--110164469 Score: 62
Period size: 20 Copynumber: 2.5 Consensus size: 20
110164412 TAAATTCTAA
* **
110164422 AAAGATAAATACATTTAATT
1 AAAGATAAATAAAGATAATT
110164442 AAAGATAAATAAAGATAATT
1 AAAGATAAATAAAGATAATT
110164462 AAA-ATAAA
1 AAAGATAAA
110164470 ATCCTAAAAT
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
19 5 0.20
20 20 0.80
ACGTcount: A:0.65, C:0.02, G:0.06, T:0.27
Consensus pattern (20 bp):
AAAGATAAATAAAGATAATT
Found at i:110164494 original size:27 final size:26
Alignment explanation
Indices: 110164464--110164526 Score: 63
Period size: 27 Copynumber: 2.3 Consensus size: 26
110164454 AGATAATTAA
110164464 AATAAAATCCTAAAATTAAATAATCCT
1 AATAAAATCCTAAAATT-AATAATCCT
* * * *
110164491 AATAATTATCTTAATATTAATTATCCT
1 AATAA-AATCCTAAAATTAATAATCCT
110164518 AATATAAAT
1 AATA-AAAT
110164527 AAAGTGGAGT
Statistics
Matches: 29, Mismatches: 5, Indels: 4
0.76 0.13 0.11
Matches are distributed among these distances:
27 19 0.66
28 10 0.34
ACGTcount: A:0.51, C:0.11, G:0.00, T:0.38
Consensus pattern (26 bp):
AATAAAATCCTAAAATTAATAATCCT
Found at i:110164513 original size:15 final size:15
Alignment explanation
Indices: 110164493--110164522 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
110164483 ATAATCCTAA
*
110164493 TAATTATCTTAATAT
1 TAATTATCCTAATAT
110164508 TAATTATCCTAATAT
1 TAATTATCCTAATAT
110164523 AAATAAAGTG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.40, C:0.10, G:0.00, T:0.50
Consensus pattern (15 bp):
TAATTATCCTAATAT
Found at i:110167933 original size:17 final size:17
Alignment explanation
Indices: 110167887--110167925 Score: 55
Period size: 15 Copynumber: 2.4 Consensus size: 17
110167877 ATATAATTAA
*
110167887 AAATAAAACAAAAT--G
1 AAATAAAATAAAATAAG
110167902 AAATAAAATAAAATAAG
1 AAATAAAATAAAATAAG
110167919 AAATAAA
1 AAATAAA
110167926 TAATAATATA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
15 13 0.62
17 8 0.38
ACGTcount: A:0.77, C:0.03, G:0.05, T:0.15
Consensus pattern (17 bp):
AAATAAAATAAAATAAG
Found at i:110167933 original size:22 final size:22
Alignment explanation
Indices: 110167897--110167938 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
110167887 AAATAAAACA
110167897 AAATGAAATAAAATAAAATAAG
1 AAATGAAATAAAATAAAATAAG
*
110167919 AAAT-AAATAATAATATAATA
1 AAATGAAATAA-AATAAAATA
110167939 TTAATATTAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 6 0.33
22 12 0.67
ACGTcount: A:0.71, C:0.00, G:0.05, T:0.24
Consensus pattern (22 bp):
AAATGAAATAAAATAAAATAAG
Found at i:110174807 original size:16 final size:17
Alignment explanation
Indices: 110174780--110174811 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
110174770 AAAGTAAAAC
110174780 AAAAGAAAACAAAGAAT
1 AAAAGAAAACAAAGAAT
110174797 AAAAG-AAACAAAGAA
1 AAAAGAAAACAAAGAA
110174812 GGAGACGAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 10 0.67
17 5 0.33
ACGTcount: A:0.78, C:0.06, G:0.12, T:0.03
Consensus pattern (17 bp):
AAAAGAAAACAAAGAAT
Found at i:110176666 original size:20 final size:20
Alignment explanation
Indices: 110176624--110176671 Score: 53
Period size: 20 Copynumber: 2.5 Consensus size: 20
110176614 TAAATTCTAA
* ** *
110176624 AAAGATAAATACATTTAATT
1 AAAGATAAATAAAGATAACT
110176644 AAAGATAAATAAAGATAACT
1 AAAGATAAATAAAGATAACT
110176664 AAA-ATAAA
1 AAAGATAAA
110176672 ATCCTAAAAT
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
19 5 0.21
20 19 0.79
ACGTcount: A:0.65, C:0.04, G:0.06, T:0.25
Consensus pattern (20 bp):
AAAGATAAATAAAGATAACT
Found at i:110176696 original size:27 final size:26
Alignment explanation
Indices: 110176666--110176728 Score: 63
Period size: 27 Copynumber: 2.3 Consensus size: 26
110176656 AGATAACTAA
110176666 AATAAAATCCTAAAATTAAATAATCCT
1 AATAAAATCCTAAAATT-AATAATCCT
* * * *
110176693 AATAATTATCTTAATATTAATTATCCT
1 AATAA-AATCCTAAAATTAATAATCCT
110176720 AATATAAAT
1 AATA-AAAT
110176729 AAAATAGAGT
Statistics
Matches: 29, Mismatches: 5, Indels: 4
0.76 0.13 0.11
Matches are distributed among these distances:
27 19 0.66
28 10 0.34
ACGTcount: A:0.51, C:0.11, G:0.00, T:0.38
Consensus pattern (26 bp):
AATAAAATCCTAAAATTAATAATCCT
Found at i:110176715 original size:15 final size:15
Alignment explanation
Indices: 110176695--110176724 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
110176685 ATAATCCTAA
*
110176695 TAATTATCTTAATAT
1 TAATTATCCTAATAT
110176710 TAATTATCCTAATAT
1 TAATTATCCTAATAT
110176725 AAATAAAATA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.40, C:0.10, G:0.00, T:0.50
Consensus pattern (15 bp):
TAATTATCCTAATAT
Found at i:110180174 original size:66 final size:66
Alignment explanation
Indices: 110180063--110180195 Score: 167
Period size: 66 Copynumber: 2.0 Consensus size: 66
110180053 CTCTTTCTAG
* * * * *
110180063 TCATATTACACGGTTTATTCTCTTCATCTTCTCCTTTAAGGGATTCACCTGTCTCGCCACACCTG
1 TCATATTACAAGGTTTATTCTCTCCATCTTCTCCATCAAGGGATTCACCTGCCTCGCCACACCTG
110180128 T
66 T
* * * * * *
110180129 TCATATTACAAGGTTTATTTTCTCCATCTTGTTCATCATGTGATTCACCTGCCTCGCCACACTTG
1 TCATATTACAAGGTTTATTCTCTCCATCTTCTCCATCAAGGGATTCACCTGCCTCGCCACACCTG
110180194 T
66 T
110180195 T
1 T
110180196 TGTTCCTAAC
Statistics
Matches: 56, Mismatches: 11, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
66 56 1.00
ACGTcount: A:0.19, C:0.29, G:0.12, T:0.41
Consensus pattern (66 bp):
TCATATTACAAGGTTTATTCTCTCCATCTTCTCCATCAAGGGATTCACCTGCCTCGCCACACCTG
T
Found at i:110180895 original size:14 final size:14
Alignment explanation
Indices: 110180878--110180911 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
110180868 TCTGTGTACA
*
110180878 AATAACATTGTTAT
1 AATAACATTGCTAT
110180892 AATAACATTGCTAT
1 AATAACATTGCTAT
*
110180906 ATTAAC
1 AATAAC
110180912 GTTTTTAAGT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.44, C:0.12, G:0.06, T:0.38
Consensus pattern (14 bp):
AATAACATTGCTAT
Found at i:110181295 original size:30 final size:30
Alignment explanation
Indices: 110181259--110181371 Score: 140
Period size: 30 Copynumber: 3.8 Consensus size: 30
110181249 TTTTCTCAAA
*
110181259 TAGCCACACCTT-TTCCACCACCAACTCCAC
1 TAGCCACA-CTTGCTCCACCACCAACTCCAC
*
110181289 TAGCCACACCTT-CTCCACCACCAAATCCAC
1 TAGCCACA-CTTGCTCCACCACCAACTCCAC
** *
110181319 TAGCCACACTTGCTCCATTACCTACTCCAC
1 TAGCCACACTTGCTCCACCACCAACTCCAC
*
110181349 TAACCACACTTGCTCCACCACCA
1 TAGCCACACTTGCTCCACCACCA
110181372 CTTGTACCTA
Statistics
Matches: 72, Mismatches: 10, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
29 3 0.04
30 69 0.96
ACGTcount: A:0.27, C:0.48, G:0.04, T:0.20
Consensus pattern (30 bp):
TAGCCACACTTGCTCCACCACCAACTCCAC
Found at i:110181887 original size:23 final size:23
Alignment explanation
Indices: 110181861--110181990 Score: 81
Period size: 23 Copynumber: 5.6 Consensus size: 23
110181851 CTTTTTTTGT
110181861 TATTATTATATTTCTTAATATTA
1 TATTATTATATTTCTTAATATTA
* *
110181884 TATTA-TATATATTCTT-TTAATA
1 TATTATTATAT-TTCTTAATATTA
*
110181906 TATTATGTATATTT-TAAAT-TCTA
1 TATTAT-TATATTTCTTAATAT-TA
* * * *
110181929 TATTACGTATATATATT-ATACTA
1 TATTA-TTATATTTCTTAATATTA
* *
110181952 TTTTATGTATATATCTTTAATATTA
1 TATTAT-TATATTTC-TTAATATTA
110181977 TATTATTTATATTT
1 TATTA-TTATATTT
110181991 TTTTTTACAT
Statistics
Matches: 80, Mismatches: 15, Indels: 22
0.68 0.13 0.19
Matches are distributed among these distances:
22 15 0.19
23 41 0.51
24 8 0.10
25 15 0.19
26 1 0.01
ACGTcount: A:0.35, C:0.05, G:0.02, T:0.58
Consensus pattern (23 bp):
TATTATTATATTTCTTAATATTA
Found at i:110181982 original size:25 final size:25
Alignment explanation
Indices: 110181867--110182077 Score: 124
Period size: 25 Copynumber: 8.7 Consensus size: 25
110181857 TTGTTATTAT
110181867 TATATTTCTTAATATTATATTA--TA
1 TATATTT-TTAATATTATATTATGTA
*
110181891 TATATTCTTT--TAATATATTATG--
1 TATATT-TTTAATATTATATTATGTA
* *
110181913 TATATTTTAAAT-TCTATATTACGTA
1 TATATTTTTAATAT-TATATTATGTA
* * *
110181938 TATA-TATT-ATACTATTTTATGTA
1 TATATTTTTAATATTATATTATGTA
* *
110181961 TATATCTTTAATATTATATTATTTA
1 TATATTTTTAATATTATATTATGTA
* * *
110181986 TATTTTTTTTTACATGTTATCTTATGTA
1 TA--TATTTTTA-ATATTATATTATGTA
* *
110182014 TATA-TCTT-A-ACTATATTATGTA
1 TATATTTTTAATATTATATTATGTA
* *
110182036 TGTATTTTTAACT-CTATATTATGTA
1 TATATTTTTAA-TATTATATTATGTA
*
110182061 CATATTTTTAATATTAT
1 TATATTTTTAATATTAT
110182078 CACGTATTTA
Statistics
Matches: 139, Mismatches: 29, Indels: 37
0.68 0.14 0.18
Matches are distributed among these distances:
21 2 0.01
22 28 0.20
23 28 0.20
24 14 0.10
25 46 0.33
26 1 0.01
27 6 0.04
28 14 0.10
ACGTcount: A:0.33, C:0.06, G:0.04, T:0.57
Consensus pattern (25 bp):
TATATTTTTAATATTATATTATGTA
Found at i:110182254 original size:16 final size:15
Alignment explanation
Indices: 110182230--110182277 Score: 69
Period size: 16 Copynumber: 3.1 Consensus size: 15
110182220 TAATTATTAT
*
110182230 TATTCTAATATTTTGA
1 TATTTTAATATTTT-A
110182246 TATTTTAATATTTTA
1 TATTTTAATATTTTA
110182261 TATTTTATATATTTTA
1 TATTTTA-ATATTTTA
110182277 T
1 T
110182278 TATTCACATC
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
15 8 0.27
16 22 0.73
ACGTcount: A:0.31, C:0.02, G:0.02, T:0.65
Consensus pattern (15 bp):
TATTTTAATATTTTA
Found at i:110182265 original size:7 final size:8
Alignment explanation
Indices: 110182230--110182281 Score: 61
Period size: 8 Copynumber: 6.5 Consensus size: 8
110182220 TAATTATTAT
*
110182230 TATTCTAA
1 TATTTTAA
*
110182238 TATTTTGA
1 TATTTTAA
110182246 TATTTTAA
1 TATTTTAA
110182254 TATTTT-A
1 TATTTTAA
110182261 TATTTTATA
1 TATTTTA-A
*
110182270 TATTTTAT
1 TATTTTAA
110182278 TATT
1 TATT
110182282 CACATCATTA
Statistics
Matches: 38, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
7 7 0.18
8 23 0.61
9 8 0.21
ACGTcount: A:0.31, C:0.02, G:0.02, T:0.65
Consensus pattern (8 bp):
TATTTTAA
Found at i:110192315 original size:73 final size:73
Alignment explanation
Indices: 110192134--110193208 Score: 815
Period size: 73 Copynumber: 13.9 Consensus size: 73
110192124 CTTTTCAAGG
* * * * * *
