Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A06
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 115140250
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2234201 characters in sequence are not A, C, G, or T
File 329 of 345
Found at i:110313762 original size:16 final size:16
Alignment explanation
Indices: 110313674--110313783 Score: 56
Period size: 16 Copynumber: 6.8 Consensus size: 16
110313664 TCTTATAAAT
*
110313674 TTTTATTA-TATATACA
1 TTTTATTATTATAT-TA
110313690 TTTTACTT-TATATATTA
1 TTTTA-TTAT-TATATTA
110313707 -TTTATT-TTACTA-TA
1 TTTTATTATTA-TATTA
*
110313721 -TTTATATATGTAAATTA
1 TTTTAT-TAT-TATATTA
110313738 TTATATATTATTATATTA
1 TT-T-TATTATTATATTA
*
110313756 TTTTATTATTA-ACTA
1 TTTTATTATTATATTA
110313771 -TTTATTATGTATA
1 TTTTATTAT-TATA
110313784 ATTAACATTT
Statistics
Matches: 77, Mismatches: 4, Indels: 26
0.72 0.04 0.24
Matches are distributed among these distances:
14 17 0.22
15 11 0.14
16 20 0.26
17 8 0.10
18 14 0.18
19 4 0.05
20 3 0.04
ACGTcount: A:0.35, C:0.04, G:0.02, T:0.60
Consensus pattern (16 bp):
TTTTATTATTATATTA
Found at i:110325776 original size:44 final size:44
Alignment explanation
Indices: 110325721--110326789 Score: 1129
Period size: 44 Copynumber: 24.2 Consensus size: 44
110325711 GTAAATCACC
* * * *
110325721 GATAGCTGATTTGGCGTCTCCGTATTGTCAGAGAGCAAATCGAA
1 GATAGCAGATTTGGCGTCTCTGTATTGACAGAGAGCAGATCGAA
* *
110325765 GATAGCAGATTTAGCGTCTCTGTATTGACAGAGAGTAGATCGAA
1 GATAGCAGATTTGGCGTCTCTGTATTGACAGAGAGCAGATCGAA
*
110325809 GAT-GACAGATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCGAA
1 GATAG-CAGATTTGGCGTCTCTGTATTGACAGAGAGCAGATCGAA
* * *
110325853 GATAACAGATTTGGCATCTCTGTATTGACAGAGAGCAGATCAAA
1 GATAGCAGATTTGGCGTCTCTGTATTGACAGAGAGCAGATCGAA
* * ** *
110325897 GATAACAGATTTGGTGTCTCTGTATTGATGGAGAGCAAATCGAA
1 GATAGCAGATTTGGCGTCTCTGTATTGACAGAGAGCAGATCGAA
* * * *
110325941 GATAACAGATTTTGCGTCTCTGTATTGACAGAGAGCAAATCAAA
1 GATAGCAGATTTGGCGTCTCTGTATTGACAGAGAGCAGATCGAA
*
110325985 GATAGCAGATTTGGCGTCTCTGTATTGACGGAGAGCAGATCGAA
1 GATAGCAGATTTGGCGTCTCTGTATTGACAGAGAGCAGATCGAA
* * * *
110326029 GATAACAGATTTGGTGTCTCTGTGTTGACAGAGAGCAGATCAAA
1 GATAGCAGATTTGGCGTCTCTGTATTGACAGAGAGCAGATCGAA
* * * *
110326073 GATAGCAGATTTGGCGTCTCTATATTGATAGAGCGCAGATCAAA
1 GATAGCAGATTTGGCGTCTCTGTATTGACAGAGAGCAGATCGAA
*
110326117 GATAGCAGATTTGGCGTCTCTGTATTGACGGAGAGCAGATCGAA
1 GATAGCAGATTTGGCGTCTCTGTATTGACAGAGAGCAGATCGAA
* * * * *
110326161 GATAACAAATTTGGCATCTCTGTATTGACGGAAAGCAGATCGAA
1 GATAGCAGATTTGGCGTCTCTGTATTGACAGAGAGCAGATCGAA
*
110326205 GATAGCAGATTTGGCGTCTCTGTATTGACGGAGAGCAGATCGAA
1 GATAGCAGATTTGGCGTCTCTGTATTGACAGAGAGCAGATCGAA
110326249 GATAGCAGATTTGGCGTCTCTGTATTGACAGAGAGCAGATCGAA
1 GATAGCAGATTTGGCGTCTCTGTATTGACAGAGAGCAGATCGAA
* * * * *
110326293 GATAACAGATTTGGCATCTCTGTATTGACGGAAAGCAGATCGAT
1 GATAGCAGATTTGGCGTCTCTGTATTGACAGAGAGCAGATCGAA
* *
110326337 GATAGCAGATTTGGCGTCTCTGTATTGACGGAGAGCAAATCGAA
1 GATAGCAGATTTGGCGTCTCTGTATTGACAGAGAGCAGATCGAA
* *
110326381 GATAGCAGATTTGGCATCTCTGTATTGACGGAGAGCAGATCGAA
1 GATAGCAGATTTGGCGTCTCTGTATTGACAGAGAGCAGATCGAA
* *
110326425 GATAGCAGATTTGGCGTCT-TAGTATTGACAAAGAGCAGATTGAA
1 GATAGCAGATTTGGCGTCTCT-GTATTGACAGAGAGCAGATCGAA
* * * * * **
110326469 AATAACAGATTTTGCGTCCCTGTGTTAGATGGAGAGCAGATCGAA
1 GATAGCAGATTTGGCGTCTCTGTATT-GACAGAGAGCAGATCGAA
* * * * * * *
110326514 GATAGCAGATCTGACAT-T-TGTATGTTTACATCAAAGCAGATTGAA
1 GATAGCAGATTTGGCGTCTCTGTA--TTGACA-GAGAGCAGATCGAA
* * * *
110326559 GAT-GACAGATTTGGCCTCTCTGTATTAAGCA-AGGAGTAGATCAAA
1 GATAG-CAGATTTGGCGTCTCTGTATTGA-CAGA-GAGCAGATCGAA
*** * * *
110326604 GATTTTAGCA--TGGCAT-TCCTG-AGTTTG-CAGGGAGCA-AGTTGAA
1 GATAGCAG-ATTTGGCGTCT-CTGTA--TTGACAGAGAGCAGA-TCGAA
* * * * *
110326647 GATAGTAGATTTGGCGTCTCTGTATTAACAAATAGCAGATCGGA
1 GATAGCAGATTTGGCGTCTCTGTATTGACAGAGAGCAGATCGAA
* * *
110326691 GATAGCAGATTTGGCGTCT-TAGTATTGACAAATAGCAGATTGAA
1 GATAGCAGATTTGGCGTCTCT-GTATTGACAGAGAGCAGATCGAA
* ** * * ** *
110326735 AATAATAGATTTTGCGTCTCTGTGTTAGATGGGGAGCAGATCGAA
1 GATAGCAGATTTGGCGTCTCTGTATT-GACAGAGAGCAGATCGAA
110326780 GATAGCAGAT
1 GATAGCAGAT
110326790 CTAACATTTG
Statistics
Matches: 860, Mismatches: 136, Indels: 57
0.82 0.13 0.05
Matches are distributed among these distances:
42 2 0.00
43 25 0.03
44 733 0.85
45 92 0.11
46 4 0.00
47 4 0.00
ACGTcount: A:0.31, C:0.15, G:0.27, T:0.27
Consensus pattern (44 bp):
GATAGCAGATTTGGCGTCTCTGTATTGACAGAGAGCAGATCGAA
Found at i:110326852 original size:266 final size:266
Alignment explanation
Indices: 110326115--110326924 Score: 980
Period size: 266 Copynumber: 3.1 Consensus size: 266
110326105 GCGCAGATCA
* * ** * * *
110326115 AAGATAGCAGATTTGGCGTCTCTGTATTGACGGAGAGCAGATCGAAGATAACAAATTTGGCATCT
1 AAGATAGCAGATTTGGCATCTCTGTATTAACAAAGAGCAGATCGAAGATAGCAGATTTGGCGTCT
* * * * * * * *
110326180 CT-GTATTGACGGAA-AGCAGATCGAAGATAGCAGATTTGGCGTCTCTGTATT-GACGGAGAGCA
66 -TAGTATTGAC-AAAGAGCAGATTGAAAATAACAGATTTTGCGTCCCTGTGTTAGATGGAGAGCA
* ** * * * * * *
110326242 GATCGAAGATAGCAGATTTGGCGTCTCTGTAT--TGACA-GAGAGCAGATCGAAGATAACAGATT
129 GATCGAAGATAGCAGATCTAACAT-T-TGTATGCTTACATCAAAGCAGATTGAAGATGACAGATT
* * * * * * ** *
110326304 TGGCATCTCTGTATTGACGGAA--AGCAGATCGATGATAGCAG-ATTTGGC-GTCTCT--GTATT
192 TGGCCTCTCTGTATT-AAGCAAGGAGTAGATCAAAGATTTCAGCA--TGGCATTC-CTGAGT-TT
* *
110326363 G-ACGGAGAGCAAATCG
252 GCA-GG-GAGCAAGTTG
* **
110326379 AAGATAGCAGATTTGGCATCTCTGTATTGACGGAGAGCAGATCGAAGATAGCAGATTTGGCGTCT
1 AAGATAGCAGATTTGGCATCTCTGTATTAACAAAGAGCAGATCGAAGATAGCAGATTTGGCGTCT
110326444 TAGTATTGACAAAGAGCAGATTGAAAATAACAGATTTTGCGTCCCTGTGTTAGATGGAGAGCAGA
66 TAGTATTGACAAAGAGCAGATTGAAAATAACAGATTTTGCGTCCCTGTGTTAGATGGAGAGCAGA
* *
110326509 TCGAAGATAGCAGATCTGACATTTGTATGTTTACATCAAAGCAGATTGAAGATGACAGATTTGGC
131 TCGAAGATAGCAGATCTAACATTTGTATGCTTACATCAAAGCAGATTGAAGATGACAGATTTGGC
*
110326574 CTCTCTGTATTAAGCAAGGAGTAGATCAAAGATTTTAGCATGGCATTCCTGAGTTTGCAGGGAGC
196 CTCTCTGTATTAAGCAAGGAGTAGATCAAAGATTTCAGCATGGCATTCCTGAGTTTGCAGGGAGC
110326639 AAGTTG
261 AAGTTG
* * * *
110326645 AAGATAGTAGATTTGGCGTCTCTGTATTAACAAATAGCAGATCGGAGATAGCAGATTTGGCGTCT
1 AAGATAGCAGATTTGGCATCTCTGTATTAACAAAGAGCAGATCGAAGATAGCAGATTTGGCGTCT
* * * *
110326710 TAGTATTGACAAATAGCAGATTGAAAATAATAGATTTTGCGTCTCTGTGTTAGATGGGGAGCAGA
66 TAGTATTGACAAAGAGCAGATTGAAAATAACAGATTTTGCGTCCCTGTGTTAGATGGAGAGCAGA
110326775 TCGAAGATAGCAGATCTAACATTTGTATGCTTACATCAAAGCAGATTGAAGATGACAGATTTGGC
131 TCGAAGATAGCAGATCTAACATTTGTATGCTTACATCAAAGCAGATTGAAGATGACAGATTTGGC
*
110326840 CTCTCTGTATTAAGCAAGGAGTAGATCAAAGATTTCAGCATGGCGTTCCTGAGTTTGCAGGGAGC
196 CTCTCTGTATTAAGCAAGGAGTAGATCAAAGATTTCAGCATGGCATTCCTGAGTTTGCAGGGAGC
110326905 AAGTTG
261 AAGTTG
110326911 AAGATAGCAGATTT
1 AAGATAGCAGATTT
110326925 AACATTCCTG
Statistics
Matches: 485, Mismatches: 48, Indels: 24
0.87 0.09 0.04
Matches are distributed among these distances:
263 8 0.02
264 101 0.21
265 39 0.08
266 313 0.65
267 20 0.04
268 4 0.01
ACGTcount: A:0.31, C:0.15, G:0.27, T:0.27
Consensus pattern (266 bp):
AAGATAGCAGATTTGGCATCTCTGTATTAACAAAGAGCAGATCGAAGATAGCAGATTTGGCGTCT
TAGTATTGACAAAGAGCAGATTGAAAATAACAGATTTTGCGTCCCTGTGTTAGATGGAGAGCAGA
TCGAAGATAGCAGATCTAACATTTGTATGCTTACATCAAAGCAGATTGAAGATGACAGATTTGGC
CTCTCTGTATTAAGCAAGGAGTAGATCAAAGATTTCAGCATGGCATTCCTGAGTTTGCAGGGAGC
AAGTTG
Found at i:110328577 original size:21 final size:21
Alignment explanation
Indices: 110328553--110328607 Score: 58
Period size: 21 Copynumber: 2.6 Consensus size: 21
110328543 CTTATAAATT
110328553 TTTATTATATATACATTTTAC
1 TTTATTATATATACATTTTAC
**
110328574 TTTA-TATATTATTTATTTTAC
1 TTTATTATA-TATACATTTTAC
*
110328595 TATATTTATATAT
1 TTTA-TTATATAT
110328608 GTAAATTATT
Statistics
Matches: 28, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
20 4 0.14
21 17 0.61
22 3 0.11
23 4 0.14
ACGTcount: A:0.33, C:0.05, G:0.00, T:0.62
Consensus pattern (21 bp):
TTTATTATATATACATTTTAC
Found at i:110338198 original size:5 final size:6
Alignment explanation
Indices: 110338182--110338206 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
110338172 AAATATGATT
110338182 TAAAAA TAAAAA TAAAAA TAAAAA T
1 TAAAAA TAAAAA TAAAAA TAAAAA T
110338207 TGCTTTAACA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.80, C:0.00, G:0.00, T:0.20
Consensus pattern (6 bp):
TAAAAA
Found at i:110349000 original size:7 final size:8
Alignment explanation
Indices: 110348977--110349009 Score: 50
Period size: 8 Copynumber: 4.1 Consensus size: 8
110348967 GATGACATTG
110348977 TTTATTTT
1 TTTATTTT
110348985 TATT-TTTT
1 T-TTATTTT
110348993 TTTATTTT
1 TTTATTTT
110349001 TTTATTTT
1 TTTATTTT
110349009 T
1 T
110349010 GGGTGTTAGT
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
7 2 0.09
8 19 0.83
9 2 0.09
ACGTcount: A:0.12, C:0.00, G:0.00, T:0.88
Consensus pattern (8 bp):
TTTATTTT
Found at i:110353093 original size:13 final size:12
Alignment explanation
Indices: 110353063--110353118 Score: 53
Period size: 12 Copynumber: 4.7 Consensus size: 12
110353053 AATGTGAAAC
*
110353063 AAAAAGAAATTG
1 AAAAAGAAGTTG
110353075 AAAAAGAAGTTG
1 AAAAAGAAGTTG
*
110353087 AAGAAAGAAG-AG
1 AA-AAAGAAGTTG
*
110353099 AAAATG-AGTTAG
1 AAAAAGAAGTT-G
110353111 AAAAAGAA
1 AAAAAGAA
110353119 ACAAAAGAAA
Statistics
Matches: 35, Mismatches: 5, Indels: 7
0.74 0.11 0.15
Matches are distributed among these distances:
10 2 0.06
11 3 0.09
12 22 0.63
13 8 0.23
ACGTcount: A:0.64, C:0.00, G:0.23, T:0.12
Consensus pattern (12 bp):
AAAAAGAAGTTG
Found at i:110354604 original size:432 final size:432
Alignment explanation
Indices: 110353801--110354667 Score: 1689
Period size: 432 Copynumber: 2.0 Consensus size: 432
110353791 GATCGTGTTG
110353801 ATGAACACTTAGATCGAAACGTGCTTGACTGTCCTATTTTATTTATTGATGATCTATCTGTTTTG
1 ATGAACACTTAGATCGAAACGTGCTTGACTGTCCTATTTTATTTATTGATGATCTATCTGTTTTG
*
110353866 ATGGTTGATAAAAAGATTCTTGTTTTTGATAATGCATGTGTGAGTGAATCTATAGACCATCGATT
66 ATGGTTGATAAAAAGATTCTTATTTTTGATAATGCATGTGTGAGTGAATCTATAGACCATCGATT
110353931 AATGCATGGTATGATTATGCAACTCTGTGAACCATGTAAATCTTTTCAAATACCTACTTGTGACG
131 AATGCATGGTATGATTATGCAACTCTGTGAACCATGTAAATCTTTTCAAATACCTACTTGTGACG
*
110353996 ATTATGTTTACCATTTGATTTATTACTTGCAATTTATTCATGGTTTGTGGGAACAATGTGAGACG
196 ATTATGTTTACCATTTGATTTATTACTTGCAATTTATTCATGGTTTGTGGGAACAATGTGAGACA
110354061 ACTGAATGCCTTAAAACATGTCCATCTTTGTTTCAAATATTTGACGAGGCAGTGGTGAGTAAATT
261 ACTGAATGCCTTAAAACATGTCCATCTTTGTTTCAAATATTTGACGAGGCAGTGGTGAGTAAATT
110354126 AGATTGTTTGCATGGTAATCTGAATCTGTCCATTCACATGCGTTATACCTGTTCTGTTATGCTTA
326 AGATTGTTTGCATGGTAATCTGAATCTGTCCATTCACATGCGTTATACCTGTTCTGTTATGCTTA
110354191 TGATTGGACTACAAGCTTGTTTCCGTTGCTATTTACTATCTC
391 TGATTGGACTACAAGCTTGTTTCCGTTGCTATTTACTATCTC
110354233 ATGAACACTTAGATCGAAACGTGCTTGACTGTCCTATTTTATTTATTGATGATCTATCTGTTTTG
1 ATGAACACTTAGATCGAAACGTGCTTGACTGTCCTATTTTATTTATTGATGATCTATCTGTTTTG
* *
110354298 ATGGTTGATAAAAATATTCTTATTTTTGATAATGCATGTGTGAGTGAATCTATAGACCGTCGATT
66 ATGGTTGATAAAAAGATTCTTATTTTTGATAATGCATGTGTGAGTGAATCTATAGACCATCGATT
*
110354363 AATGCATGGTATGATTATGCAACTCTGTGAACCATGTGAATCTTTTCAAATACCTACTTGTGACG
131 AATGCATGGTATGATTATGCAACTCTGTGAACCATGTAAATCTTTTCAAATACCTACTTGTGACG
110354428 ATTATGTTTACCATTTGATTTATTACTTGCAATTTATTCATGGTTTGTGGGAACAATGTGAGACA
196 ATTATGTTTACCATTTGATTTATTACTTGCAATTTATTCATGGTTTGTGGGAACAATGTGAGACA
110354493 ACTGAATGCCTTAAAACATGTCCATCTTTGTTTCAAATATTTGACGAGGCAGTGGTGAGTAAATT
261 ACTGAATGCCTTAAAACATGTCCATCTTTGTTTCAAATATTTGACGAGGCAGTGGTGAGTAAATT
110354558 AGATTGTTTGCATGGTAATCTGAATCTGTCCATTCACATGCGTTATACCTGTTCTGTTATGCTTA
326 AGATTGTTTGCATGGTAATCTGAATCTGTCCATTCACATGCGTTATACCTGTTCTGTTATGCTTA
110354623 TGATTGGACTACAAGCTTGTTTCCGTTGCTATTTACTATCTC
391 TGATTGGACTACAAGCTTGTTTCCGTTGCTATTTACTATCTC
110354665 ATG
1 ATG
110354668 GCTATTCTTC
Statistics
Matches: 430, Mismatches: 5, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
432 430 1.00
