Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A06
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 115140250
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2234201 characters in sequence are not A, C, G, or T
File 344 of 345
Found at i:114510505 original size:19 final size:19
Alignment explanation
Indices: 114510481--114510519 Score: 78
Period size: 19 Copynumber: 2.1 Consensus size: 19
114510471 CTAAAACATG
114510481 TGATGAAATGATATATCAC
1 TGATGAAATGATATATCAC
114510500 TGATGAAATGATATATCAC
1 TGATGAAATGATATATCAC
114510519 T
1 T
114510520 AGTTTTTCTT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.41, C:0.10, G:0.15, T:0.33
Consensus pattern (19 bp):
TGATGAAATGATATATCAC
Found at i:114514609 original size:28 final size:28
Alignment explanation
Indices: 114514577--114514641 Score: 112
Period size: 28 Copynumber: 2.3 Consensus size: 28
114514567 GTGTTGGCTA
114514577 AATTGAAGTATGTAATCATAATTTCAAT
1 AATTGAAGTATGTAATCATAATTTCAAT
*
114514605 AATTGAAGTATGTAATCATTATTTCAAT
1 AATTGAAGTATGTAATCATAATTTCAAT
*
114514633 TATTGAAGT
1 AATTGAAGT
114514642 GAAAAGAAAA
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
28 35 1.00
ACGTcount: A:0.40, C:0.06, G:0.12, T:0.42
Consensus pattern (28 bp):
AATTGAAGTATGTAATCATAATTTCAAT
Found at i:114516805 original size:2 final size:2
Alignment explanation
Indices: 114516800--114516918 Score: 82
Period size: 2 Copynumber: 61.0 Consensus size: 2
114516790 TGTTATAAGG
* * * *
114516800 GA GA GA GA GA GG GA GA GG GA GA GG GA GA GA GA GG GA GA GA GA
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
* * * * * * *
114516842 GA GA G- GG GG GT G- GA GA GA GA GA GA GA GG GG GA GA G- GG GG
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
* * * *
114516881 GA GG GA GA GG GA GA GG GA GA GA GA AA GA GA GA GA GA GA
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
114516919 TTAAAATTAA
Statistics
Matches: 94, Mismatches: 20, Indels: 6
0.78 0.17 0.05
Matches are distributed among these distances:
1 3 0.03
2 91 0.97
ACGTcount: A:0.38, C:0.00, G:0.61, T:0.01
Consensus pattern (2 bp):
GA
Found at i:114516815 original size:6 final size:6
Alignment explanation
Indices: 114516797--114516901 Score: 99
Period size: 6 Copynumber: 17.3 Consensus size: 6
114516787 AATTGTTATA
*
114516797 AGGGAG AGAGAG AGGGAG AGGGAG AGGGAG A--GAG AGGGAG AGAGAGAG
1 AGGGAG AGGGAG AGGGAG AGGGAG AGGGAG AGGGAG AGGGAG AG-G-GAG
* * * * *
114516845 AGGG-G GGTGGAG AGAGAG AGAGAG GGGGAG AGGGGGG AGGGAG AGGGAG
1 AGGGAG AG-GGAG AGGGAG AGGGAG AGGGAG A-GGGAG AGGGAG AGGGAG
114516894 AGGGAG AG
1 AGGGAG AG
114516902 AGAAAGAGAG
Statistics
Matches: 82, Mismatches: 10, Indels: 14
0.77 0.09 0.13
Matches are distributed among these distances:
4 4 0.05
5 2 0.02
6 62 0.76
7 9 0.11
8 5 0.06
ACGTcount: A:0.34, C:0.00, G:0.65, T:0.01
Consensus pattern (6 bp):
AGGGAG
Found at i:114517213 original size:20 final size:19
Alignment explanation
Indices: 114517190--114517249 Score: 54
Period size: 18 Copynumber: 3.2 Consensus size: 19
114517180 TTTTAAAAAA
114517190 TTTAAAAATATTTTTATAAT
1 TTTAAAAATATTTTTAT-AT
* *
114517210 TTT-AATA-AGTTTTAT-T
1 TTTAAAAATATTTTTATAT
114517226 TTTAAAAAATAATTTTTATAT
1 TTT-AAAAAT-ATTTTTATAT
114517247 TTT
1 TTT
114517250 TTAAAATTTT
Statistics
Matches: 31, Mismatches: 4, Indels: 9
0.70 0.09 0.20
Matches are distributed among these distances:
16 4 0.13
18 10 0.32
19 3 0.10
20 10 0.32
21 4 0.13
ACGTcount: A:0.40, C:0.00, G:0.02, T:0.58
Consensus pattern (19 bp):
TTTAAAAATATTTTTATAT
Found at i:114517251 original size:29 final size:30
Alignment explanation
Indices: 114517205--114517270 Score: 71
Period size: 29 Copynumber: 2.2 Consensus size: 30
114517195 AAATATTTTT
*
114517205 ATAATTTTAATAAGTTTT-ATTTTTAAAAA
1 ATAATTTTAATAAGTTTTAAATTTTAAAAA
* **
114517234 ATAATTTTTATATTTTTTAAAATTTTAAAAA
1 ATAATTTTAATAAGTTTT-AAATTTTAAAAA
*
114517265 TTAATT
1 ATAATT
114517271 ATTTGCTAAC
Statistics
Matches: 30, Mismatches: 5, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
29 15 0.50
31 15 0.50
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.55
Consensus pattern (30 bp):
ATAATTTTAATAAGTTTTAAATTTTAAAAA
Found at i:114518873 original size:42 final size:42
Alignment explanation
Indices: 114518810--114518936 Score: 170
Period size: 42 Copynumber: 3.0 Consensus size: 42
114518800 CTTCGTTTTC
** * *
114518810 TCGATGCCATAGTTCAACTATGGTCTTACACATCTTCACATAA
1 TCGATGCCATAGCCCAGCTATGGTCTTACACATATTCACAT-A
*
114518853 T-GATGCCATAGCCCAGCTATGGTCTTACACATATTCATATA
1 TCGATGCCATAGCCCAGCTATGGTCTTACACATATTCACATA
114518894 TCGATGCCATAGCCCAGCTATGGTCTTACACGA-A-TCACATA
1 TCGATGCCATAGCCCAGCTATGGTCTTACAC-ATATTCACATA
114518935 TC
1 TC
114518937 TCACTGATGC
Statistics
Matches: 76, Mismatches: 6, Indels: 6
0.86 0.07 0.07
Matches are distributed among these distances:
41 10 0.13
42 64 0.84
43 2 0.03
ACGTcount: A:0.29, C:0.27, G:0.14, T:0.30
Consensus pattern (42 bp):
TCGATGCCATAGCCCAGCTATGGTCTTACACATATTCACATA
Found at i:114518980 original size:88 final size:89
Alignment explanation
Indices: 114518853--114519020 Score: 214
Period size: 88 Copynumber: 1.9 Consensus size: 89
114518843 CTTCACATAA
* * *
114518853 TGATGCCATAGCCCAGCTATGGTCTTACACATATTCATATAT-CGATGCCATAGCCCAGCTATGG
1 TGATGCCATAGCCCAGATATGGTCTTACACATATGCATATATCCGATGCCATAGCCCAGATATGG
114518917 TCTTACACGAATCACATATCTCAC
66 TCTTACACGAATCACATATCTCAC
* * *
114518941 TGATGCCATATCCCAGATATGGTCTTATACAGTA-GCATATATCACACCGATGCCATATCCCAGA
1 TGATGCCATAGCCCAGATATGGTCTTACACA-TATGCATATAT----CCGATGCCATAGCCCAGA
*
114519005 TATGGTCTTATACGAA
61 TATGGTCTTACACGAA
114519021 AATCACTTGT
Statistics
Matches: 67, Mismatches: 7, Indels: 7
0.83 0.09 0.09
Matches are distributed among these distances:
88 35 0.52
89 2 0.03
93 30 0.45
ACGTcount: A:0.30, C:0.26, G:0.15, T:0.29
Consensus pattern (89 bp):
TGATGCCATAGCCCAGATATGGTCTTACACATATGCATATATCCGATGCCATAGCCCAGATATGG
TCTTACACGAATCACATATCTCAC
Found at i:114518998 original size:47 final size:46
Alignment explanation
Indices: 114518895--114519020 Score: 171
Period size: 47 Copynumber: 2.7 Consensus size: 46
114518885 ATTCATATAT
* * * * *
114518895 CGATGCCATAGCCCAGCTATGGTCTTACACGAATCACATATCTCAC
1 CGATGCCATATCCCAGATATGGTCTTATACGAAGCACATATCACAC
* * *
114518941 TGATGCCATATCCCAGATATGGTCTTATACAGTAGCATATATCACAC
1 CGATGCCATATCCCAGATATGGTCTTATAC-GAAGCACATATCACAC
114518988 CGATGCCATATCCCAGATATGGTCTTATACGAA
1 CGATGCCATATCCCAGATATGGTCTTATACGAA
114519021 AATCACTTGT
Statistics
Matches: 69, Mismatches: 10, Indels: 2
0.85 0.12 0.02
Matches are distributed among these distances:
46 28 0.41
47 41 0.59
ACGTcount: A:0.30, C:0.27, G:0.16, T:0.27
Consensus pattern (46 bp):
CGATGCCATATCCCAGATATGGTCTTATACGAAGCACATATCACAC
Found at i:114519035 original size:7 final size:7
Alignment explanation
Indices: 114519023--114519051 Score: 58
Period size: 7 Copynumber: 4.1 Consensus size: 7
114519013 TATACGAAAA
114519023 TCACTTG
1 TCACTTG
114519030 TCACTTG
1 TCACTTG
114519037 TCACTTG
1 TCACTTG
114519044 TCACTTG
1 TCACTTG
114519051 T
1 T
114519052 AGCTGAAGCT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 22 1.00
ACGTcount: A:0.14, C:0.28, G:0.14, T:0.45
Consensus pattern (7 bp):
TCACTTG
Found at i:114519093 original size:31 final size:31
Alignment explanation
Indices: 114519058--114519198 Score: 201
Period size: 31 Copynumber: 4.5 Consensus size: 31
114519048 TTGTAGCTGA
* * *
114519058 AGCTACCACTATTCACTGATCAGGTAGTCGC
1 AGCTACCACTTTTCACTGATCAGGTAGCCGG
* *
114519089 AGCTACCATTTTTCACTGACCAGGTAGCCGG
1 AGCTACCACTTTTCACTGATCAGGTAGCCGG
114519120 AGCTACCACTTTTCACTGATCAGGTAGCCGG
1 AGCTACCACTTTTCACTGATCAGGTAGCCGG
* * * *
114519151 AACTATCACTTTTCACTGATCAGGTAGCTGA
1 AGCTACCACTTTTCACTGATCAGGTAGCCGG
114519182 AGCTACCACTTTTCACT
1 AGCTACCACTTTTCACT
114519199 TGTCATTTGT
Statistics
Matches: 97, Mismatches: 13, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
31 97 1.00
ACGTcount: A:0.25, C:0.28, G:0.18, T:0.28
Consensus pattern (31 bp):
AGCTACCACTTTTCACTGATCAGGTAGCCGG
Found at i:114519280 original size:50 final size:51
Alignment explanation
Indices: 114519174--114519302 Score: 199
Period size: 50 Copynumber: 2.5 Consensus size: 51
114519164 CACTGATCAG
* * *
114519174 GTAGCTGAAGCTACCACTTTTCACTTGTCATTTGTCATTGATCAGATAAGT
1 GTAGCCGAAGCTATCACTTATCACTTGTCATTTGTCATTGATCAGATAAGT
*
114519225 GTAGCCGAAGCTATCACTTATCACTT-TCACTTT-TCCTTGATCAGATAAGT
1 GTAGCCGAAGCTATCACTTATCACTTGTCA-TTTGTCATTGATCAGATAAGT
114519275 GTAGCCGAAGCTATCACTTATCACTTGT
1 GTAGCCGAAGCTATCACTTATCACTTGT
114519303 TGTCATGGTC
Statistics
Matches: 72, Mismatches: 4, Indels: 4
0.90 0.05 0.05
Matches are distributed among these distances:
50 45 0.62
51 27 0.38
ACGTcount: A:0.26, C:0.22, G:0.16, T:0.36
Consensus pattern (51 bp):
GTAGCCGAAGCTATCACTTATCACTTGTCATTTGTCATTGATCAGATAAGT
Found at i:114525247 original size:50 final size:51
Alignment explanation
Indices: 114525170--114525298 Score: 206
Period size: 50 Copynumber: 2.5 Consensus size: 51
114525160 GACCATGGCA
* *
114525170 ACAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGATAAGTG
1 ACAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATG
*
114525221 A-AAGTGATAAGTAATAGCTTCGGCTACACTTATCTGATCAAGGACAAATG
1 ACAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATG
* *
114525271 ACAAGTGAAAAGTGGTAGCTTCGGCTAC
1 ACAAGTGATAAGTGATAGCTTCGGCTAC
114525299 CTGATCAGTG
Statistics
Matches: 71, Mismatches: 6, Indels: 2
0.90 0.08 0.03
Matches are distributed among these distances:
50 47 0.66
51 24 0.34
ACGTcount: A:0.35, C:0.16, G:0.23, T:0.26
Consensus pattern (51 bp):
ACAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATG
Found at i:114525312 original size:31 final size:31
Alignment explanation
Indices: 114525274--114525422 Score: 208
Period size: 31 Copynumber: 4.8 Consensus size: 31
114525264 ACAAATGACA
114525274 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
* * *
114525305 AGTGAAAAGTGGTAGTTTCTGCTGCCTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
* * *
114525336 AGTGAAAAATGGTAGCTCCGACTACCTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
* * *
114525367 AATGAAAAATGGTAGCTCCGGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
*
114525398 AGTGAATAGTGGTAGCTTCGGCTAC
1 AGTGAAAAGTGGTAGCTTCGGCTAC
114525423 AAGTGACAAG
Statistics
Matches: 103, Mismatches: 15, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
31 103 1.00
ACGTcount: A:0.28, C:0.19, G:0.27, T:0.26
Consensus pattern (31 bp):
AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
Found at i:114525510 original size:47 final size:46
Alignment explanation
Indices: 114525440--114525604 Score: 151
Period size: 47 Copynumber: 3.7 Consensus size: 46
114525430 AAGTGATTTC
* * *
114525440 CGTATAAGACCATATGTGGGATATGGCATCGGTGTGATATATGCTA
1 CGTATAAGACCATATCTGGGATATGGCATCGGTGAGATATATGATA
* * * *
114525486 CTGTATAAGACCATATCTGGGATATTGCATCAGTGAGATATGTGATT
1 C-GTATAAGACCATATCTGGGATATGGCATCGGTGAGATATATGATA
* * *
114525533 CGTGTAAGACCATAGCTGGGCTATGGCATC-----GATATATGAATA
1 CGTATAAGACCATATCTGGGATATGGCATCGGTGAGATATATG-ATA
* * * *
114525575 TGTGTAAGACCATAGCTGGGCTATGGCATC
1 CGTATAAGACCATATCTGGGATATGGCATC
114525605 ATTATGTGAA
Statistics
Matches: 103, Mismatches: 14, Indels: 8
0.82 0.11 0.06
Matches are distributed among these distances:
41 7 0.07
42 31 0.30
46 26 0.25
47 39 0.38
ACGTcount: A:0.28, C:0.15, G:0.27, T:0.30
Consensus pattern (46 bp):
CGTATAAGACCATATCTGGGATATGGCATCGGTGAGATATATGATA
Found at i:114525592 original size:42 final size:43
Alignment explanation
Indices: 114525534--114525648 Score: 171
Period size: 42 Copynumber: 2.7 Consensus size: 43
114525524 TATGTGATTC
*
114525534 GTGTAAGACCATAGCTGGGCTATGGCATCGA-TATATGAATAT
1 GTGTAAGACCATAGCTGGGCTATGGCATCGATTATATGAAGAT
*
114525576 GTGTAAGACCATAGCTGGGCTATGGCATC-ATTATGTGAAGAT
1 GTGTAAGACCATAGCTGGGCTATGGCATCGATTATATGAAGAT
* **
114525618 GTGTAAGACCATAGTTGAACTATGGCATCGA
1 GTGTAAGACCATAGCTGGGCTATGGCATCGA
114525649 GAAAACGAAG
Statistics
Matches: 66, Mismatches: 5, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
41 1 0.02
42 64 0.97
43 1 0.02
ACGTcount: A:0.30, C:0.15, G:0.27, T:0.28
Consensus pattern (43 bp):
GTGTAAGACCATAGCTGGGCTATGGCATCGATTATATGAAGAT
Found at i:114528634 original size:23 final size:23
Alignment explanation
Indices: 114528604--114528652 Score: 98
Period size: 23 Copynumber: 2.1 Consensus size: 23
114528594 TTGAAAAATG
114528604 AAAGAAAATAAAATATAACATTT
1 AAAGAAAATAAAATATAACATTT
114528627 AAAGAAAATAAAATATAACATTT
1 AAAGAAAATAAAATATAACATTT
114528650 AAA
1 AAA
114528653 AAATGTACAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 26 1.00
ACGTcount: A:0.67, C:0.04, G:0.04, T:0.24
Consensus pattern (23 bp):
AAAGAAAATAAAATATAACATTT
Found at i:114540103 original size:311 final size:312
Alignment explanation
Indices: 114539529--114540153 Score: 897
Period size: 311 Copynumber: 2.0 Consensus size: 312
114539519 CTTAAAACTG
* *
114539529 AAAATAAGATTTCCAAACATGGATAATCATCTTATTTTAATCGAAAAGAAAAAGCAAAAAAAAAA
1 AAAATAAGATTTCCAAACATGGATAATCATCTCATTTTAATCAAAAAGAAAAAGCAAAAAAAAAA
* *
114539594 ATTCCTATTCTTAATTACGTGAAAAAAAATAAAAAATTAATAATCAACTTACATCTACTAAATTA
66 ATTCCTATTCTTAATTAAGTG-----AAATAAAAAATTAATAAACAACTTACATCTACTAAATTA
*