110192134 AAAATCAACTCATATTGCGAGAGATGAGTTGAGCCTCAAGACACGTTGAGGTACTTTTAATTTTT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCT
*
110192199 GTTTTTC-
66 GTTTGTCA
*
110192206 AAAATCAACTCATATTGCTAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCT
110192271 GTTTGTCA
66 GTTTGTCA
* * *
110192279 AAAATCAACTCATATTGCGAAAGGTGAGTTGAGCCTCGGGACACGTTGAGGTAATTTCAATTTCT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCT
110192344 GTTTGTCA
66 GTTTGTCA
* ** * **
110192352 AAAATTAACTCATATTGCGAGAGGTGAGTTGAGCCTCGACTCACATGCTGAGGTCTTTTCAATTT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-A-GGACACGCTGAGGTAATTTCAATTT
*
110192417 CTGTTCTTCAATTTCTGTTCGT
64 CTG---------TT-TG-TC-A
** * * * * * *
110192439 AAAAAAAAATCA-ACT-C-ATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTT
1 AAAATCAACTCATATTGCGAGA--G-GTGAGTTGAG-----CCTCAGGACACGCTGAGGTA-ATT
* *
110192501 TAAATTTCTGTTTTTCA
57 TCAATTTCTGTTTGTCA
*
110192518 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTAATTTCAATTTCT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCT
110192583 GTTTGTCA
66 GTTTGTCA
* * **
110192591 AAAATTAACTCATATTGCGAGAGGTGAGTTGAGCCTC-GGCTCACATGCTGAGGTCTTTTCAATT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG---ACACGCTGAGGTAATTTCAATT
* *
110192655 TCTGTTCGTAAAAA
63 TCTGTTTGT---CA
* *
110192669 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTTAAATTTC
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTA-ATTTCAATTTC
*
110192734 TGTTTTTCA
65 TGTTTGTCA
* * * *
110192743 AAAATCAACTCATATTGCGATAGGTGAGTTGAGCCTCGGGGCACGCTGAGGT-ATTGTCAATTTT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATT-TCAATTTC
110192807 TGTGTT-TCA
65 TGT-TTGTCA
** * *** * *
110192816 ATTTATGTTTTTCAAAAATCAACTCATATTGTGAGAGGTGAGTTGAGCCTC-GGAACATGCTGAG
1 A---A----AATC--AACTC-A-T-ATTGCGAGAG--GTGAGTTGAGCCTCAGG-ACACGCTGAG
* *
110192880 GTAATTGCAATTTCT-ATTGTCAAA
51 GTAATTTCAATTTCTGTTTGTC--A
* * * * *
110192904 AAAATCAATTCATATTGCAAGAAGTGAGTTGAGCCTC-GGCTCACGTGCTGAGGTATTTTCAATT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG-ACAC--GCTGAGGTAATTTCAA--
110192968 TTTGTTTCTGTTTGTC-
61 ----TTTCTGTTTGTCA
* *
110192984 AAAATCAACTCATATTGCGAGAGGTGCGTTGAGCCTCAGGACATGCTGAGGTAATTTCAATTTCT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCT
*
110193049 GTTTTTCA
66 GTTTGTCA
* * * *
110193057 AAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGG-AATTGTCGATTTT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATT-TC-A-ATT
* *
110193121 TGTGTTTAATTTCAAAAAA
63 TCTG-TT--TGTC-----A
* * * *
110193140 AAAATCAACTCATATTGTGAGAGGTGAATTGAGCCTCAGGACACGCCGAGGTATTTTCAATTTCT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCT
110193205 GTTT
66 GTTT
110193209 TTTTCCAATT
Statistics
Matches: 806, Mismatches: 118, Indels: 152
0.75 0.11 0.14
Matches are distributed among these distances:
72 83 0.10
73 218 0.27
74 90 0.11
75 54 0.07
76 32 0.04
77 16 0.02
78 58 0.07
79 23 0.03
80 44 0.05
81 11 0.01
82 14 0.02
83 54 0.07
84 8 0.01
85 11 0.01
86 9 0.01
87 48 0.06
88 5 0.01
90 11 0.01
91 13 0.02
92 4 0.00
ACGTcount: A:0.28, C:0.17, G:0.22, T:0.33
Consensus pattern (73 bp):
AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCT
GTTTGTCA
Found at i:110192428 original size:14 final size:14
Alignment explanation
Indices: 110192409--110192436 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
110192399 CTGAGGTCTT
110192409 TTCAATTTCTGTTC
1 TTCAATTTCTGTTC
110192423 TTCAATTTCTGTTC
1 TTCAATTTCTGTTC
110192437 GTAAAAAAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.14, C:0.21, G:0.07, T:0.57
Consensus pattern (14 bp):
TTCAATTTCTGTTC
Found at i:110192550 original size:74 final size:73
Alignment explanation
Indices: 110192443--110193210 Score: 682
Period size: 74 Copynumber: 10.0 Consensus size: 73
110192433 GTTCGTAAAA
*
110192443 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTTAAATTT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTA-TTTTCAATTT
110192508 CTGTTTTTC
65 CTGTTTTTC
* *
110192517 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTAATTTCAATTTC
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTC
*
110192582 TGTTTGTC
66 TGTTTTTC
* * *
110192590 AAAAATTAACTCATATTGCGAGAGGTGAGTTGAGCCTC-GGCTCACATGCTGAGGTCTTTTCAAT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG---ACACGCTGAGGTATTTTCAAT
***
110192654 TTCTGTTCGTAAAA
63 TTCTGTT--T-TTC
*
110192668 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTTAAATTT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTA-TTTTCAATTT
110192733 CTGTTTTTC
65 CTGTTTTTC
* * * * *
110192742 AAAAATCAACTCATATTGCGATAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTGTCAATTTT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTC
*
110192807 TGTGTTTC
66 TGTTTTTC
** * *** * *
110192815 AATTTATGTTTTTCAAAAATCAACTCATATTGTGAGAGGTGAGTTGAGCCTC-GGAACATGCTGA
1 AA---A----AATC--AACTC-A-T-ATTGCGAGAG--GTGAGTTGAGCCTCAGG-ACACGCTGA
* * * *
110192879 GGTAATTGCAATTTCT-ATTGTC
51 GGTATTTTCAATTTCTGTTTTTC
* * * *
110192901 AAAAAAATCAATTCATATTGCAAGAAGTGAGTTGAGCCTC-GGCTCACGTGCTGAGGTATTTTCA
1 --AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG-ACAC--GCTGAGGTATTTTCA
*
110192965 ATTTTTGTTTCTGTTTGTC
61 A------TTTCTGTTTTTC
* * *
110192984 -AAAATCAACTCATATTGCGAGAGGTGCGTTGAGCCTCAGGACATGCTGAGGTAATTTCAATTTC
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTC
110193048 TGTTTTTC
66 TGTTTTTC
* * * * * *
110193056 AAAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGAATTGTCGATTTT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTC-A-ATT
*
110193121 TGTGTTTAATTTC
64 TCTG-TT--TTTC
* * *
110193134 AAAAAAAAAATCAACTCATATTGTGAGAGGTGAATTGAGCCTCAGGACACGCCGAGGTATTTTCA
1 -----AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCA
110193199 ATTTCTGTTTTT
61 ATTTCTGTTTTT
110193211 TTCCAATTTC
Statistics
Matches: 563, Mismatches: 85, Indels: 88
0.76 0.12 0.12
Matches are distributed among these distances:
72 13 0.02
73 120 0.21
74 123 0.22
75 31 0.06
76 32 0.06
77 16 0.03
78 60 0.11
79 6 0.01
80 39 0.07
81 9 0.02
82 10 0.02
83 57 0.10
84 1 0.00
85 6 0.01
86 5 0.01
87 33 0.06
88 2 0.00
ACGTcount: A:0.28, C:0.16, G:0.22, T:0.33
Consensus pattern (73 bp):
AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTC
TGTTTTTC
Found at i:110192624 original size:239 final size:230
Alignment explanation
Indices: 110192206--110193210 Score: 1140
Period size: 239 Copynumber: 4.3 Consensus size: 230
110192196 TTTGTTTTTC
* * *
110192206 AAAATCAACTCATATTGCTAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTA-ATTTCAATTTC
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTTAAATTTC
* * *
110192270 TGTTTGTCAAAAATCAACTCATATTGCGAAAGGTGAGTTGAGCCTCGGGACACGTTGAGGTAATT
66 TGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTAATT
*
110192335 TCAATTTCTGTTTGTCAAAAATTAACTCATATTGCGAGAGGTGAGTTGAGCCTCGACTCACATGC
131 TCAATTTCTGTTTGTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGACTCACATGC
110192400 TGAGGTCTTTTCAATTTCTGTTCTTCAATTTCTGTTCGTAAAAA
196 TGAGG-----T-AA--TCTGTT-TTCAATTTCTGTTCGTAAAAA
110192444 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTTAAATTTC
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTTAAATTTC
110192509 TGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTAATT
66 TGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTAATT
* *
110192574 TCAATTTCTGTTTGTCAAAAATTAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGCTCACATGC
131 TCAATTTCTGTTTGTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGACTCACATGC
110192639 TGAGG---TC--TTTTCAATTTCTGTTCGTAAAAA
196 TGAGGTAATCTGTTTTCAATTTCTGTTCGTAAAAA
110192669 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTTAAATTTC
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTTAAATTTC
* *
110192734 TGTTTTTCAAAAATCAACTCATATTGCGATAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTG
66 TGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGA-G----G
* * *
110192799 TCAATTTTTGTGTTTCAATTTATGTTTTTCAAAAATCAACTCATATTGTGAGAGGTGAGTTGAGC
126 T-AA--------TTTCAATTTCTGTTTGTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGC
* *
110192864 CTCGGA---ACATGCTGAGGTAAT-TG----CAATTTCTATT-GT-CAAA
182 CTC-GACTCACATGCTGAGGTAATCTGTTTTCAATTTCTGTTCGTAAAAA
* * * * *
110192904 AAAATCAATTCATATTGCAAGAAGTGAGTTGAGCCTC-GGCTCACGTGCTGAGGTATTTTCAATT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG-ACAC--GCTGAGGTATTTTTAA--
* * * * *
110192968 TTTGTTTCTGTTTGTC-AAAATCAACTCATATTGCGAGAGGTGCGTTGAGCCTCAGGACATGCTG
61 ---ATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTG
* * **
110193032 AGGTAATTTCAATTTCTGTTTTTCAAAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTCGGG
123 AGGTAATTTCAATTTCTGTTTGTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGAC
* * *** * *
110193097 GCAC--GCTGAGG-AATTGTCGATTTTTGTGTTTAAT-TTC-AAAAAA
188 TCACATGCTGAGGTAA-TCT-G--TTTTCAATTT-CTGTTCGTAAAAA
* * * *
110193140 AAAATCAACTCATATTGTGAGAGGTGAATTGAGCCTCAGGACACGCCGAGGTA-TTTTCAATTTC
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTTAAATTTC
110193204 TGTTTTT
66 TGTTTTT
110193211 TTCCAATTTC
Statistics
Matches: 673, Mismatches: 49, Indels: 100
0.82 0.06 0.12
Matches are distributed among these distances:
225 142 0.21
226 6 0.01
227 61 0.09
228 13 0.02
229 3 0.00
230 2 0.00
231 2 0.00
233 4 0.01
234 10 0.01
235 47 0.07
236 43 0.06
237 38 0.06
238 52 0.08
239 192 0.29
240 3 0.00
241 44 0.07
242 11 0.02
ACGTcount: A:0.28, C:0.17, G:0.22, T:0.33
Consensus pattern (230 bp):
AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTTAAATTTC
TGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTAATT
TCAATTTCTGTTTGTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGACTCACATGC
TGAGGTAATCTGTTTTCAATTTCTGTTCGTAAAAA
Found at i:110192878 original size:87 final size:87
Alignment explanation
Indices: 110192728--110192892 Score: 260
Period size: 87 Copynumber: 1.9 Consensus size: 87
110192718 GGTATTTTTA
* * **
110192728 AATTTCTGTTTTTCAAAAATCAACTCATATTGCGATAGGTGAGTTGAGCCTCGGGGCACGCTGAG