ACGTcount: A:0.27, C:0.15, G:0.19, T:0.39
Consensus pattern (432 bp):
ATGAACACTTAGATCGAAACGTGCTTGACTGTCCTATTTTATTTATTGATGATCTATCTGTTTTG
ATGGTTGATAAAAAGATTCTTATTTTTGATAATGCATGTGTGAGTGAATCTATAGACCATCGATT
AATGCATGGTATGATTATGCAACTCTGTGAACCATGTAAATCTTTTCAAATACCTACTTGTGACG
ATTATGTTTACCATTTGATTTATTACTTGCAATTTATTCATGGTTTGTGGGAACAATGTGAGACA
ACTGAATGCCTTAAAACATGTCCATCTTTGTTTCAAATATTTGACGAGGCAGTGGTGAGTAAATT
AGATTGTTTGCATGGTAATCTGAATCTGTCCATTCACATGCGTTATACCTGTTCTGTTATGCTTA
TGATTGGACTACAAGCTTGTTTCCGTTGCTATTTACTATCTC
Found at i:110355118 original size:291 final size:291
Alignment explanation
Indices: 110354594--110355177 Score: 1168
Period size: 291 Copynumber: 2.0 Consensus size: 291
110354584 TGTCCATTCA
110354594 CATGCGTTATACCTGTTCTGTTATGCTTATGATTGGACTACAAGCTTGTTTCCGTTGCTATTTAC
1 CATGCGTTATACCTGTTCTGTTATGCTTATGATTGGACTACAAGCTTGTTTCCGTTGCTATTTAC
110354659 TATCTCATGGCTATTCTTCTCAGTGGACTCAATTGCCATTAGTCCCGTTCGATAGAGGAAAGTCG
66 TATCTCATGGCTATTCTTCTCAGTGGACTCAATTGCCATTAGTCCCGTTCGATAGAGGAAAGTCG
110354724 AGTTCATTTGATTTTTCAGATTCGAGGACGAATCTTTTTGAGGAAGGGGGGAATGATACGAGTCA
131 AGTTCATTTGATTTTTCAGATTCGAGGACGAATCTTTTTGAGGAAGGGGGGAATGATACGAGTCA
110354789 CAAAAGCCCAAATTCTTGAAGGCGAGGCCCAATAAGAAGATTCCAAGCCCAATCAAGAAATCCAC
196 CAAAAGCCCAAATTCTTGAAGGCGAGGCCCAATAAGAAGATTCCAAGCCCAATCAAGAAATCCAC
110354854 CCATACTTAGTTGAAAATCAGGCCAAATTGT
261 CCATACTTAGTTGAAAATCAGGCCAAATTGT
110354885 CATGCGTTATACCTGTTCTGTTATGCTTATGATTGGACTACAAGCTTGTTTCCGTTGCTATTTAC
1 CATGCGTTATACCTGTTCTGTTATGCTTATGATTGGACTACAAGCTTGTTTCCGTTGCTATTTAC
110354950 TATCTCATGGCTATTCTTCTCAGTGGACTCAATTGCCATTAGTCCCGTTCGATAGAGGAAAGTCG
66 TATCTCATGGCTATTCTTCTCAGTGGACTCAATTGCCATTAGTCCCGTTCGATAGAGGAAAGTCG
110355015 AGTTCATTTGATTTTTCAGATTCGAGGACGAATCTTTTTGAGGAAGGGGGGAATGATACGAGTCA
131 AGTTCATTTGATTTTTCAGATTCGAGGACGAATCTTTTTGAGGAAGGGGGGAATGATACGAGTCA
110355080 CAAAAGCCCAAATTCTTGAAGGCGAGGCCCAATAAGAAGATTCCAAGCCCAATCAAGAAATCCAC
196 CAAAAGCCCAAATTCTTGAAGGCGAGGCCCAATAAGAAGATTCCAAGCCCAATCAAGAAATCCAC
110355145 CCATACTTAGTTGAAAATCAGGCCAAATTGT
261 CCATACTTAGTTGAAAATCAGGCCAAATTGT
110355176 CA
1 CA
110355178 AAGTGGCCCA
Statistics
Matches: 293, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
291 293 1.00
ACGTcount: A:0.29, C:0.20, G:0.21, T:0.30
Consensus pattern (291 bp):
CATGCGTTATACCTGTTCTGTTATGCTTATGATTGGACTACAAGCTTGTTTCCGTTGCTATTTAC
TATCTCATGGCTATTCTTCTCAGTGGACTCAATTGCCATTAGTCCCGTTCGATAGAGGAAAGTCG
AGTTCATTTGATTTTTCAGATTCGAGGACGAATCTTTTTGAGGAAGGGGGGAATGATACGAGTCA
CAAAAGCCCAAATTCTTGAAGGCGAGGCCCAATAAGAAGATTCCAAGCCCAATCAAGAAATCCAC
CCATACTTAGTTGAAAATCAGGCCAAATTGT
Found at i:110365982 original size:28 final size:28
Alignment explanation
Indices: 110365944--110366010 Score: 91
Period size: 28 Copynumber: 2.4 Consensus size: 28
110365934 TCCATGTTAT
* * *
110365944 TTTATGTATATATTTTCTTTTAAATCTA
1 TTTATGTATATATATCCTTTCAAATCTA
*
110365972 TTTATATATATATATCCTTTCAAATCTA
1 TTTATGTATATATATCCTTTCAAATCTA
110366000 -TTATGTATATA
1 TTTATGTATATA
110366011 GTTTATTCCT
Statistics
Matches: 34, Mismatches: 5, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
27 10 0.29
28 24 0.71
ACGTcount: A:0.33, C:0.09, G:0.03, T:0.55
Consensus pattern (28 bp):
TTTATGTATATATATCCTTTCAAATCTA
Found at i:110369534 original size:8 final size:8
Alignment explanation
Indices: 110369523--110369552 Score: 51
Period size: 8 Copynumber: 3.8 Consensus size: 8
110369513 TTTTTTCACA
110369523 TAATTATT
1 TAATTATT
*
110369531 TAATAATT
1 TAATTATT
110369539 TAATTATT
1 TAATTATT
110369547 TAATTA
1 TAATTA
110369553 ACAAATATCT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
8 20 1.00
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (8 bp):
TAATTATT
Found at i:110380605 original size:25 final size:24
Alignment explanation
Indices: 110380577--110380628 Score: 59
Period size: 25 Copynumber: 2.1 Consensus size: 24
110380567 TGCCAAAAAC
* *
110380577 AAAATAAAAGAAAAAATAGATTATA
1 AAAATAAAACAAAAAATA-ATAATA
* *
110380602 AAAATTAAACTAAAAATAATAATA
1 AAAATAAAACAAAAAATAATAATA
110380626 AAA
1 AAA
110380629 TGTAATAATA
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
24 8 0.35
25 15 0.65
ACGTcount: A:0.73, C:0.02, G:0.04, T:0.21
Consensus pattern (24 bp):
AAAATAAAACAAAAAATAATAATA
Found at i:110380637 original size:16 final size:16
Alignment explanation
Indices: 110380616--110380646 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
110380606 TTAAACTAAA
*
110380616 AATAATAATAAAATGT
1 AATAATAAAAAAATGT
110380632 AATAATAAAAAAATG
1 AATAATAAAAAAATG
110380647 GTGAAATTAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.68, C:0.00, G:0.06, T:0.26
Consensus pattern (16 bp):
AATAATAAAAAAATGT
Found at i:110381756 original size:30 final size:30
Alignment explanation
Indices: 110381716--110381773 Score: 73
Period size: 30 Copynumber: 1.9 Consensus size: 30
110381706 CACGGACTGG
*
110381716 CACATGGGCGTATGGC-CAGCCCGTGTGGCT
1 CACACGGGCGTAT-GCTCAGCCCGTGTGGCT
* *
110381746 CACACGGGCGTGTGCTCAGCCTGTGTGG
1 CACACGGGCGTATGCTCAGCCCGTGTGG
110381774 GAAAAGGCTT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
29 2 0.08
30 22 0.92
ACGTcount: A:0.12, C:0.29, G:0.38, T:0.21
Consensus pattern (30 bp):
CACACGGGCGTATGCTCAGCCCGTGTGGCT
Found at i:110382138 original size:21 final size:21
Alignment explanation
Indices: 110382093--110382138 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 21
110382083 TAAAGTAGTT
* *
110382093 ATATATTATTTTTATAATATT
1 ATATATGATTTTTATAATATC
110382114 ATATATGATTTTTATTAAT-TC
1 ATATATGATTTTTA-TAATATC
110382135 ATAT
1 ATAT
110382139 TTTAATAATA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
21 18 0.82
22 4 0.18
ACGTcount: A:0.37, C:0.02, G:0.02, T:0.59
Consensus pattern (21 bp):
ATATATGATTTTTATAATATC
Found at i:110385635 original size:46 final size:44
Alignment explanation
Indices: 110385538--110385646 Score: 139
Period size: 46 Copynumber: 2.4 Consensus size: 44
110385528 TATTACAACA
110385538 TCTATTCCATTCAACCAAACACAAGAATACAATTACAACTCTAT
1 TCTATTCCATTCAACCAAACACAAGAATACAATTACAACTCTAT
* * *
110385582 TCCATTCCATTCAACCAAACA-ACCGAATTACTGATTACAACTCTAT
1 TCTATTCCATTCAACCAAACACA-AGAA-TAC-AATTACAACTCTAT
* *
110385628 TCTATTCCCTCCAACCAAA
1 TCTATTCCATTCAACCAAA
110385647 TGTGCCCTTA
Statistics
Matches: 56, Mismatches: 6, Indels: 4
0.85 0.09 0.06
Matches are distributed among these distances:
43 1 0.02
44 23 0.41
45 3 0.05
46 29 0.52
ACGTcount: A:0.39, C:0.31, G:0.03, T:0.28
Consensus pattern (44 bp):
TCTATTCCATTCAACCAAACACAAGAATACAATTACAACTCTAT
Found at i:110390118 original size:13 final size:13
Alignment explanation
Indices: 110390100--110390131 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
110390090 ATTTATAAAG
110390100 TAAATTAAATAAT
1 TAAATTAAATAAT
*
110390113 TAAATTAAATTAT
1 TAAATTAAATAAT
110390126 TAAATT
1 TAAATT
110390132 GATTAATCAT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (13 bp):
TAAATTAAATAAT
Found at i:110390845 original size:96 final size:98
Alignment explanation
Indices: 110390728--110390968 Score: 308
Period size: 96 Copynumber: 2.5 Consensus size: 98
110390718 GTTTTTAAAT
* * * ** *
110390728 TTTAAGGTTTTAAAGAAAAAAATTAAATAAATTAGGGTTTAGTGTTTGTTAATTAAATTAATTAC
1 TTTAAGGTTTTTAAGAAAAAAATTAAATAAATTAGAGTTTAGGGTTACTTAAGTAAATTAATTA-
* *
110390793 T-AATTTT-AAAAAATTAGATTA-TAGTTTAGTG
65 TAAATTTTAAAAAAATTAGATTAGGAGTTTAGGG
* *
110390824 TTTATGGTTTTTAAGAAAAAAATTAAATAAATTAGAGTTTAGGGTTACTTGAGTAAATTAATTAT
1 TTTAAGGTTTTTAAGAAAAAAATTAAATAAATTAGAGTTTAGGGTTACTTAAGTAAATTAATTAT
*
110390889 AAATTTTAAAAAAATTAGATTAGGATTTTAGGG
66 AAATTTTAAAAAAATTAGATTAGGAGTTTAGGG
* * * *
110390922 TTTAGGGTTTTTAAGAAAAAAAATCAAATAAATTAGAATTTGGGGTT
1 TTTAAGGTTTTTAAG-AAAAAAATTAAATAAATTAGAGTTTAGGGTT
110390969 TAGGGTAACT
Statistics
Matches: 126, Mismatches: 15, Indels: 5
0.86 0.10 0.03
Matches are distributed among these distances:
95 1 0.01
96 62 0.49
97 14 0.11
98 21 0.17
99 28 0.22
ACGTcount: A:0.43, C:0.01, G:0.16, T:0.40
Consensus pattern (98 bp):
TTTAAGGTTTTTAAGAAAAAAATTAAATAAATTAGAGTTTAGGGTTACTTAAGTAAATTAATTAT
AAATTTTAAAAAAATTAGATTAGGAGTTTAGGG
Found at i:110391384 original size:126 final size:125
Alignment explanation
Indices: 110391013--110391549 Score: 797
Period size: 126 Copynumber: 4.3 Consensus size: 125
110391003 AAAAGCTTCT
*
110391013 ACGTGGACGCTCTTTTGCTACAGTAGTCTCTGAAAAATAAATTTGAGAAGACGTGTCTGCGCAAA
1 ACGTGGACGCTCTTTTGCTACAGTAGTCTCTGAAAAATAATTTTGAGAAGACGTGTCTGCGCAAA
* *
110391078 TAGTGTCAAAAATGCTTCAAGCATGATGCATTGTCAGCAAAAGTACTGAAAGAAGCTCCC
66 TAGTGTCAAAAACGCTTCAAGCAGGATGCATTGTCAGCAAAAGTACTGAAAGAAGCTCCC
* * ***
110391138 ACGTGGACGCTCTTTTGCTACAGTAGTATCTGAAAAATAATTTTGAGAAGACGTGTTTGTTTAAA
1 ACGTGGACGCTCTTTTGCTACAGTAGTCTCTGAAAAATAATTTTGAGAAGACGTGTCTGCGCAAA
* * * *
110391203 TAGTGTAAAAAACGCTTCAAGTAGGATGTATTGTCAGCAAAAGTACTGAAAGAAGCTTCC
66 TAGTGTCAAAAACGCTTCAAGCAGGATGCATTGTCAGCAAAAGTACTGAAAGAAGCTCCC
* *
110391263 ACGTGGACGCTCTTTTGCTACAGTAGTCTTTGAAAAAATAATTTTGAGAAGACATGTCTGCGCAA
1 ACGTGGACGCTCTTTTGCTACAGTAGTCTCTG-AAAAATAATTTTGAGAAGACGTGTCTGCGCAA
* * * * *
110391328 ATAGTGGT-AAAAACGCTTCAAGCAGGATGCATTTTCAGTAAAATTATTGGAAGAAGCTCCC
65 ATAGT-GTCAAAAACGCTTCAAGCAGGATGCATTGTCAGCAAAAGTACTGAAAGAAGCTCCC
* * * **
110391389 ACGTGGATGCTCTTTTGCTACAATGGTCTCTGAAAAAATAATTTTGAGAAGACGTGTCTGCATAA
1 ACGTGGACGCTCTTTTGCTACAGTAGTCTCTG-AAAAATAATTTTGAGAAGACGTGTCTGCGCAA
*
110391454 ATAGTGTCAAAAACGCTTCAAGCAGGATGCATTTTCAGCAAAAGTACTGAAAGAAGCTCCC
65 ATAGTGTCAAAAACGCTTCAAGCAGGATGCATTGTCAGCAAAAGTACTGAAAGAAGCTCCC
* *
110391515 ACGTGGACGCTCTTTTGCTACAGTGGTTTCTGAAA
1 ACGTGGACGCTCTTTTGCTACAGTAGTCTCTGAAA
110391550 TAACTTGGGC
Statistics
Matches: 368, Mismatches: 41, Indels: 6
0.89 0.10 0.01
Matches are distributed among these distances:
125 148 0.40
126 218 0.59
127 2 0.01
ACGTcount: A:0.33, C:0.17, G:0.22, T:0.28
Consensus pattern (125 bp):
ACGTGGACGCTCTTTTGCTACAGTAGTCTCTGAAAAATAATTTTGAGAAGACGTGTCTGCGCAAA
TAGTGTCAAAAACGCTTCAAGCAGGATGCATTGTCAGCAAAAGTACTGAAAGAAGCTCCC
Found at i:110394440 original size:18 final size:18
Alignment explanation
Indices: 110394388--110394683 Score: 134
Period size: 18 Copynumber: 16.1 Consensus size: 18
110394378 TCATTAACAC
* *
110394388 TCAG-AATAATTATTTAT
1 TCAGTAATAATCAGTTAT
* * *
110394405 TTAGTAACAGTCAGTTAT
1 TCAGTAATAATCAGTTAT
* *
110394423 TTAGTAATAATCAATTAT
1 TCAGTAATAATCAGTTAT
* *
110394441 TCAATAATAACCAGTTAT
1 TCAGTAATAATCAGTTAT
110394459 TCAGTATCGATTAATTGATCAGTTAT
1 TCAGTA---A-T-A---ATCAGTTAT
* * * *
110394485 CCAGTAACAGTCAATTAT
1 TCAGTAATAATCAGTTAT
*
110394503 TCAGTAA-AATCAGATAT
1 TCAGTAATAATCAGTTAT
* *
110394520 TCAGTAACTATTAAGTTAT
1 TCAGTAA-TAATCAGTTAT
* ** *
110394539 TCAATAGCAGTCA-TTCAT
1 TCAGTAATAATCAGTT-AT
* *
110394557 TCAGTGACAATCAGTTAT
1 TCAGTAATAATCAGTTAT
*
110394575 TCAGTAATAATCAATTAT
1 TCAGTAATAATCAGTTAT
*
110394593 TCAGTAATATTCAGTTAT
1 TCAGTAATAATCAGTTAT
* * *
110394611 TCAGTAACAGTCTA-ATAT
1 TCAGTAATAATC-AGTTAT
* * * *
110394629 CCAGTAACAGTCAATTA-
1 TCAGTAATAATCAGTTAT
* * * *
110394646 TCCGATAACAGTCAATTAT
1 TCAG-TAATAATCAGTTAT
110394665 TCAGTAATAATCAGTTAT
1 TCAGTAATAATCAGTTAT
110394683 T
1 T
110394684 TTATACCTTT
Statistics
Matches: 212, Mismatches: 50, Indels: 33
0.72 0.17 0.11
Matches are distributed among these distances:
17 22 0.10
18 154 0.73
19 18 0.08
21 2 0.01
22 1 0.00
23 2 0.01
26 13 0.06
ACGTcount: A:0.38, C:0.14, G:0.11, T:0.37
Consensus pattern (18 bp):
TCAGTAATAATCAGTTAT
Found at i:110394595 original size:36 final size:36
Alignment explanation
Indices: 110394476--110394683 Score: 156
Period size: 36 Copynumber: 5.8 Consensus size: 36
110394466 CGATTAATTG
* * * *
110394476 ATCAGTTATCCAGTAACAGTCAATTATTCAGTAA-A
1 ATCAATTATTCAGTAACAATCAGTTATTCAGTAACA
* * * *
110394511 ATCAGA-TATTCAGTAACTATTAAGTTATTCAATAGCA
