Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A06
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 115140250
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2234201 characters in sequence are not A, C, G, or T
File 345 of 345
Found at i:114841704 original size:24 final size:24
Alignment explanation
Indices: 114841652--114841708 Score: 71
Period size: 24 Copynumber: 2.4 Consensus size: 24
114841642 ACAATGATGT
*
114841652 GAATAATAAAATATATAAAATATA
1 GAATAATAAAATATACAAAATATA
* *
114841676 AAATATTAAAATAT-CAAAATATTA
1 GAATAATAAAATATACAAAATA-TA
114841700 GAATAATAA
1 GAATAATAA
114841709 TAATTAATAT
Statistics
Matches: 27, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
23 6 0.22
24 21 0.78
ACGTcount: A:0.65, C:0.02, G:0.04, T:0.30
Consensus pattern (24 bp):
GAATAATAAAATATACAAAATATA
Found at i:114841726 original size:22 final size:21
Alignment explanation
Indices: 114841693--114841733 Score: 55
Period size: 22 Copynumber: 1.9 Consensus size: 21
114841683 AAAATATCAA
* *
114841693 AATATTAGAATAATAATAATT
1 AATATTAAAATAAAAATAATT
114841714 AATATTGAAAATAAAAATAA
1 AATATT-AAAATAAAAATAA
114841734 AATAGAAATA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 6 0.35
22 11 0.65
ACGTcount: A:0.63, C:0.00, G:0.05, T:0.32
Consensus pattern (21 bp):
AATATTAAAATAAAAATAATT
Found at i:114841880 original size:25 final size:25
Alignment explanation
Indices: 114841852--114841916 Score: 91
Period size: 25 Copynumber: 2.7 Consensus size: 25
114841842 CGTGATAATA
*
114841852 TTAAAAATATGTACATAATATAGTG
1 TTAAAAATATATACATAATATAGTG
114841877 TTAAAAATATATACATAATATA--G
1 TTAAAAATATATACATAATATAGTG
*
114841900 TT-AAGATATATACATAA
1 TTAAAAATATATACATAA
114841917 GATAACATGT
Statistics
Matches: 38, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
22 14 0.37
23 3 0.08
25 21 0.55
ACGTcount: A:0.52, C:0.05, G:0.08, T:0.35
Consensus pattern (25 bp):
TTAAAAATATATACATAATATAGTG
Found at i:114841951 original size:14 final size:13
Alignment explanation
Indices: 114841930--114841994 Score: 57
Period size: 14 Copynumber: 5.1 Consensus size: 13
114841920 AACATGTAGA
114841930 AAAATATATATAT
1 AAAATATATATAT
114841943 AATAATATA-ATATT
1 AA-AATATATATA-T
*
114841957 AAAGATATATAAAT
1 AAA-ATATATATAT
*
114841971 -AAA-ATA-GTAT
1 AAAATATATATAT
114841981 AAAATATATATAT
1 AAAATATATATAT
114841994 A
1 A
114841995 CGTAATATAG
Statistics
Matches: 41, Mismatches: 4, Indels: 14
0.69 0.07 0.24
Matches are distributed among these distances:
10 2 0.05
11 6 0.15
12 4 0.10
13 12 0.29
14 15 0.37
15 2 0.05
ACGTcount: A:0.62, C:0.00, G:0.03, T:0.35
Consensus pattern (13 bp):
AAAATATATATAT
Found at i:114842067 original size:23 final size:25
Alignment explanation
Indices: 114841937--114842069 Score: 72
Period size: 22 Copynumber: 5.5 Consensus size: 25
114841927 AGAAAAATAT
114841937 ATATATAATAATATAATATT-AAAG-
1 ATATAT-ATAATATAATATTAAAAGA
* *
114841961 ATATATA-AATAAAATAGTATAAAATA
1 ATATATATAATATAATA-T-TAAAAGA
*
114841987 TATATATACGTAATATAGA-ATT-TAA-A
1 -ATATATA--TAATATA-ATATTAAAAGA
**
114842013 ATATACCT-A-AT-ATATTAAAAGA
1 ATATATATAATATAATATTAAAAGA
*
114842035 ATATATATAATATAATATTAAGA-A
1 ATATATATAATATAATATTAAAAGA
114842059 ATATA-ATAATA
1 ATATATATAATA
114842070 ACAAAAAAAG
Statistics
Matches: 84, Mismatches: 10, Indels: 31
0.67 0.08 0.25
Matches are distributed among these distances:
19 1 0.01
20 3 0.04
21 4 0.05
22 16 0.19
23 10 0.12
24 15 0.18
25 16 0.19
26 1 0.01
27 9 0.11
28 1 0.01
29 1 0.01
30 6 0.07
31 1 0.01
ACGTcount: A:0.58, C:0.02, G:0.05, T:0.35
Consensus pattern (25 bp):
ATATATATAATATAATATTAAAAGA
Found at i:114842069 original size:45 final size:48
Alignment explanation
Indices: 114841930--114842069 Score: 128
Period size: 45 Copynumber: 2.9 Consensus size: 48
114841920 AACATGTAGA
* * *
114841930 AAAATATATATATAATAATATAATATTAAAGATATATAAATAAAATAGTAT
1 AAAAGATATATAT-ATAATATAATATT-AAGAAATAT-AATAATATAGTAT
* * *
114841981 AAAATATATATATACGTAATATAGA-ATTTA-AAATATACCTAATATA-T-T
1 AAAAGATATATATA--TAATATA-ATATTAAGAAATATA-ATAATATAGTAT
114842029 AAAAGA-ATATATATAATATAATATTAAGAAATATAATAATA
1 AAAAGATATATATATAATATAATATTAAGAAATATAATAATA
114842070 ACAAAAAAAG
Statistics
Matches: 76, Mismatches: 7, Indels: 18
0.75 0.07 0.18
Matches are distributed among these distances:
44 1 0.01
45 16 0.21
46 7 0.09
47 7 0.09
48 6 0.08
49 2 0.03
50 12 0.16
51 14 0.18
52 10 0.13
53 1 0.01
ACGTcount: A:0.59, C:0.02, G:0.04, T:0.35
Consensus pattern (48 bp):
AAAAGATATATATATAATATAATATTAAGAAATATAATAATATAGTAT
Found at i:114842385 original size:17 final size:17
Alignment explanation
Indices: 114842333--114842381 Score: 91
Period size: 17 Copynumber: 2.9 Consensus size: 17
114842323 CTTTGATTAA
114842333 TCTCCAAAAAACTAGCT
1 TCTCCAAAAAACTAGCT
114842350 TCTCCAAAAAACTAGCT
1 TCTCCAAAAAACTAGCT
114842367 TCTCC-AAAAACTAGC
1 TCTCCAAAAAACTAGC
114842382 CTTCACAATA
Statistics
Matches: 32, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
16 10 0.31
17 22 0.69
ACGTcount: A:0.41, C:0.31, G:0.06, T:0.22
Consensus pattern (17 bp):
TCTCCAAAAAACTAGCT
Found at i:114842606 original size:30 final size:30
Alignment explanation
Indices: 114842570--114842653 Score: 98
Period size: 30 Copynumber: 2.8 Consensus size: 30
114842560 CAAGTGGTGG
*
114842570 TGGAGCAAGTGTGGTTAGTAGAGTAGGTAA
1 TGGAGCAAGTGTGGCTAGTAGAGTAGGTAA
* * *
114842600 TGGAGCAAGTGTGGCTAGTGGAGTTGGTAG
1 TGGAGCAAGTGTGGCTAGTAGAGTAGGTAA
* *
114842630 TGGA-AAAGGTGTGGCTAGTGGAGT
1 TGGAGCAA-GTGTGGCTAGTAGAGT
114842654 TGGTGGTGGA
Statistics
Matches: 48, Mismatches: 5, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
29 2 0.04
30 46 0.96
ACGTcount: A:0.25, C:0.05, G:0.44, T:0.26
Consensus pattern (30 bp):
TGGAGCAAGTGTGGCTAGTAGAGTAGGTAA
Found at i:114842650 original size:18 final size:18
Alignment explanation
Indices: 114842627--114842678 Score: 53
Period size: 18 Copynumber: 3.2 Consensus size: 18
114842617 GTGGAGTTGG
114842627 TAGTGGAAAAGGTGTGGC
1 TAGTGGAAAAGGTGTGGC
114842645 TAGTGG---A-GT-TGG-
1 TAGTGGAAAAGGTGTGGC
*
114842657 TGGTGGAAAAGGTGTGGC
1 TAGTGGAAAAGGTGTGGC
114842675 TAGT
1 TAGT
114842679 TGAGAAAAGT
Statistics
Matches: 26, Mismatches: 2, Indels: 12
0.65 0.05 0.30
Matches are distributed among these distances:
12 5 0.19
13 3 0.12
14 2 0.08
15 2 0.08
16 2 0.08
17 3 0.12
18 9 0.35
ACGTcount: A:0.23, C:0.04, G:0.46, T:0.27
Consensus pattern (18 bp):
TAGTGGAAAAGGTGTGGC
Found at i:114842654 original size:30 final size:30
Alignment explanation
Indices: 114842608--114842678 Score: 133
Period size: 30 Copynumber: 2.4 Consensus size: 30
114842598 AATGGAGCAA
114842608 GTGTGGCTAGTGGAGTTGGTAGTGGAAAAG
1 GTGTGGCTAGTGGAGTTGGTAGTGGAAAAG
*
114842638 GTGTGGCTAGTGGAGTTGGTGGTGGAAAAG
1 GTGTGGCTAGTGGAGTTGGTAGTGGAAAAG
114842668 GTGTGGCTAGT
1 GTGTGGCTAGT
114842679 TGAGAAAAGT
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
30 40 1.00
ACGTcount: A:0.20, C:0.04, G:0.48, T:0.28
Consensus pattern (30 bp):
GTGTGGCTAGTGGAGTTGGTAGTGGAAAAG
Found at i:114844185 original size:69 final size:68
Alignment explanation
Indices: 114844099--114844310 Score: 185
Period size: 69 Copynumber: 3.0 Consensus size: 68
114844089 GTTACTTCGG
* *
114844099 TTTTGCTGATA-ACATGAATAATATTATTACCAAGTATTCAATACTCATACCCGAGTCTGAATAA
1 TTTTGCTGATAGA-ATGAATAACATTATTACC-TGTATTCAATACTCATACCCGAGTCTGAATAA
114844163 GATGA
64 GATGA
* ** * *
114844168 TTTTGCTGATAGAATGAATAAGATGCTCGTACCTGTATTCAATACTCGTA-CTGAGTCTGAATAT
1 TTTTGCTGATAGAATGAATAACAT--TATTACCTGTATTCAATACTCATACCCGAGTCTGAATA-
*
114844232 GATACTTGA
63 -AGA--TGA
* * * * *
114844241 TTTTGCTGATAGCATGAATAAGACACTCATATATCTGTATTCAATACTCATACCCGAGTCCGAGT
1 TTTTGCTGATAGAATGAAT-A-ACA-TTAT-TACCTGTATTCAATACTCATACCCGAGTCTGAAT
114844306 AAGAT
62 AAGAT
114844311 ACTCGATTTT
Statistics
Matches: 113, Mismatches: 18, Indels: 21
0.74 0.12 0.14
Matches are distributed among these distances:
69 33 0.29
70 16 0.14
71 7 0.06
72 1 0.01
73 21 0.19
74 3 0.03
75 21 0.19
76 11 0.10
ACGTcount: A:0.33, C:0.17, G:0.16, T:0.33
Consensus pattern (68 bp):
TTTTGCTGATAGAATGAATAACATTATTACCTGTATTCAATACTCATACCCGAGTCTGAATAAGA
TGA
Found at i:114844325 original size:76 final size:73
Alignment explanation
Indices: 114844132--114844334 Score: 243
Period size: 76 Copynumber: 2.8 Consensus size: 73
114844122 TTATTACCAA
* **