114539659 TCCATCGCAAACAACAACAGGCAAACTTTATGACTTCAAATTTCATATTTCACTCAAACTTGCAG
126 TCCATCGCAAACAACAACAGACAAACTTTATGACTTCAAATTTCATATTTCACTCAAACTTGCAG
*
114539724 AGTATATTTAATTTTTAACAATACATAGAGATTAACAACTAATTTTCAACTCAAGTAAGCAAGGA
191 AGCATATTTAATTTTTAACAATACATAGAGATTAACAACTAATTTTCAACTCAAGTAAGCAAGGA
* *
114539789 AATGACCAT-AA-AAAAATTTATGAAGAATGCAACAATAACGTATCATCTAAACTAAA
256 AATGACCATCAACAAAAA-TAATGAAGAATGCAACAATAACGTATCATATAAACTAAA
*
114539845 AAAATAAGATTTCCAAACATGGATAATGATCTCATTTTAATCAAAAAGAAAAAGCAAAAATAAAA
1 AAAATAAGATTTCCAAACATGGATAATCATCTCATTTTAATCAAAAAGAAAAAGC---AA-AAAA
* **
114539910 AAAAATTCCTATT-TCTAATTAAGTG-AA-AAACAATTAATAAACCTCTTACATCTACTAAATTA
62 AAAAATTCCTATTCT-TAATTAAGTGAAATAAAAAATTAATAAACAACTTACATCTACTAAATTA
* * * *
114539972 TCCATCGCAAGCAAC-ATAGACAAACTTTATGACTTTAAA-TTCATAATTTCACT-GAACTTGCA
126 TCCATCGCAAACAACAACAGACAAACTTTATGACTTCAAATTTCAT-ATTTCACTCAAACTTGCA
* * *
114540034 GAGCATATTTAATTTTTAACAATATATAGAGATTAACAACTAATTTTGAACTCAAGTAAGCATGG
190 GAGCATATTTAATTTTTAACAATACATAGAGATTAACAACTAATTTTCAACTCAAGTAAGCAAGG
* *
114540099 AAATGACGATCAACAAAAATAATGAAGAATGCAACAATAACGTATCGTATAAACT
255 AAATGACCATCAACAAAAATAATGAAGAATGCAACAATAACGTATCATATAAACT
114540154 GAGATTCAAG
Statistics
Matches: 280, Mismatches: 21, Indels: 20
0.87 0.07 0.06
Matches are distributed among these distances:
311 83 0.30
312 64 0.23
313 50 0.18
314 2 0.01
316 52 0.19
319 3 0.01
320 26 0.09
ACGTcount: A:0.48, C:0.15, G:0.09, T:0.28
Consensus pattern (312 bp):
AAAATAAGATTTCCAAACATGGATAATCATCTCATTTTAATCAAAAAGAAAAAGCAAAAAAAAAA
ATTCCTATTCTTAATTAAGTGAAATAAAAAATTAATAAACAACTTACATCTACTAAATTATCCAT
CGCAAACAACAACAGACAAACTTTATGACTTCAAATTTCATATTTCACTCAAACTTGCAGAGCAT
ATTTAATTTTTAACAATACATAGAGATTAACAACTAATTTTCAACTCAAGTAAGCAAGGAAATGA
CCATCAACAAAAATAATGAAGAATGCAACAATAACGTATCATATAAACTAAA
Found at i:114555730 original size:29 final size:30
Alignment explanation
Indices: 114555698--114555762 Score: 89
Period size: 31 Copynumber: 2.2 Consensus size: 30
114555688 AAACTTCATT
114555698 TATAAAATTACACA-AAA-TCAAAATTTATA
1 TATAAAATTACACATAAACT-AAAATTTATA
*
114555727 TATATAATTACACATTAAACTAAAATTTATA
1 TATAAAATTACACA-TAAACTAAAATTTATA
114555758 TATAA
1 TATAA
114555763 TTTTATGATT
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
29 13 0.42
31 17 0.55
32 1 0.03
ACGTcount: A:0.55, C:0.09, G:0.00, T:0.35
Consensus pattern (30 bp):
TATAAAATTACACATAAACTAAAATTTATA
Found at i:114563844 original size:87 final size:87
Alignment explanation
Indices: 114563467--114563905 Score: 364
Period size: 87 Copynumber: 4.8 Consensus size: 87
114563457 CATCGATTAT
** * * *
114563467 TTTGTTGATTTTCGATTTTTTTCCCTAATTTTCTCGTCTAAGAG-AAAATATTGCTAAAAGAAAA
1 TTTGTTGATTTTCGA-TTTTCCCCCTAATTTTCCCGTCTCAGAGAAAAATATTACTAAAAG-AAA
114563531 CAACGGAAAAAAAAATCCTAGATCCAGAAA
64 -AAC---AAAAAAAA--CTAGATCCAGAAA
* * * * *
114563561 TTTGTT-AATTCCAATTTTCCCCCTTATCTTCCCGTCTCAGAGAAAAATATTACTAAAAGAAAAA
1 TTTGTTGATTTTCGATTTTCCCCCTAATTTTCCCGTCTCAGAGAAAAATATTACTAAAAGAAAAA
* * * *
114563625 CAACAGGGAAAAGAATCGAAAGCCATAAA
66 C-A-A---AAAA-AA-CTAGATCCAGAAA
* * *
114563654 TTTGTTAATTTTCAAATTTT-CCCCTAATTTTCCCGTCTCAGAGAAAAAATATTACCAAAAGAAA
1 TTTGTTGATTTTC-GATTTTCCCCCTAATTTTCCCGTCTCAGAG-AAAAATATTACTAAAAGAAA
* *
114563718 AACAGGAAAAAAAAAATACCCTAGCTGCAGAAA
64 AAC------AAAAAAA-A--CTAGATCCAGAAA
*
114563751 TTTGTTGATTTTCGATTTTCCCCCCTAATTTTCCCGTCTTAGAGAAAAATATTACTAAAAGAAAA
1 TTTGTTGATTTTCGATTTT-CCCCCTAATTTTCCCGTCTCAGAGAAAAATATTACTAAAAGAAAA
*
114563816 ACATAAAAAA-TAGATCCAGAAA
65 ACAAAAAAAACTAGATCCAGAAA
* * * * *
114563838 TCTGTTGATTTTCGATTTTTCCCCCTAATTTTTCCGTCTTAGACAAAAAAATTACTAAAAGAAAA
1 TTTGTTGATTTTCGA-TTTTCCCCCTAATTTTCCCGTCTCAGAGAAAAATATTACTAAAAGAAAA
114563903 ACA
65 ACA
114563906 TGAAGAAAAA
Statistics
Matches: 288, Mismatches: 38, Indels: 45
0.78 0.10 0.12
Matches are distributed among these distances:
87 69 0.24
88 4 0.01
89 2 0.01
90 2 0.01
91 9 0.03
92 25 0.09
93 39 0.14
94 33 0.11
95 29 0.10
96 10 0.03
97 41 0.14
98 22 0.08
99 1 0.00
100 2 0.01
ACGTcount: A:0.41, C:0.18, G:0.11, T:0.31
Consensus pattern (87 bp):
TTTGTTGATTTTCGATTTTCCCCCTAATTTTCCCGTCTCAGAGAAAAATATTACTAAAAGAAAAA
CAAAAAAAACTAGATCCAGAAA
Found at i:114563948 original size:185 final size:185
Alignment explanation
Indices: 114563469--114563950 Score: 516
Period size: 184 Copynumber: 2.6 Consensus size: 185
114563459 TCGATTATTT
* * * *
114563469 TGTTGATTTTCGATTTTTTTCCCTAA-TTTTCTCGTCTAAGAGAAAATATTGCTAAAAG-AAAAC
1 TGTTGATTTTCGA-TTTTTCCCCTAATTTTTC-CGTCTAAGAAAAAAAATTACTAAAAGAAAAAC
* * * * * *
114563532 A-ACGGAAAAAAAAATCCTAGATCCAGAAATTTGTT-AATTCCAATTTTCCCCCTTATCTTCCCG
64 AGA-AGAAAAAAAAACCCTAGATCCAGAAATTTGTTGATTTTCGATTTTCCCCCTAATCTTCCCG
* *
114563595 TCTCAGAGAAAAATATTACTAAAAGAAAAACAACAGGGAAAAGAATCGAAAGCCATAAATT
128 TCTCAGAGAAAAATATTACTAAAAG-AAAACAACA-GGAAAAGAATC-AAAGCCAGAAATC
* * * * * *
114563656 TGTTAATTTTCAAATTTTCCCCTAATTTTCCCGTCTCAGAGAAAAAATATTACCAAAAGAAAAAC
1 TGTTGATTTTCGATTTTTCCCCTAATTTTTCCGTCT-A-AGAAAAAAAATTACTAAAAGAAAAAC
* * *
114563721 AGGAA-AAAAAAAATACCCTAGCTGCAGAAATTTGTTGATTTTCGATTTTCCCCCCTAATTTTCC
64 A-GAAGAAAAAAAA-ACCCTAGATCCAGAAATTTGTTGATTTTCGATTTT-CCCCCTAATCTTCC
* * * *
114563785 CGTCTTAGAGAAAAATATTACTAAAAG-AAA-AACA-TAAAA-AAT-AGATCCAGAAATC
126 CGTCTCAGAGAAAAATATTACTAAAAGAAAACAACAGGAAAAGAATCAAAGCCAGAAATC
*
114563840 TGTTGATTTTCGATTTTTCCCCCTAATTTTTCCGTCTTAGACAAAAAAATTACTAAAAGAAAAAC
1 TGTTGATTTTCGATTTTT-CCCCTAATTTTTCCGTCTAAGA-AAAAAAATTACTAAAAGAAAAAC
*
114563905 ATGAAGAAAAAAAAACCTCTAGATCCAGAAATCTGTTGATTTTCGA
64 A-GAAGAAAAAAAAACC-CTAGATCCAGAAATTTGTTGATTTTCGA
114563951 AATTTTTTTC
Statistics
Matches: 248, Mismatches: 34, Indels: 28
0.80 0.11 0.09
Matches are distributed among these distances:
183 3 0.01
184 52 0.21
185 50 0.20
186 18 0.07
187 20 0.08
188 17 0.07
189 18 0.07
190 22 0.09
191 10 0.04
192 38 0.15
ACGTcount: A:0.41, C:0.18, G:0.11, T:0.30
Consensus pattern (185 bp):
TGTTGATTTTCGATTTTTCCCCTAATTTTTCCGTCTAAGAAAAAAAATTACTAAAAGAAAAACAG
AAGAAAAAAAAACCCTAGATCCAGAAATTTGTTGATTTTCGATTTTCCCCCTAATCTTCCCGTCT
CAGAGAAAAATATTACTAAAAGAAAACAACAGGAAAAGAATCAAAGCCAGAAATC
Found at i:114571108 original size:13 final size:13
Alignment explanation
Indices: 114571090--114571116 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
114571080 GTGTACTTTG
114571090 ATAGACAAAATTA
1 ATAGACAAAATTA
114571103 ATAGACAAAATTA
1 ATAGACAAAATTA
114571116 A
1 A
114571117 GGTAAAAGTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.63, C:0.07, G:0.07, T:0.22
Consensus pattern (13 bp):
ATAGACAAAATTA
Found at i:114576949 original size:30 final size:30
Alignment explanation
Indices: 114576915--114576975 Score: 113
Period size: 30 Copynumber: 2.0 Consensus size: 30
114576905 AGAAATTCCA
*
114576915 GGTCTAATTATTGTTTTAGTCCTTTATTAT
1 GGTCTAATTATTGTTTTAATCCTTTATTAT
114576945 GGTCTAATTATTGTTTTAATCCTTTATTAT
1 GGTCTAATTATTGTTTTAATCCTTTATTAT
114576975 G
1 G
114576976 TTGAAACTTG
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.21, C:0.10, G:0.13, T:0.56
Consensus pattern (30 bp):
GGTCTAATTATTGTTTTAATCCTTTATTAT
Found at i:114583132 original size:44 final size:45
Alignment explanation
Indices: 114583037--114583151 Score: 135
Period size: 44 Copynumber: 2.6 Consensus size: 45
114583027 ACAGGACAGA
* *
114583037 ACAGAAATGAGCCATGTAAGTCTATATTAGAAATATGGATTTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATTA-AAATATGGATTTGGAG
* *
114583083 ACAGGATTGAGCCATGTAAGTCCATATT-ATATATGGCA-TTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATTAAAATATGG-ATTTGGAG
* **
114583127 ACAGGAATAATTCATGTAAGTCCAT
1 ACAGGAATGAGCCATGTAAGTCCAT
114583152 GTCAAAGACA
Statistics
Matches: 60, Mismatches: 8, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
44 34 0.57
45 1 0.02
46 25 0.42
ACGTcount: A:0.37, C:0.12, G:0.23, T:0.29
Consensus pattern (45 bp):
ACAGGAATGAGCCATGTAAGTCCATATTAAAATATGGATTTGGAG
Found at i:114585846 original size:374 final size:372
Alignment explanation
Indices: 114585389--114586494 Score: 1509
Period size: 374 Copynumber: 2.9 Consensus size: 372
114585379 ATTCGTCAAC
* * * *
114585389 TAGCTGAAATTCAAGAACAAATGGTATCTTTCTTTCTTTCTTTCTGTTTTTGTTTATTAATTTTT
1 TAGCTGAAATCCAAGAACAAAT-GTA---TTATATCTTTCTTTCTGTTTTTGTTTATTAATTTTG
*
114585454 ATTTGATAATTATGGATAATTTGATCAATCTTTTTACTCTTGTTTTAAGAATTTGAAGTTGTTTT
62 ATTTGATAATTGTGGATAATTTGATCAATCTTTTTACTCTTGTTTTAAGAATTTGAAGTTGTTTT
*
114585519 AGTTCATATATATATATATATTAGAAGTTAGCTATGCCCTATATAATAATTTTTTTTTCTATTAG
127 AGTTC--ATATATATA-A-ATTAGAAGTTAGCTATGCCCTATATAA-AATTATTTTTTCTATTAG
*
114585584 CTGAAATCCAAGAACAAATGGTTTCTTTCTTTCTTTCTGTTTTTTTTTTTTGTTAATTTTGATTT
187 CTGAAATCCAAGAACAAATGGTTTCTTTCTTTCTTTCTGTTTTTTTTTTTTATTAATTTTGATTT
114585649 GATAATTGTGGATAATTTGATCAAATTTTTTTACTCTTGTTTTAAGAATTTGAAGTTGTTTTAGT
252 GATAATTGTGGATAATTTGATC-AATTTTTTTACTCTTGTTTTAAGAATTTGAAGTTGTTTTAGT
* * *
114585714 TCATATATAAAATTAGAAGTTAGCTACGCCCTTATGTAAAG-AATTTTTTTTTCTAT
316 TCATATATAAAATTAGAAGTTAGCTACGCCCATATATAAAGAAATTCTTTTTTCTAT
* *
114585770 TAGCTGAAATTCAAGAACAAATG-A-TATAT-TTTCTTTCTGTTTTTGTTTATTAGTTTTGATTT
1 TAGCTGAAATCCAAGAACAAATGTATTATATCTTTCTTTCTGTTTTTGTTTATTAATTTTGATTT
*
114585832 GATAATTGTGGATAATTTGATCAATCTTTTAACTCTTGTTTTAAGAATTTGAAGTTGTTTTAGTT
66 GATAATTGTGGATAATTTGATCAATCTTTTTACTCTTGTTTTAAGAATTTGAAGTTGTTTTAGTT
* * **
114585897 CATATATA-AAATTAGAAGTTAGCTGTGCTTCATAGGCCATATGTAAAGAAAATTTTTTCTATTA
131 CATATATATAAATTAGAAGTTA-----GC-T-AT--GCCCTATATAAA-ATTATTTTTTCTATTA
* *
114585961 GCTGAAATCCAAGAACAAATGGTATCTTTCTTTCTTTCTG---TTTTTGTTTATTAATTTTGATT
186 GCTGAAATCCAAGAACAAATGGTTTCTTTCTTTCTTTCTGTTTTTTTTTTTTATTAATTTTGATT
* *
114586023 TGATAATTGTGGATAATTTGATCAATTTTTTTACTCTTGTTTTAAGAATTTGAAATTGTTTTCGT
251 TGATAATTGTGGATAATTTGATCAATTTTTTTACTCTTGTTTTAAGAATTTGAAGTTGTTTTAGT
*
114586088 TCATATAT-AAATTAGAAGTTAGCTACGCCCATATATAAAGAAATTCTTTTTTGTAT
316 TCATATATAAAATTAGAAGTTAGCTACGCCCATATATAAAGAAATTCTTTTTTCTAT
* *
114586144 TAGCTGAAATCCAAGAACAAATGTTATCTTTCTTTCTTTCTTTCTGTTTTTGTTTATTAATTTTG
1 TAGCTGAAATCCAAGAACAAATG-TA---TTATATCTTTCTTTCTGTTTTTGTTTATTAATTTTG
* *
114586209 ATTTGATAATTGTGGATAATTTGATCAATTTTTTTACTCTTGTTTTAAGAATTTGAAATTGTTTT
62 ATTTGATAATTGTGGATAATTTGATCAATCTTTTTACTCTTGTTTTAAGAATTTGAAGTTGTTTT
* * * * *
114586274 CGTTC--ATATATAAATTAGAAGTTAGCTATGCCCATATATAAAGA-AATTCCTTTCTGTATCAT
127 AGTTCATATATATAAATTAGAAGTTAGCTATGCCC-TATATAAA-ATTATT--TTT-TCTATTAG
*
114586336 CTGAAATCCAAGAACAAAT-GTTATCTTTCTTTCTTTCTTTCTTTCTGTTTTTGTTTATTAATTT
187 CTGAAATCCAAGAACAAATGGTT-TCTTTCTTTCTTTC--TGTTT-T-TTTTT-TTTATTAATTT
*
114586400 TGATTTGATAATTGTGGATAATTTGATCAATCTTTTTACTCTTGTTTTAAGAATTTGAAGTTGTT
246 TGATTTGATAATTGTGGATAATTTGATCAATTTTTTTACTCTTGTTTTAAGAATTTGAAGTTGTT
114586465 TTAGTTCATATATAAAATTAGAAGTTAGCT
311 TTAGTTCATATATAAAATTAGAAGTTAGCT
114586495 GTGCTCATAG
Statistics
Matches: 653, Mismatches: 39, Indels: 64
0.86 0.05 0.08
Matches are distributed among these distances:
369 11 0.02
370 1 0.00
371 8 0.01
372 16 0.02
373 37 0.06
374 219 0.34
375 49 0.08
376 4 0.01
377 1 0.00
378 61 0.09
379 6 0.01
380 18 0.03
381 120 0.18
382 86 0.13
383 16 0.02
ACGTcount: A:0.28, C:0.10, G:0.13, T:0.49
Consensus pattern (372 bp):
TAGCTGAAATCCAAGAACAAATGTATTATATCTTTCTTTCTGTTTTTGTTTATTAATTTTGATTT
GATAATTGTGGATAATTTGATCAATCTTTTTACTCTTGTTTTAAGAATTTGAAGTTGTTTTAGTT
CATATATATAAATTAGAAGTTAGCTATGCCCTATATAAAATTATTTTTTCTATTAGCTGAAATCC
AAGAACAAATGGTTTCTTTCTTTCTTTCTGTTTTTTTTTTTTATTAATTTTGATTTGATAATTGT
GGATAATTTGATCAATTTTTTTACTCTTGTTTTAAGAATTTGAAGTTGTTTTAGTTCATATATAA
AATTAGAAGTTAGCTACGCCCATATATAAAGAAATTCTTTTTTCTAT
Found at i:114586378 original size:193 final size:188
Alignment explanation
Indices: 114585389--114586503 Score: 1503
Period size: 189 Copynumber: 5.9 Consensus size: 188
114585379 ATTCGTCAAC
* * *
114585389 TAGCTGAAATTCAAGAACAAATGGTATCTTTCTTTCTTTCTTTCTGTTTTTGTTTATTAATTTTT
1 TAGCTGAAATCCAAGAACAAATGTTATCTTTCTTTCTTTCTTTCTGTTTTTGTTTATTAATTTTG
* *
114585454 ATTTGATAATTATGGATAATTTGATCAATCTTTTTACTCTTGTTTTAAGAATTTGAAGTTGTTTT
66 ATTTGATAATTGTGGATAATTTGATCAATCTTTTTACTCTTGTTTTAAGAATTTGAAATTGTTTT
** * *
114585519 AGTTCATATATATATATATATTAGAAGTTAGCTATGCCC-TATATAATA-ATTTTTTTTTCTAT
131 AGTTC--ATATATA-A-A-ATTAGAAGTTAGCTATGCCCATATATAA-AGAAATTCTTTTGTAT
* *
114585581 TAGCTGAAATCCAAGAACAAATGGTT-TCTTTCTTTCTTTCTGTT-T-TTTTTTTTTGTTAATTT
1 TAGCTGAAATCCAAGAACAAAT-GTTATCTTTCTTTCTTTCT-TTCTGTTTTTGTTTATTAATTT
* *
114585643 TGATTTGATAATTGTGGATAATTTGATCAAATTTTTTTACTCTTGTTTTAAGAATTTGAAGTTGT
64 TGATTTGATAATTGTGGATAATTTGATC-AATCTTTTTACTCTTGTTTTAAGAATTTGAAATTGT
* * * * * *
114585708 TTTAGTTCATATATAAAATTAGAAGTTAGCTACGCCCTTATGTAAAGAATTTTTTTTTCTAT
128 TTTAGTTCATATATAAAATTAGAAGTTAGCTATGCCCATATATAAAGAA-ATTCTTTTGTAT
* * * *
114585770 TAGCTGAAATTCAAGAACAAATG--A----TATAT-TTTCTTTCTGTTTTTGTTTATTAGTTTTG
1 TAGCTGAAATCCAAGAACAAATGTTATCTTTCTTTCTTTCTTTCTGTTTTTGTTTATTAATTTTG
* *
114585828 ATTTGATAATTGTGGATAATTTGATCAATCTTTTAACTCTTGTTTTAAGAATTTGAAGTTGTTTT
66 ATTTGATAATTGTGGATAATTTGATCAATCTTTTTACTCTTGTTTTAAGAATTTGAAATTGTTTT
* * *
114585893 AGTTCATATATAAAATTAGAAGTTAGCTGTGCTTCATAGGCCATATGTAAAGAAAATT-TTTTCT
131 AGTTCATATATAAAATTAGAAGTTA-----GC-T-AT-GCCCATATATAAAG-AAATTCTTTTGT
114585957 AT
187 AT
*
114585959 TAGCTGAAATCCAAGAACAAATGGTA----TCTTTCTTTCTTTCTGTTTTTGTTTATTAATTTTG
1 TAGCTGAAATCCAAGAACAAATGTTATCTTTCTTTCTTTCTTTCTGTTTTTGTTTATTAATTTTG