1 ATCA-ATTATTCAGTAAC-AATCAGTTATTCAGTAACA
* * *
110394548 GTC-ATTCATTCAGTGACAATCAGTTATTCAGTAATA
1 ATCAATT-ATTCAGTAACAATCAGTTATTCAGTAACA
* *
110394584 ATCAATTATTCAGTAATATTCAGTTATTCAGTAACA
1 ATCAATTATTCAGTAACAATCAGTTATTCAGTAACA
* * * * *
110394620 GTCTAA-TATCCAGTAACAGTCAATTA-TCCGATAACA
1 ATC-AATTATTCAGTAACAATCAGTTATTCAG-TAACA
* *
110394656 GTCAATTATTCAGTAATAATCAGTTATT
1 ATCAATTATTCAGTAACAATCAGTTATT
110394684 TTATACCTTT
Statistics
Matches: 134, Mismatches: 29, Indels: 18
0.74 0.16 0.10
Matches are distributed among these distances:
35 20 0.15
36 96 0.72
37 18 0.13
ACGTcount: A:0.38, C:0.16, G:0.11, T:0.35
Consensus pattern (36 bp):
ATCAATTATTCAGTAACAATCAGTTATTCAGTAACA
Found at i:110394622 original size:72 final size:71
Alignment explanation
Indices: 110394482--110394683 Score: 221
Period size: 72 Copynumber: 2.8 Consensus size: 71
110394472 ATTGATCAGT
* * *
110394482 TATCCAGTAACAGTCAATTATTCAGTAAAATCAGA-TATTCAGTAACTATTAAGTTATTCAATAG
1 TATCCAGTAACAATCAATTATTCAGTAAAATCA-ATTATTCAGTAA-TATTCAGTTATTCAATAA
*
110394546 CAGTC-AT
64 CAGTCTAA
* * * *
110394553 TCATTCAGTGACAATCAGTTATTCAGTAATAATCAATTATTCAGTAATATTCAGTTATTCAGTAA
1 T-ATCCAGTAACAATCAATTATTCAGTAA-AATCAATTATTCAGTAATATTCAGTTATTCAATAA
110394618 CAGTCTAA
64 CAGTCTAA
* * * *
110394626 TATCCAGTAACAGTCAATTA-TCCGATAACAGTCAATTATTCAGTAATAATCAGTTATT
1 TATCCAGTAACAATCAATTATTCAG-TAA-AATCAATTATTCAGTAATATTCAGTTATT
110394684 TTATACCTTT
Statistics
Matches: 110, Mismatches: 16, Indels: 9
0.81 0.12 0.07
Matches are distributed among these distances:
71 4 0.04
72 89 0.81
73 17 0.15
ACGTcount: A:0.38, C:0.16, G:0.11, T:0.35
Consensus pattern (71 bp):
TATCCAGTAACAATCAATTATTCAGTAAAATCAATTATTCAGTAATATTCAGTTATTCAATAACA
GTCTAA
Found at i:110394967 original size:45 final size:45
Alignment explanation
Indices: 110394863--110394967 Score: 165
Period size: 45 Copynumber: 2.3 Consensus size: 45
110394853 ATCCAGAATA
* *
110394863 GTAACAGTAACAGTAACAATATTTGACACACACAGTGCCGAATCG
1 GTAACAGTAACAGTAACAATATTCGACACACAAAGTGCCGAATCG
**
110394908 GTAATGGTAACAGTAACAATATTCGACACACAAAGTGCCGAATCG
1 GTAACAGTAACAGTAACAATATTCGACACACAAAGTGCCGAATCG
*
110394953 GTAACAGTAGCAGTA
1 GTAACAGTAACAGTA
110394968 GCGGTAACAG
Statistics
Matches: 53, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
45 53 1.00
ACGTcount: A:0.40, C:0.20, G:0.20, T:0.20
Consensus pattern (45 bp):
GTAACAGTAACAGTAACAATATTCGACACACAAAGTGCCGAATCG
Found at i:110395433 original size:6 final size:5
Alignment explanation
Indices: 110395376--110395417 Score: 57
Period size: 5 Copynumber: 8.2 Consensus size: 5
110395366 AATTAATCAT
* *
110395376 AATTC CATTC CATTC AATTC AATTC AATTC AATTC AAATTC A
1 AATTC AATTC AATTC AATTC AATTC AATTC AATTC -AATTC A
110395418 CCCTTCAATT
Statistics
Matches: 34, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
5 29 0.85
6 5 0.15
ACGTcount: A:0.38, C:0.24, G:0.00, T:0.38
Consensus pattern (5 bp):
AATTC
Found at i:110396615 original size:4 final size:4
Alignment explanation
Indices: 110396606--110396641 Score: 54
Period size: 4 Copynumber: 8.5 Consensus size: 4
110396596 CCTTTTCTCC
110396606 CTTT CTTT CTTT CTTT CCTTT CTTT CCTTT CTTT CT
1 CTTT CTTT CTTT CTTT -CTTT CTTT -CTTT CTTT CT
110396642 CCCCTGTTCT
Statistics
Matches: 30, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
4 22 0.73
5 8 0.27
ACGTcount: A:0.00, C:0.31, G:0.00, T:0.69
Consensus pattern (4 bp):
CTTT
Found at i:110396626 original size:9 final size:9
Alignment explanation
Indices: 110396605--110396640 Score: 65
Period size: 9 Copynumber: 4.1 Consensus size: 9
110396595 CCCTTTTCTC
110396605 CCTTTCTTT
1 CCTTTCTTT
110396614 -CTTTCTTT
1 CCTTTCTTT
110396622 CCTTTCTTT
1 CCTTTCTTT
110396631 CCTTTCTTT
1 CCTTTCTTT
110396640 C
1 C
110396641 TCCCCTGTTC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
8 8 0.31
9 18 0.69
ACGTcount: A:0.00, C:0.33, G:0.00, T:0.67
Consensus pattern (9 bp):
CCTTTCTTT
Found at i:110396626 original size:13 final size:13
Alignment explanation
Indices: 110396605--110396641 Score: 58
Period size: 13 Copynumber: 2.8 Consensus size: 13
110396595 CCCTTTTCTC
110396605 CCTTTCTTTCTTT
1 CCTTTCTTTCTTT
110396618 -CTTTCCTTTCTTT
1 CCTTT-CTTTCTTT
110396631 CCTTTCTTTCT
1 CCTTTCTTTCT
110396642 CCCCTGTTCT
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
12 4 0.18
13 14 0.64
14 4 0.18
ACGTcount: A:0.00, C:0.32, G:0.00, T:0.68
Consensus pattern (13 bp):
CCTTTCTTTCTTT
Found at i:110396702 original size:9 final size:9
Alignment explanation
Indices: 110396684--110396718 Score: 54
Period size: 9 Copynumber: 4.0 Consensus size: 9
110396674 TTTCTTTTTC
*
110396684 ATTTCTTTT
1 ATTTCATTT
110396693 ATTTCATTT
1 ATTTCATTT
110396702 ATTTC-TTT
1 ATTTCATTT
110396710 ATTTCATTT
1 ATTTCATTT
110396719 CTTTATTTTA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
8 8 0.33
9 16 0.67
ACGTcount: A:0.17, C:0.11, G:0.00, T:0.71
Consensus pattern (9 bp):
ATTTCATTT
Found at i:110396710 original size:17 final size:18
Alignment explanation
Indices: 110396684--110396730 Score: 69
Period size: 17 Copynumber: 2.7 Consensus size: 18
110396674 TTTCTTTTTC
110396684 ATTTCTTTTATTTCATTT
1 ATTTCTTTTATTTCATTT
110396702 ATTTC-TTTATTTCATTT
1 ATTTCTTTTATTTCATTT
* *
110396719 CTTTATTTTATT
1 ATTTCTTTTATT
110396731 ATTAAACTAT
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
17 15 0.58
18 11 0.42
ACGTcount: A:0.17, C:0.11, G:0.00, T:0.72
Consensus pattern (18 bp):
ATTTCTTTTATTTCATTT
Found at i:110396720 original size:13 final size:13
Alignment explanation
Indices: 110396684--110396726 Score: 52
Period size: 13 Copynumber: 3.3 Consensus size: 13
110396674 TTTCTTTTTC
* *
110396684 ATTTCTTTTATTT
1 ATTTCATTTCTTT
110396697 CATTT-ATTTCTTT
1 -ATTTCATTTCTTT
110396710 ATTTCATTTCTTT
1 ATTTCATTTCTTT
110396723 ATTT
1 ATTT
110396727 TATTATTAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
12 4 0.15
13 18 0.69
14 4 0.15
ACGTcount: A:0.16, C:0.12, G:0.00, T:0.72
Consensus pattern (13 bp):
ATTTCATTTCTTT
Found at i:110396753 original size:23 final size:23
Alignment explanation
Indices: 110396725--110396777 Score: 65
Period size: 23 Copynumber: 2.3 Consensus size: 23
110396715 ATTTCTTTAT
110396725 TTTATTA-TTAAACTAT-TATAATA
1 TTTATTATTTAAAC-ATGTAT-ATA
*
110396748 TTTATTATTTATACATGTATATA
1 TTTATTATTTAAACATGTATATA
110396771 TTTATTA
1 TTTATTA
110396778 ATACACATGT
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
23 19 0.70
24 8 0.30
ACGTcount: A:0.38, C:0.04, G:0.02, T:0.57
Consensus pattern (23 bp):
TTTATTATTTAAACATGTATATA
Found at i:110396788 original size:22 final size:23
Alignment explanation
Indices: 110396745--110396797 Score: 65
Period size: 22 Copynumber: 2.3 Consensus size: 23
110396735 AACTATTATA
* *
110396745 ATATTTATTATTTATACATGTAT
1 ATATTTATTATATACACATGTAT
110396768 ATATTTATTA-ATACACATGTAT
1 ATATTTATTATATACACATGTAT
110396790 -TAATTTAT
1 AT-ATTTAT
110396798 CACCTTACAC
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
21 1 0.04
22 16 0.59
23 10 0.37
ACGTcount: A:0.38, C:0.06, G:0.04, T:0.53
Consensus pattern (23 bp):
ATATTTATTATATACACATGTAT
Found at i:110398205 original size:116 final size:116
Alignment explanation
Indices: 110398030--110398760 Score: 1273
Period size: 116 Copynumber: 6.3 Consensus size: 116
110398020 TTTATATTTT
* * *
110398030 ATTACATGAAATAATATAAAAATATTCAAAATATTGCTTTATTTAAAATAATTTTCATTTTATTA
1 ATTACATGAAATAATATAAAAATATTCAAAATGTTGCCTTATTTAAAATAATTTCCATTTTATTA
* * *
110398095 AAAATATAAAAGTAAATTATAATTACTTTATTTAAAACAACCTTTTATATT
66 AAAATATAAAAGTAAATTACAATTACTTTATTTAAAACAACCTTTTATCTA
* *
110398146 ATCACATGAAATAATATAAAAATATTCAAAATGTTGCCTTATTTAAAATAATCTCCATTTTATTA
1 ATTACATGAAATAATATAAAAATATTCAAAATGTTGCCTTATTTAAAATAATTTCCATTTTATTA
* *
110398211 GAAATATAAAAGTAAATTACAATTACTTTATTTAAAATAACCTTTTATCTA
66 AAAATATAAAAGTAAATTACAATTACTTTATTTAAAACAACCTTTTATCTA
* *
110398262 ATTACATGAAATAATATAAAAATATTTAAAATGTTGCCTTATTTAAAATAATTTCTATTTTATTA
1 ATTACATGAAATAATATAAAAATATTCAAAATGTTGCCTTATTTAAAATAATTTCCATTTTATTA
*
110398327 GAAATATAAAAGTAAATTACAATTACTTTATTTAAAACAACCTTTTATCTA
66 AAAATATAAAAGTAAATTACAATTACTTTATTTAAAACAACCTTTTATCTA
*
110398378 ATTACATGAAATAATATAAAAATATTCAAAATGTTGCCTTATTTAAAATAATTTCTATTTTATTA
1 ATTACATGAAATAATATAAAAATATTCAAAATGTTGCCTTATTTAAAATAATTTCCATTTTATTA
*
110398443 AAAATATAAAAGTAAATTACAATTACTTTATTTAAAACAACATTTTATCTA
66 AAAATATAAAAGTAAATTACAATTACTTTATTTAAAACAACCTTTTATCTA
*
110398494 ATTACATGAAATAATATAAAAATATTCAAAATGTTGCCTTATTTAAAATAATTTCTATTTTATTA
1 ATTACATGAAATAATATAAAAATATTCAAAATGTTGCCTTATTTAAAATAATTTCCATTTTATTA
*
110398559 AAAATATAAAAGTAAATTATAATTACTTTATTTAAAACAACCTTTTATCTA
66 AAAATATAAAAGTAAATTACAATTACTTTATTTAAAACAACCTTTTATCTA
* *
110398610 ATTAAATGAAATAATATAAAAATAATCAAAATGTTGCCTTATTTAAAATAATTTCCATTTTATTA
1 ATTACATGAAATAATATAAAAATATTCAAAATGTTGCCTTATTTAAAATAATTTCCATTTTATTA
*
110398675 AAAATATAAAAGTAAATTACAATTACTTTATTTAAAACAACATTTTATCTA
66 AAAATATAAAAGTAAATTACAATTACTTTATTTAAAACAACCTTTTATCTA
*
110398726 ATTACATGAAATAATATAAAAAGATTCAAAATGTT
1 ATTACATGAAATAATATAAAAATATTCAAAATGTT
110398761 TGTACAAATA
Statistics
Matches: 587, Mismatches: 28, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
116 587 1.00
ACGTcount: A:0.47, C:0.09, G:0.04, T:0.40
Consensus pattern (116 bp):
ATTACATGAAATAATATAAAAATATTCAAAATGTTGCCTTATTTAAAATAATTTCCATTTTATTA
AAAATATAAAAGTAAATTACAATTACTTTATTTAAAACAACCTTTTATCTA
Found at i:110399172 original size:18 final size:18
Alignment explanation
Indices: 110399146--110399188 Score: 59
Period size: 18 Copynumber: 2.4 Consensus size: 18
110399136 GACTAGAAAA
* * *
110399146 AGGAAACATATAAGGGTT
1 AGGATACATAAAAGGGCT
110399164 AGGATACATAAAAGGGCT
1 AGGATACATAAAAGGGCT
110399182 AGGATAC
1 AGGATAC
110399189 GTACCTGGCA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.44, C:0.09, G:0.28, T:0.19
Consensus pattern (18 bp):
AGGATACATAAAAGGGCT
Found at i:110400933 original size:15 final size:15
Alignment explanation
Indices: 110400913--110400943 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
110400903 TTTTTATTTT
*
110400913 AAAAAATAAATTTAG
1 AAAAAATAAAATTAG
110400928 AAAAAATAAAATTAG
1 AAAAAATAAAATTAG
110400943 A
1 A
110400944 GCTTTTTTGA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.71, C:0.00, G:0.06, T:0.23
Consensus pattern (15 bp):
AAAAAATAAAATTAG
Found at i:110401027 original size:11 final size:11
Alignment explanation
Indices: 110400970--110401021 Score: 54
Period size: 11 Copynumber: 4.9 Consensus size: 11
110400960 TAACAAGAGT
*
110400970 TTTGAGAGGAA
1 TTTGAGAGAAA
* *
110400981 TTTAATAGAAA
1 TTTGAGAGAAA
110400992 TTTGAGAG--A
1 TTTGAGAGAAA
*
110401001 TTAGAGAGAAA
1 TTTGAGAGAAA
110401012 TTTGAGAGAA
1 TTTGAGAGAA
110401022 TATTGAAAGA
Statistics
Matches: 32, Mismatches: 7, Indels: 4
0.74 0.16 0.09
Matches are distributed among these distances:
9 8 0.25
11 24 0.75
ACGTcount: A:0.44, C:0.00, G:0.27, T:0.29
Consensus pattern (11 bp):
TTTGAGAGAAA
Found at i:110406921 original size:45 final size:46
Alignment explanation
Indices: 110406871--110407096 Score: 323
Period size: 45 Copynumber: 5.0 Consensus size: 46
110406861 AGTGTGCTCT
*
110406871 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCAT-GCAGC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
110406916 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAA-
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
110406961 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* ***
110407007 GTGATATGAAATGAACAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* * * * * *
110407053 ATGACA-GAAAATGAGTAAGACCATAGTTGAAAGACACTATGGCA
1 CTGATATG-AAATGTGTAAGACCATGGTTGAAAGATACCATGGCA
110407097 TCATGTCAAA
Statistics
Matches: 166, Mismatches: 12, Indels: 5
0.91 0.07 0.03