114844132 GTATTCAATACTCATACCCGAGTCTGAATAAG--A-TGATTTTGCTGATAGAATGAATAAGATGC
1 GTATTCAATACTCATACCCGAGTCTGAATAAGATACTGATTTTGCTGATAGCATGAATAAGACAC
*
114844194 TCGTACCT
66 TCATACCT
* * *
114844202 GTATTCAATACTCGTA-CTGAGTCTGAATATGATACTTGATTTTGCTGATAGCATGAATAAGACA
1 GTATTCAATACTCATACCCGAGTCTGAATAAGATAC-TGATTTTGCTGATAGCATGAATAAGACA
*
114844266 CTCATATATCT
65 CTC--ATACCT
* * *
114844277 GTATTCAATACTCATACCCGAGTCCGAGTAAGATACTCGATTTTGCTGAGAGCATGAA
1 GTATTCAATACTCATACCCGAGTCTGAATAAGATACT-GATTTTGCTGATAGCATGAA
114844335 CGTTATTAGT
Statistics
Matches: 111, Mismatches: 14, Indels: 10
0.82 0.10 0.07
Matches are distributed among these distances:
69 13 0.12
70 15 0.14
71 1 0.01
73 28 0.25
75 20 0.18
76 34 0.31
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Consensus pattern (73 bp):
GTATTCAATACTCATACCCGAGTCTGAATAAGATACTGATTTTGCTGATAGCATGAATAAGACAC
TCATACCT
Found at i:114853118 original size:2 final size:2
Alignment explanation
Indices: 114853106--114853135 Score: 51
Period size: 2 Copynumber: 15.0 Consensus size: 2
114853096 CAAATAAAAG
*
114853106 CA CA CA AA CA CA CA CA CA CA CA CA CA CA CA
1 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA
114853136 ATTATACCTG
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.53, C:0.47, G:0.00, T:0.00
Consensus pattern (2 bp):
CA
Found at i:114857395 original size:31 final size:31
Alignment explanation
Indices: 114857357--114857434 Score: 111
Period size: 31 Copynumber: 2.5 Consensus size: 31
114857347 ATCCCTAAGC
114857357 TTCATTTAATTTACTGAAATATTAAAAAGTT
1 TTCATTTAATTTACTGAAATATTAAAAAGTT
* **
114857388 TTCATTTAATTTACTGAACTATTTGAAAGTT
1 TTCATTTAATTTACTGAAATATTAAAAAGTT
* *
114857419 TTTATTTAAGTTACTG
1 TTCATTTAATTTACTG
114857435 TTAATTTTTA
Statistics
Matches: 42, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
31 42 1.00
ACGTcount: A:0.35, C:0.08, G:0.09, T:0.49
Consensus pattern (31 bp):
TTCATTTAATTTACTGAAATATTAAAAAGTT
Found at i:114871001 original size:14 final size:14
Alignment explanation
Indices: 114870982--114871012 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
114870972 CTTTAATACA
*
114870982 CTCAAACTTACGTC
1 CTCAAACTTACGCC
114870996 CTCAAACTTACGCC
1 CTCAAACTTACGCC
114871010 CTC
1 CTC
114871013 TCTAATAATA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.26, C:0.42, G:0.06, T:0.26
Consensus pattern (14 bp):
CTCAAACTTACGCC
Found at i:114894958 original size:97 final size:96
Alignment explanation
Indices: 114894811--114895498 Score: 870
Period size: 97 Copynumber: 7.1 Consensus size: 96
114894801 CCATAAAACC
* * * ** *
114894811 AAAAAAAGCAACCAAAACATTTTGAAGATCAATAAAACTCACTAACACGAACCAAGCAATGAAAG
1 AAAAAAA-CAA-CAAAACATTTCGAA-ATCGATATAACTTGCTAACACGAACCAAGCAATGAAAA
* *
114894876 CTCGAATGTAGGAAGATGGAACCGTAATTCCAAT
63 CTCGAATGTAGGAAGATGGAACCATAATGCCAAT
*
114894910 AAAAAAACAACAGAAACATTTCGAAATCGATATAACTTGCT-ACAACGAACCAACCAATGAAAAC
1 AAAAAAACAACA-AAACATTTCGAAATCGATATAACTTGCTAAC-ACGAACCAAGCAATGAAAAC
* * * *
114894974 TTGTATATAGGAAGATGGAACCATAAAGCCAAT
64 TCGAATGTAGGAAGATGGAACCATAATGCCAAT
* * * * *
114895007 -AAAAAGCAACCAAAACATTTTGAAAATCAATATAACTTGCTAACATGAACCAAGCAATGACAAC
1 AAAAAAACAA-CAAAACATTTCG-AAATCGATATAACTTGCTAACACGAACCAAGCAATGAAAAC
* *
114895071 TCAAATGTAGGAAGATGGAACCGTAATGCCAAT
64 TCGAATGTAGGAAGATGGAACCATAATGCCAAT
* *
114895104 -AAAAAACAACCAAAAGATTTCCAAAATCGATATAACTTGCTAACACGAACCAAGCAATGAAAAC
1 AAAAAAACAA-CAAAACATTT-CGAAATCGATATAACTTGCTAACACGAACCAAGCAATGAAAAC
* *
114895168 TTGAATGTAGGAAGATGGAA-CGTAATGCCAAT
64 TCGAATGTAGGAAGATGGAACCATAATGCCAAT
* *
114895200 AAAAAAA-AACAGAAACATTTCGAAATCGATATAACTTGCTACCACAAACCAAGCAATGAAAACT
1 AAAAAAACAACA-AAACATTTCGAAATCGATATAACTTGCTAACACGAACCAAGCAATGAAAACT
114895264 CGAATGTAGGAAGATGGAACCATAATGCCAAT
65 CGAATGTAGGAAGATGGAACCATAATGCCAAT
* * * * *
114895296 AAAAAAACAACCAAAACATTTTGAAATCAATATGACTTGCTAATACGAACCAAGCAATGAAAAGT
1 AAAAAAACAA-CAAAACATTTCGAAATCGATATAACTTGCTAACACGAACCAAGCAATGAAAACT
*
114895361 TGAATGTAGGAAGATGGAACCATAATGCCAAT
65 CGAATGTAGGAAGATGGAACCATAATGCCAAT
* * * *
114895393 AAAAGAAAC-A-GAAACATTTCAAAATTGATATAACTTGCTAACATGAACCAAGCAATGAAAACT
1 AAAA-AAACAACAAAACATTTCGAAATCGATATAACTTGCTAACACGAACCAAGCAATGAAAACT
114895456 CGAATGTAGGAAGATAGG-ACCATAATGCCAAT
65 CGAATGTAGGAAGAT-GGAACCATAATGCCAAT
*
114895488 AAAAGAACAAC
1 AAAAAAACAAC
114895499 TATGACTTGC
Statistics
Matches: 515, Mismatches: 59, Indels: 33
0.85 0.10 0.05
Matches are distributed among these distances:
94 3 0.01
95 138 0.27
96 60 0.12
97 285 0.55
98 22 0.04
99 7 0.01
ACGTcount: A:0.49, C:0.18, G:0.15, T:0.19
Consensus pattern (96 bp):
AAAAAAACAACAAAACATTTCGAAATCGATATAACTTGCTAACACGAACCAAGCAATGAAAACTC
GAATGTAGGAAGATGGAACCATAATGCCAAT
Found at i:114895281 original size:289 final size:287
Alignment explanation
Indices: 114894710--114895498 Score: 1007
Period size: 289 Copynumber: 2.8 Consensus size: 287
114894700 ACAGACCAAA
* * * ** *
114894710 ATGGAACCATCAAGTCAATAAAAAGCAACCAAAATATTTTGAAAATTGATATAACTCGCTAACAT
1 ATGGAACCATAAAGCCAATAAAAAGCAACCAAAACATTTTGAAAATCAATATAACTTGCTAACAT
* ** *
114894775 G----AAGC----AC-A-CAATG-AGGAAAGATTGAACCATAAAACCAA-AAAAAGCAACCAAAA
66 GAACCAAGCAATGACAATCAATGTAGG-AAGATGGAACCATAATGCCAATAAAAAACAACCAAAA
* * * * ** *
114894828 CATTTTGAAGATCAATAAAACTCACTAACACGAACCAAGCAATGAAAGCTCGAATGTAGGAAGAT
130 CA-TTTCAAAATCGATATAACTTGCTAACACGAACCAAGCAATGAAAACTCGAATGTAGGAAGAT
* *
114894893 GGAACCGTAATTCCAATAAAAAAACAACAGAAACATTTCGAAATCGATATAACTTGCTACAACGA
194 GGAA-CGTAATGCCAATAAAAAAACAACAGAAACATTTCGAAATCGATATAACTTGCTACAACAA
* *
114894958 ACCAACCAATGAAAACTTGTATATAGGAAG
258 ACCAACCAATGAAAACTCGAATATAGGAAG
114894988 ATGGAACCATAAAGCCAATAAAAAGCAACCAAAACATTTTGAAAATCAATATAACTTGCTAACAT
1 ATGGAACCATAAAGCCAATAAAAAGCAACCAAAACATTTTGAAAATCAATATAACTTGCTAACAT
*
114895053 GAACCAAGCAATGACAACTCAAATGTAGGAAGATGGAACCGTAATGCCAATAAAAAACAACCAAA
66 GAACCAAGCAATGACAA-TC-AATGTAGGAAGATGGAACCATAATGCCAATAAAAAACAACCAAA
* *
114895118 AGATTTCCAAAATCGATATAACTTGCTAACACGAACCAAGCAATGAAAACTTGAATGTAGGAAGA
129 ACATTT-CAAAATCGATATAACTTGCTAACACGAACCAAGCAATGAAAACTCGAATGTAGGAAGA
*
114895183 TGGAACGTAATGCCAATAAAAAAA-AACAGAAACATTTCGAAATCGATATAACTTGCTACCACAA
193 TGGAACGTAATGCCAATAAAAAAACAACAGAAACATTTCGAAATCGATATAACTTGCTACAACAA
* *
114895247 ACCAAGCAATGAAAACTCGAATGTAGGAAG
258 ACCAACCAATGAAAACTCGAATATAGGAAG
* * * *
114895277 ATGGAACCATAATGCCAATAAAAAAACAACCAAAACATTTTG-AAATCAATATGACTTGCTAATA
1 ATGGAACCATAAAGCCAAT-AAAAAGCAACCAAAACATTTTGAAAATCAATATAACTTGCTAACA
* * * *
114895341 CGAACCAAGCAATGAAAAGTTGAATGTAGGAAGATGGAACCATAATGCCAATAAAAGA-AA-CAG
65 TGAACCAAGCAATGACAA--TCAATGTAGGAAGATGGAACCATAATGCCAATAAAAAACAACCA-
* *
114895404 AAACATTTCAAAATTGATATAACTTGCTAACATGAACCAAGCAATGAAAACTCGAATGTAGGAAG
127 AAACATTTCAAAATCGATATAACTTGCTAACACGAACCAAGCAATGAAAACTCGAATGTAGGAAG
* * *
114895469 ATAGGACCATAATGCCAATAAAAGAACAAC
192 AT-GGAACGTAATGCCAATAAAAAAACAAC
114895499 TATGACTTGC
Statistics
Matches: 447, Mismatches: 44, Indels: 29
0.86 0.08 0.06
Matches are distributed among these distances:
278 60 0.13
282 4 0.01
286 2 0.00
287 59 0.13
288 29 0.06
289 156 0.35
290 64 0.14
291 73 0.16
ACGTcount: A:0.49, C:0.18, G:0.15, T:0.19
Consensus pattern (287 bp):
ATGGAACCATAAAGCCAATAAAAAGCAACCAAAACATTTTGAAAATCAATATAACTTGCTAACAT
GAACCAAGCAATGACAATCAATGTAGGAAGATGGAACCATAATGCCAATAAAAAACAACCAAAAC
ATTTCAAAATCGATATAACTTGCTAACACGAACCAAGCAATGAAAACTCGAATGTAGGAAGATGG
AACGTAATGCCAATAAAAAAACAACAGAAACATTTCGAAATCGATATAACTTGCTACAACAAACC
AACCAATGAAAACTCGAATATAGGAAG
Found at i:114895336 original size:192 final size:193
Alignment explanation
Indices: 114894825--114895498 Score: 921
Period size: 192 Copynumber: 3.5 Consensus size: 193
114894815 AAAGCAACCA
* * * ** * *
114894825 AAACATTTTGAAGATCAATAAAACTCACTAACACGAACCAAGCAATGAAAGCTCGAATGTAGGAA
1 AAACATTTCGAA-ATCGATATAACTTGCTAACATGAACCAAGCAATGAAAACTCGAATGTAGGAA
* *
114894890 GATGGAACCGTAATTCCAATAAAAAAACAA-CAGAAACATTTCGAAATCGATATAACTTGCT-AC
65 GATGGAACCATAATGCCAATAAAAAAACAACCA-AAACATTTCGAAATCGATATAACTTGCTAAC
* * * * * *
114894953 AACGAACCAACCAATGAAAACTTGTATATAGGAAGATGGAACCATAAAGCCAATAAAAAGCAACC
129 -ACGAACCAAGCAATGAAAACTTGAATGTAGGAAGATGGAACCATAATGCCAATAAAAA-AAAAC
114895018 A-
192 AG
* * * *
114895019 AAACATTTTGAAAATCAATATAACTTGCTAACATGAACCAAGCAATGACAACTCAAATGTAGGAA
1 AAACATTTCG-AAATCGATATAACTTGCTAACATGAACCAAGCAATGAAAACTCGAATGTAGGAA
* * *