1 AATTTATGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGAACACGCTGAG
110192793 GT-ATTGTCAATTTTTGTGTTTC
66 GTAATTG-CAATTTTTGTGTTTC
* *
110192815 AATTTATGTTTTTCAAAAATCAACTCATATTGTGAGAGGTGAGTTGAGCCTCGGAACATGCTGAG
1 AATTTATGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGAACACGCTGAG
110192880 GTAATTGCAATTT
66 GTAATTGCAATTT
110192893 CTATTGTCAA
Statistics
Matches: 71, Mismatches: 6, Indels: 2
0.90 0.08 0.03
Matches are distributed among these distances:
87 67 0.94
88 4 0.06
ACGTcount: A:0.27, C:0.15, G:0.22, T:0.36
Consensus pattern (87 bp):
AATTTATGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGAACACGCTGAG
GTAATTGCAATTTTTGTGTTTC
Found at i:110192909 original size:161 final size:160
Alignment explanation
Indices: 110192668--110193210 Score: 668
Period size: 161 Copynumber: 3.5 Consensus size: 160
110192658 GTTCGTAAAA
* *
110192668 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTTAAATTT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTA-ATTTCAATTT
* *
110192733 CTGTTTTTCAAAAATCAACTCATATTGCGATAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATT
65 CTGTTTTTCAAAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATT
*
110192798 GTCAATTTTTGTGTTTCAATTTATGTTTTTC
130 GTCAATTTTTGTGTTTCAATTTATGTTTATC
* * *
110192829 AAAAATCAACTCATATTGTGAGAGGTGAGTTGAGCCTC-GGAACATGCTGAGGTAATTGCAATTT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG-ACACGCTGAGGTAATTTCAATTT
* * * * **
110192893 CT-ATTGTCAAAAAAATCAATTCATATTGCAAGAAGTGAGTTGAGCCTCGGCTCACGTGCTGAGG
65 CTGTTTTTC--AAAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTCGGGGCAC--GCTGAGG
* *
110192957 TATTTTCAA-TTTT-TGTTTC------TGTTTGTC
126 TATTGTCAATTTTTGTGTTTCAATTTATGTTTATC
* *
110192984 -AAAATCAACTCATATTGCGAGAGGTGCGTTGAGCCTCAGGACATGCTGAGGTAATTTCAATTTC
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTC
*
110193048 TGTTTTTCAAAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGAATTG
66 TGTTTTTCAAAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTG
* * **
110193113 TCGATTTTTGTGTTT-AATTTCA----AAAA
131 TCAATTTTTGTGTTTCAATTT-ATGTTTATC
* * * *
110193139 AAAAATCAACTCATATTGTGAGAGGTGAATTGAGCCTCAGGACACGCCGAGGTATTTTCAATTTC
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTC
110193204 TGTTTTT
66 TGTTTTT
110193211 TTCCAATTTC
Statistics
Matches: 328, Mismatches: 37, Indels: 39
0.81 0.09 0.10
Matches are distributed among these distances:
151 13 0.04
152 4 0.01
153 46 0.14
154 59 0.18
155 13 0.04
156 65 0.20
159 4 0.01
160 11 0.03
161 94 0.29
162 4 0.01
163 15 0.05
ACGTcount: A:0.28, C:0.16, G:0.22, T:0.34
Consensus pattern (160 bp):
AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTC
TGTTTTTCAAAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTG
TCAATTTTTGTGTTTCAATTTATGTTTATC
Found at i:110193219 original size:17 final size:17
Alignment explanation
Indices: 110193193--110193227 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
110193183 CGCCGAGGTA
110193193 TTTTCAATTTCTG-TTT
1 TTTTCAATTTCTGCTTT
110193209 TTTTCCAATTTCTGCTTT
1 TTTT-CAATTTCTGCTTT
110193227 T
1 T
110193228 CAAAATATCA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 4 0.24
17 9 0.53
18 4 0.24
ACGTcount: A:0.11, C:0.17, G:0.06, T:0.66
Consensus pattern (17 bp):
TTTTCAATTTCTGCTTT
Found at i:110193516 original size:77 final size:76
Alignment explanation
Indices: 110193368--110193648 Score: 399
Period size: 77 Copynumber: 3.7 Consensus size: 76
110193358 GAGTTGAGCC
** *
110193368 TTTT-AATTTCTG-TTTTTTAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTTTGCTCAC
1 TTTTCAATTTCTGCTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTTGCTCAC
110193431 GTGCTGAGCTA
66 GTGCTGAGCTA
*
110193442 TTTTCAATTTCTGCTTTTCAAAAGAATCAACTCATATTGTGAGAGGTGAGTTGAGCCTTTGCTCA
1 TTTTCAATTTCTGCTTTTCAAAA-AATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTTGCTCA
110193507 CGTGCTGAGCTA
65 CGTGCTGAGCTA
* * ** *
110193519 TTTTCAATTTCTGTTTTTCAAAAGAATCAACTCATATTGTGAGAGGTGAGTTGAGCCTCGGGTCA
1 TTTTCAATTTCTGCTTTTCAAAA-AATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTTGCTCA
** *
110193584 CACGCTGAGGC-G
65 CGTGCTGA-GCTA
110193596 TTTTCAATTTCTGCTTTTC-AAAAATCAACTCATATTGCGAGAGGTGAGTTGAG
1 TTTTCAATTTCTGCTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAG
110193649 TCTCAGGCCA
Statistics
Matches: 190, Mismatches: 13, Indels: 7
0.90 0.06 0.03
Matches are distributed among these distances:
74 4 0.02
75 38 0.20
76 10 0.05
77 136 0.72
78 2 0.01
ACGTcount: A:0.26, C:0.17, G:0.21, T:0.36
Consensus pattern (76 bp):
TTTTCAATTTCTGCTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTTGCTCAC
GTGCTGAGCTA
Found at i:110193663 original size:77 final size:77
Alignment explanation
Indices: 110193368--110193688 Score: 386
Period size: 77 Copynumber: 4.2 Consensus size: 77
110193358 GAGTTGAGCC
* * *
110193368 TTTT-AATTTCTGTTTTT-TAAA-AATCAACTCATATTGCGAGAAGTGAGTTGAGCCTTTGCTCA
1 TTTTCAATTTCTGTTTTTCAAAAGAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCA
*
110193430 CGTGCTGAGCTA
66 CATGCTGAGCTA
* * *
110193442 TTTTCAATTTCTGCTTTTCAAAAGAATCAACTCATATTGTGAGAGGTGAGTTGAGCCTTTGCTCA
1 TTTTCAATTTCTGTTTTTCAAAAGAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCA
*
110193507 CGTGCTGAGCTA
66 CATGCTGAGCTA
* * *
110193519 TTTTCAATTTCTGTTTTTCAAAAGAATCAACTCATATTGTGAGAGGTGAGTTGAGCCTCGGGTCA
1 TTTTCAATTTCTGTTTTTCAAAAGAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCA
* *
110193584 CACGCTGAGGC-G
66 CATGCTGA-GCTA
* * *
110193596 TTTTCAATTTCTGCTTTTC-AAA-AATCAACTCATATTGCGAGAGGTGAGTTGAGTCTCAGGC-C
1 TTTTCAATTTCTGTTTTTCAAAAGAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT-TGGCTC
** * *
110193658 ACACACTGAGGTC
65 ACATGCTGAGCTA
*
110193671 TTTTCAAATTCTGTTTTT
1 TTTTCAATTTCTGTTTTT
110193689 AATTTCTGCT
Statistics
Matches: 220, Mismatches: 21, Indels: 11
0.87 0.08 0.04
Matches are distributed among these distances:
74 5 0.02
75 69 0.31
76 8 0.04
77 136 0.62
78 2 0.01
ACGTcount: A:0.25, C:0.18, G:0.20, T:0.37
Consensus pattern (77 bp):
TTTTCAATTTCTGTTTTTCAAAAGAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCA
CATGCTGAGCTA
Found at i:110193683 original size:152 final size:152
Alignment explanation
Indices: 110193362--110193690 Score: 409
Period size: 152 Copynumber: 2.2 Consensus size: 152
110193352 AGAGGTGAGT
* **
110193362 TGAGC-CTTTT-AATTTCTGTTTTTTAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTTT
1 TGAGCTCTTTTCAATTTCTGTTTTTAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCG
** *
110193425 GCTCACGTGCTGAGCTATTTTCAATTTCTGCTTTTCAAAAGAATCAACTCATATTGTGAGAGGTG
66 GCTCACACGCTGAGCTATTTTCAATTTCTGCTTTTCAAAAGAATCAACTCATATTGCGAGAGGTG
** ***
110193490 AGTTGAGCCTTTGCTCACGTGC
131 AGTTGAGCCTAGGCTCACACAC
* * *
110193512 TGAGCTATTTTCAATTTCTGTTTTTCAAAAGAATCAACTCATATTGTGAGAGGTGAGTTGAGCCT
1 TGAGCTCTTTTCAATTTCTGTTTTT-AAAA-AATCAACTCATATTGCGAGAAGTGAGTTGAGCCT
* *
110193577 CGGGTCACACGCTGAGGC-GTTTTCAATTTCTGCTTTTC-AAA-AATCAACTCATATTGCGAGAG
64 CGGCTCACACGCTGA-GCTATTTTCAATTTCTGCTTTTCAAAAGAATCAACTCATATTGCGAGAG
*
110193639 GTGAGTTGAGTCTCAGGC-CACACAC
128 GTGAGTTGAGCCT-AGGCTCACACAC
* *
110193664 TGAGGTCTTTTCAAATTCTGTTTTTAA
1 TGAGCTCTTTTCAATTTCTGTTTTTAA
110193691 TTTCTGCTTT
Statistics
Matches: 153, Mismatches: 20, Indels: 11
0.83 0.11 0.06
Matches are distributed among these distances:
150 5 0.03
151 6 0.04
152 71 0.46
153 8 0.05
154 61 0.40
155 2 0.01
ACGTcount: A:0.25, C:0.18, G:0.20, T:0.36
Consensus pattern (152 bp):
TGAGCTCTTTTCAATTTCTGTTTTTAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCG
GCTCACACGCTGAGCTATTTTCAATTTCTGCTTTTCAAAAGAATCAACTCATATTGCGAGAGGTG
AGTTGAGCCTAGGCTCACACAC
Found at i:110193701 original size:14 final size:13
Alignment explanation
Indices: 110193679--110193715 Score: 56
Period size: 14 Copynumber: 2.8 Consensus size: 13
110193669 TCTTTTCAAA
110193679 TTCTGTTTTTAAT
1 TTCTGTTTTTAAT
*
110193692 TTCTGCTTTTGAAT
1 TTCTG-TTTTTAAT
110193706 TTCTGTTTTT
1 TTCTGTTTTT
110193716 TCAATTTATA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
13 9 0.43
14 12 0.57
ACGTcount: A:0.11, C:0.11, G:0.11, T:0.68
Consensus pattern (13 bp):
TTCTGTTTTTAAT
Found at i:110194517 original size:30 final size:30
Alignment explanation
Indices: 110194481--110194581 Score: 166
Period size: 30 Copynumber: 3.4 Consensus size: 30
110194471 ACTTTTCTCA
*
110194481 ACTAGCCACACCTTTTCCACCACTAACTCC
1 ACTAGCCACACCTTTTCCACCACCAACTCC
*
110194511 ACTAGCCACTCCTTTTCCACCACCAACTCC
1 ACTAGCCACACCTTTTCCACCACCAACTCC
* *
110194541 ACTAGCCACACCTTCTCCACCACCAAATCC
1 ACTAGCCACACCTTTTCCACCACCAACTCC
110194571 ACTAGCCACAC
1 ACTAGCCACAC
110194582 TTGCTCCATT
Statistics
Matches: 66, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 66 1.00
ACGTcount: A:0.28, C:0.49, G:0.04, T:0.20
Consensus pattern (30 bp):
ACTAGCCACACCTTTTCCACCACCAACTCC
Found at i:110194589 original size:30 final size:29
Alignment explanation
Indices: 110194481--110194625 Score: 155
Period size: 30 Copynumber: 4.8 Consensus size: 29
110194471 ACTTTTCTCA
* *
110194481 ACTAGCCACACCTTTTCCACCACTAACTCC
1 ACTAGCCACA-CTTCTCCACCACCAACTCC
* *
110194511 ACTAGCCACTCCTTTTCCACCACCAACTCC
1 ACTAGCCAC-ACTTCTCCACCACCAACTCC
*
110194541 ACTAGCCACACCTTCTCCACCACCAAATCC
1 ACTAGCCACA-CTTCTCCACCACCAACTCC
** *
110194571 ACTAGCCACACTTGCTCCATTACCTACTCC
1 ACTAGCCACACTT-CTCCACCACCAACTCC
* *
110194601 ACTAACCACACTTGCTTCACCACCA
1 ACTAGCCACACTT-CTCCACCACCA
110194626 CTTGTACCTG
Statistics
Matches: 98, Mismatches: 14, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
29 3 0.03
30 95 0.97
ACGTcount: A:0.27, C:0.47, G:0.04, T:0.22
Consensus pattern (29 bp):
ACTAGCCACACTTCTCCACCACCAACTCC
Found at i:110195145 original size:23 final size:23
Alignment explanation
Indices: 110195108--110195235 Score: 70
Period size: 23 Copynumber: 5.5 Consensus size: 23
110195098 CTTTTTTTGT
110195108 TATTAT-TATATTTCTTAATATTA
1 TATTATATATA-TTCTTAATATTA
* *
110195131 TATTATATATATTCTT-TTAATA
1 TATTATATATATTCTTAATATTA
**
110195153 TATTAGGTATATT-TTAA-ATTCTA
