Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A06
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 115140250
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2234201 characters in sequence are not A, C, G, or T
File 333 of 345
Found at i:111236520 original size:25 final size:25
Alignment explanation
Indices: 111236499--111236545 Score: 73
Period size: 23 Copynumber: 2.0 Consensus size: 25
111236489 TGAATTGAAA
111236499 ATTG-ATTGAAAA-GTG-GAAATTG
1 ATTGAATTGAAAATGTGAGAAATTG
111236521 ATTGAATTGAAAATGTGAGAAATTG
1 ATTGAATTGAAAATGTGAGAAATTG
111236546 CGGCTGAATT
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
22 4 0.18
23 8 0.36
24 3 0.14
25 7 0.32
ACGTcount: A:0.43, C:0.00, G:0.26, T:0.32
Consensus pattern (25 bp):
ATTGAATTGAAAATGTGAGAAATTG
Found at i:111236757 original size:37 final size:39
Alignment explanation
Indices: 111236666--111236759 Score: 102
Period size: 38 Copynumber: 2.4 Consensus size: 39
111236656 GACCTTGAGT
* **
111236666 CGATGAGACACTGGGTGTCACTATTTTACTTCGGATAGATT
1 CGATGAGACACT-GG-GTCACCATTTTACTTCGGATAGAGC
** *
111236707 CGATGAGGTACTGGGT-ACCATTTTACTTCGGCTAG-GC
1 CGATGAGACACTGGGTCACCATTTTACTTCGGATAGAGC
111236744 CGATGAGACACTGGGT
1 CGATGAGACACTGGGT
111236760 GTCAACTTTG
Statistics
Matches: 45, Mismatches: 8, Indels: 4
0.79 0.14 0.07
Matches are distributed among these distances:
37 14 0.31
38 17 0.38
39 2 0.04
40 2 0.04
41 10 0.22
ACGTcount: A:0.22, C:0.19, G:0.29, T:0.30
Consensus pattern (39 bp):
CGATGAGACACTGGGTCACCATTTTACTTCGGATAGAGC
Found at i:111238132 original size:25 final size:25
Alignment explanation
Indices: 111238086--111238161 Score: 106
Period size: 25 Copynumber: 3.2 Consensus size: 25
111238076 AACCCTAATC
111238086 CCACCTACTCCACCA-CC---TTGG
1 CCACCTACTCCACCACCCTTGTTGG
111238107 CCACCTACTCCACCACCCTTGTTGG
1 CCACCTACTCCACCACCCTTGTTGG
* *
111238132 CCTCCTACTCCACCACCATTGTTGG
1 CCACCTACTCCACCACCCTTGTTGG
111238157 CCACC
1 CCACC
111238162 CACCTTGGCC
Statistics
Matches: 48, Mismatches: 3, Indels: 4
0.87 0.05 0.07
Matches are distributed among these distances:
21 15 0.31
22 2 0.04
25 31 0.65
ACGTcount: A:0.17, C:0.50, G:0.11, T:0.22
Consensus pattern (25 bp):
CCACCTACTCCACCACCCTTGTTGG
Found at i:111238618 original size:3 final size:3
Alignment explanation
Indices: 111238583--111238673 Score: 59
Period size: 3 Copynumber: 30.3 Consensus size: 3
111238573 GAGCTTTGTT
* * *
111238583 TTA TTT TTA TT- TTA TT- TTA TTA TTT TTA CTA TTA TT- TATA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T-TA TTA
111238626 TTA TTA TT- TCTCA TGTA TATA TTA TTA TT- TATA TTA TTA TTA -TA
1 TTA TTA TTA T-T-A T-TA T-TA TTA TTA TTA T-TA TTA TTA TTA TTA
111238670 TTA T
1 TTA T
111238674 ATATGCCCTC
Statistics
Matches: 70, Mismatches: 8, Indels: 20
0.71 0.08 0.20
Matches are distributed among these distances:
2 9 0.13
3 52 0.74
4 7 0.10
5 2 0.03
ACGTcount: A:0.29, C:0.03, G:0.01, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:111238660 original size:12 final size:12
Alignment explanation
Indices: 111238593--111238673 Score: 78
Period size: 12 Copynumber: 6.8 Consensus size: 12
111238583 TTATTTTTAT
*
111238593 TTTATTTTATTA
1 TTTATATTATTA
* *
111238605 TTTTTACTATTA
1 TTTATATTATTA
111238617 TTTATATTATTA
1 TTTATATTATTA
* *
111238629 -TTAT-TTCTCA
1 TTTATATTATTA
111238639 TGTATATATTATTA
1 T-T-TATATTATTA
111238653 TTTATATTATTA
1 TTTATATTATTA
111238665 -TTATATTAT
1 TTTATATTAT
111238674 ATATGCCCTC
Statistics
Matches: 56, Mismatches: 9, Indels: 9
0.76 0.12 0.12
Matches are distributed among these distances:
10 4 0.07
11 13 0.23
12 30 0.54
13 4 0.07
14 5 0.09
ACGTcount: A:0.30, C:0.04, G:0.01, T:0.65
Consensus pattern (12 bp):
TTTATATTATTA
Found at i:111251018 original size:87 final size:87
Alignment explanation
Indices: 111250926--111251095 Score: 261
Period size: 87 Copynumber: 2.0 Consensus size: 87
111250916 CAGATTGAAG
* * ** *
111250926 ATTTACAGATCTTAATCCCCTAAGCAGTAGGGAAACAGATCGAA-GGTGATGAGTCTTAAACCCC
1 ATTTACAGATCTTAAACCCCTAAGCAGTAGGGAAACAGATC-AATGATGACAAGCCTTAAACCCC
111250990 TAAGCAGTAGGGTAACAGGCTAA
65 TAAGCAGTAGGGTAACAGGCTAA
* *
111251013 ATTTACAGATCTTAAACCCCTAAGCAGTAGGGAAACGGATCAATGATGACAAGCCTTAACCCCCT
1 ATTTACAGATCTTAAACCCCTAAGCAGTAGGGAAACAGATCAATGATGACAAGCCTTAAACCCCT
111251078 AAGCAGTAGGGTAACAGG
66 AAGCAGTAGGGTAACAGG
111251096 TTGAAAATCA
Statistics
Matches: 75, Mismatches: 7, Indels: 2
0.89 0.08 0.02
Matches are distributed among these distances:
86 2 0.03
87 73 0.97
ACGTcount: A:0.36, C:0.21, G:0.22, T:0.21
Consensus pattern (87 bp):
ATTTACAGATCTTAAACCCCTAAGCAGTAGGGAAACAGATCAATGATGACAAGCCTTAAACCCCT
AAGCAGTAGGGTAACAGGCTAA
Found at i:111251040 original size:43 final size:44
Alignment explanation
Indices: 111250930--111251095 Score: 153
Period size: 44 Copynumber: 3.8 Consensus size: 44
111250920 TTGAAGATTT
* * * **
111250930 ACAGA-TCTTAATCCCCTAAGCAGTAGGGAAACAGATCGAAGGTG
1 ACAGAGTCTTAAACCCCTAAGCAGTAGGGAAACAG-GCTAAATTG
* * *
111250974 A-TGAGTCTTAAACCCCTAAGCAGTAGGGTAACAGGCTAAATTT
1 ACAGAGTCTTAAACCCCTAAGCAGTAGGGAAACAGGCTAAATTG
* *
111251017 ACAGA-TCTTAAACCCCTAAGCAGTAGGGAAAC-GGATCAATGATG
1 ACAGAGTCTTAAACCCCTAAGCAGTAGGGAAACAGGCTAAAT--TG
* * *
111251061 ACA-AGCCTTAACCCCCTAAGCAGTAGGGTAACAGG
1 ACAGAGTCTTAAACCCCTAAGCAGTAGGGAAACAGG
111251096 TTGAAAATCA
Statistics
Matches: 100, Mismatches: 16, Indels: 11
0.79 0.13 0.09
Matches are distributed among these distances:
42 6 0.06
43 34 0.34
44 58 0.58
45 2 0.02
ACGTcount: A:0.36, C:0.22, G:0.23, T:0.19
Consensus pattern (44 bp):
ACAGAGTCTTAAACCCCTAAGCAGTAGGGAAACAGGCTAAATTG
Found at i:111251613 original size:25 final size:25
Alignment explanation
Indices: 111251567--111251642 Score: 115
Period size: 25 Copynumber: 3.2 Consensus size: 25
111251557 AACCCTAATC
111251567 CCACCTACTCCACCA-CC---TTGG
1 CCACCTACTCCACCACCCTTGTTGG
111251588 CCACCTACTCCACCACCCTTGTTGG
1 CCACCTACTCCACCACCCTTGTTGG
*
111251613 CCACCTACTCCACCACCATTGTTGG
1 CCACCTACTCCACCACCCTTGTTGG
111251638 CCACC
1 CCACC
111251643 CACCTTGGCC
Statistics
Matches: 50, Mismatches: 1, Indels: 4
0.91 0.02 0.07
Matches are distributed among these distances:
21 15 0.30
22 2 0.04
25 33 0.66
ACGTcount: A:0.18, C:0.50, G:0.11, T:0.21
Consensus pattern (25 bp):
CCACCTACTCCACCACCCTTGTTGG
Found at i:111252100 original size:3 final size:3
Alignment explanation
Indices: 111252065--111252152 Score: 53
Period size: 3 Copynumber: 29.3 Consensus size: 3
111252055 GAGCTTTGTT
* * *
111252065 TTA TTT TTA TT- TTA TT- TTA TTA TTT TTA CTA TTA TT- TATA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T-TA TTA
111252108 TTA TTA TT- TCTCA TGTA TATA TTA TTA TT- TATA TTA TTA -TA TTA
1 TTA TTA TTA T-T-A T-TA T-TA TTA TTA TTA T-TA TTA TTA TTA TTA
111252152 T
1 T
111252153 ATATGCCCTC
Statistics
Matches: 67, Mismatches: 8, Indels: 20
0.71 0.08 0.21
Matches are distributed among these distances:
2 9 0.13
3 49 0.73
4 7 0.10
5 2 0.03
ACGTcount: A:0.28, C:0.03, G:0.01, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:111252142 original size:12 final size:12
Alignment explanation
Indices: 111252075--111252154 Score: 74
Period size: 12 Copynumber: 6.6 Consensus size: 12
111252065 TTATTTTTAT
*
111252075 TTTATTTTATTA
1 TTTATATTATTA
* *
111252087 TTTTTACTATTA
1 TTTATATTATTA
111252099 TTTATATTATTA
1 TTTATATTATTA
* *
111252111 -TTAT-TTCTCA
1 TTTATATTATTA
111252121 TGTATATATTATTA
1 T-T-TATATTATTA
111252135 TTTATATTATTA
1 TTTATATTATTA
111252147 TATTATAT
1 T-TTATAT
111252155 ATGCCCTCTC
Statistics
Matches: 54, Mismatches: 9, Indels: 9
0.75 0.12 0.12
Matches are distributed among these distances:
10 4 0.07
11 4 0.07
12 31 0.57
13 10 0.19
14 5 0.09
ACGTcount: A:0.30, C:0.04, G:0.01, T:0.65
Consensus pattern (12 bp):
TTTATATTATTA
Found at i:111252404 original size:16 final size:17
Alignment explanation
Indices: 111252378--111252419 Score: 52
Period size: 16 Copynumber: 2.6 Consensus size: 17
111252368 ATATATTAGT
* *
111252378 GTATATTTTTATGTATA
1 GTATATATTTATATATA
111252395 -TATATATTTATATATA
1 GTATATATTTATATATA
111252411 GTAT-TATTT
1 GTATATATTT
111252420 TTTATTACTT
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
16 19 0.86
17 3 0.14
ACGTcount: A:0.33, C:0.00, G:0.07, T:0.60
Consensus pattern (17 bp):
GTATATATTTATATATA
Found at i:111252528 original size:23 final size:23
Alignment explanation
Indices: 111252485--111252529 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
111252475 TTATTATTAT
* *
111252485 TATTATATAATAGTGTGTATTTC
1 TATTATATAATAGTATATATTTC
111252508 TATTATATACATA-TATATATTT
1 TATTATATA-ATAGTATATATTT
111252530 TATATAGTAT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 16 0.84
24 3 0.16
ACGTcount: A:0.36, C:0.04, G:0.07, T:0.53
Consensus pattern (23 bp):
TATTATATAATAGTATATATTTC
Found at i:111254131 original size:38 final size:38
Alignment explanation
Indices: 111254080--111254155 Score: 152
Period size: 38 Copynumber: 2.0 Consensus size: 38
111254070 ATCAATGAGG
111254080 TCCTGATCTAAAATGTAAAATTTCTCAATTATTAGCTT
1 TCCTGATCTAAAATGTAAAATTTCTCAATTATTAGCTT
111254118 TCCTGATCTAAAATGTAAAATTTCTCAATTATTAGCTT
1 TCCTGATCTAAAATGTAAAATTTCTCAATTATTAGCTT
111254156 ACATTTCATA
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 38 1.00
ACGTcount: A:0.34, C:0.16, G:0.08, T:0.42
Consensus pattern (38 bp):
TCCTGATCTAAAATGTAAAATTTCTCAATTATTAGCTT
Found at i:111260176 original size:26 final size:25
Alignment explanation
Indices: 111260147--111260212 Score: 80
Period size: 26 Copynumber: 2.6 Consensus size: 25
111260137 CAAAATGAAA
111260147 ATTTATT-TTTTTACAAATACTATATT
1 ATTTATTATTTTTA-AAAT-CTATATT
*
111260173 ATTTATATATTTTTAAAATTTATATT
1 ATTTAT-TATTTTTAAAATCTATATT
*
111260199 TTTTATTATTTTTA
1 ATTTATTATTTTTA
111260213 TCGTGTTTAG
Statistics
Matches: 36, Mismatches: 2, Indels: 5
0.84 0.05 0.12
Matches are distributed among these distances:
25 8 0.22
26 17 0.47
27 5 0.14
28 6 0.17
ACGTcount: A:0.33, C:0.03, G:0.00, T:0.64
Consensus pattern (25 bp):
ATTTATTATTTTTAAAATCTATATT
Found at i:111263378 original size:16 final size:17
Alignment explanation
Indices: 111263347--111263378 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
111263337 ATAAAAAACT
111263347 ATTCGTACACTATATAG
1 ATTCGTACACTATATAG
111263364 ATTCGTACA-TATATA
1 ATTCGTACACTATATA
111263379 ATGATGTTAT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 6 0.40
17 9 0.60
ACGTcount: A:0.38, C:0.16, G:0.09, T:0.38
Consensus pattern (17 bp):
ATTCGTACACTATATAG
Found at i:111273165 original size:45 final size:45
Alignment explanation
Indices: 111273097--111273491 Score: 444
Period size: 45 Copynumber: 8.9 Consensus size: 45
111273087 TAGGATTCCA
* * *
111273097 ATATGTGCTCTCGTGTAAGACCACGCCTGGGACGTTGGCATCGAT
1 ATATGTGTTTTCGTGTAAGACCACGTCTGGGACGTTGGCATCGAT
* * * *
111273142 ATATGTTTTTTGGTGTAAAACCACGTTTGGGACGTTGGCATCGAT
1 ATATGTGTTTTCGTGTAAGACCACGTCTGGGACGTTGGCATCGAT
** * *
111273187 ATATGTGTTTTCGTGTAAGACCAAATTTGGGACATTGGCATCGAT
1 ATATGTGTTTTCGTGTAAGACCACGTCTGGGACGTTGGCATCGAT
* **
111273232 ATATGTGTTTTCGTGTAAGACCATGTCTGGGTTGTTGGCATCGAT
1 ATATGTGTTTTCGTGTAAGACCACGTCTGGGACGTTGGCATCGAT
**
111273277 ATATGTGTTTTCGTGTAAGATTACGTCTGGGACGTTGGCATCGAT
1 ATATGTGTTTTCGTGTAAGACCACGTCTGGGACGTTGGCATCGAT
*
111273322 ATATGTGTTTTCGTGTAAGATCACGTCTGGGACGTTGGCATCGAT
1 ATATGTGTTTTCGTGTAAGACCACGTCTGGGACGTTGGCATCGAT
* * ** * *
111273367 ATATGTGGTTACGTGTAAGACCATTTCTGGGACATCGGCATCG-T
1 ATATGTGTTTTCGTGTAAGACCACGTCTGGGACGTTGGCATCGAT
* **
111273411 AT-T-TG-ATTCGTGTAAGACCTTGTCTGGGACAG-TGGCATCG--
1 ATATGTGTTTTCGTGTAAGACCACGTCTGGGAC-GTTGGCATCGAT
* * ** * *
111273451 ATATGAGATAGCATGTAAGATCACGTCTGGGACGTTGGCAT
1 ATATGTGTTTTCGTGTAAGACCACGTCTGGGACGTTGGCAT
111273492 TGTTCGATAT
Statistics
Matches: 299, Mismatches: 46, Indels: 12
0.84 0.13 0.03
Matches are distributed among these distances:
40 2 0.01
41 29 0.10
42 4 0.01
43 25 0.08
44 3 0.01
45 236 0.79
ACGTcount: A:0.22, C:0.16, G:0.28, T:0.34
Consensus pattern (45 bp):
ATATGTGTTTTCGTGTAAGACCACGTCTGGGACGTTGGCATCGAT
Found at i:111274699 original size:3 final size:3
Alignment explanation
