Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A06
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 115140250
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2234201 characters in sequence are not A, C, G, or T
File 339 of 345
Found at i:112883858 original size:42 final size:42
Alignment explanation
Indices: 112883794--112883954 Score: 171
Period size: 42 Copynumber: 3.7 Consensus size: 42
112883784 CTTCGTTTTC
** **
112883794 TCGATGCCATAGTTCAACTATGGTCTTACACATCTTCACATAA
1 TCGATGCCATAGCCCAGTTATGGTCTTACACATCTTCACAT-A
* *
112883837 T-GATGCCATAGCCCAGTTATGGTCTTACACATATTCATATA
1 TCGATGCCATAGCCCAGTTATGGTCTTACACATCTTCACATA
**
112883878 TCGATGCCATAGCCCAACTATGGTCTTACACGTGATCACATATCACATA
1 TCGATGCCATAGCCCAGTTATGGTCTTACAC---AT--C-T-TCACATA
112883927 TCGATGCCATAGCCCAGTTATGGTCTTA
1 TCGATGCCATAGCCCAGTTATGGTCTTA
112883955 TACGAATCAC
Statistics
Matches: 98, Mismatches: 12, Indels: 10
0.82 0.10 0.08
Matches are distributed among these distances:
41 2 0.02
42 60 0.61
43 1 0.01
45 2 0.02
48 1 0.01
49 32 0.33
ACGTcount: A:0.29, C:0.25, G:0.15, T:0.31
Consensus pattern (42 bp):
TCGATGCCATAGCCCAGTTATGGTCTTACACATCTTCACATA
Found at i:112883937 original size:49 final size:48
Alignment explanation
Indices: 112883864--112884000 Score: 161
Period size: 49 Copynumber: 2.9 Consensus size: 48
112883854 TATGGTCTTA
* * *
112883864 CACATATTCATATATCGATGCCATAGCCCAACTATGGTCTTACACGTGAT
1 CACATA-TCACATATCGATGCCATAGCCCAAATATGGTCTTACACG-AAT
** *
112883914 CACATATCACATATCGATGCCATAGCCCAGTTATGGTCTTATACGAAT
1 CACATATCACATATCGATGCCATAGCCCAAATATGGTCTTACACGAAT
* * *
112883962 CACATATCTCA-CT-GATGCCATATCCCAAATATGGTCTTA
1 CACATATCACATATCGATGCCATAGCCCAAATATGGTCTTA
112884001 TACAGTAGCG
Statistics
Matches: 77, Mismatches: 10, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
46 23 0.30
47 1 0.01
48 12 0.16
49 35 0.45
50 6 0.08
ACGTcount: A:0.31, C:0.26, G:0.13, T:0.30
Consensus pattern (48 bp):
CACATATCACATATCGATGCCATAGCCCAAATATGGTCTTACACGAAT
Found at i:112883995 original size:46 final size:46
Alignment explanation
Indices: 112883879--112884053 Score: 163
Period size: 47 Copynumber: 3.7 Consensus size: 46
112883869 ATTCATATAT
* * * * *
112883879 CGATGCCATAGCCCA-ACTATGGTCTTACACGTGATCACATATCACATAT
1 CGATGCCATATCCCAGA-TATGGTCTTATACG-AAGCACATATCAC--AC
* * * *
112883928 CGATGCCATAGCCCAGTTATGGTCTTATACGAATCACATATCTCAC
1 CGATGCCATATCCCAGATATGGTCTTATACGAAGCACATATCACAC
* * * **
112883974 TGATGCCATATCCCAAATATGGTCTTATACAGTAGCGTATATCACAC
1 CGATGCCATATCCCAGATATGGTCTTATAC-GAAGCACATATCACAC
*
112884021 CGATGTCATATCCCAGATATGGTCTTATACGAA
1 CGATGCCATATCCCAGATATGGTCTTATACGAA
112884054 AATCACTTGT
Statistics
Matches: 106, Mismatches: 18, Indels: 7
0.81 0.14 0.05
Matches are distributed among these distances:
46 29 0.27
47 38 0.36
48 11 0.10
49 28 0.26
ACGTcount: A:0.30, C:0.26, G:0.15, T:0.29
Consensus pattern (46 bp):
CGATGCCATATCCCAGATATGGTCTTATACGAAGCACATATCACAC
Found at i:112884104 original size:31 final size:31
Alignment explanation
Indices: 112884069--112884186 Score: 173
Period size: 31 Copynumber: 3.8 Consensus size: 31
112884059 CTTGTCACTT
* * * *
112884069 GTAGCTGAAGATACCACTATTCACTGATTAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
*
112884100 GTAGCCGGAGCTACCACTTTTCACTGATCAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
* *
112884131 GTAGTCGGAGCTACCACTTTTCACTGATCAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
112884162 GTAGCCGAAGCTACCACTTTTCACT
1 GTAGCCGAAGCTACCACTTTTCACT
112884187 TGTCATTTGT
Statistics
Matches: 79, Mismatches: 8, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 79 1.00
ACGTcount: A:0.25, C:0.26, G:0.20, T:0.28
Consensus pattern (31 bp):
GTAGCCGAAGCTACCACTTTTCACTGATCAG
Found at i:112888121 original size:31 final size:31
Alignment explanation
Indices: 112888086--112888151 Score: 132
Period size: 31 Copynumber: 2.1 Consensus size: 31
112888076 TTAGTAATAG
112888086 TTTGTCTTGGTAAATTGTGATAAGATCGGTA
1 TTTGTCTTGGTAAATTGTGATAAGATCGGTA
112888117 TTTGTCTTGGTAAATTGTGATAAGATCGGTA
1 TTTGTCTTGGTAAATTGTGATAAGATCGGTA
112888148 TTTG
1 TTTG
112888152 AGTGAGTATT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 35 1.00
ACGTcount: A:0.24, C:0.06, G:0.26, T:0.44
Consensus pattern (31 bp):
TTTGTCTTGGTAAATTGTGATAAGATCGGTA
Found at i:112888712 original size:18 final size:19
Alignment explanation
Indices: 112888689--112888727 Score: 71
Period size: 18 Copynumber: 2.1 Consensus size: 19
112888679 CACCTATAGT
112888689 AAATATGTACTT-AAAGAA
1 AAATATGTACTTAAAAGAA
112888707 AAATATGTACTTAAAAGAA
1 AAATATGTACTTAAAAGAA
112888726 AA
1 AA
112888728 GACAAATAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
18 12 0.60
19 8 0.40
ACGTcount: A:0.59, C:0.05, G:0.10, T:0.26
Consensus pattern (19 bp):
AAATATGTACTTAAAAGAA
Found at i:112893450 original size:6 final size:6
Alignment explanation
Indices: 112893441--112893555 Score: 230
Period size: 6 Copynumber: 19.2 Consensus size: 6
112893431 AAACATAAAA
112893441 ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT
1 ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT
112893489 ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT
1 ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT
112893537 ACATAT ACATAT ACATAT A
1 ACATAT ACATAT ACATAT A
112893556 TGCATTACAT
Statistics
Matches: 109, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 109 1.00
ACGTcount: A:0.50, C:0.17, G:0.00, T:0.33
Consensus pattern (6 bp):
ACATAT
Found at i:112895468 original size:20 final size:20
Alignment explanation
Indices: 112895431--112895468 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
112895421 AAATGGTAGG
*
112895431 TTCTAAAGAATTAAAGATTT
1 TTCTAAAGAAATAAAGATTT
112895451 TTCTAAA-AAATAATAGAT
1 TTCTAAAGAAATAA-AGAT
112895469 ATTATATAAC
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
19 5 0.31
20 11 0.69
ACGTcount: A:0.50, C:0.05, G:0.08, T:0.37
Consensus pattern (20 bp):
TTCTAAAGAAATAAAGATTT
Found at i:112896030 original size:37 final size:38
Alignment explanation
Indices: 112895989--112896070 Score: 93
Period size: 37 Copynumber: 2.2 Consensus size: 38
112895979 TAATTTTTAA
112895989 AATATTATATT-TTT-AATTA-TAGTAAT-TAATGTAAAAT
1 AATATTATATTATTTAAATTATTA--AATATAAT-TAAAAT
*
112896026 AATATT-TCTTATTTAAATTATTAAATATAATTAAAAT
1 AATATTATATTATTTAAATTATTAAATATAATTAAAAT
112896063 AATATTAT
1 AATATTAT
112896071 TTAAAATAAT
Statistics
Matches: 39, Mismatches: 1, Indels: 9
0.80 0.02 0.18
Matches are distributed among these distances:
36 3 0.08
37 24 0.62
38 10 0.26
39 2 0.05
ACGTcount: A:0.48, C:0.01, G:0.02, T:0.49
Consensus pattern (38 bp):
AATATTATATTATTTAAATTATTAAATATAATTAAAAT
Found at i:112896070 original size:24 final size:25
Alignment explanation
Indices: 112896038--112896110 Score: 80
Period size: 25 Copynumber: 2.9 Consensus size: 25
112896028 TATTTCTTAT
112896038 TTAA-ATTATTAAATATAATTAAAA
1 TTAATATTATTAAATATAATTAAAA
*
112896062 -TAATATTATTTAAA-ATAATAAAAAA
1 TTAATATTA-TTAAATATAAT-TAAAA
*
112896087 TTAATATAATTAAATAATAATTAA
1 TTAATATTATTAAAT-ATAATTAA
112896111 TATACTTAAA
Statistics
Matches: 40, Mismatches: 3, Indels: 10
0.75 0.06 0.19
Matches are distributed among these distances:
23 3 0.08
24 9 0.22
25 14 0.35
26 9 0.22
27 5 0.12
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (25 bp):
TTAATATTATTAAATATAATTAAAA
Found at i:112896222 original size:15 final size:15
Alignment explanation
Indices: 112896202--112896232 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
112896192 TGAAAATGAC
112896202 TCTAAAAAGGCCAAA
1 TCTAAAAAGGCCAAA
*
112896217 TCTAAAAATGCCAAA
1 TCTAAAAAGGCCAAA
112896232 T
1 T
112896233 TAACATTTAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.52, C:0.19, G:0.10, T:0.19
Consensus pattern (15 bp):
TCTAAAAAGGCCAAA
Found at i:112897101 original size:21 final size:21
Alignment explanation
Indices: 112897077--112897119 Score: 50
Period size: 21 Copynumber: 2.0 Consensus size: 21
112897067 AAATAATTTT
* *
112897077 AATAATTTTTTTATTTTTAAA
1 AATAATTTATATATTTTTAAA
* *
112897098 AATAGTTTATATGTTTTTAAA
1 AATAATTTATATATTTTTAAA
112897119 A
1 A
112897120 TTTAAAAAAT
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.40, C:0.00, G:0.05, T:0.56
Consensus pattern (21 bp):
AATAATTTATATATTTTTAAA
Found at i:112897833 original size:60 final size:60
Alignment explanation
Indices: 112897740--112897860 Score: 233
Period size: 60 Copynumber: 2.0 Consensus size: 60
112897730 CTTAGTATAA
*
112897740 TACCTTGTTTTGATTGTATCACACTATGTATCATTTAATAACCGAATAGATCCCCTATCT
1 TACCTTGTTTTGACTGTATCACACTATGTATCATTTAATAACCGAATAGATCCCCTATCT
112897800 TACCTTGTTTTGACTGTATCACACTATGTATCATTTAATAACCGAATAGATCCCCTATCT
1 TACCTTGTTTTGACTGTATCACACTATGTATCATTTAATAACCGAATAGATCCCCTATCT
112897860 T
1 T
112897861 TGGTTCAAAT
Statistics
Matches: 60, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
60 60 1.00
ACGTcount: A:0.28, C:0.22, G:0.10, T:0.40
Consensus pattern (60 bp):
TACCTTGTTTTGACTGTATCACACTATGTATCATTTAATAACCGAATAGATCCCCTATCT
Found at i:112899372 original size:23 final size:20
Alignment explanation
Indices: 112899326--112899362 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
112899316 CAATATTTGG
112899326 TAATAATAATTAATTTAAAA
1 TAATAATAATTAATTTAAAA
112899346 TAATAATAA-TAATTTAA
1 TAATAATAATTAATTTAA
112899363 TGAGCATAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
19 8 0.47
20 9 0.53
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (20 bp):
TAATAATAATTAATTTAAAA
Found at i:112899866 original size:20 final size:18
Alignment explanation
Indices: 112899831--112899875 Score: 72
Period size: 18 Copynumber: 2.5 Consensus size: 18
112899821 TAAGCCCCCC
112899831 AAAAAAACCTAACCCCAA
1 AAAAAAACCTAACCCCAA
**
112899849 AAAAAAACCTAACCCCCC
1 AAAAAAACCTAACCCCAA
112899867 AAAAAAACC
1 AAAAAAACC
112899876 AAGAAACCCT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
18 25 1.00
ACGTcount: A:0.60, C:0.36, G:0.00, T:0.04
Consensus pattern (18 bp):
AAAAAAACCTAACCCCAA
Found at i:112904835 original size:46 final size:41
Alignment explanation
Indices: 112904784--112904878 Score: 100
Period size: 46 Copynumber: 2.2 Consensus size: 41
112904774 ATGTGTTACT
* *
112904784 TTATATTATATCTATTATTTTTCTTATATGTTTATATTACATTTTA
1 TTATATAATATCTATTATGTTTC--AT-T-TTTATATTAC-TTTTA
* * *
112904830 TTATATAATCTTTATTATGTTTCATTTTTATATTACTTTTT
1 TTATATAATATCTATTATGTTTCATTTTTATATTACTTTTA
112904871 TTATATAA
1 TTATATAA
112904879 ATGTTATGTA
Statistics
Matches: 44, Mismatches: 5, Indels: 5
0.81 0.09 0.09
Matches are distributed among these distances:
41 12 0.27
42 10 0.23
43 1 0.02
44 2 0.05
46 19 0.43
ACGTcount: A:0.28, C:0.06, G:0.02, T:0.63
Consensus pattern (41 bp):
TTATATAATATCTATTATGTTTCATTTTTATATTACTTTTA
Found at i:112905437 original size:16 final size:17
Alignment explanation
Indices: 112905416--112905449 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 17
112905406 CATTTTTGTG
*
112905416 CTTTATAT-GTATTATT
1 CTTTATATCGTAGTATT
112905432 CTTTATATCGTAGTATT
1 CTTTATATCGTAGTATT
112905449 C
1 C
112905450 ATTTTTTATT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 8 0.50
17 8 0.50
ACGTcount: A:0.24, C:0.12, G:0.09, T:0.56
Consensus pattern (17 bp):
CTTTATATCGTAGTATT
Found at i:112917037 original size:119 final size:119
Alignment explanation
Indices: 112916826--112917057 Score: 367
Period size: 119 Copynumber: 1.9 Consensus size: 119
112916816 AATTGAAGAC
* *
112916826 AGCAGATCTAGACTTCAGACATTTATGCTGAAGCAGATCCAAGATGATTTGGTATTCTTGTGTTT
1 AGCAGATCTAGACTTCAGACATTTATACTGAAGCAGATCCAAGATGATTTGATATTCTTGTGTTT
* *
112916891 ACAAGAAACAAATCGAGGACATAGCAGATTTAACTCTCAGATGTTCTCAAATAT
66 ACAAGAAACAAATCGAGGACATAGCAGATATAACTCTCAAATGTTCTCAAATAT
**
112916945 AGCAGATCTA-ACTTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGATATTCTTGTGTT
1 AGCAGATCTAGAC-TTCAGACATTTATACTGAAGCAGATCCAAGATGATTTGATATTCTTGTGTT
* * *
112917009 TACAAGGAACAAATCGAGGACATTGCAGATATGACTCTCAAATGTTCTC
65 TACAAGAAACAAATCGAGGACATAGCAGATATAACTCTCAAATGTTCTC
112917058 CAACAGACTC
Statistics
Matches: 103, Mismatches: 9, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
118 2 0.02
119 101 0.98
ACGTcount: A:0.34, C:0.17, G:0.19, T:0.31
Consensus pattern (119 bp):
AGCAGATCTAGACTTCAGACATTTATACTGAAGCAGATCCAAGATGATTTGATATTCTTGTGTTT
ACAAGAAACAAATCGAGGACATAGCAGATATAACTCTCAAATGTTCTCAAATAT
Found at i:112917096 original size:83 final size:83
Alignment explanation
Indices: 112917001--112917912 Score: 1490
Period size: 83 Copynumber: 11.0 Consensus size: 83
112916991 ATTTGATATT
* *
112917001 CTTGTGTTTACAAGGAACAAATCGAGGACATTGCAGATATGACTCTCAAATGTTCTCCAACAGAC
1 CTTGTGCTTACAAGGAACAAATCGAGGACATTGCAGATATGACTCTCAAATGTTCTCAAACAGAC
*
112917066 TCAAGATGGTTTGGTATC
66 TCAAGATGGTTTGGCATC
112917084 CTTGTGCTTACAAGGAACAAATCGAGGACATTGCAGATATGACTCTCAAATGTTCTC-AACAGAC
1 CTTGTGCTTACAAGGAACAAATCGAGGACATTGCAGATATGACTCTCAAATGTTCTCAAACAGAC
112917148 TCAAGATGGTTTGGCATC
66 TCAAGATGGTTTGGCATC
*
112917166 CTTGTGC-TACAAGGAACAAATCGAGGACATTGCAGATATGACTCTCAAATGTTCTCAAATAGAC
1 CTTGTGCTTACAAGGAACAAATCGAGGACATTGCAGATATGACTCTCAAATGTTCTCAAACAGAC
*
112917230 T-AAGATGGTTTGGTATC
66 TCAAGATGGTTTGGCATC
*
112917247 CTTGTGCTTACAAGGAACAAATCGAGGACATTGCAGATATGACTCTCAAATGTTCTCCAACAGAC
1 CTTGTGCTTACAAGGAACAAATCGAGGACATTGCAGATATGACTCTCAAATGTTCTCAAACAGAC
112917312 TCAAGATGGTTTGGCATC
66 TCAAGATGGTTTGGCATC
* *
112917330 CTTGTGCTTACAAGGAACAAATCGAAGACATTGCAGATATGACTCTCAAATGTTCTCCAACAGAC
1 CTTGTGCTTACAAGGAACAAATCGAGGACATTGCAGATATGACTCTCAAATGTTCTCAAACAGAC
112917395 TCAAGATGGTTTGGCATC
66 TCAAGATGGTTTGGCATC
* * *
112917413 CTTGTGCTCACAAGGAACAAATCGAAGACATTGCAGATATGACTCTCAAATGTTCTCAAATAGAC
1 CTTGTGCTTACAAGGAACAAATCGAGGACATTGCAGATATGACTCTCAAATGTTCTCAAACAGAC
* *
112917478 TTAAGATGGTTTGGTATC
66 TCAAGATGGTTTGGCATC
* * *
112917496 CTTGTGCTTACAAGGAACAAATCAAGGACATTGCAGATATGGCTCTCAAATGTTCTCCAACAGAC
1 CTTGTGCTTACAAGGAACAAATCGAGGACATTGCAGATATGACTCTCAAATGTTCTCAAACAGAC
112917561 TCAAGATGGTTTGGCATC
66 TCAAGATGGTTTGGCATC
* * *
112917579 CTTGTGCTTACAAGGAACAAATCGAAGACATTGCAGATATAACTCTCAAATGTTCTCAAATAGAC
1 CTTGTGCTTACAAGGAACAAATCGAGGACATTGCAGATATGACTCTCAAATGTTCTCAAACAGAC
*
112917644 TCAAGATGGTTTGGTATC
66 TCAAGATGGTTTGGCATC
*
112917662 CTTGTGCTTACAAGGAACAAATCGAGGACATTGCAGATATGACTCTCAAATATTCTCAAACAGAC
1 CTTGTGCTTACAAGGAACAAATCGAGGACATTGCAGATATGACTCTCAAATGTTCTCAAACAGAC
*
112917727 TCAAGATGATTTGGCATC
66 TCAAGATGGTTTGGCATC
* *
112917745 TTTGTGCTTACAAGGAACAAATCGAGGACATTGCAGATATGACTCTCAAATGTTCTCAAATAGAC