Matches are distributed among these distances:
45 86 0.52
46 80 0.48
ACGTcount: A:0.39, C:0.15, G:0.24, T:0.22
Consensus pattern (46 bp):
CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
Found at i:110407051 original size:91 final size:91
Alignment explanation
Indices: 110406871--110407096 Score: 330
Period size: 91 Copynumber: 2.5 Consensus size: 91
110406861 AGTGTGCTCT
* ***
110406871 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCAT-GCAGCCTGATATGAAATGTGTAAG
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAATGAACAAG
110406935 ACCATGGTTGAAAGATACCATGGCAA
66 ACCATGGTTGAAAGATACCATGGCAA
*
110406961 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACGTGATATGAAATGAACAAG
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAATGAACAAG
110407026 ACCATGGTTGAAAGATACCATGGCAA
66 ACCATGGTTGAAAGATACCATGGCAA
* * * * *
110407052 CATGACA-GAAAATGAGTAAGACCATAGTTGAAAGACACTATGGCA
1 C-TGATATG-AAATGTGTAAGACCATGGTTGAAAGATACCATGGCA
110407097 TCATGTCAAA
Statistics
Matches: 123, Mismatches: 10, Indels: 4
0.90 0.07 0.03
Matches are distributed among these distances:
90 40 0.33
91 47 0.38
92 36 0.29
ACGTcount: A:0.39, C:0.15, G:0.24, T:0.22
Consensus pattern (91 bp):
CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAATGAACAAG
ACCATGGTTGAAAGATACCATGGCAA
Found at i:110412735 original size:21 final size:21
Alignment explanation
Indices: 110412709--110412750 Score: 84
Period size: 21 Copynumber: 2.0 Consensus size: 21
110412699 ACTACTCAGC
110412709 TCATAATGAACTTTCCTCTTT
1 TCATAATGAACTTTCCTCTTT
110412730 TCATAATGAACTTTCCTCTTT
1 TCATAATGAACTTTCCTCTTT
110412751 CTCTTCCTCG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.24, C:0.24, G:0.05, T:0.48
Consensus pattern (21 bp):
TCATAATGAACTTTCCTCTTT
Found at i:110414659 original size:13 final size:13
Alignment explanation
Indices: 110414641--110414668 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
110414631 TAATTCAATC
110414641 AACCTCACGAGTT
1 AACCTCACGAGTT
110414654 AACCTCACGAGTT
1 AACCTCACGAGTT
110414667 AA
1 AA
110414669 TATCTAATAC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.36, C:0.29, G:0.14, T:0.21
Consensus pattern (13 bp):
AACCTCACGAGTT
Found at i:110414713 original size:39 final size:39
Alignment explanation
Indices: 110414657--110414734 Score: 138
Period size: 39 Copynumber: 2.0 Consensus size: 39
110414647 ACGAGTTAAC
* *
110414657 CTCACGAGTTAATATCTAATACGTAGAAAAAGTTTTTTT
1 CTCACGAGTTAACATCTAATACGAAGAAAAAGTTTTTTT
110414696 CTCACGAGTTAACATCTAATACGAAGAAAAAGTTTTTTT
1 CTCACGAGTTAACATCTAATACGAAGAAAAAGTTTTTTT
110414735 TTAACTAAAA
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
39 37 1.00
ACGTcount: A:0.37, C:0.14, G:0.13, T:0.36
Consensus pattern (39 bp):
CTCACGAGTTAACATCTAATACGAAGAAAAAGTTTTTTT
Found at i:110415114 original size:14 final size:14
Alignment explanation
Indices: 110415095--110415122 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
110415085 TATTTTATGG
110415095 CATTTTTTCATTTT
1 CATTTTTTCATTTT
110415109 CATTTTTTCATTTT
1 CATTTTTTCATTTT
110415123 TTTATATTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.14, C:0.14, G:0.00, T:0.71
Consensus pattern (14 bp):
CATTTTTTCATTTT
Found at i:110415125 original size:9 final size:8
Alignment explanation
Indices: 110415095--110415135 Score: 50
Period size: 8 Copynumber: 5.4 Consensus size: 8
110415085 TATTTTATGG
110415095 CATTTTTT
1 CATTTTTT
110415103 CA--TTTT
1 CATTTTTT
110415109 CATTTTTT
1 CATTTTTT
110415117 CATTTTTT
1 CATTTTTT
* *
110415125 TATATTTT
1 CATTTTTT
110415133 CAT
1 CAT
110415136 ATAATTTTGG
Statistics
Matches: 28, Mismatches: 3, Indels: 4
0.80 0.09 0.11
Matches are distributed among these distances:
6 6 0.21
8 22 0.79
ACGTcount: A:0.17, C:0.12, G:0.00, T:0.71
Consensus pattern (8 bp):
CATTTTTT
Found at i:110415354 original size:20 final size:20
Alignment explanation
Indices: 110415327--110415364 Score: 51
Period size: 21 Copynumber: 1.9 Consensus size: 20
110415317 AAAAACTTAC
*
110415327 AAAGGAAT-GCAAAAAAAGA
1 AAAGGAATAACAAAAAAAGA
110415346 AAAGAGAATAACAAAAAAA
1 AAAG-GAATAACAAAAAAA
110415365 AATTATAAGA
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
19 4 0.25
20 4 0.25
21 8 0.50
ACGTcount: A:0.74, C:0.05, G:0.16, T:0.05
Consensus pattern (20 bp):
AAAGGAATAACAAAAAAAGA
Found at i:110415501 original size:21 final size:21
Alignment explanation
Indices: 110415462--110415501 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
110415452 AATTCGAAAG
*
110415462 CATATAAAAAAATCGTGAGGA
1 CATATAAAAAAATCATGAGGA
*
110415483 CATATAAAAAAATTATGAG
1 CATATAAAAAAATCATGAG
110415502 ATGAGTACTA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.55, C:0.07, G:0.15, T:0.23
Consensus pattern (21 bp):
CATATAAAAAAATCATGAGGA
Found at i:110420212 original size:49 final size:49
Alignment explanation
Indices: 110420130--110420374 Score: 249
Period size: 49 Copynumber: 4.9 Consensus size: 49
110420120 TAGCCAAAGC
* * * *
110420130 TATCTGGTACACATATTAGCCTGTACTTAGTACTACACATGCGACCAAT
1 TATCCGGTACACATAGTAGCCTGCACTTAGTACTACACACGCGACCAAT
* * * *
110420179 TATCCGGTATACATAGTAGCCTGCAGTTAGTACTACACACGTGACCTAAC
1 TATCCGGTACACATAGTAGCCTGCACTTAGTACTACACACGCGACC-AAT
* * * * * *
110420229 CATCTGATACACGTAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGT
1 TATCCGGTACACATAGTAGCCTGCACTTAGTACTACACACGCGA-CCAA-T
* * *
110420280 TAT-CGAGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTAT
1 TATCCG-GTACACATAGTAGCCTGCACTTAGTACTACACACGCGACCAAT
* * * * *
110420329 AATCAGGTACACGTAGTAGCCTGAACTTAGTACTACACACGTGACC
1 TATCCGGTACACATAGTAGCCTGCACTTAGTACTACACACGCGACC
110420375 TCACAGTAGA
Statistics
Matches: 159, Mismatches: 32, Indels: 10
0.79 0.16 0.05
Matches are distributed among these distances:
49 77 0.48
50 46 0.29
51 36 0.23
ACGTcount: A:0.30, C:0.26, G:0.18, T:0.26
Consensus pattern (49 bp):
TATCCGGTACACATAGTAGCCTGCACTTAGTACTACACACGCGACCAAT
Found at i:110420318 original size:101 final size:98
Alignment explanation
Indices: 110420131--110420374 Score: 303
Period size: 100 Copynumber: 2.5 Consensus size: 98
110420121 AGCCAAAGCT
* * * * * *
110420131 ATCTGGTACACATATTAGCCTGTACTTAGTACTACACATGCGACCAATTATCCGGTATACATAGT
1 ATCTGGTACACGTAGTAGCCTGAACTTAGTACTACACACGTGACCAATTATCCGGTACACATAGT
* *
110420196 AGCCTGCAGTTAGTACTACACACGTGACCTA-A
66 AGCCTGCACTTAGTACTACACACGCGACCTATA
* * * *
110420228 CCATCTGATACACGTAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGTTAT-CGAGTACGC
1 --ATCTGGTACACGTAGTAGCCTGAACTTAGTACTACACACGTGA-CCAA-TTATCCG-GTACAC
*
110420292 ATAGTAGCCTGCACTTAGTACTACACATGCGACCTATA
61 ATAGTAGCCTGCACTTAGTACTACACACGCGACCTATA
*
110420330 ATCAGGTACACGTAGTAGCCTGAACTTAGTACTACACACGTGACC
1 ATCTGGTACACGTAGTAGCCTGAACTTAGTACTACACACGTGACC
110420375 TCACAGTAGA
Statistics
Matches: 125, Mismatches: 16, Indels: 8
0.84 0.11 0.05
Matches are distributed among these distances:
99 38 0.30
100 45 0.36
101 41 0.33
102 1 0.01
ACGTcount: A:0.30, C:0.26, G:0.18, T:0.26
Consensus pattern (98 bp):
ATCTGGTACACGTAGTAGCCTGAACTTAGTACTACACACGTGACCAATTATCCGGTACACATAGT
AGCCTGCACTTAGTACTACACACGCGACCTATA
Found at i:110422811 original size:16 final size:16
Alignment explanation
Indices: 110422790--110422844 Score: 74
Period size: 16 Copynumber: 3.4 Consensus size: 16
110422780 GTTTGGTTCA
*
110422790 CTGTAATGGAATAGGG
1 CTGTAATGGAATAGAG
*
110422806 CTGTAATTGAATAGAG
1 CTGTAATGGAATAGAG
* *
110422822 TTGTAATGGAATAGAA
1 CTGTAATGGAATAGAG
110422838 CTGTAAT
1 CTGTAAT
110422845 AAGTAATTCA
Statistics
Matches: 33, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
16 33 1.00
ACGTcount: A:0.36, C:0.05, G:0.27, T:0.31
Consensus pattern (16 bp):
CTGTAATGGAATAGAG
Found at i:110422919 original size:44 final size:46
Alignment explanation
Indices: 110422826--110422919 Score: 138
Period size: 44 Copynumber: 2.1 Consensus size: 46
110422816 ATAGAGTTGT
*
110422826 AATGGAATAGAACTGTAATAAGTAATTCAACTGTTTGGTTGAATGG
1 AATGGAATAGAACTATAATAAGTAATTCAACTGTTTGGTTGAATGG
***
110422872 AATGGAATAGAACTATAAT-AGT-ATTCTTGTGTTTGGTTGAATGG
1 AATGGAATAGAACTATAATAAGTAATTCAACTGTTTGGTTGAATGG
110422916 AATG
1 AATG
110422920 ATGTTGTAAT
Statistics
Matches: 44, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
44 23 0.52
45 3 0.07
46 18 0.41
ACGTcount: A:0.35, C:0.05, G:0.24, T:0.35
Consensus pattern (46 bp):
AATGGAATAGAACTATAATAAGTAATTCAACTGTTTGGTTGAATGG
Found at i:110423113 original size:17 final size:17
Alignment explanation
Indices: 110423091--110423123 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
110423081 AATTATTATT
110423091 AAATATAATTTAATAAA
1 AAATATAATTTAATAAA
110423108 AAATATAATTTAATAA
1 AAATATAATTTAATAA
110423124 CATTCATTAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (17 bp):
AAATATAATTTAATAAA
Found at i:110423651 original size:18 final size:18
Alignment explanation
Indices: 110423628--110423662 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
110423618 ATATGGTAGT
*
110423628 CCAACTAGATTTTAAGTG
1 CCAACTAGATCTTAAGTG
110423646 CCAACTAGATCTTAAGT
1 CCAACTAGATCTTAAGT
110423663 ATATCTGTTA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.34, C:0.20, G:0.14, T:0.31
Consensus pattern (18 bp):
CCAACTAGATCTTAAGTG
Found at i:110423721 original size:40 final size:40
Alignment explanation
Indices: 110423666--110423787 Score: 199
Period size: 40 Copynumber: 3.0 Consensus size: 40
110423656 CTTAAGTATA
*
110423666 TCTGTTAATACATACTTCATCCGGGTAAATTATACAATTT
1 TCTGTTAATACATACTTCATCCGGGTAAATTATACAGTTT
* *
110423706 TCTGTTAATACATACTTTACCCGGGTAAATTATACAGTTT
1 TCTGTTAATACATACTTCATCCGGGTAAATTATACAGTTT
* *
110423746 TCTATTAATACATACTTCATCCGGATAAATTATACAGTTT
1 TCTGTTAATACATACTTCATCCGGGTAAATTATACAGTTT
110423786 TC
1 TC
110423788 GTAGTAAACT
Statistics
Matches: 75, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
40 75 1.00
ACGTcount: A:0.32, C:0.18, G:0.10, T:0.40
Consensus pattern (40 bp):
TCTGTTAATACATACTTCATCCGGGTAAATTATACAGTTT
Found at i:110424956 original size:47 final size:47
Alignment explanation
Indices: 110424847--110424957 Score: 145
Period size: 47 Copynumber: 2.4 Consensus size: 47
110424837 CCGGGATAAG
* *
110424847 CACATAGTGCTTCATCGGAATAAATCCGGAACTTTAACATTATAGTA
1 CACATAGTGCTTCATCGGAACAAATCCGGAACTTTAACAGTATAGTA
* * *
110424894 CACAAAGTACTTCATCGGAACAAATCCGGAACTTTAACAGTAGTCG-A
1 CACATAGTGCTTCATCGGAACAAATCCGGAACTTTAACAGTA-TAGTA
110424941 CACATAGTG-TCTCATCG
1 CACATAGTGCT-TCATCG
110424958 ACTCAATGTC
Statistics
Matches: 55, Mismatches: 7, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
46 1 0.02
47 52 0.95
48 2 0.04
ACGTcount: A:0.35, C:0.23, G:0.16, T:0.26
Consensus pattern (47 bp):
CACATAGTGCTTCATCGGAACAAATCCGGAACTTTAACAGTATAGTA
Found at i:110432192 original size:47 final size:47
Alignment explanation
Indices: 110432083--110432193 Score: 145
Period size: 47 Copynumber: 2.4 Consensus size: 47
110432073 CCGGGATAAG
* *
110432083 CACATAGTGCTTCATCGGAATAAATCCGGAACTTTAACATTATAGTA
1 CACATAGTGCTTCATCGGAACAAATCCGGAACTTTAACAGTATAGTA
* * *
110432130 CACAAAGTACTTCATCGGAACAAATCCGGAACTTTAACAGTAGTCG-A
1 CACATAGTGCTTCATCGGAACAAATCCGGAACTTTAACAGTA-TAGTA
110432177 CACATAGTG-TCTCATCG
1 CACATAGTGCT-TCATCG
110432194 ACTCAATGTC
Statistics
Matches: 55, Mismatches: 7, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
46 1 0.02
47 52 0.95
48 2 0.04
ACGTcount: A:0.35, C:0.23, G:0.16, T:0.26
Consensus pattern (47 bp):
CACATAGTGCTTCATCGGAACAAATCCGGAACTTTAACAGTATAGTA
Found at i:110433462 original size:40 final size:40
Alignment explanation
Indices: 110433415--110433527 Score: 190
Period size: 40 Copynumber: 2.8 Consensus size: 40
110433405 GTTCATTACA
110433415 TTACCCGGGTAAATTATACAGTTTTCTATTAATACATACT
1 TTACCCGGGTAAATTATACAGTTTTCTATTAATACATACT
*
110433455 TTACCCGGGTAAATTATACAGTTTTCTATTAATATATACT