Indices: 111274693--111274719 Score: 54
Period size: 3 Copynumber: 9.0 Consensus size: 3
111274683 ATCTCAAAAT
111274693 TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA
111274720 CAACGCAATT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 24 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:111274956 original size:14 final size:14
Alignment explanation
Indices: 111274939--111274974 Score: 63
Period size: 14 Copynumber: 2.5 Consensus size: 14
111274929 TTATATTTTG
111274939 AATTTAAAATTTAA
1 AATTTAAAATTTAA
111274953 AATTTAAAATTTAA
1 AATTTAAAATTTAA
111274967 AATATTAA
1 AAT-TTAA
111274975 CTAACCTGTT
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
14 17 0.81
15 4 0.19
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (14 bp):
AATTTAAAATTTAA
Found at i:111275086 original size:30 final size:29
Alignment explanation
Indices: 111275028--111275084 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 29
111275018 TTAGGCGGCC
*
111275028 ATGTGTTTGATAAACTATTTAAAATTTTAA
1 ATGTGTTTGATAAAC-ATATAAAATTTTAA
111275058 ATGTGTTTGATAATA-ATATAAAATTTT
1 ATGTGTTTGATAA-ACATATAAAATTTT
111275085 TACCAAAAAA
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
29 11 0.44
30 13 0.52
31 1 0.04
ACGTcount: A:0.40, C:0.02, G:0.11, T:0.47
Consensus pattern (29 bp):
ATGTGTTTGATAAACATATAAAATTTTAA
Found at i:111275212 original size:27 final size:27
Alignment explanation
Indices: 111275153--111275212 Score: 68
Period size: 28 Copynumber: 2.2 Consensus size: 27
111275143 AAGTTAGTTT
*
111275153 TATTTTATTAAAAATTAAAATATATTA
1 TATTTTATTAAAAATTAAAATATACTA
* *
111275180 TCATTTTTTTAAAATATTCAAAT-TACTA
1 T-ATTTTATTAAAA-ATTAAAATATACTA
111275208 TATTT
1 TATTT
111275213 ATTTCAGAAC
Statistics
Matches: 28, Mismatches: 3, Indels: 4
0.80 0.09 0.11
Matches are distributed among these distances:
27 5 0.18
28 16 0.57
29 7 0.25
ACGTcount: A:0.43, C:0.05, G:0.00, T:0.52
Consensus pattern (27 bp):
TATTTTATTAAAAATTAAAATATACTA
Found at i:111284154 original size:21 final size:21
Alignment explanation
Indices: 111284130--111284198 Score: 70
Period size: 21 Copynumber: 3.3 Consensus size: 21
111284120 CATTACCGCA
111284130 TTGAATCGATT-ACTTATTGTT
1 TTGAATCGATTCA-TTATTGTT
* * * *
111284151 TTGACTCGACTCTTTGTTG-T
1 TTGAATCGATTCATTATTGTT
111284171 TTGAATCGATTCATTATTGTT
1 TTGAATCGATTCATTATTGTT
*
111284192 TTAAATC
1 TTGAATC
111284199 AATTATTTTT
Statistics
Matches: 37, Mismatches: 9, Indels: 4
0.74 0.18 0.08
Matches are distributed among these distances:
20 16 0.43
21 21 0.57
ACGTcount: A:0.22, C:0.13, G:0.14, T:0.51
Consensus pattern (21 bp):
TTGAATCGATTCATTATTGTT
Found at i:111284190 original size:20 final size:20
Alignment explanation
Indices: 111284130--111284192 Score: 65
Period size: 20 Copynumber: 3.1 Consensus size: 20
111284120 CATTACCGCA
111284130 TTGAATCGATT-ACTTATTGTT
1 TTGAATCGATTCA-TTATTG-T
* * * *
111284151 TTGACTCGACTCTTTGTTGT
1 TTGAATCGATTCATTATTGT
111284171 TTGAATCGATTCATTATTGT
1 TTGAATCGATTCATTATTGT
111284191 TT
1 TT
111284193 TAAATCAATT
Statistics
Matches: 33, Mismatches: 8, Indels: 3
0.75 0.18 0.07
Matches are distributed among these distances:
20 19 0.58
21 14 0.42
ACGTcount: A:0.19, C:0.13, G:0.16, T:0.52
Consensus pattern (20 bp):
TTGAATCGATTCATTATTGT
Found at i:111284212 original size:41 final size:41
Alignment explanation
Indices: 111284130--111284213 Score: 98
Period size: 41 Copynumber: 2.0 Consensus size: 41
111284120 CATTACCGCA
* * * *
111284130 TTGAATCGATTACTTATTGTTTTGACTCGACTCTTTGTTGT
1 TTGAATCGATTACTTATTGTTTTAAATCAACTATTTGTTGT
* *
111284171 TTGAATCGATT-CATTATTGTTTTAAATCAATTATTTTTTGT
1 TTGAATCGATTAC-TTATTGTTTTAAATCAACTATTTGTTGT
111284212 TT
1 TT
111284214 AACTTGATTC
Statistics
Matches: 36, Mismatches: 6, Indels: 2
0.82 0.14 0.05
Matches are distributed among these distances:
40 1 0.03
41 35 0.97
ACGTcount: A:0.21, C:0.11, G:0.13, T:0.55
Consensus pattern (41 bp):
TTGAATCGATTACTTATTGTTTTAAATCAACTATTTGTTGT
Found at i:111285282 original size:20 final size:20
Alignment explanation
Indices: 111285249--111285286 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
111285239 AGATAAAATG
*
111285249 GTTTTTCCTGTAAAGATCCAA
1 GTTTTTCCTATAAA-ATCCAA
111285270 GTTTTT-CTATAAAATCC
1 GTTTTTCCTATAAAATCC
111285287 CATGTTTTTT
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
19 4 0.25
20 6 0.38
21 6 0.38
ACGTcount: A:0.29, C:0.18, G:0.11, T:0.42
Consensus pattern (20 bp):
GTTTTTCCTATAAAATCCAA
Found at i:111287373 original size:11 final size:11
Alignment explanation
Indices: 111287357--111287385 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
111287347 GTAATGTTAA
111287357 AATATATACAT
1 AATATATACAT
111287368 AATATATACAT
1 AATATATACAT
111287379 -ATATATA
1 AATATATA
111287386 TGAAGTAAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
10 7 0.39
11 11 0.61
ACGTcount: A:0.55, C:0.07, G:0.00, T:0.38
Consensus pattern (11 bp):
AATATATACAT
Found at i:111288028 original size:21 final size:19
Alignment explanation
Indices: 111288004--111288066 Score: 53
Period size: 18 Copynumber: 3.4 Consensus size: 19
111287994 ATATATATAC
111288004 ATAAATAATAATAAGTAAAGA
1 ATAAAT-ATAATAAGTAAA-A
* *
111288025 ATAAATATAGTGAA--AATA
1 ATAAATATAAT-AAGTAAAA
111288043 ATAAATATAA-AAGTAAAA
1 ATAAATATAATAAGTAAAA
111288061 A-AAATA
1 ATAAATA
111288067 ATATATAAAC
Statistics
Matches: 35, Mismatches: 4, Indels: 10
0.71 0.08 0.20
Matches are distributed among these distances:
16 2 0.06
17 5 0.14
18 14 0.40
19 2 0.06
20 4 0.11
21 8 0.23
ACGTcount: A:0.68, C:0.00, G:0.08, T:0.24
Consensus pattern (19 bp):
ATAAATATAATAAGTAAAA
Found at i:111288233 original size:85 final size:86
Alignment explanation
Indices: 111288080--111288241 Score: 317
Period size: 86 Copynumber: 1.9 Consensus size: 86
111288070 TATAAACAAA
111288080 ATTAAATAAAACGATGATATAAATAATAATGTGTTAAAAATATAATAATAAATATAATAAGGTAA
1 ATTAAATAAAACGATGATATAAATAATAATGTGTTAAAAATATAATAATAAATATAATAAGGTAA
111288145 AATAATAAAAAAATATAGTAT
66 AATAATAAAAAAATATAGTAT
111288166 ATTAAATAAAACGATGATATAAATAATAATGTGTTAAAAATA-AATAATAAATATAATAAGGTAA
1 ATTAAATAAAACGATGATATAAATAATAATGTGTTAAAAATATAATAATAAATATAATAAGGTAA
111288230 AATAATAAAAAA
66 AATAATAAAAAA
111288242 GGGTATATTT
Statistics
Matches: 76, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
85 34 0.45
86 42 0.55
ACGTcount: A:0.62, C:0.01, G:0.08, T:0.29
Consensus pattern (86 bp):
ATTAAATAAAACGATGATATAAATAATAATGTGTTAAAAATATAATAATAAATATAATAAGGTAA
AATAATAAAAAAATATAGTAT
Found at i:111288280 original size:3 final size:3
Alignment explanation
Indices: 111288274--111288304 Score: 53
Period size: 3 Copynumber: 10.3 Consensus size: 3
111288264 AAACATATAT
*
111288274 TAA TAA TAA TAA TAA TAA TAA TAA GAA TAA T
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA T
111288305 GTAGAAAGTA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.65, C:0.00, G:0.03, T:0.32
Consensus pattern (3 bp):
TAA
Found at i:111288297 original size:85 final size:83
Alignment explanation
Indices: 111288080--111288241 Score: 243
Period size: 85 Copynumber: 1.9 Consensus size: 83
111288070 TATAAACAAA
**
111288080 ATTAAATAAAACGATGATATAAATAATAATGTGTTAAAAATATAATAATAAATATAATAAGGTAA
1 ATTAAATAAAACGATGATATAAATAATAA-GTAAT-AAAA-ATAATAATAAATATAATAAGGTAA
111288145 AATAATAAAAAAATATAGTAT
63 AATAATAAAAAAATATAGTAT
**
111288166 ATTAAATAAAACGATGATATAAATAATAATGTGTTAAAAATAAATAATAAATATAATAAGGTAAA
1 ATTAAATAAAACGATGATATAAATAATAA-GTAATAAAAAT-AATAATAAATATAATAAGGTAAA
111288231 ATAATAAAAAA
64 ATAATAAAAAA
111288242 GGGTATATTT
Statistics
Matches: 75, Mismatches: 0, Indels: 3
0.96 0.00 0.04
Matches are distributed among these distances:
84 2 0.03
85 38 0.51
86 35 0.47
ACGTcount: A:0.62, C:0.01, G:0.08, T:0.29
Consensus pattern (83 bp):
ATTAAATAAAACGATGATATAAATAATAAGTAATAAAAATAATAATAAATATAATAAGGTAAAAT
AATAAAAAAATATAGTAT
Found at i:111289265 original size:11 final size:11
Alignment explanation
Indices: 111289243--111289362 Score: 59
Period size: 11 Copynumber: 10.5 Consensus size: 11
111289233 TCCAGCCAGG
111289243 GGGCCGGTCACC
1 GGGCC-GTCACC
*
111289255 GGTCCGTCACC
1 GGGCCGTCACC
* * *
111289266 GGACCTTCGCC
1 GGGCCGTCACC
*
111289277 GGCGCCGGCCACC
1 GG-GCC-GTCACC
111289290 GGGGCCGGTCACC
1 -GGGCC-GTCACC
*
111289303 GGTCCGTCACC
1 GGGCCGTCACC
111289314 -GG-C--CACC
1 GGGCCGTCACC
111289321 GGGGCCGGTCACC
1 -GGGCC-GTCACC
*
111289334 GGTCCGTCACC
1 GGGCCGTCACC
* *
111289345 GGACCTTCACC
1 GGGCCGTCACC
111289356 GGCGCCG
1 GG-GCCG
111289363 GCGCCGGCCA
Statistics
Matches: 82, Mismatches: 16, Indels: 20
0.69 0.14 0.17
Matches are distributed among these distances:
7 4 0.05
9 3 0.04
10 2 0.02
11 39 0.48
12 16 0.20
13 16 0.20
14 2 0.02
ACGTcount: A:0.09, C:0.45, G:0.35, T:0.11
Consensus pattern (11 bp):
GGGCCGTCACC
Found at i:111289319 original size:31 final size:31
Alignment explanation
Indices: 111289281--111289346 Score: 132
Period size: 31 Copynumber: 2.1 Consensus size: 31
111289271 TTCGCCGGCG
111289281 CCGGCCACCGGGGCCGGTCACCGGTCCGTCA
1 CCGGCCACCGGGGCCGGTCACCGGTCCGTCA
111289312 CCGGCCACCGGGGCCGGTCACCGGTCCGTCA
1 CCGGCCACCGGGGCCGGTCACCGGTCCGTCA
111289343 CCGG
1 CCGG
111289347 ACCTTCACCG
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 35 1.00
ACGTcount: A:0.09, C:0.45, G:0.36, T:0.09
Consensus pattern (31 bp):
CCGGCCACCGGGGCCGGTCACCGGTCCGTCA
Found at i:111289411 original size:4 final size:4
Alignment explanation
Indices: 111289398--111289443 Score: 53
Period size: 4 Copynumber: 12.0 Consensus size: 4
111289388 GGAAAGGTAA
*
111289398 ATTT -TTT ATTT ATTTT ATTT ATTT TTTT A-TT -TTT ATTT ATTT ATTT
1 ATTT ATTT ATTT A-TTT ATTT ATTT ATTT ATTT ATTT ATTT ATTT ATTT
111289444 TAAAACGTAT
Statistics
Matches: 36, Mismatches: 2, Indels: 8
0.78 0.04 0.17
Matches are distributed among these distances:
3 7 0.19
4 25 0.69
5 4 0.11
ACGTcount: A:0.20, C:0.00, G:0.00, T:0.80
Consensus pattern (4 bp):
ATTT
Found at i:111289436 original size:22 final size:21
Alignment explanation
Indices: 111289399--111289444 Score: 74
Period size: 22 Copynumber: 2.1 Consensus size: 21
111289389 GAAAGGTAAA
111289399 TTTTTTATTTATTTTATTTAT
1 TTTTTTATTTATTTTATTTAT
*
111289420 TTTTTTATTTTTATTTATTTAT
1 TTTTTTATTTAT-TTTATTTAT
111289442 TTT
1 TTT
111289445 AAAACGTATA
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
21 11 0.48
22 12 0.52
ACGTcount: A:0.17, C:0.00, G:0.00, T:0.83
Consensus pattern (21 bp):
TTTTTTATTTATTTTATTTAT
Found at i:111289445 original size:9 final size:9
Alignment explanation
Indices: 111289401--111289443 Score: 63
Period size: 9 Copynumber: 4.9 Consensus size: 9
111289391 AAGGTAAATT
111289401 TTTTATTTA
1 TTTTATTTA
111289410 TTTTATTTA
1 TTTTATTTA
111289419 TTTT-TTTA
1 TTTTATTTA
111289427 TTTTTATTTA
1 -TTTTATTTA
111289437 -TTTATTT
1 TTTTATTT
111289444 TAAAACGTAT
Statistics
Matches: 32, Mismatches: 0, Indels: 5
0.86 0.00 0.14
Matches are distributed among these distances:
8 11 0.34
9 17 0.53
10 4 0.12
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (9 bp):
TTTTATTTA
Found at i:111292770 original size:19 final size:20
Alignment explanation
Indices: 111292732--111292771 Score: 55
Period size: 19 Copynumber: 2.0 Consensus size: 20
111292722 TTCTCTTATA
*
111292732 TAAAATATATTTCAATGTTT
1 TAAAATATATTTCAAAGTTT
*
111292752 TAAAAT-TATTTGAAAGTTT
1 TAAAATATATTTCAAAGTTT
111292771 T
1 T
111292772 GTTGGGTTAC
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
19 12 0.67
20 6 0.33
ACGTcount: A:0.40, C:0.03, G:0.07, T:0.50
Consensus pattern (20 bp):
TAAAATATATTTCAAAGTTT
Found at i:111294925 original size:13 final size:14
Alignment explanation
Indices: 111294895--111294969 Score: 50
Period size: 14 Copynumber: 5.4 Consensus size: 14
111294885 TTAGGAAACG
111294895 TACATAAAAATATA
1 TACATAAAAATATA
*
111294909 TACATAAAAA-ATT
1 TACATAAAAATATA
111294922 TACA-ACAATAATATA
1 TACATA-AA-AATATA
* ** *
111294937 -AAATAATGATATG
1 TACATAAAAATATA
111294950 TACA-AAAATATATA
1 TACATAAAA-ATATA
111294964 TACATA
1 TACATA
111294970 TGTACATAAA
Statistics
Matches: 44, Mismatches: 10, Indels: 13