1 TATTATATATATTCTTAATA-T-TA
* *
110195176 TATTACGTATATA-TATT-ATACTA
1 TATTA--TATATATTCTTAATATTA
* *
110195199 TTTTATGTATATATCTTTAATATTA
1 TATTATATATAT-TC-TTAATATTA
*
110195224 TATTATTTATAT
1 TATTATATATAT
110195236 ATTTTTTTTA
Statistics
Matches: 78, Mismatches: 15, Indels: 22
0.68 0.13 0.19
Matches are distributed among these distances:
21 8 0.10
22 15 0.19
23 25 0.32
24 8 0.10
25 22 0.28
ACGTcount: A:0.35, C:0.05, G:0.03, T:0.57
Consensus pattern (23 bp):
TATTATATATATTCTTAATATTA
Found at i:110195188 original size:25 final size:24
Alignment explanation
Indices: 110195151--110195316 Score: 92
Period size: 23 Copynumber: 6.8 Consensus size: 24
110195141 ATTCTTTTAA
* *
110195151 TATATTAGGTATAT-TTTAAATTC
1 TATATTATGTATATATTTTAATTC
* * *
110195174 TATATTACGTATATATATT-ATAC
1 TATATTATGTATATATTTTAATTC
*
110195197 TATTTTATGTATATATCTTTAATAT-
1 TATATTATGTATATAT-TTTAAT-TC
*
110195222 TATATTATTTATATATTTTTTTTACATGT-
1 TATATTATGTATATA----TTTTA-AT-TC
* *
110195251 TATCTTATGTATATATCTTAA--C
1 TATATTATGTATATATTTTAATTC
* **
110195273 TATATTATGTATGTATTTTTAACAC
1 TATATTATGTATATA-TTTTAATTC
*
110195298 TATATTATGTACATATTTT
1 TATATTATGTATATATTTT
110195317 TAATATTATC
Statistics
Matches: 111, Mismatches: 19, Indels: 25
0.72 0.12 0.16
Matches are distributed among these distances:
22 13 0.12
23 35 0.32
24 9 0.08
25 33 0.30
28 4 0.04
29 17 0.15
ACGTcount: A:0.33, C:0.07, G:0.05, T:0.55
Consensus pattern (24 bp):
TATATTATGTATATATTTTAATTC
Found at i:110195280 original size:22 final size:24
Alignment explanation
Indices: 110195255--110195313 Score: 68
Period size: 25 Copynumber: 2.5 Consensus size: 24
110195245 ACATGTTATC
110195255 TTATGTATATATCTT-A-ACTATA
1 TTATGTATATATCTTAACACTATA
* *
110195277 TTATGTATGTATTTTTAACACTATA
1 TTATGTATATA-TCTTAACACTATA
*
110195302 TTATGTACATAT
1 TTATGTATATAT
110195314 TTTTAATATT
Statistics
Matches: 30, Mismatches: 4, Indels: 4
0.79 0.11 0.11
Matches are distributed among these distances:
22 10 0.33
23 3 0.10
24 2 0.07
25 15 0.50
ACGTcount: A:0.34, C:0.08, G:0.07, T:0.51
Consensus pattern (24 bp):
TTATGTATATATCTTAACACTATA
Found at i:110195317 original size:25 final size:25
Alignment explanation
Indices: 110195271--110195319 Score: 80
Period size: 25 Copynumber: 2.0 Consensus size: 25
110195261 ATATATCTTA
**
110195271 ACTATATTATGTATGTATTTTTAAC
1 ACTATATTATGTACATATTTTTAAC
110195296 ACTATATTATGTACATATTTTTAA
1 ACTATATTATGTACATATTTTTAA
110195320 TATTATCACG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.35, C:0.08, G:0.06, T:0.51
Consensus pattern (25 bp):
ACTATATTATGTACATATTTTTAAC
Found at i:110195506 original size:16 final size:16
Alignment explanation
Indices: 110195467--110195507 Score: 57
Period size: 16 Copynumber: 2.6 Consensus size: 16
110195457 ATATTAATTA
110195467 TTATTATTCTAATATT
1 TTATTATTCTAATATT
*
110195483 TTGA-TATTTTAATATT
1 TT-ATTATTCTAATATT
110195499 TTATTATTC
1 TTATTATTC
110195508 ACATCATTAT
Statistics
Matches: 21, Mismatches: 2, Indels: 4
0.78 0.07 0.15
Matches are distributed among these distances:
15 1 0.05
16 19 0.90
17 1 0.05
ACGTcount: A:0.29, C:0.05, G:0.02, T:0.63
Consensus pattern (16 bp):
TTATTATTCTAATATT
Found at i:110196241 original size:22 final size:22
Alignment explanation
Indices: 110196184--110196242 Score: 64
Period size: 22 Copynumber: 2.7 Consensus size: 22
110196174 ATATTCAAAT
* *
110196184 AATAACAACAAAATAGTAGCAA
1 AATAATAATAAAATAGTAGCAA
* *
110196206 CATAATAATGAAATAGTAGCAA
1 AATAATAATAAAATAGTAGCAA
**
110196228 AATAATGTTAAAATA
1 AATAATAATAAAATA
110196243 ACAAGAAAAT
Statistics
Matches: 29, Mismatches: 8, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
22 29 1.00
ACGTcount: A:0.59, C:0.08, G:0.10, T:0.22
Consensus pattern (22 bp):
AATAATAATAAAATAGTAGCAA
Found at i:110197267 original size:9 final size:9
Alignment explanation
Indices: 110197255--110197367 Score: 51
Period size: 9 Copynumber: 12.9 Consensus size: 9
110197245 TATAAATGGA
110197255 AAAAATATT
1 AAAAATATT
*
110197264 -AAAATTTT
1 AAAAATATT
*
110197272 AAAAATTTT
1 AAAAATATT
*
110197281 ATAAAGTATT
1 A-AAAATATT
110197291 --AAA-ATT
1 AAAAATATT
110197297 -AAAAT-TT
1 AAAAATATT
*
110197304 AAAACTA-T
1 AAAAATATT
*
110197312 AAAAATTATG
1 AAAAA-TATT
* *
110197322 AAAATTGTT
1 AAAAATATT
* *
110197331 TAAAATATA
1 AAAAATATT
110197340 AAAAATTATT
1 AAAAA-TATT
*
110197350 TAAAATATT
1 AAAAATATT
110197359 ATAAAATAT
1 A-AAAATAT
110197368 GGAAAAGTGA
Statistics
Matches: 76, Mismatches: 18, Indels: 19
0.67 0.16 0.17
Matches are distributed among these distances:
6 3 0.04
7 7 0.09
8 16 0.21
9 26 0.34
10 24 0.32
ACGTcount: A:0.58, C:0.01, G:0.03, T:0.38
Consensus pattern (9 bp):
AAAAATATT
Found at i:110197319 original size:22 final size:24
Alignment explanation
Indices: 110197273--110197319 Score: 62
Period size: 22 Copynumber: 2.0 Consensus size: 24
110197263 TAAAATTTTA
* *
110197273 AAAATTTTATAAAGTATTAAAATT
1 AAAATTTTATAAACTATAAAAATT
110197297 AAAA-TTTA-AAACTATAAAAATT
1 AAAATTTTATAAACTATAAAAATT
110197319 A
1 A
110197320 TGAAAATTGT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
22 13 0.62
23 4 0.19
24 4 0.19
ACGTcount: A:0.60, C:0.02, G:0.02, T:0.36
Consensus pattern (24 bp):
AAAATTTTATAAACTATAAAAATT
Found at i:110198121 original size:9 final size:9
Alignment explanation
Indices: 110198018--110198124 Score: 52
Period size: 9 Copynumber: 11.0 Consensus size: 9
110198008 TAGTTTGCCC
110198018 TTATAAAAA
1 TTATAAAAA
*
110198027 TTATACAACA
1 TTATA-AAAA
** *
110198037 TCGTAACAA
1 TTATAAAAA
110198046 TTATGAAAAA
1 TTAT-AAAAA
** *
110198056 AAATGAAAA
1 TTATAAAAA
110198065 TTATAGAAAA
1 TTATA-AAAA
110198075 TTATTAATAAAA
1 TTA-T-A-AAAA
110198087 TTAATAAAATA
1 TT-ATAAAA-A
*
110198098 CTATAAAAA
1 TTATAAAAA
**
110198107 GCATAAAAA
1 TTATAAAAA
110198116 TTATAAAAA
1 TTATAAAAA
110198125 CAAATTAAAA
Statistics
Matches: 71, Mismatches: 20, Indels: 14
0.68 0.19 0.13
Matches are distributed among these distances:
9 30 0.42
10 28 0.39
11 4 0.06
12 8 0.11
13 1 0.01
ACGTcount: A:0.62, C:0.06, G:0.05, T:0.28
Consensus pattern (9 bp):
TTATAAAAA
Found at i:110208039 original size:22 final size:23
Alignment explanation
Indices: 110208014--110208064 Score: 59
Period size: 22 Copynumber: 2.3 Consensus size: 23
110208004 AATTGAAGTT
*
110208014 GAAATTTTAAATTC-GAAAAATA
1 GAAATATTAAATTCTGAAAAATA
* *
110208036 GAAAAATTAAATTCTTAAAAATA
1 GAAATATTAAATTCTGAAAAATA
*
110208059 AAAATA
1 GAAATA
110208065 AAAAAACTAA
Statistics
Matches: 23, Mismatches: 5, Indels: 1
0.79 0.17 0.03
Matches are distributed among these distances:
22 12 0.52
23 11 0.48
ACGTcount: A:0.61, C:0.04, G:0.06, T:0.29
Consensus pattern (23 bp):
GAAATATTAAATTCTGAAAAATA
Found at i:110209110 original size:10 final size:10
Alignment explanation
Indices: 110209095--110209120 Score: 52
Period size: 10 Copynumber: 2.6 Consensus size: 10
110209085 GATCATGAAT
110209095 AAAATTTATC
1 AAAATTTATC
110209105 AAAATTTATC
1 AAAATTTATC
110209115 AAAATT
1 AAAATT
110209121 ATAAATTTAC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 16 1.00
ACGTcount: A:0.54, C:0.08, G:0.00, T:0.38
Consensus pattern (10 bp):
AAAATTTATC
Found at i:110209128 original size:17 final size:17
Alignment explanation
Indices: 110209106--110209163 Score: 55
Period size: 17 Copynumber: 3.4 Consensus size: 17
110209096 AAATTTATCA
110209106 AAATTTATCAAAATTAT
1 AAATTTATCAAAATTAT
* * *
110209123 AAATTTA-CTGAATTTTT
1 AAATTTATC-AAAATTAT
* *
110209140 GAATTTATCAAAATAAT
1 AAATTTATCAAAATTAT
110209157 AAATTTA
1 AAATTTA
110209164 CATATAAATT
Statistics
Matches: 30, Mismatches: 9, Indels: 4
0.70 0.21 0.09
Matches are distributed among these distances:
16 1 0.03
17 28 0.93
18 1 0.03
ACGTcount: A:0.48, C:0.05, G:0.03, T:0.43
Consensus pattern (17 bp):
AAATTTATCAAAATTAT
Found at i:110212104 original size:30 final size:27
Alignment explanation
Indices: 110212070--110212125 Score: 67
Period size: 29 Copynumber: 2.0 Consensus size: 27
110212060 TTTATTTACA
110212070 ATTTATGCCCTTAATTTCATTTAAATTTCG
1 ATTTA-GCCCTTAATTT-ATTT-AATTTCG
* *
110212100 ATTTAGTCCTTTATTTATTTAATTTC
1 ATTTAGCCCTTAATTTATTTAATTTC
110212126 AACCTTTTAT
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
27 6 0.25
28 4 0.17
29 9 0.38
30 5 0.21
ACGTcount: A:0.25, C:0.14, G:0.05, T:0.55
Consensus pattern (27 bp):
ATTTAGCCCTTAATTTATTTAATTTCG
Found at i:110215251 original size:2 final size:2
Alignment explanation
Indices: 110215246--110215278 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
110215236 CCATATTCTA
110215246 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC A
1 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC A
110215279 TATATATATA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.52, C:0.48, G:0.00, T:0.00
Consensus pattern (2 bp):
AC
Found at i:110215934 original size:22 final size:24
Alignment explanation
Indices: 110215909--110215953 Score: 58
Period size: 22 Copynumber: 2.0 Consensus size: 24
110215899 TATAGTATTG
110215909 TTATCACTATTATT-T-TTATATA
1 TTATCACTATTATTGTATTATATA
* *
110215931 TTATTATTATTATTGTATTATAT
1 TTATCACTATTATTGTATTATAT
110215954 TTAGCTATAT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
22 12 0.63
23 1 0.05
24 6 0.32
ACGTcount: A:0.31, C:0.04, G:0.02, T:0.62
Consensus pattern (24 bp):
TTATCACTATTATTGTATTATATA
Found at i:110216355 original size:18 final size:20
Alignment explanation
Indices: 110216334--110216371 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
110216324 TTCACTATAC
110216334 GTATAT-ATA-TATTTTTGT
1 GTATATGATATTATTTTTGT
*
110216352 GTATATGGTATTATTTTTGT
1 GTATATGATATTATTTTTGT
110216372 ATACTTCATT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
18 6 0.35
19 2 0.12
20 9 0.53
ACGTcount: A:0.24, C:0.00, G:0.16, T:0.61
Consensus pattern (20 bp):
GTATATGATATTATTTTTGT
Found at i:110221997 original size:9 final size:9
Alignment explanation
Indices: 110221985--110222009 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