1 TTACCCGGGTAAATTATACAGTTTTCTATTAATACATACT
* * *
110433495 TCATCCGGATAAATTATACAGTTTTCTATTAAT
1 TTACCCGGGTAAATTATACAGTTTTCTATTAAT
110433528 GTGCTTGTGA
Statistics
Matches: 69, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
40 69 1.00
ACGTcount: A:0.33, C:0.16, G:0.10, T:0.42
Consensus pattern (40 bp):
TTACCCGGGTAAATTATACAGTTTTCTATTAATACATACT
Found at i:110434726 original size:21 final size:20
Alignment explanation
Indices: 110434700--110434741 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 20
110434690 TAAACTTTAG
110434700 GGTTTAGAGTTCAAGGTTCAA
1 GGTTTAGAGTTCAA-GTTCAA
* *
110434721 GGTTTAGGGTTTAAGTTCAA
1 GGTTTAGAGTTCAAGTTCAA
110434741 G
1 G
110434742 ATTCAAGATT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
20 7 0.37
21 12 0.63
ACGTcount: A:0.26, C:0.07, G:0.31, T:0.36
Consensus pattern (20 bp):
GGTTTAGAGTTCAAGTTCAA
Found at i:110434746 original size:27 final size:28
Alignment explanation
Indices: 110434695--110434757 Score: 92
Period size: 27 Copynumber: 2.3 Consensus size: 28
110434685 AACTCTAAAC
* *
110434695 TTTAGGGTTTAGAGTTCAAGGTTCAAGG
1 TTTAGGGTTTAGAGTTCAAGATTCAAGA
110434723 TTTAGGGTTTA-AGTTCAAGATTCAAGA
1 TTTAGGGTTTAGAGTTCAAGATTCAAGA
*
110434750 TTTGGGGT
1 TTTAGGGT
110434758 AAGGTGTTTA
Statistics
Matches: 32, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
27 21 0.66
28 11 0.34
ACGTcount: A:0.25, C:0.06, G:0.30, T:0.38
Consensus pattern (28 bp):
TTTAGGGTTTAGAGTTCAAGATTCAAGA
Found at i:110435686 original size:22 final size:22
Alignment explanation
Indices: 110435661--110435703 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
110435651 TACACAAATA
110435661 ATAACAACAAAATAATAGCAAT
1 ATAACAACAAAATAATAGCAAT
* *
110435683 ATAACAATAAAATTATAGCAA
1 ATAACAACAAAATAATAGCAA
110435704 AACAATGAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.63, C:0.12, G:0.05, T:0.21
Consensus pattern (22 bp):
ATAACAACAAAATAATAGCAAT
Found at i:110440738 original size:47 final size:47
Alignment explanation
Indices: 110440664--110440754 Score: 157
Period size: 47 Copynumber: 1.9 Consensus size: 47
110440654 ATTGTCCCAC
110440664 GGATATCTGAAAATAGATACGAAGATAT-GATCCTTCAAGGACTTTTG
1 GGATATCTGAAAATAGATACGAAGATATAG-TCCTTCAAGGACTTTTG
*
110440711 GGATGTCTGAAAATAGATACGAAGATATAGTCCTTCAAGGACTT
1 GGATATCTGAAAATAGATACGAAGATATAGTCCTTCAAGGACTT
110440755 CTCAAATATT
Statistics
Matches: 42, Mismatches: 1, Indels: 2
0.93 0.02 0.04
Matches are distributed among these distances:
47 41 0.98
48 1 0.02
ACGTcount: A:0.36, C:0.13, G:0.22, T:0.29
Consensus pattern (47 bp):
GGATATCTGAAAATAGATACGAAGATATAGTCCTTCAAGGACTTTTG
Found at i:110444500 original size:38 final size:38
Alignment explanation
Indices: 110444443--110444518 Score: 116
Period size: 38 Copynumber: 2.0 Consensus size: 38
110444433 GTTAGTCTTT
*
110444443 TATACAACCACAACAAAGCACAATGGACCAACAACCAG
1 TATACAACCACAACAAAGCACAACGGACCAACAACCAG
** *
110444481 TATACAACCGTAACCAAGCACAACGGACCAACAACCAG
1 TATACAACCACAACAAAGCACAACGGACCAACAACCAG
110444519 CAAATGTTGT
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
38 34 1.00
ACGTcount: A:0.47, C:0.33, G:0.12, T:0.08
Consensus pattern (38 bp):
TATACAACCACAACAAAGCACAACGGACCAACAACCAG
Found at i:110446951 original size:23 final size:22
Alignment explanation
Indices: 110446908--110446951 Score: 52
Period size: 22 Copynumber: 2.0 Consensus size: 22
110446898 AAGAGCTCTA
*
110446908 AAAAAGGGAAAGATGGATAAAC
1 AAAAAGGGAAAGAGGGATAAAC
* *
110446930 AAAACGGGACAGAGGGAGTAAA
1 AAAAAGGGAAAGAGGGA-TAAA
110446952 ATCCACAAAT
Statistics
Matches: 18, Mismatches: 3, Indels: 1
0.82 0.14 0.05
Matches are distributed among these distances:
22 14 0.78
23 4 0.22
ACGTcount: A:0.55, C:0.07, G:0.32, T:0.07
Consensus pattern (22 bp):
AAAAAGGGAAAGAGGGATAAAC
Found at i:110451404 original size:31 final size:29
Alignment explanation
Indices: 110451367--110451429 Score: 72
Period size: 31 Copynumber: 2.1 Consensus size: 29
110451357 TTAATAAAAG
*
110451367 TAAAATTACAATTTAATTTCTCTAAAAATGA
1 TAAAATTACAATCTAATTT-T-TAAAAATGA
** *
110451398 TAAAATTTTAATCTAATTTTTAAAAATTA
1 TAAAATTACAATCTAATTTTTAAAAATGA
110451427 TAA
1 TAA
110451430 TTTAATTTCA
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
29 11 0.39
30 1 0.04
31 16 0.57
ACGTcount: A:0.49, C:0.06, G:0.02, T:0.43
Consensus pattern (29 bp):
TAAAATTACAATCTAATTTTTAAAAATGA
Found at i:110452072 original size:60 final size:56
Alignment explanation
Indices: 110451942--110452054 Score: 217
Period size: 56 Copynumber: 2.0 Consensus size: 56
110451932 TACATTTATA
*
110451942 TCTAAAAAATTATATATATTTATTTATTATTTGTTTATTACTTTTAATATTATTGG
1 TCTAAAAAATTATATATATATATTTATTATTTGTTTATTACTTTTAATATTATTGG
110451998 TCTAAAAAATTATATATATATATTTATTATTTGTTTATTACTTTTAATATTATTGG
1 TCTAAAAAATTATATATATATATTTATTATTTGTTTATTACTTTTAATATTATTGG
110452054 T
1 T
110452055 TAACATATTT
Statistics
Matches: 56, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
56 56 1.00
ACGTcount: A:0.35, C:0.04, G:0.05, T:0.57
Consensus pattern (56 bp):
TCTAAAAAATTATATATATATATTTATTATTTGTTTATTACTTTTAATATTATTGG
Found at i:110452684 original size:31 final size:31
Alignment explanation
Indices: 110452646--110452709 Score: 128
Period size: 31 Copynumber: 2.1 Consensus size: 31
110452636 TATGAAAACC
110452646 TTAGTACATGAGCTCAAGTAAGATAAATTTA
1 TTAGTACATGAGCTCAAGTAAGATAAATTTA
110452677 TTAGTACATGAGCTCAAGTAAGATAAATTTA
1 TTAGTACATGAGCTCAAGTAAGATAAATTTA
110452708 TT
1 TT
110452710 CATATTTGAT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 33 1.00
ACGTcount: A:0.41, C:0.09, G:0.16, T:0.34
Consensus pattern (31 bp):
TTAGTACATGAGCTCAAGTAAGATAAATTTA
Found at i:110462559 original size:19 final size:19
Alignment explanation
Indices: 110462520--110462559 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
110462510 GGTTAATTAG
* *
110462520 AATTTAATTAAGTGGATTT
1 AATTTAATTAAGAGGAATT
*
110462539 AATTTAATTAAGAGTAATT
1 AATTTAATTAAGAGGAATT
110462558 AA
1 AA
110462560 GTAAAAGGAC
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.45, C:0.00, G:0.12, T:0.42
Consensus pattern (19 bp):
AATTTAATTAAGAGGAATT
Found at i:110465668 original size:130 final size:131
Alignment explanation
Indices: 110465415--110465678 Score: 345
Period size: 130 Copynumber: 2.0 Consensus size: 131
110465405 AAATTCTTTA
*
110465415 AAACGAAGACGAGATCTGATATGTTGCAATTCGCGGAATCGTGCCATAATGTGTTGGGTTGCAAT
1 AAACGAAGACGAGATCTGATATGTTGCAATTCGCGGAATCGTGCCATAACGTGTTGGGTTGCAAT
* * * *
110465480 TTCGCATTTGCTCAAAATAATCGAATATCATTTCAAAATTTCACTCATATCTT-TTAAAATCCCT
66 TTCGCATTTGCTCAAAATAATCAAATATCACTTCAAAATTTCACTCAGATCTTCTAAAAATCCCT
110465544 T
131 T
* * * *
110465545 AAACGAAGGCGATATGC-GATAT-TTGGCAATTCGTGGAATCGTGCCCTAACGTGTTGGGTTGCA
1 AAACGAAGACGAGAT-CTGATATGTT-GCAATTCGCGGAATCGTGCCATAACGTGTTGGGTTGCA
* * * * * *
110465608 ATTTCTCGTTTGTTTAAAATAATCAAATATCCCTTCAAAATTTCACTCAGGTCTTCTAAAAATCC
64 ATTTCGCATTTGCTCAAAATAATCAAATATCACTTCAAAATTTCACTCAGATCTTCTAAAAATCC
*
110465673 TTT
129 CTT
110465676 AAA
1 AAA
110465679 ATGAAGGTAA
Statistics
Matches: 115, Mismatches: 16, Indels: 5
0.85 0.12 0.04
Matches are distributed among these distances:
129 2 0.02
130 99 0.86
131 14 0.12
ACGTcount: A:0.31, C:0.19, G:0.17, T:0.34
Consensus pattern (131 bp):
AAACGAAGACGAGATCTGATATGTTGCAATTCGCGGAATCGTGCCATAACGTGTTGGGTTGCAAT
TTCGCATTTGCTCAAAATAATCAAATATCACTTCAAAATTTCACTCAGATCTTCTAAAAATCCCT
T
Found at i:110467891 original size:18 final size:18
Alignment explanation
Indices: 110467834--110467893 Score: 59
Period size: 18 Copynumber: 3.3 Consensus size: 18
110467824 GACTGTCTGC
* *
110467834 TACTGAATAATTGACTGT
1 TACTGAATAAATGACTAT
* *
110467852 TACAGAATAAACGACTGA-
1 TACTGAATAAATGACT-AT
*
110467870 TACTGAATAAATGAATAT
1 TACTGAATAAATGACTAT
110467888 TACTGA
1 TACTGA
110467894 TTAACCGATT
Statistics
Matches: 33, Mismatches: 7, Indels: 4
0.75 0.16 0.09
Matches are distributed among these distances:
17 1 0.03
18 32 0.97
ACGTcount: A:0.43, C:0.12, G:0.15, T:0.30
Consensus pattern (18 bp):
TACTGAATAAATGACTAT
Found at i:110470629 original size:16 final size:16
Alignment explanation
Indices: 110470608--110470648 Score: 50
Period size: 16 Copynumber: 2.6 Consensus size: 16
110470598 ACTAATATAC
110470608 AATTTGTTTATATTTT
1 AATTTGTTTATATTTT
110470624 AATTTGCTTT-TATTTT
1 AATTTG-TTTATATTTT
*
110470640 TATTT-TTTA
1 AATTTGTTTA
110470649 AATATACTTA
Statistics
Matches: 22, Mismatches: 1, Indels: 5
0.79 0.04 0.18
Matches are distributed among these distances:
14 3 0.14
16 16 0.73
17 3 0.14
ACGTcount: A:0.22, C:0.02, G:0.05, T:0.71
Consensus pattern (16 bp):
AATTTGTTTATATTTT
Found at i:110471741 original size:33 final size:33
Alignment explanation
Indices: 110471670--110471741 Score: 83
Period size: 33 Copynumber: 2.2 Consensus size: 33
110471660 AAAAAAAAAT
* ** * *
110471670 TATTATTTTGTTGTTTTCTTGCTATTTTGTTGC
1 TATTTTTTTGTTGTTTTCTCACTATTTTGCTGA
110471703 TATTTTTTTGTTGTTTTCTCACTATTTTGCT-A
1 TATTTTTTTGTTGTTTTCTCACTATTTTGCTGA
*
110471735 TAATTTT
1 TATTTTT
110471742 ACTATTATGT
Statistics
Matches: 33, Mismatches: 6, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
32 6 0.18
33 27 0.82
ACGTcount: A:0.12, C:0.10, G:0.11, T:0.67
Consensus pattern (33 bp):
TATTTTTTTGTTGTTTTCTCACTATTTTGCTGA
Found at i:110471929 original size:9 final size:9
Alignment explanation
Indices: 110471915--110471947 Score: 66
Period size: 9 Copynumber: 3.7 Consensus size: 9
110471905 AAAATATTTA
110471915 TTTTAATAT
1 TTTTAATAT
110471924 TTTTAATAT
1 TTTTAATAT
110471933 TTTTAATAT
1 TTTTAATAT
110471942 TTTTAA
1 TTTTAA
110471948 AATATATAAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 24 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (9 bp):
TTTTAATAT
Found at i:110474037 original size:29 final size:28
Alignment explanation
Indices: 110474000--110474064 Score: 78
Period size: 29 Copynumber: 2.2 Consensus size: 28
110473990 AAAATCTTAA
*
110474000 AATTATAT-ATTAACTTTAATTTAATGTGT
1 AATTATATAATGAACTTTAATTT-A-GTGT
*
110474029 AATTGTATACATGAACTTTAATTTAGTGT
1 AATTATATA-ATGAACTTTAATTTAGTGT
110474058 AATTATA
1 AATTATA
110474065 CACGTGAAAA
Statistics
Matches: 31, Mismatches: 3, Indels: 4
0.82 0.08 0.11
Matches are distributed among these distances:
29 17 0.55
30 1 0.03
31 13 0.42
ACGTcount: A:0.38, C:0.05, G:0.09, T:0.48
Consensus pattern (28 bp):
AATTATATAATGAACTTTAATTTAGTGT
Found at i:110474072 original size:29 final size:31
Alignment explanation
Indices: 110474011--110474072 Score: 83
Period size: 29 Copynumber: 2.1 Consensus size: 31
110474001 ATTATATATT
* *
110474011 AACTTTAATTTAATGTGTAATTGTATACATG
1 AACTTTAATTTAATGTGTAATTATACACATG
*
110474042 AACTTTAATTT-A-GTGTAATTATACACGTG
1 AACTTTAATTTAATGTGTAATTATACACATG
110474071 AA
1 AA
110474073 AACTCTAATT
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
29 16 0.57
30 1 0.04
31 11 0.39
ACGTcount: A:0.37, C:0.08, G:0.13, T:0.42
Consensus pattern (31 bp):
AACTTTAATTTAATGTGTAATTATACACATG
Found at i:110479844 original size:22 final size:24
Alignment explanation
Indices: 110479819--110479862 Score: 74
Period size: 22 Copynumber: 1.9 Consensus size: 24
110479809 AAACTATAAT
110479819 AAATAAAA-AAAATAAA-ATATTA
1 AAATAAAATAAAATAAATATATTA
110479841 AAATAAAATAAAATAAATATAT
1 AAATAAAATAAAATAAATATAT
110479863 ATTTAAAAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
22 8 0.40
23 8 0.40
24 4 0.20
ACGTcount: A:0.75, C:0.00, G:0.00, T:0.25
Consensus pattern (24 bp):
AAATAAAATAAAATAAATATATTA
Found at i:110479848 original size:18 final size:17
Alignment explanation
Indices: 110479822--110479855 Score: 59
Period size: 18 Copynumber: 1.9 Consensus size: 17
110479812 CTATAATAAA
110479822 TAAAAAAAATAAAATAT
1 TAAAAAAAATAAAATAT
110479839 TAAAATAAAATAAAATA