0.66 0.15 0.19
Matches are distributed among these distances:
12 1 0.02
13 14 0.32
14 25 0.57
15 4 0.09
ACGTcount: A:0.60, C:0.08, G:0.03, T:0.29
Consensus pattern (14 bp):
TACATAAAAATATA
Found at i:111295364 original size:13 final size:13
Alignment explanation
Indices: 111295340--111295380 Score: 57
Period size: 13 Copynumber: 3.2 Consensus size: 13
111295330 ATGTATATAT
111295340 AAAGAAAGAAAAA
1 AAAGAAAGAAAAA
*
111295353 AACA-ACAGAAAAA
1 AA-AGAAAGAAAAA
111295366 AAAGAAAGAAAAA
1 AAAGAAAGAAAAA
111295379 AA
1 AA
111295381 GATTCGAAAG
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
12 1 0.04
13 22 0.92
14 1 0.04
ACGTcount: A:0.83, C:0.05, G:0.12, T:0.00
Consensus pattern (13 bp):
AAAGAAAGAAAAA
Found at i:111295706 original size:17 final size:18
Alignment explanation
Indices: 111295672--111295712 Score: 66
Period size: 17 Copynumber: 2.3 Consensus size: 18
111295662 TTTTTTGAGG
111295672 GGGGGTTAGGTTTTTTTTT
1 GGGGGTTAGG-TTTTTTTT
111295691 GGGGGTTAGG-TTTTTTT
1 GGGGGTTAGGTTTTTTTT
111295708 GGGGG
1 GGGGG
111295713 GGCTTAATGG
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
17 12 0.55
19 10 0.45
ACGTcount: A:0.05, C:0.00, G:0.46, T:0.49
Consensus pattern (18 bp):
GGGGGTTAGGTTTTTTTT
Found at i:111295713 original size:19 final size:19
Alignment explanation
Indices: 111295670--111295714 Score: 72
Period size: 19 Copynumber: 2.4 Consensus size: 19
111295660 TTTTTTTTGA
111295670 GGGGGGGTTAGGTTTTTTT
1 GGGGGGGTTAGGTTTTTTT
**
111295689 TTGGGGGTTAGGTTTTTTT
1 GGGGGGGTTAGGTTTTTTT
111295708 GGGGGGG
1 GGGGGGG
111295715 CTTAATGGGC
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 22 1.00
ACGTcount: A:0.04, C:0.00, G:0.51, T:0.44
Consensus pattern (19 bp):
GGGGGGGTTAGGTTTTTTT
Found at i:111296466 original size:88 final size:83
Alignment explanation
Indices: 111296372--111296931 Score: 324
Period size: 88 Copynumber: 6.7 Consensus size: 83
111296362 AACAGAAATC
* *
111296372 GAAAATAGCTCAGCGCGTGAGCCAAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAA
1 GAAAATACCTC-GCACGTGAGCCAAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAA
*
111296437 ACTTAACTTGAAAAGCAGATTTT
65 A---AAC-TGAAAAACAGATTTT
* * ** *
111296460 GAAAATACCTCGATATGTGA-CTGGAGGTTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTGA
1 GAAAATACCTCG-CACGTGAGC-CAAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGA
* * *
111296523 AAAACAGAAATTAAAAGA--CT
64 AAAACTGAAA--AACAGATTTT
* * ** *** **
111296543 -CAACTCAACTCTCGCA-GAAATTAAAAAACTCAACTCACCTCTCGCAATATGAGTTGAATTTTT
1 GAAAAT--AC-CTCGCACGTGA-GCCAAGGCTCAACTCACCTCTCGCAATATGAGTTG-A-TTTT
**
111296606 TTG-AAAA---AAAAACAGAAATT
60 TTGAAAAACTGAAAAACAGATTTT
* *
111296626 GAAAATAGCTCAGCACGTGAGCCAAGGCTCAACTCACTTCTCGCAATATGAGTTGA-TTTTTGAA
1 GAAAATACCTC-GCACGTGAGCCAAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTG--
*
111296690 AACAGAATTTGAAAAACAGATTTT
63 AA-A-AA-CTGAAAAACAGATTTT
* * * * *
111296714 GAAAATACCTCGACATGTGACCCGAGGCTCAACTCACATCTCGCAATGTGAGTTGATTTTTTTGA
1 GAAAATACCTCG-CACGTGAGCCAAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTGA
* **
111296779 AAAA-T---ATA-A-ATTGA
64 AAAACTGAAAAACAGATTTT
* *** * *
111296793 AAAAATACCTCAGTGTGTGATCTGAA-GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTT--
1 GAAAATACCTC-GCACGTGAGC-CAAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGA
* **
111296855 -----TGAAAGACAGAAATT
64 AAAACTGAAAAACAGATTTT
*
111296870 GAAAATAGCTCAGCACGTGAGCCAAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTT
1 GAAAATACCTC-GCACGTGAGCCAAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTT
111296932 TTGAAAGGCA
Statistics
Matches: 369, Mismatches: 66, Indels: 85
0.71 0.13 0.16
Matches are distributed among these distances:
72 1 0.00
75 2 0.01
76 3 0.01
77 53 0.14
78 6 0.02
79 53 0.14
80 3 0.01
81 11 0.03
82 37 0.10
83 14 0.04
84 40 0.11
85 9 0.02
86 6 0.02
87 19 0.05
88 106 0.29
90 6 0.02
ACGTcount: A:0.35, C:0.19, G:0.17, T:0.28
Consensus pattern (83 bp):
GAAAATACCTCGCACGTGAGCCAAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAA
AACTGAAAAACAGATTTT
Found at i:111296563 original size:30 final size:30
Alignment explanation
Indices: 111296527--111296588 Score: 106
Period size: 30 Copynumber: 2.1 Consensus size: 30
111296517 TTTTGAAAAA
*
111296527 CAGAAATTAAAAGACTCAACTCAACTCTCG
1 CAGAAATTAAAAAACTCAACTCAACTCTCG
*
111296557 CAGAAATTAAAAAACTCAACTCACCTCTCG
1 CAGAAATTAAAAAACTCAACTCAACTCTCG
111296587 CA
1 CA
111296589 ATATGAGTTG
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.44, C:0.29, G:0.08, T:0.19
Consensus pattern (30 bp):
CAGAAATTAAAAAACTCAACTCAACTCTCG
Found at i:111296707 original size:14 final size:14
Alignment explanation
Indices: 111296684--111296718 Score: 54
Period size: 14 Copynumber: 2.6 Consensus size: 14
111296674 TGAGTTGATT
111296684 TTTG-AAAACAGAA
1 TTTGAAAAACAGAA
*
111296697 TTTGAAAAACAGAT
1 TTTGAAAAACAGAA
111296711 TTTGAAAA
1 TTTGAAAA
111296719 TACCTCGACA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
13 4 0.20
14 16 0.80
ACGTcount: A:0.51, C:0.06, G:0.14, T:0.29
Consensus pattern (14 bp):
TTTGAAAAACAGAA
Found at i:111296906 original size:77 final size:77
Alignment explanation
Indices: 111296697--111296952 Score: 300
Period size: 79 Copynumber: 3.3 Consensus size: 77
111296687 GAAAACAGAA
** * *
111296697 TTTGAAAAACAGATTTTGAAAATACCTC-GACATGTGACCCGAGGCTCAACTCACATCTCGCAAT
1 TTTGAAAAACAGAAATTGAAAATACCTCAG-CATGTGACCCAAGGCTCAACTCACCTCTCGCAAT
*
111296761 GTGAGTTGATTTT
65 ATGAGTTGATTTT
* * ** **
111296774 TTTGAAAAATATAAATTGAAAAAATACCTCAGTGTGTGATCTGAA-GCTCAACTCACCTCTCGCA
1 TTTGAAAAACAGAAATTG--AAAATACCTCAGCATGTGA-CCCAAGGCTCAACTCACCTCTCGCA
111296838 ATATGAGTTGATTTT
63 ATATGAGTTGATTTT
* * * *
111296853 TTTGAAAGACAGAAATTGAAAATAGCTCAGCACGTGAGCCAAGGCTCAACTCACCTCTCGCAATA
1 TTTGAAAAACAGAAATTGAAAATACCTCAGCATGTGACCCAAGGCTCAACTCACCTCTCGCAATA
111296918 TGAGTTGATTTTT
66 TGAGTTGA-TTTT
**
111296931 TTTGAAAGGCAGAAATTGAAAA
1 TTTGAAAAACAGAAATTGAAAA
111296953 ACGGAAATTG
Statistics
Matches: 151, Mismatches: 22, Indels: 11
0.82 0.12 0.06
Matches are distributed among these distances:
76 2 0.01
77 59 0.39
78 25 0.17
79 62 0.41
80 3 0.02
ACGTcount: A:0.35, C:0.18, G:0.18, T:0.29
Consensus pattern (77 bp):
TTTGAAAAACAGAAATTGAAAATACCTCAGCATGTGACCCAAGGCTCAACTCACCTCTCGCAATA
TGAGTTGATTTT
Found at i:111297015 original size:92 final size:90
Alignment explanation
Indices: 111296854--111297041 Score: 236
Period size: 92 Copynumber: 2.1 Consensus size: 90
111296844 GTTGATTTTT
* * * *
111296854 TTGAAAGACAGAAATTGAAAATAGCTCAGCACGTGAGCCAAGGCTCAACTCACCTCTCGCAATAT
1 TTGAAAAACAGAAATTGAAAATACCTCAGCACGTGAGCCAAGGCTCAACTCACCTCTCACAATAC
111296919 GAGTTGATTTTTTTTGA-AAGGCAGAAA
66 GAGTTGA-TTTTTTTGACAA--CAGAAA
* * ** * *
111296946 TTGAAAAACGGAAATTGAAAATACCTCGGCGTGTGA-CCTGAGGCTCAACTCGCCTCTCACAATA
1 TTGAAAAACAGAAATTGAAAATACCTCAGCACGTGAGCC-AAGGCTCAACTCACCTCTCACAATA
111297010 CGAGTTGATTTTTTTGACAACAGAAA
65 CGAGTTGATTTTTTTGACAACAGAAA
111297036 TTGAAA
1 TTGAAA
111297042 TTACCTCAGC
Statistics
Matches: 84, Mismatches: 10, Indels: 6
0.84 0.10 0.06
Matches are distributed among these distances:
90 12 0.14
91 11 0.13
92 61 0.73
ACGTcount: A:0.35, C:0.19, G:0.20, T:0.26
Consensus pattern (90 bp):
TTGAAAAACAGAAATTGAAAATACCTCAGCACGTGAGCCAAGGCTCAACTCACCTCTCACAATAC
GAGTTGATTTTTTTGACAACAGAAA
Found at i:111297116 original size:14 final size:14
Alignment explanation
Indices: 111297097--111297131 Score: 61
Period size: 14 Copynumber: 2.5 Consensus size: 14
111297087 GTTGATTTTT
111297097 TTGAAAAACAGAAA
1 TTGAAAAACAGAAA
*
111297111 TTGAAAAACGGAAA
1 TTGAAAAACAGAAA
111297125 TTGAAAA
1 TTGAAAA
111297132 TACCTCGGCG
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.60, C:0.06, G:0.17, T:0.17
Consensus pattern (14 bp):
TTGAAAAACAGAAA
Found at i:111297197 original size:89 final size:89
Alignment explanation
Indices: 111297032--111297205 Score: 253
Period size: 89 Copynumber: 2.0 Consensus size: 89
111297022 TTTGACAACA
* * * *
111297032 GAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTTACCGCTCGCAATATGAGTTGATTTTT
1 GAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCACTCGCAATACGAGTTGATTTTT
111297097 TTGAAAAACAGAAATTGAAAAACG
66 TTGAAAAACAGAAATTGAAAAACG
* *
111297121 GAAATTGAAAATACCTCGGCGTGTGACCTGAGGCTCAACTCGCCACTCGCAATACGAGTTGA-TT
1 GAAATTGAAAATACCTCAGCGTGT--CCTGAGGCTCAACTCACCACTCGCAATACGAGTTGATTT
*
111297185 TTTTG-ACAACAGAAATTGAAA
64 TTTTGAAAAACAGAAATTGAAA
111297206 TTACCTCAGC
Statistics
Matches: 76, Mismatches: 7, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
89 37 0.49
90 7 0.09
91 32 0.42
ACGTcount: A:0.34, C:0.20, G:0.20, T:0.26
Consensus pattern (89 bp):
GAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCACTCGCAATACGAGTTGATTTTT
TTGAAAAACAGAAATTGAAAAACG
Found at i:111297245 original size:73 final size:74
Alignment explanation
Indices: 111297121--111297643 Score: 392
Period size: 77 Copynumber: 6.7 Consensus size: 74
111297111 TTGAAAAACG
* *
111297121 GAAATTGAAAATACCTCGGCGTGTGACCTGAGGCTCAACTCGCCACTCGCAATACGAGTTGATTT
1 GAAATTGAAAATACCTCAGCGTGT-ACCTGAGGCTCAACTCACCACTCGCAATACGAGTTGATTT
111297186 TTTGACAACA
65 TTTGACAACA
* * *
111297196 GAAATTGAAATTACCTCAGCGTGT-CCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
1 GAAATTGAAAATACCTCAGCGTGTACCTGAGGCTCAACTCACCACTCGCAATACGAGTTGA---T
* *
111297260 TTTTTGAAAGATA
63 TTTTTGACA-ACA
** * **** * * * *
111297273 GAAATTGAAAAATGGAAAT-TGAAAATACCTCGGCGTGTGACCTGAGGCTCAACTCGCCTCTCGC
1 GAAATTG-AAAAT--ACCTCAGCGTGTACCT----GAG-G--CTCA-ACTC-A----CCACTCGC
111297337 AATACGAGTTGATTTTTTTTGACAACA
50 AATACGAGTTGA--TTTTTTGACAACA
* * *
111297364 GAAATTAAAAATACCTCAGCGTGT-CCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
1 GAAATTGAAAATACCTCAGCGTGTACCTGAGGCTCAACTCACCACTCGCAATACGAGTTGATTTT
111297428 TTGAAACATACGA
66 TTG--ACA-AC-A
* * * *
111297441 AAAATTGACAATACCTCAGCGTGT-CCCGAGGCTCAACTCACCTCTCGCAATACGAGTTGATTTT
1 GAAATTGAAAATACCTCAGCGTGTACCTGAGGCTCAACTCACCACTCGCAATACGAGTTGA-TTT
111297505 TTTGACAACA
65 TTTGACAACA
* * * *
111297515 GAAATTAAAAATATCTCAGCGTGT-CCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
1 GAAATTGAAAATACCTCAGCGTGTACCTGAGGCTCAACTCACCACTCGCAATACGAGTTGA-TTT
*
111297579 TTTAAACATACGA
65 TTT-GACA-AC-A
* * * * **
111297592 AAAATTGACAACACCTCAGCGTGT-CCCGAGGCTCAACTCACTTCTCGCAATA
1 GAAATTGAAAATACCTCAGCGTGTACCTGAGGCTCAACTCACCACTCGCAATA
111297644 TGAATTGAAT
Statistics
Matches: 366, Mismatches: 52, Indels: 58
0.77 0.11 0.12
Matches are distributed among these distances:
73 40 0.11
74 62 0.17
75 49 0.13
76 16 0.04
77 111 0.30
78 11 0.03
79 3 0.01
80 8 0.02
81 3 0.01
83 1 0.00
84 4 0.01
85 1 0.00
87 3 0.01
88 8 0.02
89 3 0.01
90 5 0.01
91 8 0.02
92 11 0.03
93 19 0.05
ACGTcount: A:0.31, C:0.23, G:0.18, T:0.28
Consensus pattern (74 bp):
GAAATTGAAAATACCTCAGCGTGTACCTGAGGCTCAACTCACCACTCGCAATACGAGTTGATTTT
TTGACAACA
Found at i:111297282 original size:14 final size:14
Alignment explanation
Indices: 111297263--111297297 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 14
111297253 TGATTTTTTT
*
111297263 TTGAAAGATAGAAA
1 TTGAAAAATAGAAA
*
111297277 TTGAAAAATGGAAA
1 TTGAAAAATAGAAA
111297291 TTGAAAA
1 TTGAAAA
111297298 TACCTCGGCG
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.57, C:0.00, G:0.20, T:0.23
Consensus pattern (14 bp):
TTGAAAAATAGAAA
Found at i:111297338 original size:166 final size:166
Alignment explanation
Indices: 111296794--111297581 Score: 1135
Period size: 166 Copynumber: 4.8 Consensus size: 166
111296784 ATAAATTGAA
* * * * * * *
111296794 AAAATACCTCAGTGTGTGATCTGAAGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAA
1 AAAATACCTCGGCGTGTGACCTGAGGCTCAACTCGCCTCTCGCAATACGAGTTGATTTTTTTGAC
* * *
111296859 AGACAGAAATTGAAAATAGCTCAGCACGTGAGCC-AAGGCTCAACTCACCTCTCGCAATATGAGT
66 A-ACAGAAATTGAAAATACCTCAG--CGTG-TCCTGAGGCTCAACTCACCTCTCGCAATATGAGT
*
111296923 TGATTTTTTTTGAAAGGCAGAAATTGAAAAACGGAAATTG
127 TGATTTTTTTTGAAAGACAGAAATTGAAAAACGGAAATTG
*
111296963 AAAATACCTCGGCGTGTGACCTGAGGCTCAACTCGCCTCTCACAATACGAGTTGATTTTTTTGAC
1 AAAATACCTCGGCGTGTGACCTGAGGCTCAACTCGCCTCTCGCAATACGAGTTGATTTTTTTGAC