114895084 GATGGAACCGTAATGCCAAT-AAAAAACAACCAAAAGATTTCCAAAATCGATATAACTTGCTAAC
65 GATGGAACCATAATGCCAATAAAAAAACAACCAAAACATTT-CGAAATCGATATAACTTGCTAAC
*
114895148 ACGAACCAAGCAATGAAAACTTGAATGTAGGAAGATGGAA-CGTAATGCCAATAAAAAAAAACAG
129 ACGAACCAAGCAATGAAAACTTGAATGTAGGAAGATGGAACCATAATGCCAATAAAAAAAAACAG
* **
114895212 AAACATTTCGAAATCGATATAACTTGCTACCACAAACCAAGCAATGAAAACTCGAATGTAGGAAG
1 AAACATTTCGAAATCGATATAACTTGCTAACATGAACCAAGCAATGAAAACTCGAATGTAGGAAG
* * * *
114895277 ATGGAACCATAATGCCAATAAAAAAACAACCAAAACATTTTGAAATCAATATGACTTGCTAATAC
66 ATGGAACCATAATGCCAATAAAAAAACAACCAAAACATTTCGAAATCGATATAACTTGCTAACAC
* *
114895342 GAACCAAGCAATGAAAAGTTGAATGTAGGAAGATGGAACCATAATGCCAAT-AAAAGAAACAG
131 GAACCAAGCAATGAAAACTTGAATGTAGGAAGATGGAACCATAATGCCAATAAAAAAAAACAG
* *
114895404 AAACATTTCAAAATTGATATAACTTGCTAACATGAACCAAGCAATGAAAACTCGAATGTAGGAAG
1 AAACATTTCGAAATCGATATAACTTGCTAACATGAACCAAGCAATGAAAACTCGAATGTAGGAAG
*
114895469 ATAGG-ACCATAATGCCAATAAAAGAACAAC
66 AT-GGAACCATAATGCCAATAAAAAAACAAC
114895499 TATGACTTGC
Statistics
Matches: 432, Mismatches: 40, Indels: 18
0.88 0.08 0.04
Matches are distributed among these distances:
192 224 0.52
193 72 0.17
194 132 0.31
195 4 0.01
ACGTcount: A:0.48, C:0.18, G:0.15, T:0.19
Consensus pattern (193 bp):
AAACATTTCGAAATCGATATAACTTGCTAACATGAACCAAGCAATGAAAACTCGAATGTAGGAAG
ATGGAACCATAATGCCAATAAAAAAACAACCAAAACATTTCGAAATCGATATAACTTGCTAACAC
GAACCAAGCAATGAAAACTTGAATGTAGGAAGATGGAACCATAATGCCAATAAAAAAAAACAG
Found at i:114906215 original size:61 final size:62
Alignment explanation
Indices: 114906137--114906270 Score: 161
Period size: 61 Copynumber: 2.2 Consensus size: 62
114906127 AAAGCGGCCG
* ** *
114906137 AAGTGAG-ATTTTCATTATAGT-GTAAGGAGCAAAATGA-TAAAAAAAATTAGTAAAAAGG-TCA
1 AAGTGAGAATTTTCATTATAATAAAAAGGA-CAAAATGACCAAAAAAAA-TAGT-AAAAGGATCA
*
114906198 AAGTGAGAATTTT-ATTATAATAAAAAGGACAATATGACCAAAAAAAATAGTAAAAGGATCA
1 AAGTGAGAATTTTCATTATAATAAAAAGGACAAAATGACCAAAAAAAATAGTAAAAGGATCA
114906259 AAGTGAGAATTT
1 AAGTGAGAATTT
114906271 CACTATAGGG
Statistics
Matches: 64, Mismatches: 5, Indels: 8
0.83 0.06 0.10
Matches are distributed among these distances:
60 6 0.09
61 40 0.62
62 18 0.28
ACGTcount: A:0.51, C:0.05, G:0.18, T:0.25
Consensus pattern (62 bp):
AAGTGAGAATTTTCATTATAATAAAAAGGACAAAATGACCAAAAAAAATAGTAAAAGGATCA
Found at i:114915129 original size:29 final size:29
Alignment explanation
Indices: 114915096--114915151 Score: 78
Period size: 29 Copynumber: 1.9 Consensus size: 29
114915086 TTTCATTCTT
* *
114915096 TTTAATAATTTAAG-GACTAATTTGATCCA
1 TTTAATAA-TAAAGAGACTAATTAGATCCA
114915125 TTTAATAATAAAGAGACTAATTAGATC
1 TTTAATAATAAAGAGACTAATTAGATC
114915152 TAGCCCTTGT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
28 4 0.17
29 20 0.83
ACGTcount: A:0.43, C:0.09, G:0.11, T:0.38
Consensus pattern (29 bp):
TTTAATAATAAAGAGACTAATTAGATCCA
Found at i:114917490 original size:50 final size:50
Alignment explanation
Indices: 114917331--114917490 Score: 132
Period size: 50 Copynumber: 3.1 Consensus size: 50
114917321 ATTACAGATC
*
114917331 AAAATCAAACTCATGCTACAATGTAAGAGCTTTGATTCATTATTTACATA
1 AAAATCAAACTCATGCTACAATGTACGAGCTTTGATTCATTATTTACATA
* * * * * * *
114917381 AAAATCTTGAAACTTCTAAGTTA-AATACT-CGAG-TTT-ATGCGA-AAATTACAGATC
1 AAAATC---AAAC-TC-ATGCTACAAT-GTACGAGCTTTGATTC-ATTATTTAC--ATA
114917435 AAAATCAAACTCATGCTACAATGTACGAGCTTTGATTCATTATTTACATA
1 AAAATCAAACTCATGCTACAATGTACGAGCTTTGATTCATTATTTACATA
114917485 AAAATC
1 AAAATC
114917491 TTGAAACCTC
Statistics
Matches: 81, Mismatches: 15, Indels: 28
0.65 0.12 0.23
Matches are distributed among these distances:
49 5 0.06
50 23 0.28
51 8 0.10
52 16 0.20
53 8 0.10
54 16 0.20
55 5 0.06
ACGTcount: A:0.41, C:0.16, G:0.11, T:0.33
Consensus pattern (50 bp):
AAAATCAAACTCATGCTACAATGTACGAGCTTTGATTCATTATTTACATA
Found at i:114917684 original size:103 final size:104
Alignment explanation
Indices: 114917287--114917698 Score: 623
Period size: 104 Copynumber: 4.0 Consensus size: 104
114917277 ATCAGGCACC
* * *
114917287 AACCACTAAGTTAAATACTCGAGTTTATGCGAAAATTACAGATCAAAATCAAACTCATGCTACAA
1 AACCTCTAAGTTAAATACTCAAGTTTATGCGAAAATGACAGATCAAAATCAAACTCATGCTACAA
114917352 TGTAAGAGCTTTGATTCATTATTTACATAAAAATCTTGA
66 TGTAAGAGCTTTGATTCATTATTTACATAAAAATCTTGA
* * *
114917391 AACTTCTAAGTTAAATACTCGAGTTTATGCGAAAATTACAGATCAAAATCAAACTCATGCTACAA
1 AACCTCTAAGTTAAATACTCAAGTTTATGCGAAAATGACAGATCAAAATCAAACTCATGCTACAA
*
114917456 TGTACGAGCTTTGATTCATTATTTACATAAAAATCTTGA
66 TGTAAGAGCTTTGATTCATTATTTACATAAAAATCTTGA
* * * *
114917495 AACCTCTAAGTTAAATACTCAAGTTTAAGCGAAAATGA-TGAAGCAAAATCAAACTCATTCTACA
1 AACCTCTAAGTTAAATACTCAAGTTTATGCGAAAATGACAG-ATCAAAATCAAACTCATGCTACA
* *
114917559 ATGTAAGAGCTTTGATTCATTATTTACATGAAAATCTTTA
65 ATGTAAGAGCTTTGATTCATTATTTACATAAAAATCTTGA
* * * *
114917599 AACCTCTAACTTAAATACTCAAGTTTA-GCGAAAATGA-TGAATCAAAATCAAACTCATTCAACA
1 AACCTCTAAGTTAAATACTCAAGTTTATGCGAAAATGACAG-ATCAAAATCAAACTCATGCTACA
*
114917662 ATGTAAGAGCTTTGATTCATTATTTACATGAAAATCT
65 ATGTAAGAGCTTTGATTCATTATTTACATAAAAATCT
114917699 GGAATATGTT
Statistics
Matches: 291, Mismatches: 16, Indels: 3
0.94 0.05 0.01
Matches are distributed among these distances:
103 72 0.25
104 219 0.75
ACGTcount: A:0.41, C:0.16, G:0.11, T:0.32
Consensus pattern (104 bp):
AACCTCTAAGTTAAATACTCAAGTTTATGCGAAAATGACAGATCAAAATCAAACTCATGCTACAA
TGTAAGAGCTTTGATTCATTATTTACATAAAAATCTTGA
Found at i:114919012 original size:58 final size:60
Alignment explanation
Indices: 114918914--114919035 Score: 151
Period size: 58 Copynumber: 2.1 Consensus size: 60
114918904 TTTTAAGACC
* * *
114918914 TGAACTTAATAATTTTTCTCATATTTGGGTTTAAA-TTTTTTT-TATCCAAGTTAGGCCT
1 TGAACTTAACAATTATTCTCATATTTGGGCTTAAACTTTTTTTGTATCCAAGTTAGGCCT
* * * *
114918972 TGAACTTAACAATTATTCTCGTA-TTGGGACTTGAACTTTTTTTGTGTCCAAGTTAGTCCT
1 TGAACTTAACAATTATTCTCATATTTGGG-CTTAAACTTTTTTTGTATCCAAGTTAGGCCT
114919032 TGAA
1 TGAA
114919036 AACTTAGAAT
Statistics
Matches: 54, Mismatches: 7, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
57 5 0.09
58 24 0.44
59 7 0.13
60 18 0.33
ACGTcount: A:0.25, C:0.14, G:0.15, T:0.46
Consensus pattern (60 bp):
TGAACTTAACAATTATTCTCATATTTGGGCTTAAACTTTTTTTGTATCCAAGTTAGGCCT
Found at i:114924043 original size:39 final size:39
Alignment explanation
Indices: 114923997--114924136 Score: 262
Period size: 39 Copynumber: 3.6 Consensus size: 39
114923987 GCTCTGATGA
114923997 GCTTCAGTTAGCCTTCGGGCTTCCGTTTAGCACTTATGT
1 GCTTCAGTTAGCCTTCGGGCTTCCGTTTAGCACTTATGT
*
114924036 GCTTCAGTTAGCCTTCAGGCTTCCGTTTAGCACTTATGT
1 GCTTCAGTTAGCCTTCGGGCTTCCGTTTAGCACTTATGT
114924075 GCTTCAGTTAGCCTTCGGGCTTCCGTTTAGCACTTATGT
1 GCTTCAGTTAGCCTTCGGGCTTCCGTTTAGCACTTATGT
*
114924114 GCTTCAGTTAGACTTCGGGCTTC
1 GCTTCAGTTAGCCTTCGGGCTTC
114924137 AGATCGCGAT
Statistics
Matches: 98, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
39 98 1.00
ACGTcount: A:0.14, C:0.26, G:0.23, T:0.38
Consensus pattern (39 bp):
GCTTCAGTTAGCCTTCGGGCTTCCGTTTAGCACTTATGT
Found at i:114926715 original size:12 final size:12
Alignment explanation
Indices: 114926700--114926734 Score: 61
Period size: 12 Copynumber: 2.9 Consensus size: 12
114926690 CATGGCAATA
*
114926700 TATATATGTATG
1 TATATATATATG
114926712 TATATATATATG
1 TATATATATATG
114926724 TATATATATAT
1 TATATATATAT
114926735 TGTTACATAT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
12 22 1.00
ACGTcount: A:0.40, C:0.00, G:0.09, T:0.51
Consensus pattern (12 bp):
TATATATATATG
Found at i:114928523 original size:12 final size:12
Alignment explanation
Indices: 114928508--114928532 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
114928498 TTATCCTCTT
114928508 ATTTATAGGTTG
1 ATTTATAGGTTG
114928520 ATTTATAGGTTG
1 ATTTATAGGTTG
114928532 A
1 A
114928533 GAGGAACTAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.28, C:0.00, G:0.24, T:0.48
Consensus pattern (12 bp):
ATTTATAGGTTG
Found at i:114932998 original size:16 final size:18
Alignment explanation
Indices: 114932962--114932997 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
114932952 AGCAACATGC
*
114932962 TTCATTTTTATGTATTTT
1 TTCATTTATATGTATTTT
114932980 TTCATTTATAT-TATTTT
1 TTCATTTATATGTATTTT
114932997 T
1 T
114932998 CCAGTGTAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 7 0.41
18 10 0.59
ACGTcount: A:0.19, C:0.06, G:0.03, T:0.72
Consensus pattern (18 bp):
TTCATTTATATGTATTTT