*
114586020 ATTTGATAATTGTGGATAATTTGATCAATTTTTTTACTCTTGTTTTAAGAATTTGAAATTGTTTT
66 ATTTGATAATTGTGGATAATTTGATCAATCTTTTTACTCTTGTTTTAAGAATTTGAAATTGTTTT
* *
114586085 CGTTCATATAT-AAATTAGAAGTTAGCTACGCCCATATATAAAGAAATTCTTTTTTGTAT
131 AGTTCATATATAAAATTAGAAGTTAGCTATGCCCATATATAAAGAAATTC--TTTTGTAT
114586144 TAGCTGAAATCCAAGAACAAATGTTATCTTTCTTTCTTTCTTTCTGTTTTTGTTTATTAATTTTG
1 TAGCTGAAATCCAAGAACAAATGTTATCTTTCTTTCTTTCTTTCTGTTTTTGTTTATTAATTTTG
*
114586209 ATTTGATAATTGTGGATAATTTGATCAATTTTTTTACTCTTGTTTTAAGAATTTGAAATTGTTTT
66 ATTTGATAATTGTGGATAATTTGATCAATCTTTTTACTCTTGTTTTAAGAATTTGAAATTGTTTT
*
114586274 CGTTCATATAT-AAATTAGAAGTTAGCTATGCCCATATATAAAGAAATTCCTTTCTGTAT
131 AGTTCATATATAAAATTAGAAGTTAGCTATGCCCATATATAAAGAAATT-CTTT-TGTAT
* *
114586333 CATCTGAAATCCAAGAACAAATGTTATCTTTCTTTCTTTCTTTCTTTCTGTTTTTGTTTATTAAT
1 TAGCTGAAATCCAAGAACAAATGTTA----TCTTTCTTTCTTTCTTTCTGTTTTTGTTTATTAAT
*
114586398 TTTGATTTGATAATTGTGGATAATTTGATCAATCTTTTTACTCTTGTTTTAAGAATTTGAAGTTG
62 TTTGATTTGATAATTGTGGATAATTTGATCAATCTTTTTACTCTTGTTTTAAGAATTTGAAATTG
* *
114586463 TTTTAGTTCATATATAAAATTAGAAGTTAGCTGTGCTCATA
127 TTTTAGTTCATATATAAAATTAGAAGTTAGCTATGCCCATA
114586504 GGCTATATTT
Statistics
Matches: 845, Mismatches: 43, Indels: 68
0.88 0.04 0.07
Matches are distributed among these distances:
181 2 0.00
182 73 0.09
183 57 0.07
184 1 0.00
185 33 0.04
186 2 0.00
187 22 0.03
188 13 0.02
189 241 0.29
190 22 0.03
191 60 0.07
192 180 0.21
193 116 0.14
194 23 0.03
ACGTcount: A:0.28, C:0.10, G:0.13, T:0.49
Consensus pattern (188 bp):
TAGCTGAAATCCAAGAACAAATGTTATCTTTCTTTCTTTCTTTCTGTTTTTGTTTATTAATTTTG
ATTTGATAATTGTGGATAATTTGATCAATCTTTTTACTCTTGTTTTAAGAATTTGAAATTGTTTT
AGTTCATATATAAAATTAGAAGTTAGCTATGCCCATATATAAAGAAATTCTTTTGTAT
Found at i:114587305 original size:85 final size:84
Alignment explanation
Indices: 114587148--114587309 Score: 218
Period size: 85 Copynumber: 1.9 Consensus size: 84
114587138 AATTTTCTGC
* * **
114587148 TTTCTTTTCATTGAAGCATGCTAAGAAACACAATAGATTTCCTTTTAATGGAATATTGAAGCCAT
1 TTTCCTTTCATTGAAGCATGCTAAGAAACACAATAGATTTCCTTTCAATGGAATATCAAAGCCAT
*
114587213 TGGAGGATTAGTCTATGCA
66 CGGAGGATTAGTCTATGCA
* * *
114587232 TTTCCTTTCGTTGAAGCATGCGTGAA-AAACATAATAGATTTCCTTTCGATGGAATATCAAAGCC
1 TTTCCTTTCATTGAAGCATGC-T-AAGAAACACAATAGATTTCCTTTCAATGGAATATCAAAGCC
*
114587296 ATCGTAGGATTAGT
64 ATCGGAGGATTAGT
114587310 TCGTAGGATG
Statistics
Matches: 67, Mismatches: 9, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
84 19 0.28
85 46 0.69
86 2 0.03
ACGTcount: A:0.31, C:0.15, G:0.19, T:0.35
Consensus pattern (84 bp):
TTTCCTTTCATTGAAGCATGCTAAGAAACACAATAGATTTCCTTTCAATGGAATATCAAAGCCAT
CGGAGGATTAGTCTATGCA
Found at i:114593162 original size:43 final size:42
Alignment explanation
Indices: 114593108--114593218 Score: 172
Period size: 41 Copynumber: 2.7 Consensus size: 42
114593098 TTAATTTCTT
*
114593108 GTTTTTTCTTAGCTTATTTTTGCATTTTTATTCAATTTCTGAA
1 GTTTGTTCTTAGCTTATTTTTGCATTTTTATTCAATTT-TGAA
*
114593151 GTTTGTTCTTAGCTTATTTTT-CATTTTTATTTAATTTTGAA
1 GTTTGTTCTTAGCTTATTTTTGCATTTTTATTCAATTTTGAA
*
114593192 GTTAGTTCTTAGCTTA-TTTTGCATTTT
1 GTTTGTTCTTAGCTTATTTTTGCATTTT
114593219 ATTACGAATT
Statistics
Matches: 64, Mismatches: 3, Indels: 4
0.90 0.04 0.06
Matches are distributed among these distances:
40 4 0.06
41 25 0.39
42 15 0.23
43 20 0.31
ACGTcount: A:0.18, C:0.10, G:0.11, T:0.61
Consensus pattern (42 bp):
GTTTGTTCTTAGCTTATTTTTGCATTTTTATTCAATTTTGAA
Found at i:114593231 original size:41 final size:41
Alignment explanation
Indices: 114593113--114593231 Score: 145
Period size: 41 Copynumber: 2.9 Consensus size: 41
114593103 TTCTTGTTTT
*
114593113 TTCTTAGCTTATTTTTGCATTTTTATT-CAATTTCTGAAGTTTG
1 TTCTTAGCTTA-TTTTGCATTTTTATTACAA-TT-TGAAGTTAG
* *
114593156 TTCTTAGCTTATTTTTCATTTTTATTTA-ATTTTGAAGTTAG
1 TTCTTAGCTTATTTTGCATTTTTA-TTACAATTTGAAGTTAG
114593197 TTCTTAGCTTATTTTGCA-TTTTATTACGAATTTGA
1 TTCTTAGCTTATTTTGCATTTTTATTAC-AATTTGA
114593232 GCTCAAATTT
Statistics
Matches: 67, Mismatches: 5, Indels: 10
0.82 0.06 0.12
Matches are distributed among these distances:
39 3 0.04
40 5 0.07
41 31 0.46
42 14 0.21
43 14 0.21
ACGTcount: A:0.21, C:0.10, G:0.11, T:0.58
Consensus pattern (41 bp):
TTCTTAGCTTATTTTGCATTTTTATTACAATTTGAAGTTAG
Found at i:114597375 original size:54 final size:55
Alignment explanation
Indices: 114597216--114597387 Score: 174
Period size: 54 Copynumber: 3.2 Consensus size: 55
114597206 ACTTCCGTTG
* * * * *
114597216 GGATCATTACTGGAGATCA-AATTTCTAGAAGGGAATCAACCTTCACTCCCGGTA
1 GGATCATTACTCGAAATCAGAATTTCTAGAAGGGAATCAACCTTCACTTCTGATA
* * * * *
114597270 GGATGATTGCTCGAAATCAGAA-TTCTAGAAAGGAATCAACCTTCGCCTCTGATA
1 GGATCATTACTCGAAATCAGAATTTCTAGAAGGGAATCAACCTTCACTTCTGATA
* *
114597324 GGATCATTAC-CATAAATC-GAATTTCTAGAAGGGAATCAACC-TCTACTTCTGATG
1 GGATCATTACTC-GAAATCAGAATTTCTAGAAGGGAATCAACCTTC-ACTTCTGATA
*
114597378 GGGTCATTAC
1 GGATCATTAC
114597388 GAAAAACCAA
Statistics
Matches: 96, Mismatches: 18, Indels: 8
0.79 0.15 0.07
Matches are distributed among these distances:
53 6 0.06
54 88 0.92
55 2 0.02
ACGTcount: A:0.32, C:0.21, G:0.20, T:0.27
Consensus pattern (55 bp):
GGATCATTACTCGAAATCAGAATTTCTAGAAGGGAATCAACCTTCACTTCTGATA
Found at i:114600240 original size:29 final size:30
Alignment explanation
Indices: 114600190--114600246 Score: 89
Period size: 29 Copynumber: 1.9 Consensus size: 30
114600180 GAATTTGATC
* *
114600190 AAATTAAAATTTCGTGTATAAAATTACATA
1 AAATTAAAAGTTCATGTATAAAATTACATA
114600220 AAATT-AAAGTTCATGTATAAAATTACA
1 AAATTAAAAGTTCATGTATAAAATTACA
114600247 CATTAAATCA
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
29 20 0.80
30 5 0.20
ACGTcount: A:0.51, C:0.07, G:0.07, T:0.35
Consensus pattern (30 bp):
AAATTAAAAGTTCATGTATAAAATTACATA
Found at i:114600546 original size:16 final size:15
Alignment explanation
Indices: 114600521--114600550 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
114600511 TTTTATGAAC
114600521 TTTTTTAATTTTTAA
1 TTTTTTAATTTTTAA
114600536 TTTTTTGAATTTTTA
1 TTTTTT-AATTTTTA
114600551 TGAATTATAC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 6 0.43
16 8 0.57
ACGTcount: A:0.23, C:0.00, G:0.03, T:0.73
Consensus pattern (15 bp):
TTTTTTAATTTTTAA
Found at i:114601815 original size:18 final size:17
Alignment explanation
Indices: 114601770--114601815 Score: 56
Period size: 18 Copynumber: 2.5 Consensus size: 17
114601760 ATTTCTTGCT
114601770 TTTTCTTTTAGGGTTAAA
1 TTTT-TTTTAGGGTTAAA
*
114601788 TTGTTATTTAGGGTCTAAA
1 TT-TTTTTTAGGGT-TAAA
114601807 TTTTTTTTA
1 TTTTTTTTA
114601816 ATCCGAGTTA
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
18 16 0.67
19 8 0.33
ACGTcount: A:0.22, C:0.04, G:0.15, T:0.59
Consensus pattern (17 bp):
TTTTTTTTAGGGTTAAA
Found at i:114602708 original size:12 final size:12
Alignment explanation
Indices: 114602691--114602715 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
114602681 TCAAATCGTA
114602691 TCCTTTTATTAT
1 TCCTTTTATTAT
114602703 TCCTTTTATTAT
1 TCCTTTTATTAT
114602715 T
1 T
114602716 TAAGTTTCTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.16, C:0.16, G:0.00, T:0.68
Consensus pattern (12 bp):
TCCTTTTATTAT
Found at i:114603913 original size:174 final size:174
Alignment explanation
Indices: 114603623--114604077 Score: 687
Period size: 174 Copynumber: 2.6 Consensus size: 174
114603613 GTTATTTTCA
* *
114603623 GATGGAAATGAAATTGTATCGATTCGAAATGGTGAAGGTAAGCTTGTTAATACTAGTATATTCCA
1 GATGGAAATGAAATTGTATCGTTTCGAAATGGTGAAGGTAAGCTTGTTAATACTAGTATACTCCA
* * * *
114603688 TGTCTAGGAGCTCATGGAACTTGAAAACTTAATGTGTGATCCTTAATTCATTAAGTGCTCGAATC
66 TGTCTATGAGCTCATAGAACTTGAAAACTTGATGTGTAATCCTTAATTCATTAAGTGCTCGAATC
* * *
114603753 AGTACTAAATTTGGTTGCAATTACCTCGTTGTCATTGTTTTCTT
131 AGTACTAAATTTGGTTGCAATAACCTCCTTGTCATTGTTTTCTC
* * * * *
114603797 GATGGAAATGAAATTGTTTTGTTTTGAAATGGTGAAGGTAAGCTTGTTGATACCAGTATACTCCA
1 GATGGAAATGAAATTGTATCGTTTCGAAATGGTGAAGGTAAGCTTGTTAATACTAGTATACTCCA
*
114603862 TGTCTATGAGCTCATAGAACATGAAAACTTGATGTGTAATCCTTAATTCATTAAGTGCTCGAATC
66 TGTCTATGAGCTCATAGAACTTGAAAACTTGATGTGTAATCCTTAATTCATTAAGTGCTCGAATC
114603927 AGTACTAAATTTGGTTGCAATAACCTCCTTGTCATTGTTTTCTC
131 AGTACTAAATTTGGTTGCAATAACCTCCTTGTCATTGTTTTCTC
* * * * **
114603971 GATGGAAACGAAATTGTATCATTTCAAAATGGTAAATATAAGCTTGTTAATACTAGTATACTCCA
1 GATGGAAATGAAATTGTATCGTTTCGAAATGGTGAAGGTAAGCTTGTTAATACTAGTATACTCCA
* *
114604036 TGTATGTGAGCTCATAGAACTTGAAAAC-TGAATGTGTAATCC
66 TGTCTATGAGCTCATAGAACTTGAAAACTTG-ATGTGTAATCC
114604078 GGTAAAAGTA
Statistics
Matches: 251, Mismatches: 29, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
173 2 0.01
174 249 0.99
ACGTcount: A:0.31, C:0.14, G:0.19, T:0.36
Consensus pattern (174 bp):
GATGGAAATGAAATTGTATCGTTTCGAAATGGTGAAGGTAAGCTTGTTAATACTAGTATACTCCA
TGTCTATGAGCTCATAGAACTTGAAAACTTGATGTGTAATCCTTAATTCATTAAGTGCTCGAATC
AGTACTAAATTTGGTTGCAATAACCTCCTTGTCATTGTTTTCTC
Found at i:114607510 original size:11 final size:11
Alignment explanation
Indices: 114607496--114607563 Score: 50
Period size: 11 Copynumber: 5.9 Consensus size: 11
114607486 TGTTTTATTA
114607496 TTAATTTAATT
1 TTAATTTAATT
114607507 TTAATTTAATAAT
1 TTAATTTAAT--T
*
114607520 ATTAGTTT--TT
1 -TTAATTTAATT
* *
114607530 TTATGTTTTATT
1 TTA-ATTTAATT
114607542 GTTAATTTAATT
1 -TTAATTTAATT
114607554 TTAATTTAAT
1 TTAATTTAAT
114607564 AATATTAGTT
Statistics
Matches: 47, Mismatches: 3, Indels: 14
0.73 0.05 0.22
Matches are distributed among these distances:
9 3 0.06
10 5 0.11
11 20 0.43
12 9 0.19
13 4 0.09
14 6 0.13
ACGTcount: A:0.32, C:0.00, G:0.04, T:0.63
Consensus pattern (11 bp):
TTAATTTAATT
Found at i:114607530 original size:22 final size:22
Alignment explanation
Indices: 114607505--114607576 Score: 56
Period size: 22 Copynumber: 3.1 Consensus size: 22
114607495 ATTAATTTAA
114607505 TTTTAATTTAATAATATTAGTT
1 TTTTAATTTAATAATATTAGTT
* * * * *
114607527 TTTTTATGTT-TTATTGTTAATTT
1 TTTTAAT-TTAATAATATT-AGTT
114607550 AATTTTAATTTAATAATATTAGTT
1 --TTTTAATTTAATAATATTAGTT
114607574 TTT
1 TTT
114607577 CTTTCATAAT
Statistics
Matches: 35, Mismatches: 10, Indels: 10
0.64 0.18 0.18
Matches are distributed among these distances:
22 14 0.40
23 5 0.14
24 5 0.14
25 11 0.31
ACGTcount: A:0.31, C:0.00, G:0.06, T:0.64
Consensus pattern (22 bp):
TTTTAATTTAATAATATTAGTT
Found at i:114607536 original size:47 final size:47
Alignment explanation
Indices: 114607482--114607576 Score: 181
Period size: 47 Copynumber: 2.0 Consensus size: 47
114607472 GTCTGAGTAA
114607482 TTTATGTTTTATTATTAATTTAATTTTAATTTAATAATATTAGTTTT
1 TTTATGTTTTATTATTAATTTAATTTTAATTTAATAATATTAGTTTT
*
114607529 TTTATGTTTTATTGTTAATTTAATTTTAATTTAATAATATTAGTTTT
1 TTTATGTTTTATTATTAATTTAATTTTAATTTAATAATATTAGTTTT
114607576 T
1 T
114607577 CTTTCATAAT
Statistics
Matches: 47, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
47 47 1.00
ACGTcount: A:0.31, C:0.00, G:0.05, T:0.64
Consensus pattern (47 bp):
TTTATGTTTTATTATTAATTTAATTTTAATTTAATAATATTAGTTTT
Found at i:114614158 original size:22 final size:22
Alignment explanation
Indices: 114614133--114614188 Score: 103
Period size: 22 Copynumber: 2.5 Consensus size: 22
114614123 GGCTATAGAT
114614133 ACCAATAGTTTCTCTACCAGTC
1 ACCAATAGTTTCTCTACCAGTC
*
114614155 ACCAATAGTTTCTCTATCAGTC
1 ACCAATAGTTTCTCTACCAGTC
114614177 ACCAATAGTTTC
1 ACCAATAGTTTC
114614189 AAATGGTGGG
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
22 33 1.00
ACGTcount: A:0.29, C:0.29, G:0.09, T:0.34
Consensus pattern (22 bp):
ACCAATAGTTTCTCTACCAGTC
Found at i:114614833 original size:23 final size:20
Alignment explanation
Indices: 114614798--114614839 Score: 57
Period size: 21 Copynumber: 1.9 Consensus size: 20
114614788 GAACATTCAT
114614798 AAAAAAATATATTTATCATAA
1 AAAAAAATATATTTA-CATAA
114614819 AAAAAAATACCTATTTACATA
1 AAAAAAATA--TATTTACATA
114614840 TATTATGGTG
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
21 9 0.47
22 4 0.21
23 6 0.32
ACGTcount: A:0.60, C:0.10, G:0.00, T:0.31
Consensus pattern (20 bp):
AAAAAAATATATTTACATAA
Found at i:114623071 original size:19 final size:20
Alignment explanation
Indices: 114623047--114623096 Score: 61
Period size: 19 Copynumber: 2.6 Consensus size: 20
114623037 TAAAAATTCC
*
114623047 AAAATTTAT-ATATTTTTAA
1 AAAATTTATAAAATTTTTAA
114623066 AAAA-TTATAAAATTTTTAA
1 AAAATTTATAAAATTTTTAA
114623085 AAAGATTT-TAAA
1 AAA-ATTTATAAA
114623097 GAATATATAA
Statistics
Matches: 27, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
18 4 0.15
19 16 0.59
20 5 0.19
21 2 0.07
ACGTcount: A:0.54, C:0.00, G:0.02, T:0.44
Consensus pattern (20 bp):
AAAATTTATAAAATTTTTAA
Found at i:114624959 original size:2 final size:2
Alignment explanation
Indices: 114624940--114624974 Score: 52
Period size: 2 Copynumber: 17.5 Consensus size: 2
114624930 TGAGCCAGAA
* *
114624940 AT AT AA AT AT AC AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
114624975 CACACACGCA
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.54, C:0.03, G:0.00, T:0.43
Consensus pattern (2 bp):
AT
Found at i:114625863 original size:40 final size:40
Alignment explanation
Indices: 114625808--114625885 Score: 129
Period size: 40 Copynumber: 1.9 Consensus size: 40
114625798 TGGCTTGCAT
114625808 TATTGCATTTATCATTATTTTAGTATGTTAATTAGGTTAA
1 TATTGCATTTATCATTATTTTAGTATGTTAATTAGGTTAA
* * *
114625848 TATTGTATTTTTCATTATTTTGGTATGTTAATTAGGTT