* * *
111297028 AACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTTACCGCTCGCAATATGAGTTGA-
66 AACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
*
111297092 TTTTTTTGAAAAACAGAAATTGAAAAACGGAAATTG
131 TTTTTTTGAAAGACAGAAATTGAAAAACGGAAATTG
*
111297128 AAAATACCTCGGCGTGTGACCTGAGGCTCAACTCGCCACTCGCAATACGAGTTGA-TTTTTTGAC
1 AAAATACCTCGGCGTGTGACCTGAGGCTCAACTCGCCTCTCGCAATACGAGTTGATTTTTTTGAC
*
111297192 AACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
66 AACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-
* *
111297257 TTTTTTTTGAAAGATAGAAATTGAAAAATGGAAATTG
130 TTTTTTTTGAAAGACAGAAATTGAAAAACGGAAATTG
111297294 AAAATACCTCGGCGTGTGACCTGAGGCTCAACTCGCCTCTCGCAATACGAGTTGATTTTTTTTGA
1 AAAATACCTCGGCGTGTGACCTGAGGCTCAACTCGCCTCTCGCAATACGAGTTGA-TTTTTTTGA
*
111297359 CAACAGAAATTAAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA
65 CAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA
**
111297424 --TTTTTTG-AA-AC----A-T-ACGAA---AAATTG
130 TTTTTTTTGAAAGACAGAAATTGAAAAACGGAAATTG
* * * *
111297448 ACAATACCTCAGCGTGT--CCCGAGGCTCAACTCACCTCTCGCAATACGAGTTGATTTTTTTGAC
1 AAAATACCTCGGCGTGTGACCTGAGGCTCAACTCGCCTCTCGCAATACGAGTTGATTTTTTTGAC
* *
111297511 AACAGAAATTAAAAATATCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
66 AACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
111297576 TTTTTT
131 TTTTTT
111297582 AAACATACGA
Statistics
Matches: 578, Mismatches: 34, Indels: 30
0.90 0.05 0.05
Matches are distributed among these distances:
151 73 0.13
152 34 0.06
153 5 0.01
154 21 0.04
157 3 0.01
158 1 0.00
159 1 0.00
163 1 0.00
164 73 0.13
165 96 0.17
166 121 0.21
168 91 0.16
169 58 0.10
ACGTcount: A:0.31, C:0.21, G:0.19, T:0.29
Consensus pattern (166 bp):
AAAATACCTCGGCGTGTGACCTGAGGCTCAACTCGCCTCTCGCAATACGAGTTGATTTTTTTGAC
AACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
TTTTTTTGAAAGACAGAAATTGAAAAACGGAAATTG
Found at i:111297367 original size:91 final size:90
Alignment explanation
Indices: 111297196--111297375 Score: 265
Period size: 93 Copynumber: 2.0 Consensus size: 90
111297186 TTTGACAACA
* *
111297196 GAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
1 GAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATACGAGTTGATTTTT
*
111297261 TTTTGAAAGATAGAAATTGAAAAATG
66 TTTTGAAAGACAGAAATT-AAAAATG
* *
111297287 GAAATTGAAAATACCTCGGCGTGTGACCTGAGGCTCAACTCGCCTCTCGCAATACGAGTTGA-TT
1 GAAATTGAAAATACCTCAGCGTGT--CCTGAGGCTCAACTCACCTCTCGCAATACGAGTTGATTT
*
111297351 TTTTTTGACA-ACAGAAATTAAAAAT
64 TTTTTTGAAAGACAGAAATTAAAAAT
111297376 ACCTCAGCGT
Statistics
Matches: 81, Mismatches: 6, Indels: 5
0.88 0.07 0.05
Matches are distributed among these distances:
90 6 0.07
91 30 0.37
92 11 0.14
93 34 0.42
ACGTcount: A:0.33, C:0.18, G:0.19, T:0.30
Consensus pattern (90 bp):
GAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATACGAGTTGATTTTT
TTTTGAAAGACAGAAATTAAAAATG
Found at i:111297454 original size:77 final size:75
Alignment explanation
Indices: 111297288--111297660 Score: 473
Period size: 77 Copynumber: 4.9 Consensus size: 75
111297278 TGAAAAATGG
* * *
111297288 AAATTGAAAATACCTCGGCGTGTGACCTGAGGCTCAACTCGCCTCTCGCAATACGAGTTGATTTT
1 AAATTGAAAATACCTCAGCGTGT--CCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
*** *
111297353 TTTTGACAACAG
64 TTGAAACAACAA
*
111297365 AAATTAAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTT
1 AAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTT
111297430 GAAACATACGAA
66 GAAACA-AC-AA
* * *
111297442 AAATTGACAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATACGAGTTGATTTTTT
1 AAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTT
*
111297507 TG--ACAACAG
65 TGAAACAACAA
* *
111297516 AAATTAAAAATATCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTT
1 AAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTT
*
111297581 TAAACATACGAA
66 GAAACA-AC-AA
* * * * * *
111297593 AAATTGACAACACCTCAGCGTGTCCCGAGGCTCAACTCACTTCTCGCAATATGAATTGA-ATTTT
1 AAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTT
111297657 GAAA
66 GAAA
111297661 TAAAACATCA
Statistics
Matches: 260, Mismatches: 29, Indels: 15
0.86 0.10 0.05
Matches are distributed among these distances:
73 6 0.02
74 55 0.21
75 48 0.18
76 14 0.05
77 130 0.50
78 7 0.03
ACGTcount: A:0.31, C:0.24, G:0.17, T:0.28
Consensus pattern (75 bp):
AAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTT
GAAACAACAA
Found at i:111297551 original size:151 final size:152
Alignment explanation
Indices: 111297288--111297643 Score: 615
Period size: 151 Copynumber: 2.3 Consensus size: 152
111297278 TGAAAAATGG
* * * *
111297288 AAATTGAAAATACCTCGGCGTGTGACCTGAGGCTCAACTCGCCTCTCGCAATACGAGTTGATTTT
1 AAATTGACAATACCTCAGCGTGT--CCCGAGGCTCAACTCACCTCTCGCAATACGAGTTGATTTT
111297353 TTTTGACAACAGAAATTAAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATG
64 TTTTGACAACAGAAATTAAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATG
111297418 AGTTGATTTTTTGAAACATACGAA
129 AGTTGATTTTTTGAAACATACGAA
111297442 AAATTGACAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATACGAGTTGA-TTTTT
1 AAATTGACAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATACGAGTTGATTTTTT
*
111297506 TTGACAACAGAAATTAAAAATATCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAG
66 TTGACAACAGAAATTAAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAG
*
111297571 TTGATTTTTTTAAACATACGAA
131 TTGATTTTTTGAAACATACGAA
* *
111297593 AAATTGACAACACCTCAGCGTGTCCCGAGGCTCAACTCACTTCTCGCAATA
1 AAATTGACAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATA
111297644 TGAATTGAAT
Statistics
Matches: 194, Mismatches: 8, Indels: 3
0.95 0.04 0.01
Matches are distributed among these distances:
151 139 0.72
152 34 0.18
154 21 0.11
ACGTcount: A:0.31, C:0.25, G:0.17, T:0.28
Consensus pattern (152 bp):
AAATTGACAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATACGAGTTGATTTTTT
TTGACAACAGAAATTAAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAG
TTGATTTTTTGAAACATACGAA
Found at i:111310130 original size:30 final size:30
Alignment explanation
Indices: 111310096--111310158 Score: 101
Period size: 30 Copynumber: 2.1 Consensus size: 30
111310086 ATTTATTTTA
111310096 TTGTTAATTTTCTTATTATTTTA-AAGGCAT
1 TTGTTAATTTTCTTATTATTTTAGAA-GCAT
*
111310126 TTGTTAATTTTTTTATTATTTTAGAAGCAT
1 TTGTTAATTTTCTTATTATTTTAGAAGCAT
111310156 TTG
1 TTG
111310159 CTTGTTAAGT
Statistics
Matches: 31, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
30 29 0.94
31 2 0.06
ACGTcount: A:0.25, C:0.05, G:0.11, T:0.59
Consensus pattern (30 bp):
TTGTTAATTTTCTTATTATTTTAGAAGCAT
Found at i:111310584 original size:17 final size:18
Alignment explanation
Indices: 111310553--111310586 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
111310543 TTTTAAAAAT
*
111310553 TATAAAATTATAAATTAG
1 TATAAAAATATAAATTAG
111310571 TATAAAAATA-AAATTA
1 TATAAAAATATAAATTA
111310587 TTTTAAAAGT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.62, C:0.00, G:0.03, T:0.35
Consensus pattern (18 bp):
TATAAAAATATAAATTAG
Found at i:111310738 original size:20 final size:20
Alignment explanation
Indices: 111310713--111310753 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 20
111310703 AATAAATATT
**
111310713 TTTTAAATAATGATAATTAA
1 TTTTAAATAAAAATAATTAA
111310733 TTTTAAATAAAAATAATTAA
1 TTTTAAATAAAAATAATTAA
111310753 T
1 T
111310754 GAATTAATTT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.54, C:0.00, G:0.02, T:0.44
Consensus pattern (20 bp):
TTTTAAATAAAAATAATTAA
Found at i:111315684 original size:63 final size:64
Alignment explanation
Indices: 111315581--111315706 Score: 227
Period size: 63 Copynumber: 2.0 Consensus size: 64
111315571 GGCATGGCCC
* *
111315581 CCAAAAATAAAACTAGGTCCCGTAATATTTTTTTATTATTAAAAATAATATT-AAAAATTATTT
1 CCAAAAATAAAACTAGGTCCCGCAATATTTTTTTAGTATTAAAAATAATATTAAAAAATTATTT
111315644 CCAAAAATAAAACTAGGTCCCGCAATATTTTTTTAGTATTAAAAATAATATTAAAAAATTATT
1 CCAAAAATAAAACTAGGTCCCGCAATATTTTTTTAGTATTAAAAATAATATTAAAAAATTATT
111315707 CTTGATAAAA
Statistics
Matches: 60, Mismatches: 2, Indels: 1
0.95 0.03 0.02
Matches are distributed among these distances:
63 50 0.83
64 10 0.17
ACGTcount: A:0.47, C:0.10, G:0.06, T:0.37
Consensus pattern (64 bp):
CCAAAAATAAAACTAGGTCCCGCAATATTTTTTTAGTATTAAAAATAATATTAAAAAATTATTT
Found at i:111319649 original size:20 final size:20
Alignment explanation
Indices: 111319624--111319680 Score: 73
Period size: 19 Copynumber: 2.9 Consensus size: 20
111319614 CCTTTTACTA
111319624 AAAAAATTAAAATTAATTCT
1 AAAAAATTAAAATTAATTCT
*
111319644 AAAAAA-TAAAATTAATTTT
1 AAAAAATTAAAATTAATTCT
*
111319663 TAAAAATATAAAA-TAATT
1 AAAAAAT-TAAAATTAATT
111319681 GATCAAAATA
Statistics
Matches: 33, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
19 17 0.52
20 11 0.33
21 5 0.15
ACGTcount: A:0.63, C:0.02, G:0.00, T:0.35
Consensus pattern (20 bp):
AAAAAATTAAAATTAATTCT
Found at i:111319668 original size:21 final size:21
Alignment explanation
Indices: 111319621--111319680 Score: 72
Period size: 20 Copynumber: 3.0 Consensus size: 21
111319611 TTTCCTTTTA
111319621 CTAAAAAAATTAAAATTAA-TT
1 CTAAAAAAA-TAAAATTAATTT
111319642 CT-AAAAAATAAAATTAATTT
1 CTAAAAAAATAAAATTAATTT
* *
111319662 TTAAAAATATAAAA-TAATT
1 CTAAAAAAATAAAATTAATT
111319681 GATCAAAATA
Statistics
Matches: 35, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
19 9 0.26
20 14 0.40
21 12 0.34
ACGTcount: A:0.62, C:0.03, G:0.00, T:0.35
Consensus pattern (21 bp):
CTAAAAAAATAAAATTAATTT
Found at i:111320529 original size:62 final size:62
Alignment explanation
Indices: 111320432--111320555 Score: 248
Period size: 62 Copynumber: 2.0 Consensus size: 62
111320422 TTTAGGGATC
111320432 GAAATTAAGTTATATAATTTTATGAGAGTTAAAATGTAATTTCACGATTATACTAATTTATA
1 GAAATTAAGTTATATAATTTTATGAGAGTTAAAATGTAATTTCACGATTATACTAATTTATA
111320494 GAAATTAAGTTATATAATTTTATGAGAGTTAAAATGTAATTTCACGATTATACTAATTTATA
1 GAAATTAAGTTATATAATTTTATGAGAGTTAAAATGTAATTTCACGATTATACTAATTTATA
111320556 TTTTTATGAT
Statistics
Matches: 62, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
62 62 1.00
ACGTcount: A:0.42, C:0.05, G:0.11, T:0.42
Consensus pattern (62 bp):
GAAATTAAGTTATATAATTTTATGAGAGTTAAAATGTAATTTCACGATTATACTAATTTATA
Found at i:111332503 original size:46 final size:46
Alignment explanation
Indices: 111332436--111332736 Score: 413
Period size: 46 Copynumber: 6.7 Consensus size: 46
111332426 ATGGCAACTG
111332436 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAA
1 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAA
111332482 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACC-----TG---
1 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAA
111332520 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAA
1 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAA
* *
111332566 TGTGTAAGACCATGGTTGAAAGATACCATGACAACCTGATATGAGA
1 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAA
* *
111332612 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACGTGACATGAAA
1 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAA
* ** * *
111332658 AGAATAAGACCATGGTTGAAAGATACCATGGCAACATGACA-GAAAA
1 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATG-AAA
* * * *
111332704 TGAGTAAGACCATAGTTGAAAGACACTATGGCA
1 TGTGTAAGACCATGGTTGAAAGATACCATGGCA
111332737 TCACGTCAAA
Statistics
Matches: 231, Mismatches: 15, Indels: 18
0.88 0.06 0.07
Matches are distributed among these distances:
38 36 0.16
41 2 0.01
43 2 0.01
45 1 0.00
46 190 0.82
ACGTcount: A:0.38, C:0.16, G:0.24, T:0.22
Consensus pattern (46 bp):
TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAA
Found at i:111332531 original size:38 final size:40
Alignment explanation
Indices: 111332398--111332696 Score: 304
Period size: 46 Copynumber: 7.0 Consensus size: 40
111332388 CTGATATGAA
111332398 ATGTGTAAGACCATGGTTGAAAGATACCATGGCAA-C-TG
1 ATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCATG
111332436 -TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATG
1 ATGTGTAAGACCATGGTTGAAAGATACCATGGCAACC----ATG
111332479 AAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACC-TG