1 TAAAA-AAAATAAAATA
110479856 AATATATATT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (17 bp):
TAAAAAAAATAAAATAT
Found at i:110479851 original size:27 final size:25
Alignment explanation
Indices: 110479819--110479876 Score: 71
Period size: 27 Copynumber: 2.2 Consensus size: 25
110479809 AAACTATAAT
110479819 AAATAAAAAAAATAAAATATTAAAATA
1 AAATAAAAAAAAT-AAATATTAAAA-A
* * *
110479846 AAATAAAATAAATATATATTTAAAA
1 AAATAAAAAAAATAAATATTAAAAA
110479871 AAATAA
1 AAATAA
110479877 TATATGCAGT
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
25 7 0.25
26 9 0.32
27 12 0.43
ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26
Consensus pattern (25 bp):
AAATAAAAAAAATAAATATTAAAAA
Found at i:110479879 original size:17 final size:17
Alignment explanation
Indices: 110479849--110479881 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
110479839 TAAAATAAAA
110479849 TAAAATAAATATATATT
1 TAAAATAAATATATATT
110479866 TAAAA-AAATAATATAT
1 TAAAATAAAT-ATATAT
110479882 GCAGTCAAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 4 0.27
17 11 0.73
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (17 bp):
TAAAATAAATATATATT
Found at i:110483185 original size:58 final size:58
Alignment explanation
Indices: 110483095--110483214 Score: 240
Period size: 58 Copynumber: 2.1 Consensus size: 58
110483085 CCCAATGAGT
110483095 ATTAATAGTAACCTGGAACAAGAATAAAAAGAAGCGGTTTACCTGTCATTGCAGATCC
1 ATTAATAGTAACCTGGAACAAGAATAAAAAGAAGCGGTTTACCTGTCATTGCAGATCC
110483153 ATTAATAGTAACCTGGAACAAGAATAAAAAGAAGCGGTTTACCTGTCATTGCAGATCC
1 ATTAATAGTAACCTGGAACAAGAATAAAAAGAAGCGGTTTACCTGTCATTGCAGATCC
110483211 ATTA
1 ATTA
110483215 GAGAGCTGAC
Statistics
Matches: 62, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
58 62 1.00
ACGTcount: A:0.40, C:0.17, G:0.18, T:0.25
Consensus pattern (58 bp):
ATTAATAGTAACCTGGAACAAGAATAAAAAGAAGCGGTTTACCTGTCATTGCAGATCC
Found at i:110486535 original size:16 final size:18
Alignment explanation
Indices: 110486504--110486545 Score: 61
Period size: 16 Copynumber: 2.4 Consensus size: 18
110486494 TAATGACCTG
110486504 TATATTAATTATATTTAA
1 TATATTAATTATATTTAA
110486522 TATATTAA-TA-ATTTAA
1 TATATTAATTATATTTAA
*
110486538 TAAATTAA
1 TATATTAA
110486546 AATATGATCC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
16 13 0.57
17 2 0.09
18 8 0.35
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (18 bp):
TATATTAATTATATTTAA
Found at i:110492905 original size:61 final size:58
Alignment explanation
Indices: 110492810--110492931 Score: 208
Period size: 61 Copynumber: 2.1 Consensus size: 58
110492800 ATATACACTC
110492810 CATTACACAACCTATTTATACTAATAATCAGATATACTAAGAAGGAAAGTCAAAGATTACA
1 CATTACACAACCTATTTATACTAATAATCAGATATAC--A-AAGGAAAGTCAAAGATTACA
*
110492871 CATTACACAACCTATTTATACTAATAATCAGATATACAAAGGAAAGTCAAAGATTATA
1 CATTACACAACCTATTTATACTAATAATCAGATATACAAAGGAAAGTCAAAGATTACA
110492929 CAT
1 CAT
110492932 CCTAATGTTG
Statistics
Matches: 60, Mismatches: 1, Indels: 3
0.94 0.02 0.05
Matches are distributed among these distances:
58 22 0.37
59 1 0.02
61 37 0.62
ACGTcount: A:0.48, C:0.16, G:0.09, T:0.27
Consensus pattern (58 bp):
CATTACACAACCTATTTATACTAATAATCAGATATACAAAGGAAAGTCAAAGATTACA
Found at i:110499057 original size:29 final size:29
Alignment explanation
Indices: 110499015--110499071 Score: 96
Period size: 29 Copynumber: 2.0 Consensus size: 29
110499005 CCACCTTTTT
110499015 TTGCTAATCAAGAACAATAGAAATAATTG
1 TTGCTAATCAAGAACAATAGAAATAATTG
* *
110499044 TTGCTACTCAAGAACAATAGCAATAATT
1 TTGCTAATCAAGAACAATAGAAATAATT
110499072 AAGAGTTTCT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 26 1.00
ACGTcount: A:0.46, C:0.14, G:0.12, T:0.28
Consensus pattern (29 bp):
TTGCTAATCAAGAACAATAGAAATAATTG
Found at i:110499087 original size:5 final size:5
Alignment explanation
Indices: 110499077--110499101 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
110499067 TAATTAAGAG
110499077 TTTCT TTTCT TTTCT TTTCT TTTCT
1 TTTCT TTTCT TTTCT TTTCT TTTCT
110499102 CATCTTTTAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.00, C:0.20, G:0.00, T:0.80
Consensus pattern (5 bp):
TTTCT
Found at i:110500627 original size:80 final size:80
Alignment explanation
Indices: 110500494--110500651 Score: 271
Period size: 80 Copynumber: 2.0 Consensus size: 80
110500484 CTCATTCCTT
* *
110500494 CAGGAAAAATACACGACAAGAGGTATCCATTCGTTTTGCTAATTCTGGTTCAAGATCTCTGAAAT
1 CAGGAAAAATACACGACAAGAGGTATCCACTCATTTTGCTAATTCTGGTTCAAGATCTCTGAAAT
110500559 GAATGTTAAAACACG
66 GAATGTTAAAACACG
* * *
110500574 CAGGAAAAATATATGACAAGAGGTATCCGCTCATTTTGCTAATTCTGGTTCAAGATCTCTGAAAT
1 CAGGAAAAATACACGACAAGAGGTATCCACTCATTTTGCTAATTCTGGTTCAAGATCTCTGAAAT
110500639 GAATGTTAAAACA
66 GAATGTTAAAACA
110500652 ATGTGTGTGT
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
80 73 1.00
ACGTcount: A:0.37, C:0.16, G:0.18, T:0.28
Consensus pattern (80 bp):
CAGGAAAAATACACGACAAGAGGTATCCACTCATTTTGCTAATTCTGGTTCAAGATCTCTGAAAT
GAATGTTAAAACACG
Found at i:110507537 original size:23 final size:23
Alignment explanation
Indices: 110507506--110507555 Score: 64
Period size: 23 Copynumber: 2.2 Consensus size: 23
110507496 AGTTTTAATG
* * *
110507506 TTTAATTTGATATTTGAATTTTT
1 TTTAATTTGATACTTAAAGTTTT
*
110507529 TTTAGTTTGATACTTAAAGTTTT
1 TTTAATTTGATACTTAAAGTTTT
110507552 TTTA
1 TTTA
110507556 TCCCATTTAG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.26, C:0.02, G:0.10, T:0.62
Consensus pattern (23 bp):
TTTAATTTGATACTTAAAGTTTT
Found at i:110508428 original size:7 final size:7
Alignment explanation
Indices: 110508416--110508440 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
110508406 CCGAAATTTA
110508416 TATTTTT
1 TATTTTT
110508423 TATTTTT
1 TATTTTT
110508430 TATTTTT
1 TATTTTT
110508437 TATT
1 TATT
110508441 AAAAGAAGTA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.16, C:0.00, G:0.00, T:0.84
Consensus pattern (7 bp):
TATTTTT
Found at i:110511099 original size:4 final size:4
Alignment explanation
Indices: 110511090--110511133 Score: 52
Period size: 4 Copynumber: 11.0 Consensus size: 4
110511080 ATACGTGAGA
* * * *
110511090 ATAT ATAT ATGT ATAT ATGT ATGT ATAT ATAT ATAT GTAT ATAT
1 ATAT ATAT ATAT ATAT ATAT ATAT ATAT ATAT ATAT ATAT ATAT
110511134 GTATGTATTA
Statistics
Matches: 34, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
4 34 1.00
ACGTcount: A:0.41, C:0.00, G:0.09, T:0.50
Consensus pattern (4 bp):
ATAT
Found at i:110511106 original size:8 final size:8
Alignment explanation
Indices: 110511093--110511137 Score: 63
Period size: 8 Copynumber: 5.4 Consensus size: 8
110511083 CGTGAGAATA
110511093 TATATATG
1 TATATATG
110511101 TATATATG
1 TATATATG
*
110511109 TATGTATATA
1 TA--TATATG
110511119 TATATATG
1 TATATATG
110511127 TATATATG
1 TATATATG
110511135 TAT
1 TAT
110511138 GTATTAAAGC
Statistics
Matches: 33, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
8 26 0.79
10 7 0.21
ACGTcount: A:0.38, C:0.00, G:0.11, T:0.51
Consensus pattern (8 bp):
TATATATG
Found at i:110511107 original size:12 final size:12
Alignment explanation
Indices: 110511090--110511141 Score: 68
Period size: 12 Copynumber: 4.2 Consensus size: 12
110511080 ATACGTGAGA
110511090 ATATATATATGT
1 ATATATATATGT
*
110511102 ATATATGTATGTAT
1 ATATATATATG--T
110511116 ATATATATATGT
1 ATATATATATGT
*
110511128 ATATATGTATGT
1 ATATATATATGT
110511140 AT
1 AT
110511142 TAAAGCATAT
Statistics
Matches: 35, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
12 24 0.69
14 11 0.31
ACGTcount: A:0.38, C:0.00, G:0.12, T:0.50
Consensus pattern (12 bp):
ATATATATATGT
Found at i:110511122 original size:18 final size:18
Alignment explanation
Indices: 110511095--110511129 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
110511085 TGAGAATATA
*
110511095 TATATGTATATATGTATG
1 TATATATATATATGTATG
110511113 TATATATATATATGTAT
1 TATATATATATATGTAT
110511130 ATATGTATGT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.37, C:0.00, G:0.11, T:0.51
Consensus pattern (18 bp):
TATATATATATATGTATG
Found at i:110511151 original size:26 final size:26
Alignment explanation
Indices: 110511096--110511151 Score: 78
Period size: 26 Copynumber: 2.2 Consensus size: 26
110511086 GAGAATATAT
* *
110511096 ATATGTATATATGTATGTATATATAT
1 ATATGTATATATGTATGTATATAAAC
110511122 ATATGTATATATGTATGTAT-TAAAGC
1 ATATGTATATATGTATGTATATAAA-C
110511148 ATAT
1 ATAT
110511152 TGATTAAGCA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
25 3 0.11
26 24 0.89
ACGTcount: A:0.39, C:0.02, G:0.12, T:0.46
Consensus pattern (26 bp):
ATATGTATATATGTATGTATATAAAC
Found at i:110515707 original size:3 final size:3
Alignment explanation
Indices: 110515699--110515726 Score: 56
Period size: 3 Copynumber: 9.3 Consensus size: 3
110515689 GACTCATTAA
110515699 AAT AAT AAT AAT AAT AAT AAT AAT AAT A
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT A
110515727 CAAACCAACC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:110516215 original size:19 final size:20
Alignment explanation
Indices: 110516191--110516229 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
110516181 CTTGCTTAGA
110516191 TTGCT-GAATGTTTTTTTTG
1 TTGCTGGAATGTTTTTTTTG
*
110516210 TTGCTGGAATTTTTTTTTTG
1 TTGCTGGAATGTTTTTTTTG
110516230 CTTTTGAAAT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 5 0.28
20 13 0.72
ACGTcount: A:0.10, C:0.05, G:0.21, T:0.64
Consensus pattern (20 bp):
TTGCTGGAATGTTTTTTTTG
Found at i:110517325 original size:77 final size:77
Alignment explanation
Indices: 110516993--110517450 Score: 611
Period size: 77 Copynumber: 5.9 Consensus size: 77
110516983 CGAACTTAGT
* * * *
110516993 GTGTGA-CCTAGGACTCAATTCACCTTTCGCAATATGAGTTGA--TTTTT--AAAACAGAAATTG
1 GTGTGACCCGAGG-CTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAACAGAAATTA
* *
110517053 AAAATATCTCAGC
65 AAAACACCTCAGC
110517066 GTGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAAAAACAAGAAA
1 GTGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTG---AAAAAC-AGAAA
*
110517131 TTGAAAACACCTCAGC
62 TTAAAAACACCTCAGC
* * *
110517147 GTGTGACCTGAAGCTCAACTCACCTCTCGCAATATAAGTTGATTTTTTTGAAAAAAACAGAAATT
1 GTGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTG--AAAAACAGAAATT
* *
110517212 GAAAACACCTCAGT
64 AAAAACACCTCAGC
* * * * *
110517226 GTGTGACCTGAGGCTCAACTCACCTCTCACAATATGAGTTGATTTGTTTGAAAAATATAAATTAA
1 GTGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAACAGAAATTAA
*
110517291 AAACACCTTAGC
66 AAACACCTCAGC
* *
110517303 ATGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTATTTGAAAAACAGAAATTAA
1 GTGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAACAGAAATTAA
110517368 AAACACCTCAGC
66 AAACACCTCAGC
* *
110517380 GTGTGACTCGAAGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAACAGAAATTGA
1 GTGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAACAGAAATT-A
110517445 AAAACA
65 AAAACA
110517451 GAAATTAAAA
Statistics
Matches: 346, Mismatches: 29, Indels: 15
0.89 0.07 0.04
Matches are distributed among these distances:
73 33 0.10
74 5 0.01
75 5 0.01
77 151 0.44
78 7 0.02
79 66 0.19
80 13 0.04
81 66 0.19
ACGTcount: A:0.36, C:0.20, G:0.16, T:0.28
Consensus pattern (77 bp):
GTGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAACAGAAATTAA
AAACACCTCAGC
Found at i:110517460 original size:13 final size:14
Alignment explanation
Indices: 110517427--110517474 Score: 71
Period size: 14 Copynumber: 3.5 Consensus size: 14
110517417 GTTGATTTTT
110517427 TTGAAAAACAGAAA
1 TTGAAAAACAGAAA
110517441 TTGAAAAACAGAAA
1 TTGAAAAACAGAAA
* *
110517455 TT-AAAAATAGAAT
1 TTGAAAAACAGAAA
110517468 TTGAAAA
1 TTGAAAA
110517475 GACCTCGGCA
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
13 11 0.35
14 20 0.65
ACGTcount: A:0.62, C:0.04, G:0.12, T:0.21
Consensus pattern (14 bp):