Found at i:114936479 original size:22 final size:22
Alignment explanation
Indices: 114936449--114936500 Score: 86
Period size: 22 Copynumber: 2.4 Consensus size: 22
114936439 ATGACTACAG
* *
114936449 ACACATGGACTATACGTTATCT
1 ACACGTGGACTATACGCTATCT
114936471 ACACGTGGACTATACGCTATCT
1 ACACGTGGACTATACGCTATCT
114936493 ACACGTGG
1 ACACGTGG
114936501 CCCAATATGC
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
22 28 1.00
ACGTcount: A:0.29, C:0.25, G:0.19, T:0.27
Consensus pattern (22 bp):
ACACGTGGACTATACGCTATCT
Found at i:114940967 original size:16 final size:16
Alignment explanation
Indices: 114940946--114940980 Score: 70
Period size: 16 Copynumber: 2.2 Consensus size: 16
114940936 GGGAATGCTT
114940946 ACAGGCTTAGAATAGA
1 ACAGGCTTAGAATAGA
114940962 ACAGGCTTAGAATAGA
1 ACAGGCTTAGAATAGA
114940978 ACA
1 ACA
114940981 CATTATAGTT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.46, C:0.14, G:0.23, T:0.17
Consensus pattern (16 bp):
ACAGGCTTAGAATAGA
Found at i:114943795 original size:22 final size:23
Alignment explanation
Indices: 114943770--114943826 Score: 71
Period size: 22 Copynumber: 2.5 Consensus size: 23
114943760 TTTTCACAAA
114943770 TTTAGAATTTAATCCTTTTATTT
1 TTTAGAATTTAATCCTTTTATTT
* **
114943793 TTAAGAATTT-ATTTTTTTATTT
1 TTTAGAATTTAATCCTTTTATTT
*
114943815 TTTAGATTTTAA
1 TTTAGAATTTAA
114943827 AATTTAGGTT
Statistics
Matches: 28, Mismatches: 5, Indels: 2
0.80 0.14 0.06
Matches are distributed among these distances:
22 18 0.64
23 10 0.36
ACGTcount: A:0.28, C:0.04, G:0.05, T:0.63
Consensus pattern (23 bp):
TTTAGAATTTAATCCTTTTATTT
Found at i:114944912 original size:22 final size:23
Alignment explanation
Indices: 114944887--114944929 Score: 54
Period size: 22 Copynumber: 1.9 Consensus size: 23
114944877 ACGTAGTGAC
114944887 TTAAATGAAC-ATTTT-TAATTAA
1 TTAAATG-ACTATTTTATAATTAA
*
114944909 TTAAGTGACTATTTTATAATT
1 TTAAATGACTATTTTATAATT
114944930 TTTAAAGTTA
Statistics
Matches: 18, Mismatches: 1, Indels: 3
0.82 0.05 0.14
Matches are distributed among these distances:
21 2 0.11
22 11 0.61
23 5 0.28
ACGTcount: A:0.40, C:0.05, G:0.07, T:0.49
Consensus pattern (23 bp):
TTAAATGACTATTTTATAATTAA
Found at i:114947361 original size:12 final size:12
Alignment explanation
Indices: 114947346--114947387 Score: 50
Period size: 12 Copynumber: 3.5 Consensus size: 12
114947336 TAAGGTATGT
114947346 TTTATTCCATTA
1 TTTATTCCATTA
**
114947358 TTTATTTAATGT-
1 TTTATTCCAT-TA
114947370 TTTATTCCATTA
1 TTTATTCCATTA
114947382 TTTATT
1 TTTATT
114947388 TAATGTCAAG
Statistics
Matches: 24, Mismatches: 4, Indels: 4
0.75 0.12 0.12
Matches are distributed among these distances:
11 1 0.04
12 22 0.92
13 1 0.04
ACGTcount: A:0.24, C:0.10, G:0.02, T:0.64
Consensus pattern (12 bp):
TTTATTCCATTA
Found at i:114947369 original size:24 final size:24
Alignment explanation
Indices: 114947342--114947393 Score: 104
Period size: 24 Copynumber: 2.2 Consensus size: 24
114947332 GTTGTAAGGT
114947342 ATGTTTTATTCCATTATTTATTTA
1 ATGTTTTATTCCATTATTTATTTA
114947366 ATGTTTTATTCCATTATTTATTTA
1 ATGTTTTATTCCATTATTTATTTA
114947390 ATGT
1 ATGT
114947394 CAAGAACCGT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 28 1.00
ACGTcount: A:0.25, C:0.08, G:0.06, T:0.62
Consensus pattern (24 bp):
ATGTTTTATTCCATTATTTATTTA
Found at i:114957120 original size:24 final size:25
Alignment explanation
Indices: 114957093--114957145 Score: 99
Period size: 25 Copynumber: 2.2 Consensus size: 25
114957083 GTTGTAAGGT
114957093 ATGTTTTATTCCA-TTATTTATTTA
1 ATGTTTTATTCCATTTATTTATTTA
114957117 ATGTTTTATTCCATTTATTTATTTA
1 ATGTTTTATTCCATTTATTTATTTA
114957142 ATGT
1 ATGT
114957146 CAAGGAAAGA
Statistics
Matches: 28, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
24 13 0.46
25 15 0.54
ACGTcount: A:0.25, C:0.08, G:0.06, T:0.62
Consensus pattern (25 bp):
ATGTTTTATTCCATTTATTTATTTA
Found at i:114957134 original size:21 final size:22
Alignment explanation
Indices: 114957093--114957137 Score: 65
Period size: 24 Copynumber: 2.0 Consensus size: 22
114957083 GTTGTAAGGT
114957093 ATGTTTTATTCCATTATTTATTTA
1 ATGTTTTATTCC--TATTTATTTA
114957117 ATGTTTTATTCC-ATTTATTTA
1 ATGTTTTATTCCTATTTATTTA
114957138 TTTAATGTCA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
21 9 0.43
24 12 0.57
ACGTcount: A:0.24, C:0.09, G:0.04, T:0.62
Consensus pattern (22 bp):
ATGTTTTATTCCTATTTATTTA
Found at i:114963338 original size:22 final size:22
Alignment explanation
Indices: 114963285--114963331 Score: 76
Period size: 22 Copynumber: 2.1 Consensus size: 22
114963275 TTTGCACAAA
114963285 TTTAGAATTTAATCCTTTTATT
1 TTTAGAATTTAATCCTTTTATT
* *
114963307 TTTAGAATTTGATCTTTTTATT
1 TTTAGAATTTAATCCTTTTATT
114963329 TTT
1 TTT
114963332 CAGATTTCAA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.23, C:0.06, G:0.06, T:0.64
Consensus pattern (22 bp):
TTTAGAATTTAATCCTTTTATT
Found at i:114964127 original size:30 final size:31
Alignment explanation
Indices: 114964057--114964130 Score: 89
Period size: 31 Copynumber: 2.4 Consensus size: 31
114964047 AATATTTTAG
*
114964057 TTTAAATCACTGAATAATTTGAAAGCTTCTA
1 TTTAAGTCACTGAATAATTTGAAAGCTTCTA
* *
114964088 TTTAAGTCACTGAATTATTTGGAATG-TT-TA
1 TTTAAGTCACTGAATAATTT-GAAAGCTTCTA
*
114964118 TTTACGTCACTGA
1 TTTAAGTCACTGA
114964131 GTTGTTAATG
Statistics
Matches: 38, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
30 14 0.37
31 20 0.53
32 4 0.11
ACGTcount: A:0.32, C:0.12, G:0.14, T:0.42
Consensus pattern (31 bp):
TTTAAGTCACTGAATAATTTGAAAGCTTCTA
Found at i:114975837 original size:14 final size:14
Alignment explanation
Indices: 114975818--114975845 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
114975808 TTATGGCTCT
114975818 GTGCTAATCTAGTC
1 GTGCTAATCTAGTC
114975832 GTGCTAATCTAGTC
1 GTGCTAATCTAGTC
114975846 TTACGGCAGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.21, C:0.21, G:0.21, T:0.36
Consensus pattern (14 bp):
GTGCTAATCTAGTC
Found at i:114983144 original size:67 final size:67
Alignment explanation
Indices: 114983036--114983212 Score: 327
Period size: 67 Copynumber: 2.6 Consensus size: 67
114983026 TCGGGAATAT
114983036 GTAGTTGAATGTGTGGAAAAGTGTAGTTTTCCTTAGCTGTTTCCCTTAAGGCAACTTAAAATAGG
1 GTAGTTGAATGTGTGGAAAAGTGTAGTTTTCCTTAGCTGTTTCCCTTAAGGCAACTTAAAATAGG
114983101 TG
66 TG
*
114983103 GTAGTTGAATGTGTGGAAAAGCGTAGTTTTCCTTAGCTGTTTCCCTTAAGGCAACTTAAAATAGG
1 GTAGTTGAATGTGTGGAAAAGTGTAGTTTTCCTTAGCTGTTTCCCTTAAGGCAACTTAAAATAGG
114983168 TG
66 TG
* *
114983170 GTAGTTGAATGTGTGGAAAAGTGTAGTTTCCCTTGGCTGTTTC
1 GTAGTTGAATGTGTGGAAAAGTGTAGTTTTCCTTAGCTGTTTC
114983213 TAGTGTAAAT
Statistics
Matches: 106, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
67 106 1.00
ACGTcount: A:0.25, C:0.12, G:0.27, T:0.36
Consensus pattern (67 bp):
GTAGTTGAATGTGTGGAAAAGTGTAGTTTTCCTTAGCTGTTTCCCTTAAGGCAACTTAAAATAGG
TG
Found at i:114998081 original size:2 final size:2
Alignment explanation
Indices: 114998074--114998104 Score: 53
Period size: 2 Copynumber: 15.5 Consensus size: 2
114998064 AAAAACAGGT
*
114998074 GA GA GA GA GA GA GA GA GA GA GA GA AA GA GA G
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA G
114998105 TACCAATGAA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.48, T:0.00
Consensus pattern (2 bp):
GA
Found at i:115004676 original size:33 final size:33
Alignment explanation
Indices: 115004634--115004720 Score: 131
Period size: 33 Copynumber: 2.6 Consensus size: 33
115004624 GTTAAATTCT
115004634 GCTATTAGTCCTTCTATTTTTGCGAAAGTTGTG
1 GCTATTAGTCCTTCTATTTTTGCGAAAGTTGTG
*
115004667 GCTATTAGTCTTTCTATTTTTGCGAAAGTTGTG
1 GCTATTAGTCCTTCTATTTTTGCGAAAGTTGTG
* *
115004700 GCT-TTAATCCTTATACTTTTT
1 GCTATTAGTCCTTCTA-TTTTT
115004721 AAAATTTGAG
Statistics
Matches: 49, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
32 9 0.18
33 40 0.82
ACGTcount: A:0.18, C:0.15, G:0.17, T:0.49
Consensus pattern (33 bp):
GCTATTAGTCCTTCTATTTTTGCGAAAGTTGTG
Found at i:115013257 original size:29 final size:29
Alignment explanation
Indices: 115013217--115013274 Score: 116
Period size: 29 Copynumber: 2.0 Consensus size: 29
115013207 TTACGCAACT
115013217 AAGAACACTACTTTTAGCTAATGCTATAG
1 AAGAACACTACTTTTAGCTAATGCTATAG
115013246 AAGAACACTACTTTTAGCTAATGCTATAG
1 AAGAACACTACTTTTAGCTAATGCTATAG
115013275 TTTCATCAGC
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.38, C:0.17, G:0.14, T:0.31