1 CTTGTGCTTACAAGGAACAAATCGAGGACATTGCAGATATGACTCTCAAATGTTCTCAAACAGAC
** *
112917810 TCAAGATAATTTAGCATC
66 TCAAGATGGTTTGGCATC
* * * *
112917828 CTTGTGCTTACAAGGAACAAATCGAGGACGTAGTAGATATGACTCTCGAATGTTCTCAAAACAGA
1 CTTGTGCTTACAAGGAACAAATCGAGGACATTGCAGATATGACTCTCAAATGTTCTC-AAACAGA
*
112917893 CTCAA-ACTGATTTGGCATC
65 CTCAAGA-TGGTTTGGCATC
112917912 C
1 C
112917913 CCACAAATCG
Statistics
Matches: 777, Mismatches: 47, Indels: 9
0.93 0.06 0.01
Matches are distributed among these distances:
81 71 0.09
82 94 0.12
83 590 0.76
84 22 0.03
ACGTcount: A:0.33, C:0.20, G:0.20, T:0.28
Consensus pattern (83 bp):
CTTGTGCTTACAAGGAACAAATCGAGGACATTGCAGATATGACTCTCAAATGTTCTCAAACAGAC
TCAAGATGGTTTGGCATC
Found at i:112920337 original size:16 final size:17
Alignment explanation
Indices: 112920316--112920349 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 17
112920306 CATTTTTTTG
*
112920316 CTTTATAT-GTATTATT
1 CTTTATATCGTAGTATT
112920332 CTTTATATCGTAGTATT
1 CTTTATATCGTAGTATT
112920349 C
1 C
112920350 ATTTTTTATT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 8 0.50
17 8 0.50
ACGTcount: A:0.24, C:0.12, G:0.09, T:0.56
Consensus pattern (17 bp):
CTTTATATCGTAGTATT
Found at i:112922473 original size:134 final size:134
Alignment explanation
Indices: 112922298--112922562 Score: 372
Period size: 134 Copynumber: 2.0 Consensus size: 134
112922288 CCTTCATCCA
* ** * *
112922298 CTCCACTACAACTTCAGGGAGATAATAATTGTAACTTCAACCTGTCCTACTGCAACTTCAGGGGG
1 CTCCACTACAACTTCAGGGAGATAAGAATCATAACTTCAACCTGCCCCACTGCAACTTCAGGGGG
* *
112922363 ATAAGGTTTATAGCTTTAACTTTG-TTCTACTACAATTTCAGAGAGATAA-GATTTTCCATCTTC
66 ATAAGGTTTATAGCTTTAACTCTGCTT-TACTACAATTTCAGAGAGATAATG-TTTGCCATCTTC
112922426 GATCTG
129 GATCTG
* * * *
112922432 CTCCACTGCAACTTCAGGGAGATAGGACTCATAACTTCAACCTGCCCCACTGCCACTTCAGGGGG
1 CTCCACTACAACTTCAGGGAGATAAGAATCATAACTTCAACCTGCCCCACTGCAACTTCAGGGGG
* * *
112922497 ATAAGGTTTATAGCTTTAACTCTGCTTTACTGCAATTTTAGAGAGATAATGTTTGCTATCTTCGA
66 ATAAGGTTTATAGCTTTAACTCTGCTTTACTACAATTTCAGAGAGATAATGTTTGCCATCTTCGA
112922562 T
131 T
112922563 ACAAATGGAC
Statistics
Matches: 115, Mismatches: 14, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
134 112 0.97
135 3 0.03
ACGTcount: A:0.28, C:0.22, G:0.18, T:0.32
Consensus pattern (134 bp):
CTCCACTACAACTTCAGGGAGATAAGAATCATAACTTCAACCTGCCCCACTGCAACTTCAGGGGG
ATAAGGTTTATAGCTTTAACTCTGCTTTACTACAATTTCAGAGAGATAATGTTTGCCATCTTCGA
TCTG
Found at i:112924617 original size:62 final size:62
Alignment explanation
Indices: 112924551--112924676 Score: 166
Period size: 62 Copynumber: 2.0 Consensus size: 62
112924541 TATTTGAAAC
* * *
112924551 ATTTTAATATAATTTA-ATATAAA-AATAATTATATTAAAAATATTATTAAATTATATATTTTT
1 ATTTTAAT-TAAATTATAT-TAAATAATAATTATATTAAAAATATGATTAAATTATATATTATT
* * *
112924613 ATTTTTATTAAATTATATTAAATTATAATTATATTAAAAATATGATTAAATTATTTATTATT
1 ATTTTAATTAAATTATATTAAATAATAATTATATTAAAAATATGATTAAATTATATATTATT
112924675 AT
1 AT
112924677 ATTATTTTTA
Statistics
Matches: 56, Mismatches: 6, Indels: 4
0.85 0.09 0.06
Matches are distributed among these distances:
61 10 0.18
62 46 0.82
ACGTcount: A:0.48, C:0.00, G:0.01, T:0.52
Consensus pattern (62 bp):
ATTTTAATTAAATTATATTAAATAATAATTATATTAAAAATATGATTAAATTATATATTATT
Found at i:112924642 original size:16 final size:15
Alignment explanation
Indices: 112924619--112924650 Score: 55
Period size: 16 Copynumber: 2.1 Consensus size: 15
112924609 TTTTATTTTT
112924619 ATTAAATTATATTAA
1 ATTAAATTATATTAA
112924634 ATTATAATTATATTAA
1 ATTA-AATTATATTAA
112924650 A
1 A
112924651 AATATGATTA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 4 0.25
16 12 0.75
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (15 bp):
ATTAAATTATATTAA
Found at i:112929231 original size:18 final size:18
Alignment explanation
Indices: 112929210--112929273 Score: 67
Period size: 18 Copynumber: 3.4 Consensus size: 18
112929200 ATTTGCTATA
112929210 ATTTTTATATTTATACTT
1 ATTTTTATATTTATACTT
* * *
112929228 ATTTTTAT-TTAAGAGATT
1 ATTTTTATATTTATA-CTT
112929246 AACTTTTTATATTTATACTT
1 -A-TTTTTATATTTATACTT
112929266 ATTTTTAT
1 ATTTTTAT
112929274 TTAAGAGATT
Statistics
Matches: 36, Mismatches: 6, Indels: 8
0.72 0.12 0.16
Matches are distributed among these distances:
17 4 0.11
18 17 0.47
19 2 0.06
20 9 0.25
21 4 0.11
ACGTcount: A:0.30, C:0.05, G:0.03, T:0.62
Consensus pattern (18 bp):
ATTTTTATATTTATACTT
Found at i:112929258 original size:38 final size:38
Alignment explanation
Indices: 112929211--112929286 Score: 152
Period size: 38 Copynumber: 2.0 Consensus size: 38
112929201 TTTGCTATAA
112929211 TTTTTATATTTATACTTATTTTTATTTAAGAGATTAAC
1 TTTTTATATTTATACTTATTTTTATTTAAGAGATTAAC
112929249 TTTTTATATTTATACTTATTTTTATTTAAGAGATTAAC
1 TTTTTATATTTATACTTATTTTTATTTAAGAGATTAAC
112929287 CAAAAAAATT
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 38 1.00
ACGTcount: A:0.32, C:0.05, G:0.05, T:0.58
Consensus pattern (38 bp):
TTTTTATATTTATACTTATTTTTATTTAAGAGATTAAC
Found at i:112933044 original size:17 final size:17
Alignment explanation
Indices: 112933019--112933051 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
112933009 TAATATTGTT
*
112933019 TTTATTTTGGGTTGGGG
1 TTTAATTTGGGTTGGGG
112933036 TTTAATTTGGGTTGGG
1 TTTAATTTGGGTTGGG
112933052 TTGGATTTAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.09, C:0.00, G:0.39, T:0.52
Consensus pattern (17 bp):
TTTAATTTGGGTTGGGG
Found at i:112936843 original size:21 final size:19
Alignment explanation
Indices: 112936805--112936843 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 19
112936795 AAAATTATTA
112936805 TTTATAAAAAATTTAAAAT
1 TTTATAAAAAATTTAAAAT
*
112936824 TTTATCAAATAATATTAAAA
1 TTTAT-AAAAAAT-TTAAAA
112936844 AAACTTATTA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 5 0.29
20 6 0.35
21 6 0.35
ACGTcount: A:0.56, C:0.03, G:0.00, T:0.41
Consensus pattern (19 bp):
TTTATAAAAAATTTAAAAT
Found at i:112940461 original size:20 final size:20
Alignment explanation
Indices: 112940424--112940461 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
112940414 CCTAATAAAA
**
112940424 CATTTTGTTCCATTTAAATC
1 CATTTTGTTCCAGGTAAATC
112940444 CATTTTGTTCCAGGTAAA
1 CATTTTGTTCCAGGTAAA
112940462 CTTAAAAATG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.26, C:0.18, G:0.11, T:0.45
Consensus pattern (20 bp):
CATTTTGTTCCAGGTAAATC
Found at i:112950262 original size:27 final size:27
Alignment explanation
Indices: 112950232--112950286 Score: 76
Period size: 27 Copynumber: 2.0 Consensus size: 27
112950222 TAAATATATC
* *
112950232 ATTTTT-ATAATTTTGTTTATATTTTTT
1 ATTTTTAATAATTTT-TTAATAATTTTT
112950259 ATTTTTAATAATTTTTTAATAATTTTT
1 ATTTTTAATAATTTTTTAATAATTTTT
112950286 A
1 A
112950287 GAGATATTTT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
27 17 0.68
28 8 0.32
ACGTcount: A:0.29, C:0.00, G:0.02, T:0.69
Consensus pattern (27 bp):
ATTTTTAATAATTTTTTAATAATTTTT
Found at i:112950274 original size:11 final size:11
Alignment explanation
Indices: 112950260--112950285 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
112950250 ATATTTTTTA
112950260 TTTTTAATAAT
1 TTTTTAATAAT
112950271 TTTTTAATAAT
1 TTTTTAATAAT
112950282 TTTT
1 TTTT
112950286 AGAGATATTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (11 bp):
TTTTTAATAAT
Found at i:112952645 original size:11 final size:11
Alignment explanation
Indices: 112952629--112952653 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
112952619 CAAGCCATAT
112952629 TAACTCTTATA
1 TAACTCTTATA
112952640 TAACTCTTATA
1 TAACTCTTATA
112952651 TAA
1 TAA
112952654 GCATGATTTG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.40, C:0.16, G:0.00, T:0.44
Consensus pattern (11 bp):
TAACTCTTATA
Found at i:112955004 original size:26 final size:26
Alignment explanation
Indices: 112954968--112955019 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
112954958 GTTTGAGTGG
112954968 GTTTTCTGTCATTTAGTCACATATAA
1 GTTTTCTGTCATTTAGTCACATATAA
*
112954994 GTTTTCTGTCATTTAGTCACGTATAA
1 GTTTTCTGTCATTTAGTCACATATAA
112955020 TAGTTATAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.15, G:0.13, T:0.46
Consensus pattern (26 bp):
GTTTTCTGTCATTTAGTCACATATAA
Found at i:112962237 original size:64 final size:64
Alignment explanation
Indices: 112962045--112962238 Score: 298
Period size: 64 Copynumber: 3.0 Consensus size: 64
112962035 TCATGTATCA
* **
112962045 TATCACATCTGGTTAGGAGCATTTGATTCATTTCAATCATAGCATCCTAATTATTTGACATAAG
1 TATCACATCTAGTTAGGAGCATTTGATTCATTTTGATCATAGCATCCTAATTATTTGACATAAG
* * *
112962109 CATCACATCTAGTTAGGTGCATTTGATTCATTTTGATCATAGTATCCTAATTATTTGACATAAG
1 TATCACATCTAGTTAGGAGCATTTGATTCATTTTGATCATAGCATCCTAATTATTTGACATAAG
* * * *
112962173 TATTACATCTAGTTAGGAGTATTTGATTCATTTTGATCATAACATCCTAATTATTTGGCATAAG
1 TATCACATCTAGTTAGGAGCATTTGATTCATTTTGATCATAGCATCCTAATTATTTGACATAAG
112962237 TA
1 TA
112962239 AGATACAAAA
Statistics
Matches: 117, Mismatches: 13, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
64 117 1.00
ACGTcount: A:0.31, C:0.15, G:0.14, T:0.40
Consensus pattern (64 bp):
TATCACATCTAGTTAGGAGCATTTGATTCATTTTGATCATAGCATCCTAATTATTTGACATAAG
Found at i:112962671 original size:177 final size:177
Alignment explanation
Indices: 112962372--112962856 Score: 602
Period size: 177 Copynumber: 2.7 Consensus size: 177
112962362 AATCATAACA
* * * * **
112962372 AGTCTTATCTCCCTGAGGTTGC-AGTGGAGTAGACTGAAGATTGAAAGATCTTATCTTTCTAAGC
1 AGTCTTATCTTCCTGAGGTAGCAAG-GAAGCAGACTGAAGATTG-AAGATCTTATCTCCCTAAGC
* * *
112962436 AGTAGCAGAGTAGATCGAAGATGGCGAATCTTATCTCCATGTAACGGCAATAGAGCAGATTTTAG
64 AGTAGCGGAGTAGATCGAAGATGGCGAATCTTATCTCCATGTATCGGCAATGGAGCAGATTTTAG
112962501 CCATTGACCTTATCT-TGCTAAGGTAGCAAGAGAGCAGGTTGAAGA-AGAT
129 CCATTGACCTTATCTCT-CTAAGGTAGCAAGAGAGCAGGTTGAAGATAG-T
* * *
112962550 GGTCTTATGTTCCTGAGGTAGCAAGGAAGCAGAGTGAAGATTGAAGATCTTATCTCCCTAAGCAG
1 AGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGACTGAAGATTGAAGATCTTATCTCCCTAAGCAG
* * * * * *
112962615 TAGCGGAGCAGATAGAGGATGGCGAATCTTATCTCCATATATCAGCAATGGAGCAGATTTTAGCT
66 TAGCGGAGTAGATCGAAGATGGCGAATCTTATCTCCATGTATCGGCAATGGAGCAGATTTTAGCC
* ** *
112962680 ATTGACCTTATCTCTCTGAGGTAGCAAGAGAGCAGGTTGGTGATTGT
131 ATTGACCTTATCTCTCTAAGGTAGCAAGAGAGCAGGTTGAAGATAGT
* * * *
112962727 AGTCTTATCTTTCTGAGGTAGCAAGGAAGCAGACTAAAGATTGAAGATCTTATTTCCCTGAA-TA
1 AGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGACTGAAGATTGAAGATCTTATCTCCCT-AAGCA
* * * * *
112962791 GAAGTGGAGTAGATCGAAAGA-GGCGAATCTTATCTCCATGTATCGGTAATGGAGCAGGTTTAAG
65 GTAGCGGAGTAGATCG-AAGATGGCGAATCTTATCTCCATGTATCGGCAATGGAGCAGATTTTAG
112962855 CC
129 CC
112962857 CCAAGATTTA
Statistics
Matches: 262, Mismatches: 40, Indels: 11
0.84 0.13 0.04
Matches are distributed among these distances:
177 220 0.84
178 40 0.15
179 2 0.01
ACGTcount: A:0.30, C:0.16, G:0.26, T:0.28
Consensus pattern (177 bp):
AGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGACTGAAGATTGAAGATCTTATCTCCCTAAGCAG
TAGCGGAGTAGATCGAAGATGGCGAATCTTATCTCCATGTATCGGCAATGGAGCAGATTTTAGCC
ATTGACCTTATCTCTCTAAGGTAGCAAGAGAGCAGGTTGAAGATAGT
Found at i:112962769 original size:44 final size:45
Alignment explanation
Indices: 112962686--112962779 Score: 102
Period size: 44 Copynumber: 2.1 Consensus size: 45
112962676 AGCTATTGAC
** *** *
112962686 CTTATCTCTCTGAGGTAGCAAGAGAGCAGGTTGGTGATTGTAG-T
1 CTTATCTCTCTGAGGTAGCAAGAGAGCAGACTAAAGATTGAAGAT
*
112962730 CTTATCTTTCTGAGGTAGCAAG-GAAGCAGACTAAAGATTGAAGAT
1 CTTATCTCTCTGAGGTAGCAAGAG-AGCAGACTAAAGATTGAAGAT
112962775 CTTAT
1 CTTAT
112962780 TTCCCTGAAT
Statistics
Matches: 41, Mismatches: 7, Indels: 3
0.80 0.14 0.06
Matches are distributed among these distances:
43 1 0.02
44 34 0.83
45 6 0.15
ACGTcount: A:0.29, C:0.14, G:0.27, T:0.31
Consensus pattern (45 bp):
CTTATCTCTCTGAGGTAGCAAGAGAGCAGACTAAAGATTGAAGAT
Found at i:112962886 original size:89 final size:89
Alignment explanation
Indices: 112962770--112962936 Score: 239
Period size: 89 Copynumber: 1.9 Consensus size: 89
112962760 CTAAAGATTG
*
112962770 AAGATCTTATTTCCCTGAATAGAAGTGGAGTAGATCGAAAGA-GGCGAATCTTATCTCCATGTAT
1 AAGATCTTATTTCCCTGAATAGAAGTGGAGCAGATCG-AAGATGGCGAATCTTATCTCCATGTAT
*
112962834 CGGTAATGGAGCAGGTTTAAGCCCC
65 CGGAAATGGAGCAGGTTTAAGCCCC
* * * * *
112962859 AAGAT-TTATTTTCCTGAAGTTGCAGTGGAGCAGATTGAAGATGGTGAATCTTATCTCCATGTAT
1 AAGATCTTATTTCCCTGAA-TAGAAGTGGAGCAGATCGAAGATGGCGAATCTTATCTCCATGTAT
112962923 CGGAAATGGAGCAG
65 CGGAAATGGAGCAG
112962937 ATTTTACTAC
Statistics
Matches: 69, Mismatches: 7, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
88 16 0.23
89 53 0.77
ACGTcount: A:0.30, C:0.16, G:0.26, T:0.29
Consensus pattern (89 bp):
AAGATCTTATTTCCCTGAATAGAAGTGGAGCAGATCGAAGATGGCGAATCTTATCTCCATGTATC
GGAAATGGAGCAGGTTTAAGCCCC
Found at i:112962979 original size:89 final size:89
Alignment explanation
Indices: 112962815--112962988 Score: 201
Period size: 89 Copynumber: 2.0 Consensus size: 89
112962805 CGAAAGAGGC
* * * * * *
112962815 GAATCTTATCTCCATGTATCGGTAATGGAGCAGGTTTAAGCCCCAAGATTTATTTTCCTGAAGTT
1 GAATCTTATCTCCATGTATCGGAAATGGAGCAGATTTAAGCACCAAGACTTATTCTCCTGAAGTA
*
112962880 GCAGTGGAGCAGATTGAAGATGGT
66 GCAGTAGAGCAGATTGAAGATGGT
* * *
112962904 GAATCTTATCTCCATGTATCGGAAATGGAGCAGATTTTA-CTACCAAGCCTTA-TCTCTCTGACG
1 GAATCTTATCTCCATGTATCGGAAATGGAGCAGATTTAAGC-ACCAAGACTTATTCTC-CTGAAG
*
112962967 TAGCAAG-AGAGCAGGTTGAAGA
64 TAGC-AGTAGAGCAGATTGAAGA
112962989 ATGAGTCTTA
Statistics
Matches: 71, Mismatches: 11, Indels: 6
0.81 0.12 0.07
Matches are distributed among these distances:
88 4 0.06
89 65 0.92
90 2 0.03
ACGTcount: A:0.29, C:0.18, G:0.24, T:0.29
Consensus pattern (89 bp):
GAATCTTATCTCCATGTATCGGAAATGGAGCAGATTTAAGCACCAAGACTTATTCTCCTGAAGTA
GCAGTAGAGCAGATTGAAGATGGT
Found at i:112966629 original size:30 final size:31
Alignment explanation
Indices: 112966569--112966629 Score: 79
Period size: 30 Copynumber: 2.0 Consensus size: 31
112966559 TAATTATACA
** *
112966569 AAATCAAAATTTATATACCAAATTGCATATT
1 AAATCAAAATCCATATACCAAATTGAATATT
*
112966600 AAATCAAAATCCAT-TACCAAATTTAATATT
1 AAATCAAAATCCATATACCAAATTGAATATT
112966630 TATCGTAGAG
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
30 14 0.54
31 12 0.46
ACGTcount: A:0.49, C:0.15, G:0.02, T:0.34
Consensus pattern (31 bp):
AAATCAAAATCCATATACCAAATTGAATATT
Found at i:112973228 original size:12 final size:12
Alignment explanation
Indices: 112973211--112973236 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
112973201 TACATCATTC
112973211 ACCCGGAAATTT
1 ACCCGGAAATTT
112973223 ACCCGGAAATTT
1 ACCCGGAAATTT
112973235 AC
1 AC
112973237 TTATTTGCTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.35, C:0.27, G:0.15, T:0.23