1 TATTGCATTTATCATTATTTTAGTATGTTAATTAGGTT
114625886 CTTCTTATAT
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
40 35 1.00
ACGTcount: A:0.26, C:0.04, G:0.14, T:0.56
Consensus pattern (40 bp):
TATTGCATTTATCATTATTTTAGTATGTTAATTAGGTTAA
Found at i:114627211 original size:17 final size:17
Alignment explanation
Indices: 114627186--114627218 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
114627176 TTTAATCCTT
114627186 CTTTATTTCCCTCAAAG
1 CTTTATTTCCCTCAAAG
*
114627203 CTTTTTTTCCCTCAAA
1 CTTTATTTCCCTCAAA
114627219 CTCCTTTTGA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.21, C:0.30, G:0.03, T:0.45
Consensus pattern (17 bp):
CTTTATTTCCCTCAAAG
Found at i:114628137 original size:77 final size:79
Alignment explanation
Indices: 114627907--114628414 Score: 551
Period size: 77 Copynumber: 6.5 Consensus size: 79
114627897 ATTAGAATTG
* * * * * * * * * **
114627907 ATAATGAGGTTGTTCGAAGAAAATATTAAATGGGTTGCTCTAGACATTGTGTTAAAAATTACAAA
1 ATAATGAGATTGTTCAAAAAAAATCTTGAATGGGTGGTTCTAGGCATTGTGTCAAAAAGAACAAA
* * *
114627972 TATGATTAGAACTT
66 TATGATCAAAACCT
* * * * * ** *
114627986 ATAAGGAGATTGTTTAAAAAAAATCTTGAATCGGTGATTCCAGGCATTGTGTCAAAAAGAGTAGA
1 ATAATGAGATTGTTCAAAAAAAATCTTGAATGGGTGGTTCTAGGCATTGTGTCAAAAAGAACAAA
*
114628051 TATGATCAAAACTT
66 TATGATCAAAACCT
* * * *
114628065 ATAATTAGATTGTT-AAAAAAAATCTTGAATGGGTGGTTCTAGGTATTGTGTC-AAAAGAGCAGA
1 ATAATGAGATTGTTCAAAAAAAATCTTGAATGGGTGGTTCTAGGCATTGTGTCAAAAAGAACAAA
114628128 TATGATCAAAACCT
66 TATGATCAAAACCT
* *
114628142 ATAATGAGATTGTTAAAAAAAAATTTCTTGAATGGGTGGTTCTAGGCATTATGTCAAAAAGAACA
1 ATAATGAGATTGTTCAAAAAAAA--TCTTGAATGGGTGGTTCTAGGCATTGTGTCAAAAAGAACA
* *
114628207 AATATGATCAGAAGCT
64 AATATGATCAAAACCT
* * *
114628223 TTAATGAAATTGTTCAAAAAAAATCTTGAATGGGTGGTTCTA-G-ATAGTGTCAAAAAGAACAAA
1 ATAATGAGATTGTTCAAAAAAAATCTTGAATGGGTGGTTCTAGGCATTGTGTCAAAAAGAACAAA
* *
114628286 TATAATCAGAACCT
66 TATGATCAAAACCT
** * * *
114628300 ATAATGAGATTGTTC-AAAAAAATCTTGAACAGATAGTTCTAGACATTGTGTCAAAAAGAACAAA
1 ATAATGAGATTGTTCAAAAAAAATCTTGAATGGGTGGTTCTAGGCATTGTGTCAAAAAGAACAAA
114628364 TATGAT-AAAACCT
66 TATGATCAAAACCT
* * * *
114628377 ATCATGAGATTATTCAAAAAAAATCTTAAATGAGTGGT
1 ATAATGAGATTGTTCAAAAAAAATCTTGAATGGGTGGT
114628415 ATGAGTCAAT
Statistics
Matches: 361, Mismatches: 61, Indels: 15
0.83 0.14 0.03
Matches are distributed among these distances:
76 22 0.06
77 98 0.27
78 83 0.23
79 89 0.25
80 28 0.08
81 41 0.11
ACGTcount: A:0.42, C:0.09, G:0.18, T:0.30
Consensus pattern (79 bp):
ATAATGAGATTGTTCAAAAAAAATCTTGAATGGGTGGTTCTAGGCATTGTGTCAAAAAGAACAAA
TATGATCAAAACCT
Found at i:114628189 original size:158 final size:155
Alignment explanation
Indices: 114627907--114628414 Score: 547
Period size: 158 Copynumber: 3.2 Consensus size: 155
114627897 ATTAGAATTG
* * * * * * * * * **
114627907 ATAATGAGGTTGTTCGAAGAAAATATTAAATGGGTTGCTCTAGACATTGTGTTAAAAATTACAAA
1 ATAATGAGATTGTTCAAAAAAAATCTTGAATGGGTGGTTCTAG--ATAGTGTCAAAAAGAACAAA
* * * * * *
114627972 TATGATTAGAACTTATAAGGAGATTGTTTAAAAAAAATCTTGAATCGGTGATTCCAGGCATTGTG
64 TATGATCAGAACCTATAATGAGATTG-TTAAAAAAAATCTTGAATAGGTGGTTCTAGGCATTGTG
** *
114628037 TCAAAAAGAGTAGATATGATCAAAACTT
128 TCAAAAAGAACAAATATGATCAAAACTT
* * * *
114628065 ATAATTAGATTGTT-AAAAAAAATCTTGAATGGGTGGTTCTAGGTATTGTGTC-AAAAGAGCAGA
1 ATAATGAGATTGTTCAAAAAAAATCTTGAATGGGTGGTTCTA-G-ATAGTGTCAAAAAGAACAAA
* * *
114628128 TATGATCAAAACCTATAATGAGATTGTTAAAAAAAAATTTCTTGAATGGGTGGTTCTAGGCATTA
64 TATGATCAGAACCTATAATGAGATTGTT-AAAAAAAA--TCTTGAATAGGTGGTTCTAGGCATTG
*
114628193 TGTCAAAAAGAACAAATATGATCAGAAGCTT
126 TGTCAAAAAGAACAAATATGATCA-AAACTT
*
114628224 -TAATGAAATTGTTCAAAAAAAATCTTGAATGGGTGGTTCTAGATAGTGTCAAAAAGAACAAATA
1 ATAATGAGATTGTTCAAAAAAAATCTTGAATGGGTGGTTCTAGATAGTGTCAAAAAGAACAAATA
* * * * * *
114628288 TAATCAGAACCTATAATGAGATTGTTCAAAAAAATCTTGAACAGATAGTTCTAGACATTGTGTCA
66 TGATCAGAACCTATAATGAGATTGTTAAAAAAAATCTTGAATAGGTGGTTCTAGGCATTGTGTCA
*
114628353 AAAAGAACAAATATGAT-AAAACCT
131 AAAAGAACAAATATGATCAAAACTT
* * * *
114628377 ATCATGAGATTATTCAAAAAAAATCTTAAATGAGTGGT
1 ATAATGAGATTGTTCAAAAAAAATCTTGAATGGGTGGT
114628415 ATGAGTCAAT
Statistics
Matches: 295, Mismatches: 47, Indels: 20
0.81 0.13 0.06
Matches are distributed among these distances:
153 4 0.01
154 33 0.11
155 44 0.15
156 37 0.13
157 42 0.14
158 103 0.35
159 32 0.11
ACGTcount: A:0.42, C:0.09, G:0.18, T:0.30
Consensus pattern (155 bp):
ATAATGAGATTGTTCAAAAAAAATCTTGAATGGGTGGTTCTAGATAGTGTCAAAAAGAACAAATA
TGATCAGAACCTATAATGAGATTGTTAAAAAAAATCTTGAATAGGTGGTTCTAGGCATTGTGTCA
AAAAGAACAAATATGATCAAAACTT
Found at i:114628312 original size:235 final size:237
Alignment explanation
Indices: 114627935--114628400 Score: 580
Period size: 235 Copynumber: 2.0 Consensus size: 237
114627925 GAAAATATTA
* * * ** * *
114627935 AATGGGTTGCTCTAGACATTGTGTTAAAAATTACAAATATGATTAGAACTTATAAGGAGATTGTT
1 AATGGGTGGCTCTAGACATTATGTCAAAAAGAACAAATATGATCAGAACTTATAAGGAAATTGTT
* * ** * * *
114628000 TAAAAAAAATCTTGAATCGGTGATTCCAGGCATTGTGTCAAAAAGAGTAGATATGATCAAAACTT
66 CAAAAAAAATCTTGAATCGGTGATTCCAGGCATAGTGTCAAAAAGAACAAATATAATCAAAACCT
* ** * * ** * *
114628065 ATAATTAGATTGTTAAAAAAAATCTTGAATGGGTGGTTCTAGGTATTGTGTC-AAAAGAGCAGAT
131 ATAATGAGATTGTTAAAAAAAATCTTGAACAGATAGTTCTAGACATTGTGTCAAAAAGAACAAAT
*
114628129 ATGATCAAAACCTATAATGAGATTGTTAAAAAAAAATTTCTTG
196 ATGAT-AAAACCTATAATGAGATTATTAAAAAAAAATTTCTTG
* * *
114628172 AATGGGTGGTTCTAGGCATTATGTCAAAAAGAACAAATATGATCAGAAGCTT-TAATGAAATTGT
1 AATGGGTGGCTCTAGACATTATGTCAAAAAGAACAAATATGATCAGAA-CTTATAAGGAAATTGT
* * * *
114628236 TCAAAAAAAATCTTGAATGGGTGGTTCTA-G-ATAGTGTCAAAAAGAACAAATATAATCAGAACC
65 TCAAAAAAAATCTTGAATCGGTGATTCCAGGCATAGTGTCAAAAAGAACAAATATAATCAAAACC
*
114628299 TATAATGAGATTGTTCAAAAAAATCTTGAACAGATAGTTCTAGACATTGTGTCAAAAAGAACAAA
130 TATAATGAGATTGTTAAAAAAAATCTTGAACAGATAGTTCTAGACATTGTGTCAAAAAGAACAAA
* *
114628364 TATGATAAAACCTATCATGAGATTATTCAAAAAAAAT
195 TATGATAAAACCTATAATGAGATTATTAAAAAAAAAT
114628401 CTTAAATGAG
Statistics
Matches: 193, Mismatches: 34, Indels: 6
0.83 0.15 0.03
Matches are distributed among these distances:
235 99 0.51
236 16 0.08
237 75 0.39
238 3 0.02
ACGTcount: A:0.42, C:0.10, G:0.18, T:0.30
Consensus pattern (237 bp):
AATGGGTGGCTCTAGACATTATGTCAAAAAGAACAAATATGATCAGAACTTATAAGGAAATTGTT
CAAAAAAAATCTTGAATCGGTGATTCCAGGCATAGTGTCAAAAAGAACAAATATAATCAAAACCT
ATAATGAGATTGTTAAAAAAAATCTTGAACAGATAGTTCTAGACATTGTGTCAAAAAGAACAAAT
ATGATAAAACCTATAATGAGATTATTAAAAAAAAATTTCTTG
Found at i:114629110 original size:18 final size:18
Alignment explanation
Indices: 114629063--114629124 Score: 56
Period size: 18 Copynumber: 3.4 Consensus size: 18
114629053 AATCAGCTAA
*
114629063 TATAATT-AATTT-CGAT
1 TATAATTGAATTTACAAT
* *
114629079 TATTATTTATATTTACAAT
1 TATAATTGA-ATTTACAAT
*
114629098 TATAATTGAATTTATAAT
1 TATAATTGAATTTACAAT
114629116 TATACATTG
1 TATA-ATTG
114629125 TAACTTAAGA
Statistics
Matches: 37, Mismatches: 5, Indels: 5
0.79 0.11 0.11
Matches are distributed among these distances:
16 6 0.16
17 1 0.03
18 16 0.43
19 14 0.38
ACGTcount: A:0.39, C:0.05, G:0.05, T:0.52
Consensus pattern (18 bp):
TATAATTGAATTTACAAT
Found at i:114631370 original size:30 final size:30
Alignment explanation
Indices: 114631336--114631398 Score: 92
Period size: 30 Copynumber: 2.1 Consensus size: 30
114631326 ACTTAACAAG
114631336 CAAATG-CTTCAAAAATAATAAAAAAATTAA
1 CAAATGCCTT-AAAAATAATAAAAAAATTAA
* *
114631366 CAAATGCCTTTAAAATAATAAGAAAATTAA
1 CAAATGCCTTAAAAATAATAAAAAAATTAA
114631396 CAA
1 CAA
114631399 TAAAATAAAT
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
30 27 0.90
31 3 0.10
ACGTcount: A:0.60, C:0.11, G:0.05, T:0.24
Consensus pattern (30 bp):
CAAATGCCTTAAAAATAATAAAAAAATTAA
Found at i:114647707 original size:16 final size:16
Alignment explanation
Indices: 114647686--114647725 Score: 71
Period size: 16 Copynumber: 2.5 Consensus size: 16
114647676 TCAACTTAAT
114647686 AGGCCCAAGCCCAACA
1 AGGCCCAAGCCCAACA
*
114647702 AGGCCCAAGCCCAATA
1 AGGCCCAAGCCCAACA
114647718 AGGCCCAA
1 AGGCCCAA
114647726 ATATATTTAC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
16 23 1.00
ACGTcount: A:0.38, C:0.40, G:0.20, T:0.03
Consensus pattern (16 bp):
AGGCCCAAGCCCAACA
Found at i:114649916 original size:37 final size:37
Alignment explanation
Indices: 114649861--114649940 Score: 142
Period size: 37 Copynumber: 2.2 Consensus size: 37
114649851 TGATCATGGG
*
114649861 CCGGGCTAAGATATAATTTTAGGCCCGTCTACTAGGC
1 CCGGGCTAAGATAAAATTTTAGGCCCGTCTACTAGGC
114649898 CCGGGCTAAGATAAAATTTTAGGCCCGTCTACTAGGC
1 CCGGGCTAAGATAAAATTTTAGGCCCGTCTACTAGGC
*
114649935 TCGGGC
1 CCGGGC
114649941 CCGGATCGGC
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 41 1.00
ACGTcount: A:0.24, C:0.25, G:0.26, T:0.25
Consensus pattern (37 bp):
CCGGGCTAAGATAAAATTTTAGGCCCGTCTACTAGGC
Found at i:114650133 original size:21 final size:22
Alignment explanation
Indices: 114650100--114650142 Score: 61
Period size: 21 Copynumber: 2.0 Consensus size: 22
114650090 ATTTGAAAAC
*
114650100 ATAAAAACAAATATTAAAACAA
1 ATAAAAACAAATACTAAAACAA
*
114650122 ATAAAAA-TAATACTAAAACAA
1 ATAAAAACAAATACTAAAACAA
114650143 TTCTTAAAAT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
21 12 0.63
22 7 0.37
ACGTcount: A:0.72, C:0.09, G:0.00, T:0.19
Consensus pattern (22 bp):
ATAAAAACAAATACTAAAACAA
Found at i:114652328 original size:31 final size:30
Alignment explanation
Indices: 114652268--114652343 Score: 84
Period size: 31 Copynumber: 2.5 Consensus size: 30
114652258 GGTGGTCTAG
* *
114652268 TTAAAA-TTTTAAAATTTTTGTGAGATTAA
1 TTAAAATTTTTAAAACTTTAGTGAGATTAA
*
114652297 -TAAGAATTTTTAAATACTTTAGTGAGTTTAA
1 TTAA-AATTTTTAAA-ACTTTAGTGAGATTAA
114652328 TTAAAATTTTCTAAAA
1 TTAAAATTTT-TAAAA
114652344 AATTCAAGAG
Statistics
Matches: 39, Mismatches: 3, Indels: 8
0.78 0.06 0.16
Matches are distributed among these distances:
28 3 0.08
29 2 0.05
30 7 0.18
31 20 0.51
32 7 0.18
ACGTcount: A:0.42, C:0.03, G:0.09, T:0.46
Consensus pattern (30 bp):
TTAAAATTTTTAAAACTTTAGTGAGATTAA
Found at i:114655786 original size:58 final size:58
Alignment explanation
Indices: 114655700--114655815 Score: 223
Period size: 58 Copynumber: 2.0 Consensus size: 58
114655690 GGCCAAATCA
114655700 CACATGCTCATTGACTCCCGTTTCCGAATTTCATCCTTACCATCCTCTTCCCTAAAAT
1 CACATGCTCATTGACTCCCGTTTCCGAATTTCATCCTTACCATCCTCTTCCCTAAAAT
*
114655758 CACATGCTCATTGACTCCTGTTTCCGAATTTCATCCTTACCATCCTCTTCCCTAAAAT
1 CACATGCTCATTGACTCCCGTTTCCGAATTTCATCCTTACCATCCTCTTCCCTAAAAT
114655816 TTTCCTTCCA
Statistics
Matches: 57, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
58 57 1.00
ACGTcount: A:0.22, C:0.35, G:0.07, T:0.35
Consensus pattern (58 bp):
CACATGCTCATTGACTCCCGTTTCCGAATTTCATCCTTACCATCCTCTTCCCTAAAAT
Found at i:114655816 original size:29 final size:29
Alignment explanation
Indices: 114655726--114655817 Score: 75
Period size: 29 Copynumber: 3.2 Consensus size: 29
114655716 CCCGTTTCCG
114655726 AATTTCATCCTTACCATCCTCTTCCCTAA
1 AATTTCATCCTTACCATCCTCTTCCCTAA
** * * *
114655755 AATCACATGCTCATTGA-C-TCCTGTTTCC--G
1 AATTTCAT-C-C-TT-ACCATCCTCTTCCCTAA
114655784 AATTTCATCCTTACCATCCTCTTCCCTAA
1 AATTTCATCCTTACCATCCTCTTCCCTAA
114655813 AATTT
1 AATTT
114655818 TCCTTCCACT
Statistics
Matches: 45, Mismatches: 10, Indels: 16
0.63 0.14 0.23
Matches are distributed among these distances:
25 1 0.02
26 3 0.07
27 9 0.20
28 1 0.02
29 17 0.38
30 1 0.02
31 9 0.20
32 3 0.07
33 1 0.02
ACGTcount: A:0.24, C:0.34, G:0.04, T:0.38
Consensus pattern (29 bp):
AATTTCATCCTTACCATCCTCTTCCCTAA
Found at i:114668426 original size:510 final size:510
Alignment explanation
Indices: 114667467--114668491 Score: 1996
Period size: 510 Copynumber: 2.0 Consensus size: 510
114667457 ATACTAAAAT
114667467 TTTATTGACGGGATTTTGACCTCTCAGGGAGAAGTCTGCAAAGTGTCTGACTCCTCAACAGGTTC
1 TTTATTGACGGGATTTTGACCTCTCAGGGAGAAGTCTGCAAAGTGTCTGACTCCTCAACAGGTTC
*
114667532 GATATTGGGCCCGAGGTGCCTATGTTCAGTTTTATTTCTAGCTTTCATCTCCCAACTCTGCTGAG
66 GATATTGGGCCCGAGGTGCCTATGTTCAGTTTTATTTCTAGCTTTCATCTCCCAACTCTGCTCAG
*
114667597 AGCCCGTGCTAGTTCACAAAATAACTCTACCAAGAGCCTGATATGGTGACGGGTTTATAGAGCCA
131 AGCCCGAGCTAGTTCACAAAATAACTCTACCAAGAGCCTGATATGGTGACGGGTTTATAGAGCCA
114667662 GAGTGCCTTAGGCTCTCTGTAAAGTCACTCTGTAAACCAGCTTGGGCTCTCAACAAATTCAGGAG
196 GAGTGCCTTAGGCTCTCTGTAAAGTCACTCTGTAAACCAGCTTGGGCTCTCAACAAATTCAGGAG
* *
114667727 ACAAGACCCGAGATAAAACCAAACATAGACACTCCGAGCCCAGTATCCAATCGCCTGAGGAGTTC
261 ACAAGACCCGAGATAAAACCAAACATAGACACTCCGAGCCCACTATCCAACCGCCTGAGGAGTTC
114667792 GTCAACCCTCAATGGACGACAGTACACCAACTTCTACCCGAGAGGTCAAAATCCCCTCAACAAAT
326 GTCAACCCTCAATGGACGACAGTACACCAACTTCTACCCGAGAGGTCAAAATCCCCTCAACAAAT
*
114667857 TTCAAGTAGAACAATTATCACCAAAAAGAAAAAAGGATTTGACTATGAATTTTATCTACCAAGGA
391 TTCAAGTAGAACAATTATCACCAAAAAGAAAAAAGGATTCGACTATGAATTTTATCTACCAAGGA
114667922 GCATCAATAAGTTAAACCAACAAAGAATCTCGAATTCCAATACAATCATTCCATA
456 GCATCAATAAGTTAAACCAACAAAGAATCTCGAATTCCAATACAATCATTCCATA
114667977 TTTATTGACGGGATTTTGACCTCTCAGGGAGAAGTCTGCAAAGTGTCTGACTCCTCAACAGGTTC
1 TTTATTGACGGGATTTTGACCTCTCAGGGAGAAGTCTGCAAAGTGTCTGACTCCTCAACAGGTTC
114668042 GATATTGGGCCCGAGGTGCCTATGTTCAGTTTTATTTCTAGCTTTCATCTCCCAACTCTGCTCAG
66 GATATTGGGCCCGAGGTGCCTATGTTCAGTTTTATTTCTAGCTTTCATCTCCCAACTCTGCTCAG
114668107 AGCCCGAGCTAGTTCACAAAATAACTCTACCAAGAGCCTGATATGGTGACGGGTTTATAGAGCCA
131 AGCCCGAGCTAGTTCACAAAATAACTCTACCAAGAGCCTGATATGGTGACGGGTTTATAGAGCCA