Consensus pattern (29 bp):
AAGAACACTACTTTTAGCTAATGCTATAG
Found at i:115013486 original size:31 final size:31
Alignment explanation
Indices: 115013451--115013514 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
115013441 ATACAAAATG
*
115013451 GTCACTGAATTATTCAAAAATTTTCATTTAA
1 GTCACTGAACTATTCAAAAATTTTCATTTAA
* *
115013482 GTCACTGAACTATTCAAAAGTTTTTATTTAA
1 GTCACTGAACTATTCAAAAATTTTCATTTAA
115013513 GT
1 GT
115013515 TACTAGGCTG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.36, C:0.12, G:0.09, T:0.42
Consensus pattern (31 bp):
GTCACTGAACTATTCAAAAATTTTCATTTAA
Found at i:115016638 original size:24 final size:24
Alignment explanation
Indices: 115016609--115016656 Score: 87
Period size: 24 Copynumber: 2.0 Consensus size: 24
115016599 GCGTGTCTTC
*
115016609 CAAGGAAGAGAAAGATAAATCATT
1 CAAGGAAGAGAAAGAGAAATCATT
115016633 CAAGGAAGAGAAAGAGAAATCATT
1 CAAGGAAGAGAAAGAGAAATCATT
115016657 ATCACAAAAA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.54, C:0.08, G:0.23, T:0.15
Consensus pattern (24 bp):
CAAGGAAGAGAAAGAGAAATCATT
Found at i:115027786 original size:21 final size:20
Alignment explanation
Indices: 115027749--115027787 Score: 51
Period size: 21 Copynumber: 1.9 Consensus size: 20
115027739 GATAATTAAG
*
115027749 TTTATTTTGGTATTTTTATT
1 TTTATTTTGGTAATTTTATT
*
115027769 TTTATTTTTGTTAATTTTA
1 TTTA-TTTTGGTAATTTTA
115027788 GTACGATAAT
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 4 0.25
21 12 0.75
ACGTcount: A:0.18, C:0.00, G:0.08, T:0.74
Consensus pattern (20 bp):
TTTATTTTGGTAATTTTATT
Found at i:115034595 original size:50 final size:48
Alignment explanation
Indices: 115034528--115034625 Score: 160
Period size: 50 Copynumber: 2.0 Consensus size: 48
115034518 TTCGTAACTA
*
115034528 TTCTCACATTAGGTTTGAATTTTTTCTTTGTCTAAGGTTTTGAACTTGGC
1 TTCTCACATTAGGTTTGAAATTTTT-TTT-TCTAAGGTTTTGAACTTGGC
*
115034578 TTCTCACATTGGGTTTGAAATTTTTTTTTCTAAGGTTTTGAACTTGGC
1 TTCTCACATTAGGTTTGAAATTTTTTTTTCTAAGGTTTTGAACTTGGC
115034626 AATTGTCAAG
Statistics
Matches: 46, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
48 20 0.43
49 3 0.07
50 23 0.50
ACGTcount: A:0.18, C:0.13, G:0.18, T:0.50
Consensus pattern (48 bp):
TTCTCACATTAGGTTTGAAATTTTTTTTTCTAAGGTTTTGAACTTGGC
Found at i:115039962 original size:16 final size:17
Alignment explanation
Indices: 115039937--115039969 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
115039927 TTCAATGTTT
115039937 TAAAAATT-AAGAATTA
1 TAAAAATTAAAGAATTA
*
115039953 TAAAATTTAAAGAATTA
1 TAAAAATTAAAGAATTA
115039970 ACATCCAATG
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 7 0.47
17 8 0.53
ACGTcount: A:0.61, C:0.00, G:0.06, T:0.33
Consensus pattern (17 bp):
TAAAAATTAAAGAATTA
Found at i:115050239 original size:19 final size:20
Alignment explanation
Indices: 115050204--115050242 Score: 71
Period size: 20 Copynumber: 2.0 Consensus size: 20
115050194 TAATAAAATC
115050204 AAAATTTTTAATAAATTTAT
1 AAAATTTTTAATAAATTTAT
115050224 AAAATTTTTAAT-AATTTAT
1 AAAATTTTTAATAAATTTAT
115050243 TTAATCAAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 7 0.37
20 12 0.63
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (20 bp):
AAAATTTTTAATAAATTTAT
Found at i:115057192 original size:2 final size:2
Alignment explanation
Indices: 115057185--115057211 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
115057175 TAGCCTCCTC
115057185 CT CT CT CT CT CT CT CT CT CT CT CT CT C
1 CT CT CT CT CT CT CT CT CT CT CT CT CT C
115057212 AAGCTCTTAC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.00, C:0.52, G:0.00, T:0.48
Consensus pattern (2 bp):
CT
Found at i:115058432 original size:96 final size:96
Alignment explanation
Indices: 115058268--115058459 Score: 305
Period size: 96 Copynumber: 2.0 Consensus size: 96
115058258 TACACATTTG
* * ** *
115058268 TTTTTATTTAGATGGAACTTGACGTGATGTTCTTAAGTTCAATTGAAGTTGAACTTGCTCCATTA
1 TTTTTATTTAGATGGAACTTGACATAATGTTCTTAAGTTCAAACGAAGTTGAACTTGCGCCATTA
* *
115058333 AGTGTTTTTTG-TTGATCTTATATGGTCAACT
66 AGTG-CTTTTGCTTGATCTTATATAGTCAACT
115058364 TTTTTATTTAGATGGAACTTGACATAATGTTCTTAAGTTCAAACGAAGTTGAACTTGCGCCATTA
1 TTTTTATTTAGATGGAACTTGACATAATGTTCTTAAGTTCAAACGAAGTTGAACTTGCGCCATTA
115058429 AGTGCTTTTGCTTGATCTTATATAGTCAACT
66 AGTGCTTTTGCTTGATCTTATATAGTCAACT
115058460 GAAGTCCATC
Statistics
Matches: 88, Mismatches: 7, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
95 5 0.06
96 83 0.94
ACGTcount: A:0.26, C:0.13, G:0.18, T:0.43
Consensus pattern (96 bp):
TTTTTATTTAGATGGAACTTGACATAATGTTCTTAAGTTCAAACGAAGTTGAACTTGCGCCATTA
AGTGCTTTTGCTTGATCTTATATAGTCAACT
Found at i:115063397 original size:33 final size:33
Alignment explanation
Indices: 115063355--115063421 Score: 134
Period size: 33 Copynumber: 2.0 Consensus size: 33
115063345 TTTGTAAAGA
115063355 TAATGATGCACAGTTTATTAGGATGAGATTTAG
1 TAATGATGCACAGTTTATTAGGATGAGATTTAG
115063388 TAATGATGCACAGTTTATTAGGATGAGATTTAG
1 TAATGATGCACAGTTTATTAGGATGAGATTTAG
115063421 T
1 T
115063422 GGTAAAGAAT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 34 1.00
ACGTcount: A:0.33, C:0.06, G:0.24, T:0.37
Consensus pattern (33 bp):
TAATGATGCACAGTTTATTAGGATGAGATTTAG
Found at i:115064838 original size:21 final size:19
Alignment explanation
Indices: 115064798--115064843 Score: 56
Period size: 21 Copynumber: 2.3 Consensus size: 19
115064788 TAAATGACTT
* *
115064798 TTTTTTTCATAATTTCTAA
1 TTTTTTTCAAAATTTATAA
115064817 TTTTTTTCAAAATTTTTATAA
1 TTTTTTTCAAAA--TTTATAA
115064838 TTTTTT
1 TTTTTT
115064844 AAGTATGTTT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
19 11 0.48
21 12 0.52
ACGTcount: A:0.26, C:0.07, G:0.00, T:0.67
Consensus pattern (19 bp):
TTTTTTTCAAAATTTATAA
Found at i:115071213 original size:17 final size:18
Alignment explanation
Indices: 115071176--115071213 Score: 76
Period size: 18 Copynumber: 2.1 Consensus size: 18
115071166 GTTCCATTTA
115071176 TTTTTCATAAAATAACTT
1 TTTTTCATAAAATAACTT
115071194 TTTTTCATAAAATAACTT
1 TTTTTCATAAAATAACTT
115071212 TT
1 TT
115071214 AACGTTAAGA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.37, C:0.11, G:0.00, T:0.53
Consensus pattern (18 bp):
TTTTTCATAAAATAACTT
Found at i:115071453 original size:31 final size:32
Alignment explanation
Indices: 115071409--115071470 Score: 90
Period size: 31 Copynumber: 2.0 Consensus size: 32
115071399 TCTAGTAGCT
* *
115071409 TAAATAAAAAACTTTCGAATAGTTTAATGATA
1 TAAATAAAAAACTTTCGAATAGGTCAATGATA
*
115071441 TAAAT-AAAAACTTTTGAATAGGTCAATGAT
1 TAAATAAAAAACTTTCGAATAGGTCAATGAT
115071471 CGTTTTATAA
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
31 22 0.81
32 5 0.19
ACGTcount: A:0.48, C:0.06, G:0.11, T:0.34
Consensus pattern (32 bp):
TAAATAAAAAACTTTCGAATAGGTCAATGATA
Found at i:115078331 original size:23 final size:22
Alignment explanation
Indices: 115078300--115078350 Score: 59
Period size: 23 Copynumber: 2.3 Consensus size: 22
115078290 ATTTAAATAG
*
115078300 TAAATATATT-TTTAAAAAATAT
1 TAAAAATATTATTTAAAAAAT-T
*
115078322 ATAAAAATATTATTTAATAAATT
1 -TAAAAATATTATTTAAAAAATT
115078345 TAAAAA
1 TAAAAA
115078351 GTAAACATGA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
22 6 0.24
23 10 0.40
24 9 0.36
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (22 bp):
TAAAAATATTATTTAAAAAATT
Found at i:115082206 original size:6 final size:6
Alignment explanation
Indices: 115082195--115082226 Score: 64
Period size: 6 Copynumber: 5.3 Consensus size: 6
115082185 TTTTTTATAT
115082195 TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA TT
1 TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA TT
115082227 ATTAATATAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 26 1.00
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (6 bp):
TTTAAA
Found at i:115086159 original size:25 final size:25
Alignment explanation
Indices: 115086124--115086206 Score: 71
Period size: 25 Copynumber: 3.4 Consensus size: 25
115086114 AGCACTCTCT
115086124 TGAG-CATATAATAGGAAGCTCATG
1 TGAGCCATATAATAGGAAGCTCATG
** * *
115086148 TGAGCCATATAACGGGAAGCTTATCT
1 TGAGCCATATAATAGGAAGCTCAT-G
* *
115086174 TG-GCTATATAATAAGAAGCTCATG
1 TGAGCCATATAATAGGAAGCTCATG
* *
115086198 CGAGTCATA
1 TGAGCCATA
115086207 ATCGGGAAGT
Statistics
Matches: 43, Mismatches: 13, Indels: 5
0.70 0.21 0.08
Matches are distributed among these distances:
24 5 0.12