Consensus pattern (12 bp):
ACCCGGAAATTT
Found at i:112975401 original size:130 final size:130
Alignment explanation
Indices: 112975174--112975414 Score: 322
Period size: 130 Copynumber: 1.9 Consensus size: 130
112975164 TAAAAAATAC
* * *
112975174 GAGTGAAATTTCGAGGAGATATTCAACTATTTTGGACAAATGAAAAAACGCAGCCCAACACGATA
1 GAGTGAAATTTCGAGGAGATATTCAACTATTTCGGACAAACGAAAAAACGCAACCCAACACGATA
*
112975239 GGGCTCGATTCTCAAATCGCCAAACATCGAACATCGCCTTCATTTTGAAAGATTTTAGAAAATGT
66 GGGCACGATTCTCAAATCGCCAAACATCGAACATCGCCTTCATTTTGAAAGATTTTAGAAAATGT
* * * * * * * *
112975304 GAGTGAAATTTTGAAGG-GATCTTCAATTGTTTCGGACCAACGAAAAAGCGCAACCCAGCACGGT
1 GAGTGAAATTTCG-AGGAGATATTCAACTATTTCGGACAAACGAAAAAACGCAACCCAACACGAT
* * * *
112975368 AGGGCACGATTCTCAAATGGCCAAACATTGAACATCGTCTTCGTTTT
65 AGGGCACGATTCTCAAATCGCCAAACATCGAACATCGCCTTCATTTT
112975415 TTAAGTATTT
Statistics
Matches: 94, Mismatches: 16, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
130 91 0.97
131 3 0.03
ACGTcount: A:0.34, C:0.20, G:0.20, T:0.25
Consensus pattern (130 bp):
GAGTGAAATTTCGAGGAGATATTCAACTATTTCGGACAAACGAAAAAACGCAACCCAACACGATA
GGGCACGATTCTCAAATCGCCAAACATCGAACATCGCCTTCATTTTGAAAGATTTTAGAAAATGT
Found at i:112975623 original size:131 final size:132
Alignment explanation
Indices: 112975465--112975781 Score: 372
Period size: 131 Copynumber: 2.4 Consensus size: 132
112975455 TGTTCGATCG
** * * * * *
112975465 TTTTGAGCAAACGA-GAAATCACAACCCAGCACGATAGGGCATGATT-CTCGAATTTTC-AAATG
1 TTTTGAGCAAAC-ACGAAATTGCAACCCAACACGTTAGGGCACGATTCCTCGAATTTACTAAATA
** * * **
112975527 TCAAATATTGCCTTCGTTTTAAATAATTTTTAGAAGATGTGAATGAAATCTTGAAGGGATACTCG
65 TCAAATACCGCCTTCGTTTTAAAGAA-TTTTAAAAGACATGAATGAAATCTTGAAGGGATACTCG
112975592 ATTA
129 ATTA
*
112975596 TTTTGAGCAAACACGAAATTGCAACCCAACACGTTAGGGCACGATTCCGCGAA-TTACTAAATAT
1 TTTTGAGCAAACACGAAATTGCAACCCAACACGTTAGGGCACGATTCCTCGAATTTACTAAATAT
* * * * * * * *
112975660 CGAATCCCGTCTTCGTTTTGAAGAATTTTAAAAGACATGAATGAAATTTTGAAGTGATATTCGGT
66 CAAATACCGCCTTCGTTTTAAAGAATTTTAAAAGACATGAATGAAATCTTGAAGGGATACTCGAT
112975725 TA
131 TA
* *
112975727 TTTTGAGCAAACGCGAAATTGTAACCCAACACGTTAGGGCACGATTCCTCGAATT
1 TTTTGAGCAAACACGAAATTGCAACCCAACACGTTAGGGCACGATTCCTCGAATT
112975782 GCCAAACAAC
Statistics
Matches: 157, Mismatches: 25, Indels: 7
0.83 0.13 0.04
Matches are distributed among these distances:
130 1 0.01
131 127 0.81
132 29 0.18
ACGTcount: A:0.34, C:0.18, G:0.19, T:0.30
Consensus pattern (132 bp):
TTTTGAGCAAACACGAAATTGCAACCCAACACGTTAGGGCACGATTCCTCGAATTTACTAAATAT
CAAATACCGCCTTCGTTTTAAAGAATTTTAAAAGACATGAATGAAATCTTGAAGGGATACTCGAT
TA
Found at i:112975795 original size:131 final size:131
Alignment explanation
Indices: 112975538--112975820 Score: 377
Period size: 131 Copynumber: 2.1 Consensus size: 131
112975528 CAAATATTGC
* * * **
112975538 CTTCGTTTTAAATAATTTTTAGAAGATGTGAATGAAATCTTGAAGGGATACTCGATTATTTTGAG
1 CTTCGTTTTGAAGAA-TTTTAAAAGACATGAATGAAATCTTGAAGGGATACTCGATTATTTTGAG
* * *
112975603 CAAACACGAAATTGCAACCCAACACGTTAGGGCACGATTCCGCGAATTACTAAATATCGAATCCC
65 CAAACACGAAATTGCAACCCAACACGTTAGGGCACGATTCCGCGAATTACCAAACAACGAATCCC
*
112975668 GT
130 AT
* * * *
112975670 CTTCGTTTTGAAGAATTTTAAAAGACATGAATGAAATTTTGAAGTGATATTCGGTTATTTTGAGC
1 CTTCGTTTTGAAGAATTTTAAAAGACATGAATGAAATCTTGAAGGGATACTCGATTATTTTGAGC
* * * * *
112975735 AAACGCGAAATTGTAACCCAACACGTTAGGGCACGATTCCTCGAATTGCCAAACAACGAATCTCA
66 AAACACGAAATTGCAACCCAACACGTTAGGGCACGATTCCGCGAATTACCAAACAACGAATCCCA
112975800 T
131 T
*
112975801 CTTTGTTTTTGAAGAATTTT
1 CTTCG-TTTTGAAGAATTTT
112975821 TGAATGAATG
Statistics
Matches: 131, Mismatches: 19, Indels: 2
0.86 0.12 0.01
Matches are distributed among these distances:
131 104 0.79
132 27 0.21
ACGTcount: A:0.33, C:0.17, G:0.18, T:0.32
Consensus pattern (131 bp):
CTTCGTTTTGAAGAATTTTAAAAGACATGAATGAAATCTTGAAGGGATACTCGATTATTTTGAGC
AAACACGAAATTGCAACCCAACACGTTAGGGCACGATTCCGCGAATTACCAAACAACGAATCCCA
T
Found at i:112981656 original size:23 final size:23
Alignment explanation
Indices: 112981626--112981672 Score: 94
Period size: 23 Copynumber: 2.0 Consensus size: 23
112981616 AAGGCAGAGG
112981626 TCCTAGGTCTTGAATACTTAAAT
1 TCCTAGGTCTTGAATACTTAAAT
112981649 TCCTAGGTCTTGAATACTTAAAT
1 TCCTAGGTCTTGAATACTTAAAT
112981672 T
1 T
112981673 TAAGATTCAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.30, C:0.17, G:0.13, T:0.40
Consensus pattern (23 bp):
TCCTAGGTCTTGAATACTTAAAT
Found at i:112984146 original size:16 final size:17
Alignment explanation
Indices: 112984125--112984158 Score: 61
Period size: 16 Copynumber: 2.1 Consensus size: 17
112984115 TTTTTATTTT
112984125 TAAAAAATTTAC-AAAA
1 TAAAAAATTTACTAAAA
112984141 TAAAAAATTTACTAAAA
1 TAAAAAATTTACTAAAA
112984158 T
1 T
112984159 TTTAAAATTT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 12 0.71
17 5 0.29
ACGTcount: A:0.65, C:0.06, G:0.00, T:0.29
Consensus pattern (17 bp):
TAAAAAATTTACTAAAA
Found at i:112991965 original size:29 final size:29
Alignment explanation
Indices: 112991910--112991966 Score: 71
Period size: 31 Copynumber: 1.9 Consensus size: 29
112991900 AAAATTATAT
*
112991910 TTGATTTGTCACATACATGGCAAATGTTAG
1 TTGATTTGTCACACACATGGC-AATGTTAG
*
112991940 TTGATTGTGTCACACACATTGC-ATGTT
1 TTGATT-TGTCACACACATGGCAATGTT
112991967 TGAGTTTGAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
29 5 0.21
30 6 0.25
31 13 0.54
ACGTcount: A:0.26, C:0.16, G:0.19, T:0.39
Consensus pattern (29 bp):
TTGATTTGTCACACACATGGCAATGTTAG
Found at i:112997333 original size:25 final size:24
Alignment explanation
Indices: 112997305--112997385 Score: 73
Period size: 24 Copynumber: 3.4 Consensus size: 24
112997295 TTATTGAGTG
112997305 TTAGTAAAATGTTATTAAAAGCTCA
1 TTAG-AAAATGTTATTAAAAGCTCA
*
112997330 TTAGAAAA--TT-TTAAATTGAG-T-G
1 TTAGAAAATGTTATTAAA---AGCTCA
112997352 TTAGTAAAATGTTATTAAAAGCTCA
1 TTAG-AAAATGTTATTAAAAGCTCA
112997377 TTAGAAAAT
1 TTAGAAAAT
112997386 TTTAACGTTT
Statistics
Matches: 45, Mismatches: 2, Indels: 19
0.68 0.03 0.29
Matches are distributed among these distances:
21 5 0.11
22 6 0.13
23 7 0.16
24 12 0.27
25 10 0.22
26 5 0.11
ACGTcount: A:0.44, C:0.05, G:0.14, T:0.37
Consensus pattern (24 bp):
TTAGAAAATGTTATTAAAAGCTCA
Found at i:112997350 original size:47 final size:47
Alignment explanation
Indices: 112997297--112997390 Score: 188
Period size: 47 Copynumber: 2.0 Consensus size: 47
112997287 ATAAATATTT
112997297 ATTGAGTGTTAGTAAAATGTTATTAAAAGCTCATTAGAAAATTTTAA
1 ATTGAGTGTTAGTAAAATGTTATTAAAAGCTCATTAGAAAATTTTAA
112997344 ATTGAGTGTTAGTAAAATGTTATTAAAAGCTCATTAGAAAATTTTAA
1 ATTGAGTGTTAGTAAAATGTTATTAAAAGCTCATTAGAAAATTTTAA
112997391 CGTTTGGGTG
Statistics
Matches: 47, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
47 47 1.00
ACGTcount: A:0.43, C:0.04, G:0.15, T:0.38
Consensus pattern (47 bp):
ATTGAGTGTTAGTAAAATGTTATTAAAAGCTCATTAGAAAATTTTAA
Found at i:112998763 original size:41 final size:40
Alignment explanation
Indices: 112998687--112998772 Score: 100
Period size: 41 Copynumber: 2.1 Consensus size: 40
112998677 CAAATACATT
*
112998687 TAAAACAAATATTAAAACAAGAAACAAATAAAAAATGATAC
1 TAAAACAAATATTAAAACAAGAAACAAATAAAAAAT-ATAA
* * * * **
112998728 TAAAACAATTCTTAAAACAATACACAAATTGAAAATATAA
1 TAAAACAAATATTAAAACAAGAAACAAATAAAAAATATAA
112998768 TAAAA
1 TAAAA
112998773 AGTGATTATA
Statistics
Matches: 38, Mismatches: 7, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
40 8 0.21
41 30 0.79
ACGTcount: A:0.65, C:0.10, G:0.03, T:0.21
Consensus pattern (40 bp):
TAAAACAAATATTAAAACAAGAAACAAATAAAAAATATAA
Found at i:112999112 original size:35 final size:36
Alignment explanation
Indices: 112999016--112999118 Score: 129
Period size: 35 Copynumber: 2.9 Consensus size: 36
112999006 CTGTGACATA
* * *
112999016 TAGGTATGGTATTATCCATACCAAGCTAT-AATACG
1 TAGGTATGGTATTATCCATACCGAGTTGTGAATACG
* *
112999051 TAGGTATGGTATTTTTCATACCGAGTTGTGAA-ACG
1 TAGGTATGGTATTATCCATACCGAGTTGTGAATACG
* *
112999086 TAGGTATGGTATTAACCATACGGAGTTGTGAAT
1 TAGGTATGGTATTATCCATACCGAGTTGTGAAT
112999119 TATAACACTG
Statistics
Matches: 57, Mismatches: 9, Indels: 3
0.83 0.13 0.04
Matches are distributed among these distances:
35 55 0.96
36 2 0.04
ACGTcount: A:0.30, C:0.13, G:0.23, T:0.34
Consensus pattern (36 bp):
TAGGTATGGTATTATCCATACCGAGTTGTGAATACG
Found at i:113000492 original size:48 final size:48
Alignment explanation
Indices: 113000421--113000607 Score: 207
Period size: 48 Copynumber: 3.9 Consensus size: 48
113000411 AAAGGATACA
* **
113000421 CTGATTTGGCTTCGGGCCATGATATCAGCACTTCGGGTGCGAGTTACT
1 CTGATTTAGCTTCGGGCCATGATATTGGCACTTCGGGTGCGAGTTACT
** *
113000469 CTGATTTAGCTTCGGGCCATGATATTGGCACTTCGGGTGTAAGCTACT
1 CTGATTTAGCTTCGGGCCATGATATTGGCACTTCGGGTGCGAGTTACT
* * * *
113000517 TTGATTTGGCTTCGGGCCATGATATTGGCACTTTGAGTGCGAGATTTA-T
1 CTGATTTAGCTTCGGGCCATGATATTGGCACTTCGGGTGCGAG--TTACT
* * * * *
113000566 -TGAGTTAGCTTTGGGCCATGATATTGGAACTTAGTGTGCGAG
1 CTGATTTAGCTTCGGGCCATGATATTGGCACTTCGGGTGCGAG
113000608 AATCCTGAGT
Statistics
Matches: 118, Mismatches: 19, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
48 115 0.97
49 1 0.01
50 2 0.02
ACGTcount: A:0.19, C:0.18, G:0.29, T:0.34
Consensus pattern (48 bp):
CTGATTTAGCTTCGGGCCATGATATTGGCACTTCGGGTGCGAGTTACT
Found at i:113000586 original size:96 final size:96
Alignment explanation
Indices: 113000422--113000597 Score: 257
Period size: 96 Copynumber: 1.8 Consensus size: 96
113000412 AAGGATACAC
* *
113000422 TGATTTGGCTTCGGGCCATGATATCAGCACTTCGGGTGCGAGTTACTCTGATTTAGCTTCGGGCC
1 TGATTTGGCTTCGGGCCATGATATCAGCACTTCGAGTGCGAGTTACTCTGAGTTAGCTTCGGGCC
*
113000487 ATGATATTGGCACTTCGGGTGTAAGCTACTT
66 ATGATATTGGAACTTCGGGTGTAAGCTACTT
** * *
113000518 TGATTTGGCTTCGGGCCATGATATTGGCACTTTGAGTGCGAGATTTA-T-TGAGTTAGCTTTGGG
1 TGATTTGGCTTCGGGCCATGATATCAGCACTTCGAGTGCGAG--TTACTCTGAGTTAGCTTCGGG
113000581 CCATGATATTGGAACTT
64 CCATGATATTGGAACTT
113000598 AGTGTGCGAG
Statistics
Matches: 71, Mismatches: 7, Indels: 4
0.87 0.09 0.05
Matches are distributed among these distances:
96 67 0.94
97 1 0.01
98 3 0.04
ACGTcount: A:0.19, C:0.18, G:0.28, T:0.35
Consensus pattern (96 bp):
TGATTTGGCTTCGGGCCATGATATCAGCACTTCGAGTGCGAGTTACTCTGAGTTAGCTTCGGGCC
ATGATATTGGAACTTCGGGTGTAAGCTACTT
Found at i:113006081 original size:54 final size:54
Alignment explanation
Indices: 113005976--113006082 Score: 133
Period size: 54 Copynumber: 2.0 Consensus size: 54
113005966 CCGATAATAA
* ** * **
113005976 CAAGACAGAATTTCGACCAAGTGTTAACACAAACGCTCTAGTCAACGAAACCAG
1 CAAGACAGAATTTCGAACAAGTGTTAACACAAAAACTCTAGTAAAAAAAACCAG
* * *
113006030 CAAGATAGAATTTCGAATAGGTGTTAACACAAAAACTCTAGTAAAAAAAACCA
1 CAAGACAGAATTTCGAACAAGTGTTAACACAAAAACTCTAGTAAAAAAAACCA
113006083 ACACTTAATA
Statistics
Matches: 44, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
54 44 1.00
ACGTcount: A:0.46, C:0.21, G:0.15, T:0.19
Consensus pattern (54 bp):
CAAGACAGAATTTCGAACAAGTGTTAACACAAAAACTCTAGTAAAAAAAACCAG
Found at i:113014268 original size:15 final size:15
Alignment explanation
Indices: 113014235--113014268 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
113014225 ATGTATAATA
*
113014235 ATACTAAATATATAC
1 ATACTAAATACATAC
*
113014250 ATACTAAATACATAT
1 ATACTAAATACATAC
113014265 ATAC
1 ATAC
113014269 ATAGTATAAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.53, C:0.15, G:0.00, T:0.32
Consensus pattern (15 bp):
ATACTAAATACATAC
Found at i:113014278 original size:21 final size:20
Alignment explanation
Indices: 113014229--113014288 Score: 52
Period size: 19 Copynumber: 2.9 Consensus size: 20
113014219 ATACATATGT
113014229 ATAATAATACTAA-ATATATAC
1 ATAATAA-A-TAACATATATAC
*
113014250 ATACTAAAT-ACATATATAC
1 ATAATAAATAACATATATAC
113014269 ATAGTATAAATGAACATATA
1 ATA--ATAAAT-AACATATA
113014289 CAATGTCTAT
Statistics
Matches: 32, Mismatches: 2, Indels: 8
0.76 0.05 0.19
Matches are distributed among these distances:
18 1 0.03
19 12 0.38
20 1 0.03
21 11 0.34
23 7 0.22
ACGTcount: A:0.55, C:0.10, G:0.03, T:0.32
Consensus pattern (20 bp):
ATAATAAATAACATATATAC
Found at i:113014458 original size:16 final size:15
Alignment explanation
Indices: 113014427--113014460 Score: 50
Period size: 16 Copynumber: 2.2 Consensus size: 15
113014417 AATATCAAGT
*
113014427 ATATTAATGAATATA
1 ATATTAATGAAAATA
113014442 ATATTATATGAAAATA
1 ATATTA-ATGAAAATA
113014458 ATA
1 ATA
113014461 CTAAATAAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 6 0.35
16 11 0.65
ACGTcount: A:0.56, C:0.00, G:0.06, T:0.38
Consensus pattern (15 bp):
ATATTAATGAAAATA
Found at i:113021642 original size:47 final size:47
Alignment explanation
Indices: 113021583--113021929 Score: 532
Period size: 47 Copynumber: 7.4 Consensus size: 47
113021573 GATGTACAAG
* *
113021583 GTGTGTATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
1 GTGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAA
*
113021630 GTGTATATATGTGATAAGGCCAAATGGCCAATGTGATGAATGTGAAA
1 GTGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAA
* *
113021677 GTGTGTATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
1 GTGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAA
*
113021724 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
1 GTGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAA
* * *
113021771 GTGTATATATGTGATAAGGCCGAGTGGCCAACGTGATGAATGTGAAA
1 GTGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAA
* * * * *
113021818 GTGTATATATGAGATAAGACCTAATGGCCGATGTGATGGATGTGAAG
1 GTGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAA
* * *
113021865 GTGTATATATGTGATAAGGCCAAATGGCCAACGTGATGGATGTGAAA
1 GTGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAA
*
113021912 GTGTATAAATGTGATAAG
1 GTGTATATATGTGATAAG
113021930 TCCCGAAGGG
Statistics
Matches: 274, Mismatches: 26, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
47 274 1.00
ACGTcount: A:0.33, C:0.09, G:0.31, T:0.28
Consensus pattern (47 bp):
GTGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAA
Found at i:113021666 original size:22 final size:22
Alignment explanation
Indices: 113021638--113021760 Score: 59
Period size: 22 Copynumber: 5.3 Consensus size: 22
113021628 AAGTGTATAT
113021638 ATGTGATAAGGCCAAATGGCCA
1 ATGTGATAAGGCCAAATGGCCA
* ** *
113021660 ATGTGATGAATGTGAAAGTGTG-TA
1 ATGTGAT-AAGGCCAAA-TG-GCCA
* *
113021684 TATGTGATAAGGCCTAATGGCCG
1 -ATGTGATAAGGCCAAATGGCCA
* ** ***
113021707 ATGTGATGAATGTGAAAGTGTATA
1 ATGTGAT-AAGGCCAAA-TGGCCA
*
113021731 TATGTGATAAGGCCGAATGGCCA
1 -ATGTGATAAGGCCAAATGGCCA
113021754 ATGTGAT
1 ATGTGAT
113021761 GAATGTGAAA
Statistics
Matches: 68, Mismatches: 25, Indels: 16