TTGAAAAACAGAAA
Found at i:110517734 original size:77 final size:76
Alignment explanation
Indices: 110517457--110517779 Score: 375
Period size: 77 Copynumber: 4.2 Consensus size: 76
110517447 AACAGAAATT
* * * * * *
110517457 AAAAATAGAATTTGAAAAGACCTCGGCATGTGGCCCGAGACTCAACTCACCTCTCGCAATATGAG
1 AAAAACAGAAATTGAAAATACCTCAGCATGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAG
110517522 TTGA-TTTTTG
66 TTGATTTTTTG
** * * *
110517532 AAAAGTAAAAATTGAAAATAGCTCAGC--GTGTCCCGAGGCTCAACTCACCTCTCGCAATATTAG
1 AAAAACAGAAATTGAAAATACCTCAGCATGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAG
***
110517595 TTGATTTTAAAAA
66 TTGATTTT--TTG
* * * * * *
110517608 AAAAACAAAAATTTG-AAACACCTCAGCATGTGACCCGATGCTCAACTCACTTCTCGCAATATAA
1 AAAAACAGAAA-TTGAAAATACCTCAGCATGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGA
110517672 GTTGATTTGTTTG
65 GTTGATTT-TTTG
*
110517685 AAAAACAGAAATTGAAAATACCTCAGCGTGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAG
1 AAAAACAGAAATTGAAAATACCTCAGCATGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAG
110517750 TTGATTTTTTTG
66 TTGA-TTTTTTG
*
110517762 AAAAACAGAAATTTAAAA
1 AAAAACAGAAATTGAAAA
110517780 ACAGAAATTA
Statistics
Matches: 208, Mismatches: 31, Indels: 16
0.82 0.12 0.06
Matches are distributed among these distances:
73 37 0.18
74 3 0.01
75 21 0.10
76 22 0.11
77 82 0.39
78 42 0.20
79 1 0.00
ACGTcount: A:0.36, C:0.20, G:0.16, T:0.27
Consensus pattern (76 bp):
AAAAACAGAAATTGAAAATACCTCAGCATGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAG
TTGATTTTTTG
Found at i:110517742 original size:332 final size:330
Alignment explanation
Indices: 110517119--110517934 Score: 1175
Period size: 332 Copynumber: 2.4 Consensus size: 330
110517109 TTTTTTGAAA
* * * * * * *
110517119 AAAAACAAGAAATTGAAAACACCTCAGCGTGTGACCTGA-AGCTCAACTCACCTCTCGCAATATA
1 AAAAACAA-AATTTGAAAAGACCTCGGCATGTGGCCCGAGA-CTCAACTCACCTCTCGCAATATG
* * * *
110517183 AGTTGATTTTTTTGAAAAAAACAGAAATTGAAAACACCTCAGTGTGTGACCTGAGGCTCAACTCA
64 AGTTGA--TTTTTGAAAAGAA-A-AAATTGAAAATACCTCAGCGTGT--CCCGAGGCTCAACTCA
*** * * *
110517248 CCTCTCACAATATGAGTTGATTTGTTTGAAAAATATAAATTAAAAACACCTTAGCATGTGACCCG
123 CCTCTCACAATATGAGTTGATTT-TAAAAAAAACAAAAATTAAAAACACCTCAGCATGTGACCCG
*
110517313 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTATTTGAAAAACAGAAATTAAAAACACCTCA
187 AGGCTCAACTCACCTCTCGCAATATAAGTTGATTTATTTGAAAAACAGAAATTAAAAACACCTCA
*
110517378 GCGTGTGACTCGAAGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAACAGAAATT
252 GCGTGTGACCCGAAGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAACAGAAATT
110517443 GAAAAACAGAAATT
317 GAAAAACAGAAATT
* *
110517457 AAAAATAGAATTTGAAAAGACCTCGGCATGTGGCCCGAGACTCAACTCACCTCTCGCAATATGAG
1 AAAAACAAAATTTGAAAAGACCTCGGCATGTGGCCCGAGACTCAACTCACCTCTCGCAATATGAG
* * *
110517522 TTGATTTTTGAAAAGTAAAAATTGAAAATAGCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGC
66 TTGATTTTTGAAAAGAAAAAATTGAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCAC
* ** *
110517587 AATATTAGTTGATTTTAAAAAAAAAACAAAAATTTGAAACACCTCAGCATGTGACCCGATGCTCA
131 AATATGAGTTGATTTT--AAAAAAAACAAAAATTAAAAACACCTCAGCATGTGACCCGAGGCTCA
* * * *
110517652 ACTCACTTCTCGCAATATAAGTTGATTTGTTTGAAAAACAGAAATTGAAAATACCTCAGCGTGTG
194 ACTCACCTCTCGCAATATAAGTTGATTTATTTGAAAAACAGAAATTAAAAACACCTCAGCGTGTG
* * *
110517717 TCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAACAGAAATTTAAAAAC
259 ACCCGAAGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAACAGAAATTGAAAAAC
110517782 AGAAATT
324 AGAAATT
* *
110517789 AAAAACAAAATTTGAAAAGACCTCGGCATGTGGCCTGAGACTCGACTCACCTCTCGCAATATGAG
1 AAAAACAAAATTTGAAAAGACCTCGGCATGTGGCCCGAGACTCAACTCACCTCTCGCAATATGAG
* *
110517854 TTGATTTTTGAAAAGCAGAAATTGAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCAC
66 TTGATTTTTGAAAAGAAAAAATTGAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCAC
110517919 AATATGAGTTGATTTT
131 AATATGAGTTGATTTT
110517935 TTTGAAAAGC
Statistics
Matches: 431, Mismatches: 44, Indels: 12
0.89 0.09 0.02
Matches are distributed among these distances:
330 1 0.00
331 36 0.08
332 303 0.70
333 20 0.05
334 1 0.00
335 11 0.03
337 52 0.12
338 7 0.02
ACGTcount: A:0.37, C:0.21, G:0.16, T:0.26
Consensus pattern (330 bp):
AAAAACAAAATTTGAAAAGACCTCGGCATGTGGCCCGAGACTCAACTCACCTCTCGCAATATGAG
TTGATTTTTGAAAAGAAAAAATTGAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCAC
AATATGAGTTGATTTTAAAAAAAACAAAAATTAAAAACACCTCAGCATGTGACCCGAGGCTCAAC
TCACCTCTCGCAATATAAGTTGATTTATTTGAAAAACAGAAATTAAAAACACCTCAGCGTGTGAC
CCGAAGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAACAGAAATTGAAAAACAG
AAATT
Found at i:110517806 original size:13 final size:14
Alignment explanation
Indices: 110517762--110517806 Score: 67
Period size: 14 Copynumber: 3.3 Consensus size: 14
110517752 GATTTTTTTG
110517762 AAAAACAGAAATTT
1 AAAAACAGAAATTT
110517776 AAAAACAGAAA-TT
1 AAAAACAGAAATTT
110517789 AAAAACA-AAATTT
1 AAAAACAGAAATTT
110517802 GAAAA
1 -AAAA
110517807 GACCTCGGCA
Statistics
Matches: 29, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
12 3 0.10
13 11 0.38
14 15 0.52
ACGTcount: A:0.69, C:0.07, G:0.07, T:0.18
Consensus pattern (14 bp):
AAAAACAGAAATTT
Found at i:110517922 original size:73 final size:73
Alignment explanation
Indices: 110517833--110518021 Score: 256
Period size: 75 Copynumber: 2.6 Consensus size: 73
110517823 CTGAGACTCG
*
110517833 ACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAGCAGAAATTGAAAATACCTCAGCGTGTCCC
1 ACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAGCAGAAATTGAAAATACCTCAACGTGTCCC
110517898 GAGGCTCA
66 GAGGCTCA
* *
110517906 ACTCACCTCTCACAATATGAGTTGATTTTTTTGAAAAGCAGAAATTGAAAATATCTCAACGTGTC
1 ACTCACCTCTCGCAATATGAGTTGA--TTTTTGAAAAGCAGAAATTGAAAATACCTCAACGTGTC
** *
110517971 TTGAGGCTTA
64 CCGAGGCTCA
* * * *
110517981 ACTCACATTTCGCAAGATTAGTTGATTTTTG-AAA-CAGAAAT
1 ACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAGCAGAAAT
110518022 AAAAACATTA
Statistics
Matches: 103, Mismatches: 11, Indels: 6
0.86 0.09 0.05
Matches are distributed among these distances:
71 7 0.07
72 3 0.03
73 30 0.29
75 63 0.61
ACGTcount: A:0.33, C:0.19, G:0.17, T:0.31
Consensus pattern (73 bp):
ACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAGCAGAAATTGAAAATACCTCAACGTGTCCC
GAGGCTCA
Found at i:110517928 original size:177 final size:180
Alignment explanation
Indices: 110517608--110517956 Score: 537
Period size: 177 Copynumber: 1.9 Consensus size: 180
110517598 ATTTTAAAAA
*
110517608 AAAAACAAAAATTTGAAACACCTCAGCATGTGACCCGATGCTCAACTCACTTCTCGCAATATAAG
1 AAAAACAAAAATTTGAAACACCTCAGCATGTGACCCGATGCTCAACTCACCTCTCGCAATATAAG
110517673 TTGATTTGTTTGAAAAACAGAAATTGAAAATACCTCAGCGTGTGTCCCGAGGCTCAACTCACCTC
66 TTGATTTGTTTGAAAAACAGAAATTGAAAATACCTCAGCG-GTGTCCCGAGGCTCAACTCACCTC
* *
110517738 TCGCAATATGAGTTGATTTTTTTGAAAAACAGAAATTTAAAAACAGAAATT
130 TCACAATATGAGTTGATTTTTTTGAAAAACAGAAATTGAAAAACAGAAATT
* * * * * *
110517789 AAAAAC-AAAATTTGAAAAGACCTCGGCATGTGGCCTGA-GACTCGACTCACCTCTCGCAATATG
1 AAAAACAAAAATTTG-AAACACCTCAGCATGTGACCCGATG-CTCAACTCACCTCTCGCAATATA
*
110517852 AGTTGA-TT-TTTGAAAAGCAGAAATTGAAAATACCTCAGC-GTGTCCCGAGGCTCAACTCACCT
64 AGTTGATTTGTTTGAAAAACAGAAATTGAAAATACCTCAGCGGTGTCCCGAGGCTCAACTCACCT
*
110517914 CTCACAATATGAGTTGATTTTTTTGAAAAGCAGAAATTGAAAA
129 CTCACAATATGAGTTGATTTTTTTGAAAAACAGAAATTGAAAA
110517957 TATCTCAACG
Statistics
Matches: 155, Mismatches: 11, Indels: 8
0.89 0.06 0.05
Matches are distributed among these distances:
177 63 0.41
179 30 0.19
180 11 0.07
181 51 0.33
ACGTcount: A:0.37, C:0.20, G:0.17, T:0.26
Consensus pattern (180 bp):
AAAAACAAAAATTTGAAACACCTCAGCATGTGACCCGATGCTCAACTCACCTCTCGCAATATAAG
TTGATTTGTTTGAAAAACAGAAATTGAAAATACCTCAGCGGTGTCCCGAGGCTCAACTCACCTCT
CACAATATGAGTTGATTTTTTTGAAAAACAGAAATTGAAAAACAGAAATT
Found at i:110535882 original size:77 final size:78
Alignment explanation
Indices: 110535603--110536111 Score: 791
Period size: 78 Copynumber: 6.6 Consensus size: 78
110535593 TTTCTGTTTC
*
110535603 AAAAATCAACTCATCTTGCGAGAGGTGAGTTGAGCCTCGGGTCACACGCTGAGGTGTTTTCAATT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACACGCTGAGGTGTTTTCAATT
110535668 TCTGTTTTTCAAA
66 TCTGTTTTTCAAA
110535681 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACACGCTGAGGTGTTTTCAATT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACACGCTGAGGTGTTTTCAATT
110535746 TCTGTTTTTCAAAA
66 TCTGTTTTTC-AAA
* * * * * *
110535760 AAAAATCAGCTCATATTGCGAGAGGTTAGTTGAGCCTCAGATCACATGCTAAGGTGTTTTCAATT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACACGCTGAGGTGTTTTCAATT
*
110535825 TCTATTTTTC-AA
66 TCTGTTTTTCAAA
110535837 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACACGCTGAGGTGTTTTCAATT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACACGCTGAGGTGTTTTCAATT
110535902 TCTGTTTTTCAAA
66 TCTGTTTTTCAAA
* *
110535915 AAAAACCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACACGCTAAGGTGTTTTCAATT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACACGCTGAGGTGTTTTCAATT
110535980 TCTGTTTTTC-AA
66 TCTGTTTTTCAAA
* * * *
110535992 AAAAATTAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGGTCACACGCTGAGATATTTTCAATT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACACGCTGAGGTGTTTTCAATT
110536057 TCTG-TTTT----
66 TCTGTTTTTCAAA
* * *
110536065 AAAAATCAACTCACATTACGAGAGGTGAGTTGAGTCCT-AGGTCACAC
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAG-CCTCGGGTCACAC
110536112 ACTAAGTTCG
Statistics
Matches: 401, Mismatches: 27, Indels: 11
0.91 0.06 0.03
Matches are distributed among these distances:
73 39 0.10
74 3 0.01
76 4 0.01
77 135 0.34
78 149 0.37
79 71 0.18
ACGTcount: A:0.28, C:0.18, G:0.22, T:0.32
Consensus pattern (78 bp):
AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACACGCTGAGGTGTTTTCAATT
TCTGTTTTTCAAA
Found at i:110536325 original size:45 final size:45
Alignment explanation
Indices: 110536261--110536372 Score: 188
Period size: 45 Copynumber: 2.5 Consensus size: 45
110536251 TGTTACGGAA
* *
110536261 CCCTGAAGTTGTAGTGGAGCAGACTGAAGATATTAGACCTTATCT
1 CCCTGAAATTGTAGTGGAGCAGACTAAAGATATTAGACCTTATCT
110536306 CCCTGAAATTGTAGTGGAGCAGACTAAAGATATTAGACCTTATCT
1 CCCTGAAATTGTAGTGGAGCAGACTAAAGATATTAGACCTTATCT
* *
110536351 CCCTGAATTTGCAGTGGAGCAG
1 CCCTGAAATTGTAGTGGAGCAG
110536373 TGAAGCAGAA
Statistics
Matches: 63, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
45 63 1.00
ACGTcount: A:0.29, C:0.19, G:0.24, T:0.28
Consensus pattern (45 bp):
CCCTGAAATTGTAGTGGAGCAGACTAAAGATATTAGACCTTATCT
Found at i:110536924 original size:27 final size:27
Alignment explanation
Indices: 110536889--110536961 Score: 112
Period size: 27 Copynumber: 2.7 Consensus size: 27
110536879 CTTTTTTGTG
110536889 GCAAGAATAAAAACATTCCATTTCAAAA
1 GCAA-AATAAAAACATTCCATTTCAAAA
*
110536917 GCAAAATACAAACATTCCATTTCAAAA
1 GCAAAATAAAAACATTCCATTTCAAAA
*
110536944 GCAAAA-AAAAAAATTCCA
1 GCAAAATAAAAACATTCCA
110536962 GCAAAAAAAA
Statistics
Matches: 42, Mismatches: 3, Indels: 2
0.89 0.06 0.04
Matches are distributed among these distances:
26 10 0.24
27 28 0.67
28 4 0.10
ACGTcount: A:0.56, C:0.19, G:0.05, T:0.19
Consensus pattern (27 bp):
GCAAAATAAAAACATTCCATTTCAAAA
Found at i:110538188 original size:17 final size:17
Alignment explanation
Indices: 110538168--110538201 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
110538158 TAAAAAAGAA
110538168 TTCGGGTTTCAAAAATT
1 TTCGGGTTTCAAAAATT
* *
110538185 TTCGTGTTTTAAAAATT
1 TTCGGGTTTCAAAAATT
110538202 CTCATTTTTC
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.29, C:0.09, G:0.15, T:0.47
Consensus pattern (17 bp):
TTCGGGTTTCAAAAATT
Found at i:110543176 original size:8 final size:8
Alignment explanation
Indices: 110543165--110543253 Score: 54
Period size: 8 Copynumber: 10.1 Consensus size: 8
110543155 AAAAATCGTA
110543165 AAAAATAT
1 AAAAATAT