25 36 0.84
26 2 0.05
ACGTcount: A:0.35, C:0.16, G:0.23, T:0.27
Consensus pattern (25 bp):
TGAGCCATATAATAGGAAGCTCATG
Found at i:115086192 original size:50 final size:49
Alignment explanation
Indices: 115086121--115086220 Score: 130
Period size: 50 Copynumber: 2.0 Consensus size: 49
115086111 GGAAGCACTC
* *
115086121 TCTTGAGCATATAATAGGAAGCTCATGTGAGCCATATAACGGGAAGCTTA
1 TCTTGAGCATATAATAAGAAGCTCATGCGAGCCATA-AACGGGAAGCTTA
* * *
115086171 TCTTG-GCTATATAATAAGAAGCTCATGCGAGTCATAATCGGGAAGTTTA
1 TCTTGAGC-ATATAATAAGAAGCTCATGCGAGCCATAAACGGGAAGCTTA
115086220 T
1 T
115086221 GCAAGCCAAT
Statistics
Matches: 44, Mismatches: 5, Indels: 3
0.85 0.10 0.06
Matches are distributed among these distances:
49 14 0.32
50 30 0.68
ACGTcount: A:0.33, C:0.15, G:0.23, T:0.29
Consensus pattern (49 bp):
TCTTGAGCATATAATAAGAAGCTCATGCGAGCCATAAACGGGAAGCTTA
Found at i:115086434 original size:24 final size:24
Alignment explanation
Indices: 115086407--115086467 Score: 88
Period size: 24 Copynumber: 2.5 Consensus size: 24
115086397 TGAAGAGCTT
* *
115086407 TAACAGGAAGCTCGA-GAGGGCTAA
1 TAACAGGATGCTC-ATGAGAGCTAA
115086431 TAACAGGATGCTCATGAGAGCTAA
1 TAACAGGATGCTCATGAGAGCTAA
115086455 TAACAGGATGCTC
1 TAACAGGATGCTC
115086468 TTTCGAGTTG
Statistics
Matches: 34, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
23 1 0.03
24 33 0.97
ACGTcount: A:0.36, C:0.18, G:0.28, T:0.18
Consensus pattern (24 bp):
TAACAGGATGCTCATGAGAGCTAA
Found at i:115090434 original size:21 final size:20
Alignment explanation
Indices: 115090404--115090451 Score: 51
Period size: 21 Copynumber: 2.3 Consensus size: 20
115090394 TTAAGAATTA
* *
115090404 TTTTAGTATTATTTTTATTT
1 TTTTAATATTATTTTTATGT
*
115090424 GTTTTAATATTTGTTTTTATGT
1 -TTTTAATA-TTATTTTTATGT
115090446 TTTTAA
1 TTTTAA
115090452 ATATATTTGA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
21 13 0.57
22 10 0.43
ACGTcount: A:0.21, C:0.00, G:0.08, T:0.71
Consensus pattern (20 bp):
TTTTAATATTATTTTTATGT
Found at i:115090474 original size:26 final size:24
Alignment explanation
Indices: 115090430--115090477 Score: 69
Period size: 26 Copynumber: 1.9 Consensus size: 24
115090420 ATTTGTTTTA
*
115090430 ATATTTGTTTTTATGTTTTTAAAT
1 ATATTTGTTTTTATATTTTTAAAT
115090454 ATATTTGATTTATTATATTTTTAA
1 ATATTTG-TTT-TTATATTTTTAA
115090478 TTTTTTTTAT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 7 0.33
25 3 0.14
26 11 0.52
ACGTcount: A:0.29, C:0.00, G:0.06, T:0.65
Consensus pattern (24 bp):
ATATTTGTTTTTATATTTTTAAAT
Found at i:115095596 original size:21 final size:21
Alignment explanation
Indices: 115095570--115095610 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
115095560 ATCTGCTCAA
* *
115095570 ACTCCACCTGTTTTGGAGTAC
1 ACTCCACCTGCTGTGGAGTAC
115095591 ACTCCACCTGCTGTGGAGTA
1 ACTCCACCTGCTGTGGAGTA
115095611 TTGCTCGTCT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.20, C:0.29, G:0.22, T:0.29
Consensus pattern (21 bp):
ACTCCACCTGCTGTGGAGTAC
Found at i:115098798 original size:9 final size:9
Alignment explanation
Indices: 115098784--115098842 Score: 75
Period size: 9 Copynumber: 6.6 Consensus size: 9
115098774 ATAAGTATAA
115098784 AATTAACCG
1 AATTAACCG
115098793 AATTAACCG
1 AATTAACCG
115098802 AATT-ACCAG
1 AATTAACC-G
* *
115098811 AATTACCCA
1 AATTAACCG
115098820 AATTAACCG
1 AATTAACCG
*
115098829 AATTAACAG
1 AATTAACCG
115098838 AATTA
1 AATTA
115098843 TTTGTATAAA
Statistics
Matches: 43, Mismatches: 5, Indels: 4
0.83 0.10 0.08
Matches are distributed among these distances:
8 3 0.07
9 38 0.88
10 2 0.05
ACGTcount: A:0.47, C:0.20, G:0.08, T:0.24
Consensus pattern (9 bp):
AATTAACCG
Found at i:115098814 original size:27 final size:27
Alignment explanation
Indices: 115098784--115098842 Score: 91
Period size: 27 Copynumber: 2.2 Consensus size: 27
115098774 ATAAGTATAA
* *
115098784 AATTAACCGAATTAACCGAATTACCAG
1 AATTAACCAAATTAACCGAATTAACAG
*
115098811 AATTACCCAAATTAACCGAATTAACAG
1 AATTAACCAAATTAACCGAATTAACAG
115098838 AATTA
1 AATTA
115098843 TTTGTATAAA
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 29 1.00
ACGTcount: A:0.47, C:0.20, G:0.08, T:0.24
Consensus pattern (27 bp):
AATTAACCAAATTAACCGAATTAACAG
Found at i:115098877 original size:5 final size:6
Alignment explanation
Indices: 115098862--115098902 Score: 55
Period size: 6 Copynumber: 6.5 Consensus size: 6
115098852 AATTATATGT
*
115098862 TTTTTA TTTTTA TTTTTA GTTTTAGA TTTTTA TTTTTA TTT
1 TTTTTA TTTTTA TTTTTA -TTTT-TA TTTTTA TTTTTA TTT
115098903 ATTAAATTAT
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
6 22 0.71
7 8 0.26
8 1 0.03
ACGTcount: A:0.17, C:0.00, G:0.05, T:0.78
Consensus pattern (6 bp):
TTTTTA
Found at i:115099272 original size:34 final size:34
Alignment explanation
Indices: 115099229--115099303 Score: 141
Period size: 34 Copynumber: 2.2 Consensus size: 34
115099219 GTGTGCATCC
*
115099229 GCAATACCAATTGGGGCGTATCATTCCCATATCT
1 GCAATACCAATTGGCGCGTATCATTCCCATATCT
115099263 GCAATACCAATTGGCGCGTATCATTCCCATATCT
1 GCAATACCAATTGGCGCGTATCATTCCCATATCT
115099297 GCAATAC
1 GCAATAC
115099304 GATAATATTA
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
34 40 1.00
ACGTcount: A:0.28, C:0.28, G:0.16, T:0.28
Consensus pattern (34 bp):
GCAATACCAATTGGCGCGTATCATTCCCATATCT
Found at i:115099733 original size:197 final size:195
Alignment explanation
Indices: 115099338--115099917 Score: 792
Period size: 197 Copynumber: 3.0 Consensus size: 195
115099328 TTTAAAAGTC
115099338 ACACATACATCATCCAATTATAGTTTGAAGTTAATAACTTACTCAAATTTTAGATAAAA-GAAGC
1 ACACATACATCATCCAATTATAGTTTGAAGTTAATAA---A-TCAAATTTTAGATAAAAGGAAGC
* *
115099402 AACATAATGTTACTGCTCAAATTATGTTTTTATCTTTATATTATATTTAATTTAAAGACTTAAAC
62 AACAT-ATGTTATTGGTCAAATTATGTTTTTATCTTTATATTATATTTAATTTAAAGACTTAAAC
* **
115099467 AACATACTTTAACTTATTCAAACTTAATTTTATTTGGGTTCATTCACTTTAGGTACATAAAAATA
126 AACATACTTTAACTTATTCAAACTTAATTTTACTTGGGTTCATTCACTTTAAATACATAAAAATA
115099532 ATTTA
191 ATTTA
* * *
115099537 ACACATACATCAACCAATTATAGTTTGAAGTTAATAAGT-AAGTTTTAGATAAAAGGAAGCAACA
1 ACACATACATCATCCAATTATAGTTTGAAGTTAATAAATCAAATTTTAGATAAAAGGAAGCAACA
115099601 TATGTTATATTGGTCAAATTATGTTTTTATCTTTATATTATATTTAATTTAAAGACTTAAACAAC
66 TATG-T-TATTGGTCAAATTATGTTTTTATCTTTATATTATATTTAATTTAAAGACTTAAACAAC
*
115099666 ATACTTTTAACTTTTTCAAACTTAATTTTACTTGGGTTCATTCACTTTAAATACATAAAAATAAT
129 ATAC-TTTAACTTATTCAAACTTAATTTTACTTGGGTTCATTCACTTTAAATACATAAAAATAAT
115099731 TTA
193 TTA
* * *
115099734 ACGCATACATCATCCAATTATAGTTTGAAGTTAATAACTTATACAAATTTTAAATAAAAGAAAGC
1 ACACATACATCATCCAATTATAGTTTGAAGTTAATAA---AT-CAAATTTTAGATAAAAGGAAGC
* *
115099799 CACATATGTTATTGGTCAAATTATGTTTTTATCTTTATATTATATTTAA-TT------TT----G
62 AACATATGTTATTGGTCAAATTATGTTTTTATCTTTATATTATATTTAATTTAAAGACTTAAACA
* ** *
115099853 A-AGACTTTAACTTATTCAAACTTAATTTTGTTTGGGTTCATTCACTTTAAATACATACAAATAA
127 ACATACTTTAACTTATTCAAACTTAATTTTACTTGGGTTCATTCACTTTAAATACATAAAAATAA
115099917 T
192 T
115099918 CTAAATTCAG
Statistics
Matches: 350, Mismatches: 22, Indels: 30
0.87 0.05 0.07
Matches are distributed among these distances:
187 56 0.16
188 3 0.01
189 1 0.00
193 2 0.01
194 17 0.05
195 12 0.03
196 60 0.17
197 94 0.27
199 38 0.11
200 41 0.12
201 1 0.00
202 25 0.07
ACGTcount: A:0.39, C:0.12, G:0.08, T:0.41
Consensus pattern (195 bp):
ACACATACATCATCCAATTATAGTTTGAAGTTAATAAATCAAATTTTAGATAAAAGGAAGCAACA
TATGTTATTGGTCAAATTATGTTTTTATCTTTATATTATATTTAATTTAAAGACTTAAACAACAT
ACTTTAACTTATTCAAACTTAATTTTACTTGGGTTCATTCACTTTAAATACATAAAAATAATTTA
Found at i:115101953 original size:28 final size:28
Alignment explanation
Indices: 115101921--115101978 Score: 116
Period size: 28 Copynumber: 2.1 Consensus size: 28
115101911 AACCTTAACT
115101921 ATTTTCAAGTTTTGGGTTAATTTTTTTA
1 ATTTTCAAGTTTTGGGTTAATTTTTTTA
115101949 ATTTTCAAGTTTTGGGTTAATTTTTTTA
1 ATTTTCAAGTTTTGGGTTAATTTTTTTA
115101977 AT
1 AT
115101979 CCTATAAAAT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 30 1.00
ACGTcount: A:0.22, C:0.03, G:0.14, T:0.60
Consensus pattern (28 bp):
ATTTTCAAGTTTTGGGTTAATTTTTTTA
Found at i:115102836 original size:18 final size:18
Alignment explanation
Indices: 115102813--115102855 Score: 61
Period size: 18 Copynumber: 2.4 Consensus size: 18
115102803 CCCGTTCGCT
115102813 CAGCGCCGCAGC-AGCCTC
1 CAGCGCCGCA-CAAGCCTC
*
115102831 CAGCGCCGTACAAGCCTC
1 CAGCGCCGCACAAGCCTC
115102849 CAGCGCC
1 CAGCGCC