0.62 0.23 0.15
Matches are distributed among these distances:
22 22 0.32
23 16 0.24
24 15 0.22
25 15 0.22
ACGTcount: A:0.33, C:0.10, G:0.30, T:0.28
Consensus pattern (22 bp):
ATGTGATAAGGCCAAATGGCCA
Found at i:113024018 original size:179 final size:176
Alignment explanation
Indices: 113023789--113024390 Score: 764
Period size: 179 Copynumber: 3.4 Consensus size: 176
113023779 AACAGACATT
* ** *
113023789 AAAACAGAAACTGAAAATAGCTCAGCACATGAGCCAAGGCTCAACTCACCTCTCGCAATATGAGT
1 AAAACAGAAACTGAAAATACCTCAGCATGTGAGCCGAGGCTCAACTCACCTCTCGCAATATGAGT
* * *
113023854 TGATTTTTGAAAACAAAATTTGAAAAACAGATTTTGAAAATGCCTCGACATGTGACCCAAGGCTC
66 TGATTTTTGAAAACAAAA-TTGAAAAGCAGATTTTGAAAATACCTCGACATGTGACCCGAGGCTC
* *
113023919 AACTCACCTATCATCATATGAGTTGATTTTTGAAAAATATAAATTGAGA
130 AACTCACCTCTC-GCATATGAGTTGATTTTTGAAAAATATAAATTGA-A
* ** *
113023968 AAAACAGAAATTGAGGATACCTCAGCATGTGAGCCGAGGCTCAACTCACCTCTCGCAATATAAGT
1 AAAACAGAAACTGAAAATACCTCAGCATGTGAGCCGAGGCTCAACTCACCTCTCGCAATATGAGT
*
113024033 TGATTTTTG-AAAC----TT-AAAAGCAGATTTTGAAAATACCTCGACATGTGACCTGAGGCTCA
66 TGATTTTTGAAAACAAAATTGAAAAGCAGATTTTGAAAATACCTCGACATGTGACCCGAGGCTCA
113024092 ACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAATATAAATTGAA
131 ACTCACCTCTCGC-ATATGAGTTGATTTTTGAAAAATATAAATTGAA
113024139 AAAACAGAAACTGAAAATACCTCAGCATGTGAGCCGAGGCTCAACTCACCTCTCGCAATATGAGT
1 AAAACAGAAACTGAAAATACCTCAGCATGTGAGCCGAGGCTCAACTCACCTCTCGCAATATGAGT
* * *
113024204 TGATTTTTTTGACAAGCAGAAATTGAAAAGCAGGA-ATTGAAAATTCCTC-AGC--GTG-CCCTG
66 TGA--TTTTTGA-AAACA-AAATTGAAAAGCA-GATTTTGAAAATACCTCGA-CATGTGACCC-G
* *
113024264 AGGCTCAACTCACTTCTCGCAGTATGAGTTGATTTTTTTGAAAAATATAGATTGAA
124 AGGCTCAACTCACCTCTCGCA-TATGAGTTGA--TTTTTGAAAAATATAAATTGAA
* * * *
113024320 AAAACAGGAATTGAAAATAGCTCAGC--GTG-TCCTGAGGCTCAACTCACCTCTCGCAATATGAG
1 AAAACAGAAACTGAAAATACCTCAGCATGTGAGCC-GAGGCTCAACTCACCTCTCGCAATATGAG
113024382 TTGATTTTT
65 TTGATTTTT
113024391 TTTTGAAAAG
Statistics
Matches: 377, Mismatches: 28, Indels: 38
0.85 0.06 0.09
Matches are distributed among these distances:
171 66 0.18
172 82 0.22
173 8 0.02
175 3 0.01
177 5 0.01
178 9 0.02
179 135 0.36
180 3 0.01
181 64 0.17
182 2 0.01
ACGTcount: A:0.36, C:0.19, G:0.18, T:0.27
Consensus pattern (176 bp):
AAAACAGAAACTGAAAATACCTCAGCATGTGAGCCGAGGCTCAACTCACCTCTCGCAATATGAGT
TGATTTTTGAAAACAAAATTGAAAAGCAGATTTTGAAAATACCTCGACATGTGACCCGAGGCTCA
ACTCACCTCTCGCATATGAGTTGATTTTTGAAAAATATAAATTGAA
Found at i:113024119 original size:81 final size:84
Alignment explanation
Indices: 113023789--113024390 Score: 447
Period size: 90 Copynumber: 6.9 Consensus size: 84
113023779 AACAGACATT
* ** *
113023789 AAAACAGAAACTGAAAATAGCTCAGCACATGAGCCAAGGCTCAACTCACCTCTCGCAATATGAGT
1 AAAACAGAAACTGAAAATACCTCAGCATGTGAGCCGAGGCTCAACTCACCTCTCGCAATATGAGT
* *
113023854 TGATTTTTGAAAACAAAATTTGA
66 TGATTTTTG--AA-TAAA-TTAA
*** * * * * *
113023877 AAAACAGATTTTGAAAATGCCTC-GACATGTGACCCAAGGCTCAACTCACCTATCATC-ATATGA
1 AAAACAGAAACTGAAAATACCTCAG-CATGTGAGCCGAGGCTCAACTCACCTCTC-GCAATATGA
113023940 GTTGATTTTTGAAAAATATAAATTGAGA
64 GTTGATTTTTG----A-ATAAATT-A-A
* ** *
113023968 AAAACAGAAATTGAGGATACCTCAGCATGTGAGCCGAGGCTCAACTCACCTCTCGCAATATAAGT
1 AAAACAGAAACTGAAAATACCTCAGCATGTGAGCCGAGGCTCAACTCACCTCTCGCAATATGAGT
*
113024033 TGATTTTTG-A-AACTT-A
66 TGATTTTTGAATAAATTAA
* ***
113024049 AAAGCAGATTTTGAAAATACCTC-GACATGTGA-CCTGAGGCTCAACTCACCTCTCGCAATATGA
1 AAAACAGAAACTGAAAATACCTCAG-CATGTGAGCC-GAGGCTCAACTCACCTCTCGCAATATGA
113024112 GTTGATTTTTGAAAAATATAAATTGAA
64 GTTGATTTTTG----A-ATAAATT-AA
113024139 AAAACAGAAACTGAAAATACCTCAGCATGTGAGCCGAGGCTCAACTCACCTCTCGCAATATGAGT
1 AAAACAGAAACTGAAAATACCTCAGCATGTGAGCCGAGGCTCAACTCACCTCTCGCAATATGAGT
* *
113024204 TGATTTTTTTGACAAGCAGAAATTGA
66 TGA--TTTTTG---A--ATAAATTAA
* * * * * * *
113024230 AAAGCAGGAATTGAAAATTCCTCAGC--GTG-CCCTGAGGCTCAACTCACTTCTCGCAGTATGAG
1 AAAACAGAAACTGAAAATACCTCAGCATGTGAGCC-GAGGCTCAACTCACCTCTCGCAATATGAG
113024292 TTGATTTTTTTGAAAAATATAGATTGAA
65 TTGA--TTTTTG---AATA-A-ATT-AA
* * * *
113024320 AAAACAGGAATTGAAAATAGCTCAGC--GTG-TCCTGAGGCTCAACTCACCTCTCGCAATATGAG
1 AAAACAGAAACTGAAAATACCTCAGCATGTGAGCC-GAGGCTCAACTCACCTCTCGCAATATGAG
113024382 TTGATTTTT
65 TTGATTTTT
113024391 TTTTGAAAAG
Statistics
Matches: 431, Mismatches: 54, Indels: 58
0.79 0.10 0.11
Matches are distributed among these distances:
80 3 0.01
81 64 0.15
84 4 0.01
85 1 0.00
87 4 0.01
88 72 0.17
89 51 0.12
90 128 0.30
91 91 0.21
92 13 0.03
ACGTcount: A:0.36, C:0.19, G:0.18, T:0.27
Consensus pattern (84 bp):
AAAACAGAAACTGAAAATACCTCAGCATGTGAGCCGAGGCTCAACTCACCTCTCGCAATATGAGT
TGATTTTTGAATAAATTAA
Found at i:113024234 original size:14 final size:14
Alignment explanation
Indices: 113024212--113024246 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 14
113024202 GTTGATTTTT
*
113024212 TTGACAAGCAGAAA
1 TTGAAAAGCAGAAA
*
113024226 TTGAAAAGCAGGAA
1 TTGAAAAGCAGAAA
113024240 TTGAAAA
1 TTGAAAA
113024247 TTCCTCAGCG
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.51, C:0.09, G:0.23, T:0.17
Consensus pattern (14 bp):
TTGAAAAGCAGAAA
Found at i:113024360 original size:350 final size:344
Alignment explanation
Indices: 113023723--113024390 Score: 854
Period size: 350 Copynumber: 1.9 Consensus size: 344
113023713 TTGTTCTTTA
** *
113023723 CTCGACATGTGATCCTGAGCTCAACTCATTTCTCGCAATATGAATTGACTCTTTAAAACAGACAT
1 CTCGACATGTGATCCTGAGCTCAACTCACCTCTCGCAATATGAATTGACTCTTTAAAACAGAAAT
*
113023788 TAAAACAGAAACTGAAAATAGCTCAGCACATGAGCCAAGGCTCAACTCACCTCTCGCAATATGAG
66 TAAAACAGAAACTGAAAATACCTCAGCACATGAGCCAAGGCTCAACTCACCTCTCGCAATATGAG
*
113023853 TTGATTTTTGAAAACAAAATTTGAAAAACAGATTTTGAAAATGCCTCGACATGTGACCCAAGGCT
131 TTGATTTTTGAAAACAAAATTTGAAAAACAGATATTGAAAATGCCTCGACA-GTGACCCAAGGCT
* *
113023918 CAACTCACCTATCATCATATGAGTTGATTTTTGAAAAATATAAATTGAGAAAAACAGAAATTGAG
195 CAACTCACCTATCAGCATATGAGTTGATTTTTGAAAAATATAAATTGAGAAAAACAGAAATTGAA
*
113023983 GATACCTCAGCATGTGAGCCGAGGCTCAACTCACCTCTCGCAATATAAGTTGATTTTTGAAACTT
260 AATACCTCAGCA-GTGAGCCGAGGCTCAACTCACCTCTCGCAATATAAGTTGATTTTTGAAACTT
113024048 AAAAGCAGATTTTGAAAATAC
324 AAAAGCAGATTTTGAAAATAC
* * * *
113024069 CTCGACATGTGA-CCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTGAAAAATATA
1 CTCGACATGTGATCCTGA-GCTCAACTCACCTCTCGCAATATGAATTGACTCTTT--AAAACAGA
** *
113024132 AATTGAAAAAACAGAAACTGAAAATACCTCAGCATGTGAGCCGAGGCTCAACTCACCTCTCGCAA
63 AATT---AAAACAGAAACTGAAAATACCTCAGCACATGAGCCAAGGCTCAACTCACCTCTCGCAA
* * *
113024197 TATGAGTTGATTTTTTTGACAAGCAGAAA-TTGAAAAGCAGGA-ATTGAAAATTCCTC-AGC-GT
125 TATGAGTTGA--TTTTTGA-AAACA-AAATTTGAAAAACA-GATATTGAAAATGCCTCGA-CAGT
* * * *
113024258 G-CCCTGAGGCTCAACTCACTTCTC-GCAGTATGAGTTGATTTTTTTGAAAAATATAGATTGA-A
184 GACCC-AAGGCTCAACTCACCTATCAGCA-TATGAGTTGA--TTTTTGAAAAATATAAATTGAGA
* * * *
113024320 AAAACAGGAATTGAAAATAGCTCAGC-GTG-TCCTGAGGCTCAACTCACCTCTCGCAATATGAGT
245 AAAACAGAAATTGAAAATACCTCAGCAGTGAGCC-GAGGCTCAACTCACCTCTCGCAATATAAGT
113024383 TGATTTTT
309 TGATTTTT
113024391 TTTTGAAAAG
Statistics
Matches: 279, Mismatches: 26, Indels: 30
0.83 0.08 0.09
Matches are distributed among these distances:
345 9 0.03
346 39 0.14
347 9 0.03
349 2 0.01
350 109 0.39
351 29 0.10
352 31 0.11
353 46 0.16
354 5 0.02
ACGTcount: A:0.35, C:0.20, G:0.17, T:0.27
Consensus pattern (344 bp):
CTCGACATGTGATCCTGAGCTCAACTCACCTCTCGCAATATGAATTGACTCTTTAAAACAGAAAT
TAAAACAGAAACTGAAAATACCTCAGCACATGAGCCAAGGCTCAACTCACCTCTCGCAATATGAG
TTGATTTTTGAAAACAAAATTTGAAAAACAGATATTGAAAATGCCTCGACAGTGACCCAAGGCTC
AACTCACCTATCAGCATATGAGTTGATTTTTGAAAAATATAAATTGAGAAAAACAGAAATTGAAA
ATACCTCAGCAGTGAGCCGAGGCTCAACTCACCTCTCGCAATATAAGTTGATTTTTGAAACTTAA
AAGCAGATTTTGAAAATAC
Found at i:113024391 original size:179 final size:184
Alignment explanation
Indices: 113024081--113024495 Score: 576
Period size: 195 Copynumber: 2.2 Consensus size: 184
113024071 CGACATGTGA
*
113024081 CCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA--TTTTTGAAAAATATAAATTGAAAAAAC
1 CCTGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTTTGAAAAATATAAATTGAAAAAAC
113024144 AGAAACTGAAAATACCTCAGCATGTGAGCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-T
66 AGAAACTGAAAATACCTCAGCA-GTGAGCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATT
*
113024208 TTTTTTG-A-C-AAGCAGAAATTGAAAAGCAGGAATTGAAAATTCCTCAGCGTGC
130 TTTTTTGAAGCAAAGCAAAAATTGAAAAGCAGGAATTGAAAATTCCTCAGCGTGC
* *
113024260 CCTGAGGCTCAACTCACTTCTCGCAGTATGAGTTGATTTTTTTGAAAAATATAGATTGAAAAAAC
1 CCTGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTTTGAAAAATATAAATTGAAAAAAC
* * * *
113024325 AGGAATTGAAAATAGCTCAGC-GTG-TCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATT
66 AGAAACTGAAAATACCTCAGCAGTGAGCC-GAGGCTCAACTCACCTCTCGCAATATGAGTTGA-T
113024388 TTTTTTTGAAAAGCGGAAATTAAAAAGCAAAAATTGAAAAGCAGGAATTGAAAATTCCTCAGCGT
129 TTTTTTTG--AAGC---------AAAGCAAAAATTGAAAAGCAGGAATTGAAAATTCCTCAGCGT
113024453 GC
183 GC
113024455 CCTGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTT
1 CCTGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTT
113024496 GAAACATAAA
Statistics
Matches: 208, Mismatches: 9, Indels: 22
0.87 0.04 0.09
Matches are distributed among these distances:
178 2 0.01
179 70 0.34
181 52 0.25
184 1 0.00
185 1 0.00
195 82 0.39
ACGTcount: A:0.34, C:0.19, G:0.19, T:0.28
Consensus pattern (184 bp):
CCTGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTTTGAAAAATATAAATTGAAAAAAC
AGAAACTGAAAATACCTCAGCAGTGAGCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTT
TTTTTGAAGCAAAGCAAAAATTGAAAAGCAGGAATTGAAAATTCCTCAGCGTGC
Found at i:113024413 original size:90 final size:89
Alignment explanation
Indices: 113024059--113024427 Score: 415
Period size: 90 Copynumber: 4.1 Consensus size: 89
113024049 AAAGCAGATT
*
113024059 TTGAAAATACCTC-GACATGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA--TTTT
1 TTGAAAATACCTCAG-C--GTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTT
* *
113024121 TGAAAAATATAAATTGAAAAAACAGAAA
63 TGAAAAACAGAAATTG-AAAAACAGAAA
* *
113024149 CTGAAAATACCTCAGCATGTGAGCC-GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTT
1 TTGAAAATACCTCAGC--GTG-CCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTT
* * * *
113024213 TGACAAGCAGAAATTGAAAAGCAGGAA
63 TGAAAAACAGAAATTGAAAAACAGAAA
* * *
113024240 TTGAAAATTCCTCAGCGTGCCCTGAGGCTCAACTCACTTCTCGCAGTATGAGTTGATTTTTTTGA
1 TTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGA
* * * *
113024305 AAAATATAGATTGAAAAAACAGGAA
66 AAAACAGAAATTG-AAAAACAGAAA
* *
113024330 TTGAAAATAGCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTT
1 TTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA--TTTTTTT
* * *
113024395 GAAAAGCGGAAATT-AAAAAGCAAAAA
64 GAAAAACAGAAATTGAAAAA-CAGAAA
113024421 TTGAAAA
1 TTGAAAA
113024428 GCAGGAATTG
Statistics
Matches: 239, Mismatches: 31, Indels: 17
0.83 0.11 0.06
Matches are distributed among these distances:
88 2 0.01
89 51 0.21
90 117 0.49
91 37 0.15
92 32 0.13
ACGTcount: A:0.36, C:0.18, G:0.18, T:0.27
Consensus pattern (89 bp):
TTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGA
AAAACAGAAATTGAAAAACAGAAA
Found at i:113024436 original size:14 final size:14
Alignment explanation
Indices: 113024393--113024441 Score: 55
Period size: 14 Copynumber: 3.5 Consensus size: 14
113024383 TGATTTTTTT
113024393 TTGAAAAGC-GGAAA
1 TTGAAAAGCAGG-AA
* **
113024407 TTAAAAAGCAAAAA
1 TTGAAAAGCAGGAA
113024421 TTGAAAAGCAGGAA
1 TTGAAAAGCAGGAA
113024435 TTGAAAA
1 TTGAAAA
113024442 TTCCTCAGCG
Statistics
Matches: 28, Mismatches: 6, Indels: 2
0.78 0.17 0.06
Matches are distributed among these distances:
14 28 1.00
ACGTcount: A:0.57, C:0.06, G:0.20, T:0.16
Consensus pattern (14 bp):
TTGAAAAGCAGGAA
Found at i:113024549 original size:71 final size:71
Alignment explanation
Indices: 113024433--113024570 Score: 213
Period size: 71 Copynumber: 1.9 Consensus size: 71
113024423 GAAAAGCAGG
* * * *
113024433 AATTGAAAATTCCTCAGCGTGCCCTGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTGA
1 AATTGAAAATACCTCAACGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTCTGA
113024498 AACATA
66 AACATA
* * *
113024504 AATTGAAAATACCTCAACGTGTCTTGTGGCTCAACTCACCTCTCGCAATATGAGTTGATTTCTGA
1 AATTGAAAATACCTCAACGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTCTGA
113024569 AA
66 AA
113024571 ACAGAAATAA
Statistics
Matches: 60, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
71 60 1.00
ACGTcount: A:0.30, C:0.22, G:0.17, T:0.31
Consensus pattern (71 bp):
AATTGAAAATACCTCAACGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTCTGA
AACATA
Found at i:113032897 original size:4 final size:4
Alignment explanation
Indices: 113032888--113032919 Score: 64
Period size: 4 Copynumber: 8.0 Consensus size: 4
113032878 TGGGATATGC
113032888 AATG AATG AATG AATG AATG AATG AATG AATG
1 AATG AATG AATG AATG AATG AATG AATG AATG
113032920 CATAAATGTC
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.25, T:0.25
Consensus pattern (4 bp):
AATG
Found at i:113035502 original size:22 final size:24
Alignment explanation
Indices: 113035437--113035512 Score: 66
Period size: 22 Copynumber: 3.2 Consensus size: 24
113035427 TAAAATACAT
* *
113035437 ACATAATATAGTGTTTAAGACATAC
1 ACATAATATAGT-ATTAAAACATAC
* **
113035462 ACATAAGATAGTACAAAAACATA-
1 ACATAATATAGTATTAAAACATAC
* *
113035485 AC-TAATATAGTATTAAAATATAT
1 ACATAATATAGTATTAAAACATAC
113035508 ACATA
1 ACATA
113035513 TAACATAGTA
Statistics
Matches: 40, Mismatches: 9, Indels: 5
0.74 0.17 0.09
Matches are distributed among these distances:
22 16 0.40
23 4 0.10
24 9 0.22
25 11 0.28
ACGTcount: A:0.53, C:0.11, G:0.08, T:0.29
Consensus pattern (24 bp):
ACATAATATAGTATTAAAACATAC
Found at i:113035919 original size:25 final size:22
Alignment explanation
Indices: 113035864--113035909 Score: 85
Period size: 21 Copynumber: 2.1 Consensus size: 22
113035854 TAACATGAGT
113035864 ACTAATAATGTTAAAAAAAACA
1 ACTAATAATGTTAAAAAAAACA
113035886 ACTAATAATGTT-AAAAAAACA
1 ACTAATAATGTTAAAAAAAACA
113035907 ACT
1 ACT
113035910 TATTAATAAT
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
21 12 0.50
22 12 0.50
ACGTcount: A:0.61, C:0.11, G:0.04, T:0.24
Consensus pattern (22 bp):
ACTAATAATGTTAAAAAAAACA
Found at i:113036066 original size:21 final size:21
Alignment explanation
Indices: 113036042--113036084 Score: 52
Period size: 21 Copynumber: 2.0 Consensus size: 21
113036032 AATAAAAATG
*
113036042 ATAATCATGAG-AATAATATAA
1 ATAAT-ATGAGAAATAAAATAA
*
113036063 ATAATATTAGAAATAAAATAA
1 ATAATATGAGAAATAAAATAA
113036084 A
1 A
113036085 ATAGCAAGGA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
20 4 0.21
21 15 0.79
ACGTcount: A:0.63, C:0.02, G:0.07, T:0.28