110543173 AAAAATAAT
1 AAAAAT-AT
*
110543182 AAATATAT
1 AAAAATAT
* *
110543190 ATAAATTT
1 AAAAATAT
110543198 AAAAATATT
1 AAAAATA-T
*
110543207 ATAAATTTAT
1 A-AAA-ATAT
110543217 AAAAATAT
1 AAAAATAT
110543225 ATAAAAGTGCA-
1 A-AAAA-T--AT
110543236 AAAAATTAT
1 AAAAA-TAT
110543245 AAAAATAT
1 AAAAATAT
110543253 A
1 A
110543254 CTATAAATAA
Statistics
Matches: 63, Mismatches: 9, Indels: 18
0.70 0.10 0.20
Matches are distributed among these distances:
8 27 0.43
9 21 0.33
10 11 0.17
11 3 0.05
12 1 0.02
ACGTcount: A:0.65, C:0.01, G:0.02, T:0.31
Consensus pattern (8 bp):
AAAAATAT
Found at i:110543191 original size:19 final size:19
Alignment explanation
Indices: 110543169--110543230 Score: 67
Period size: 19 Copynumber: 3.4 Consensus size: 19
110543159 ATCGTAAAAA
*
110543169 ATATAAAAATAATAAATAT
1 ATATAAAATTAATAAATAT
*
110543188 ATATAAATTTAA-AAATAT
1 ATATAAAATTAATAAATAT
* *
110543206 -TAT-AAATTTATAAAAAT
1 ATATAAAATTAATAAATAT
110543223 ATATAAAA
1 ATATAAAA
110543231 GTGCAAAAAA
Statistics
Matches: 35, Mismatches: 5, Indels: 6
0.76 0.11 0.13
Matches are distributed among these distances:
16 5 0.14
17 8 0.23
18 9 0.26
19 13 0.37
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (19 bp):
ATATAAAATTAATAAATAT
Found at i:110543203 original size:18 final size:19
Alignment explanation
Indices: 110543182--110543229 Score: 75
Period size: 18 Copynumber: 2.7 Consensus size: 19
110543172 TAAAAATAAT
110543182 AAATATATATAAATTTA-A
1 AAATATATATAAATTTATA
110543200 AAATAT-TATAAATTTATA
1 AAATATATATAAATTTATA
110543218 AAA-ATATATAAA
1 AAATATATATAAA
110543230 AGTGCAAAAA
Statistics
Matches: 28, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
17 12 0.43
18 16 0.57
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (19 bp):
AAATATATATAAATTTATA
Found at i:110543228 original size:10 final size:10
Alignment explanation
Indices: 110543163--110543253 Score: 65
Period size: 9 Copynumber: 10.0 Consensus size: 10
110543153 TTAAAAATCG
110543163 TAAAAA-ATA
1 TAAAAATATA
110543172 TAAAAATA-A
1 TAAAAATATA
110543181 T--AAATATA
1 TAAAAATATA
*
110543189 TATAAAT-T-
1 TAAAAATATA
110543197 TAAAAATAT-
1 TAAAAATATA
* *
110543206 TATAAATTTA
1 TAAAAATATA
110543216 TAAAAATATA
1 TAAAAATATA
* **
110543226 TAAAAGTGCA
1 TAAAAATATA
110543236 -AAAAAT-TA
1 TAAAAATATA
110543244 TAAAAATATA
1 TAAAAATATA
110543254 CTATAAATAA
Statistics
Matches: 64, Mismatches: 10, Indels: 15
0.72 0.11 0.17
Matches are distributed among these distances:
7 5 0.08
8 9 0.14
9 28 0.44
10 22 0.34
ACGTcount: A:0.65, C:0.01, G:0.02, T:0.32
Consensus pattern (10 bp):
TAAAAATATA
Found at i:110543417 original size:17 final size:16
Alignment explanation
Indices: 110543390--110543428 Score: 60
Period size: 17 Copynumber: 2.3 Consensus size: 16
110543380 TAAAAATTAC
110543390 AAAATATTATAAAAACAT
1 AAAA-ATTATAAAAA-AT
110543408 AAAAATTATAAAAAAT
1 AAAAATTATAAAAAAT
110543424 AAAAA
1 AAAAA
110543429 AAAATGAAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
16 7 0.33
17 10 0.48
18 4 0.19
ACGTcount: A:0.74, C:0.03, G:0.00, T:0.23
Consensus pattern (16 bp):
AAAAATTATAAAAAAT
Found at i:110543429 original size:17 final size:17
Alignment explanation
Indices: 110543379--110543429 Score: 59
Period size: 17 Copynumber: 2.9 Consensus size: 17
110543369 AAGATTATTA
*
110543379 ATAAAAATTACAAAATATT
1 ATAAAAAATA-AAAA-ATT
110543398 ATAAAAACAT-AAAAATT
1 ATAAAAA-ATAAAAAATT
110543415 ATAAAAAATAAAAAA
1 ATAAAAAATAAAAAA
110543430 AAATGAAAAT
Statistics
Matches: 29, Mismatches: 1, Indels: 6
0.81 0.03 0.17
Matches are distributed among these distances:
16 2 0.07
17 15 0.52
18 4 0.14
19 7 0.24
20 1 0.03
ACGTcount: A:0.73, C:0.04, G:0.00, T:0.24
Consensus pattern (17 bp):
ATAAAAAATAAAAAATT
Found at i:110543430 original size:27 final size:26
Alignment explanation
Indices: 110543378--110543440 Score: 72
Period size: 26 Copynumber: 2.4 Consensus size: 26
110543368 GAAGATTATT
* *
110543378 AATAAAAATTACAAAATATTATAAAAA
1 AATAAAAATTACAAAA-AATAAAAAAA
* *
110543405 CATAAAAATTATAAAAAATAAAAAAA
1 AATAAAAATTACAAAAAATAAAAAAA
*
110543431 AATGAAAATT
1 AATAAAAATT
110543441 TATTAAGTAA
Statistics
Matches: 30, Mismatches: 6, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
26 16 0.53
27 14 0.47
ACGTcount: A:0.71, C:0.03, G:0.02, T:0.24
Consensus pattern (26 bp):
AATAAAAATTACAAAAAATAAAAAAA
Found at i:110544933 original size:26 final size:26
Alignment explanation
Indices: 110544904--110544957 Score: 72
Period size: 26 Copynumber: 2.1 Consensus size: 26
110544894 GATATTTTAT
*
110544904 ATTAAAAATAATACAAATATATACAA
1 ATTAAAAATAATACAAATATATAAAA
* * *
110544930 ATTAAAAATATTATAAATTTATAAAA
1 ATTAAAAATAATACAAATATATAAAA
110544956 AT
1 AT
110544958 ATATAAAAGT
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.63, C:0.04, G:0.00, T:0.33
Consensus pattern (26 bp):
ATTAAAAATAATACAAATATATAAAA
Found at i:110544963 original size:10 final size:10
Alignment explanation
Indices: 110544901--110544965 Score: 50
Period size: 9 Copynumber: 6.9 Consensus size: 10
110544891 TATGATATTT
110544901 TATATTAAAAA
1 TATA-TAAAAA
*
110544912 TA-ATACAAA
1 TATATAAAAA
*
110544921 TATAT-ACAA
1 TATATAAAAA
110544930 -AT-TAAAAA
1 TATATAAAAA
*
110544938 TAT-TATAAA
1 TATATAAAAA
*
110544947 TTTATAAAAA
1 TATATAAAAA
110544957 TATATAAAA
1 TATATAAAA
110544966 GTACAAAAAA
Statistics
Matches: 42, Mismatches: 8, Indels: 9
0.71 0.14 0.15
Matches are distributed among these distances:
7 1 0.02
8 5 0.12
9 18 0.43
10 16 0.38
11 2 0.05
ACGTcount: A:0.63, C:0.03, G:0.00, T:0.34
Consensus pattern (10 bp):
TATATAAAAA
Found at i:110544973 original size:18 final size:19
Alignment explanation
Indices: 110544933--110544974 Score: 50
Period size: 18 Copynumber: 2.3 Consensus size: 19
110544923 TATACAAATT
** *
110544933 AAAAATATTATAAATTTAT
1 AAAAATATTATAAAAGTAC
110544952 AAAAATA-TATAAAAGTAC
1 AAAAATATTATAAAAGTAC
110544970 AAAAA
1 AAAAA
110544975 AATAAGAACC
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
18 13 0.65
19 7 0.35
ACGTcount: A:0.67, C:0.02, G:0.02, T:0.29
Consensus pattern (19 bp):
AAAAATATTATAAAAGTAC
Found at i:110546008 original size:19 final size:19
Alignment explanation
Indices: 110545984--110546063 Score: 76
Period size: 19 Copynumber: 4.3 Consensus size: 19
110545974 ATATTTTATA
*
110545984 ATAAAAATAATAAAAAAAT
1 ATAAAAATAATAAAAATAT
**
110546003 ATAAAAATAATACTAATAT
1 ATAAAAATAATAAAAATAT
110546022 ATAAAAAT--TAAAAATAT
1 ATAAAAATAATAAAAATAT
* * *
110546039 -TATAAATTTATAAAAACAT
1 ATA-AAAATAATAAAAATAT
110546058 ATAAAA
1 ATAAAA
110546064 GTGCAAAAAA
Statistics
Matches: 50, Mismatches: 7, Indels: 8
0.77 0.11 0.12
Matches are distributed among these distances:
16 2 0.04
17 11 0.22
19 35 0.70
20 2 0.04
ACGTcount: A:0.69, C:0.03, G:0.00, T:0.29
Consensus pattern (19 bp):
ATAAAAATAATAAAAATAT
Found at i:110546013 original size:28 final size:28
Alignment explanation
Indices: 110545981--110546090 Score: 91
Period size: 28 Copynumber: 4.0 Consensus size: 28
110545971 ATGATATTTT
*
110545981 ATAATAAAAATAATAAAAAAATATAAAA
1 ATAATAAAAATTATAAAAAAATATAAAA
** *
110546009 ATAATACTAA-TATATAAAAAT-TAAAA
1 ATAATAAAAATTATAAAAAAATATAAAA
* * *
110546035 ATATTATAAATTTATAAAAACATATAAAA
1 ATAATA-AAAATTATAAAAAAATATAAAA
* * *
110546064 GTGCA-AAAAATTATAAAAAATTATAAA
1 AT-AATAAAAATTATAAAAAAATATAAA
110546091 TGAAATAAAA
Statistics
Matches: 62, Mismatches: 16, Indels: 8
0.72 0.19 0.09
Matches are distributed among these distances:
26 10 0.16
27 10 0.16
28 35 0.56
29 7 0.11
ACGTcount: A:0.67, C:0.03, G:0.02, T:0.28
Consensus pattern (28 bp):
ATAATAAAAATTATAAAAAAATATAAAA
Found at i:110546034 original size:26 final size:27
Alignment explanation
Indices: 110545981--110546063 Score: 80
Period size: 26 Copynumber: 3.0 Consensus size: 27
110545971 ATGATATTTT
* *
110545981 ATAATAAAAATAATAAAAAAATATAAAA
1 ATAATATAAAT-ATATAAAAATATAAAA
110546009 ATAATACT-AATATATAAAAAT-TAAAA
1 ATAATA-TAAATATATAAAAATATAAAA
* * *
110546035 ATATTATAAATTTATAAAAACATATAAA
1 ATAATATAAATATATAAAAATATA-AAA
110546063 A
1 A
110546064 GTGCAAAAAA
Statistics
Matches: 46, Mismatches: 5, Indels: 8
0.78 0.08 0.14
Matches are distributed among these distances:
25 1 0.02
26 21 0.46
27 11 0.24
28 13 0.28
ACGTcount: A:0.69, C:0.02, G:0.00, T:0.29
Consensus pattern (27 bp):
ATAATATAAATATATAAAAATATAAAA
Found at i:110546081 original size:9 final size:9
Alignment explanation
Indices: 110545984--110546127 Score: 59
Period size: 9 Copynumber: 15.8 Consensus size: 9
110545974 ATATTTTATA
*
110545984 ATAAAAATA
1 ATAAAAATT
*
110545993 ATAAAAAAAT
1 AT-AAAAATT
*
110546003 ATAAAAATA
1 ATAAAAATT
**
110546012 ATACTAATAT
1 ATAAAAAT-T
110546022 ATAAAAATT
1 ATAAAAATT
110546031 A-AAAATATT
1 ATAAAA-ATT
*
110546040 AT-AAATTT
1 ATAAAAATT
*
110546048 ATAAAAACAT
1 ATAAAAA-TT
* *
110546058 ATAAAAGTGC
1 ATAAAAAT-T
110546068 A-AAAAATT
1 ATAAAAATT
110546076 ATAAAAAATT
1 AT-AAAAATT
110546086 ATAAATGAA--
1 ATAAA--AATT
110546095 AT-AAAA-T
1 ATAAAAATT
*
110546102 ATATAAATT
1 ATAAAAATT
*
110546111 ATTAAAATT
1 ATAAAAATT
110546120 ATCAAAAA
1 AT-AAAAA
110546128 ATTGCAAAAA
Statistics
Matches: 99, Mismatches: 21, Indels: 29
0.66 0.14 0.19
Matches are distributed among these distances:
6 2 0.02
7 2 0.02
8 14 0.14
9 45 0.45
10 34 0.34
11 2 0.02
ACGTcount: A:0.66, C:0.03, G:0.02, T:0.29
Consensus pattern (9 bp):
ATAAAAATT
Found at i:110546211 original size:19 final size:19
Alignment explanation
Indices: 110546184--110546237 Score: 58
Period size: 19 Copynumber: 2.9 Consensus size: 19
110546174 TACAAAAAAT
110546184 AAAAA-ATTTAAATTAT-G
1 AAAAATATTTAAATTATAG
*
110546201 AAAAAATATTTAAAATATAG
1 -AAAAATATTTAAATTATAG
* *
110546221 AAAATTATTAAAATTAT
1 AAAAATATTTAAATTAT
110546238 TAATAAAATT
Statistics
Matches: 30, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
18 5 0.17
19 24 0.80
20 1 0.03
ACGTcount: A:0.61, C:0.00, G:0.04, T:0.35
Consensus pattern (19 bp):
AAAAATATTTAAATTATAG
Found at i:110547023 original size:13 final size:13
Alignment explanation
Indices: 110546987--110547032 Score: 57
Period size: 13 Copynumber: 3.9 Consensus size: 13
110546977 ATGAAAAGTG
110546987 TATACATAATA-A
1 TATACATAATATA
110546999 TAT---TAA-ATA
1 TATACATAATATA
110547008 TATACATAATATA
1 TATACATAATATA
110547021 TATACATAATAT
1 TATACATAATAT
110547033 TAAAATGAAT
Statistics
Matches: 29, Mismatches: 0, Indels: 9
0.76 0.00 0.24
Matches are distributed among these distances:
8 1 0.03
9 7 0.24
12 6 0.21
13 15 0.52
ACGTcount: A:0.54, C:0.07, G:0.00, T:0.39
Consensus pattern (13 bp):
TATACATAATATA
Found at i:110547045 original size:25 final size:26
Alignment explanation
Indices: 110547018--110547064 Score: 73
Period size: 23 Copynumber: 1.9 Consensus size: 26
110547008 TATACATAAT
110547018 ATATATAC-ATA-ATATTA-AAATGA
1 ATATATACAATATATATTAGAAATGA
110547041 ATATATACAATATATATTAGAAAT
1 ATATATACAATATATATTAGAAAT
110547065 ATTAATAACA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
23 8 0.38
24 3 0.14
25 6 0.29
26 4 0.19
ACGTcount: A:0.55, C:0.04, G:0.04, T:0.36
Consensus pattern (26 bp):
ATATATACAATATATATTAGAAATGA
Found at i:110547045 original size:34 final size:30
Alignment explanation
Indices: 110546987--110547057 Score: 79
Period size: 34 Copynumber: 2.2 Consensus size: 30
110546977 ATGAAAAGTG
* *
110546987 TATACATAATAATATTAAATATATACATAA
1 TATATATAATAATATTAAATATATACACAA
*
110547017 TATATATACATAATATTAAAATGAATATATACAA
1 TATATATA-ATAATATT-AAAT--ATATACACAA
110547051 TATATAT
1 TATATAT
110547058 TAGAAATATT
Statistics
Matches: 34, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
30 7 0.21
31 8 0.24
32 4 0.12
34 15 0.44
ACGTcount: A:0.55, C:0.06, G:0.01, T:0.38
Consensus pattern (30 bp):
TATATATAATAATATTAAATATATACACAA
Done.