115102856 TCCGTACACC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
17 1 0.04
18 22 0.96
ACGTcount: A:0.19, C:0.49, G:0.26, T:0.07
Consensus pattern (18 bp):
CAGCGCCGCACAAGCCTC
Found at i:115104400 original size:130 final size:132
Alignment explanation
Indices: 115104140--115104392 Score: 278
Period size: 130 Copynumber: 1.9 Consensus size: 132
115104130 AAGCTAGTTT
* * * * * ** * *
115104140 CACGGCTATTAAAAATCCTTTAAAACAAAGGCGATATTCGATGCTTGGTGATTCATGGAATCGTG
1 CACGGCTATCAAAAATCCCTTAAAACAAAGGCAATATACGATACTTGGCAATTCAGGGAATCATG
* * * *
115104205 CCCTAACGTGTTAAGTTGCAATTCCTCGTTTGCTAAAAGTAATTGAAGGTCCCTTTAGAATTTCA
66 CCCTAACGTGCTAAGTTGCAATTCCTCGTTTGCTAAAAGCAATCGAAGATCCCTTTAGAATTTCA
115104270 CC
131 CC
*
115104272 CACGGCTATCAAAAATCCCTT-AAACAAAGGCAATATACGATATTTGGCAATTC-GGGAATCATG
1 CACGGCTATCAAAAATCCCTTAAAACAAAGGCAATATACGATACTTGGCAATTCAGGGAATCATG
* ** ** * * *
115104335 CCCTATCGTGCTGGGTTGTGATTTCTCGTTTGCTCAAAA-CAATCGAATATTCCTTTAG
66 CCCTAACGTGCTAAGTTGCAATTCCTCGTTTGCT-AAAAGCAATCGAAGATCCCTTTAG
115104393 GTTTTCACTC
Statistics
Matches: 98, Mismatches: 22, Indels: 4
0.79 0.18 0.03
Matches are distributed among these distances:
130 49 0.50
131 30 0.31
132 19 0.19
ACGTcount: A:0.30, C:0.21, G:0.19, T:0.31
Consensus pattern (132 bp):
CACGGCTATCAAAAATCCCTTAAAACAAAGGCAATATACGATACTTGGCAATTCAGGGAATCATG
CCCTAACGTGCTAAGTTGCAATTCCTCGTTTGCTAAAAGCAATCGAAGATCCCTTTAGAATTTCA
CC
Found at i:115108161 original size:119 final size:119
Alignment explanation
Indices: 115107945--115108172 Score: 411
Period size: 119 Copynumber: 1.9 Consensus size: 119
115107935 ACATGTATTT
115107945 GGGCACTATTCAAAGTAAGCAAAATTTAATTGAATCTGAATGAAGATTACCTTCTAGTTCTCTGT
1 GGGCACTATTCAAAGTAAGCAAAATTTAATTGAATCTGAATGAAGATTACCTTCTAGTTCTCTGT
* *
115108010 AATCATTCGGTAGAGAAATTCACTAATTTACCAGGTTCTCATCATGGTATCAGA
66 AACCATTCGGTAGAGAAATTCACTAATATACCAGGTTCTCATCATGGTATCAGA
*
115108064 GGGCACTATTCAAAGTAAGCAAAGTTTAATTGAATCTGAATGAAGATTACCTTCTAGTTCTCTGT
1 GGGCACTATTCAAAGTAAGCAAAATTTAATTGAATCTGAATGAAGATTACCTTCTAGTTCTCTGT
* *
115108129 AACCATTCGGTAGAGAAATTCACTAGTATACCAGGTTTTCATCA
66 AACCATTCGGTAGAGAAATTCACTAATATACCAGGTTCTCATCA
115108173 CACTCAGAAT
Statistics
Matches: 104, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
119 104 1.00
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.32
Consensus pattern (119 bp):
GGGCACTATTCAAAGTAAGCAAAATTTAATTGAATCTGAATGAAGATTACCTTCTAGTTCTCTGT
AACCATTCGGTAGAGAAATTCACTAATATACCAGGTTCTCATCATGGTATCAGA
Found at i:115109945 original size:31 final size:31
Alignment explanation
Indices: 115109910--115109971 Score: 124
Period size: 31 Copynumber: 2.0 Consensus size: 31
115109900 GCTTTAATAG
115109910 AAAGAGGTATGAAGTCTGAATCACCATCCAA
1 AAAGAGGTATGAAGTCTGAATCACCATCCAA
115109941 AAAGAGGTATGAAGTCTGAATCACCATCCAA
1 AAAGAGGTATGAAGTCTGAATCACCATCCAA
115109972 CCCAATGGTA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.42, C:0.19, G:0.19, T:0.19
Consensus pattern (31 bp):
AAAGAGGTATGAAGTCTGAATCACCATCCAA
Found at i:115124263 original size:23 final size:23
Alignment explanation
Indices: 115124237--115124289 Score: 97
Period size: 23 Copynumber: 2.3 Consensus size: 23
115124227 TTTCTAGCAT
115124237 TAAAATTATTTATGAATGGCTAA
1 TAAAATTATTTATGAATGGCTAA
*
115124260 TAAAATTATTTATGATTGGCTAA
1 TAAAATTATTTATGAATGGCTAA
115124283 TAAAATT
1 TAAAATT
115124290 TAAAGTATTT
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
23 29 1.00
ACGTcount: A:0.43, C:0.04, G:0.11, T:0.42
Consensus pattern (23 bp):
TAAAATTATTTATGAATGGCTAA
Found at i:115132191 original size:23 final size:23
Alignment explanation
Indices: 115132161--115132207 Score: 85
Period size: 23 Copynumber: 2.0 Consensus size: 23
115132151 TTTCATTTTA
115132161 GGCTTATATAATGCTTAGATTTG
1 GGCTTATATAATGCTTAGATTTG
*
115132184 GGCTTATATTATGCTTAGATTTG
1 GGCTTATATAATGCTTAGATTTG
115132207 G
1 G
115132208 TTTCTTTTTG
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.23, C:0.09, G:0.23, T:0.45
Consensus pattern (23 bp):
GGCTTATATAATGCTTAGATTTG
Found at i:115132840 original size:22 final size:22
Alignment explanation
Indices: 115132800--115132908 Score: 146
Period size: 22 Copynumber: 4.8 Consensus size: 22
115132790 CCACGGTTAT
*
115132800 CCCGGTTCGGGTTTTTTCGTGAA
1 CCCGGTTCGAG-TTTTTCGTGAA
115132823 CCCGGTTCGAGTTTTTCGTGAA
1 CCCGGTTCGAGTTTTTCGTGAA
*
115132845 CCCGGTTCGAGTTTTTCCTGAA
1 CCCGGTTCGAGTTTTTCGTGAA
*
115132867 CCCGGTTCGAGTTTTTTTTGTGAA
1 CCCGGTTCGAG--TTTTTCGTGAA
*
115132891 CCCGGTTCGGGTTATTTC
1 CCCGGTTCGAGTT-TTTC
115132909 AATCCCGGTT
Statistics
Matches: 77, Mismatches: 6, Indels: 6
0.87 0.07 0.07
Matches are distributed among these distances:
22 45 0.58
23 13 0.17
24 19 0.25
ACGTcount: A:0.11, C:0.23, G:0.27, T:0.39
Consensus pattern (22 bp):
CCCGGTTCGAGTTTTTCGTGAA
Found at i:115132883 original size:45 final size:45
Alignment explanation
Indices: 115132800--115132927 Score: 158
Period size: 44 Copynumber: 2.9 Consensus size: 45
115132790 CCACGGTTAT
*
115132800 CCCGGTTCGGGTTTTTTCGTGAACCCGGTTCGAG-TTTTTCGTGAA
1 CCCGGTTCGGG-TTTTTCCTGAACCCGGTTCGAGTTTTTTCGTGAA
* *
115132845 CCCGGTTCGAGTTTTTCCTGAACCCGGTTCGAGTTTTTTTTGTGAA
1 CCCGGTTCGGGTTTTTCCTGAACCCGGTTCGAG-TTTTTTCGTGAA
115132891 CCCGGTTCGGGTTATTT-C--AATCCCGGTTC-AGTTTTTT
1 CCCGGTTCGGGTT-TTTCCTGAA-CCCGGTTCGAGTTTTTT
115132928 TGGGTTTAGG
Statistics
Matches: 75, Mismatches: 4, Indels: 10
0.84 0.04 0.11
Matches are distributed among these distances:
43 6 0.08
44 25 0.33
45 18 0.24
46 23 0.31
47 3 0.04
ACGTcount: A:0.12, C:0.23, G:0.25, T:0.41
Consensus pattern (45 bp):
CCCGGTTCGGGTTTTTCCTGAACCCGGTTCGAGTTTTTTCGTGAA
Found at i:115132978 original size:8 final size:7
Alignment explanation
Indices: 115132950--115132975 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
115132940 TTGGGTTTGT
115132950 GGGTTGG
1 GGGTTGG
115132957 GGGTTGG
1 GGGTTGG
115132964 GGGTTGG
1 GGGTTGG
115132971 GGGTT
1 GGGTT
115132976 TGGAGACTTT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.00, C:0.00, G:0.69, T:0.31
Consensus pattern (7 bp):
GGGTTGG
Found at i:115133818 original size:7 final size:7
Alignment explanation
Indices: 115133809--115140250 Score: 11785
Period size: 7 Copynumber: 924.4 Consensus size: 7
115133799 CGTTCCATTG
*
115133809 GGGTTTG
1 GGGTTTA
*
115133816 GGGTTTG
1 GGGTTTA
115133823 GGGTTT-
1 GGGTTTA
115133829 GGGTTT-
1 GGGTTTA
*
115133835 GGGTTTG
1 GGGTTTA
115133842 GGGTTT-
1 GGGTTTA
115133848 GGGTTTTA
1 GGG-TTTA
*
115133856 GGGTCTA
1 GGGTTTA
*
115133863 GGGTTTT
1 GGGTTTA
*
115133870 GGG-TTG
1 GGGTTTA
*
115133876 GGGGTTA
1 GGGTTTA
**
115133883 GGGTTGG
1 GGGTTTA
115133890 GGGTTT-
1 GGGTTTA
115133896 GGG-TT-
1 GGGTTTA
115133901 GGG-TT-
1 GGGTTTA
115133906 GGGTTTA
1 GGGTTTA
115133913 GGGTTTA
1 GGGTTTA
115133920 GGGTTTTA
1 GGG-TTTA
115133928 GGGTTTA
1 GGGTTTA
115133935 GGGTTTA
1 GGGTTTA
115133942 GGGTTTA
1 GGGTTTA
115133949 GGG-TTA
1 GGGTTTA
115133955 GGGTTTA
1 GGGTTTA
115133962 GGGTTTA
1 GGGTTTA
115133969 GGGTTTA
1 GGGTTTA
115133976 -GGTTTA
1 GGGTTTA
* *
115133982 GGGGTCA
1 GGGTTTA
115133989 GGG-TT-
1 GGGTTTA
* *
115133994 GGGGTTG
1 GGGTTTA
*
115134001 GGGTTTG
1 GGGTTTA
**
115134008 GGGTTGG
1 GGGTTTA
*
115134015 GGGTTTG
1 GGGTTTA
115134022 GGGTTT-
1 GGGTTTA
*
115134028 GGGTTTT
1 GGGTTTA
115134035 GGGTTT-
1 GGGTTTA
115134041 GGGTTT-
1 GGGTTTA
*
115134047 GGGGTT-
1 GGGTTTA
115134053 GGG-TT-
1 GGGTTTA
* *
115134058 GGGGTTG
1 GGGTTTA
115134065 GGGTTTCTTA
1 GGG--T-TTA
*
115134075 GGGTTGTTT
1 GGG-T-TTA
*
115134084 GGG-TTG
1 GGGTTTA
115134090 GGGTTTA
1 GGGTTTA
115134097 GGGTTTA
1 GGGTTTA
115134104 GGGTTTA
1 GGGTTTA
115134111 GGGTTTTA
1 GGG-TTTA
115134119 GGGTTT-
1 GGGTTTA
*
115134125 GGGTTTT
1 GGGTTTA
115134132 GGGTTT-
1 GGGTTTA
115134138 GGGTTTA
1 GGGTTTA
115134145 GGGTTTA
1 GGGTTTA
115134152 -GGTTT-
1 GGGTTTA
115134157 GGGTTT-
1 GGGTTTA
*
115134163 GGGTTTG
1 GGGTTTA
*
115134170 GGGTTTG
1 GGGTTTA
115134177 GGGTTTA
1 GGGTTTA
115134184 GGGTTTA
1 GGGTTTA
115134191 GGGTTTA
1 GGGTTTA
*
115134198 GGGTTTG
1 GGGTTTA
115134205 GGGTTTA
1 GGGTTTA
*
115134212 GGGTTTG
1 GGGTTTA
115134219 GGGTTTA
1 GGGTTTA
115134226 GGGTTTA
1 GGGTTTA
115134233 GGGTTTA
1 GGGTTTA
115134240 GGG-TTA
1 GGGTTTA
115134246 GGGTTTA
1 GGGTTTA
115134253 GGG-TTA
1 GGGTTTA
115134259 GGGTTTA
1 GGGTTTA
115134266 GGGTTTA
1 GGGTTTA
115134273 GGGTTTA