*
114668172 GAGTGCCTTAGGCTCTCTGTAAAGTCACTCTGTAAACCAGCTTGGGCTCTCGACAAATTCAGGAG
196 GAGTGCCTTAGGCTCTCTGTAAAGTCACTCTGTAAACCAGCTTGGGCTCTCAACAAATTCAGGAG
114668237 ACAAGACCCGAGATAAAACCAAACATAGACACTCCGAGCCCACTATCCAACCGCCTGAGGAGTTC
261 ACAAGACCCGAGATAAAACCAAACATAGACACTCCGAGCCCACTATCCAACCGCCTGAGGAGTTC
114668302 GTCAACCCTCAATGGACGACAGTACACCAACTTCTACCCGAGAGGTCAAAATCCCCTCAACAAAT
326 GTCAACCCTCAATGGACGACAGTACACCAACTTCTACCCGAGAGGTCAAAATCCCCTCAACAAAT
114668367 TTCAAGTAGAACAATTATCACCAAAAAGAAAAAAGGATTCGACTATGAATTTTATCTACCAAGGA
391 TTCAAGTAGAACAATTATCACCAAAAAGAAAAAAGGATTCGACTATGAATTTTATCTACCAAGGA
114668432 GCATCAATAAGTTAAACCAACAAAGAATCTCGAATTCCAATACAATCATTCCATA
456 GCATCAATAAGTTAAACCAACAAAGAATCTCGAATTCCAATACAATCATTCCATA
114668487 TTTAT
1 TTTAT
114668492 ATCAAAAAAT
Statistics
Matches: 509, Mismatches: 6, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
510 509 1.00
ACGTcount: A:0.32, C:0.25, G:0.18, T:0.25
Consensus pattern (510 bp):
TTTATTGACGGGATTTTGACCTCTCAGGGAGAAGTCTGCAAAGTGTCTGACTCCTCAACAGGTTC
GATATTGGGCCCGAGGTGCCTATGTTCAGTTTTATTTCTAGCTTTCATCTCCCAACTCTGCTCAG
AGCCCGAGCTAGTTCACAAAATAACTCTACCAAGAGCCTGATATGGTGACGGGTTTATAGAGCCA
GAGTGCCTTAGGCTCTCTGTAAAGTCACTCTGTAAACCAGCTTGGGCTCTCAACAAATTCAGGAG
ACAAGACCCGAGATAAAACCAAACATAGACACTCCGAGCCCACTATCCAACCGCCTGAGGAGTTC
GTCAACCCTCAATGGACGACAGTACACCAACTTCTACCCGAGAGGTCAAAATCCCCTCAACAAAT
TTCAAGTAGAACAATTATCACCAAAAAGAAAAAAGGATTCGACTATGAATTTTATCTACCAAGGA
GCATCAATAAGTTAAACCAACAAAGAATCTCGAATTCCAATACAATCATTCCATA
Found at i:114668813 original size:7 final size:7
Alignment explanation
Indices: 114668801--114668826 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
114668791 AAATCAAAGG
114668801 TCTTTGA
1 TCTTTGA
114668808 TCTTTGA
1 TCTTTGA
114668815 TCTTTGA
1 TCTTTGA
114668822 TCTTT
1 TCTTT
114668827 CTTTTTCTTG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.12, C:0.15, G:0.12, T:0.62
Consensus pattern (7 bp):
TCTTTGA
Found at i:114673481 original size:21 final size:18
Alignment explanation
Indices: 114673457--114673500 Score: 52
Period size: 22 Copynumber: 2.2 Consensus size: 18
114673447 AAATTCATGC
114673457 TTAAGACATTTACTTTTCTTT
1 TTAAGACA-TTA-TTTT-TTT
114673478 TTAAAGACATTATTTTTTT
1 TT-AAGACATTATTTTTTT
114673497 TTAA
1 TTAA
114673501 AGAAGTATCA
Statistics
Matches: 22, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
18 2 0.09
19 5 0.23
20 4 0.18
21 5 0.23
22 6 0.27
ACGTcount: A:0.30, C:0.09, G:0.05, T:0.57
Consensus pattern (18 bp):
TTAAGACATTATTTTTTT
Found at i:114673499 original size:19 final size:22
Alignment explanation
Indices: 114673459--114673503 Score: 69
Period size: 19 Copynumber: 2.2 Consensus size: 22
114673449 ATTCATGCTT
114673459 AAGACATTTACTTTTCTTTTTA
1 AAGACATTTACTTTTCTTTTTA
114673481 AAGACA-TTA-TTTT-TTTTTA
1 AAGACATTTACTTTTCTTTTTA
114673500 AAGA
1 AAGA
114673504 AGTATCATAT
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
19 10 0.43
20 4 0.17
21 3 0.13
22 6 0.26
ACGTcount: A:0.33, C:0.09, G:0.07, T:0.51
Consensus pattern (22 bp):
AAGACATTTACTTTTCTTTTTA
Found at i:114675050 original size:16 final size:17
Alignment explanation
Indices: 114675014--114675053 Score: 50
Period size: 16 Copynumber: 2.5 Consensus size: 17
114675004 TCGATACTTC
114675014 ATTGATCGACCATGGCG
1 ATTGATCGACCATGGCG
114675031 -TTGATCGA-C-TGGTCG
1 ATTGATCGACCATGG-CG
114675046 ATTGATCG
1 ATTGATCG
114675054 GATTCGAGCT
Statistics
Matches: 21, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
14 3 0.14
15 3 0.14
16 15 0.71
ACGTcount: A:0.20, C:0.20, G:0.30, T:0.30
Consensus pattern (17 bp):
ATTGATCGACCATGGCG
Found at i:114681079 original size:20 final size:20
Alignment explanation
Indices: 114681033--114681080 Score: 53
Period size: 20 Copynumber: 2.4 Consensus size: 20
114681023 ACAACGAATA
* *
114681033 AATATATTTTTAAATTATTT
1 AATATATATTTAAATTATAT
*
114681053 AAAATATATTTATAATT-TAT
1 AATATATATTTA-AATTATAT
114681073 AATATATA
1 AATATATA
114681081 AAATAAATAT
Statistics
Matches: 23, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
20 19 0.83
21 4 0.17
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (20 bp):
AATATATATTTAAATTATAT
Found at i:114682913 original size:28 final size:28
Alignment explanation
Indices: 114682881--114682966 Score: 67
Period size: 28 Copynumber: 3.2 Consensus size: 28
114682871 ATGTTCATAA
114682881 ATGATCTGTGTTTTGGATATGTAATGCT
1 ATGATCTGTGTTTTGGATATGTAATGCT
* ***
114682909 ATGAT-TATG-TTT--A-AT-TACCACAT
1 ATGATCTGTGTTTTGGATATGTAATGC-T
114682932 AAATGATCTGTGTTTTGGATATGTAATGCT
1 --ATGATCTGTGTTTTGGATATGTAATGCT
114682962 ATGAT
1 ATGAT
114682967 TATGTTTAAT
Statistics
Matches: 41, Mismatches: 8, Indels: 18
0.61 0.12 0.27
Matches are distributed among these distances:
22 3 0.07
23 3 0.07
24 1 0.02
25 5 0.12
26 6 0.15
27 6 0.15
28 10 0.24
29 1 0.02
30 3 0.07
31 3 0.07
ACGTcount: A:0.28, C:0.08, G:0.20, T:0.44
Consensus pattern (28 bp):
ATGATCTGTGTTTTGGATATGTAATGCT
Found at i:114682939 original size:53 final size:53
Alignment explanation
Indices: 114682876--114682982 Score: 214
Period size: 53 Copynumber: 2.0 Consensus size: 53
114682866 TATCCATGTT
114682876 CATAAATGATCTGTGTTTTGGATATGTAATGCTATGATTATGTTTAATTACCA
1 CATAAATGATCTGTGTTTTGGATATGTAATGCTATGATTATGTTTAATTACCA
114682929 CATAAATGATCTGTGTTTTGGATATGTAATGCTATGATTATGTTTAATTACCA
1 CATAAATGATCTGTGTTTTGGATATGTAATGCTATGATTATGTTTAATTACCA
114682982 C
1 C
114682983 CCCAAGGACA
Statistics
Matches: 54, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
53 54 1.00
ACGTcount: A:0.30, C:0.10, G:0.17, T:0.43
Consensus pattern (53 bp):
CATAAATGATCTGTGTTTTGGATATGTAATGCTATGATTATGTTTAATTACCA
Found at i:114688146 original size:2 final size:2
Alignment explanation
Indices: 114688089--114688132 Score: 79
Period size: 2 Copynumber: 22.0 Consensus size: 2
114688079 AAGCTAGATC
*
114688089 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT GT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
114688131 AT
1 AT
114688133 TTTAAAATAT
Statistics
Matches: 40, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
2 40 1.00
ACGTcount: A:0.48, C:0.00, G:0.02, T:0.50
Consensus pattern (2 bp):
AT
Found at i:114694865 original size:31 final size:31
Alignment explanation
Indices: 114694825--114694887 Score: 90
Period size: 31 Copynumber: 2.0 Consensus size: 31
114694815 TTACAAATTG
* ** *
114694825 GTCATTGAACTATTCGGATGTTTTTATTTAA
1 GTCAGTGAACTATTCAAAAGTTTTTATTTAA
114694856 GTCAGTGAACTATTCAAAAGTTTTTATTTAA
1 GTCAGTGAACTATTCAAAAGTTTTTATTTAA
114694887 G
1 G
114694888 CCACTATGAT
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
31 28 1.00
ACGTcount: A:0.30, C:0.10, G:0.16, T:0.44
Consensus pattern (31 bp):
GTCAGTGAACTATTCAAAAGTTTTTATTTAA
Found at i:114696626 original size:13 final size:14
Alignment explanation
Indices: 114696598--114696626 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
114696588 TTTTTTTAAC
114696598 TTTTCCCAGTAAAA
1 TTTTCCCAGTAAAA
114696612 TTTTCCCAG-AAAA
1 TTTTCCCAGTAAAA
114696625 TT
1 TT
114696627 AAAAAAAAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 6 0.40
14 9 0.60
ACGTcount: A:0.34, C:0.21, G:0.07, T:0.38
Consensus pattern (14 bp):
TTTTCCCAGTAAAA
Found at i:114697964 original size:4 final size:4
Alignment explanation
Indices: 114697955--114698007 Score: 97
Period size: 4 Copynumber: 13.2 Consensus size: 4
114697945 TCCCTTTTTA
*
114697955 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGC ATGT ATGT ATGT ATGT
1 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
114698003 ATGT A
1 ATGT A
114698008 AGAGATGAAA
Statistics
Matches: 47, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
4 47 1.00
ACGTcount: A:0.26, C:0.02, G:0.25, T:0.47
Consensus pattern (4 bp):
ATGT
Found at i:114705063 original size:4 final size:4
Alignment explanation
Indices: 114705047--114705093 Score: 85
Period size: 4 Copynumber: 11.8 Consensus size: 4
114705037 GGGTTTTGAT
*
114705047 TGTA TGCA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGT
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGT
114705094 TATGGGTTAT
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
4 41 1.00
ACGTcount: A:0.23, C:0.02, G:0.26, T:0.49
Consensus pattern (4 bp):
TGTA
Found at i:114714720 original size:32 final size:32
Alignment explanation
Indices: 114714677--114714753 Score: 91
Period size: 32 Copynumber: 2.4 Consensus size: 32
114714667 CAAAATAAAT
** *
114714677 TATGAAAAGTTACGAATGTGAAGAGGCTTGAA
1 TATGAAAAGTTACGAATGCAAAGAGACTTGAA
* **
114714709 TATGAAGAGTTAATAATGCAAAGAGACTTGAA
1 TATGAAAAGTTACGAATGCAAAGAGACTTGAA
*
114714741 GATGAAAAGTTAC
1 TATGAAAAGTTAC
114714754 ACACATGCAT
Statistics
Matches: 36, Mismatches: 9, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
32 36 1.00
ACGTcount: A:0.44, C:0.06, G:0.25, T:0.25
Consensus pattern (32 bp):
TATGAAAAGTTACGAATGCAAAGAGACTTGAA
Found at i:114719222 original size:32 final size:32
Alignment explanation
Indices: 114719179--114719255 Score: 91
Period size: 32 Copynumber: 2.4 Consensus size: 32
114719169 CAAAATAAAT
** *
114719179 TATGAAAAGTTACGAATGTGAAGAGGCTTGAA
1 TATGAAAAGTTACGAATGCAAAGAGACTTGAA
* **
114719211 TATGAAGAGTTAATAATGCAAAGAGACTTGAA
1 TATGAAAAGTTACGAATGCAAAGAGACTTGAA
*
114719243 GATGAAAAGTTAC
1 TATGAAAAGTTAC
114719256 ACACATGCAT
Statistics
Matches: 36, Mismatches: 9, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
32 36 1.00
ACGTcount: A:0.44, C:0.06, G:0.25, T:0.25
Consensus pattern (32 bp):
TATGAAAAGTTACGAATGCAAAGAGACTTGAA
Found at i:114723512 original size:16 final size:16
Alignment explanation
Indices: 114723488--114723518 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
114723478 TGAAATAAGT
114723488 TATGGATATATATATG
1 TATGGATATATATATG
*
114723504 TATGTATATATATAT
1 TATGGATATATATAT
114723519 CTTAAACGTC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.39, C:0.00, G:0.13, T:0.48
Consensus pattern (16 bp):
TATGGATATATATATG
Found at i:114725119 original size:327 final size:326
Alignment explanation
Indices: 114724581--114725174 Score: 707
Period size: 327 Copynumber: 1.8 Consensus size: 326
114724571 TTGTATACTG
* * *
114724581 GGGCCTAAACTTTGGCTTGATACAAATTAGTCATTGATATCTACTTGAAAACCCAAAGTTCAAAC
1 GGGCCTAAACTTTCGCTTGATACAAATTAGTCATTGATATCTACTTAAAAACCCAAAATTCAAAC
* *** * * * *
114724646 CCCAGTGTGGGAATAATTGTCAAGTTCAGGCCTTAAAGTGAAAATAATTGTCAAGTTCAGGGACT
66 CCCAATGTAAAAATAATTGTCAAGCTCAGGCCTCAAAGTGAAAACAATTGTCAAGTTCACGGACT
* * * * * *
114724711 AACTTGAACCAAAAAAACTTCAAGCCCTATTGTAAGAATAATTGTCTAGTTTAGACTTCAATGTG
131 AACTTGAACCAAAAAAACTTCAAGCCCCAATATAAGAATAATTGTCTAGTTCAGACCTCAATATG
** ** *
114724776 GGAACAATTACCAAGTTCAAAAATTAACTTTGACAAAAAAAAAAGTTCAAGTCTCAAT-TTGGGT
196 AAAACAATTACCAAGTTCAAAAATTAACTACGACAAAAAAAAAA-TTCAAATCTCAATATT-GGT
114724840 GTTGTTGATGGGGCTTGAACTTTTTTTGTTCAAGTTAGCCCTTAAACTTGTTAATTATTTACACA
259 GTTGTTGATGGGGCTTGAACTTTTTTTGTTCAAGTTAGCCCTTAAACTTGTTAATTATTTACACA
114724905 TTA
324 TTA
* * *
114724908 GGGCCTAAACTTTCGCTTGGTACAAGTTAGTCTTTGATAAT-TACTTAAAAACCTCAAAATTCAA
1 GGGCCTAAACTTTCGCTTGATACAAATTAGTCATTGAT-ATCTACTTAAAAACC-CAAAATTCAA
* * * *
114724972 ACCTCAATGTAAAAAT-ATT-TACTAAGCTGAGGCCTCAAAGTGAGAACGATTGTCAAGTTCAAC
64 ACCCCAATGTAAAAATAATTGT-C-AAGCTCAGGCCTCAAAGTGAAAACAATTGTCAAGTTC-AC
* * * *
114725035 GG-CTAACTTGGA-TAAAAAAA-TTCATGCCCCAATATAGGAATAAATTGTCTAGTTCAGACCTC
126 GGACTAACTTGAACCAAAAAAACTTCAAGCCCCAATATAAGAAT-AATTGTCTAGTTCAGACCTC
* * * ** * *
114725097 AGTATGAAAACAATTACCAAGTTTAGAAATTAACTACGACAGGAAAAAAATTTAAATTTCAATAT
190 AATATGAAAACAATTACCAAGTTCAAAAATTAACTACGACAAAAAAAAAATTCAAATCTCAATAT
114725162 TGGTGTTGTTGAT
255 TGGTGTTGTTGAT
114725175 CGTTCGGGCG
Statistics
Matches: 220, Mismatches: 40, Indels: 15
0.80 0.15 0.05
Matches are distributed among these distances:
326 39 0.18
327 116 0.53
328 62 0.28
329 3 0.01
ACGTcount: A:0.37, C:0.16, G:0.16, T:0.31
Consensus pattern (326 bp):
GGGCCTAAACTTTCGCTTGATACAAATTAGTCATTGATATCTACTTAAAAACCCAAAATTCAAAC
CCCAATGTAAAAATAATTGTCAAGCTCAGGCCTCAAAGTGAAAACAATTGTCAAGTTCACGGACT
AACTTGAACCAAAAAAACTTCAAGCCCCAATATAAGAATAATTGTCTAGTTCAGACCTCAATATG
AAAACAATTACCAAGTTCAAAAATTAACTACGACAAAAAAAAAATTCAAATCTCAATATTGGTGT
TGTTGATGGGGCTTGAACTTTTTTTGTTCAAGTTAGCCCTTAAACTTGTTAATTATTTACACATT
A
Found at i:114725445 original size:18 final size:17
Alignment explanation
Indices: 114725412--114725445 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
114725402 AAAAATCTAA
*
114725412 ATCGACTCTTATTTTAG
1 ATCGACTCTAATTTTAG
114725429 ATCGACTCCTAATTTTA
1 ATCGACT-CTAATTTTA
114725446 AAAGGTTCTA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 7 0.47
18 8 0.53
ACGTcount: A:0.26, C:0.21, G:0.09, T:0.44
Consensus pattern (17 bp):
ATCGACTCTAATTTTAG
Found at i:114737541 original size:29 final size:30
Alignment explanation
Indices: 114737498--114737555 Score: 73
Period size: 29 Copynumber: 2.0 Consensus size: 30
114737488 AAAACTTTTG
*
114737498 ATTATTTACACAAATAACCTA-TTTTGAAA
1 ATTATTTACACAAATAACCCACTTTTGAAA
** *
114737527 ATTATTTACGTAAATGACCCACTTTTGAA
1 ATTATTTACACAAATAACCCACTTTTGAA
114737556 TAGTAAACAT
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
29 17 0.71
30 7 0.29
ACGTcount: A:0.40, C:0.16, G:0.07, T:0.38
Consensus pattern (30 bp):