1 --ATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCATG
111332520 -TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATG
1 ATGTGTAAGACCATGGTTGAAAGATACCATGGCAACC----ATG
*
111332563 AAATGTGTAAGACCATGGTTGAAAGATACCATGACAACCTGATATGAG
1 --ATGTGTAAGACCATGGTTGAAAGATACCATGGCAACC----AT--G
111332611 ATGTGTAAGACCATGGTTGAAAGATACCATGGCAACGTGACATG
1 ATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC----CATG
* **
111332655 AAAAGAATAAGACCATGGTTGAAAGATACCATGGCAA-CATG
1 --ATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCATG
111332696 A
1 A
111332697 CAGAAAATGA
Statistics
Matches: 231, Mismatches: 5, Indels: 49
0.81 0.02 0.17
Matches are distributed among these distances:
37 34 0.15
38 37 0.16
39 1 0.00
41 6 0.03
43 4 0.02
44 1 0.00
46 146 0.63
48 1 0.00
50 1 0.00
ACGTcount: A:0.37, C:0.16, G:0.25, T:0.23
Consensus pattern (40 bp):
ATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCATG
Found at i:111332562 original size:84 final size:84
Alignment explanation
Indices: 111332388--111332692 Score: 477
Period size: 84 Copynumber: 3.5 Consensus size: 84
111332378 GATGTGCTCT
111332388 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAA-CTGTGTGTAAGACCATGGT
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGTGTGTAAGACCATGGT
111332452 TGAAAGATACCATGGCAAC
66 TGAAAGATACCATGGCAAC
111332471 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGTGTGTAAGACCATGGT
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGTGTGTAAGACCATGGT
111332536 TGAAAGATACCATGGCAAC
66 TGAAAGATACCATGGCAAC
*
111332555 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGACAACCTGATATGAGATGTGTAAG
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACC-----T--G-TGTGTAAG
111332620 ACCATGGTTGAAAGATACCATGGCAAC
58 ACCATGGTTGAAAGATACCATGGCAAC
* * * **
111332647 GTGACATGAAAAGAATAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
111332693 ATGACAGAAA
Statistics
Matches: 206, Mismatches: 7, Indels: 9
0.93 0.03 0.04
Matches are distributed among these distances:
83 45 0.22
84 84 0.41
89 1 0.00
91 1 0.00
92 75 0.36
ACGTcount: A:0.37, C:0.16, G:0.25, T:0.23
Consensus pattern (84 bp):
CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGTGTGTAAGACCATGGT
TGAAAGATACCATGGCAAC
Found at i:111333042 original size:23 final size:25
Alignment explanation
Indices: 111332997--111333043 Score: 62
Period size: 25 Copynumber: 2.0 Consensus size: 25
111332987 AATAAATATA
*
111332997 CATAAAATATATGGAAATGATGAAG
1 CATAAAATATATGGAAATAATGAAG
*
111333022 CATAAAATAT-T-GATATAATGAA
1 CATAAAATATATGGAAATAATGAA
111333044 ATGAATGATA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
23 9 0.45
24 1 0.05
25 10 0.50
ACGTcount: A:0.53, C:0.04, G:0.15, T:0.28
Consensus pattern (25 bp):
CATAAAATATATGGAAATAATGAAG
Found at i:111337427 original size:35 final size:35
Alignment explanation
Indices: 111337379--111337610 Score: 304
Period size: 35 Copynumber: 6.6 Consensus size: 35
111337369 CACGACAAAG
* *
111337379 TGTGAAATGTAGGTATGGCATTAACCATACTGAGT
1 TGTGAAACGTAGGTATGGTATTAACCATACTGAGT
*
111337414 TGTGAAACATAGGTATGGTATTAACCATA-TGGAGT
1 TGTGAAACGTAGGTATGGTATTAACCATACT-GAGT
* * *
111337449 TGTGAAACGTAGGTATGGTATCATCCATACCGAGT
1 TGTGAAACGTAGGTATGGTATTAACCATACTGAGT
111337484 TGTGAAACGTAGGTATGGTATTAACCATACTGAGT
1 TGTGAAACGTAGGTATGGTATTAACCATACTGAGT
* *
111337519 TGTGAAACATAGGTATGGTATTATCCATACTGAGT
1 TGTGAAACGTAGGTATGGTATTAACCATACTGAGT
** * ** *
111337554 TAAGAAACGTAGGTATGGCATTTCCCATACCGAGT
1 TGTGAAACGTAGGTATGGTATTAACCATACTGAGT
* *
111337589 TGTGAAATGTAGGTATGATATT
1 TGTGAAACGTAGGTATGGTATT
111337611 TCAATGAGGA
Statistics
Matches: 171, Mismatches: 24, Indels: 4
0.86 0.12 0.02
Matches are distributed among these distances:
34 1 0.01
35 170 0.99
ACGTcount: A:0.31, C:0.12, G:0.25, T:0.31
Consensus pattern (35 bp):
TGTGAAACGTAGGTATGGTATTAACCATACTGAGT
Found at i:111337561 original size:105 final size:105
Alignment explanation
Indices: 111337379--111337610 Score: 360
Period size: 105 Copynumber: 2.2 Consensus size: 105
111337369 CACGACAAAG
*
111337379 TGTGAAATGTAGGTATGGCATTAACCATACTGAGTTGTGAAACATAGGTATGGTATTAACCATAT
1 TGTGAAATGTAGGTATGGTATTAACCATACTGAGTTGTGAAACATAGGTATGGTATTAACCATAT
** *
111337444 GGAGTTGTGAAACGTAGGTATGGTATCAT-CCATACCGAGT
66 GGAGTTAAGAAACGTAGGTATGGCAT-ATCCCATACCGAGT
* *
111337484 TGTGAAACGTAGGTATGGTATTAACCATACTGAGTTGTGAAACATAGGTATGGTATTATCCATAC
1 TGTGAAATGTAGGTATGGTATTAACCATACTGAGTTGTGAAACATAGGTATGGTATTAACCATA-
*
111337549 T-GAGTTAAGAAACGTAGGTATGGCATTTCCCATACCGAGT
65 TGGAGTTAAGAAACGTAGGTATGGCATATCCCATACCGAGT
*
111337589 TGTGAAATGTAGGTATGATATT
1 TGTGAAATGTAGGTATGGTATT
111337611 TCAATGAGGA
Statistics
Matches: 116, Mismatches: 9, Indels: 4
0.90 0.07 0.03
Matches are distributed among these distances:
104 1 0.01
105 114 0.98
106 1 0.01
ACGTcount: A:0.31, C:0.12, G:0.25, T:0.31
Consensus pattern (105 bp):
TGTGAAATGTAGGTATGGTATTAACCATACTGAGTTGTGAAACATAGGTATGGTATTAACCATAT
GGAGTTAAGAAACGTAGGTATGGCATATCCCATACCGAGT
Found at i:111337749 original size:31 final size:31
Alignment explanation
Indices: 111337706--111337777 Score: 117
Period size: 31 Copynumber: 2.3 Consensus size: 31
111337696 ATAAGTAATT
*
111337706 TGATTAGTGAGAAGTGGTAGCTCCAGCTACC
1 TGATCAGTGAGAAGTGGTAGCTCCAGCTACC
* *
111337737 TGATCAGTGAGAAGTGGTAGCTCCGGCTACT
1 TGATCAGTGAGAAGTGGTAGCTCCAGCTACC
111337768 TGATCAGTGA
1 TGATCAGTGA
111337778 ATAGTGATAA
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
31 38 1.00
ACGTcount: A:0.25, C:0.18, G:0.31, T:0.26
Consensus pattern (31 bp):
TGATCAGTGAGAAGTGGTAGCTCCAGCTACC
Found at i:111337795 original size:31 final size:31
Alignment explanation
Indices: 111337706--111337797 Score: 96
Period size: 31 Copynumber: 3.0 Consensus size: 31
111337696 ATAAGTAATT
* * * *
111337706 TGATTAGTGAGAAGTGGTAGCTCCAGCTACC
1 TGATCAGTGAGAAGTGATAACTCCGGCTACC
* * *
111337737 TGATCAGTGAGAAGTGGTAGCTCCGGCTACT
1 TGATCAGTGAGAAGTGATAACTCCGGCTACC
*
111337768 TGATCAGTGA-ATAGTGATAACTTCGGCTAC
1 TGATCAGTGAGA-AGTGATAACTCCGGCTAC
111337798 AAGTGACAAG
Statistics
Matches: 54, Mismatches: 6, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
30 1 0.02
31 53 0.98
ACGTcount: A:0.26, C:0.18, G:0.28, T:0.27
Consensus pattern (31 bp):
TGATCAGTGAGAAGTGATAACTCCGGCTACC
Found at i:111339048 original size:21 final size:21
Alignment explanation
Indices: 111339019--111339089 Score: 60
Period size: 20 Copynumber: 3.5 Consensus size: 21
111339009 TTAAGGACAT
*
111339019 CATAGATGCAGAACAGGGGCA
1 CATACATGCAGAACAGGGGCA
*
111339040 CATACATGCAG-CCAGGGGCA
1 CATACATGCAGAACAGGGGCA
*
111339060 CCA-A-AGTG-TGAACAGGGGCA
1 -CATACA-TGCAGAACAGGGGCA
*
111339080 CATACGTGCA
1 CATACATGCA
111339090 AAGGGACACC
Statistics
Matches: 38, Mismatches: 6, Indels: 12
0.68 0.11 0.21
Matches are distributed among these distances:
19 4 0.11
20 22 0.58
21 12 0.32
ACGTcount: A:0.34, C:0.24, G:0.31, T:0.11
Consensus pattern (21 bp):
CATACATGCAGAACAGGGGCA
Found at i:111339075 original size:20 final size:20
Alignment explanation
Indices: 111339052--111339131 Score: 78
Period size: 20 Copynumber: 4.1 Consensus size: 20
111339042 TACATGCAGC
111339052 CAGGGGCACCAAAGTGTGAA
1 CAGGGGCACCAAAGTGTGAA
* *
111339072 CAGGGGCA-CATACGTG-CAA
1 CAGGGGCACCA-AAGTGTGAA
*
111339091 -AGGGACACCAAAGTGT-ATA
1 CAGGGGCACCAAAGTGTGA-A
*
111339110 CAGGGGCACCAAAGTGAGAA
1 CAGGGGCACCAAAGTGTGAA
111339130 CA
1 CA
111339132 AGAGCACAGA
Statistics
Matches: 48, Mismatches: 6, Indels: 12
0.73 0.09 0.18
Matches are distributed among these distances:
18 11 0.23
19 7 0.15
20 29 0.60
21 1 0.02
ACGTcount: A:0.38, C:0.21, G:0.31, T:0.10
Consensus pattern (20 bp):
CAGGGGCACCAAAGTGTGAA
Found at i:111339113 original size:38 final size:39
Alignment explanation
Indices: 111339029--111339118 Score: 121
Period size: 38 Copynumber: 2.3 Consensus size: 39
111339019 CATAGATGCA
* *
111339029 GAACAGGGGCACATACATGCAGCCAGGGGCACCAAAGTGT
1 GAACAGGGGCACATACATGCA-CAAGGGACACCAAAGTGT
*
111339069 GAACAGGGGCACATACGTGCA-AAGGGACACCAAAGTGT
1 GAACAGGGGCACATACATGCACAAGGGACACCAAAGTGT
111339107 -ATACAGGGGCAC
1 GA-ACAGGGGCAC
111339119 CAAAGTGAGA
Statistics
Matches: 46, Mismatches: 3, Indels: 4
0.87 0.06 0.08
Matches are distributed among these distances:
37 1 0.02
38 25 0.54
40 20 0.43
ACGTcount: A:0.34, C:0.23, G:0.32, T:0.10
Consensus pattern (39 bp):
GAACAGGGGCACATACATGCACAAGGGACACCAAAGTGT
Found at i:111339197 original size:20 final size:20
Alignment explanation
Indices: 111339172--111339211 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
111339162 AGTGTATACA
* *
111339172 GGGCACCGAAGTGCGAATAG
1 GGGCACAGAAGTGCAAATAG
*
111339192 GGGCACAGATGTGCAAATAG
1 GGGCACAGAAGTGCAAATAG
111339212 AGATACCAAA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.33, C:0.17, G:0.38, T:0.12
Consensus pattern (20 bp):
GGGCACAGAAGTGCAAATAG
Found at i:111339200 original size:59 final size:59
Alignment explanation
Indices: 111339055--111339253 Score: 213
Period size: 59 Copynumber: 3.4 Consensus size: 59
111339045 ATGCAGCCAG
* * *
111339055 GGGCACCAAAGTGTGAACAGGGGCACATACGTGC-AA-AGGGACACCAAAGTGTATACA
1 GGGCACCAAAGTGCGAACAGGGGCACAGACGTGCAAATAGAGACACCAAAGTGTATACA
* * * * **
111339112 GGGGCACCAAAGTGAGAACAAGAGCACAGACGTGCAAATAAAGACACTGAAGTGTATACA
1 -GGGCACCAAAGTGCGAACAGGGGCACAGACGTGCAAATAGAGACACCAAAGTGTATACA
* * * * * *
111339172 GGGCACCGAAGTGCGAATAGGGGCACAGATGTGCAAATAGAGATACCAAAATGTATTCAA
1 GGGCACCAAAGTGCGAACAGGGGCACAGACGTGCAAATAGAGACACCAAAGTGTATAC-A
* *
111339232 GGGCACCGATGTGCGAACAGGG
1 GGGCACCAAAGTGCGAACAGGG
111339254 ACATTATTGC
Statistics
Matches: 116, Mismatches: 22, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
58 30 0.26
59 48 0.41
60 38 0.33
ACGTcount: A:0.38, C:0.19, G:0.30, T:0.13
Consensus pattern (59 bp):
GGGCACCAAAGTGCGAACAGGGGCACAGACGTGCAAATAGAGACACCAAAGTGTATACA
Found at i:111356645 original size:390 final size:397
Alignment explanation
Indices: 111356042--111356824 Score: 1104
Period size: 391 Copynumber: 2.0 Consensus size: 397
111356032 AAACAAAGTT
* *
111356042 TAAACCAAGCTACCTGTAAGTGTCAAATACAAGTCTAAGTCCTACATAGGTATGTTCAATATTCT
1 TAAACCAAGCTACCTGTAAGTGTCAAATACAAGTCTAACTCCGACATAGGTATGTTCAATATTCT
* * *
111356107 CTTTTCTAATTTTTAAAATATATTTGGGGAACCATATCCTCGTATCCATTTCTCAATGTGTTGGA
66 ATTTTCTAAATTTTAAAATATATTTGGGGAACCATATCCTCGTATCCATGTCTCAATGTGTTGGA
** * * * * * *
111356172 TATGGGTGTTGGGCCCAACACACTTCAAAGAAACTGAAAAGTCTGAGCAACATTGCGAACTACAA
131 TATGGGTGCAGGACACAACACACTTCAAAGAAAATGAAAACTCTGAGCAACATAGCAAACTACAA
* * *
111356237 CGCCAGTTATGACATCACATAAACGAAGTTG-AATCTAAAACGGCACCATTGACTTCTCATGGAA
196 CACCAGTTATGACATCACATAAACGAAGTTGAAATCTAAAACAGCACCATTGACTT-TCATGAAA
*** * * * *
111356301 CAT-GGGAGAAAAA-GAATAGTGAAAGAGAAAGTACATAA-TTAATCAAATAATTAGCAATCGTT
260 CATAAAAAAAAAAAGGAATAGT--AAGAGAAAGGACATAATTTAATAAAATAATTAGCAATCATT
* * *
111356363 TTACTTGTCAGTTTCTTCTTTTCTTTGTACTGTGAAAAGCCCATGCAGACAAAGTAGAAAGCTTA
323 TTACATATCAGTTTCTTCTTTTCTTTGTACTGTAAAAAGCCCATGCAGACAAAGTAGAAAGCTTA
111356428 TATCCACATC
388 TATCCACATC
* *
111356438 TAAACCAGGCTACCTGTGAGTGTCAAATACAAGTCTAACTCCGACATAGGTATGTTC-A-A-T-T
1 TAAACCAAGCTACCTGTAAGTGTCAAATACAAGTCTAACTCCGACATAGGTATGTTCAATATTCT
* * *
111356499 ATTTTCTAAAATTTT-AAATATATTTGGGGAACCATATGCTTGTATCCATGTCTGAATGTGTTGG
66 ATTTTCT-AAATTTTAAAATATATTTGGGGAACCATATCCTCGTATCCATGTCTCAATGTGTTGG
111356563 ATATGGGTGCAGGACAC-A-ACACTTCAAAGAAAATGAAAACT-TGGAGCAACATAGCAAACTAC
130 ATATGGGTGCAGGACACAACACACTTCAAAGAAAATGAAAACTCT-GAGCAACATAGCAAACTAC
* *
111356625 AACACCAGTTATGACATCACATAAATGAAGTTGAAATCTAAGACAGCACCATTGACTTTCATGAA
194 AACACCAGTTATGACATCACATAAACGAAGTTGAAATCTAAAACAGCACCATTGACTTTCATGAA
* * *
111356690 ACATAAAAAAAAAAAGGAATAGTAAGAGAAAGGATATAATTTTATAAAATAATTAGCTATCATTT
259 ACATAAAAAAAAAAAGGAATAGTAAGAGAAAGGACATAATTTAATAAAATAATTAGCAATCATTT
*
111356755 TACATATTAGTTTCTTCTTTTCTTTGTACTGTAAAAAGCCCATGCAGACAAAGTAGAAAGCTTAT
324 TACATATCAGTTTCTTCTTTTCTTTGTACTGTAAAAAGCCCATGCAGACAAAGTAGAAAGCTTAT
111356820 ATCCA
389 ATCCA
111356825 AGTTATCATC
Statistics
Matches: 344, Mismatches: 37, Indels: 17
0.86 0.09 0.04
Matches are distributed among these distances:
389 1 0.00
390 93 0.27
391 116 0.34
392 72 0.21
393 7 0.02
394 1 0.00
395 1 0.00
396 53 0.15
ACGTcount: A:0.37, C:0.17, G:0.16, T:0.29
Consensus pattern (397 bp):
TAAACCAAGCTACCTGTAAGTGTCAAATACAAGTCTAACTCCGACATAGGTATGTTCAATATTCT
ATTTTCTAAATTTTAAAATATATTTGGGGAACCATATCCTCGTATCCATGTCTCAATGTGTTGGA
TATGGGTGCAGGACACAACACACTTCAAAGAAAATGAAAACTCTGAGCAACATAGCAAACTACAA
CACCAGTTATGACATCACATAAACGAAGTTGAAATCTAAAACAGCACCATTGACTTTCATGAAAC
ATAAAAAAAAAAAGGAATAGTAAGAGAAAGGACATAATTTAATAAAATAATTAGCAATCATTTTA
CATATCAGTTTCTTCTTTTCTTTGTACTGTAAAAAGCCCATGCAGACAAAGTAGAAAGCTTATAT
CCACATC
Found at i:111360256 original size:33 final size:33
Alignment explanation
Indices: 111360161--111360263 Score: 97
Period size: 31 Copynumber: 3.2 Consensus size: 33
111360151 TGTTAGCTAT
* *
111360161 TTTTTACATGTCATTTACACCTTATTTAATTAGA
1 TTTTTACAT-TCATTTACACGTCATTTAATTAGA
* * * *
111360195 TTTTTA-A-TCATTTA-ATGACAAGTCAATTA-A
1 TTTTTACATTCATTTACACGTC-ATTTAATTAGA
111360225 TTTTTACATCTCATTTACACGTCATTTAATTAGA
1 TTTTTACAT-TCATTTACACGTCATTTAATTAGA
111360259 TTTTT
1 TTTTT
111360264 TAATCATAAA
Statistics
Matches: 53, Mismatches: 10, Indels: 12
0.71 0.13 0.16
Matches are distributed among these distances:
30 8 0.15
31 15 0.28
33 15 0.28
34 15 0.28
ACGTcount: A:0.31, C:0.14, G:0.06, T:0.50
Consensus pattern (33 bp):
TTTTTACATTCATTTACACGTCATTTAATTAGA
Found at i:111364792 original size:28 final size:28
Alignment explanation
Indices: 111364757--111364825 Score: 106
Period size: 27 Copynumber: 2.5 Consensus size: 28
111364747 AAAGAAAGCC
*
111364757 AAAT-TATACATAAATAAATTTTAAAGA
1 AAATATATACATAAATAAATTTAAAAGA
111364784 AAATATATACAT-AATAAATTTAAAAGA
1 AAATATATACATAAATAAATTTAAAAGA
*
111364811 AAATATTTACATAAA
1 AAATATATACATAAA
111364826 ATATTATGAA
Statistics
Matches: 38, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
27 29 0.76
28 9 0.24
ACGTcount: A:0.61, C:0.04, G:0.03, T:0.32
Consensus pattern (28 bp):
AAATATATACATAAATAAATTTAAAAGA
Found at i:111365216 original size:12 final size:11
Alignment explanation
Indices: 111365196--111365225 Score: 51
Period size: 12 Copynumber: 2.6 Consensus size: 11
111365186 AGAAATTTTA
111365196 TTTTTTTTGTT
1 TTTTTTTTGTT
111365207 TTTGTTTTTGTT
1 TTT-TTTTTGTT
111365219 TTTTTTT
1 TTTTTTT
111365226 CTTTTTTAGA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
11 7 0.39
12 11 0.61
ACGTcount: A:0.00, C:0.00, G:0.10, T:0.90
Consensus pattern (11 bp):
TTTTTTTTGTT
Found at i:111365674 original size:9 final size:9
Alignment explanation
Indices: 111365660--111365685 Score: 52
Period size: 9 Copynumber: 2.9 Consensus size: 9
111365650 GACACACACA
111365660 AATAATAGT
1 AATAATAGT
111365669 AATAATAGT
1 AATAATAGT
111365678 AATAATAG
1 AATAATAG
111365686 AAAGATATAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 17 1.00
ACGTcount: A:0.58, C:0.00, G:0.12, T:0.31
Consensus pattern (9 bp):
AATAATAGT
Found at i:111366391 original size:23 final size:24
Alignment explanation
Indices: 111366343--111366403 Score: 83
Period size: 23 Copynumber: 2.6 Consensus size: 24
111366333 ATAACAAGGA
111366343 TAATAT-AAAAATATATACATGAAG
1 TAATATAAAAAATATATACAT-AAG
111366367 TAATATAAAAAATATATA-ACT-AG
1 TAATATAAAAAATATATACA-TAAG
111366390 TAATATAAAAAATA
1 TAATATAAAAAATA
111366404 AGAAATATAT
Statistics
Matches: 35, Mismatches: 0, Indels: 5
0.88 0.00 0.12
Matches are distributed among these distances:
23 16 0.46
24 7 0.20
25 12 0.34
ACGTcount: A:0.62, C:0.03, G:0.05, T:0.30
Consensus pattern (24 bp):
TAATATAAAAAATATATACATAAG
Found at i:111366593 original size:17 final size:17
Alignment explanation
Indices: 111366573--111366621 Score: 59
Period size: 17 Copynumber: 3.0 Consensus size: 17
111366563 TAATACTTCA
111366573 TAAATATATATACATAC
1 TAAATATATATACATAC
*
111366590 TAAA-A-ATATACATAA
1 TAAATATATATACATAC
111366605 T-AATAATATATACATAC
1 TAAAT-ATATATACATAC
111366622 AAAGTACACT
Statistics
Matches: 27, Mismatches: 2, Indels: 6
0.77 0.06 0.17
Matches are distributed among these distances:
14 2 0.07
15 10 0.37
16 2 0.07
17 13 0.48
ACGTcount: A:0.57, C:0.10, G:0.00, T:0.33
Consensus pattern (17 bp):
TAAATATATATACATAC
Found at i:111366600 original size:15 final size:17
Alignment explanation
Indices: 111366578--111366621 Score: 65
Period size: 15 Copynumber: 2.7 Consensus size: 17
111366568 CTTCATAAAT
111366578 ATATATACATACTAA-A
1 ATATATACATACTAATA
*
111366594 A-ATATACATAATAATA
1 ATATATACATACTAATA
111366610 ATATATACATAC
1 ATATATACATAC
111366622 AAAGTACACT
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
15 12 0.50
16 3 0.12
17 9 0.38
ACGTcount: A:0.57, C:0.11, G:0.00, T:0.32
Consensus pattern (17 bp):
ATATATACATACTAATA
Found at i:111366682 original size:16 final size:18
Alignment explanation
Indices: 111366642--111366688 Score: 62
Period size: 18 Copynumber: 2.7 Consensus size: 18
111366632 AATATTTAAA
* *
111366642 AATAATAATAGTAAATAT
1 AATATTAATATTAAATAT
111366660 AATATTAATATTAAATA-
1 AATATTAATATTAAATAT
111366677 AA-ATTAATATTA
1 AATATTAATATTA
111366689 CAGATTTAAT
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
16 10 0.37
17 2 0.07
18 15 0.56
ACGTcount: A:0.60, C:0.00, G:0.02, T:0.38
Consensus pattern (18 bp):
AATATTAATATTAAATAT
Found at i:111367947 original size:35 final size:34
Alignment explanation
Indices: 111367910--111368012 Score: 101
Period size: 34 Copynumber: 3.1 Consensus size: 34
111367900 TTTATGATTA
111367910 AAAAATCTAATTAAATGATGTATAAATGAGATGT
1 AAAAATCTAATTAAATGATGTATAAATGAGATGT
* *
111367944 AAAAAT-TAATTGACATG-T-CATTAAAT--GAT-T
1 AAAAATCTAATT-AAATGATGTA-TAAATGAGATGT
* * *
111367974 AAAAATCTAATTAAATGAGGTGTAAATGACATGT
1 AAAAATCTAATTAAATGATGTATAAATGAGATGT
111368008 AAAAA
1 AAAAA
111368013 ATAGCTGACA
Statistics
Matches: 54, Mismatches: 7, Indels: 16
0.70 0.09 0.21
Matches are distributed among these distances:
30 11 0.20
31 13 0.24
32 1 0.02
33 13 0.24
34 16 0.30
ACGTcount: A:0.50, C:0.05, G:0.14, T:0.31
Consensus pattern (34 bp):
AAAAATCTAATTAAATGATGTATAAATGAGATGT
Found at i:111367984 original size:64 final size:65
Alignment explanation
Indices: 111367903--111368037 Score: 200
Period size: 64 Copynumber: 2.1 Consensus size: 65
111367893 TTAGGGATTT
* * * *
111367903 ATGATTAAAAAATCTAATTAAATGATGTATAAATGAGATGTAAAAATTAATTGACATGTCATTAA
1 ATGATTAAAAAATCTAATTAAATGAGGTATAAATGACATGTAAAAAATAACTGACATGTCATTAA
* *
111367968 ATGATT-AAAAATCTAATTAAATGAGGTGTAAATGACATGTAAAAAATAGCTGACATGTCATTAA
1 ATGATTAAAAAATCTAATTAAATGAGGTATAAATGACATGTAAAAAATAACTGACATGTCATTAA
*
111368032 TTGATT
1 ATGATT
111368038 GGGAAGGGAC
Statistics
Matches: 63, Mismatches: 7, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
64 57 0.90
65 6 0.10
ACGTcount: A:0.47, C:0.06, G:0.14, T:0.33
Consensus pattern (65 bp):
ATGATTAAAAAATCTAATTAAATGAGGTATAAATGACATGTAAAAAATAACTGACATGTCATTAA
Found at i:111368000 original size:31 final size:30
Alignment explanation
Indices: 111367903--111368002 Score: 85
Period size: 31 Copynumber: 3.1 Consensus size: 30
111367893 TTAGGGATTT
*
111367903 ATGATTAAAAAATCTAATTAAATGATGTATAA
1 ATGATT-AAAAATCTAATTAAATGACGT-TAA
* * *
111367935 ATGAGATGTAAAAAT-TAATTGACATGTCATTAA
1 AT--GAT-TAAAAATCTAATT-AAATGACGTTAA
*
111367968 ATGATTAAAAATCTAATTAAATGAGGTGTAA
1 ATGATTAAAAATCTAATTAAATGACGT-TAA
111367999 ATGA
1 ATGA
111368003 CATGTAAAAA
Statistics
Matches: 54, Mismatches: 8, Indels: 13
0.72 0.11 0.17
Matches are distributed among these distances:
30 12 0.22
31 15 0.28
32 2 0.04
33 10 0.19
34 14 0.26
35 1 0.02
ACGTcount: A:0.49, C:0.04, G:0.14, T:0.33
Consensus pattern (30 bp):
ATGATTAAAAATCTAATTAAATGACGTTAA
Found at i:111379648 original size:17 final size:19
Alignment explanation
Indices: 111379628--111379668 Score: 52
Period size: 18 Copynumber: 2.3 Consensus size: 19
111379618 ATAATTTTAA
111379628 AAAATATA-T-AAAACATC
1 AAAATATATTAAAAACATC
*
111379645 AAAA-ATATTAAAAATATC
1 AAAATATATTAAAAACATC
111379663 AAAATA
1 AAAATA
111379669 AATATTTCCC
Statistics
Matches: 20, Mismatches: 1, Indels: 4
0.80 0.04 0.16
Matches are distributed among these distances:
16 3 0.15
17 5 0.25
18 11 0.55
19 1 0.05
ACGTcount: A:0.68, C:0.07, G:0.00, T:0.24
Consensus pattern (19 bp):
AAAATATATTAAAAACATC
Found at i:111379793 original size:30 final size:30
Alignment explanation
Indices: 111379750--111379807 Score: 98
Period size: 30 Copynumber: 1.9 Consensus size: 30
111379740 CTTAATAAGC
111379750 AAATGCCTCTAAAATAATAACAAAATTAAT
1 AAATGCCTCTAAAATAATAACAAAATTAAT
* *
111379780 AAATGTCTTTAAAATAATAACAAAATTA
1 AAATGCCTCTAAAATAATAACAAAATTA
111379808 GCAATAAAAT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.57, C:0.10, G:0.03, T:0.29
Consensus pattern (30 bp):
AAATGCCTCTAAAATAATAACAAAATTAAT
Found at i:111388067 original size:40 final size:40
Alignment explanation
Indices: 111388023--111388103 Score: 153
Period size: 40 Copynumber: 2.0 Consensus size: 40
111388013 ATTCAGTGTC
111388023 TGCAAGTTATGAAGGGAGCTTGCTGATTCAGGTAGAGTTT
1 TGCAAGTTATGAAGGGAGCTTGCTGATTCAGGTAGAGTTT
*
111388063 TGCAAGTTATGAAGGGAGCTTGTTGATTCAGGTAGAGTTT
1 TGCAAGTTATGAAGGGAGCTTGCTGATTCAGGTAGAGTTT
111388103 T
1 T
111388104 CATATTACCA
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
40 40 1.00
ACGTcount: A:0.25, C:0.09, G:0.32, T:0.35
Consensus pattern (40 bp):
TGCAAGTTATGAAGGGAGCTTGCTGATTCAGGTAGAGTTT
Found at i:111390472 original size:107 final size:106
Alignment explanation
Indices: 111390326--111390551 Score: 301
Period size: 107 Copynumber: 2.1 Consensus size: 106
111390316 TTCCTTTTGG
* * *
111390326 CATATTCTCAACATAAAATTCTCATTTATAATTACATTTACTTTTCCTATAATATATTTGTGGAA
1 CATATTCTTAA-ATAAAATGCTCATTTATAATTACATTTACTTTTCCAATAATATATTTGTGGAA
** * *
111390391 AGTAATGGCATTTGGTCATTGAAATTAGTGGTAAATAGTGTT
65 AGTAACCGCATTTGGTCATTCAAATTAGTGGTAAATAATGTT
* * *
111390433 CATATTCTTAAAGTAAAATGCTCATTTATATTTGCATTTACTTTTCCAATTATATATTTGTGGAA
1 CATATTCTTAAA-TAAAATGCTCATTTATAATTACATTTACTTTTCCAATAATATATTTGTGGAA
* * *
111390498 GGTAGCCGCATTTGGTCATTCAACTTAGTGGTAAATAATGTT
65 AGTAACCGCATTTGGTCATTCAAATTAGTGGTAAATAATGTT
111390540 CATAGTT-TTAAA
1 CATA-TTCTTAAA
111390552 AATATATATT
Statistics
Matches: 104, Mismatches: 13, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
106 1 0.01
107 101 0.97
108 2 0.02
ACGTcount: A:0.32, C:0.12, G:0.14, T:0.42
Consensus pattern (106 bp):
CATATTCTTAAATAAAATGCTCATTTATAATTACATTTACTTTTCCAATAATATATTTGTGGAAA
GTAACCGCATTTGGTCATTCAAATTAGTGGTAAATAATGTT
Found at i:111397745 original size:42 final size:41
Alignment explanation
Indices: 111397698--111397779 Score: 146
Period size: 42 Copynumber: 2.0 Consensus size: 41
111397688 ATTCAGTGTC
111397698 TGCAAGTTATGAAGGGAGCTTGCTGATTCAGGTTAGAGTTTG
1 TGCAAGTTATGAAGGGAGCTTGCTGATTCAGG-TAGAGTTTG
*
111397740 TGCAAGTTATGAAGGGAGCTTGTTGATTCAGGTAGAGTTT
1 TGCAAGTTATGAAGGGAGCTTGCTGATTCAGGTAGAGTTT
111397780 TCATATTACC
Statistics
Matches: 39, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
41 8 0.21
42 31 0.79
ACGTcount: A:0.24, C:0.09, G:0.33, T:0.34
Consensus pattern (41 bp):
TGCAAGTTATGAAGGGAGCTTGCTGATTCAGGTAGAGTTTG
Found at i:111420038 original size:17 final size:17
Alignment explanation
Indices: 111420018--111420444 Score: 145
Period size: 17 Copynumber: 24.8 Consensus size: 17
111420008 ACGAAAGTTT
111420018 TTTTTAAAACACGAGAA
1 TTTTTAAAACACGAGAA
111420035 TTTTTGAAAACACGAGAA
1 TTTTT-AAAACACGAGAA
*
111420053 TTTGT-AAACACGA-AA
1 TTTTTAAAACACGAGAA
* *
111420068 ATTTTAGAAACACGAAAA
1 TTTTTA-AAACACGAGAA
*
111420086 TTTTTAGAAAAAACGA-AA
1 TTTTT--AAAACACGAGAA
* *
111420104 TTTCTTAAAACACGACATTTT
1 TTT-TTAAAACACGAGA---A
* *
111420125 TTTTTGAAACACGGGAA
1 TTTTTAAAACACGAGAA
*
111420142 TTTTTAAAACA-GGGAA
1 TTTTTAAAACACGAGAA
*
111420158 ATTTTAGAAACACGA-AA
1 TTTTTA-AAACACGAGAA
* * *
111420175 ATTTTAAAACACGACAT
1 TTTTTAAAACACGAGAA
*
111420192 TTTTTGAAACAC--G-A
1 TTTTTAAAACACGAGAA
111420206 --TTTAAAA-AC-A-AA
1 TTTTTAAAACACGAGAA
** * **
111420218 -AATTGAAATGCGAGAA
1 TTTTTAAAACACGAGAA
* *
111420234 TATTTTGAAACACGA-ATTTT
1 T-TTTTAAAACACGAGA---A
* *
111420254 TTTTTTAAACGCGAGAA
1 TTTTTAAAACACGAGAA
*
111420271 TTTTTGAAAACATG-GAA