Consensus pattern (21 bp):
ATAATATGAGAAATAAAATAA
Found at i:113038436 original size:38 final size:38
Alignment explanation
Indices: 113038385--113038501 Score: 193
Period size: 38 Copynumber: 3.1 Consensus size: 38
113038375 GTAAAAGAAG
113038385 AAATCCGGACTTAAAGTCCGCAGGCTATATGCTGGAAT
1 AAATCCGGACTTAAAGTCCGCAGGCTATATGCTGGAAT
*
113038423 AAATCCGGACTTAAAGTCTGCAGGCTATATGCTGGAAT
1 AAATCCGGACTTAAAGTCCGCAGGCTATATGCTGGAAT
*
113038461 AAATCTGGACTTAAAGTCCGCAGGCTA-AGTGCTGGAA-
1 AAATCCGGACTTAAAGTCCGCAGGCTATA-TGCTGGAAT
113038498 AAAT
1 AAAT
113038502 ATCCGAGTTA
Statistics
Matches: 75, Mismatches: 3, Indels: 3
0.93 0.04 0.04
Matches are distributed among these distances:
37 5 0.07
38 70 0.93
ACGTcount: A:0.33, C:0.19, G:0.24, T:0.24
Consensus pattern (38 bp):
AAATCCGGACTTAAAGTCCGCAGGCTATATGCTGGAAT
Found at i:113038531 original size:76 final size:76
Alignment explanation
Indices: 113038385--113038531 Score: 183
Period size: 76 Copynumber: 1.9 Consensus size: 76
113038375 GTAAAAGAAG
* * *
113038385 AAATCCGGACTTAAAGTCCGCAGGCTATATGCTGGAATAAATCCGGACTTAAAGTCTGCAGGCTA
1 AAATCCGGACTTAAAGTCCGCAGGCTATATGCTGGAAAAAATCCGGACTTAAAGCCCGCAGGCTA
*
113038450 TATGCTGGAAT
66 CATGCTGGAAT
* * *
113038461 AAATCTGGACTTAAAGTCCGCAGGCTA-AGTGCTGGAAAAATATCC-GAGTTAAGGACCCGCAGG
1 AAATCCGGACTTAAAGTCCGCAGGCTATA-TGCTGGAAAAA-ATCCGGACTTAAAG-CCCGCAGG
113038524 CT-CATGCT
63 CTACATGCT
113038532 AGTAATGTAT
Statistics
Matches: 61, Mismatches: 7, Indels: 6
0.82 0.09 0.08
Matches are distributed among these distances:
75 1 0.02
76 48 0.79
77 12 0.20
ACGTcount: A:0.31, C:0.21, G:0.24, T:0.23
Consensus pattern (76 bp):
AAATCCGGACTTAAAGTCCGCAGGCTATATGCTGGAAAAAATCCGGACTTAAAGCCCGCAGGCTA
CATGCTGGAAT
Found at i:113044532 original size:23 final size:20
Alignment explanation
Indices: 113044502--113044547 Score: 56
Period size: 23 Copynumber: 2.1 Consensus size: 20
113044492 TTAAATATGT
113044502 ATGTATGTATATGTATAGTATAC
1 ATGTATGTATA--TATA-TATAC
*
113044525 ATGTATGTCTATATATATAC
1 ATGTATGTATATATATATAC
113044545 ATG
1 ATG
113044548 AGTGATACCC
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
20 8 0.36
21 4 0.18
23 10 0.45
ACGTcount: A:0.35, C:0.07, G:0.15, T:0.43
Consensus pattern (20 bp):
ATGTATGTATATATATATAC
Found at i:113045960 original size:19 final size:20
Alignment explanation
Indices: 113045921--113045960 Score: 55
Period size: 19 Copynumber: 2.0 Consensus size: 20
113045911 TTTTAATGGT
* *
113045921 ACAAATAAATAAAATATTTA
1 ACAAATAAATAAAAAAATTA
113045941 ACAAA-AAATAAAAAAATTA
1 ACAAATAAATAAAAAAATTA
113045960 A
1 A
113045961 TGTACTCTTT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
19 13 0.72
20 5 0.28
ACGTcount: A:0.72, C:0.05, G:0.00, T:0.23
Consensus pattern (20 bp):
ACAAATAAATAAAAAAATTA
Found at i:113050942 original size:21 final size:20
Alignment explanation
Indices: 113050900--113050944 Score: 54
Period size: 21 Copynumber: 2.2 Consensus size: 20
113050890 ACTTTGACCC
* *
113050900 TAAACCCAAAATTTTAAACT
1 TAAACCCAAAACTTGAAACT
*
113050920 TAAACCCTAAAACTTGAACCT
1 TAAACCC-AAAACTTGAAACT
113050941 TAAA
1 TAAA
113050945 TGGTTAGGAT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
20 7 0.33
21 14 0.67
ACGTcount: A:0.49, C:0.22, G:0.02, T:0.27
Consensus pattern (20 bp):
TAAACCCAAAACTTGAAACT
Found at i:113054549 original size:23 final size:23
Alignment explanation
Indices: 113054523--113054607 Score: 64
Period size: 23 Copynumber: 3.6 Consensus size: 23
113054513 ACAAAAAAAG
113054523 AAAATATAATAATAATAATAGTA
1 AAAATATAATAATAATAATAGTA
* * * *
113054546 AAAACACAATAGTAATAATAATGA
1 AAAATATAATAATAATAATAGT-A
* *
113054570 AAAGGTATTATAAT-ATAATAGTA
1 AAA-ATATAATAATAATAATAGTA
* *
113054593 ATAATGATGATAATA
1 AAAAT-ATAATAATA
113054608 GTGGTATTAG
Statistics
Matches: 45, Mismatches: 13, Indels: 7
0.69 0.20 0.11
Matches are distributed among these distances:
22 1 0.02
23 28 0.62
24 11 0.24
25 5 0.11
ACGTcount: A:0.59, C:0.02, G:0.09, T:0.29
Consensus pattern (23 bp):
AAAATATAATAATAATAATAGTA
Found at i:113054595 original size:33 final size:38
Alignment explanation
Indices: 113054553--113054634 Score: 102
Period size: 33 Copynumber: 2.3 Consensus size: 38
113054543 GTAAAAACAC
113054553 AATAGTAATAATAATGA-AA-A-GGTATTA-TAAT-AT
1 AATAGTAATAATAATGATAATAGGGTATTAGTAATAAT
*
113054586 AATAGTAATAATGATGATAATAGTGGTATTAGTAATAAT
1 AATAGTAATAATAATGATAATAG-GGTATTAGTAATAAT
*
113054625 AATAATAATA
1 AATAGTAATA
113054635 GAAAATAATA
Statistics
Matches: 41, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
33 16 0.39
34 2 0.05
35 1 0.02
37 7 0.17
38 4 0.10
39 11 0.27
ACGTcount: A:0.52, C:0.00, G:0.13, T:0.34
Consensus pattern (38 bp):
AATAGTAATAATAATGATAATAGGGTATTAGTAATAAT
Found at i:113054643 original size:19 final size:18
Alignment explanation
Indices: 113054619--113054660 Score: 57
Period size: 19 Copynumber: 2.3 Consensus size: 18
113054609 TGGTATTAGT
*
113054619 AATAATAATAATAATAGAA
1 AATAATAACAATAATA-AA
*
113054638 AATAATAACAATATTAAA
1 AATAATAACAATAATAAA
113054656 AATAA
1 AATAA
113054661 CACTCTCTCC
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
18 7 0.33
19 14 0.67
ACGTcount: A:0.69, C:0.02, G:0.02, T:0.26
Consensus pattern (18 bp):
AATAATAACAATAATAAA
Found at i:113055914 original size:206 final size:206
Alignment explanation
Indices: 113055560--113056068 Score: 901
Period size: 206 Copynumber: 2.5 Consensus size: 206
113055550 CAAATCTGCT
* *
113055560 TCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAATCATCTTGGATCTTGCTTCGGTATAAAC
1 TCTTCGATTTGCTCCTTGTAAGCACAAGGATGCCAAATCATCTTGGATCTTGCTTCAGTATAAAC
* *
113055625 ATCTGAAGGCCAGATCTGCTATGTATCTGTTCTCCGTCGAAATGGAGATGCCAGACTTCGACTTA
66 ATCTGAAGGCCAGATCTGCTATGTATCTGCTCTCCGTCGAAATGGAGATGCCAGACTTCGACATA
* * *
113055690 TTCTCTGACAATACAGAGATGTCAAATCATCTTAGACTTGCTTTAGAGTAAGCACGTGAAAGGCA
131 TTCTCTGACAATACAGAGATGCCAAATCATCTTAGACTTGCTTTAGAGTAAGCACGCGAAAGCCA
113055755 AATCAGCTATA
196 AATCAGCTATA
*
113055766 TCTTCGATTTGCTCCTTGTAAGCACAACGATGCCAAATCATCTTGGATCTTGCTTCAGTATAAAC
1 TCTTCGATTTGCTCCTTGTAAGCACAAGGATGCCAAATCATCTTGGATCTTGCTTCAGTATAAAC
* *
113055831 ATCTGAAGGCCAGATCTGCTATGTATCTGCTCTCCGTCGAAATGGAGGTGCCAGACTTCGACATG
66 ATCTGAAGGCCAGATCTGCTATGTATCTGCTCTCCGTCGAAATGGAGATGCCAGACTTCGACATA
*
113055896 TTCTCTGACAATACAGAGATGCCAAATCATCTTAGACTTGCTTTAGCGTAAGCACGCGAAAGCCA
131 TTCTCTGACAATACAGAGATGCCAAATCATCTTAGACTTGCTTTAGAGTAAGCACGCGAAAGCCA
*
113055961 AATCAGCTATG
196 AATCAGCTATA
113055972 TCTTCGATTTGCTCCTTGTAAGCACAAGGATGCCAAATCATCTTGGATCTTGCTTCAGTATAAAC
1 TCTTCGATTTGCTCCTTGTAAGCACAAGGATGCCAAATCATCTTGGATCTTGCTTCAGTATAAAC
*
113056037 ATCTGAAGGTCAGATCTGCTATGTATCTGCTC
66 ATCTGAAGGCCAGATCTGCTATGTATCTGCTC
113056069 CTTCGACTTG
Statistics
Matches: 289, Mismatches: 14, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
206 289 1.00
ACGTcount: A:0.28, C:0.23, G:0.20, T:0.30
Consensus pattern (206 bp):
TCTTCGATTTGCTCCTTGTAAGCACAAGGATGCCAAATCATCTTGGATCTTGCTTCAGTATAAAC
ATCTGAAGGCCAGATCTGCTATGTATCTGCTCTCCGTCGAAATGGAGATGCCAGACTTCGACATA
TTCTCTGACAATACAGAGATGCCAAATCATCTTAGACTTGCTTTAGAGTAAGCACGCGAAAGCCA
AATCAGCTATA
Found at i:113056194 original size:183 final size:183
Alignment explanation
Indices: 113055886--113056251 Score: 696
Period size: 183 Copynumber: 2.0 Consensus size: 183
113055876 AGGTGCCAGA
113055886 CTTCGACATGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGACTTGCTTTAGCGTAAGCAC
1 CTTCGACATGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGACTTGCTTTAGCGTAAGCAC
113055951 GCGAAAGCCAAATCAGCTATGTCTTCGATTTGCTCCTTGTAAGCACAAGGATGCCAAATCATCTT
66 GCGAAAGCCAAATCAGCTATGTCTTCGATTTGCTCCTTGTAAGCACAAGGATGCCAAATCATCTT
*
113056016 GGATCTTGCTTCAGTATAAACATCTGAAGGTCAGATCTGCTATGTATCTGCTC
131 GGATCTTGCTTCAGTATAAACATCTGAAGGCCAGATCTGCTATGTATCTGCTC
* *
113056069 CTTCGACTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGACTTGTTTTAGCGTAAGCAC
1 CTTCGACATGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGACTTGCTTTAGCGTAAGCAC
*
113056134 GCGAAAGCCAAATCAGCTATGTCTTCGATTTGCTCCTTGTAAGTACAAGGATGCCAAATCATCTT
66 GCGAAAGCCAAATCAGCTATGTCTTCGATTTGCTCCTTGTAAGCACAAGGATGCCAAATCATCTT
113056199 GGATCTTGCTTCAGTATAAACATCTGAAGGCCAGATCTGCTATGTATCTGCTC
131 GGATCTTGCTTCAGTATAAACATCTGAAGGCCAGATCTGCTATGTATCTGCTC
113056252 ACCGTCGAAA
Statistics
Matches: 179, Mismatches: 4, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
183 179 1.00
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.31
Consensus pattern (183 bp):
CTTCGACATGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGACTTGCTTTAGCGTAAGCAC
GCGAAAGCCAAATCAGCTATGTCTTCGATTTGCTCCTTGTAAGCACAAGGATGCCAAATCATCTT
GGATCTTGCTTCAGTATAAACATCTGAAGGCCAGATCTGCTATGTATCTGCTC
Found at i:113056397 original size:389 final size:389
Alignment explanation
Indices: 113055680--113056457 Score: 1403
Period size: 389 Copynumber: 2.0 Consensus size: 389
113055670 AGATGCCAGA
*
113055680 CTTCGACTTATTCTCTGACAATACAGAGATGTCAAATCATCTTAGACTTGCTTTAGAGTAAGCAC
1 CTTCGACTTATTCTCTGACAATACAGAGATGCCAAATCATCTTAGACTTGCTTTAGAGTAAGCAC
* *
113055745 GTGAAAGGCAAATCAGCTATATCTTCGATTTGCTCCTTGTAAGCACAACGATGCCAAATCATCTT
66 GCGAAAGCCAAATCAGCTATATCTTCGATTTGCTCCTTGTAAGCACAACGATGCCAAATCATCTT
*
113055810 GGATCTTGCTTCAGTATAAACATCTGAAGGCCAGATCTGCTATGTATCTGCTCTCCGTCGAAATG
131 GGATCTTGCTTCAGTATAAACATCTGAAGGCCAGATCTGCTATGTATCTGCTCACCGTCGAAATG
*
113055875 GAGGTGCCAGACTTCGACATGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGACTTGCTTT
196 GAGATGCCAGACTTCGACATGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGACTTGCTTT
113055940 AGCGTAAGCACGCGAAAGCCAAATCAGCTATGTCTTCGATTTGCTCCTTGTAAGCACAAGGATGC
261 AGCGTAAGCACGCGAAAGCCAAATCAGCTATGTCTTCGATTTGCTCCTTGTAAGCACAAGGATGC
*
113056005 CAAATCATCTTGGATCTTGCTTCAGTATAAACATCTGAAGGTCAGATCTGCTATGTATCTGCTC
326 CAAATCATCTTGGATCTTGCTTCAGTATAAACATCTGAAGGCCAGATCTGCTATGTATCTGCTC
* * *
113056069 CTTCGACTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGACTTGTTTTAGCGTAAGCAC
1 CTTCGACTTATTCTCTGACAATACAGAGATGCCAAATCATCTTAGACTTGCTTTAGAGTAAGCAC
* * *
113056134 GCGAAAGCCAAATCAGCTATGTCTTCGATTTGCTCCTTGTAAGTACAAGGATGCCAAATCATCTT
66 GCGAAAGCCAAATCAGCTATATCTTCGATTTGCTCCTTGTAAGCACAACGATGCCAAATCATCTT
113056199 GGATCTTGCTTCAGTATAAACATCTGAAGGCCAGATCTGCTATGTATCTGCTCACCGTCGAAATG
131 GGATCTTGCTTCAGTATAAACATCTGAAGGCCAGATCTGCTATGTATCTGCTCACCGTCGAAATG
* *
113056264 GAGATGCCAGACTTCGACTTGTTCTCTGACAATACAGATATGCCAAATCATCTTAGACTTGCTTT
196 GAGATGCCAGACTTCGACATGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGACTTGCTTT
* *
113056329 AGTGTAAGCACGCGAAAGCCAAATCAGCTATGTCTTCGATTTGCTCCTTGTAAGCACAATGATGC
261 AGCGTAAGCACGCGAAAGCCAAATCAGCTATGTCTTCGATTTGCTCCTTGTAAGCACAAGGATGC
*
113056394 CAAATCATTTTGGATCTTGCTTCAGTATAAACATCTGAAGGCCAGATCTGCTATGTATCTGCTC
326 CAAATCATCTTGGATCTTGCTTCAGTATAAACATCTGAAGGCCAGATCTGCTATGTATCTGCTC
113056458 TCCGTCGAAA
Statistics
Matches: 372, Mismatches: 17, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
389 372 1.00
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (389 bp):
CTTCGACTTATTCTCTGACAATACAGAGATGCCAAATCATCTTAGACTTGCTTTAGAGTAAGCAC
GCGAAAGCCAAATCAGCTATATCTTCGATTTGCTCCTTGTAAGCACAACGATGCCAAATCATCTT
GGATCTTGCTTCAGTATAAACATCTGAAGGCCAGATCTGCTATGTATCTGCTCACCGTCGAAATG
GAGATGCCAGACTTCGACATGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGACTTGCTTT
AGCGTAAGCACGCGAAAGCCAAATCAGCTATGTCTTCGATTTGCTCCTTGTAAGCACAAGGATGC
CAAATCATCTTGGATCTTGCTTCAGTATAAACATCTGAAGGCCAGATCTGCTATGTATCTGCTC
Found at i:113056423 original size:206 final size:206
Alignment explanation
Indices: 113056069--113056624 Score: 934
Period size: 206 Copynumber: 2.7 Consensus size: 206
113056059 GTATCTGCTC
*
113056069 CTTCGACTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGACTTGTTTTAGCGTAAGCAC
1 CTTCGACTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGACTTGCTTTAGCGTAAGCAC
* *
113056134 GCGAAAGCCAAATCAGCTATGTCTTCGATTTGCTCCTTGTAAGTACAAGGATGCCAAATCATCTT
66 GCGAAAGCCAAATCAGCTATGTCTTCGATTTGCTCCTTGTAAGCACAAGGATGCCAAATCATATT
113056199 GGATCTTGCTTCAGTATAAACATCTGAAGGCCAGATCTGCTATGTATCTGCTCACCGTCGAAATG
131 GGATCTTGCTTCAGTATAAACATCTGAAGGCCAGATCTGCTATGTATCTGCTCACCGTCGAAATG
113056264 GAGATGCCAGA
196 GAGATGCCAGA
* *
113056275 CTTCGACTTGTTCTCTGACAATACAGATATGCCAAATCATCTTAGACTTGCTTTAGTGTAAGCAC
1 CTTCGACTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGACTTGCTTTAGCGTAAGCAC
* *
113056340 GCGAAAGCCAAATCAGCTATGTCTTCGATTTGCTCCTTGTAAGCACAATGATGCCAAATCATTTT
66 GCGAAAGCCAAATCAGCTATGTCTTCGATTTGCTCCTTGTAAGCACAAGGATGCCAAATCATATT
*
113056405 GGATCTTGCTTCAGTATAAACATCTGAAGGCCAGATCTGCTATGTATCTGCTCTCCGTCGAAATG
131 GGATCTTGCTTCAGTATAAACATCTGAAGGCCAGATCTGCTATGTATCTGCTCACCGTCGAAATG
113056470 GAGATGCCAGA
196 GAGATGCCAGA
* *
113056481 CTTCGACTTGTTCTCTGACAATACAAAGATGCCAAATCTTCTTAGACTTGCTTTAGCGTAAGCAC
1 CTTCGACTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGACTTGCTTTAGCGTAAGCAC
* * * * *
113056546 GCGAAAGCCAAATCAGCTATGTCTTGGATCTGCTATGTCTTTGTAAGCATAAGGATGCCAAACCA
66 GCGAAAGCCAAATCAGCTATGTCTTCGATTTGC----TCCTTGTAAGCACAAGGATGCCAAATCA
113056611 TATTGGATC-TGCTT
127 TATTGGATCTTGCTT
113056625 TAGCCAGATC
Statistics
Matches: 328, Mismatches: 18, Indels: 5
0.93 0.05 0.01
Matches are distributed among these distances:
206 291 0.89
209 5 0.02
210 32 0.10
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (206 bp):
CTTCGACTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGACTTGCTTTAGCGTAAGCAC
GCGAAAGCCAAATCAGCTATGTCTTCGATTTGCTCCTTGTAAGCACAAGGATGCCAAATCATATT
GGATCTTGCTTCAGTATAAACATCTGAAGGCCAGATCTGCTATGTATCTGCTCACCGTCGAAATG
GAGATGCCAGA
Found at i:113063353 original size:12 final size:12
Alignment explanation
Indices: 113063338--113063362 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
113063328 CAATATTTTA
113063338 TATACATATTAT
1 TATACATATTAT
113063350 TATACATATTAT
1 TATACATATTAT
113063362 T
1 T
113063363 CTCATTGAGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.40, C:0.08, G:0.00, T:0.52
Consensus pattern (12 bp):
TATACATATTAT
Found at i:113070074 original size:86 final size:86
Alignment explanation
Indices: 113069929--113070278 Score: 547
Period size: 86 Copynumber: 4.1 Consensus size: 86
113069919 AGTAAAAATT
* * * * * *
113069929 GAAGATAAACCTTGCCTCTCTCGGTCGTAGCAGAGCTGGTTGAAGTTATCAGATCTTGCCTTCCT
1 GAAGACAAACCTTGCCACTCTCGTTTGTAGCAGAGCTGGTTGAAGATAGCAGATCTTGCCTTCCT
113069994 GCATTGACAGCGAAGCAGATC
66 GCATTGACAGCGAAGCAGATC
*
113070015 GAAGACAAACCTTGCCACTCTCGTTTGTAGTAGAGCTGGTTGAAGATAGCAGATCTTGCCTTCCT
1 GAAGACAAACCTTGCCACTCTCGTTTGTAGCAGAGCTGGTTGAAGATAGCAGATCTTGCCTTCCT
*
113070080 GTATTGACAGCGAAGCAGATC