ATTATTTACACAAATAACCCACTTTTGAAA
Found at i:114743977 original size:6 final size:6
Alignment explanation
Indices: 114743966--114744009 Score: 52
Period size: 6 Copynumber: 7.3 Consensus size: 6
114743956 TTTCTTTGGT
* * * *
114743966 GGTGGA GGTGGA GGAGGA GGAGGT GGTGGG GGTGGA GGTGGA GG
1 GGTGGA GGTGGA GGTGGA GGTGGA GGTGGA GGTGGA GGTGGA GG
114744010 AGGTGATGCT
Statistics
Matches: 33, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
6 33 1.00
ACGTcount: A:0.16, C:0.00, G:0.70, T:0.14
Consensus pattern (6 bp):
GGTGGA
Found at i:114743990 original size:24 final size:24
Alignment explanation
Indices: 114743963--114744014 Score: 86
Period size: 24 Copynumber: 2.2 Consensus size: 24
114743953 TAGTTTCTTT
114743963 GGTGGTGGAGGTGGAGGAGGAGGA
1 GGTGGTGGAGGTGGAGGAGGAGGA
* *
114743987 GGTGGTGGGGGTGGAGGTGGAGGA
1 GGTGGTGGAGGTGGAGGAGGAGGA
114744011 GGTG
1 GGTG
114744015 ATGCTTCAAG
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.15, C:0.00, G:0.69, T:0.15
Consensus pattern (24 bp):
GGTGGTGGAGGTGGAGGAGGAGGA
Found at i:114744215 original size:21 final size:21
Alignment explanation
Indices: 114744191--114744234 Score: 61
Period size: 21 Copynumber: 2.1 Consensus size: 21
114744181 AGCAAGCATA
114744191 GGAGGAGAAGGAGGTGGCGGT
1 GGAGGAGAAGGAGGTGGCGGT
* * *
114744212 GGAGGCGGAGGAGGTGGTGGT
1 GGAGGAGAAGGAGGTGGCGGT
114744233 GG
1 GG
114744235 TGTTAGTAAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.18, C:0.05, G:0.66, T:0.11
Consensus pattern (21 bp):
GGAGGAGAAGGAGGTGGCGGT
Found at i:114744604 original size:6 final size:6
Alignment explanation
Indices: 114744593--114744621 Score: 58
Period size: 6 Copynumber: 4.8 Consensus size: 6
114744583 GGGATTTGGT
114744593 ATGGGA ATGGGA ATGGGA ATGGGA ATGGG
1 ATGGGA ATGGGA ATGGGA ATGGGA ATGGG
114744622 CATTGGGGTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.31, C:0.00, G:0.52, T:0.17
Consensus pattern (6 bp):
ATGGGA
Found at i:114761119 original size:24 final size:23
Alignment explanation
Indices: 114761092--114761137 Score: 65
Period size: 24 Copynumber: 2.0 Consensus size: 23
114761082 TTTTTTTGTA
*
114761092 TTTTATATGTTTAATTACTTTTAG
1 TTTTATATATTTAATTA-TTTTAG
*
114761116 TTTTATTTATTTAATTATTTTA
1 TTTTATATATTTAATTATTTTA
114761138 TTAATTAAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
23 5 0.25
24 15 0.75
ACGTcount: A:0.26, C:0.02, G:0.04, T:0.67
Consensus pattern (23 bp):
TTTTATATATTTAATTATTTTAG
Found at i:114762237 original size:63 final size:63
Alignment explanation
Indices: 114762169--114762292 Score: 239
Period size: 63 Copynumber: 2.0 Consensus size: 63
114762159 TTACTAATTC
*
114762169 AATAAATTAATTTGTCTACAAAAGAAATTCATATATTCAGACATATTTTGCTTGATTTGGTGT
1 AATAAATTAATTTGTCTACAAAAGAAATTCATATATTCAAACATATTTTGCTTGATTTGGTGT
114762232 AATAAATTAATTTGTCTACAAAAGAAATTCATATATTCAAACATATTTTGCTTGATTTGGT
1 AATAAATTAATTTGTCTACAAAAGAAATTCATATATTCAAACATATTTTGCTTGATTTGGT
114762293 ATTTAAACTT
Statistics
Matches: 60, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
63 60 1.00
ACGTcount: A:0.38, C:0.10, G:0.11, T:0.41
Consensus pattern (63 bp):
AATAAATTAATTTGTCTACAAAAGAAATTCATATATTCAAACATATTTTGCTTGATTTGGTGT
Found at i:114762440 original size:24 final size:23
Alignment explanation
Indices: 114762408--114762453 Score: 65
Period size: 24 Copynumber: 2.0 Consensus size: 23
114762398 CATGATATTT
*
114762408 TTTTATTTTATATGTTTAATTAC
1 TTTTATTTTATATATTTAATTAC
*
114762431 TTTTAGTTTTATTTATTTAATTA
1 TTTTA-TTTTATATATTTAATTA
114762454 TTGTACTAAT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
23 5 0.25
24 15 0.75
ACGTcount: A:0.26, C:0.02, G:0.04, T:0.67
Consensus pattern (23 bp):
TTTTATTTTATATATTTAATTAC
Found at i:114766337 original size:6 final size:6
Alignment explanation
Indices: 114766326--114766369 Score: 52
Period size: 6 Copynumber: 7.3 Consensus size: 6
114766316 AGCACCACCT
* * * *
114766326 CCTCCA CCTCCA CCCCCA CCACCT CCTCCT CCTCCA CCTCCA CC
1 CCTCCA CCTCCA CCTCCA CCTCCA CCTCCA CCTCCA CCTCCA CC
114766370 ACCAAAGAAA
Statistics
Matches: 33, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
6 33 1.00
ACGTcount: A:0.14, C:0.70, G:0.00, T:0.16
Consensus pattern (6 bp):
CCTCCA
Found at i:114766349 original size:24 final size:24
Alignment explanation
Indices: 114766318--114766372 Score: 92
Period size: 24 Copynumber: 2.3 Consensus size: 24
114766308 TTACTTGAAG
114766318 CACCACCTCCTCCACCTCCACCCC
1 CACCACCTCCTCCACCTCCACCCC
* *
114766342 CACCACCTCCTCCTCCTCCACCTC
1 CACCACCTCCTCCACCTCCACCCC
114766366 CACCACC
1 CACCACC
114766373 AAAGAAACTA
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
24 29 1.00
ACGTcount: A:0.16, C:0.69, G:0.00, T:0.15
Consensus pattern (24 bp):
CACCACCTCCTCCACCTCCACCCC
Found at i:114776705 original size:38 final size:38
Alignment explanation
Indices: 114776662--114776739 Score: 156
Period size: 38 Copynumber: 2.1 Consensus size: 38
114776652 ATTATTTAAG
114776662 TTAAACGTTTTTCTCAAATTAACTCAAATAAATAAATT
1 TTAAACGTTTTTCTCAAATTAACTCAAATAAATAAATT
114776700 TTAAACGTTTTTCTCAAATTAACTCAAATAAATAAATT
1 TTAAACGTTTTTCTCAAATTAACTCAAATAAATAAATT
114776738 TT
1 TT
114776740 TACTCGATTC
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 40 1.00
ACGTcount: A:0.44, C:0.13, G:0.03, T:0.41
Consensus pattern (38 bp):
TTAAACGTTTTTCTCAAATTAACTCAAATAAATAAATT
Found at i:114777840 original size:30 final size:32
Alignment explanation
Indices: 114777784--114777850 Score: 77
Period size: 31 Copynumber: 2.2 Consensus size: 32
114777774 TATACTCTAT
*
114777784 ATTTTTATAAATTTTTAAAAGATTAAATTG-A
1 ATTTTTATAAATTTTTAAAAGATTAAAGTGTA
* *
114777815 ATTTTTAT-AA-TTTTAAGAGGGTTAAAGTGTA
1 ATTTTTATAAATTTTTAA-AAGATTAAAGTGTA
114777846 ATTTT
1 ATTTT
114777851 ACTTTTATTA
Statistics
Matches: 31, Mismatches: 3, Indels: 4
0.82 0.08 0.11
Matches are distributed among these distances:
29 6 0.19
30 11 0.35
31 14 0.45
ACGTcount: A:0.39, C:0.00, G:0.12, T:0.49
Consensus pattern (32 bp):
ATTTTTATAAATTTTTAAAAGATTAAAGTGTA
Found at i:114778048 original size:11 final size:11
Alignment explanation
Indices: 114778034--114778063 Score: 60
Period size: 11 Copynumber: 2.7 Consensus size: 11
114778024 ATTAAAATTA
114778034 TTTTAAATAAT
1 TTTTAAATAAT
114778045 TTTTAAATAAT
1 TTTTAAATAAT
114778056 TTTTAAAT
1 TTTTAAAT
114778064 TTCAAAATAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 19 1.00
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (11 bp):
TTTTAAATAAT
Found at i:114781749 original size:21 final size:21
Alignment explanation
Indices: 114781723--114781763 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
114781713 ATCTGCTCAA
* *
114781723 ACTCCACCTGTTTTGGAGTAC
1 ACTCCACCTGCTGTGGAGTAC
114781744 ACTCCACCTGCTGTGGAGTA
1 ACTCCACCTGCTGTGGAGTA
114781764 TTGCTCGTCT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.20, C:0.29, G:0.22, T:0.29
Consensus pattern (21 bp):
ACTCCACCTGCTGTGGAGTAC
Found at i:114786625 original size:46 final size:46
Alignment explanation
Indices: 114786513--114786630 Score: 130
Period size: 46 Copynumber: 2.6 Consensus size: 46
114786503 GACAGGACAG
* * * *
114786513 GACAGAAATAAGCCATGTAAGTCCATATCAGTTATATGGCTTTGGA
1 GACAGGAATAAGGCATGTAAGTCCATATCAGTTATATGCCATTGGA
* * * *
114786559 GACAGGAATGAGGCACGTAAGCCCATATTA-TATATATGCCATTGGA
1 GACAGGAATAAGGCATGTAAGTCCATATCAGT-TATATGCCATTGGA
**
114786605 GACAGGAATAATTCATGTAAGTCCAT
1 GACAGGAATAAGGCATGTAAGTCCAT
114786631 GTCGAAGACA
Statistics
Matches: 58, Mismatches: 13, Indels: 2
0.79 0.18 0.03
Matches are distributed among these distances:
45 1 0.02
46 57 0.98
ACGTcount: A:0.36, C:0.16, G:0.22, T:0.26
Consensus pattern (46 bp):
GACAGGAATAAGGCATGTAAGTCCATATCAGTTATATGCCATTGGA
Found at i:114794958 original size:31 final size:31
Alignment explanation
Indices: 114794901--114794964 Score: 94
Period size: 31 Copynumber: 2.1 Consensus size: 31
114794891 CAAATTTTAA
* *
114794901 AATTTAAAAAGTACAATAACTGAAATTGATC
1 AATTTAAAAAGTAAAATAACTAAAATTGATC
114794932 AATTTAAAAAGTATAAAT-ACTAAAATTGATC
1 AATTTAAAAAGTA-AAATAACTAAAATTGATC
114794963 AA
1 AA
114794965 ATTAGAATAC
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
31 27 0.90
32 3 0.10
ACGTcount: A:0.55, C:0.08, G:0.08, T:0.30
Consensus pattern (31 bp):
AATTTAAAAAGTAAAATAACTAAAATTGATC
Found at i:114803143 original size:28 final size:28
Alignment explanation
Indices: 114803087--114803143 Score: 71
Period size: 28 Copynumber: 2.0 Consensus size: 28
114803077 ACGTGGACCG
* *
114803087 ATTATTTAACTAGTAAACGAAGTACAAT
1 ATTATTTAACTAATAAACGAAATACAAT
*
114803115 ATTATTTAACTACATAAAC-AAATATAAT
1 ATTATTTAACTA-ATAAACGAAATACAAT
114803143 A
1 A
114803144 ATTTTGCCAT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
28 20 0.80
29 5 0.20
ACGTcount: A:0.51, C:0.11, G:0.05, T:0.33
Consensus pattern (28 bp):
ATTATTTAACTAATAAACGAAATACAAT
Found at i:114806444 original size:31 final size:30
Alignment explanation
Indices: 114806380--114806506 Score: 98
Period size: 31 Copynumber: 4.1 Consensus size: 30
114806370 TAGGTCCCAT
*
114806380 CAAAATTTTAAGAAAATTTAATTA-AGC-CTTC
1 CAAAATTTTTA-AAAATTTAATTATA-CTC-TC
*
114806411 CAAAAGTTTTAAAAACTTTAATTATACTCTC
1 CAAAATTTTTAAAAA-TTTAATTATACTCTC
* * *
114806442 CAAAATTTTTGAAAATTCTCATGAATACTCTC
1 CAAAATTTTTAAAAATT-TAAT-TATACTCTC
* * *
114806474 C-AAATTTTTATAAATTTTAATTAAACCCTC
1 CAAAATTTTTA-AAAATTTAATTATACTCTC
114806504 CAA
1 CAA
114806507 TGTTTTTGGA
Statistics
Matches: 77, Mismatches: 12, Indels: 14
0.75 0.12 0.14
Matches are distributed among these distances:
30 13 0.17
31 48 0.62
32 16 0.21
ACGTcount: A:0.42, C:0.17, G:0.04, T:0.38
Consensus pattern (30 bp):
CAAAATTTTTAAAAATTTAATTATACTCTC
Found at i:114812340 original size:327 final size:326
Alignment explanation
Indices: 114811863--114812462 Score: 780
Period size: 327 Copynumber: 1.8 Consensus size: 326
114811853 TTCTCAAGGA
* * *
114811863 TGGTTGGCTTGCACTTCCTTTGATCCTGGCAAACAATCCTTATGGTGGAAGAGATAAGATTGACG
1 TGGTTAGCTTGCACTTCCCTTGATCCTGGCAAACAATCCTTATGGTGGAAGAGATAAGACTGACG
* * *
114811928 AAACCTGACGGGCGGAGTTAGGTGGTGAAGTGATCATGGTACTTTGGCGCAGATTGCCAAGTAGC
66 AAACCAGACGGGCGGA--TAGGT-GTGAAGTGATCACGGTACTTTGGCGCAGATTGCCAAGTAGA
** * *
114811993 GTACATATTTGGAGCAGTCCTTATGGTGGAAGAGATAAGACGGACGAAACCAGATTGGCAGAGTT
128 GTACATAAATGGAACAGTCCTTATGGTGGAAGAGATAAGACGGACAAAACCAGA-TGG--GAGTT
* * * * * ** * *
114812058 AGATGG-TGGTTGTCTTTGATAGGCTCGTTGCTCCTTCTGATGATCTCTTGTTAGGCGAGTAATG
190 AG-GGGACGATTGTC-TTGATAGCCTCGTTGATCCTTCCCATGATCCCTTGTTAGGCGAGAAATG
*
114812122 TGGCATCACCAAGATTTCAAAATACGTGGGTGGCAAGTGATGATTGTCTTATTGAGTGACCTTAT
253 TGACATCACCAAGATTTCAAAATACGTGGGTGGCAAGTGATGATTGTCTTATTGAGTGACCTTAT
114812187 TATTAGGGG
318 TATTAGGGG
*
114812196 TGGTTAGCTTGCACATTCCCTTGATCCTGGCTGAACAATCCTTATGGTGGAAGAGATAAGACTGA
1 TGGTTAGCTTGCAC-TTCCCTTGATCCTGGC-AAACAATCCTTATGGTGGAAGAGATAAGACTGA
* * * * * * *
114812261 TGGAACCAGATGGG-TGA-A-GT-T-AGGTGATCACGGTACTTTGGCGCGGATTGCCAAGTGGAG
64 CGAAACCAGACGGGCGGATAGGTGTGAAGTGATCACGGTACTTTGGCGCAGATTGCCAAGTAGAG
*
114812321 TACATAAATGGAACAGTCCTTATGGTGGAAGAGATAAGACTGACAAAACCAGATGGGAGTTAGGG
129 TACATAAATGGAACAGTCCTTATGGTGGAAGAGATAAGACGGACAAAACCAGATGGGAGTTAGGG
* *
114812386 GACGATTGTCTTGATAGCCTCGTTGATCCTTCCCATGATCCCTTGTTAGGTGAGAAATGTGATAT
194 GACGATTGTCTTGATAGCCTCGTTGATCCTTCCCATGATCCCTTGTTAGGCGAGAAATGTGACAT
*
114812451 CATCAAGATTTC
259 CACCAAGATTTC
114812463 GAAGTATATG
Statistics
Matches: 232, Mismatches: 32, Indels: 16
0.83 0.11 0.06
Matches are distributed among these distances:
323 59 0.25
324 13 0.06
326 3 0.01
327 82 0.35
328 1 0.00
330 2 0.01
331 1 0.00
333 13 0.06
334 17 0.07
335 41 0.18
ACGTcount: A:0.26, C:0.16, G:0.29, T:0.29
Consensus pattern (326 bp):
TGGTTAGCTTGCACTTCCCTTGATCCTGGCAAACAATCCTTATGGTGGAAGAGATAAGACTGACG
AAACCAGACGGGCGGATAGGTGTGAAGTGATCACGGTACTTTGGCGCAGATTGCCAAGTAGAGTA
CATAAATGGAACAGTCCTTATGGTGGAAGAGATAAGACGGACAAAACCAGATGGGAGTTAGGGGA
CGATTGTCTTGATAGCCTCGTTGATCCTTCCCATGATCCCTTGTTAGGCGAGAAATGTGACATCA
CCAAGATTTCAAAATACGTGGGTGGCAAGTGATGATTGTCTTATTGAGTGACCTTATTATTAGGG
G
Found at i:114815622 original size:29 final size:29
Alignment explanation
Indices: 114815580--114815639 Score: 120
Period size: 29 Copynumber: 2.1 Consensus size: 29
114815570 ATTCCCATTG
114815580 TTAGAATCTATGTTCCAAGCACTCTTCAT
1 TTAGAATCTATGTTCCAAGCACTCTTCAT
114815609 TTAGAATCTATGTTCCAAGCACTCTTCAT
1 TTAGAATCTATGTTCCAAGCACTCTTCAT
114815638 TT
1 TT
114815640 TCTCGCATCC
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 31 1.00
ACGTcount: A:0.27, C:0.23, G:0.10, T:0.40
Consensus pattern (29 bp):
TTAGAATCTATGTTCCAAGCACTCTTCAT
Found at i:114821450 original size:21 final size:21
Alignment explanation
Indices: 114821392--114821459 Score: 56
Period size: 19 Copynumber: 3.4 Consensus size: 21
114821382 TTAAATATAA
*
114821392 ATTTTGGAATTTTTATAAA--T
1 ATTTT-GAATTTTTAAAAATTT
**
114821412 ATTTTGAA-AATT-AAAATTT
1 ATTTTGAATTTTTAAAAATTT
114821431 ATTTTGAATTTTTAAAAATTT
1 ATTTTGAATTTTTAAAAATTT
114821452 -TTGTTGAA
1 ATT-TTGAA
114821460 AGAGAGACCA
Statistics
Matches: 38, Mismatches: 5, Indels: 9
0.73 0.10 0.17
Matches are distributed among these distances:
17 3 0.08
18 2 0.05
19 12 0.32
20 9 0.24
21 12 0.32
ACGTcount: A:0.38, C:0.00, G:0.09, T:0.53
Consensus pattern (21 bp):
ATTTTGAATTTTTAAAAATTT