1 TTTTT-AAAACACGAGAA
** * *
111420288 ACTTTGAAACACTG-GAG
1 TTTTTAAAACAC-GAGAA
111420305 TTTTTGAAAACACGAGAA
1 TTTTT-AAAACACGAGAA
* * *
111420323 TTTGTGAAACACGAAAA
1 TTTTTAAAACACGAGAA
*
111420340 TTTGTGAAAACACGTA-AA
1 TTT-TTAAAACACG-AGAA
* *
111420358 TTTTTTTTAAACACGAAAA
1 --TTTTTAAAACACGAGAA
* * *
111420377 TTTTTGAAACGCCAGAA
1 TTTTTAAAACACGAGAA
* *
111420394 TTTCTGAAAACAC-AAAGA
1 TTT-TTAAAACACGAGA-A
*
111420412 TTTTTGAAAACACGAAAA
1 TTTTT-AAAACACGAGAA
111420430 TTTTTGAAAACACGA
1 TTTTT-AAAACACGA
111420445 AAACACAAAA
Statistics
Matches: 311, Mismatches: 60, Indels: 77
0.69 0.13 0.17
Matches are distributed among these distances:
11 2 0.01
12 7 0.02
13 5 0.02
14 1 0.00
15 6 0.02
16 33 0.11
17 106 0.34
18 98 0.32
19 34 0.11
20 16 0.05
21 3 0.01
ACGTcount: A:0.44, C:0.12, G:0.14, T:0.30
Consensus pattern (17 bp):
TTTTTAAAACACGAGAA
Found at i:111420447 original size:18 final size:18
Alignment explanation
Indices: 111420017--111420447 Score: 209
Period size: 18 Copynumber: 25.0 Consensus size: 18
111420007 AACGAAAGTT
* *
111420017 TTTTTTAAAACACGAGAA
1 TTTTTGAAAACACGAAAA
*
111420035 TTTTTGAAAACACGAGAA
1 TTTTTGAAAACACGAAAA
*
111420053 --TTTGTAAACACGAAAA
1 TTTTTGAAAACACGAAAA
*
111420069 TTTTAG-AAACACGAAAA
1 TTTTTGAAAACACGAAAA
*
111420086 TTTTTAGAAAAAACG-AAA
1 TTTTT-GAAAACACGAAAA
**
111420104 TTTCTT-AAAACACGACATTTT
1 TTT-TTGAAAACACGA-A--AA
**
111420125 TTTTTG-AAACACGGGAA
1 TTTTTGAAAACACGAAAA
* *
111420142 TTTTT-AAAACAGGGAAA
1 TTTTTGAAAACACGAAAA
*
111420159 TTTTAG-AAACACGAAAA
1 TTTTTGAAAACACGAAAA
* *
111420176 -TTTT-AAAACACGACAT
1 TTTTTGAAAACACGAAAA
111420192 TTTTTG-AAACACG---A
1 TTTTTGAAAACACGAAAA
111420206 --TTT-AAAA-AC-AAAA
1 TTTTTGAAAACACGAAAA
* ** *
111420219 --ATTG-AAATGCGAGAA
1 TTTTTGAAAACACGAAAA
**
111420234 TATTTTG-AAACACGAATTT
1 T-TTTTGAAAACACGAA-AA
** * *
111420253 TTTTTTTAAACGCGAGAA
1 TTTTTGAAAACACGAAAA
* *
111420271 TTTTTGAAAACATGGAAA
1 TTTTTGAAAACACGAAAA
* * *
111420289 -CTTTG-AAACACTG-GAG
1 TTTTTGAAAACAC-GAAAA
*
111420305 TTTTTGAAAACACGAGAA
1 TTTTTGAAAACACGAAAA
*
111420323 TTTGTG-AAACACGAAAA
1 TTTTTGAAAACACGAAAA
* *
111420340 TTTGTGAAAACACGTAAAT
1 TTTTTGAAAACACG-AAAA
**
111420359 TTTTTTTAAACACGAAAA
1 TTTTTGAAAACACGAAAA
* * *
111420377 TTTTTG-AAACGCCAGAA
1 TTTTTGAAAACACGAAAA
*
111420394 TTTCTGAAAACAC-AAAGA
1 TTTTTGAAAACACGAAA-A
111420412 TTTTTGAAAACACGAAAA
1 TTTTTGAAAACACGAAAA
111420430 TTTTTGAAAACACGAAAA
1 TTTTTGAAAACACGAAAA
111420448 CACAAAATTT
Statistics
Matches: 314, Mismatches: 63, Indels: 72
0.70 0.14 0.16
Matches are distributed among these distances:
11 2 0.01
12 6 0.02
13 6 0.02
14 1 0.00
15 3 0.01
16 32 0.10
17 101 0.32
18 117 0.37
19 34 0.11
20 9 0.03
21 3 0.01
ACGTcount: A:0.45, C:0.12, G:0.14, T:0.30
Consensus pattern (18 bp):
TTTTTGAAAACACGAAAA
Found at i:111420525 original size:9 final size:9
Alignment explanation
Indices: 111420511--111420544 Score: 54
Period size: 9 Copynumber: 4.0 Consensus size: 9
111420501 ATTCACGAGA
111420511 ATTTTTTTT
1 ATTTTTTTT
111420520 ATTTTTTTT
1 ATTTTTTTT
111420529 A--TTTTTT
1 ATTTTTTTT
111420536 ATTTTTTTT
1 ATTTTTTTT
111420545 TGAAACACGA
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
7 7 0.30
9 16 0.70
ACGTcount: A:0.12, C:0.00, G:0.00, T:0.88
Consensus pattern (9 bp):
ATTTTTTTT
Found at i:111420535 original size:16 final size:16
Alignment explanation
Indices: 111420514--111420544 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
111420504 CACGAGAATT
111420514 TTTTTTATTTTTTTTA
1 TTTTTTATTTTTTTTA
111420530 TTTTTTATTTTTTTT
1 TTTTTTATTTTTTTT
111420545 TGAAACACGA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.10, C:0.00, G:0.00, T:0.90
Consensus pattern (16 bp):
TTTTTTATTTTTTTTA
Found at i:111420559 original size:20 final size:20
Alignment explanation
Indices: 111420538--111420574 Score: 67
Period size: 19 Copynumber: 1.9 Consensus size: 20
111420528 TATTTTTTAT
111420538 TTTTTTTTG-AAACACGAGA
1 TTTTTTTTGAAAACACGAGA
111420557 TTTTTTTTGAAAACACGA
1 TTTTTTTTGAAAACACGA
111420575 AAACACGAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.32, C:0.11, G:0.14, T:0.43
Consensus pattern (20 bp):
TTTTTTTTGAAAACACGAGA
Found at i:111420622 original size:17 final size:16
Alignment explanation
Indices: 111420573--111420620 Score: 64
Period size: 15 Copynumber: 3.0 Consensus size: 16
111420563 TTGAAAACAC
111420573 GAAAACACGAATTTTT
1 GAAAACACGAATTTTT
111420589 G-AAACACGGAAATTTTT
1 GAAAACAC-G-AATTTTT
111420606 GAAAACACG-ATTTTT
1 GAAAACACGAATTTTT
111420621 TTAGAAAGAA
Statistics
Matches: 29, Mismatches: 0, Indels: 7
0.81 0.00 0.19
Matches are distributed among these distances:
15 12 0.41
16 2 0.07
17 9 0.31
18 6 0.21
ACGTcount: A:0.42, C:0.12, G:0.15, T:0.31
Consensus pattern (16 bp):
GAAAACACGAATTTTT
Found at i:111421980 original size:30 final size:30
Alignment explanation
Indices: 111421940--111422041 Score: 125
Period size: 30 Copynumber: 3.4 Consensus size: 30
111421930 ATTTAGGATT
* *
111421940 AAAATGAAATTTAATGAAGGTTTAGGGGTC
1 AAAATGAAATTTAAAGAAAGTTTAGGGGTC
* * *
111421970 TAAGTGAAATTTAAAGAAAGTTTAAGGGTC
1 AAAATGAAATTTAAAGAAAGTTTAGGGGTC
*
111422000 AAAATGAAATTT-AGGAAAAGTTTAGGGGTC
1 AAAATGAAATTTAAAG-AAAGTTTAGGGGTC
*
111422030 AAAATGCAATTT
1 AAAATGAAATTT
111422042 TTATTTTTAA
Statistics
Matches: 61, Mismatches: 10, Indels: 2
0.84 0.14 0.03
Matches are distributed among these distances:
29 2 0.03
30 59 0.97
ACGTcount: A:0.43, C:0.04, G:0.24, T:0.29
Consensus pattern (30 bp):
AAAATGAAATTTAAAGAAAGTTTAGGGGTC
Found at i:111425149 original size:31 final size:32
Alignment explanation
Indices: 111425098--111425160 Score: 83
Period size: 31 Copynumber: 2.0 Consensus size: 32
111425088 TTAATAAAAT
* *
111425098 TTTATAATTTTAAT-TTTTTTTATAAATTTTG
1 TTTATAATTTTAATGATTTTTAATAAATTTTG
*
111425129 TTTATAATTTTTATGATTTTTAAATAAATTTT
1 TTTATAATTTTAATGATTTTT-AATAAATTTT
111425161 TAATTTTAAA
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
31 13 0.48
32 5 0.19
33 9 0.33
ACGTcount: A:0.32, C:0.00, G:0.03, T:0.65
Consensus pattern (32 bp):
TTTATAATTTTAATGATTTTTAATAAATTTTG
Found at i:111425156 original size:33 final size:31
Alignment explanation
Indices: 111425098--111425160 Score: 81
Period size: 33 Copynumber: 2.0 Consensus size: 31
111425088 TTAATAAAAT
**
111425098 TTTATAATTTTAATTTTTTTTATAAATTTTG
1 TTTATAATTTTAATTTTTTAAATAAATTTTG
*
111425129 TTTATAATTTTTATGATTTTTAAATAAATTTT
1 TTTATAATTTTAAT--TTTTTAAATAAATTTT
111425161 TAATTTTAAA
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
31 13 0.48
33 14 0.52
ACGTcount: A:0.32, C:0.00, G:0.03, T:0.65
Consensus pattern (31 bp):
TTTATAATTTTAATTTTTTAAATAAATTTTG
Found at i:111428411 original size:17 final size:17
Alignment explanation
Indices: 111428385--111428418 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
111428375 ATATTTTAGG
*
111428385 TGAAAGAAAATAAAAAT
1 TGAAAAAAAATAAAAAT
*
111428402 TGAAAAAAAATTAAAAT
1 TGAAAAAAAATAAAAAT
111428419 ATTATTTTTT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.71, C:0.00, G:0.09, T:0.21
Consensus pattern (17 bp):
TGAAAAAAAATAAAAAT
Found at i:111431872 original size:13 final size:13
Alignment explanation
Indices: 111431854--111431879 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
111431844 AATTGTTTAT
111431854 GTGTATATATATA
1 GTGTATATATATA
111431867 GTGTATATATATA
1 GTGTATATATATA
111431880 TATAAGTTAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.00, G:0.15, T:0.46
Consensus pattern (13 bp):
GTGTATATATATA
Found at i:111437366 original size:24 final size:25
Alignment explanation
Indices: 111437330--111437376 Score: 69
Period size: 24 Copynumber: 1.9 Consensus size: 25
111437320 AAAAGCAATT
111437330 TAAAAAAATTAAAGGAAAAAAATCA
1 TAAAAAAATTAAAGGAAAAAAATCA
* *
111437355 TAAAAGAA-TAAAGGACAAAAAT
1 TAAAAAAATTAAAGGAAAAAAAT
111437377 ACACAGCTCC
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
24 13 0.65
25 7 0.35
ACGTcount: A:0.70, C:0.04, G:0.11, T:0.15
Consensus pattern (25 bp):
TAAAAAAATTAAAGGAAAAAAATCA
Found at i:111439256 original size:25 final size:25
Alignment explanation
Indices: 111439228--111439278 Score: 93
Period size: 25 Copynumber: 2.0 Consensus size: 25
111439218 AGTATGAAAA
111439228 TACAACCATCATTAGAGTATTTACC
1 TACAACCATCATTAGAGTATTTACC
*
111439253 TACATCCATCATTAGAGTATTTACC
1 TACAACCATCATTAGAGTATTTACC
111439278 T
1 T
111439279 CATACTTGAT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.33, C:0.24, G:0.08, T:0.35
Consensus pattern (25 bp):
TACAACCATCATTAGAGTATTTACC
Found at i:111447473 original size:29 final size:29
Alignment explanation
Indices: 111447431--111447489 Score: 118
Period size: 29 Copynumber: 2.0 Consensus size: 29
111447421 CAAAAGTCTT
111447431 AGAAAATTAATAGTTACATACGAATATAC
1 AGAAAATTAATAGTTACATACGAATATAC
111447460 AGAAAATTAATAGTTACATACGAATATAC
1 AGAAAATTAATAGTTACATACGAATATAC
111447489 A
1 A
111447490 TACATATACA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 30 1.00
ACGTcount: A:0.53, C:0.10, G:0.10, T:0.27
Consensus pattern (29 bp):
AGAAAATTAATAGTTACATACGAATATAC
Found at i:111460913 original size:25 final size:24
Alignment explanation
Indices: 111460881--111460932 Score: 68
Period size: 25 Copynumber: 2.1 Consensus size: 24
111460871 ATTTTGAAAT
*
111460881 TATAAAATATATAAAAAATTTAAA
1 TATAAAATATATAAAAAATATAAA
* *
111460905 TATATAAATTTATTAAAAATATAAA
1 TATA-AAATATATAAAAAATATAAA
111460930 TAT
1 TAT
111460933 TTATTAAAAA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
24 4 0.17
25 20 0.83
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (24 bp):
TATAAAATATATAAAAAATATAAA
Found at i:111460924 original size:19 final size:19
Alignment explanation
Indices: 111460902--111460943 Score: 68
Period size: 19 Copynumber: 2.2 Consensus size: 19
111460892 TAAAAAATTT
111460902 AAATATATAA-ATTTATTAA
1 AAATATA-AATATTTATTAA
111460921 AAATATAAATATTTATTAA
1 AAATATAAATATTTATTAA
111460940 AAAT
1 AAAT
111460944 CAAGCAAATT
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
18 2 0.09
19 20 0.91
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (19 bp):
AAATATAAATATTTATTAA
Found at i:111464600 original size:14 final size:14
Alignment explanation
Indices: 111464581--111464607 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
111464571 CGAGAAATTA
111464581 TTTTATATATATAT
1 TTTTATATATATAT
111464595 TTTTATATATATA
1 TTTTATATATATA
111464608 ACCTATTATA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (14 bp):
TTTTATATATATAT
Found at i:111465187 original size:24 final size:25
Alignment explanation
Indices: 111465160--111465209 Score: 68
Period size: 24 Copynumber: 2.0 Consensus size: 25
111465150 CTATTAATTG
*
111465160 TTTATTTAAAAG-TGTT-TAGTAAAA
1 TTTAATTAAAAGTTGTTGT-GTAAAA
111465184 TTTAATTAAAAGTTGTTGTGTAAAA
1 TTTAATTAAAAGTTGTTGTGTAAAA
111465209 T
1 T
111465210 AACAAAAAAA
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
24 11 0.48
25 11 0.48
26 1 0.04
ACGTcount: A:0.40, C:0.00, G:0.14, T:0.46
Consensus pattern (25 bp):
TTTAATTAAAAGTTGTTGTGTAAAA
Found at i:111465506 original size:23 final size:25
Alignment explanation
Indices: 111465464--111465512 Score: 66
Period size: 24 Copynumber: 2.0 Consensus size: 25
111465454 ACATTCTATT
**
111465464 ATTTTTATATAATTTTATA-TTATA
1 ATTTTTATATAATTACATATTTATA
111465488 ATTTTT-TATAATTACATATTTATA
1 ATTTTTATATAATTACATATTTATA
111465512 A
1 A
111465513 AATTATTTAA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
23 10 0.45
24 12 0.55
ACGTcount: A:0.39, C:0.02, G:0.00, T:0.59
Consensus pattern (25 bp):
ATTTTTATATAATTACATATTTATA
Found at i:111468582 original size:18 final size:18
Alignment explanation
Indices: 111468559--111468593 Score: 70
Period size: 18 Copynumber: 1.9 Consensus size: 18
111468549 CCCAGCCGTC
111468559 TTCTCATTTCTTTCTCAT
1 TTCTCATTTCTTTCTCAT
111468577 TTCTCATTTCTTTCTCA
1 TTCTCATTTCTTTCTCA
111468594 CGTCTGAAAC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.11, C:0.29, G:0.00, T:0.60
Consensus pattern (18 bp):
TTCTCATTTCTTTCTCAT
Found at i:111471634 original size:61 final size:61
Alignment explanation