110221975 TGAAATAAAA
110221985 TATTAAATT
1 TATTAAATT
110221994 TATTAAATT
1 TATTAAATT
110222003 TATTAAA
1 TATTAAA
110222010 AAAAAACCTA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (9 bp):
TATTAAATT
Found at i:110222309 original size:13 final size:14
Alignment explanation
Indices: 110222278--110222311 Score: 54
Period size: 13 Copynumber: 2.6 Consensus size: 14
110222268 ATTATCCCTT
110222278 CTTTTATTCATCTC
1 CTTTTATTCATCTC
110222292 C-TTTATTCAT-TC
1 CTTTTATTCATCTC
110222304 CTTTTATT
1 CTTTTATT
110222312 TCCTTCATTC
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
12 3 0.16
13 15 0.79
14 1 0.05
ACGTcount: A:0.15, C:0.24, G:0.00, T:0.62
Consensus pattern (14 bp):
CTTTTATTCATCTC
Found at i:110228043 original size:19 final size:19
Alignment explanation
Indices: 110228016--110228061 Score: 74
Period size: 19 Copynumber: 2.4 Consensus size: 19
110228006 TTGCTTTGTT
*
110228016 TAAGATTTGTTTGAGTTTG
1 TAAGATTTGTTTGAGTGTG
*
110228035 TATGATTTGTTTGAGTGTG
1 TAAGATTTGTTTGAGTGTG
110228054 TAAGATTT
1 TAAGATTT
110228062 AATTTTCAAT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 24 1.00
ACGTcount: A:0.22, C:0.00, G:0.26, T:0.52
Consensus pattern (19 bp):
TAAGATTTGTTTGAGTGTG
Found at i:110233626 original size:3 final size:3
Alignment explanation
Indices: 110233620--110233648 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
110233610 AATAATAATA
110233620 ATG ATG ATG ATG ATG ATG ATG ATG ATG AT
1 ATG ATG ATG ATG ATG ATG ATG ATG ATG AT
110233649 AGAAGTTGAC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.34, C:0.00, G:0.31, T:0.34
Consensus pattern (3 bp):
ATG
Found at i:110243564 original size:21 final size:22
Alignment explanation
Indices: 110243540--110243580 Score: 66
Period size: 21 Copynumber: 1.9 Consensus size: 22
110243530 CAAATTATTT
*
110243540 TTTATAATAT-TTTTTTAAAGA
1 TTTATAATATAATTTTTAAAGA
110243561 TTTATAATATAATTTTTAAA
1 TTTATAATATAATTTTTAAA
110243581 AAAAATTATA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 10 0.56
22 8 0.44
ACGTcount: A:0.41, C:0.00, G:0.02, T:0.56
Consensus pattern (22 bp):
TTTATAATATAATTTTTAAAGA
Found at i:110244977 original size:75 final size:74
Alignment explanation
Indices: 110244898--110245064 Score: 219
Period size: 75 Copynumber: 2.2 Consensus size: 74
110244888 TCATTCGTTC
** * * *
110244898 GACTAGTGCTGGGCACATTACTATAATTGTCGGTTTATCCAATTAGTGATGGGCAT-AACTTCTG
1 GACTAGTGCTGGGCACATTACTATAATTGTCAATTCATCCAACTAGTGAT-AG-ATCAACTTCTG
110244962 TCAATTTATCT
64 TCAATTTATCT
* *
110244973 GACTAGTGCTAGGCACATTACTATAATTGTCAATTCATCCAACTAGTGCTAGATGCAACTTCTGT
1 GACTAGTGCTGGGCACATTACTATAATTGTCAATTCATCCAACTAGTGATAGAT-CAACTTCTGT
* *
110245038 CAGTTTATTT
65 CAATTTATCT
110245048 GACTAGTGCTGGGCACA
1 GACTAGTGCTGGGCACA
110245065 GTCTCTATAT
Statistics
Matches: 80, Mismatches: 10, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
73 2 0.03
74 1 0.01
75 77 0.96
ACGTcount: A:0.26, C:0.19, G:0.20, T:0.35
Consensus pattern (74 bp):
GACTAGTGCTGGGCACATTACTATAATTGTCAATTCATCCAACTAGTGATAGATCAACTTCTGTC
AATTTATCT
Found at i:110247132 original size:19 final size:19
Alignment explanation
Indices: 110247104--110247167 Score: 67
Period size: 19 Copynumber: 3.4 Consensus size: 19
110247094 TTCATTTTAC
*
110247104 TTTTTATAAATTATATATT
1 TTTTTCTAAATTATATATT
* *
110247123 TTTTTCTAAATTTTATATA
1 TTTTTCTAAATTATATATT
*
110247142 TATTT-TAAATTATATTATT
1 TTTTTCTAAATTATA-TATT
*
110247161 TGTTTCT
1 TTTTTCT
110247168 TTTTTTATAT
Statistics
Matches: 36, Mismatches: 7, Indels: 3
0.78 0.15 0.07
Matches are distributed among these distances:
18 8 0.22
19 27 0.75
20 1 0.03
ACGTcount: A:0.31, C:0.03, G:0.02, T:0.64
Consensus pattern (19 bp):
TTTTTCTAAATTATATATT
Found at i:110248431 original size:5 final size:5
Alignment explanation
Indices: 110248421--110248446 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
110248411 GTGAGTGAGC
110248421 AGAAG AGAAG AGAAG AGAAG AGAAG A
1 AGAAG AGAAG AGAAG AGAAG AGAAG A
110248447 ATAATGGAGG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.62, C:0.00, G:0.38, T:0.00
Consensus pattern (5 bp):
AGAAG
Found at i:110250054 original size:18 final size:19
Alignment explanation
Indices: 110250019--110250054 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
110250009 CTTTTAAATT
*
110250019 AGCAATTGTTTACTTGCAG
1 AGCAATTGTTTACATGCAG
110250038 AGCAATTG-TTACATGCA
1 AGCAATTGTTTACATGCA
110250055 TGAATTTTAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 8 0.50
19 8 0.50
ACGTcount: A:0.31, C:0.17, G:0.19, T:0.33
Consensus pattern (19 bp):
AGCAATTGTTTACATGCAG
Found at i:110260686 original size:23 final size:22
Alignment explanation
Indices: 110260631--110260686 Score: 58
Period size: 23 Copynumber: 2.5 Consensus size: 22
110260621 CTAAAATTAT
* * *
110260631 AAAAATTAAATTTAATACTTTA
1 AAAAATTAAATATAAGACTATA
*
110260653 AAAATTATAAATATATAGACTATA
1 AAAAAT-TAAATATA-AGACTATA
110260677 AAAAATTAAA
1 AAAAATTAAA
110260687 ATTTTATTCG
Statistics
Matches: 27, Mismatches: 5, Indels: 3
0.77 0.14 0.09
Matches are distributed among these distances:
22 5 0.19
23 11 0.41
24 11 0.41
ACGTcount: A:0.61, C:0.04, G:0.02, T:0.34
Consensus pattern (22 bp):
AAAAATTAAATATAAGACTATA
Found at i:110267086 original size:15 final size:15
Alignment explanation
Indices: 110267053--110267086 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
110267043 AGTTATGTCT
*
110267053 ATGTATGGAATTATA
1 ATGTATGGAATTAGA
*
110267068 ATGTATGGAATTAGC
1 ATGTATGGAATTAGA
110267083 ATGT
1 ATGT
110267087 CAAAAAGATC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.35, C:0.03, G:0.24, T:0.38
Consensus pattern (15 bp):
ATGTATGGAATTAGA
Found at i:110269647 original size:21 final size:20
Alignment explanation
Indices: 110269593--110269647 Score: 56
Period size: 22 Copynumber: 2.6 Consensus size: 20
110269583 CCGGGCCCAG
110269593 AAATAAGTCCAAAAACAAAA
1 AAATAAGTCCAAAAACAAAA
** *
110269613 ATAATAAACCCCAAAAAGAAAA
1 A-AAT-AAGTCCAAAAACAAAA
110269635 AAATGAAGTCCAA
1 AAAT-AAGTCCAA
110269648 GTTCAGTCCA
Statistics
Matches: 27, Mismatches: 6, Indels: 3
0.75 0.17 0.08
Matches are distributed among these distances:
20 1 0.04
21 12 0.44
22 14 0.52
ACGTcount: A:0.65, C:0.16, G:0.07, T:0.11
Consensus pattern (20 bp):
AAATAAGTCCAAAAACAAAA
Found at i:110269770 original size:17 final size:18
Alignment explanation
Indices: 110269748--110269817 Score: 56
Period size: 17 Copynumber: 3.9 Consensus size: 18
110269738 ATGGAAATAT
110269748 AATCTTCA-ATGATATGC
1 AATCTTCATATGATATGC
* *
110269765 AATCTTTGATGTGATATGC
1 AATC-TTCATATGATATGC
*
110269784 AATCTTAGATATGATA--C
1 AATCTT-CATATGATATGC
*
110269801 AATCTTAGATATGATAT
1 AATCTT-CATATGATAT
110269818 ATAATCTTAG
Statistics
Matches: 46, Mismatches: 3, Indels: 7
0.82 0.05 0.12
Matches are distributed among these distances:
17 21 0.46
18 5 0.11
19 20 0.43
ACGTcount: A:0.36, C:0.11, G:0.14, T:0.39
Consensus pattern (18 bp):
AATCTTCATATGATATGC
Found at i:110269781 original size:19 final size:19
Alignment explanation
Indices: 110269756--110269828 Score: 96
Period size: 19 Copynumber: 3.9 Consensus size: 19
110269746 ATAATCTTCA
*
110269756 ATGATATGCAATCTTTGAT
1 ATGATATGCAATCTTAGAT
*
110269775 GTGATATGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
110269794 ATGATA--CAATCTTAGAT
1 ATGATATGCAATCTTAGAT
**
110269811 ATGATATATAATCTTAGA
1 ATGATATGCAATCTTAGA
110269829 AGATATGATT
Statistics
Matches: 48, Mismatches: 4, Indels: 4
0.86 0.07 0.07
Matches are distributed among these distances:
17 17 0.35
19 31 0.65
ACGTcount: A:0.37, C:0.10, G:0.15, T:0.38
Consensus pattern (19 bp):
ATGATATGCAATCTTAGAT
Found at i:110269817 original size:22 final size:18
Alignment explanation
Indices: 110269790--110269837 Score: 53
Period size: 19 Copynumber: 2.5 Consensus size: 18
110269780 ATGCAATCTT
110269790 AGATATGATACAATCTTAGA
1 AGATATGAT--AATCTTAGA
110269810 TATGATAT-ATAATCTTAGA
1 -A-GATATGATAATCTTAGA
110269829 AGATATGAT
1 AGATATGAT
110269838 TTTGTAATCT
Statistics
Matches: 25, Mismatches: 0, Indels: 7
0.78 0.00 0.22
Matches are distributed among these distances:
17 5 0.20
18 3 0.12
19 9 0.36
21 3 0.12
22 5 0.20
ACGTcount: A:0.44, C:0.06, G:0.15, T:0.35
Consensus pattern (18 bp):
AGATATGATAATCTTAGA
Found at i:110275590 original size:10 final size:10
Alignment explanation
Indices: 110275575--110275602 Score: 56
Period size: 10 Copynumber: 2.8 Consensus size: 10
110275565 TTCTATTTCA
110275575 AAAAAAAGGG
1 AAAAAAAGGG
110275585 AAAAAAAGGG
1 AAAAAAAGGG
110275595 AAAAAAAG
1 AAAAAAAG
110275603 AAAAAAGAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 18 1.00
ACGTcount: A:0.75, C:0.00, G:0.25, T:0.00
Consensus pattern (10 bp):
AAAAAAAGGG
Found at i:110275606 original size:7 final size:7
Alignment explanation
Indices: 110275596--110275650 Score: 83
Period size: 7 Copynumber: 7.6 Consensus size: 7
110275586 AAAAAAGGGA
110275596 AAAAAAG
1 AAAAAAG
110275603 AAAAAAG
1 AAAAAAG
110275610 AAAAAAG
1 AAAAAAG
*
110275617 AAAAAAAT
1 -AAAAAAG
110275625 AAAAAAG
1 AAAAAAG
110275632 AAAAAAAG
1 -AAAAAAG
110275640 AAAAAAG
1 AAAAAAG
110275647 AAAA
1 AAAA
110275651 TGGAGAGGCC
Statistics
Matches: 44, Mismatches: 2, Indels: 4
0.88 0.04 0.08
Matches are distributed among these distances:
7 31 0.70
8 13 0.30
ACGTcount: A:0.87, C:0.00, G:0.11, T:0.02
Consensus pattern (7 bp):
AAAAAAG
Found at i:110275612 original size:15 final size:15
Alignment explanation
Indices: 110275596--110275650 Score: 94
Period size: 15 Copynumber: 3.7 Consensus size: 15
110275586 AAAAAAGGGA
110275596 AAAAAAG-AAAAAAG
1 AAAAAAGAAAAAAAG
*
110275610 AAAAAAGAAAAAAAT
1 AAAAAAGAAAAAAAG
110275625 AAAAAAGAAAAAAAG
1 AAAAAAGAAAAAAAG
110275640 AAAAAAGAAAA
1 AAAAAAGAAAA
110275651 TGGAGAGGCC
Statistics
Matches: 38, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
14 7 0.18
15 31 0.82
ACGTcount: A:0.87, C:0.00, G:0.11, T:0.02
Consensus pattern (15 bp):
AAAAAAGAAAAAAAG