66 GCATTGACAGCGAAGCAGATC
*
113070101 GAAGACAAACCTTGCCACTCTCGTTTGTAGTAGAGCTGGTTGAAGATAGCAGATCTTGCCTTCCT
1 GAAGACAAACCTTGCCACTCTCGTTTGTAGCAGAGCTGGTTGAAGATAGCAGATCTTGCCTTCCT
*
113070166 GCACTGACAGCGAAGCAGATC
66 GCATTGACAGCGAAGCAGATC
* * * *
113070187 GAAGACAAACCTTGCCTCTCTCGTTTGTAGCAGAGCTGGTTGAAGATATCAGATCTTGCTTTTCT
1 GAAGACAAACCTTGCCACTCTCGTTTGTAGCAGAGCTGGTTGAAGATAGCAGATCTTGCCTTCCT
* *
113070252 GTATTTGGCAGCGAAGCAGATC
66 GCA-TTGACAGCGAAGCAGATC
113070274 GAAGA
1 GAAGA
113070279 TGGCAGATTT
Statistics
Matches: 245, Mismatches: 18, Indels: 1
0.93 0.07 0.00
Matches are distributed among these distances:
86 224 0.91
87 21 0.09
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.27
Consensus pattern (86 bp):
GAAGACAAACCTTGCCACTCTCGTTTGTAGCAGAGCTGGTTGAAGATAGCAGATCTTGCCTTCCT
GCATTGACAGCGAAGCAGATC
Found at i:113070116 original size:42 final size:42
Alignment explanation
Indices: 113069983--113070203 Score: 107
Period size: 42 Copynumber: 5.2 Consensus size: 42
113069973 GTTATCAGAT
*
113069983 CTTGCCTTCCTGCATTGACAGCGAAGCAGATCGAAGACAAAC
1 CTTGCCTTCCTGTATTGACAGCGAAGCAGATCGAAGACAAAC
* * * * * * * *
113070025 CTTGCC-ACTCTCGT-TTG-TAG-TAGAGCTGGTTGAAGATAGCAGAT
1 CTTGCCTTC-CT-GTATTGACAGCGA-AGCAGATCGAAG--A-CAAAC
113070069 CTTGCCTTCCTGTATTGACAGCGAAGCAGATCGAAGACAAAC
1 CTTGCCTTCCTGTATTGACAGCGAAGCAGATCGAAGACAAAC
* * * * * * * *
113070111 CTTGCC-ACTCTCGT-TTG-TAG-TAGAGCTGGTTGAAGATAGCAGAT
1 CTTGCCTTC-CT-GTATTGACAGCGA-AGCAGATCGAAG--A-CAAAC
* *
113070155 CTTGCCTTCCTGCACTGACAGCGAAGCAGATCGAAGACAAAC
1 CTTGCCTTCCTGTATTGACAGCGAAGCAGATCGAAGACAAAC
113070197 CTTGCCT
1 CTTGCCT
113070204 CTCTCGTTTG
Statistics
Matches: 124, Mismatches: 35, Indels: 40
0.62 0.18 0.20
Matches are distributed among these distances:
40 2 0.02
41 24 0.19
42 35 0.28
43 10 0.08
44 27 0.22
45 24 0.19
46 2 0.02
ACGTcount: A:0.27, C:0.25, G:0.24, T:0.25
Consensus pattern (42 bp):
CTTGCCTTCCTGTATTGACAGCGAAGCAGATCGAAGACAAAC
Found at i:113070466 original size:134 final size:134
Alignment explanation
Indices: 113070226--113070635 Score: 732
Period size: 134 Copynumber: 3.1 Consensus size: 134
113070216 GCAGAGCTGG
* *
113070226 TTGAAGATAT-CAGATCTTGCTTTTCTGTATTTGGCAGCGAAGCAGATCGAAGATGGCAGATTTT
1 TTGAAGAT-TGCAGATCTTGCTTTCCTGTATTTGGCAGCGAAGCAGATCAAAGATGGCAGATTTT
*
113070290 ACCTCCCTGACAACAGTGGAGTACATTGAAGCCGATAATTCTATCTCCCTGTATTTGGCAGTAGA
65 ACCTCCCTGACAACAGTGGAGTACATTGAAGCCGATAATTCTATCTCCCTGTATTTGGCAGTGGA
113070355 ATAGA
130 ATAGA
*
113070360 TTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCAGATCAAAGATGGCAGATTTTA
1 TTGAAGATTGCAGATCTTGCTTTCCTGTATTTGGCAGCGAAGCAGATCAAAGATGGCAGATTTTA
* *
113070425 CCTCCCTGACCACAGTGGAGTACATTGAAGCCAATAATTCTATCTCCCTGTATTTGGCAGTGGAA
66 CCTCCCTGACAACAGTGGAGTACATTGAAGCCGATAATTCTATCTCCCTGTATTTGGCAGTGGAA
113070490 TAGA
131 TAGA
113070494 TTGAAGATTGCAGATCTTGCTTTCCTGTATTTGGCAGCGAAGCAGATCAAAGATGGCAGATTTTA
1 TTGAAGATTGCAGATCTTGCTTTCCTGTATTTGGCAGCGAAGCAGATCAAAGATGGCAGATTTTA
* *
113070559 CCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATTTGGCAGTGGAA
66 CCTCCCTGACAACAGTGGAGTACATTGAAGCCGATAATTCTATCTCCCTGTATTTGGCAGTGGAA
113070624 TAGA
131 TAGA
113070628 TTGAAGAT
1 TTGAAGAT
113070636 CAAGGATGGC
Statistics
Matches: 265, Mismatches: 10, Indels: 2
0.96 0.04 0.01
Matches are distributed among these distances:
133 1 0.00
134 264 1.00
ACGTcount: A:0.28, C:0.20, G:0.23, T:0.30
Consensus pattern (134 bp):
TTGAAGATTGCAGATCTTGCTTTCCTGTATTTGGCAGCGAAGCAGATCAAAGATGGCAGATTTTA
CCTCCCTGACAACAGTGGAGTACATTGAAGCCGATAATTCTATCTCCCTGTATTTGGCAGTGGAA
TAGA
Found at i:113070622 original size:45 final size:45
Alignment explanation
Indices: 113070571--113070730 Score: 126
Period size: 45 Copynumber: 3.4 Consensus size: 45
113070561 TCCCTGACTA
* *
113070571 CAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATTTGG
1 CAGTGGAATACATTGAAGCCGATAATTCTATCTCCCTGTATTTGG
* * * * * * *
113070616 CAGTGGAATAGATTGAAGATCAAGGATGGCAGATTTTACCTCCATGTGA-CT-A
1 CAGTGGAATACATTGAAG--C--CGAT---A-ATTCTATCTCCCTGT-ATTTGG
*
113070668 CAGTGGAGTACATTGAAGCCGATAATTCTATCTCCCTGTATTTGG
1 CAGTGGAATACATTGAAGCCGATAATTCTATCTCCCTGTATTTGG
*
113070713 CAGTGGAATAGATTGAAG
1 CAGTGGAATACATTGAAG
113070731 ATTGCAGATC
Statistics
Matches: 85, Mismatches: 19, Indels: 22
0.67 0.15 0.17
Matches are distributed among these distances:
43 1 0.01
44 13 0.15
45 33 0.39
47 1 0.01
48 3 0.04
49 3 0.04
50 1 0.01
52 17 0.20
53 12 0.14
54 1 0.01
ACGTcount: A:0.29, C:0.17, G:0.24, T:0.29
Consensus pattern (45 bp):
CAGTGGAATACATTGAAGCCGATAATTCTATCTCCCTGTATTTGG
Found at i:113070651 original size:95 final size:96
Alignment explanation
Indices: 113070537--113070732 Score: 349
Period size: 97 Copynumber: 2.0 Consensus size: 96
113070527 GCAGCGAAGC
113070537 AGATCAAAGATGGCAGATTTTACCTCC-CTGACTACAGTGGAGTACATTGAAGCCGATAACTCTA
1 AGATCAAAGATGGCAGATTTTACCTCCACTGACTACAGTGGAGTACATTGAAGCCGATAACTCTA
113070601 TCTCCCTGTATTTGGCAGTGGAATAGATTGA
66 TCTCCCTGTATTTGGCAGTGGAATAGATTGA
* * *
113070632 AGATCAAGGATGGCAGATTTTACCTCCATGTGACTACAGTGGAGTACATTGAAGCCGATAATTCT
1 AGATCAAAGATGGCAGATTTTACCTCCA-CTGACTACAGTGGAGTACATTGAAGCCGATAACTCT
113070697 ATCTCCCTGTATTTGGCAGTGGAATAGATTGA
65 ATCTCCCTGTATTTGGCAGTGGAATAGATTGA
113070729 AGAT
1 AGAT
113070733 TGCAGATCTT
Statistics
Matches: 96, Mismatches: 3, Indels: 2
0.95 0.03 0.02
Matches are distributed among these distances:
95 26 0.27
97 70 0.73
ACGTcount: A:0.30, C:0.18, G:0.23, T:0.29
Consensus pattern (96 bp):
AGATCAAAGATGGCAGATTTTACCTCCACTGACTACAGTGGAGTACATTGAAGCCGATAACTCTA
TCTCCCTGTATTTGGCAGTGGAATAGATTGA
Found at i:113070695 original size:231 final size:229
Alignment explanation
Indices: 113070403--113070866 Score: 847
Period size: 231 Copynumber: 2.0 Consensus size: 229
113070393 GCAGCGAAGC
113070403 AGATCAAAGATGGCAGATTTTACCTCCCTGACCACAGTGGAGTACATTGAAGCCAATAATTCTAT
1 AGATCAAAGATGGCAGATTTTACCTCCCTGACCACAGTGGAGTACATTGAAGCCAATAATTCTAT
*
113070468 CTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCTTTCCTGTATTTGGCAGCG
66 CTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCG
*
113070533 AAGCAGATCAAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACT
131 AAGCAGATCAAAGATGGCAGATTTTACCTCCCTGACCACAGTGGAGTACATTGAAGCCGATAACT
*
113070598 CTATCTCCCTGTATTTGGCAGTGGAATAGATTGA
196 CTATCTCCCTGTATCTGGCAGTGGAATAGATTGA
* * * *
113070632 AGATCAAGGATGGCAGATTTTACCTCCATGTGACTACAGTGGAGTACATTGAAGCCGATAATTCT
1 AGATCAAAGATGGCAGATTTTACCTCC--CTGACCACAGTGGAGTACATTGAAGCCAATAATTCT
113070697 ATCTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAG
64 ATCTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAG
113070762 CGAAGCAGATCAAAGATGGCAGATTTTACCTCCCTGACCACAGTGGAGTACATTGAAGCCGATAA
129 CGAAGCAGATCAAAGATGGCAGATTTTACCTCCCTGACCACAGTGGAGTACATTGAAGCCGATAA
113070827 CTCTATCTCCCTGTATCTGGCAGTGGAATAGATTGA
194 CTCTATCTCCCTGTATCTGGCAGTGGAATAGATTGA
113070863 AGAT
1 AGAT
113070867 TGCAGATCTT
Statistics
Matches: 226, Mismatches: 7, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
229 26 0.12
231 200 0.88
ACGTcount: A:0.28, C:0.20, G:0.23, T:0.29
Consensus pattern (229 bp):
AGATCAAAGATGGCAGATTTTACCTCCCTGACCACAGTGGAGTACATTGAAGCCAATAATTCTAT
CTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCG
AAGCAGATCAAAGATGGCAGATTTTACCTCCCTGACCACAGTGGAGTACATTGAAGCCGATAACT
CTATCTCCCTGTATCTGGCAGTGGAATAGATTGA
Found at i:113070787 original size:136 final size:135
Alignment explanation
Indices: 113070632--113071028 Score: 688
Period size: 134 Copynumber: 2.9 Consensus size: 135
113070622 AATAGATTGA
* *
113070632 AGATCAAGGATGGCAGATTTTACCTCCATGTGACTACAGTGGAGTACATTGAAGCCGATAATTCT
1 AGATCAAAGATGGCAGATTTTACCTCC-TGTGACTACAGTGGAGTACATTGAAGCCGATAACTCT
* *
113070697 ATCTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAG
65 ATCTCCCTGTATCTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTAGGCAG
113070762 CGAAGC
130 CGAAGC
* *
113070768 AGATCAAAGATGGCAGATTTTACCTCC-CTGACCACAGTGGAGTACATTGAAGCCGATAACTCTA
1 AGATCAAAGATGGCAGATTTTACCTCCTGTGACTACAGTGGAGTACATTGAAGCCGATAACTCTA
113070832 TCTCCCTGTATCTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTAGGCAGC
66 TCTCCCTGTATCTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTAGGCAGC
113070897 GAAGC
131 GAAGC
*
113070902 AGATCGAAGATGGCAGATTTTACCTCCCTGTGACTACAGTGGAGTACATTGAAGCCGATAACTCT
1 AGATCAAAGATGGCAGATTTTACCT-CCTGTGACTACAGTGGAGTACATTGAAGCCGATAACTCT
* *
113070967 ATCTCCCTGTATCGGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCTTGTATTAGG
65 ATCTCCCTGTATCTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTAGG
113071029 TAGGAAGTAG
Statistics
Matches: 248, Mismatches: 11, Indels: 4
0.94 0.04 0.02
Matches are distributed among these distances:
134 126 0.51
135 2 0.01
136 120 0.48
ACGTcount: A:0.27, C:0.20, G:0.24, T:0.29
Consensus pattern (135 bp):
AGATCAAAGATGGCAGATTTTACCTCCTGTGACTACAGTGGAGTACATTGAAGCCGATAACTCTA
TCTCCCTGTATCTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTAGGCAGC
GAAGC
Found at i:113071438 original size:132 final size:132
Alignment explanation
Indices: 113070997--113071836 Score: 981
Period size: 132 Copynumber: 6.3 Consensus size: 132
113070987 GGAATAGATT
* *** *
113070997 GAAGATTGCAGATCTTGCCTTCTTGTATTAGGTAG-GAAGTAGA-CTGAAGAAAGCAGATCTTGT
1 GAAGA-TGCAGATCTTGTCTTCCCATATT-GGTGGCGAAGTAGATC-GAAGAAAGCAGATCTTGT
* * * **
113071060 CTTCATGTATTGGCGTGAAGTAGATCAAAGATAACAGGA-CCGGTCTTCCTATATTGGTAGGAAG
63 CTTCATGTATTGGCGTGAAGTAGATCGAAGGTAGCA-GATCCTATCTTCCTATATTGGTAGGAAG
113071124 TGGATC
127 TGGATC
* * * * * *
113071130 GACGACGCAGATCTTGTCTTCCCATACTGGTGGCGAATTAGATCGAAGAAAGCAGATCTTATTTT
1 GAAGATGCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTT
* ** * * * * * ** * * *
113071195 CATATATTGATGTGAAATAGATTGAAGATTGCAGATCTTGCCTTCTTGTATTAGGTAGGAAGTAG
66 CATGTATTGGCGTGAAGTAGATCGAAGGTAGCAGATCCTATCTTCCTATATT-GGTAGGAAGTGG
113071260 ATC
130 ATC
* * *** * * ** * *
113071263 GCAGAAAGCAGATCTTGTCTTCATGTATTGG-CGTGAAGTAGATCGAAGGTAGCAGATCCTATCT
1 GAAG-ATGCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCT
* * * * * * * *
113071327 TCTTATATTGGTAG-GAAGTAGATCGAAGAT-GCAGATCTTGTCTTCCCATATTGGTGGCGAAGT
65 TCATGTATTGG-CGTGAAGTAGATCGAAGGTAGCAGATCCTATCTTCCTATATTGGTAG-GAAGT
*
113071390 AGATC
128 GGATC
* *
113071395 GCAGATGCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGCAGAAAGCAGATCTTGTCTT
1 GAAGATGCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTT
* * *
113071460 CATGTATTGGCGTGAAGTAGACCGAAGGTAGCAGATCCTATCCTCTTATATTGGTAGGAAGTGGA
66 CATGTATTGGCGTGAAGTAGATCGAAGGTAGCAGATCCTATCTTCCTATATTGGTAGGAAGTGGA
113071525 TC
131 TC
*
113071527 GAAGATGCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGCAGAAAGCAGATCTTGTCTT
1 GAAGATGCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTT
* *
113071592 CATGTATTGGCGTGAAGTAGATCGAAGGTAGCAGATCCTATCCTCTTATATTGGTAGGAAGTGGA
66 CATGTATTGGCGTGAAGTAGATCGAAGGTAGCAGATCCTATCTTCCTATATTGGTAGGAAGTGGA
113071657 TC
131 TC
* *
113071659 GAAGATGCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGCAGAAAGCAGATATTGTCTT
1 GAAGATGCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTT
* *
113071724 CATGTATTGGCGTGAAGTAGATCGAAGGTAGTAGATCCTATTTTCCTATATTGGTAGGAAGTGGA
66 CATGTATTGGCGTGAAGTAGATCGAAGGTAGCAGATCCTATCTTCCTATATTGGTAGGAAGTGGA
113071789 TC
131 TC
* ** *
113071791 GAAGATGCAGATCTTGTCTCCCCATATTGGCAGCGAAGCAGATCGA
1 GAAGATGCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGA
113071837 TGATGGCAGA
Statistics
Matches: 613, Mismatches: 84, Indels: 21
0.85 0.12 0.03
Matches are distributed among these distances:
131 33 0.05
132 467 0.76
133 91 0.15
134 22 0.04
ACGTcount: A:0.28, C:0.16, G:0.26, T:0.30
Consensus pattern (132 bp):
GAAGATGCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTT
CATGTATTGGCGTGAAGTAGATCGAAGGTAGCAGATCCTATCTTCCTATATTGGTAGGAAGTGGA
TC
Found at i:113071835 original size:44 final size:44
Alignment explanation
Indices: 113070991--113071847 Score: 610
Period size: 44 Copynumber: 19.4 Consensus size: 44
113070981 GGCAGTGGAA
* * * *
113070991 TAGATTGAAGATTGCAGATCTTGCCTTCTTGTATTAGGTAG-GAAG
1 TAGATCGAAGA-TGCAGATCTTGTCTTCCTATATT-GGTAGCGAAG
* * * * *
113071036 TAGA-CTGAAGAAAGCAGATCTTGTCTTCATGTATTGG-CGTGAAG
1 TAGATC-GAAG-ATGCAGATCTTGTCTTCCTATATTGGTAGCGAAG
* * **
113071080 TAGATCAAAGATAACAGGA-CCGGTCTTCCTATATTGGTAG-GAAG
1 TAGATCGAAGAT-GCA-GATCTTGTCTTCCTATATTGGTAGCGAAG
* * * * * * *
113071124 TGGATCGACGACGCAGATCTTGTCTTCCCATACTGGTGGCGAAT
1 TAGATCGAAGATGCAGATCTTGTCTTCCTATATTGGTAGCGAAG
* * * * * * *
113071168 TAGATCGAAGAAAGCAGATCTTATTTTCATATATTGAT-GTGAAA
1 TAGATCGAAG-ATGCAGATCTTGTCTTCCTATATTGGTAGCGAAG
* * * *
113071212 TAGATTGAAGATTGCAGATCTTGCCTTCTTGTATTAGGTAG-GAAG
1 TAGATCGAAGA-TGCAGATCTTGTCTTCCTATATT-GGTAGCGAAG
* * * * * *
113071257 TAGATCGCAGAAAGCAGATCTTGTCTTCATGTATTGG-CGTGAAG
1 TAGATCGAAG-ATGCAGATCTTGTCTTCCTATATTGGTAGCGAAG
* * * *
113071301 TAGATCGAAGGTAGCAGATCCTATCTTCTTATATTGGTAG-GAAG
1 TAGATCGAAGAT-GCAGATCTTGTCTTCCTATATTGGTAGCGAAG
* *
113071345 TAGATCGAAGATGCAGATCTTGTCTTCCCATATTGGTGGCGAAG
1 TAGATCGAAGATGCAGATCTTGTCTTCCTATATTGGTAGCGAAG
* * *
113071389 TAGATCGCAGATGCAGATCTTGTCTTCCCATATTGGTGGCGAAG
1 TAGATCGAAGATGCAGATCTTGTCTTCCTATATTGGTAGCGAAG
* * * * * *
113071433 TAGATCGCAGAAAGCAGATCTTGTCTTCATGTATTGG-CGTGAAG
1 TAGATCGAAG-ATGCAGATCTTGTCTTCCTATATTGGTAGCGAAG
* * * * * *
113071477 TAGACCGAAGGTAGCAGATCCTATCCTCTTATATTGGTAG-GAAG
1 TAGATCGAAGAT-GCAGATCTTGTCTTCCTATATTGGTAGCGAAG
* * *
113071521 TGGATCGAAGATGCAGATCTTGTCTTCCCATATTGGTGGCGAAG
1 TAGATCGAAGATGCAGATCTTGTCTTCCTATATTGGTAGCGAAG
* * * * * *
113071565 TAGATCGCAGAAAGCAGATCTTGTCTTCATGTATTGG-CGTGAAG
1 TAGATCGAAG-ATGCAGATCTTGTCTTCCTATATTGGTAGCGAAG
* * * * *
113071609 TAGATCGAAGGTAGCAGATCCTATCCTCTTATATTGGTAG-GAAG
1 TAGATCGAAGAT-GCAGATCTTGTCTTCCTATATTGGTAGCGAAG
* * *
113071653 TGGATCGAAGATGCAGATCTTGTCTTCCCATATTGGTGGCGAAG
1 TAGATCGAAGATGCAGATCTTGTCTTCCTATATTGGTAGCGAAG
* * * * * * *
113071697 TAGATCGCAGAAAGCAGATATTGTCTTCATGTATTGG-CGTGAAG
1 TAGATCGAAG-ATGCAGATCTTGTCTTCCTATATTGGTAGCGAAG
* * * * *
113071741 TAGATCGAAGGTAGTAGATCCTATTTTCCTATATTGGTAG-GAAG
1 TAGATCGAAGAT-GCAGATCTTGTCTTCCTATATTGGTAGCGAAG
* * * *
113071785 TGGATCGAAGATGCAGATCTTGTCTCCCCATATTGGCAGCGAAG
1 TAGATCGAAGATGCAGATCTTGTCTTCCTATATTGGTAGCGAAG
* *
113071829 CAGATCGATGATGGCAGAT
1 TAGATCGAAGAT-GCAGAT
113071848 TTTACCTCCC
Statistics
Matches: 634, Mismatches: 147, Indels: 62
0.75 0.17 0.07
Matches are distributed among these distances:
42 2 0.00
43 106 0.17
44 363 0.57
45 160 0.25
46 3 0.00
ACGTcount: A:0.28, C:0.16, G:0.26, T:0.30
Consensus pattern (44 bp):
TAGATCGAAGATGCAGATCTTGTCTTCCTATATTGGTAGCGAAG