Indices: 111471561--111471754 Score: 191
Period size: 61 Copynumber: 3.2 Consensus size: 61
111471551 TTATACTATT
*
111471561 ATATATTATAATTTTAGTAAATTCATATAAGAATATTTAATATTAAGAATTTTATTAAATC
1 ATATATTATAATTTAAGTAAATTCATATAAGAATATTTAATATTAAGAATTTTATTAAATC
* * * * * * * *
111471622 ATATATTTTAATTAAAATATATTTA-ATAATAATTATGTTAA-ATT-A-TATTTTA-TAGTATC
1 ATATATTATAATTTAAGTAAATTCATATAAGAA-TAT-TTAATATTAAGAATTTTATTA-AATC
* * * * *
111471681 ATATATTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAAGAATTTTATTAAATT
1 ATATATTATAATTTAAGTAAATTCATATAAGAATATTTAATATTAAGAATTTTATTAAATC
*
111471742 ATATATTTTAATT
1 ATATATTATAATT
111471755 AAAATATATT
Statistics
Matches: 101, Mismatches: 24, Indels: 16
0.72 0.17 0.11
Matches are distributed among these distances:
58 4 0.04
59 33 0.33
60 14 0.14
61 44 0.44
62 6 0.06
ACGTcount: A:0.44, C:0.02, G:0.06, T:0.48
Consensus pattern (61 bp):
ATATATTATAATTTAAGTAAATTCATATAAGAATATTTAATATTAAGAATTTTATTAAATC
Found at i:111471673 original size:120 final size:120
Alignment explanation
Indices: 111471519--111471785 Score: 453
Period size: 120 Copynumber: 2.2 Consensus size: 120
111471509 AAAAATTGAT
* * *
111471519 TATATTTAATAATAATTATGTTATATTATATTTTATACTATTATATATTATAATTTTAGTAAATT
1 TATATTTAATAATAATTATGTTAAATTATATTTTATACTATCATATATTATAATTTGAGTAAATT
*
111471584 CATATAAGAATATTTAATATTAAGAATTTTATTAAATCATATATTTTAATTAAAA
66 CATATAAGAATATTGAATATTAAGAATTTTATTAAATCATATATTTTAATTAAAA
* *
111471639 TATATTTAATAATAATTATGTTAAATTATATTTTATAGTATCATATATTATGATTTGAGTAAATT
1 TATATTTAATAATAATTATGTTAAATTATATTTTATACTATCATATATTATAATTTGAGTAAATT
* *
111471704 CATATAAGAATATTGATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAA
66 CATATAAGAATATTGAATATTAAGAATTTTATTAAATCATATATTTTAATTAAAA
111471759 TATATTTAATAATAATTATGTTTAAAT
1 TATATTTAATAATAATTATG-TTAAAT
111471786 ATGATTACAT
Statistics
Matches: 138, Mismatches: 8, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
120 132 0.96
121 6 0.04
ACGTcount: A:0.44, C:0.02, G:0.05, T:0.49
Consensus pattern (120 bp):
TATATTTAATAATAATTATGTTAAATTATATTTTATACTATCATATATTATAATTTGAGTAAATT
CATATAAGAATATTGAATATTAAGAATTTTATTAAATCATATATTTTAATTAAAA
Found at i:111471757 original size:18 final size:17
Alignment explanation
Indices: 111471729--111471763 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
111471719 ATTATTAAGA
*
111471729 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
111471746 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
111471764 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:111471953 original size:39 final size:40
Alignment explanation
Indices: 111471904--111472012 Score: 112
Period size: 44 Copynumber: 2.6 Consensus size: 40
111471894 AGTTTTTTCC
111471904 ATTATGCTATTACACCTCTATTCCATTCAACCAAACACAAG
1 ATTA-GCTATTACACCTCTATTCCATTCAACCAAACACAAG
* ***
111471945 ATTA-CTATTACGCCTCTATTTCATTACATTCAACCAAACAGTGG
1 ATTAGCTATTACACCTCTA-TTC----CATTCAACCAAACACAAG
*
111471989 ATTAGCTATTACACCTCTAATCCA
1 ATTAGCTATTACACCTCTATTCCA
111472013 ATACACCTCT
Statistics
Matches: 56, Mismatches: 6, Indels: 13
0.75 0.08 0.17
Matches are distributed among these distances:
39 13 0.23
40 5 0.09
41 4 0.07
44 21 0.38
45 13 0.23
ACGTcount: A:0.34, C:0.28, G:0.06, T:0.32
Consensus pattern (40 bp):
ATTAGCTATTACACCTCTATTCCATTCAACCAAACACAAG
Found at i:111472032 original size:17 final size:16
Alignment explanation
Indices: 111471998--111472050 Score: 97
Period size: 16 Copynumber: 3.2 Consensus size: 16
111471988 GATTAGCTAT
111471998 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
111472014 TACACCTCTAATCCCAA
1 TACACCTCTAAT-CCAA
111472031 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
111472047 TACA
1 TACA
111472051 GCGAACCAAA
Statistics
Matches: 36, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
16 20 0.56
17 16 0.44
ACGTcount: A:0.38, C:0.38, G:0.00, T:0.25
Consensus pattern (16 bp):
TACACCTCTAATCCAA
Found at i:111472391 original size:20 final size:20
Alignment explanation
Indices: 111472368--111472433 Score: 68
Period size: 20 Copynumber: 3.5 Consensus size: 20
111472358 AATTTTAATT
111472368 TTTAATAAAAA-TATTAAAAA
1 TTTAATAAAAATTA-TAAAAA
*
111472388 TTTATTAAAAATTATAAAAA
1 TTTAATAAAAATTATAAAAA
*
111472408 -TT-GTAAAAATTAT-AAAA
1 TTTAATAAAAATTATAAAAA
*
111472425 TTTTATAAA
1 TTTAATAAA
111472434 GTAGTAAGAA
Statistics
Matches: 40, Mismatches: 3, Indels: 7
0.80 0.06 0.14
Matches are distributed among these distances:
17 4 0.10
18 12 0.30
19 6 0.15
20 16 0.40
21 2 0.05
ACGTcount: A:0.59, C:0.00, G:0.02, T:0.39
Consensus pattern (20 bp):
TTTAATAAAAATTATAAAAA
Found at i:111472416 original size:10 final size:9
Alignment explanation
Indices: 111472344--111472455 Score: 66
Period size: 9 Copynumber: 11.9 Consensus size: 9
111472334 TGTACACTTA
111472344 ATAAAAATT
1 ATAAAAATT
*
111472353 AAAAAAATT
1 ATAAAAATT
* ***
111472362 TTAATTTTT
1 ATAAAAATT
111472371 AATAAAAA-T
1 -ATAAAAATT
111472380 ATTAAAAATTT
1 A-TAAAAA-TT
111472391 ATTAAAAATT
1 A-TAAAAATT
111472401 ATAAAAATT
1 ATAAAAATT
*
111472410 GTAAAAATT
1 ATAAAAATT
111472419 AT-AAAATT
1 ATAAAAATT
* * *
111472427 TTATAAAGT
1 ATAAAAATT
111472436 AGTAAGAAAATT
1 A-T-A-AAAATT
111472448 ATAAAAAT
1 ATAAAAAT
111472456 GTAAAGAAAT
Statistics
Matches: 77, Mismatches: 18, Indels: 16
0.69 0.16 0.14
Matches are distributed among these distances:
8 8 0.10
9 45 0.58
10 8 0.10
11 11 0.14
12 5 0.06
ACGTcount: A:0.60, C:0.00, G:0.04, T:0.37
Consensus pattern (9 bp):
ATAAAAATT
Found at i:111473726 original size:24 final size:24
Alignment explanation
Indices: 111473677--111473727 Score: 59
Period size: 24 Copynumber: 2.1 Consensus size: 24
111473667 TTACACTATT
* *
111473677 TTTGTGTTTAATAAAATTATTGTA
1 TTTGTATTTAATAAAATTATTCTA
*
111473701 TTTGTATTTAATATTAATTA-TCTA
1 TTTGTATTTAATA-AAATTATTCTA
111473725 TTT
1 TTT
111473728 TATAGATTAT
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
24 18 0.78
25 5 0.22
ACGTcount: A:0.31, C:0.02, G:0.08, T:0.59
Consensus pattern (24 bp):
TTTGTATTTAATAAAATTATTCTA
Found at i:111474302 original size:91 final size:91
Alignment explanation
Indices: 111474192--111474373 Score: 364
Period size: 91 Copynumber: 2.0 Consensus size: 91
111474182 TTATACATAT
111474192 ATATATATATATGTAACTCTCAGCTTTTTCACTTCTAGCAAAACTTGTTTGTGTTTGGCCTTTGG
1 ATATATATATATGTAACTCTCAGCTTTTTCACTTCTAGCAAAACTTGTTTGTGTTTGGCCTTTGG
111474257 GTTTCATTAGTTTTCCATTTAGAGTC
66 GTTTCATTAGTTTTCCATTTAGAGTC
111474283 ATATATATATATGTAACTCTCAGCTTTTTCACTTCTAGCAAAACTTGTTTGTGTTTGGCCTTTGG
1 ATATATATATATGTAACTCTCAGCTTTTTCACTTCTAGCAAAACTTGTTTGTGTTTGGCCTTTGG
111474348 GTTTCATTAGTTTTCCATTTAGAGTC
66 GTTTCATTAGTTTTCCATTTAGAGTC
111474374 TAAAAACTTT
Statistics
Matches: 91, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
91 91 1.00
ACGTcount: A:0.22, C:0.16, G:0.15, T:0.46
Consensus pattern (91 bp):
ATATATATATATGTAACTCTCAGCTTTTTCACTTCTAGCAAAACTTGTTTGTGTTTGGCCTTTGG
GTTTCATTAGTTTTCCATTTAGAGTC
Found at i:111481723 original size:51 final size:51
Alignment explanation
Indices: 111481647--111481750 Score: 208
Period size: 51 Copynumber: 2.0 Consensus size: 51
111481637 TATAGCAACC
111481647 AGGTAATAAAGTTCCACAACTCATCTAAGCTATACCTGGTACATACTCTGA
1 AGGTAATAAAGTTCCACAACTCATCTAAGCTATACCTGGTACATACTCTGA
111481698 AGGTAATAAAGTTCCACAACTCATCTAAGCTATACCTGGTACATACTCTGA
1 AGGTAATAAAGTTCCACAACTCATCTAAGCTATACCTGGTACATACTCTGA
111481749 AG
1 AG
111481751 TGAATTCCTC
Statistics
Matches: 53, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
51 53 1.00
ACGTcount: A:0.36, C:0.23, G:0.14, T:0.27
Consensus pattern (51 bp):
AGGTAATAAAGTTCCACAACTCATCTAAGCTATACCTGGTACATACTCTGA
Found at i:111484637 original size:366 final size:366
Alignment explanation
Indices: 111483935--111485407 Score: 2270
Period size: 366 Copynumber: 4.0 Consensus size: 366
111483925 AGCTCTAACA
* * * *
111483935 GTTGCAATTTCATGTTCAACTCGAGGAACTCCCTTTTG-TCCCATAACTGCCTCTGAAAGCACAT
1 GTTGCAGTTTCATGTTCAACTCGAGAAACTCCCTTTCGCT-CCATAACTGCCTCTGAAAGCGCAT
* ** *
111483999 CAGAACTAACAACAGAAAGACAATCTGTGCTTCTCTTTGAATTAACCGGCTCCTGTGCACAAAAG
65 CAGAACTAACAACAGAAAGACAATCCGCACTTCTCTTTGAATTAACCAGCTCCTGTGCACAAAAG
* * * *
111484064 TTGGCAACAGCAGCGCTAGCAATGCTGCTGCTGCGCCACCGTTTTTTCCTCCTACTGTAAACTAA
130 TTGGCAACAACAGCGCTAGCACTGCTGCTGCTGCCCCACCGTTTCTTCCT-C--CTGTAAACTAA
* *
111484129 AATCGGCATAGGACTTTCAAACATCACACTCACAGATAACCGCTGAGAACCAGTTTTGGGTAAGG
192 AATCGGCATAGGACTTTCAAACATCACACTCACAGATGACTGCTGAGAACCAGTTTTGGGTAAGG
* **
111484194 GAAGGCGTGAATCCTCAGCCTCTTTACATCCAGGTTGTGAAGTACCATCACATTTAGGAGTCATC
257 GAAGGCATGAATCCTCAGCCTCTTTACATCCACTTTGTGAAGTACCATCACATTTAGGAGTCATC
* ** * *
111484259 CGGAAAGTTTCATTATCAGATATCCAATCACATAAAGAAATCTTT
322 TGCCAAGTTTCATTACCAGACATCCAATCACATAAAGAAATCTTT
* * *
111484304 ATTGCAGTTTCACGTTCAACTTGAGAAACTCCCTTTCGCTCCATAACTGCCTCTGAAAGCGCATC
1 GTTGCAGTTTCATGTTCAACTCGAGAAACTCCCTTTCGCTCCATAACTGCCTCTGAAAGCGCATC
* *
111484369 AGAACTAACGACAGAAAGACAATCCGCGCTTCTCTTTGAATTAACCAGCTCCTGTGCACAAAAGT
66 AGAACTAACAACAGAAAGACAATCCGCACTTCTCTTTGAATTAACCAGCTCCTGTGCACAAAAGT
* * *
111484434 TGGCAACAACAGCGTTAGCACTGCTGCTTCTGCCCCACCGTTTCTTCCTCCTGTAAATTAAAATC
131 TGGCAACAACAGCGCTAGCACTGCTGCTGCTGCCCCACCGTTTCTTCCTCCTGTAAACTAAAATC
* * * *
111484499 GGAATAGGACTTTCAAACCTCATACTTACAGATGACTGCTGAGAACCAGTTTTGGGTAAGGGAAG
196 GGCATAGGACTTTCAAACATCACACTCACAGATGACTGCTGAGAACCAGTTTTGGGTAAGGGAAG
111484564 GCATGAATCCTCAGCCTCTTTACATCCACTTTGTGAAGTACCATCACATTTAGGAGTCATCTTG-
261 GCATGAATCCTCAGCCTCTTTACATCCACTTTGTGAAGTACCATCACATTTAGGAGTCATC-TGC
111484628 CAAGTTTCATTACCAGACATCCAATCACATAAAGAAATCTTT
325 CAAGTTTCATTACCAGACATCCAATCACATAAAGAAATCTTT
* * *
111484670 GTTGCAGTTTCATGTTCAACTTGAGAAACTCCCTTTCGCTCCATAACTGCCTCCGAAAGTGCATC
1 GTTGCAGTTTCATGTTCAACTCGAGAAACTCCCTTTCGCTCCATAACTGCCTCTGAAAGCGCATC
* *
111484735 AGAACTAACAACAGAAAGACAATCCGCACTTCTCTTTGAATTAA-CATGCTCCCGTGCATAAAAG
66 AGAACTAACAACAGAAAGACAATCCGCACTTCTCTTTGAATTAACCA-GCTCCTGTGCACAAAAG
* * * *
111484799 TTGGCAACAACAGAGCTAGCGCTGCTGCTGCTGCCCCACCGTTTCTTCCCCCTACTGTAAACTGA
130 TTGGCAACAACAGCGCTAGCACTGCTGCTGCTGCCCCACCGTTTCTT---CCTCCTGTAAACTAA
*
111484864 AATCGGCATAGGACTTTCAAACATCACACTCACAGATGGCTGCTGAGAACCAGTTTTGGGTAAGG
192 AATCGGCATAGGACTTTCAAACATCACACTCACAGATGACTGCTGAGAACCAGTTTTGGGTAAGG
*
111484929 GAAGGCATGAATCCTCAGCCTCTTTACATCCAGC-TTGTGAAGTACCATCACATTTAGGAATCAT
257 GAAGGCATGAATCCTCAGCCTCTTTACATCCA-CTTTGTGAAGTACCATCACATTTAGGAGTCAT
*
111484993 CTGCCAAGTTTCATTACCAGACATCCAATCACATAAAGAAGTCTTT
321 CTGCCAAGTTTCATTACCAGACATCCAATCACATAAAGAAATCTTT
* * *
111485039 GTTGCAGTTTCATGTTCAACTCGAGAAACTCCCTTTTGCTCCATAACTGCCTCTGAAAGTGCATT
1 GTTGCAGTTTCATGTTCAACTCGAGAAACTCCCTTTCGCTCCATAACTGCCTCTGAAAGCGCATC
* * *
111485104 AGAACTAAGAACAGAAAAACAATCCACACTTCTCTTTGAATTAACCAGCTCCTGTGCACAAAAGT
66 AGAACTAACAACAGAAAGACAATCCGCACTTCTCTTTGAATTAACCAGCTCCTGTGCACAAAAGT
* *
111485169 TGGCAACAACAGCACTAGCACTGCTGCTGCAGCCCCACCGTTTCTTCCTCCTGTAAACTAAAATC
131 TGGCAACAACAGCGCTAGCACTGCTGCTGCTGCCCCACCGTTTCTTCCTCCTGTAAACTAAAATC
* * * * * *
111485234 GGCGTTGGACTTTCAAACATCATACTCACAGATGACTGTTGAGAACCAATTTTGGGAAAGGGAAG
196 GGCATAGGACTTTCAAACATCACACTCACAGATGACTGCTGAGAACCAGTTTTGGGTAAGGGAAG
* *
111485299 GCATGAATCCCCAGCCTCTTTACAACCACTTTGTGAAGTACCATCACATTTAGGAGTCATCTGCC
261 GCATGAATCCTCAGCCTCTTTACATCCACTTTGTGAAGTACCATCACATTTAGGAGTCATCTGCC
111485364 AAGTTTCATTACCAGACATCCAATCACATAAAGAAATCTTT
326 AAGTTTCATTACCAGACATCCAATCACATAAAGAAATCTTT
111485405 GTT
1 GTT
111485408 TCCTGCATTC
Statistics
Matches: 1015, Mismatches: 79, Indels: 23
0.91 0.07 0.02
Matches are distributed among these distances:
365 3 0.00
366 509 0.50
367 1 0.00
368 3 0.00
369 495 0.49
370 4 0.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.27
Consensus pattern (366 bp):
GTTGCAGTTTCATGTTCAACTCGAGAAACTCCCTTTCGCTCCATAACTGCCTCTGAAAGCGCATC
AGAACTAACAACAGAAAGACAATCCGCACTTCTCTTTGAATTAACCAGCTCCTGTGCACAAAAGT
TGGCAACAACAGCGCTAGCACTGCTGCTGCTGCCCCACCGTTTCTTCCTCCTGTAAACTAAAATC
GGCATAGGACTTTCAAACATCACACTCACAGATGACTGCTGAGAACCAGTTTTGGGTAAGGGAAG
GCATGAATCCTCAGCCTCTTTACATCCACTTTGTGAAGTACCATCACATTTAGGAGTCATCTGCC
AAGTTTCATTACCAGACATCCAATCACATAAAGAAATCTTT
Done.