Found at i:110275613 original size:22 final size:22
Alignment explanation
Indices: 110275594--110275650 Score: 89
Period size: 22 Copynumber: 2.6 Consensus size: 22
110275584 GAAAAAAAGG
110275594 GAAAAAAAGAAAAAAGAAAAAA
1 GAAAAAAAGAAAAAAGAAAAAA
*
110275616 GAAAAAAATAAAAAAGAAAAAA
1 GAAAAAAAGAAAAAAGAAAAAA
110275638 -AGAAAAAAGAAAA
1 GA-AAAAAAGAAAA
110275651 TGGAGAGGCC
Statistics
Matches: 32, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
21 1 0.03
22 31 0.97
ACGTcount: A:0.86, C:0.00, G:0.12, T:0.02
Consensus pattern (22 bp):
GAAAAAAAGAAAAAAGAAAAAA
Found at i:110276682 original size:44 final size:44
Alignment explanation
Indices: 110276549--110276991 Score: 300
Period size: 44 Copynumber: 10.0 Consensus size: 44
110276539 TAAGATTTTC
* * * *
110276549 CATCCCTGCGTTTATAGGAAACAGATCGAAGATAGCAGATCTGA
1 CATCCCTGTGTTTATAGGGAACAGATCGAAGATAGCAGATTTGG
* * * * **
110276593 CA-CTCCTGTGCTTACAGCGAAGAAGATCGAAGATTTCAGCA--TGG
1 CATC-CCTGTGTTTATAGGGAA-CAGATCGAAGATAGCAG-ATTTGG
*
110276637 CATCCCTGTGTTTATAGGGAACA-AGTTGAAGATAGCAGATTTGG
1 CATCCCTGTGTTTATAGGGAACAGA-TCGAAGATAGCAGATTTGG
* * **
110276681 CATCCTTGTGTTTATAGGGAACAGATCGAAGATAGCAGATCTAA
1 CATCCCTGTGTTTATAGGGAACAGATCGAAGATAGCAGATTTGG
* * * **
110276725 CA-CTCCTGTGCTTACAGCGAAGCAGATCGAAGATTTCAGCA--TGG
1 CATC-CCTGTGTTTATAGGGAA-CAGATCGAAGATAGCAG-ATTTGG
*
110276769 CATCCCTGTGTTTATAGGGAACA-AGTTGAAGATAGCAGATTTGG
1 CATCCCTGTGTTTATAGGGAACAGA-TCGAAGATAGCAGATTTGG
* * *
110276813 CATCCCTGTGTTTATAGGGAACAGATCGACGATAGCAGATCTGA
1 CATCCCTGTGTTTATAGGGAACAGATCGAAGATAGCAGATTTGG
* * * ** *
110276857 CA-CTCCTGTGCTTACAGCGAAGCAGATCGAAGATTTCAGCA--TAG
1 CATC-CCTGTGTTTATAGGGAA-CAGATCGAAGATAGCAG-ATTTGG
* **
110276901 CATCCCTGTGTTTATAGGGAATA-AGTTAAAGATAG-ATGATTTGG
1 CATCCCTGTGTTTATAGGGAACAGA-TCGAAGATAGCA-GATTTGG
** * * * * *
110276945 CATCTATGTGCTTACAAGGAACAAATCGAAGACATAGCTGATTTGG
1 CATCCCTGTGTTTATAGGGAACAGATCGAAG--ATAGCAGATTTGG
110276991 C
1 C
110276992 TTTCACGTGC
Statistics
Matches: 306, Mismatches: 65, Indels: 54
0.72 0.15 0.13
Matches are distributed among these distances:
42 7 0.02
43 34 0.11
44 201 0.66
45 49 0.16
46 15 0.05
ACGTcount: A:0.31, C:0.19, G:0.24, T:0.26
Consensus pattern (44 bp):
CATCCCTGTGTTTATAGGGAACAGATCGAAGATAGCAGATTTGG
Found at i:110276778 original size:132 final size:132
Alignment explanation
Indices: 110276549--110276976 Score: 705
Period size: 132 Copynumber: 3.2 Consensus size: 132
110276539 TAAGATTTTC
* *
110276549 CATCCCTGCGTTTATAGGAAACAGATCGAAGATAGCAGATCTGACACTCCTGTGCTTACAGCGAA
1 CATCCCTGTGTTTATAGGGAACAGATCGAAGATAGCAGATCTGACACTCCTGTGCTTACAGCGAA
*
110276614 GAAGATCGAAGATTTCAGCATGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGATAGCAGATTT
66 GCAGATCGAAGATTTCAGCATGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGATAGCAGATTT
110276679 GG
131 GG
* *
110276681 CATCCTTGTGTTTATAGGGAACAGATCGAAGATAGCAGATCTAACACTCCTGTGCTTACAGCGAA
1 CATCCCTGTGTTTATAGGGAACAGATCGAAGATAGCAGATCTGACACTCCTGTGCTTACAGCGAA
110276746 GCAGATCGAAGATTTCAGCATGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGATAGCAGATTT
66 GCAGATCGAAGATTTCAGCATGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGATAGCAGATTT
110276811 GG
131 GG
*
110276813 CATCCCTGTGTTTATAGGGAACAGATCGACGATAGCAGATCTGACACTCCTGTGCTTACAGCGAA
1 CATCCCTGTGTTTATAGGGAACAGATCGAAGATAGCAGATCTGACACTCCTGTGCTTACAGCGAA
* * *
110276878 GCAGATCGAAGATTTCAGCATAGCATCCCTGTGTTTATAGGGAATAAGTTAAAGATAG-ATGATT
66 GCAGATCGAAGATTTCAGCATGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGATAGCA-GATT
110276942 TGG
130 TGG
** * * * *
110276945 CATCTATGTGCTTACAAGGAACAAATCGAAGA
1 CATCCCTGTGTTTATAGGGAACAGATCGAAGA
110276977 CATAGCTGAT
Statistics
Matches: 277, Mismatches: 18, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
131 1 0.00
132 276 1.00
ACGTcount: A:0.31, C:0.18, G:0.24, T:0.26
Consensus pattern (132 bp):
CATCCCTGTGTTTATAGGGAACAGATCGAAGATAGCAGATCTGACACTCCTGTGCTTACAGCGAA
GCAGATCGAAGATTTCAGCATGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGATAGCAGATTT
GG
Found at i:110277285 original size:159 final size:159
Alignment explanation
Indices: 110276996--110277472 Score: 866
Period size: 159 Copynumber: 3.0 Consensus size: 159
110276986 TTTGGCTTTC
* * *
110276996 ACGTGCTTACGATGAAGCAAATCTAAGATGATTTGGCATCTCTATATTGTTAGAGAACAAATTGA
1 ACGTGCTTACGATGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGA
* * *
110277061 AGTTTGGCGTCTCCATATTCGACGGAGAGCAGACACATAGCAGATCTGGCCTTCAGATGTTTATA
66 AGTTTGGCGTCTCCATATTCGACGAAGGGCAGACACGTAGCAGATCTGGCCTTCAGATGTTTATA
110277126 CTGAAGCAAGATCCAAGATGATTTGGCAT
131 CTGAAGCAAGATCCAAGATGATTTGGCAT
110277155 ACGTGCTTACGATGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGA
1 ACGTGCTTACGATGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGA
*
110277220 AGTTTGGCGTCTCCATATTCGACGAAGGGCAGACACGTAGCAGATCTAGCCTTCAGATGTTTATA
66 AGTTTGGCGTCTCCATATTCGACGAAGGGCAGACACGTAGCAGATCTGGCCTTCAGATGTTTATA
110277285 CTGAAGCAAGATCCAAGATGATTTGGCAT
131 CTGAAGCAAGATCCAAGATGATTTGGCAT
110277314 ACGTGCTTACGATGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGA
1 ACGTGCTTACGATGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGA
110277379 AGTTTGGCGTCTCCATATTCGACGAAGGGCAGACACGTAGCAGATCTGGCCTTCAGATGTTTATA
66 AGTTTGGCGTCTCCATATTCGACGAAGGGCAGACACGTAGCAGATCTGGCCTTCAGATGTTTATA
*
110277444 CTGAAGCAAGATTCAAGAT-AGTTTGGCAT
131 CTGAAGCAAGATCCAAGATGA-TTTGGCAT
110277473 CCTTGTGCTT
Statistics
Matches: 308, Mismatches: 9, Indels: 2
0.97 0.03 0.01
Matches are distributed among these distances:
158 1 0.00
159 307 1.00
ACGTcount: A:0.31, C:0.18, G:0.23, T:0.28
Consensus pattern (159 bp):
ACGTGCTTACGATGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGA
AGTTTGGCGTCTCCATATTCGACGAAGGGCAGACACGTAGCAGATCTGGCCTTCAGATGTTTATA
CTGAAGCAAGATCCAAGATGATTTGGCAT
Found at i:110277677 original size:207 final size:207
Alignment explanation
Indices: 110277314--110278414 Score: 1801
Period size: 207 Copynumber: 5.3 Consensus size: 207
110277304 GATTTGGCAT
110277314 ACGTGCTTACGATGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGA
1 ACGTGCTTACGATGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGA
* *
110277379 AGTTTGGCGTCTCCATATTCGACGAAGGGCAGACACGTAGCAGATCTGGCCTTCAGATGTTTATA
66 AGTTTGGCGTCTCCATATTCGACGGAGGGCAGACACATAGCAGATCTGGCCTTCAGATGTTTATA
* *
110277444 CTGAAGCAAGATTCAAGATAGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAAGACATAGCT
131 CTGAAGCAAGATCCAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAAGACATAGCT
110277509 GATTTGGCTTTC
196 GATTTGGCTTTC
110277521 ACGTGCTTACGATGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGA
1 ACGTGCTTACGATGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGA
* * *
110277586 AGTTTGGCGTCTCCATATTCGACGGAGGGCAAACACATAGCAGATCTGGCTTTTAGATGTTTATA
66 AGTTTGGCGTCTCCATATTCGACGGAGGGCAGACACATAGCAGATCTGGCCTTCAGATGTTTATA
* *
110277651 TTGAAACAAGATCCAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAAGACATAGCT
131 CTGAAGCAAGATCCAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAAGACATAGCT
110277716 GATTTGGCTTTC
196 GATTTGGCTTTC
* *
110277728 ACGTGCTTACGATGAATCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCAA
1 ACGTGCTTACGATGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGA
* * *
110277793 ATTTTGGCATCTCCATATTCGACGGAGGGCAGACACATTGCAGATCTGGCCTTCAGATGTTTATA
66 AGTTTGGCGTCTCCATATTCGACGGAGGGCAGACACATAGCAGATCTGGCCTTCAGATGTTTATA
110277858 CTGAAGCAAGATCCAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAAGACATAGCT
131 CTGAAGCAAGATCCAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAAGACATAGCT
110277923 GATTTGGCTTTC
196 GATTTGGCTTTC
* * * * *
110277935 ACGTGTTTACGTTGAAGCAAGTCTAAGATGATTTGGCATCTCTATATTGTCAGAGAACAAATTGA
1 ACGTGCTTACGATGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGA
*
110278000 AGTTTGGCGTCTCCATATTCGACGGAGGGCAGACACATAGCAGATCTGACCTTCAGATGTTTATA
66 AGTTTGGCGTCTCCATATTCGACGGAGGGCAGACACATAGCAGATCTGGCCTTCAGATGTTTATA
*
110278065 CTGAAGCAAGATCCAAGATGGTTTGGCATCCTTATGCTTACAAGGAACAAATCGAAGACATAGCT
131 CTGAAGCAAGATCCAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAAGACATAGCT
110278130 GATTTGGCTTTC
196 GATTTGGCTTTC
* * * *
110278142 ACGTGTTTACGTTGAAGCAAGTCTAAGATGATTTGGCATCTCTATATTGTCAGAGAACAAATC-A
1 ACGTGCTTACGATGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGA
* * * * ** * *
110278206 GAGTTTGGCGTTTCCATATTCGACAGATGGCAGACATATAGCAGATCTAACCTTCAGATGATTAG
66 -AGTTTGGCGTCTCCATATTCGACGGAGGGCAGACACATAGCAGATCTGGCCTTCAGATGTTTAT
* * *
110278271 ACTGAAGC-AGATCCAAGATGGTTTGGTATCCTTGTGCTTACAAGGAGCAAATCAAAGACATAGC
130 ACTGAAGCAAGATCCAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAAGACATAGC
110278335 TGATTTGGCTTTC
195 TGATTTGGCTTTC
* * * * * *
110278348 GCGTGTTTACGCTGAAGCAAATCTAAGATGATTTGGTATCTCTGTATTGTCAGGGAACAAATTGA
1 ACGTGCTTACGATGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGA
110278413 AG
66 AG
110278415 AAGCAGATTT
Statistics
Matches: 842, Mismatches: 50, Indels: 5
0.94 0.06 0.01
Matches are distributed among these distances:
206 124 0.15
207 718 0.85
ACGTcount: A:0.30, C:0.18, G:0.23, T:0.29
Consensus pattern (207 bp):
ACGTGCTTACGATGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGA
AGTTTGGCGTCTCCATATTCGACGGAGGGCAGACACATAGCAGATCTGGCCTTCAGATGTTTATA
CTGAAGCAAGATCCAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAAGACATAGCT
GATTTGGCTTTC
Found at i:110278831 original size:19 final size:19
Alignment explanation
Indices: 110278806--110278896 Score: 125
Period size: 19 Copynumber: 4.9 Consensus size: 19
110278796 ATAATCTTCA
*
110278806 ATGATATGTAATCTTAGAT
1 ATGATATGCAATCTTAGAT
* *
110278825 GTGATATGTAATCTTAGAT
1 ATGATATGCAATCTTAGAT
110278844 ATGATA--CAATCTTAGAT
1 ATGATATGCAATCTTAGAT
110278861 ATGAT-TGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
*
110278879 ATGATATACAATCTTAGA
1 ATGATATGCAATCTTAGA
110278897 AGATATGATT
Statistics
Matches: 65, Mismatches: 4, Indels: 6
0.87 0.05 0.08
Matches are distributed among these distances:
17 15 0.23
18 16 0.25
19 34 0.52
ACGTcount: A:0.37, C:0.09, G:0.15, T:0.38