Found at i:114825650 original size:7 final size:7
Alignment explanation
Indices: 114825638--114825670 Score: 57
Period size: 7 Copynumber: 4.6 Consensus size: 7
114825628 ATAATAAAAT
114825638 ATATAAA
1 ATATAAA
114825645 ATATAAA
1 ATATAAA
114825652 ATATAAA
1 ATATAAA
114825659 ATATCAAA
1 ATAT-AAA
114825667 ATAT
1 ATAT
114825671 TAGAATAATA
Statistics
Matches: 25, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
7 18 0.72
8 7 0.28
ACGTcount: A:0.67, C:0.03, G:0.00, T:0.30
Consensus pattern (7 bp):
ATATAAA
Found at i:114825677 original size:23 final size:23
Alignment explanation
Indices: 114825626--114825677 Score: 61
Period size: 23 Copynumber: 2.2 Consensus size: 23
114825616 ACAATGATGT
*
114825626 GAATAATAAAATATATAAAATATA
1 GAAT-ATAAAATATACAAAATATA
*
114825650 AAATATAAAATAT-CAAAATATTA
1 GAATATAAAATATACAAAATA-TA
114825673 GAATA
1 GAATA
114825678 ATAATAATTA
Statistics
Matches: 24, Mismatches: 3, Indels: 3
0.80 0.10 0.10
Matches are distributed among these distances:
22 6 0.25
23 15 0.62
24 3 0.12
ACGTcount: A:0.65, C:0.02, G:0.04, T:0.29
Consensus pattern (23 bp):
GAATATAAAATATACAAAATATA
Found at i:114825858 original size:25 final size:25
Alignment explanation
Indices: 114825830--114825894 Score: 91
Period size: 25 Copynumber: 2.7 Consensus size: 25
114825820 CGTGATAATA
*
114825830 TTAAAAATATGTACATAATATAGTG
1 TTAAAAATATATACATAATATAGTG
114825855 TTAAAAATATATACATAATATA--G
1 TTAAAAATATATACATAATATAGTG
*
114825878 TT-AAGATATATACATAA
1 TTAAAAATATATACATAA
114825895 GATAACATGT
Statistics
Matches: 38, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
22 14 0.37
23 3 0.08
25 21 0.55
ACGTcount: A:0.52, C:0.05, G:0.08, T:0.35
Consensus pattern (25 bp):
TTAAAAATATATACATAATATAGTG
Found at i:114825945 original size:25 final size:25
Alignment explanation
Indices: 114825917--114826050 Score: 86
Period size: 25 Copynumber: 5.6 Consensus size: 25
114825907 AAAAATATAT
114825917 ATATATAAATAATATAATATTAAAG
1 ATATATAAATAATATAATATTAAAG
* * * *
114825942 ATATATAAATAAAATAGTATAAAAT
1 ATATATAAATAATATAATATTAAAG
* *
114825967 ATATATATACGTAATATAGA-ATTTAA-
1 ATATATA-A-ATAATATA-ATATTAAAG
** *
114825993 A-ATATACCTAATAT-AT-TAAAAG
1 ATATATAAATAATATAATATTAAAG
*
114826015 A-ATATATATAATATAATATT-AAG
1 ATATATAAATAATATAATATTAAAG
*
114826038 AAATAT-AATAATA
1 ATATATAAATAATA
114826051 ACAAAAAAAA
Statistics
Matches: 84, Mismatches: 17, Indels: 18
0.71 0.14 0.15
Matches are distributed among these distances:
21 4 0.05
22 12 0.14
23 18 0.21
24 5 0.06
25 33 0.39
26 2 0.02
27 10 0.12
ACGTcount: A:0.58, C:0.02, G:0.04, T:0.35
Consensus pattern (25 bp):
ATATATAAATAATATAATATTAAAG
Found at i:114826367 original size:17 final size:18
Alignment explanation
Indices: 114826313--114826358 Score: 92
Period size: 18 Copynumber: 2.6 Consensus size: 18
114826303 CTTTGATTAA
114826313 TCTCCAAAAAACCTAGCT
1 TCTCCAAAAAACCTAGCT
114826331 TCTCCAAAAAACCTAGCT
1 TCTCCAAAAAACCTAGCT
114826349 TCTCCAAAAA
1 TCTCCAAAAA
114826359 CTAGCCTTCA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 28 1.00
ACGTcount: A:0.41, C:0.33, G:0.04, T:0.22
Consensus pattern (18 bp):
TCTCCAAAAAACCTAGCT
Found at i:114826616 original size:30 final size:31
Alignment explanation
Indices: 114826546--114826690 Score: 183
Period size: 30 Copynumber: 4.8 Consensus size: 31
114826536 TAGGTACAAG
* * *
114826546 TGGTGGTGGAGCAA-GTGTGGTTAGTAGAGT
1 TGGTGGTGGAGAAAGGTGTGGCTAGTGGAGT
* ** * *
114826576 AGGTAATGGAGCAA-GTGTGGCTAGTGGATT
1 TGGTGGTGGAGAAAGGTGTGGCTAGTGGAGT
114826606 TGGTGGTGGAG-AAGGTGTGGCTAGTGGAGT
1 TGGTGGTGGAGAAAGGTGTGGCTAGTGGAGT
114826636 TGGTGGTGGA-AAAGGTGTGGCTAGTGGAGT
1 TGGTGGTGGAGAAAGGTGTGGCTAGTGGAGT
114826666 TGGTGGTGGA-AAAGGTGTGGCTAGT
1 TGGTGGTGGAGAAAGGTGTGGCTAGT
114826691 TGAGAAAAGT
Statistics
Matches: 103, Mismatches: 10, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
29 2 0.02
30 101 0.98
ACGTcount: A:0.21, C:0.04, G:0.48, T:0.28
Consensus pattern (31 bp):
TGGTGGTGGAGAAAGGTGTGGCTAGTGGAGT
Found at i:114827622 original size:77 final size:76
Alignment explanation
Indices: 114827403--114827653 Score: 389
Period size: 76 Copynumber: 3.3 Consensus size: 76
114827393 ATGTAAACCC
* *
114827403 AAGGCTCAACTCACATCTCGCAATATGAGTTGA-TTTTTGAAAAGCAGAAATTGAAAA-CGCCTC
1 AAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAAGCAGAAATTGAAAATAG-CTC
** * *
114827466 AGCGTGTGACCC
65 AGCACGTGAGCA
*
114827478 GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAAGCAGAAATTGAAAATAGCTCA
1 AAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAAGCAGAAATTGAAAATAGCTCA
114827543 GCACGTGAGCA
66 GCACGTGAGCA
*
114827554 AAGGCTCAACTCACCTCTCACAATATGAGTTGATTCTTTTGAAAAGCAGAAATTGAAAATAGCTC
1 AAGGCTCAACTCACCTCTCGCAATATGAGTTGATT-TTTTGAAAAGCAGAAATTGAAAATAGCTC
114827619 AGCACGTGAGCA
65 AGCACGTGAGCA
*
114827631 AAGGCTCAACTCACTTCTCGCAA
1 AAGGCTCAACTCACCTCTCGCAA
114827654 AAGTAGATTT
Statistics
Matches: 162, Mismatches: 11, Indels: 4
0.92 0.06 0.02
Matches are distributed among these distances:
75 31 0.19
76 68 0.42
77 63 0.39
ACGTcount: A:0.34, C:0.22, G:0.19, T:0.24
Consensus pattern (76 bp):
AAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAAGCAGAAATTGAAAATAGCTCA
GCACGTGAGCA
Found at i:114827760 original size:14 final size:14
Alignment explanation
Indices: 114827724--114827774 Score: 50
Period size: 14 Copynumber: 3.6 Consensus size: 14
114827714 GAGTTGATTT
* *
114827724 TTGAAAAATATAAA
1 TTGAAAAACAGAAA
114827738 TTGAAAAAAACAGAAA
1 TTG--AAAAACAGAAA
*
114827754 TTGAAAAGCAGAAA
1 TTGAAAAACAGAAA
114827768 TT-AAAAA
1 TTGAAAAA
114827775 GACCTCAGCA
Statistics
Matches: 31, Mismatches: 4, Indels: 5
0.77 0.10 0.12
Matches are distributed among these distances:
13 4 0.13
14 15 0.48
16 12 0.39
ACGTcount: A:0.65, C:0.04, G:0.12, T:0.20
Consensus pattern (14 bp):
TTGAAAAACAGAAA
Found at i:114827975 original size:14 final size:14
Alignment explanation
Indices: 114827956--114827983 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
114827946 TTTTTTTTAC
114827956 GAACAGAAATTGAA
1 GAACAGAAATTGAA
114827970 GAACAGAAATTGAA
1 GAACAGAAATTGAA
114827984 AAGACCTCAG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.57, C:0.07, G:0.21, T:0.14
Consensus pattern (14 bp):
GAACAGAAATTGAA
Found at i:114828006 original size:89 final size:88
Alignment explanation
Indices: 114827902--114828148 Score: 338
Period size: 89 Copynumber: 2.8 Consensus size: 88
114827892 TTGAAAAAAA
* *
114827902 CAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTACGAACAGAAATT
1 CAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAC-AACAGAAATT
*
114827967 GAAGAA-CAGAAATTGAAAAGACCT
65 GAA-AAGCAGAAATTAAAAAGACCT
* * *
114827991 CAGCGTGTCCCGAGGCTCAACTCACCTTTCGCAATATGAGTTGA-TTTTTTGA-AAAATAAATTG
1 CAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGACAACAGAAATTG
114828054 AAAAGCAGAAATTAAAAAGACCT
66 AAAAGCAGAAATTAAAAAGACCT
** * *
114828077 CAGCATGTGAGCCGAGACTCAACTCACCTCTCACAATATGAGTTGATTTTTTTGACAAACAGAAA
1 CAGC--GTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAC-AACAGAAA
114828142 TTGAAAA
63 TTGAAAA
114828149 ATACCTCAGC
Statistics
Matches: 139, Mismatches: 13, Indels: 10
0.86 0.08 0.06
Matches are distributed among these distances:
85 2 0.01
86 32 0.23
88 42 0.30
89 50 0.36
91 13 0.09
ACGTcount: A:0.36, C:0.20, G:0.18, T:0.27
Consensus pattern (88 bp):
CAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGACAACAGAAATTG
AAAAGCAGAAATTAAAAAGACCT
Found at i:114828119 original size:88 final size:87
Alignment explanation
Indices: 114827902--114828227 Score: 322
Period size: 89 Copynumber: 3.8 Consensus size: 87
114827892 TTGAAAAAAA
* * * * *
114827902 CAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTACGAACAGAAATT
1 CAGCGTGACCCGAGACTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAC-AAAAGAAATT
*
114827967 GAAGAACAGAAATTGAAAAGACCT
65 GAA-AACAGAAATTAAAAAGACCT
* * * *
114827991 CAGCGTGTCCCGAGGCTCAACTCACCTTTCGCAATATGAGTTGA-TTTTTTGA-AAAATAAATTG
1 CAGCGTGACCCGAGACTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGACAAAAGAAATTG
114828054 AAAAGCAGAAATTAAAAAGACCT
66 AAAA-CAGAAATTAAAAAGACCT
* *
114828077 CAGCATGTGAGCCGAGACTCAACTCACCTCTCACAATATGAGTTGATTTTTTTGACAAACAGAAA
1 CAGC--GTGACCCGAGACTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGACAAA-AGAAA
114828142 TTG---A-A-AAA-T------ACCT
63 TTGAAAACAGAAATTAAAAAGACCT
* * * *
114828155 CAGCGTGTAAGCCAAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTGAAAAATAGAAA
1 CAGCGTG--ACCCGAGACTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGACAAA-AGAAA
114828219 TTGAAAACA
63 TTGAAAACA
114828228 CCTCAGCATG
Statistics
Matches: 208, Mismatches: 17, Indels: 32
0.81 0.07 0.12
Matches are distributed among these distances:
76 3 0.01
77 19 0.09
78 42 0.20
80 1 0.00
81 1 0.00
84 1 0.00
85 5 0.02
86 33 0.16
88 43 0.21
89 50 0.24
90 3 0.01
91 7 0.03
ACGTcount: A:0.36, C:0.20, G:0.17, T:0.27
Consensus pattern (87 bp):
CAGCGTGACCCGAGACTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGACAAAAGAAATTG
AAAACAGAAATTAAAAAGACCT
Found at i:114828196 original size:78 final size:75
Alignment explanation
Indices: 114828051--114828292 Score: 316
Period size: 78 Copynumber: 3.2 Consensus size: 75
114828041 GAAAAATAAA
* * * *
114828051 TTGAAAAGCAGAAATT-AAAAAGACCTCAGCATGTGAGCCGAGACTCAACTCACCTCTCACAATA
1 TTGAAAAACAGAAATTGAAAAACACCTCAGCATGT-AGCC-AGGCTCAACTCACCTCTCGCAATA
114828115 TGAGTTGATTTTT
64 TGAGTTGA-TTTT
* * *
114828128 TTGACAAACAGAAATTGAAAAATACCTCAGCGTGTAAGCCAAGGCTCAACTCACCTCTCGCAATA
1 TTGAAAAACAGAAATTGAAAAACACCTCAGCATGT-AGCC-AGGCTCAACTCACCTCTCGCAATA
114828193 TGAGTTGATTTT
64 TGAGTTGATTTT
*
114828205 TTGAAAAATAGAAATTG-AAAACACCTCAGCATGT-G--AGGCTCAACTCACCTCTCGCAATATG
1 TTGAAAAACAGAAATTGAAAAACACCTCAGCATGTAGCCAGGCTCAACTCACCTCTCGCAATATG
114828266 AGTTGA-TTT
66 AGTTGATTTT
*
114828275 TTGAAAAACATAAATTGA
1 TTGAAAAACAGAAATTGA
114828293 GCAGAAATTG
Statistics
Matches: 149, Mismatches: 14, Indels: 10
0.86 0.08 0.06
Matches are distributed among these distances:
70 18 0.12
71 32 0.21
74 1 0.01
76 15 0.10
77 33 0.22
78 50 0.34
ACGTcount: A:0.37, C:0.20, G:0.17, T:0.26
Consensus pattern (75 bp):
TTGAAAAACAGAAATTGAAAAACACCTCAGCATGTAGCCAGGCTCAACTCACCTCTCGCAATATG
AGTTGATTTT
Found at i:114828259 original size:71 final size:71
Alignment explanation
Indices: 114828051--114828454 Score: 302
Period size: 69 Copynumber: 5.3 Consensus size: 71
114828041 GAAAAATAAA
** * * *
114828051 TTGAAAAGCAGAAATTAAAAAGACCTCAGCATGTGAGCCGAGACTCAACTCACCTCTCACAATAT
1 TTGAAAAATAGAAATTGAAAATACCTCAGCATGTGA---G-G-CTCAACTCACCTCTCGCAATAT
114828116 GAGTTGATTTTT
61 GAGTTGA-TTTT
* * *
114828128 TTGACAAACAGAAATTGAAAAATACCTCAGCGTGTAAGCCAAGGCTCAACTCACCTCTCGCAATA
1 TTGAAAAATAGAAATTG-AAAATACCTCAGCATGT--G---AGGCTCAACTCACCTCTCGCAATA
114828193 TGAGTTGATTTT
60 TGAGTTGATTTT
*
114828205 TTGAAAAATAGAAATTGAAAACACCTCAGCATGTGAGGCTCAACTCACCTCTCGCAATATGAGTT
1 TTGAAAAATAGAAATTGAAAATACCTCAGCATGTGAGGCTCAACTCACCTCTCGCAATATGAGTT
114828270 GA-TTT
66 GATTTT
** * *
114828275 TTGAAAAACATAAATTGAGCAGAAATTGAAAATACCTCAACGGGTCTTGAGGTTCAACTCACCTC
1 TTG----A-A-AAA-T----AGAAATTGAAAATACCTC-A-GCAT-GTGAGGCTCAACTCACCTC
114828340 TCGCAATATGAGTTGATTTT
52 TCGCAATATGAGTTGATTTT
* * *
114828360 TATG----AT--AAATTGAAAATACCTCAATGTGACT-TGAGGTTCAACTCACCTCTCACAATAT
1 T-TGAAAAATAGAAATTGAAAATACCTC-A-G-CA-TGTGAGGCTCAACTCACCTCTCGCAATAT
114828418 GAGTTGATTTT
61 GAGTTGATTTT
114828429 TTGAATTAAAATAGAAATTGAAAATA
1 TTG-A--AAAATAGAAATTGAAAATA
114828455 GAAATGGAAA
Statistics
Matches: 276, Mismatches: 18, Indels: 66
0.77 0.05 0.18
Matches are distributed among these distances:
68 2 0.01
69 57 0.21
70 7 0.03
71 33 0.12
74 2 0.01
75 4 0.01
76 19 0.07
77 46 0.17
78 43 0.16
79 1 0.00
80 2 0.01
81 17 0.06
82 1 0.00
83 3 0.01
84 33 0.12
85 4 0.01
86 2 0.01
ACGTcount: A:0.37, C:0.18, G:0.16, T:0.29
Consensus pattern (71 bp):
TTGAAAAATAGAAATTGAAAATACCTCAGCATGTGAGGCTCAACTCACCTCTCGCAATATGAGTT
GATTTT
Found at i:114828454 original size:13 final size:13
Alignment explanation
Indices: 114828432--114828465 Score: 52
Period size: 13 Copynumber: 2.7 Consensus size: 13
114828422 TGATTTTTTG
114828432 AATT-AAAATAGA
1 AATTGAAAATAGA
114828444 AATTGAAAATAGA
1 AATTGAAAATAGA
*
114828457 AATGGAAAA
1 AATTGAAAA
114828466 CACCTCAGCG
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
12 4 0.20
13 16 0.80
ACGTcount: A:0.65, C:0.00, G:0.15, T:0.21
Consensus pattern (13 bp):
AATTGAAAATAGA
Found at i:114828504 original size:157 final size:151
Alignment explanation
Indices: 114828173--114828518 Score: 416
Period size: 157 Copynumber: 2.2 Consensus size: 151
114828163 AAGCCAAGGC
114828173 TCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAAATAGAAATTGAAAACACCTCAGCATG
1 TCAACTCACCTCTCGCAATATGAGTTGATTTTTTG---AATA-AAATTGAAAACACCTCAGCATG
* * *
114828238 TGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACATAAATTGAGCAGAAATTG
62 TGAGGCTCAACTCACCTCTCACAATATGAGTTGATTTTTGAAAAACATAAATTGAACAGAAATGG
* *
114828303 AAAATACCTCAACGGGTCTTGAGGT
127 AAAACACCTCAACGCGTCTTGAGGT
* *
114828328 TCAACTCACCTCTCGCAATATGAGTTGATTTTTATG-AT-AAATTGAAAATACCTCAATGTGACT
1 TCAACTCACCTCTCGCAATATGAGTTGATTTTT-TGAATAAAATTGAAAACACCTC-A-G-CA-T
* *
114828391 -TGAGGTTCAACTCACCTCTCACAATATGAGTTGATTTTTTGAATTAAA-ATAGAAATTGAAAAT