Found at i:113071985 original size:40 final size:42
Alignment explanation
Indices: 113071892--113072057 Score: 187
Period size: 42 Copynumber: 4.0 Consensus size: 42
113071882 CCTATAACTC
113071892 ATCTCCCTAAGCAGTAGTGGAGCAGACAAAACCACAGATCTT
1 ATCTCCCTAAGCAGTAGTGGAGCAGACAAAACCACAGATCTT
** *
113071934 ATCTCCCTAAGCAGTAGTGGAGCAGATC-GCATCA-AG-TCTT
1 ATCTCCCTAAGCAGTAGTGGAGCAGA-CAAAACCACAGATCTT
* * *
113071974 ATCTCCTTAAGCAGTAGCGGAACAGA-AGAAACCACAGATCTT
1 ATCTCCCTAAGCAGTAGTGGAGCAGACA-AAACCACAGATCTT
** * *
113072016 ATCTCCCTAAATAGTAGTGGAGCAGACTAAAAACACAAATCT
1 ATCTCCCTAAGCAGTAGTGGAGCAGAC-AAAACCACAGATCT
113072058 CATCCCCATG
Statistics
Matches: 101, Mismatches: 16, Indels: 13
0.78 0.12 0.10
Matches are distributed among these distances:
40 30 0.30
41 4 0.04
42 54 0.53
43 12 0.12
44 1 0.01
ACGTcount: A:0.36, C:0.24, G:0.19, T:0.21
Consensus pattern (42 bp):
ATCTCCCTAAGCAGTAGTGGAGCAGACAAAACCACAGATCTT
Found at i:113073799 original size:12 final size:12
Alignment explanation
Indices: 113073784--113073808 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
113073774 AATATTTTTA
113073784 TATACATATTAT
1 TATACATATTAT
113073796 TATACATATTAT
1 TATACATATTAT
113073808 T
1 T
113073809 CTCATTGAGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.40, C:0.08, G:0.00, T:0.52
Consensus pattern (12 bp):
TATACATATTAT
Found at i:113080520 original size:86 final size:86
Alignment explanation
Indices: 113080375--113080724 Score: 556
Period size: 86 Copynumber: 4.1 Consensus size: 86
113080365 AGTAAAAATT
* * * * * *
113080375 GAAGATAAACCTTGCCTCTCTCGGTCGTAGCAGAGCTGGTTGAAGTTATCAGATCTTGCCTTCCT
1 GAAGACAAACCTTGCCACTCTCGTTTGTAGCAGAGCTGGTTGAAGATAGCAGATCTTGCCTTCCT
113080440 GCATTGACAGCGAAGCAGATC
66 GCATTGACAGCGAAGCAGATC
*
113080461 GAAGACAAACCTTGCCACTCTCGTTTGTAGTAGAGCTGGTTGAAGATAGCAGATCTTGCCTTCCT
1 GAAGACAAACCTTGCCACTCTCGTTTGTAGCAGAGCTGGTTGAAGATAGCAGATCTTGCCTTCCT
113080526 GCATTGACAGCGAAGCAGATC
66 GCATTGACAGCGAAGCAGATC
*
113080547 GAAGACAAACCTTGCCACTCTCGTTTGTAGTAGAGCTGGTTGAAGATAGCAGATCTTGCCTTCCT
1 GAAGACAAACCTTGCCACTCTCGTTTGTAGCAGAGCTGGTTGAAGATAGCAGATCTTGCCTTCCT
*
113080612 GCACTGACAGCGAAGCAGATC
66 GCATTGACAGCGAAGCAGATC
* * * *
113080633 GAAGACAAACCTTGCCTCTCTCGTTTGTAGCAGAGCTGGTTGAAGATATCAGATCTTGCTTTTCT
1 GAAGACAAACCTTGCCACTCTCGTTTGTAGCAGAGCTGGTTGAAGATAGCAGATCTTGCCTTCCT
* *
113080698 GTATTTGGCAGCGAAGCAGATC
66 GCA-TTGACAGCGAAGCAGATC
113080720 GAAGA
1 GAAGA
113080725 TGGCAGATTT
Statistics
Matches: 247, Mismatches: 16, Indels: 1
0.94 0.06 0.00
Matches are distributed among these distances:
86 226 0.91
87 21 0.09
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.27
Consensus pattern (86 bp):
GAAGACAAACCTTGCCACTCTCGTTTGTAGCAGAGCTGGTTGAAGATAGCAGATCTTGCCTTCCT
GCATTGACAGCGAAGCAGATC
Found at i:113080562 original size:42 final size:42
Alignment explanation
Indices: 113080429--113080649 Score: 107
Period size: 42 Copynumber: 5.2 Consensus size: 42
113080419 GTTATCAGAT
113080429 CTTGCCTTCCTGCATTGACAGCGAAGCAGATCGAAGACAAAC
1 CTTGCCTTCCTGCATTGACAGCGAAGCAGATCGAAGACAAAC
* * * * * * * * *
113080471 CTTGCC-ACTCT-CGTTTG-TAG-TAGAGCTGGTTGAAGATAGCAGAT
1 CTTGCCTTC-CTGC-ATTGACAGCGA-AGCAGATCGAAG--A-CAAAC
113080515 CTTGCCTTCCTGCATTGACAGCGAAGCAGATCGAAGACAAAC
1 CTTGCCTTCCTGCATTGACAGCGAAGCAGATCGAAGACAAAC
* * * * * * * * *
113080557 CTTGCC-ACTCT-CGTTTG-TAG-TAGAGCTGGTTGAAGATAGCAGAT
1 CTTGCCTTC-CTGC-ATTGACAGCGA-AGCAGATCGAAG--A-CAAAC
*
113080601 CTTGCCTTCCTGCACTGACAGCGAAGCAGATCGAAGACAAAC
1 CTTGCCTTCCTGCATTGACAGCGAAGCAGATCGAAGACAAAC
113080643 CTTGCCT
1 CTTGCCT
113080650 CTCTCGTTTG
Statistics
Matches: 122, Mismatches: 37, Indels: 40
0.61 0.19 0.20
Matches are distributed among these distances:
40 2 0.02
41 26 0.21
42 35 0.29
43 4 0.03
44 27 0.22
45 26 0.21
46 2 0.02
ACGTcount: A:0.27, C:0.25, G:0.24, T:0.24
Consensus pattern (42 bp):
CTTGCCTTCCTGCATTGACAGCGAAGCAGATCGAAGACAAAC
Found at i:113080912 original size:134 final size:134
Alignment explanation
Indices: 113080672--113081081 Score: 714
Period size: 134 Copynumber: 3.1 Consensus size: 134
113080662 GCAGAGCTGG
* *
113080672 TTGAAGATAT-CAGATCTTGCTTTTCTGTATTTGGCAGCGAAGCAGATCGAAGATGGCAGATTTT
1 TTGAAGAT-TGCAGATCTTGCTTTCCTGTATTTGGCAGCGAAGCAGATCAAAGATGGCAGATTTT
*
113080736 ACCTCCCTGACAACAGTGGAGTACATTGAAGCCGATAATTCTATCTCCCTGTATTTGGCAGTAGA
65 ACCTCCCTGACAACAGTGGAGTACATTGAAGCCGATAATTCTATCTCCCTGTATTTGGCAGTGGA
113080801 ATAGA
130 ATAGA
* *
113080806 TTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCAGATCAAAGATAGCAGATTTTA
1 TTGAAGATTGCAGATCTTGCTTTCCTGTATTTGGCAGCGAAGCAGATCAAAGATGGCAGATTTTA
* *
113080871 CCTCCCTGACCACAGTGGAGTACATTGAAGCCAATAATTCTATCTCCCTGTATTTGGCAGTGGAA
66 CCTCCCTGACAACAGTGGAGTACATTGAAGCCGATAATTCTATCTCCCTGTATTTGGCAGTGGAA
113080936 TAGA
131 TAGA
*
113080940 TTGAAGATTGCAGATCTTGCTTTCCTGTATTTGGCAGCGAAGCAGATCAAAGATGGTAGATTTTA
1 TTGAAGATTGCAGATCTTGCTTTCCTGTATTTGGCAGCGAAGCAGATCAAAGATGGCAGATTTTA
* *
113081005 CCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATTTGGCAGTGGAA
66 CCTCCCTGACAACAGTGGAGTACATTGAAGCCGATAATTCTATCTCCCTGTATTTGGCAGTGGAA
113081070 TAGA
131 TAGA
113081074 TTGAAGAT
1 TTGAAGAT
113081082 CAAGGATGGC
Statistics
Matches: 262, Mismatches: 13, Indels: 2
0.95 0.05 0.01
Matches are distributed among these distances:
133 1 0.00
134 261 1.00
ACGTcount: A:0.28, C:0.19, G:0.22, T:0.30
Consensus pattern (134 bp):
TTGAAGATTGCAGATCTTGCTTTCCTGTATTTGGCAGCGAAGCAGATCAAAGATGGCAGATTTTA
CCTCCCTGACAACAGTGGAGTACATTGAAGCCGATAATTCTATCTCCCTGTATTTGGCAGTGGAA
TAGA
Found at i:113081098 original size:95 final size:96
Alignment explanation
Indices: 113080983--113081178 Score: 340
Period size: 97 Copynumber: 2.0 Consensus size: 96
113080973 GCAGCGAAGC
*
113080983 AGATCAAAGATGGTAGATTTTACCTCC-CTGACTACAGTGGAGTACATTGAAGCCGATAACTCTA
1 AGATCAAAGATGGCAGATTTTACCTCCACTGACTACAGTGGAGTACATTGAAGCCGATAACTCTA
113081047 TCTCCCTGTATTTGGCAGTGGAATAGATTGA
66 TCTCCCTGTATTTGGCAGTGGAATAGATTGA
* * *
113081078 AGATCAAGGATGGCAGATTTTACCTCCATGTGACTACAGTGGAGTACATTGAAGCCGATAATTCT
1 AGATCAAAGATGGCAGATTTTACCTCCA-CTGACTACAGTGGAGTACATTGAAGCCGATAACTCT
113081143 ATCTCCCTGTATTTGGCAGTGGAATAGATTGA
65 ATCTCCCTGTATTTGGCAGTGGAATAGATTGA
113081175 AGAT
1 AGAT
113081179 TGCAGATCTT
Statistics
Matches: 95, Mismatches: 4, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
95 25 0.26
97 70 0.74
ACGTcount: A:0.30, C:0.18, G:0.23, T:0.30
Consensus pattern (96 bp):
AGATCAAAGATGGCAGATTTTACCTCCACTGACTACAGTGGAGTACATTGAAGCCGATAACTCTA
TCTCCCTGTATTTGGCAGTGGAATAGATTGA
Found at i:113081141 original size:231 final size:229
Alignment explanation
Indices: 113080849--113081312 Score: 829
Period size: 231 Copynumber: 2.0 Consensus size: 229
113080839 GCAGCGAAGC
113080849 AGATCAAAGATAGCAGATTTTACCTCCCTGACCACAGTGGAGTACATTGAAGCCAATAATTCTAT
1 AGATCAAAGATAGCAGATTTTACCTCCCTGACCACAGTGGAGTACATTGAAGCCAATAATTCTAT
*
113080914 CTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCTTTCCTGTATTTGGCAGCG
66 CTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCG
* *
113080979 AAGCAGATCAAAGATGGTAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACT
131 AAGCAGATCAAAGATGGCAGATTTTACCTCCCTGACCACAGTGGAGTACATTGAAGCCGATAACT
*
113081044 CTATCTCCCTGTATTTGGCAGTGGAATAGATTGA
196 CTATCTCCCTGTATCTGGCAGTGGAATAGATTGA
* * * * *
113081078 AGATCAAGGATGGCAGATTTTACCTCCATGTGACTACAGTGGAGTACATTGAAGCCGATAATTCT
1 AGATCAAAGATAGCAGATTTTACCTCC--CTGACCACAGTGGAGTACATTGAAGCCAATAATTCT
113081143 ATCTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAG
64 ATCTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAG
113081208 CGAAGCAGATCAAAGATGGCAGATTTTACCTCCCTGACCACAGTGGAGTACATTGAAGCCGATAA
129 CGAAGCAGATCAAAGATGGCAGATTTTACCTCCCTGACCACAGTGGAGTACATTGAAGCCGATAA
113081273 CTCTATCTCCCTGTATCTGGCAGTGGAATAGATTGA
194 CTCTATCTCCCTGTATCTGGCAGTGGAATAGATTGA
113081309 AGAT
1 AGAT
113081313 TGCAGATCTT
Statistics
Matches: 224, Mismatches: 9, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
229 25 0.11
231 199 0.89
ACGTcount: A:0.28, C:0.20, G:0.23, T:0.29
Consensus pattern (229 bp):
AGATCAAAGATAGCAGATTTTACCTCCCTGACCACAGTGGAGTACATTGAAGCCAATAATTCTAT
CTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCG
AAGCAGATCAAAGATGGCAGATTTTACCTCCCTGACCACAGTGGAGTACATTGAAGCCGATAACT
CTATCTCCCTGTATCTGGCAGTGGAATAGATTGA
Found at i:113081233 original size:136 final size:135
Alignment explanation
Indices: 113081078--113081474 Score: 688
Period size: 134 Copynumber: 2.9 Consensus size: 135
113081068 AATAGATTGA
* *
113081078 AGATCAAGGATGGCAGATTTTACCTCCATGTGACTACAGTGGAGTACATTGAAGCCGATAATTCT
1 AGATCAAAGATGGCAGATTTTACCTCC-TGTGACTACAGTGGAGTACATTGAAGCCGATAACTCT
* *
113081143 ATCTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAG
65 ATCTCCCTGTATCTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTAGGCAG
113081208 CGAAGC
130 CGAAGC
* *
113081214 AGATCAAAGATGGCAGATTTTACCTCC-CTGACCACAGTGGAGTACATTGAAGCCGATAACTCTA
1 AGATCAAAGATGGCAGATTTTACCTCCTGTGACTACAGTGGAGTACATTGAAGCCGATAACTCTA
113081278 TCTCCCTGTATCTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTAGGCAGC
66 TCTCCCTGTATCTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTAGGCAGC
113081343 GAAGC
131 GAAGC
*
113081348 AGATCGAAGATGGCAGATTTTACCTCCCTGTGACTACAGTGGAGTACATTGAAGCCGATAACTCT
1 AGATCAAAGATGGCAGATTTTACCT-CCTGTGACTACAGTGGAGTACATTGAAGCCGATAACTCT
* *
113081413 ATCTCCCTGTATCGGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCTTGTATTAGG
65 ATCTCCCTGTATCTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTAGG
113081475 TAGGAAGTAG
Statistics
Matches: 248, Mismatches: 11, Indels: 4
0.94 0.04 0.02
Matches are distributed among these distances:
134 126 0.51
135 2 0.01
136 120 0.48
ACGTcount: A:0.27, C:0.20, G:0.24, T:0.29
Consensus pattern (135 bp):
AGATCAAAGATGGCAGATTTTACCTCCTGTGACTACAGTGGAGTACATTGAAGCCGATAACTCTA
TCTCCCTGTATCTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTAGGCAGC
GAAGC
Found at i:113081378 original size:46 final size:46
Alignment explanation
Indices: 113081145--113081378 Score: 131
Period size: 46 Copynumber: 5.2 Consensus size: 46
113081135 ATAATTCTAT
* * * * *
113081145 CTCCCTGTATTTGGCAGTGGAA-TAGATTGAAGATTGCAGATCTTGC
1 CTCCCTGTATTAGGCAG-CGAAGTAGATTGAAGATGGCAGATTTTAC
* * * **
113081191 CTTCCTGTATTTGGCAGCGAAGCAGATCAAAGATGGCAGATTTTAC
1 CTCCCTGTATTAGGCAGCGAAGTAGATTGAAGATGGCAGATTTTAC
** * * * ** ** * * *
113081237 CTCCCTG-ACCA--CAGTGGAGTACATTGAAGCCGATA-ACTCTAT
1 CTCCCTGTATTAGGCAGCGAAGTAGATTGAAGATGGCAGATTTTAC
* * * *
113081279 CTCCCTGTATCT-GGCAGTGGAA-TAGATTGAAGATTGCAGATCTTGC
1 CTCCCTGTAT-TAGGCAG-CGAAGTAGATTGAAGATGGCAGATTTTAC
* * *
113081325 CTTCCTGTATTAGGCAGCGAAGCAGATCGAAGATGGCAGATTTTAC
1 CTCCCTGTATTAGGCAGCGAAGTAGATTGAAGATGGCAGATTTTAC
113081371 CTCCCTGT
1 CTCCCTGT
113081379 GACTACAGTG
Statistics
Matches: 131, Mismatches: 48, Indels: 18
0.66 0.24 0.09
Matches are distributed among these distances:
42 11 0.08
43 15 0.11
45 21 0.16
46 84 0.64
ACGTcount: A:0.26, C:0.22, G:0.24, T:0.29
Consensus pattern (46 bp):
CTCCCTGTATTAGGCAGCGAAGTAGATTGAAGATGGCAGATTTTAC
Found at i:113081884 original size:132 final size:132
Alignment explanation
Indices: 113081443--113082282 Score: 981
Period size: 132 Copynumber: 6.3 Consensus size: 132
113081433 GGAATAGATT
* *** *
113081443 GAAGATTGCAGATCTTGCCTTCTTGTATTAGGTAG-GAAGTAGA-CTGAAGAAAGCAGATCTTGT
1 GAAGA-TGCAGATCTTGTCTTCCCATATT-GGTGGCGAAGTAGATC-GAAGAAAGCAGATCTTGT
* * * **
113081506 CTTCATGTATTGGCGTGAAGTAGATCAAAGATAACAGGA-CCGGTCTTCCTATATTGGTAGGAAG
63 CTTCATGTATTGGCGTGAAGTAGATCGAAGGTAGCA-GATCCTATCTTCCTATATTGGTAGGAAG
113081570 TGGATC
127 TGGATC
* * * * * *
113081576 GACGACGCAGATCTTGTCTTCCCATACTGGTGGCGAATTAGATCGAAGAAAGCAGATCTTATTTT
1 GAAGATGCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTT
* ** * * * * * ** * * *
113081641 CATATATTGATGTGAAATAGATTGAAGATTGCAGATCTTGCCTTCTTGTATTAGGTAGGAAGTAG
66 CATGTATTGGCGTGAAGTAGATCGAAGGTAGCAGATCCTATCTTCCTATATT-GGTAGGAAGTGG
113081706 ATC
130 ATC
* * *** * * ** * *
113081709 GCAGAAAGCAGATCTTGTCTTCATGTATTGG-CGTGAAGTAGATCGAAGGTAGCAGATCCTATCT
1 GAAG-ATGCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCT
* * * * * * * *
113081773 TCTTATATTGGTAG-GAAGTAGATCGAAGAT-GCAGATCTTGTCTTCCCATATTGGTGGCGAAGT
65 TCATGTATTGG-CGTGAAGTAGATCGAAGGTAGCAGATCCTATCTTCCTATATTGGTAG-GAAGT
*
113081836 AGATC
128 GGATC
* *
113081841 GCAGATGCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGCAGAAAGCAGATCTTGTCTT
1 GAAGATGCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTT
* * *
113081906 CATGTATTGGCGTGAAGTAGACCGAAGGTAGCAGATCCTATCCTCTTATATTGGTAGGAAGTGGA
66 CATGTATTGGCGTGAAGTAGATCGAAGGTAGCAGATCCTATCTTCCTATATTGGTAGGAAGTGGA
113081971 TC
131 TC
*
113081973 GAAGATGCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGCAGAAAGCAGATCTTGTCTT
1 GAAGATGCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTT
* *
113082038 CATGTATTGGCGTGAAGTAGATCGAAGGTAGCAGATCCTATCCTCTTATATTGGTAGGAAGTGGA
66 CATGTATTGGCGTGAAGTAGATCGAAGGTAGCAGATCCTATCTTCCTATATTGGTAGGAAGTGGA
113082103 TC
131 TC
* *
113082105 GAAGATGCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGCAGAAAGCAGATATTGTCTT
1 GAAGATGCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTT
* *
113082170 CATGTATTGGCGTGAAGTAGATCGAAGGTAGTAGATCCTATTTTCCTATATTGGTAGGAAGTGGA
66 CATGTATTGGCGTGAAGTAGATCGAAGGTAGCAGATCCTATCTTCCTATATTGGTAGGAAGTGGA
113082235 TC
131 TC
* ** *
113082237 GAAGATGCAGATCTTGTCTCCCCATATTGGCAGCGAAGCAGATCGA
1 GAAGATGCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGA
113082283 TGATGGCAGA
Statistics
Matches: 613, Mismatches: 84, Indels: 21
0.85 0.12 0.03
Matches are distributed among these distances:
131 33 0.05
132 467 0.76
133 91 0.15
134 22 0.04
ACGTcount: A:0.28, C:0.16, G:0.26, T:0.30
Consensus pattern (132 bp):
GAAGATGCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTT
CATGTATTGGCGTGAAGTAGATCGAAGGTAGCAGATCCTATCTTCCTATATTGGTAGGAAGTGGA
TC
Found at i:113082281 original size:44 final size:44
Alignment explanation
Indices: 113081437--113082293 Score: 610
Period size: 44 Copynumber: 19.4 Consensus size: 44
113081427 GGCAGTGGAA
* * * *
113081437 TAGATTGAAGATTGCAGATCTTGCCTTCTTGTATTAGGTAG-GAAG
1 TAGATCGAAGA-TGCAGATCTTGTCTTCCTATATT-GGTAGCGAAG
* * * * *
113081482 TAGA-CTGAAGAAAGCAGATCTTGTCTTCATGTATTGG-CGTGAAG
1 TAGATC-GAAG-ATGCAGATCTTGTCTTCCTATATTGGTAGCGAAG
* * **
113081526 TAGATCAAAGATAACAGGA-CCGGTCTTCCTATATTGGTAG-GAAG
1 TAGATCGAAGAT-GCA-GATCTTGTCTTCCTATATTGGTAGCGAAG
* * * * * * *
113081570 TGGATCGACGACGCAGATCTTGTCTTCCCATACTGGTGGCGAAT
1 TAGATCGAAGATGCAGATCTTGTCTTCCTATATTGGTAGCGAAG
* * * * * * *