Consensus pattern (19 bp):
ATGATATGCAATCTTAGAT
Found at i:110278846 original size:14 final size:16
Alignment explanation
Indices: 110278815--110278884 Score: 68
Period size: 17 Copynumber: 4.0 Consensus size: 16
110278805 AATGATATGT
*
110278815 AATCTTAGATGTGATA
1 AATCTTAGATATGATA
110278831 TGTAATCTTAGATATGATA
1 ---AATCTTAGATATGATA
*
110278850 CAATCTTAGATATGATTGC
1 -AATCTTAGATATGA-T-A
110278869 AATCTTAGATATGATA
1 AATCTTAGATATGATA
110278885 TACAATCTTA
Statistics
Matches: 45, Mismatches: 4, Indels: 7
0.80 0.07 0.12
Matches are distributed among these distances:
17 15 0.33
18 15 0.33
19 15 0.33
ACGTcount: A:0.37, C:0.09, G:0.16, T:0.39
Consensus pattern (16 bp):
AATCTTAGATATGATA
Found at i:110278878 original size:35 final size:37
Alignment explanation
Indices: 110278815--110278903 Score: 123
Period size: 35 Copynumber: 2.5 Consensus size: 37
110278805 AATGATATGT
* *
110278815 AATCTTAGATGTGATATGTAATCTTAGATATG-ATAC
1 AATCTTAGATATGATATGCAATCTTAGATATGAATAC
110278851 AATCTTAGATATGAT-TGCAATCTTAGATATGATATAC
1 AATCTTAGATATGATATGCAATCTTAGATATGA-ATAC
110278888 AATCTTAGA-A-GATATG
1 AATCTTAGATATGATATG
110278904 ATTTTGTAAT
Statistics
Matches: 48, Mismatches: 2, Indels: 6
0.86 0.04 0.11
Matches are distributed among these distances:
35 18 0.38
36 17 0.35
37 13 0.27
ACGTcount: A:0.38, C:0.09, G:0.16, T:0.37
Consensus pattern (37 bp):
AATCTTAGATATGATATGCAATCTTAGATATGAATAC
Found at i:110283273 original size:30 final size:29
Alignment explanation
Indices: 110283239--110283306 Score: 75
Period size: 29 Copynumber: 2.3 Consensus size: 29
110283229 AAATTATTAT
110283239 TTTAGAAAATTTTTAAAATTTTATATATTC
1 TTTAGAAAATTTTTAAAATTTTATA-ATTC
* * * *
110283269 TTTAG-AATTTTTTTAATTTTTATAATTT
1 TTTAGAAAATTTTTAAAATTTTATAATTC
*
110283297 TTTAAAAAAT
1 TTTAGAAAAT
110283307 ATAAATTTTT
Statistics
Matches: 31, Mismatches: 6, Indels: 3
0.77 0.15 0.08
Matches are distributed among these distances:
28 7 0.23
29 19 0.61
30 5 0.16
ACGTcount: A:0.38, C:0.01, G:0.03, T:0.57
Consensus pattern (29 bp):
TTTAGAAAATTTTTAAAATTTTATAATTC
Found at i:110284235 original size:40 final size:39
Alignment explanation
Indices: 110284184--110284330 Score: 152
Period size: 40 Copynumber: 3.6 Consensus size: 39
110284174 GCAAAAATTG
* *
110284184 TAAAACACAGAGCAATAGCGGCGTTTT-ATCAAAAACGCCGT
1 TAAAA-ACAGAGCAATAGCGGCGTTTTGGT--AAAACGCCGC
* *
110284225 TAAAAACAGAGCATTAGCGGCACTTTTGGTAAAACGCCGC
1 TAAAAACAGAGCAATAGCGGC-GTTTTGGTAAAACGCCGC
* * *
110284265 TAAAAATAGAGCATTAGCGGCGCTTTTGGTAAAGCGCCGC
1 TAAAAACAGAGCAATAGCGGCG-TTTTGGTAAAACGCCGC
* *
110284305 TAAAAACAGGATCAATAGTGGCGTTT
1 TAAAAACA-GAGCAATAGCGGCGTTT
110284331 CTCACATGAC
Statistics
Matches: 91, Mismatches: 11, Indels: 9
0.82 0.10 0.08
Matches are distributed among these distances:
40 70 0.77
41 20 0.22
42 1 0.01
ACGTcount: A:0.35, C:0.20, G:0.23, T:0.22
Consensus pattern (39 bp):
TAAAAACAGAGCAATAGCGGCGTTTTGGTAAAACGCCGC
Found at i:110284440 original size:37 final size:37
Alignment explanation
Indices: 110284368--110284441 Score: 103
Period size: 37 Copynumber: 2.0 Consensus size: 37
110284358 CTCAAAAAAT
* * *
110284368 CATAAACACTAATCTATAACCCCTAAAATAGTAAACC
1 CATAAACACTAAACTATAACCCCTAAAACACTAAACC
* *
110284405 CATAAACACTAAACTATTACCCCTAAAACCCTAAACC
1 CATAAACACTAAACTATAACCCCTAAAACACTAAACC
110284442 AGTTTATGTT
Statistics
Matches: 32, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
37 32 1.00
ACGTcount: A:0.47, C:0.31, G:0.01, T:0.20
Consensus pattern (37 bp):
CATAAACACTAAACTATAACCCCTAAAACACTAAACC
Found at i:110284959 original size:29 final size:29
Alignment explanation
Indices: 110284913--110284995 Score: 89
Period size: 30 Copynumber: 2.8 Consensus size: 29
110284903 AGAGTTATGA
*
110284913 ATTTATGGGTTATGGGGTTTAGGGTTTA-GG
1 ATTTA-GGGTTA-GGGGTTTAGGGTTAAGGG
110284943 ATTTAGGTGTTAGGGGTTTTAGGGTTAAGGG
1 ATTTAGG-GTTAGGGG-TTTAGGGTTAAGGG
**
110284974 ACATA-GGTTAGGGGTTTAGGGT
1 ATTTAGGGTTAGGGGTTTAGGGT
110284996 AATTAGTGTA
Statistics
Matches: 47, Mismatches: 3, Indels: 8
0.81 0.05 0.14
Matches are distributed among these distances:
28 8 0.17
29 14 0.30
30 20 0.43
31 5 0.11
ACGTcount: A:0.19, C:0.01, G:0.41, T:0.39
Consensus pattern (29 bp):
ATTTAGGGTTAGGGGTTTAGGGTTAAGGG
Found at i:110285123 original size:17 final size:17
Alignment explanation
Indices: 110285097--110285149 Score: 54
Period size: 17 Copynumber: 3.1 Consensus size: 17
110285087 AATCTATATA
*
110285097 TTAAATAATTTCAAATT
1 TTAAAAAATTTCAAATT
* *
110285114 TTAAAGAA-TTAAAATT
1 TTAAAAAATTTCAAATT
*
110285130 TTAAAAAAATTTCAAGTT
1 TT-AAAAAATTTCAAATT
110285148 TT
1 TT
110285150 CAAATTTTAT
Statistics
Matches: 29, Mismatches: 5, Indels: 3
0.78 0.14 0.08
Matches are distributed among these distances:
16 9 0.31
17 12 0.41
18 8 0.28
ACGTcount: A:0.49, C:0.04, G:0.04, T:0.43
Consensus pattern (17 bp):
TTAAAAAATTTCAAATT
Found at i:110285765 original size:114 final size:114
Alignment explanation
Indices: 110285415--110285743 Score: 457
Period size: 114 Copynumber: 2.9 Consensus size: 114
110285405 ATTATGTATT
* * * * *
110285415 AAAC-AAAACGGAGCCGTTTTATTGGATTTGTTAGTGGCGTTTTGCGCAAAACGCCGCAATAGGT
1 AAACAAAAACGGCGTCGTTTTATT--ATTTATTAGTGGCGTTTTGGGCTAAACGCCGCAATAGGT
*
110285479 GTGTTTTTAGCGGCGCTAGGATATAAACGCCGCTAAAGGTGATTTCGGTTA
64 GCGTTTTTAGCGGCGCTAGGATATAAACGCCGCTAAAGGTGATTTCGGTTA
* * ***
110285530 AAACAAAAACGGCGTCATTTTGTTATTTATTAGTGGCGTTTTGGGGCTAAATATCGCAATAGGTG
1 AAACAAAAACGGCGTCGTTTTATTATTTATTAGTGGCGTTTT-GGGCTAAACGCCGCAATAGGTG
*
110285595 CG-TTTTAGCGGCGCTAGGGTATAAACGCCGCTAAAGGTGATTTCGGTTA
65 CGTTTTTAGCGGCGCTAGGATATAAACGCCGCTAAAGGTGATTTCGGTTA
110285644 AAACAAAAACGGCGTCGTTTTATTATATTATTAGTGGCGTTTTGAGGCTAAACGCCGCAATAGGT
1 AAACAAAAACGGCGTCGTTTTATTAT-TTATTAGTGGCGTTTTG-GGCTAAACGCCGCAATAGGT
* * *
110285709 G-GTTTTTAGCAGCGTTAGGTTATAAACGCCGCTAA
64 GCGTTTTTAGCGGCGCTAGGATATAAACGCCGCTAA
110285744 TGTTAAATTA
Statistics
Matches: 189, Mismatches: 20, Indels: 10
0.86 0.09 0.05
Matches are distributed among these distances:
114 89 0.47
115 85 0.45
116 15 0.08
ACGTcount: A:0.27, C:0.16, G:0.26, T:0.31
Consensus pattern (114 bp):
AAACAAAAACGGCGTCGTTTTATTATTTATTAGTGGCGTTTTGGGCTAAACGCCGCAATAGGTGC
GTTTTTAGCGGCGCTAGGATATAAACGCCGCTAAAGGTGATTTCGGTTA
Found at i:110286934 original size:13 final size:13
Alignment explanation
Indices: 110286899--110286935 Score: 56
Period size: 14 Copynumber: 2.8 Consensus size: 13
110286889 ATCCCGATCA
110286899 AGTTAAACCAGCT
1 AGTTAAACCAGCT
*
110286912 TGTTATAACCAGCT
1 AGTTA-AACCAGCT
110286926 AGTTAAACCA
1 AGTTAAACCA
110286936 CATTTTTTGA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
13 9 0.43
14 12 0.57
ACGTcount: A:0.38, C:0.22, G:0.14, T:0.27
Consensus pattern (13 bp):
AGTTAAACCAGCT
Found at i:110287238 original size:22 final size:21
Alignment explanation
Indices: 110287193--110287244 Score: 86
Period size: 21 Copynumber: 2.4 Consensus size: 21
110287183 TTCTTTAAGA
*
110287193 TTTTATTATGGTTGACATTTT
1 TTTTATTTTGGTTGACATTTT
110287214 TTTTATTTTGGTTGACATTTTT
1 TTTTATTTTGGTTGACA-TTTT
110287236 TTTTATTTT
1 TTTTATTTT
110287245 TGAGTTTTGT
Statistics
Matches: 29, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
21 16 0.55
22 13 0.45
ACGTcount: A:0.15, C:0.04, G:0.12, T:0.69
Consensus pattern (21 bp):
TTTTATTTTGGTTGACATTTT
Found at i:110288085 original size:20 final size:20
Alignment explanation
Indices: 110288055--110288101 Score: 60
Period size: 20 Copynumber: 2.4 Consensus size: 20
110288045 TGGTTGTGTT
110288055 AATAA-TAATTTAAATATAA
1 AATAAGTAATTTAAATATAA
* *
110288074 AATAAGTAATTTTAATATTA
1 AATAAGTAATTTAAATATAA
*
110288094 AATGAGTA
1 AATAAGTA
110288102 TTGAATATAA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
19 5 0.21
20 19 0.79
ACGTcount: A:0.55, C:0.00, G:0.06, T:0.38
Consensus pattern (20 bp):
AATAAGTAATTTAAATATAA
Found at i:110291012 original size:241 final size:241
Alignment explanation
Indices: 110290714--110291172 Score: 873
Period size: 241 Copynumber: 1.9 Consensus size: 241
110290704 TCTTGTAGTG
110290714 TATCGAGCTCATTTACTATTGAATATTTATTACCATGTAGCTTGCTTGTCCATTAAAATTACAAC
1 TATCGAGCTCATTTACTATTGAATATTTATTACCATGTAGCTTGCTTGTCCATTAAAATTACAAC
*
110290779 AATAGCTGACCTTCTCTCTAACCTTTTTTTAAATATTTTAAAGATTCAAAGTATATAGGCTGGAA
66 AATAGCTGACCTTCTCTCCAACCTTTTTTTAAATATTTTAAAGATTCAAAGTATATAGGCTGGAA
* *
110290844 ACCTGACGGGTTGCCTTATATCGAGCTGTAAGATATAATGGATCCTTCCTAGGTGTAACAATGCC
131 ACCTGACGGGTTGCCTTATATCGAGCTGTAAGATATAATGGATCCTCCCTAGGTGTAACAACGCC
110290909 ACGTATGATGAATCTTAAAAAATTCAAAAAGACTTGAAAAAAGTTC
196 ACGTATGATGAATCTTAAAAAATTCAAAAAGACTTGAAAAAAGTTC
110290955 TATCGAGCTCATTTACTATTGAATATTTATTACCATGTAGCTTGCTTGTCCATTAAAATTACAAC
1 TATCGAGCTCATTTACTATTGAATATTTATTACCATGTAGCTTGCTTGTCCATTAAAATTACAAC
* *
110291020 AATAGCTGACCTTCTCTCCAACCTTTTTTTAAATATTTTAGAGATTCCAAGTATATAGGCTGGAA
66 AATAGCTGACCTTCTCTCCAACCTTTTTTTAAATATTTTAAAGATTCAAAGTATATAGGCTGGAA
110291085 ACCTGACGGGTTGCCTTATATCGAGCTGTAAGATATAATGGATCCTCCCTAGGTGTAACAACGCC
131 ACCTGACGGGTTGCCTTATATCGAGCTGTAAGATATAATGGATCCTCCCTAGGTGTAACAACGCC
110291150 ACGTATGATGAATCTTAAAAAAT
196 ACGTATGATGAATCTTAAAAAAT
110291173 AACTTACATA
Statistics
Matches: 213, Mismatches: 5, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
241 213 1.00
ACGTcount: A:0.33, C:0.18, G:0.15, T:0.34
Consensus pattern (241 bp):
TATCGAGCTCATTTACTATTGAATATTTATTACCATGTAGCTTGCTTGTCCATTAAAATTACAAC
AATAGCTGACCTTCTCTCCAACCTTTTTTTAAATATTTTAAAGATTCAAAGTATATAGGCTGGAA
ACCTGACGGGTTGCCTTATATCGAGCTGTAAGATATAATGGATCCTCCCTAGGTGTAACAACGCC
ACGTATGATGAATCTTAAAAAATTCAAAAAGACTTGAAAAAAGTTC
Found at i:110291185 original size:9 final size:9
Alignment explanation
Indices: 110291171--110291229 Score: 82
Period size: 9 Copynumber: 6.6 Consensus size: 9
110291161 ATCTTAAAAA
110291171 ATAACTTAC
1 ATAACTTAC
*
110291180 ATAACTCAC
1 ATAACTTAC
110291189 ATAACTTAC
1 ATAACTTAC
*
110291198 ATAATTTAC
1 ATAACTTAC
*
110291207 ATAACTCAC
1 ATAACTTAC
*
110291216 ATAACGTAC
1 ATAACTTAC