61 GTGAGGCTCAACTCACCTCTCACAATATGAGTTGA-TTTTTGAA--AAACAT--AAATTG--AAC
114828454 AGAAATGGAAAACACCTC-A-GCGTCTTGAGGT
119 AGAAATGGAAAACACCTCAACGCGTCTTGAGGT
*
114828485 TCAACTCACCTCTCGCAATATGAGCTGATTTTTT
1 TCAACTCACCTCTCGCAATATGAGTTGATTTTTT
114828519 TGAAACACAT
Statistics
Matches: 169, Mismatches: 10, Indels: 23
0.84 0.05 0.11
Matches are distributed among these distances:
150 15 0.09
151 1 0.01
152 3 0.02
153 33 0.20
154 9 0.05
155 35 0.21
156 6 0.04
157 49 0.29
158 1 0.01
159 17 0.10
ACGTcount: A:0.34, C:0.18, G:0.16, T:0.31
Consensus pattern (151 bp):
TCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAATAAAATTGAAAACACCTCAGCATGTGAG
GCTCAACTCACCTCTCACAATATGAGTTGATTTTTGAAAAACATAAATTGAACAGAAATGGAAAA
CACCTCAACGCGTCTTGAGGT
Found at i:114828674 original size:75 final size:73
Alignment explanation
Indices: 114828583--114828847 Score: 347
Period size: 77 Copynumber: 3.6 Consensus size: 73
114828573 CGACGTGTGG
*
114828583 CCCGAGACTCAACTCACCTCTCGCAATATGAGTTGATTCTTTTAAAAAGCAAAAATTGAAAATAC
1 CCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATT-TTTTAAAAA-CAAAAATTGAAAATAC
114828648 CTCAGCGTGT
64 CTCAGCGTGT
* *
114828658 CCCGAGGCTCAACTCACCTCTCACAATATGAGTTGATTTTTTCGATAAAA-ATAGAATTTGAAAA
1 CCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTT--A-AAAACA-A-AAATTGAAAA
*
114828722 TATCTCAGCGTGT
61 TACCTCAGCGTGT
* * * *
114828735 CCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGACAAACAAAAATTGAAATTACCT
1 CCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTAAAAACAAAAATTGAAAATACCT
114828800 CAGC--GT
66 CAGCGTGT
** *
114828806 CTTGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTT
1 CCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTT
114828848 TTGAAACATA
Statistics
Matches: 170, Mismatches: 14, Indels: 16
0.85 0.07 0.08
Matches are distributed among these distances:
71 41 0.24
73 16 0.09
74 8 0.05
75 39 0.23
76 2 0.01
77 64 0.38
ACGTcount: A:0.31, C:0.23, G:0.15, T:0.31
Consensus pattern (73 bp):
CCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTAAAAACAAAAATTGAAAATACCT
CAGCGTGT
Found at i:114828975 original size:72 final size:73
Alignment explanation
Indices: 114828857--114828998 Score: 223
Period size: 72 Copynumber: 2.0 Consensus size: 73
114828847 TTTGAAACAT
* * *
114828857 AAATTAAAAAAACGAAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACCCACCTCTCGCAAT
1 AAATTAAAAAAACAAAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACCCACCTCTCGCAAT
114828922 ATGAGTTG
66 ATGAGTTG
* * *
114828930 AAATT-AAAACACAAAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTTGCAAT
1 AAATTAAAAAAACAAAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACCCACCTCTCGCAAT
114828994 ATGAG
66 ATGAG
114828999 CTGATTTTGA
Statistics
Matches: 63, Mismatches: 6, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
72 58 0.92
73 5 0.08
ACGTcount: A:0.39, C:0.25, G:0.15, T:0.21
Consensus pattern (73 bp):
AAATTAAAAAAACAAAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACCCACCTCTCGCAAT
ATGAGTTG
Found at i:114829025 original size:160 final size:157
Alignment explanation
Indices: 114828590--114829012 Score: 474
Period size: 160 Copynumber: 2.7 Consensus size: 157
114828580 TGGCCCGAGA
* ** *
114828590 CTCAACTCACCTCTCGCAATATGAGTTGATTCTTTTAAAAAGCAAAAATTGAAAATACCTCAGCG
1 CTCAACCCACCTCTCGCAATATGAGTTGA-TAATTGAAAAA-CAAAAATTGAAAATACCTCAGC-
* * ** *
114828655 TGTCCCGAGGCTCAACTCACCTCTCACAATATGAGTTGATTTTT------TCGA-TAAAAATA-G
63 -GTCCCGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTTGAAAAATAAATTAAAAAAACG
* *
114828712 -AATTTGAAAATATCTCAGCGTGTCCTGAGG
127 AAAATTGAAAATACCTCAGCGTGTCCTGAGG
* ** * *
114828742 CTCAACTCACCTCTCGCAATATGAGTTGATTTTTGACAAACAAAAATTGAAATTACCTCAGCGTC
1 CTCAACCCACCTCTCGCAATATGAGTTGATAATTGAAAAACAAAAATTGAAAATACCTCAGCGTC
** * * *
114828807 TTGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTTTTGAAACATAAATTAAAAAAACGA
66 CCGAGGCTCAACTCACCTCTCGCAATATGAGCTGA---TTTTTGAAAAATAAATTAAAAAAACGA
114828872 AAATTGAAAATACCTCAGCGTGTCCTGAGG
128 AAATTGAAAATACCTCAGCGTGTCCTGAGG
114828902 CTCAACCCACCTCTCGCAATATGAGTTGA-AATT-AAAACACAAAAATTGAAAATACCTCAGCGT
1 CTCAACCCACCTCTCGCAATATGAGTTGATAATTGAAAA-ACAAAAATTGAAAATACCTCAGCGT
*
114828965 GCCCCGAGGCTCAACTCACCTCTTGCAATATGAGCTGA-TTTTGAAAAA
65 --CCCGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTTGAAAAA
114829013 GTAGAAATTA
Statistics
Matches: 232, Mismatches: 24, Indels: 25
0.83 0.09 0.09
Matches are distributed among these distances:
148 34 0.15
150 21 0.09
151 13 0.06
152 29 0.12
157 11 0.05
158 10 0.04
159 27 0.12
160 56 0.24
161 31 0.13
ACGTcount: A:0.35, C:0.22, G:0.15, T:0.28
Consensus pattern (157 bp):
CTCAACCCACCTCTCGCAATATGAGTTGATAATTGAAAAACAAAAATTGAAAATACCTCAGCGTC
CCGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTTGAAAAATAAATTAAAAAAACGAAAA
TTGAAAATACCTCAGCGTGTCCTGAGG
Found at i:114829329 original size:77 final size:77
Alignment explanation
Indices: 114829151--114829493 Score: 432
Period size: 77 Copynumber: 4.5 Consensus size: 77
114829141 AGTGTGTAAT
* * *
114829151 CTGAAGCTCAACTCACCTCTCGCAATATGAGTTGA-TATTTTTTTAAAAACAGAAATTGAAAATA
1 CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTTTGAAAACAGAAATTGAAAATA
* *
114829215 CCTCAGCATGTGAAC
66 CCTCA--ACGTG-TC
*
114829230 C-GAGGCTCAACTCACCTCTCGCAATATAAGTTGATTTTTTTTTTGAAAACAGAAATTGAAAATA
1 CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTTTGAAAACAGAAATTGAAAATA
114829294 CCTCAACGTGTC
66 CCTCAACGTGTC
* ** * * *
114829306 TTGAGGCTCAACTCATTTCTCGCAATATAAGTTGA-----ATTTTGAAAACAGAAATTGAAATTA
1 CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTTTGAAAACAGAAATTGAAAATA
*
114829366 CCTCAGCGTGTC
66 CCTCAACGTGTC
** *
114829378 CTGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTTTTTTT-AACAACAGAAATTGAAATT
1 CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTTTGAA-AACAGAAATTGAAAAT
*
114829442 ACCTCAGCGTGTC
65 ACCTCAACGTGTC
*
114829455 CTGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTT
1 CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
114829494 GAAAAACAAA
Statistics
Matches: 238, Mismatches: 18, Indels: 18
0.87 0.07 0.07
Matches are distributed among these distances:
72 67 0.28
76 3 0.01
77 104 0.44
78 31 0.13
79 33 0.14
ACGTcount: A:0.32, C:0.20, G:0.15, T:0.32
Consensus pattern (77 bp):
CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTTTGAAAACAGAAATTGAAAATA
CCTCAACGTGTC
Found at i:114829411 original size:149 final size:150
Alignment explanation
Indices: 114829151--114829511 Score: 480
Period size: 149 Copynumber: 2.4 Consensus size: 150
114829141 AGTGTGTAAT
* *
114829151 CTGAAGCTCAACTCACCTCTCGCAATATGAGTTGATATTTTTTTAAAAACAGAAATTGAAAATAC
1 CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-A---TTTTGAAAACAGAAATTGAAAATAC
114829216 CTCAGCATGTGAACCGAGGCTCAACTCACCTCTCGCAATATAAGTTGATTTTTTTTTTGAA-AAC
62 CTCAGCA-GTGAACCGAGGCTCAACTCACCTCTCGCAATATAAGTTGATTTTTTTTTT-AACAAC
114829280 AGAAATTGAAAATACCTCAACGTGTC
125 AGAAATTGAAAATACCTCAACGTGTC
* ** * *
114829306 TTGAGGCTCAACTCATTTCTCGCAATATAAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCA
1 CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAAATACCTCA
* ** *
114829371 GC-GTG-TCCTGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTTTTTTTAACAACAGAAA
66 GCAGTGAACC-GAGGCTCAACTCACCTCTCGCAATATAAGTTGATTTTTTTTTTAACAACAGAAA
* *
114829434 TTGAAATTACCTCAGCGTGTC
130 TTGAAAATACCTCAACGTGTC
* *
114829455 CTGAGGCTCAACTCACCTCTAGCAATATGAGTTG-ATTTTGAAAAACAAAAATT-AAAA
1 CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAATTTTG-AAAACAGAAATTGAAAA
114829512 GCTTAACTCA
Statistics
Matches: 183, Mismatches: 20, Indels: 13
0.85 0.09 0.06
Matches are distributed among these distances:
148 13 0.07
149 110 0.60
151 29 0.16
154 1 0.01
155 30 0.16
ACGTcount: A:0.34, C:0.19, G:0.15, T:0.31
Consensus pattern (150 bp):
CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAAATACCTCA
GCAGTGAACCGAGGCTCAACTCACCTCTCGCAATATAAGTTGATTTTTTTTTTAACAACAGAAAT
TGAAAATACCTCAACGTGTC
Found at i:114831614 original size:40 final size:40
Alignment explanation
Indices: 114831546--114831791 Score: 309
Period size: 40 Copynumber: 6.2 Consensus size: 40
114831536 CGGAATTTAG
* * * * *
114831546 CCGGATATAACCACAAGCATAATTGCCTTCGGGTCTTAAC
1 CCGGATAAAATCACTAGCACAAATGCCTTCGGGTCTTAAC
* * * * *
114831586 CCGGGT-ATAGCAACTCGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATAAAATC-ACTAGCACAAATGCCTTCGGGTCTTAAC
* * *
114831626 CCGGAT-ATATCAACTCGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATAAAATC-ACTAGCACAAATGCCTTCGGGTCTTAAC
114831666 CCGGATAAAATCACTAGCACAAATGCCTTC-GGTCTTAAC
1 CCGGATAAAATCACTAGCACAAATGCCTTCGGGTCTTAAC
*
114831705 CCGGATAAAATCACTAGCATAAATGCCTTCGGGTCTTAAC
1 CCGGATAAAATCACTAGCACAAATGCCTTCGGGTCTTAAC
* *
114831745 CCGGATAAAATCACTAGCACAAATGCCTTCGGGACTTAGC
1 CCGGATAAAATCACTAGCACAAATGCCTTCGGGTCTTAAC
114831785 CCGGATA
1 CCGGATA
114831792 TCATTCAAAT
Statistics
Matches: 185, Mismatches: 18, Indels: 6
0.89 0.09 0.03
Matches are distributed among these distances:
39 39 0.21
40 142 0.77
41 4 0.02
ACGTcount: A:0.29, C:0.28, G:0.20, T:0.23
Consensus pattern (40 bp):
CCGGATAAAATCACTAGCACAAATGCCTTCGGGTCTTAAC
Found at i:114831748 original size:79 final size:80
Alignment explanation
Indices: 114831542--114831791 Score: 328
Period size: 79 Copynumber: 3.1 Consensus size: 80
114831532 TCTTCGGAAT
* * * * * * * *
114831542 TTAG-CCGGATATAACCACAAGCATAATTGCCTTCGGGTCTTAACCCGGGT-ATAGCAACTCGCA
1 TTAGCCCGGATAAAATCACTAGCATAAATGCCTTCGGGTCTTAACCCGGATAAAATC-ACTAGCA
114831605 CAAATGCCTTCGGGTC
65 CAAATGCCTTCGGGTC
* * * *
114831621 TTAGCCCGGAT-ATATCAACTCGCACAAATGCCTTCGGGTCTTAGCCCGGATAAAATCACTAGCA
1 TTAGCCCGGATAAAATC-ACTAGCATAAATGCCTTCGGGTCTTAACCCGGATAAAATCACTAGCA
114831685 CAAATGCCTTC-GGTC
65 CAAATGCCTTCGGGTC
*
114831700 TTAACCCGGATAAAATCACTAGCATAAATGCCTTCGGGTCTTAACCCGGATAAAATCACTAGCAC
1 TTAGCCCGGATAAAATCACTAGCATAAATGCCTTCGGGTCTTAACCCGGATAAAATCACTAGCAC
*
114831765 AAATGCCTTCGGGAC
66 AAATGCCTTCGGGTC
114831780 TTAGCCCGGATA
1 TTAGCCCGGATA
114831792 TCATTCAAAT
Statistics
Matches: 147, Mismatches: 19, Indels: 9
0.84 0.11 0.05
Matches are distributed among these distances:
79 75 0.51
80 69 0.47
81 3 0.02
ACGTcount: A:0.29, C:0.28, G:0.20, T:0.24
Consensus pattern (80 bp):
TTAGCCCGGATAAAATCACTAGCATAAATGCCTTCGGGTCTTAACCCGGATAAAATCACTAGCAC
AAATGCCTTCGGGTC
Found at i:114831748 original size:119 final size:120
Alignment explanation
Indices: 114831533--114831791 Score: 328
Period size: 119 Copynumber: 2.2 Consensus size: 120
114831523 ACCCAAGTTT
* * * * * * *
114831533 CTTCGGAATTTAG-CCGGATATAACCACAAGCATAATTGCCTTCGGGTCTTAACCCGGGTATAGC
1 CTTCGGGACTTAGCCCGGATAAAACCACAAGCACAAATGCCTTCGGGTCTTAACCCGGATAAAGC
* * * *
114831597 AACTCGCACAAATGCCTTCGGGTCTTAGCCCGGAT-ATATCAACTCGCACAAATGC
66 AACTAGCACAAATGCCTTCGGGTCTTAACCCGGATAAAATC-ACTAGCACAAATGC
* * * *
114831652 CTTCGGGTCTTAGCCCGGATAAAATCACTAGCACAAATGCCTTC-GGTCTTAACCCGGATAAAAT
1 CTTCGGGACTTAGCCCGGATAAAACCACAAGCACAAATGCCTTCGGGTCTTAACCCGGAT-AAAG
*
114831716 C-ACTAGCATAAATGCCTTCGGGTCTTAACCCGGATAAAATCACTAGCACAAATGC
65 CAACTAGCACAAATGCCTTCGGGTCTTAACCCGGATAAAATCACTAGCACAAATGC
114831771 CTTCGGGACTTAGCCCGGATA
1 CTTCGGGACTTAGCCCGGATA
114831792 TCATTCAAAT
Statistics
Matches: 120, Mismatches: 17, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
119 88 0.73
120 32 0.27
ACGTcount: A:0.29, C:0.27, G:0.20, T:0.24
Consensus pattern (120 bp):
CTTCGGGACTTAGCCCGGATAAAACCACAAGCACAAATGCCTTCGGGTCTTAACCCGGATAAAGC
AACTAGCACAAATGCCTTCGGGTCTTAACCCGGATAAAATCACTAGCACAAATGC
Found at i:114837001 original size:33 final size:33
Alignment explanation
Indices: 114836959--114837026 Score: 127
Period size: 33 Copynumber: 2.1 Consensus size: 33
114836949 GAAGGTAGTT
*
114836959 TTCTCCATATCCTCAGGGGCCATCTTGATCTGA
1 TTCTCCATATCCTCAAGGGCCATCTTGATCTGA
114836992 TTCTCCATATCCTCAAGGGCCATCTTGATCTGA
1 TTCTCCATATCCTCAAGGGCCATCTTGATCTGA
114837025 TT
1 TT
114837027 ATACCCCGAG
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 34 1.00
ACGTcount: A:0.19, C:0.29, G:0.16, T:0.35
Consensus pattern (33 bp):
TTCTCCATATCCTCAAGGGCCATCTTGATCTGA
Found at i:114841678 original size:16 final size:15
Alignment explanation
Indices: 114841657--114841704 Score: 69
Period size: 16 Copynumber: 3.1 Consensus size: 15
114841647 GATGTGAATA
114841657 ATAAAATATATAAAAT
1 ATAAAATAT-TAAAAT
114841673 ATAAAATATTAAAAT
1 ATAAAATATTAAAAT
*
114841688 ATCAAAATATTAGAAT
1 AT-AAAATATTAAAAT
114841704 A
1 A
114841705 ATAATAATTA
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
15 8 0.27
16 22 0.73
ACGTcount: A:0.65, C:0.02, G:0.02, T:0.31
Consensus pattern (15 bp):
ATAAAATATTAAAAT
Found at i:114841687 original size:8 final size:8
Alignment explanation
Indices: 114841653--114841704 Score: 61
Period size: 8 Copynumber: 6.5 Consensus size: 8
114841643 CAATGATGTG
*
114841653 AATAATAA
1 AATATTAA
114841661 AATATATAA
1 AATAT-TAA
114841670 AATA-TAA
1 AATATTAA
114841677 AATATTAA
1 AATATTAA
*
114841685 AATATCAA
1 AATATTAA
*
114841693 AATATTAG
1 AATATTAA
114841701 AATA
1 AATA
114841705 ATAATAATTA
Statistics
Matches: 38, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
7 7 0.18
8 24 0.63
9 7 0.18
ACGTcount: A:0.65, C:0.02, G:0.02, T:0.31
Consensus pattern (8 bp):
AATATTAA
Done.