113081614 TAGATCGAAGAAAGCAGATCTTATTTTCATATATTGAT-GTGAAA
1 TAGATCGAAG-ATGCAGATCTTGTCTTCCTATATTGGTAGCGAAG
* * * *
113081658 TAGATTGAAGATTGCAGATCTTGCCTTCTTGTATTAGGTAG-GAAG
1 TAGATCGAAGA-TGCAGATCTTGTCTTCCTATATT-GGTAGCGAAG
* * * * * *
113081703 TAGATCGCAGAAAGCAGATCTTGTCTTCATGTATTGG-CGTGAAG
1 TAGATCGAAG-ATGCAGATCTTGTCTTCCTATATTGGTAGCGAAG
* * * *
113081747 TAGATCGAAGGTAGCAGATCCTATCTTCTTATATTGGTAG-GAAG
1 TAGATCGAAGAT-GCAGATCTTGTCTTCCTATATTGGTAGCGAAG
* *
113081791 TAGATCGAAGATGCAGATCTTGTCTTCCCATATTGGTGGCGAAG
1 TAGATCGAAGATGCAGATCTTGTCTTCCTATATTGGTAGCGAAG
* * *
113081835 TAGATCGCAGATGCAGATCTTGTCTTCCCATATTGGTGGCGAAG
1 TAGATCGAAGATGCAGATCTTGTCTTCCTATATTGGTAGCGAAG
* * * * * *
113081879 TAGATCGCAGAAAGCAGATCTTGTCTTCATGTATTGG-CGTGAAG
1 TAGATCGAAG-ATGCAGATCTTGTCTTCCTATATTGGTAGCGAAG
* * * * * *
113081923 TAGACCGAAGGTAGCAGATCCTATCCTCTTATATTGGTAG-GAAG
1 TAGATCGAAGAT-GCAGATCTTGTCTTCCTATATTGGTAGCGAAG
* * *
113081967 TGGATCGAAGATGCAGATCTTGTCTTCCCATATTGGTGGCGAAG
1 TAGATCGAAGATGCAGATCTTGTCTTCCTATATTGGTAGCGAAG
* * * * * *
113082011 TAGATCGCAGAAAGCAGATCTTGTCTTCATGTATTGG-CGTGAAG
1 TAGATCGAAG-ATGCAGATCTTGTCTTCCTATATTGGTAGCGAAG
* * * * *
113082055 TAGATCGAAGGTAGCAGATCCTATCCTCTTATATTGGTAG-GAAG
1 TAGATCGAAGAT-GCAGATCTTGTCTTCCTATATTGGTAGCGAAG
* * *
113082099 TGGATCGAAGATGCAGATCTTGTCTTCCCATATTGGTGGCGAAG
1 TAGATCGAAGATGCAGATCTTGTCTTCCTATATTGGTAGCGAAG
* * * * * * *
113082143 TAGATCGCAGAAAGCAGATATTGTCTTCATGTATTGG-CGTGAAG
1 TAGATCGAAG-ATGCAGATCTTGTCTTCCTATATTGGTAGCGAAG
* * * * *
113082187 TAGATCGAAGGTAGTAGATCCTATTTTCCTATATTGGTAG-GAAG
1 TAGATCGAAGAT-GCAGATCTTGTCTTCCTATATTGGTAGCGAAG
* * * *
113082231 TGGATCGAAGATGCAGATCTTGTCTCCCCATATTGGCAGCGAAG
1 TAGATCGAAGATGCAGATCTTGTCTTCCTATATTGGTAGCGAAG
* *
113082275 CAGATCGATGATGGCAGAT
1 TAGATCGAAGAT-GCAGAT
113082294 TTTACCTCCC
Statistics
Matches: 634, Mismatches: 147, Indels: 62
0.75 0.17 0.07
Matches are distributed among these distances:
42 2 0.00
43 106 0.17
44 363 0.57
45 160 0.25
46 3 0.00
ACGTcount: A:0.28, C:0.16, G:0.26, T:0.30
Consensus pattern (44 bp):
TAGATCGAAGATGCAGATCTTGTCTTCCTATATTGGTAGCGAAG
Found at i:113082431 original size:40 final size:42
Alignment explanation
Indices: 113082338--113082503 Score: 196
Period size: 42 Copynumber: 4.0 Consensus size: 42
113082328 CCTATAACTC
113082338 ATCTCCCTAAGCAGTAGTGGAGCAGACAAAACCACAGATCTT
1 ATCTCCCTAAGCAGTAGTGGAGCAGACAAAACCACAGATCTT
** *
113082380 ATCTCCCTAAGCAGTAGTGGAGCAGATC-GCATCA-AG-TCTT
1 ATCTCCCTAAGCAGTAGTGGAGCAGA-CAAAACCACAGATCTT
* *
113082420 ATCTCCTTAAGCAGTAGCGGAGCAGA-AGAAACCACAGATCTT
1 ATCTCCCTAAGCAGTAGTGGAGCAGACA-AAACCACAGATCTT
** * *
113082462 ATCTCCCTAAATAGTAGTGGAGCAGACTAAAAACACAAATCT
1 ATCTCCCTAAGCAGTAGTGGAGCAGAC-AAAACCACAGATCT
113082504 CATCCCCATG
Statistics
Matches: 103, Mismatches: 14, Indels: 13
0.79 0.11 0.10
Matches are distributed among these distances:
40 31 0.30
41 4 0.04
42 55 0.53
43 12 0.12
44 1 0.01
ACGTcount: A:0.36, C:0.24, G:0.19, T:0.21
Consensus pattern (42 bp):
ATCTCCCTAAGCAGTAGTGGAGCAGACAAAACCACAGATCTT
Found at i:113084243 original size:12 final size:12
Alignment explanation
Indices: 113084228--113084252 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
113084218 AATATTTTTA
113084228 TATACATATTAT
1 TATACATATTAT
113084240 TATACATATTAT
1 TATACATATTAT
113084252 T
1 T
113084253 CTCATTGAGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.40, C:0.08, G:0.00, T:0.52
Consensus pattern (12 bp):
TATACATATTAT
Found at i:113091712 original size:23 final size:23
Alignment explanation
Indices: 113091686--113091771 Score: 66
Period size: 23 Copynumber: 3.7 Consensus size: 23
113091676 AATACAAAAA
113091686 AAAAATATAATAATAATAATAGT
1 AAAAATATAATAATAATAATAGT
* * * *
113091709 AAAAACACAATAGTAATAATAAT
1 AAAAATATAATAATAATAATAGT
* *
113091732 GAAAAGGTATTATAAT-ATAATAGT
1 -AAAA-ATATAATAATAATAATAGT
* *
113091756 AATAATGATGATAATA
1 AAAAAT-ATAATAATA
113091772 GTGGTATTAG
Statistics
Matches: 46, Mismatches: 13, Indels: 7
0.70 0.20 0.11
Matches are distributed among these distances:
22 1 0.02
23 29 0.63
24 11 0.24
25 5 0.11
ACGTcount: A:0.59, C:0.02, G:0.09, T:0.29
Consensus pattern (23 bp):
AAAAATATAATAATAATAATAGT
Found at i:113091759 original size:33 final size:38
Alignment explanation
Indices: 113091717--113091798 Score: 102
Period size: 33 Copynumber: 2.3 Consensus size: 38
113091707 GTAAAAACAC
113091717 AATAGTAATAATAATGA-AA-A-GGTATTA-TAAT-AT
1 AATAGTAATAATAATGATAATAGGGTATTAGTAATAAT
*
113091750 AATAGTAATAATGATGATAATAGTGGTATTAGTAATAAT
1 AATAGTAATAATAATGATAATAG-GGTATTAGTAATAAT
*
113091789 AATAATAATA
1 AATAGTAATA
113091799 GAAAATAATA
Statistics
Matches: 41, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
33 16 0.39
34 2 0.05
35 1 0.02
37 7 0.17
38 4 0.10
39 11 0.27
ACGTcount: A:0.52, C:0.00, G:0.13, T:0.34
Consensus pattern (38 bp):
AATAGTAATAATAATGATAATAGGGTATTAGTAATAAT
Found at i:113091807 original size:19 final size:18
Alignment explanation
Indices: 113091783--113091824 Score: 57
Period size: 19 Copynumber: 2.3 Consensus size: 18
113091773 TGGTATTAGT
*
113091783 AATAATAATAATAATAGAA
1 AATAATAACAATAATA-AA
*
113091802 AATAATAACAATATTAAA
1 AATAATAACAATAATAAA
113091820 AATAA
1 AATAA
113091825 CACTCTCTCC
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
18 7 0.33
19 14 0.67
ACGTcount: A:0.69, C:0.02, G:0.02, T:0.26
Consensus pattern (18 bp):
AATAATAACAATAATAAA
Found at i:113092223 original size:13 final size:13
Alignment explanation
Indices: 113092205--113092257 Score: 78
Period size: 13 Copynumber: 4.4 Consensus size: 13
113092195 GTGGTTAGGA
113092205 TGGTTTAGTGGGG
1 TGGTTTAGTGGGG
113092218 TGGTTTAGTGGGG
1 TGGTTTAGTGGGG
113092231 TGG--T--TGGGG
1 TGGTTTAGTGGGG
113092240 TGGTTTAGTGGGG
1 TGGTTTAGTGGGG
113092253 TGGTT
1 TGGTT
113092258 GGAGTGAAGA
Statistics
Matches: 36, Mismatches: 0, Indels: 8
0.82 0.00 0.18
Matches are distributed among these distances:
9 8 0.22
11 2 0.06
13 26 0.72
ACGTcount: A:0.06, C:0.00, G:0.55, T:0.40
Consensus pattern (13 bp):
TGGTTTAGTGGGG
Found at i:113092235 original size:35 final size:35
Alignment explanation
Indices: 113092189--113092257 Score: 111
Period size: 35 Copynumber: 2.0 Consensus size: 35
113092179 TTTGTAGGCA
113092189 AGTGGAGTGGTTAGGATGGTTTAGTGGGGTGGTTT
1 AGTGGAGTGGTTAGGATGGTTTAGTGGGGTGGTTT
* * *
113092224 AGTGGGGTGGTTGGGGTGGTTTAGTGGGGTGGTT
1 AGTGGAGTGGTTAGGATGGTTTAGTGGGGTGGTT
113092258 GGAGTGAAGA
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
35 31 1.00
ACGTcount: A:0.10, C:0.00, G:0.54, T:0.36
Consensus pattern (35 bp):
AGTGGAGTGGTTAGGATGGTTTAGTGGGGTGGTTT
Found at i:113092238 original size:22 final size:22
Alignment explanation
Indices: 113092213--113092259 Score: 94
Period size: 22 Copynumber: 2.1 Consensus size: 22
113092203 GATGGTTTAG
113092213 TGGGGTGGTTTAGTGGGGTGGT
1 TGGGGTGGTTTAGTGGGGTGGT
113092235 TGGGGTGGTTTAGTGGGGTGGT
1 TGGGGTGGTTTAGTGGGGTGGT
113092257 TGG
1 TGG
113092260 AGTGAAGATA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 25 1.00
ACGTcount: A:0.04, C:0.00, G:0.60, T:0.36
Consensus pattern (22 bp):
TGGGGTGGTTTAGTGGGGTGGT
Found at i:113097735 original size:3 final size:3
Alignment explanation
Indices: 113097727--113097775 Score: 55
Period size: 3 Copynumber: 16.7 Consensus size: 3
113097717 GCAAAGACGA
* * * *
113097727 AAT AAT AAT AAT GAT AAT AAT AAT AAT AAT GAT AAC GAT AAT AA- AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
113097774 AA
1 AA
113097776 ATCATTTTTT
Statistics
Matches: 37, Mismatches: 8, Indels: 2
0.79 0.17 0.04
Matches are distributed among these distances:
2 2 0.05
3 35 0.95
ACGTcount: A:0.63, C:0.02, G:0.06, T:0.29
Consensus pattern (3 bp):
AAT
Found at i:113097767 original size:18 final size:18
Alignment explanation
Indices: 113097727--113097770 Score: 70
Period size: 18 Copynumber: 2.4 Consensus size: 18
113097717 GCAAAGACGA
*
113097727 AATAATAATAATGATAAT
1 AATAATAATAATGATAAC
113097745 AATAATAATAATGATAAC
1 AATAATAATAATGATAAC
*
113097763 GATAATAA
1 AATAATAA
113097771 AATAAATCAT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.61, C:0.02, G:0.07, T:0.30
Consensus pattern (18 bp):
AATAATAATAATGATAAC
Found at i:113099667 original size:12 final size:12
Alignment explanation
Indices: 113099631--113099681 Score: 61
Period size: 12 Copynumber: 4.4 Consensus size: 12
113099621 AAATGGAAAG
113099631 ATATTTAACTTC
1 ATATTTAACTTC
**
113099643 ATA-TT-ACGAC
1 ATATTTAACTTC
*
113099653 ATATATAACTTC
1 ATATTTAACTTC
113099665 ATATTTAACTTC
1 ATATTTAACTTC
113099677 ATATT
1 ATATT
113099682 ATGATTCTTT
Statistics
Matches: 31, Mismatches: 6, Indels: 4
0.76 0.15 0.10
Matches are distributed among these distances:
10 6 0.19
11 3 0.10
12 22 0.71
ACGTcount: A:0.37, C:0.16, G:0.02, T:0.45
Consensus pattern (12 bp):
ATATTTAACTTC
Found at i:113099703 original size:16 final size:16
Alignment explanation
Indices: 113099679--113099713 Score: 61
Period size: 16 Copynumber: 2.2 Consensus size: 16
113099669 TTAACTTCAT
*
113099679 ATTATGATTCTTTGTA
1 ATTACGATTCTTTGTA
113099695 ATTACGATTCTTTGTA
1 ATTACGATTCTTTGTA
113099711 ATT
1 ATT
113099714 TATAACTTCA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.26, C:0.09, G:0.11, T:0.54
Consensus pattern (16 bp):
ATTACGATTCTTTGTA
Found at i:113100052 original size:10 final size:10
Alignment explanation
Indices: 113100037--113100088 Score: 59
Period size: 10 Copynumber: 5.1 Consensus size: 10
113100027 TAATTTTAGG
113100037 ATTTATTTTT
1 ATTTATTTTT
*
113100047 ATTTATCTTT
1 ATTTATTTTT
* *
113100057 AATTATCTTT
1 ATTTATTTTT
*
113100067 ATTTATTTGT
1 ATTTATTTTT
113100077 ATTTATCTTTT
1 ATTTAT-TTTT
113100088 A
1 A
113100089 GAATTTAATT
Statistics
Matches: 35, Mismatches: 6, Indels: 1
0.83 0.14 0.02
Matches are distributed among these distances:
10 31 0.89
11 4 0.11
ACGTcount: A:0.23, C:0.06, G:0.02, T:0.69
Consensus pattern (10 bp):
ATTTATTTTT
Found at i:113106349 original size:30 final size:30
Alignment explanation
Indices: 113106306--113106429 Score: 194
Period size: 30 Copynumber: 4.1 Consensus size: 30
113106296 TCCATATTTA
* * *
113106306 TGGAAAATCAAAGATATGAGTATCAAATAA
1 TGGAAAGTCAAAGATATGGGTATCAAATAT
*
113106336 TAGAAAGTCAAAGATATGGGTATCAAATAT
1 TGGAAAGTCAAAGATATGGGTATCAAATAT
113106366 TGGAAAGTCAAAGATATGGGTATCAAATAT
1 TGGAAAGTCAAAGATATGGGTATCAAATAT
*
113106396 TGGAAAGTCAAAGATATGGGTATCGAGATAT
1 TGGAAAGTCAAAGATATGGGTATC-AAATAT
113106427 TGG
1 TGG
113106430 CATAATAAAA
Statistics
Matches: 87, Mismatches: 6, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
30 79 0.91
31 8 0.09
ACGTcount: A:0.44, C:0.06, G:0.23, T:0.26
Consensus pattern (30 bp):
TGGAAAGTCAAAGATATGGGTATCAAATAT
Found at i:113106406 original size:15 final size:15
Alignment explanation
Indices: 113106358--113106407 Score: 57
Period size: 15 Copynumber: 3.3 Consensus size: 15
113106348 GATATGGGTA
113106358 TCAAATATTGGAAAG
1 TCAAATATTGGAAAG
* **
113106373 TCAAAGATATGGGTA-
1 TCAAATAT-TGGAAAG
113106388 TCAAATATTGGAAAG
1 TCAAATATTGGAAAG
113106403 TCAAA
1 TCAAA
113106408 GATATGGGTA
Statistics
Matches: 27, Mismatches: 6, Indels: 4
0.73 0.16 0.11
Matches are distributed among these distances:
14 4 0.15
15 19 0.70
16 4 0.15
ACGTcount: A:0.46, C:0.08, G:0.20, T:0.26
Consensus pattern (15 bp):
TCAAATATTGGAAAG
Found at i:113110194 original size:103 final size:104
Alignment explanation
Indices: 113109951--113110215 Score: 426
Period size: 103 Copynumber: 2.6 Consensus size: 104
113109941 GTTGTACATA
** *
113109951 AAGGGGTTGCTGTGTGCTGATTCCCCGATTCATTGGTGGTGCTATGTGCGATATCCACCGTATCT
1 AAGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACCGTATCT
* **
113110016 TTGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCC
66 CTGAAATGAAAAAGGGGGTTGCTATGTGCTGATTCCCCC
*
113110055 GAGGGGTTGCTAAGTGCTGATTCCCCG-TTCATTGGTGGTGCTAAGTGCGATATCCACCGTATCT
1 AAGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACCGTATCT
113110119 CTGAAAT-AAAAAGGGGGTTGCTATGTGCTGATTCCCCC
66 CTGAAATGAAAAAGGGGGTTGCTATGTGCTGATTCCCCC
* * *
113110157 AAGGGGTTGCTAAGTGCTGATTCCCCGATTAAGTGGTGGTGCTAAGTGCGAGATCCACC
1 AAGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACC
113110216 AATAACGGTT
Statistics
Matches: 149, Mismatches: 11, Indels: 3
0.91 0.07 0.02
Matches are distributed among these distances:
102 55 0.37
103 70 0.47
104 24 0.16
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.30
Consensus pattern (104 bp):
AAGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACCGTATCT
CTGAAATGAAAAAGGGGGTTGCTATGTGCTGATTCCCCC
Found at i:113115464 original size:103 final size:104
Alignment explanation
Indices: 113115220--113115485 Score: 426
Period size: 103 Copynumber: 2.6 Consensus size: 104
113115210 GTTGTACATA
** *
113115220 AAGGGGTTGCTGTGTGCTGATTCCCCGATTCATTGGTGGTGCTATGTGCGATATCCACCGTATCT
1 AAGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACCGTATCT
* **
113115285 TTGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCC
66 CTGAAATGAAAAAGGGGGTTGCTATGTGCTGATTCCCCC
* *
113115324 GAGGGGTTGCTAAGTGCTGATTCCCCGGTTCATTGGTGGTGCTAAGTGCGATATCCACCGTATCT
1 AAGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACCGTATCT
113115389 CTGAAAT-AAAAAGGGGGTTGCTATGTGCTGATTCCCCC
66 CTGAAATGAAAAAGGGGGTTGCTATGTGCTGATTCCCCC
* * *
113115427 AAGGGGTTGCTAAGTGCTGATTCCCCGATTAAGTGGTGGTGCTAAGTGCGAGATCCACC
1 AAGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACC
113115486 AATAACGGTT
Statistics
Matches: 149, Mismatches: 13, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
103 83 0.56
104 66 0.44
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.30
Consensus pattern (104 bp):
AAGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACCGTATCT
CTGAAATGAAAAAGGGGGTTGCTATGTGCTGATTCCCCC
Found at i:113118973 original size:15 final size:15
Alignment explanation
Indices: 113118953--113119060 Score: 69
Period size: 15 Copynumber: 7.2 Consensus size: 15
113118943 TTTATAGAAA
113118953 ATCAAAGATATGGGT
1 ATCAAAGATATGGGT
* * **
113118968 ATCAAATA-ATAGAA
1 ATCAAAGATATGGGT
113118982 AGTCAAAGATATGGGT
1 A-TCAAAGATATGGGT
* * **
113118998 ATCAAATAT-TAGAA
1 ATCAAAGATATGGGT
113119012 AGTCAAAGATATGGGT
1 A-TCAAAGATATGGGT
* **
113119028 ATCAAATAT-TGGAA
1 ATCAAAGATATGGGT
113119042 AGTCAAAGATATGGGT
1 A-TCAAAGATATGGGT
113119058 ATC
1 ATC
113119061 GAGATATTGG
Statistics
Matches: 65, Mismatches: 22, Indels: 12
0.66 0.22 0.12
Matches are distributed among these distances:
14 11 0.17
15 43 0.66
16 11 0.17
ACGTcount: A:0.45, C:0.07, G:0.21, T:0.26
Consensus pattern (15 bp):
ATCAAAGATATGGGT
Done.