110291225 ATAAC
1 ATAAC
110291230 AACTTACGAA
Statistics
Matches: 43, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
9 43 1.00
ACGTcount: A:0.46, C:0.24, G:0.02, T:0.29
Consensus pattern (9 bp):
ATAACTTAC
Found at i:110291209 original size:27 final size:27
Alignment explanation
Indices: 110291171--110291229 Score: 100
Period size: 27 Copynumber: 2.2 Consensus size: 27
110291161 ATCTTAAAAA
*
110291171 ATAACTTACATAACTCACATAACTTAC
1 ATAACTTACATAACTCACATAACGTAC
*
110291198 ATAATTTACATAACTCACATAACGTAC
1 ATAACTTACATAACTCACATAACGTAC
110291225 ATAAC
1 ATAAC
110291230 AACTTACGAA
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 29 1.00
ACGTcount: A:0.46, C:0.24, G:0.02, T:0.29
Consensus pattern (27 bp):
ATAACTTACATAACTCACATAACGTAC
Found at i:110295939 original size:22 final size:22
Alignment explanation
Indices: 110295910--110295977 Score: 84
Period size: 22 Copynumber: 3.0 Consensus size: 22
110295900 TGCACAAACG
110295910 AACAGAGAGCACTAAAGTGCTA
1 AACAGAGAGCACTAAAGTGCTA
* *
110295932 TACAGAGAGCAC-AGATGTGCTA
1 AACAGAGAGCACTA-AAGTGCTA
*
110295954 AACAGAGAGCACTTAACGTGCTA
1 AACAGAGAGCAC-TAAAGTGCTA
110295977 A
1 A
110295978 TAATAGAACG
Statistics
Matches: 39, Mismatches: 4, Indels: 5
0.81 0.08 0.10
Matches are distributed among these distances:
21 1 0.03
22 29 0.74
23 8 0.21
24 1 0.03
ACGTcount: A:0.41, C:0.19, G:0.24, T:0.16
Consensus pattern (22 bp):
AACAGAGAGCACTAAAGTGCTA
Found at i:110297127 original size:22 final size:22
Alignment explanation
Indices: 110297085--110297127 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
110297075 TTCGTCCCTG
* **
110297085 CTATTCTGTTTGTTTGTTTTTT
1 CTATTCTGTTTCTTTACTTTTT
110297107 CTATTCTGTTTCTTTACTTTT
1 CTATTCTGTTTCTTTACTTTT
110297128 CTTATGTTTT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.07, C:0.14, G:0.09, T:0.70
Consensus pattern (22 bp):
CTATTCTGTTTCTTTACTTTTT
Found at i:110297146 original size:7 final size:7
Alignment explanation
Indices: 110297136--110297231 Score: 54
Period size: 7 Copynumber: 13.3 Consensus size: 7
110297126 TTCTTATGTT
110297136 TTATATA
1 TTATATA
110297143 TTATATTATA
1 -T-TAT-ATA
110297153 TTATATA
1 TTATATA
*
110297160 TAATAATA
1 TTAT-ATA
*
110297168 TAATATA
1 TTATATA
110297175 TTATATA
1 TTATATA
110297182 TTA-ATA
1 TTATATA
*
110297188 CTTAAATA
1 -TTATATA
110297196 TTA-AGT-
1 TTATA-TA
*
110297202 TAATATA
1 TTATATA
*
110297209 ATATATA
1 TTATATA
*
110297216 ATATATA
1 TTATATA
*
110297223 ATATATA
1 TTATATA
110297230 TT
1 TT
110297232 TTTATATAAA
Statistics
Matches: 74, Mismatches: 6, Indels: 17
0.76 0.06 0.18
Matches are distributed among these distances:
6 7 0.09
7 46 0.62
8 14 0.19
9 4 0.05
10 3 0.04
ACGTcount: A:0.49, C:0.01, G:0.01, T:0.49
Consensus pattern (7 bp):
TTATATA
Found at i:110297182 original size:34 final size:36
Alignment explanation
Indices: 110297137--110297230 Score: 104
Period size: 39 Copynumber: 2.6 Consensus size: 36
110297127 TCTTATGTTT
*
110297137 TATATATTATATTATATTATATA-TAA-TAATATAA
1 TATATAATATATTATATTATATATTAAGTAATATAA
* *
110297171 TATATTATATATTAATACTTAAATATTAAGTTAATATAA
1 TATATAATATATT-ATA-TTATATATTAAG-TAATATAA
*
110297210 TATATAATATATAATA-TATAT
1 TATATAATATATTATATTATAT
110297231 TTTTATATAA
Statistics
Matches: 49, Mismatches: 6, Indels: 8
0.78 0.10 0.13
Matches are distributed among these distances:
34 11 0.22
35 3 0.06
36 10 0.20
37 3 0.06
38 3 0.06
39 19 0.39
ACGTcount: A:0.50, C:0.01, G:0.01, T:0.48
Consensus pattern (36 bp):
TATATAATATATTATATTATATATTAAGTAATATAA
Found at i:110299751 original size:31 final size:31
Alignment explanation
Indices: 110299689--110299771 Score: 85
Period size: 31 Copynumber: 2.6 Consensus size: 31
110299679 TTAGAATTCA
* **
110299689 TGTTTTTGGTTGTATTTTTTATGTTAAATTTGC
1 TGTTTTTGGTTGCA--TTTTATACTAAATTTGC
* *
110299722 TGTTTTTGGTTGCATTTTATACTATATTTGT
1 TGTTTTTGGTTGCATTTTATACTAAATTTGC
* *
110299753 TGTATTTGGTTGGATTTTA
1 TGTTTTTGGTTGCATTTTA
110299772 ATGCAGGAAG
Statistics
Matches: 43, Mismatches: 7, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
31 30 0.70
33 13 0.30
ACGTcount: A:0.16, C:0.04, G:0.19, T:0.61
Consensus pattern (31 bp):
TGTTTTTGGTTGCATTTTATACTAAATTTGC
Found at i:110299909 original size:43 final size:43
Alignment explanation
Indices: 110299843--110300088 Score: 368
Period size: 43 Copynumber: 5.7 Consensus size: 43
110299833 TTTGTGGGAA
* * * *
110299843 AAACGCCACTAAAAGCCATGACTTTTAGCGGCGCTTTTCCCAC
1 AAACGCCGCTAAAGGACGTGACTTTTAGCGGCGCTTTTCCCAC
*
110299886 AAACGCCGCTAAAGGACGAGACTTTTAGCGGCGCTTTTCCCAC
1 AAACGCCGCTAAAGGACGTGACTTTTAGCGGCGCTTTTCCCAC
110299929 AAACGCCGCTAAAGGACGTGACTTTTAGCGGCGCTTTTCCCAC
1 AAACGCCGCTAAAGGACGTGACTTTTAGCGGCGCTTTTCCCAC
* *
110299972 AAACACCGCTAAAGGACGTGACTTTTAGCAGCGCTTTTCCCAC
1 AAACGCCGCTAAAGGACGTGACTTTTAGCGGCGCTTTTCCCAC
* * *
110300015 AAACGCCGCTAAAAGACATGACTTTTAGCGACGC-TTTCCCAC
1 AAACGCCGCTAAAGGACGTGACTTTTAGCGGCGCTTTTCCCAC
* * *
110300057 AAACGCCGCTAAAAGCCGTGACTTTTAACGGC
1 AAACGCCGCTAAAGGACGTGACTTTTAGCGGC
110300089 ATTTTTTTTA
Statistics
Matches: 186, Mismatches: 17, Indels: 1
0.91 0.08 0.00
Matches are distributed among these distances:
42 36 0.19
43 150 0.81
ACGTcount: A:0.28, C:0.30, G:0.20, T:0.22
Consensus pattern (43 bp):
AAACGCCGCTAAAGGACGTGACTTTTAGCGGCGCTTTTCCCAC
Found at i:110302949 original size:46 final size:46
Alignment explanation
Indices: 110302901--110303082 Score: 249
Period size: 46 Copynumber: 4.0 Consensus size: 46
110302891 GCTCTCTGAT
* * *
110302901 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAGCTTGAT
1 ATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAGCATGAC
* *
110302947 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAGCGTGAC
1 ATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAGCATGAC
* *
110302993 ATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGAC
1 ATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAGCATGAC
* * * *
110303039 A-GAAAATGAGTAAGACCATAGTTGAAAGACACTATGGCATCATG
1 ATG-AAATGAGTAAGACCATGGTTGAAAGATACCATGGCAGCATG
110303083 TCAAAGATAA
Statistics
Matches: 124, Mismatches: 11, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
45 1 0.01
46 123 0.99
ACGTcount: A:0.39, C:0.14, G:0.25, T:0.22
Consensus pattern (46 bp):
ATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAGCATGAC
Found at i:110304093 original size:50 final size:50
Alignment explanation
Indices: 110304001--110304095 Score: 120
Period size: 50 Copynumber: 1.9 Consensus size: 50
110303991 CTAGAAGAAA
* * * *
110304001 AAAAACTAGAACTACTACAACTTTTAGAGGAAATAAAATGGATTAAAACT
1 AAAAACTAAAACCACCACAACTTTTAGAGGAAACAAAATGGATTAAAACT
* *
110304051 AAAAACTAAAACCACCACAACTTTTAGA-TAAGACAAAGTGGATTA
1 AAAAACTAAAACCACCACAACTTTTAGAGGAA-ACAAAATGGATTA
110304096 TTATTTATTT
Statistics
Matches: 38, Mismatches: 6, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
49 2 0.05
50 36 0.95
ACGTcount: A:0.52, C:0.15, G:0.12, T:0.22
Consensus pattern (50 bp):
AAAAACTAAAACCACCACAACTTTTAGAGGAAACAAAATGGATTAAAACT
Found at i:110306750 original size:14 final size:14
Alignment explanation
Indices: 110306731--110306760 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
110306721 TAATTACAAA
110306731 TAAGACTCAGACTC
1 TAAGACTCAGACTC
*
110306745 TAAGACTCAGCCTC
1 TAAGACTCAGACTC
110306759 TA
1 TA
110306761 GGTCGCTCCG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.33, C:0.30, G:0.13, T:0.23
Consensus pattern (14 bp):
TAAGACTCAGACTC
Found at i:110310983 original size:58 final size:58
Alignment explanation
Indices: 110310856--110310985 Score: 136
Period size: 58 Copynumber: 2.2 Consensus size: 58
110310846 TATCAAATTG
* * * *
110310856 GAAAAAAAAAATGCTTAAATATCAAATTAGGAAAAAGTGTCAAGTTCAAGTACCAAATT
1 GAAAAAAAAAA-GCTTAAATATCAAATTAGGAAAAAGTCTCAAATTCAAGCACCAAATA
** * * **
110310915 GAACCCAAAAAA-CTTAGATATCAAATTAGGAAAAATTCTCAAATTTGAGCACCAAAATA
1 GAA-AAAAAAAAGCTTAAATATCAAATTAGGAAAAAGTCTCAAATTCAAGCACC-AAATA
110310974 GAAAAAAAAAAG
1 GAAAAAAAAAAG
110310986 TCTAAGTTCT
Statistics
Matches: 56, Mismatches: 12, Indels: 6
0.76 0.16 0.08
Matches are distributed among these distances:
58 40 0.71
59 10 0.18
60 6 0.11
ACGTcount: A:0.55, C:0.12, G:0.12, T:0.21
Consensus pattern (58 bp):
GAAAAAAAAAAGCTTAAATATCAAATTAGGAAAAAGTCTCAAATTCAAGCACCAAATA
Found at i:110311441 original size:19 final size:20
Alignment explanation
Indices: 110311416--110311459 Score: 58
Period size: 18 Copynumber: 2.3 Consensus size: 20
110311406 GATTTTTGAG
110311416 TTATTTTAT-TAATT-TTAAA
1 TTATTTT-TGTAATTATTAAA
110311435 -TATTTTTGTAATTATTAAA
1 TTATTTTTGTAATTATTAAA
110311454 TTATTT
1 TTATTT
110311460 GTCGAAATGG
Statistics
Matches: 22, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
17 1 0.05
18 11 0.50
19 5 0.23
20 5 0.23
ACGTcount: A:0.34, C:0.00, G:0.02, T:0.64
Consensus pattern (20 bp):
TTATTTTTGTAATTATTAAA
Found at i:110312872 original size:33 final size:33
Alignment explanation
Indices: 110312825--110312887 Score: 117
Period size: 33 Copynumber: 1.9 Consensus size: 33
110312815 CAGTTGTTTA
*
110312825 CTTAAAAAATGTGATTTTGTTATTTTTTTTCTT
1 CTTAAAAAAGGTGATTTTGTTATTTTTTTTCTT
110312858 CTTAAAAAAGGTGATTTTGTTATTTTTTTT
1 CTTAAAAAAGGTGATTTTGTTATTTTTTTT
110312888 GTCTTCTCTG
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 29 1.00
ACGTcount: A:0.25, C:0.05, G:0.11, T:0.59
Consensus pattern (33 bp):
CTTAAAAAAGGTGATTTTGTTATTTTTTTTCTT
Found at i:110313699 original size:21 final size:21
Alignment explanation
Indices: 110313675--110313729 Score: 58
Period size: 21 Copynumber: 2.6 Consensus size: 21
110313665 CTTATAAATT
110313675 TTTATTATATATACATTTTAC
1 TTTATTATATATACATTTTAC
**
110313696 TTTA-TATATTATTTATTTTAC
1 TTTATTATA-TATACATTTTAC
*
110313717 TATATTTATATAT
1 TTTA-TTATATAT
110313730 GTAAATTATT
Statistics
Matches: 28, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
20 4 0.14
21 17 0.61
22 3 0.11
23 4 0.14
ACGTcount: A:0.33, C:0.05, G:0.00, T:0.62
Consensus pattern (21 bp):
TTTATTATATATACATTTTAC
Done.