1 GGGTTTA
115134280 GGGTTTA
1 GGGTTTA
115134287 GGGTTTA
1 GGGTTTA
115134294 GGG--TA
1 GGGTTTA
115134299 GGGTTTA
1 GGGTTTA
115134306 GGGTTTA
1 GGGTTTA
115134313 GGGTTTA
1 GGGTTTA
115134320 GGG-TTA
1 GGGTTTA
115134326 GGGTTTA
1 GGGTTTA
115134333 GGGTTTA
1 GGGTTTA
115134340 GGGTTTA
1 GGGTTTA
115134347 GGGTTTTA
1 GGG-TTTA
115134355 GGGTTTTA
1 GGG-TTTA
115134363 GGGTTTA
1 GGGTTTA
115134370 GGGTTTA
1 GGGTTTA
115134377 GGGTTTA
1 GGGTTTA
115134384 GGGTTT-
1 GGGTTTA
115134390 GGGTTTA
1 GGGTTTA
115134397 GGGTTTA
1 GGGTTTA
115134404 GGGTTT-
1 GGGTTTA
*
115134410 TGG-TTA
1 GGGTTTA
115134416 GGGTTTA
1 GGGTTTA
115134423 GGGTTTA
1 GGGTTTA
115134430 GGGTTTA
1 GGGTTTA
115134437 GGGTTTA
1 GGGTTTA
115134444 GGGTTTA
1 GGGTTTA
115134451 GGGTTTA
1 GGGTTTA
115134458 GGGTTTA
1 GGGTTTA
115134465 GGGTTTA
1 GGGTTTA
115134472 GGG-TTA
1 GGGTTTA
115134478 GGGTTTA
1 GGGTTTA
115134485 GGGTTTA
1 GGGTTTA
115134492 GGGTTTA
1 GGGTTTA
115134499 GGGTTTA
1 GGGTTTA
115134506 GGG-TTA
1 GGGTTTA
115134512 GGGTTTA
1 GGGTTTA
115134519 GGGTTTA
1 GGGTTTA
115134526 GGGTTTA
1 GGGTTTA
115134533 GGGTTTA
1 GGGTTTA
115134540 GGGTTTA
1 GGGTTTA
115134547 GGGTTTA
1 GGGTTTA
115134554 GGGTTTA
1 GGGTTTA
115134561 GGGTTTA
1 GGGTTTA
115134568 GGGTTTA
1 GGGTTTA
115134575 GGG-TTA
1 GGGTTTA
115134581 GGG-TTA
1 GGGTTTA
115134587 GGGTTTA
1 GGGTTTA
115134594 GGGTTTA
1 GGGTTTA
115134601 GGGTTTA
1 GGGTTTA
115134608 GGGTTTA
1 GGGTTTA
115134615 GGGTTTA
1 GGGTTTA
115134622 GGGTTTA
1 GGGTTTA
115134629 GGG-TTA
1 GGGTTTA
115134635 GGG-TTA
1 GGGTTTA
115134641 GGGTTTA
1 GGGTTTA
115134648 GGG-TTA
1 GGGTTTA
115134654 GGGTTTA
1 GGGTTTA
115134661 GGGTTTA
1 GGGTTTA
115134668 GGGTTTA
1 GGGTTTA
115134675 GGGTTTA
1 GGGTTTA
115134682 GGG-TTA
1 GGGTTTA
115134688 GGG-TTA
1 GGGTTTA
115134694 GGGTTTA
1 GGGTTTA
115134701 GGG-TTA
1 GGGTTTA
115134707 GGGTTTA
1 GGGTTTA
115134714 GGGTTTA
1 GGGTTTA
115134721 GGGTTTA
1 GGGTTTA
115134728 GGG-TTA
1 GGGTTTA
115134734 GGGTTTA
1 GGGTTTA
115134741 GGGTTTA
1 GGGTTTA
115134748 GGGTTTA
1 GGGTTTA
115134755 GGG-TTA
1 GGGTTTA
*
115134761 GGGGTTA
1 GGGTTTA
115134768 GGGTTTA
1 GGGTTTA
115134775 GGGTTTA
1 GGGTTTA
115134782 GGGTTTA
1 GGGTTTA
115134789 GGGTTTA
1 GGGTTTA
115134796 GGGTTTA
1 GGGTTTA
115134803 GGGTTTA
1 GGGTTTA
115134810 GGGTTTA
1 GGGTTTA
115134817 GGGTTTA
1 GGGTTTA
115134824 GGGTTTA
1 GGGTTTA
115134831 GGGTTTA
1 GGGTTTA
115134838 GGGTTTA
1 GGGTTTA
115134845 GGGTTTA
1 GGGTTTA
115134852 GGGTTTTA
1 GGG-TTTA
115134860 GGGTTTA
1 GGGTTTA
115134867 GGGTTTA
1 GGGTTTA
115134874 GGGTTTA
1 GGGTTTA
115134881 GGGTTTA
1 GGGTTTA
115134888 GGGTTTA
1 GGGTTTA
115134895 GGGTTTA
1 GGGTTTA
115134902 GGGTTTA
1 GGGTTTA
115134909 GGGTTTA
1 GGGTTTA
115134916 GGGTTTA
1 GGGTTTA
115134923 GGG-TTA
1 GGGTTTA
115134929 GGGTTTA
1 GGGTTTA
115134936 GGGTTTA
1 GGGTTTA
115134943 GGGTTTA
1 GGGTTTA
115134950 GGGTTTA
1 GGGTTTA
115134957 GGGTTTA
1 GGGTTTA
115134964 GGGTTTA
1 GGGTTTA
115134971 GGGTTTA
1 GGGTTTA
115134978 GGGTTTA
1 GGGTTTA
115134985 GGGTTTA
1 GGGTTTA
115134992 GGGTTTA
1 GGGTTTA
115134999 GGGTTTA
1 GGGTTTA
115135006 GGGTTTA
1 GGGTTTA
115135013 GGGTTTA
1 GGGTTTA
115135020 GGGTTTA
1 GGGTTTA
115135027 GGGTTTA
1 GGGTTTA
115135034 GGGTTTA
1 GGGTTTA
115135041 GGGTTTA
1 GGGTTTA
115135048 GGGTTTA
1 GGGTTTA
115135055 GGGTTTA
1 GGGTTTA
115135062 GGGTTTA
1 GGGTTTA
115135069 GGGTTTA
1 GGGTTTA
115135076 GGGTTTA
1 GGGTTTA
115135083 GGGTTTA
1 GGGTTTA
115135090 GGGTTTA
1 GGGTTTA
115135097 GGGTTTTA
1 GGG-TTTA
115135105 GGGTTTA
1 GGGTTTA
115135112 GGGTTTA
1 GGGTTTA
115135119 GGGTTTA
1 GGGTTTA
115135126 GGGTTTA
1 GGGTTTA
115135133 GGGTTTA
1 GGGTTTA
115135140 GGGTTTA
1 GGGTTTA
115135147 GGGTTTA
1 GGGTTTA
115135154 GGGTTTTA
1 GGG-TTTA
115135162 GGGTTTA
1 GGGTTTA
115135169 GGGTTTA
1 GGGTTTA
115135176 GGGTTTA
1 GGGTTTA
115135183 GGGTTTA
1 GGGTTTA
115135190 GGGTTTA
1 GGGTTTA
115135197 GGGTTTA
1 GGGTTTA
115135204 GGGTTTA
1 GGGTTTA
115135211 GGGTTTA
1 GGGTTTA
115135218 GGGTTTA
1 GGGTTTA
115135225 GGGTTTA
1 GGGTTTA
115135232 GGGTTTTA
1 GGG-TTTA
115135240 GGGTTTA
1 GGGTTTA
115135247 GGGTTTA
1 GGGTTTA
115135254 GGGTTTA
1 GGGTTTA
115135261 GGGTTTA
1 GGGTTTA
115135268 GGGTTTA
1 GGGTTTA
115135275 GGGTTTA
1 GGGTTTA
115135282 GGGTTTA
1 GGGTTTA
115135289 GGGTTTA
1 GGGTTTA
115135296 GGGTTTA
1 GGGTTTA
115135303 GGGTTTA
1 GGGTTTA
115135310 GGGTTTA
1 GGGTTTA
115135317 GGGTTTA
1 GGGTTTA
115135324 GGGTTTA
1 GGGTTTA
115135331 GGGTTTA
1 GGGTTTA
115135338 GGGTTTA
1 GGGTTTA
115135345 GGGTTTA
1 GGGTTTA
115135352 GGGTTTA
1 GGGTTTA
115135359 GGGTTTA
1 GGGTTTA
115135366 GGGTTTA
1 GGGTTTA
115135373 GGGTTTA
1 GGGTTTA
115135380 GGGTTTA
1 GGGTTTA
115135387 GGGTTTA
1 GGGTTTA
115135394 GGGTTTA
1 GGGTTTA
115135401 GGGTTTA
1 GGGTTTA
115135408 GGGTTTA
1 GGGTTTA
115135415 GGGTTTA
1 GGGTTTA
115135422 GGGTTTA
1 GGGTTTA
115135429 GGGTTTA
1 GGGTTTA
115135436 GGGTTTA
1 GGGTTTA
115135443 GGGTTTA
1 GGGTTTA
115135450 GGGTTTA
1 GGGTTTA
115135457 GGGTTTA
1 GGGTTTA
115135464 GGGTTTA
1 GGGTTTA
115135471 GGGTTTA
1 GGGTTTA
115135478 GGGTTTA
1 GGGTTTA
115135485 GGGTTTA
1 GGGTTTA
115135492 GGGTTTA
1 GGGTTTA
115135499 GGGTTTA
1 GGGTTTA
115135506 GGGTTTTA
1 GGG-TTTA
115135514 GGGTTTA
1 GGGTTTA
115135521 GGGTTTA
1 GGGTTTA
115135528 GGGTTTA
1 GGGTTTA
115135535 GGGTTTA
1 GGGTTTA
115135542 GGGTTTA
1 GGGTTTA
115135549 GGGTTTA
1 GGGTTTA
115135556 GGGTTTA
1 GGGTTTA
115135563 GGGTTTA
1 GGGTTTA
115135570 GGGTTTA
1 GGGTTTA
115135577 GGGTTTA
1 GGGTTTA
115135584 GGGTTTA
1 GGGTTTA
115135591 GGGTTTA
1 GGGTTTA
115135598 GGGTTTA
1 GGGTTTA
115135605 GGGTTTA
1 GGGTTTA
115135612 GGGTTTA
1 GGGTTTA
115135619 GGGTTTA
1 GGGTTTA
115135626 GGGTTTA
1 GGGTTTA
115135633 GGGTTTA
1 GGGTTTA
115135640 GGGTTTA
1 GGGTTTA
115135647 GGGTTTA
1 GGGTTTA
115135654 GGGTTTA
1 GGGTTTA
115135661 GGGTTTA
1 GGGTTTA
115135668 GGGTTTA
1 GGGTTTA
115135675 GGGTTTA
1 GGGTTTA
115135682 GGGTTTA
1 GGGTTTA
115135689 GGGTTTA
1 GGGTTTA
115135696 GGGTTTA
1 GGGTTTA
115135703 GGGTTTTA
1 GGG-TTTA
115135711 GGGTTTA
1 GGGTTTA
115135718 GGGTTTA
1 GGGTTTA
115135725 GGGTTTA
1 GGGTTTA
115135732 GGGTTTA
1 GGGTTTA
115135739 GGGTTTA
1 GGGTTTA
115135746 GGGTTTA
1 GGGTTTA
115135753 GGGTTTTA
1 GGG-TTTA
115135761 GGGTTTA
1 GGGTTTA
115135768 GGGTTTA
1 GGGTTTA
115135775 GGGTTTA
1 GGGTTTA
115135782 GGGTTTA
1 GGGTTTA
115135789 GGGTTTA
1 GGGTTTA
115135796 GGGTTTA
1 GGGTTTA
115135803 GGGTTTA
1 GGGTTTA
115135810 GGGTTTA
1 GGGTTTA
115135817 GGGTTTA
1 GGGTTTA
115135824 GGGTTTA
1 GGGTTTA
115135831 GGGTTTA
1 GGGTTTA
115135838 GGGTTTTA
1 GGG-TTTA
115135846 GGGTTTA
1 GGGTTTA
115135853 GGGTTTA
1 GGGTTTA
115135860 GGGTTTA
1 GGGTTTA
115135867 GGGTTTA
1 GGGTTTA
115135874 GGGTTTA
1 GGGTTTA
115135881 GGGTTTA
1 GGGTTTA
115135888 GGGTTTA
1 GGGTTTA
115135895 GGGTTTA
1 GGGTTTA
115135902 GGGTTTA
1 GGGTTTA
115135909 GGGTTTA
1 GGGTTTA
115135916 GGGTTTA
1 GGGTTTA
115135923 GGGTTTA
1 GGGTTTA
115135930 GGGTTTA
1 GGGTTTA
115135937 GGGTTTA
1 GGGTTTA
115135944 GGGTTTA
1 GGGTTTA
115135951 GGGTTTA
1 GGGTTTA
115135958 GGGTTTA
1 GGGTTTA
115135965 GGGTTTA
1 GGGTTTA
115135972 GGGTTTA
1 GGGTTTA
115135979 GGGTTTA
1 GGGTTTA
115135986 GGGTTTA
1 GGGTTTA
115135993 GGGTTTA
1 GGGTTTA
115136000 GGGTTTA
1 GGGTTTA
115136007 GGGTTTA
1 GGGTTTA
115136014 GGGTTTA
1 GGGTTTA
115136021 GGGTTTA
1 GGGTTTA
115136028 GGGTTTA
1 GGGTTTA
115136035 GGGTTTA
1 GGGTTTA
115136042 GGGTTTA
1 GGGTTTA
115136049 GGGTTTA
1 GGGTTTA
115136056 GGGTTTA
1 GGGTTTA
115136063 GGGTTTA
1 GGGTTTA
115136070 GGGTTTA
1 GGGTTTA
115136077 GGGTTTA
1 GGGTTTA
115136084 GGGTTTA
1 GGGTTTA
115136091 GGGTTTA
1 GGGTTTA
115136098 GGGTTTA
1 GGGTTTA
115136105 GGGTTTA
1 GGGTTTA
115136112 GGGTTTA
1 GGGTTTA
115136119 GGGTTTA
1 GGGTTTA
115136126 GGGTTTA
1 GGGTTTA
115136133 GGGTTTA
1 GGGTTTA
115136140 GGGTTTA
1 GGGTTTA
115136147 GGGTTTA
1 GGGTTTA
115136154 GGGTTTA
1 GGGTTTA
115136161 GGGTTTA
1 GGGTTTA
115136168 GGGTTTA
1 GGGTTTA
115136175 GGGTTTA
1 GGGTTTA
115136182 GGGTTTA
1 GGGTTTA
115136189 GGG-TTA
1 GGGTTTA
115136195 GGGTTTA
1 GGGTTTA
115136202 GGGTTTA
1 GGGTTTA
115136209 GGGTTTA
1 GGGTTTA
115136216 GGGTTTA
1 GGGTTTA
115136223 GGGTTTA
1 GGGTTTA
115136230 GGGTTTA
1 GGGTTTA
115136237 GGGTTTA
1 GGGTTTA
115136244 GGGTTTA
1 GGGTTTA
115136251 GGGTTTA
1 GGGTTTA
115136258 GGGTTTA
1 GGGTTTA
115136265 GGGTTTTA
1 GGG-TTTA
115136273 GGGTTTA
1 GGGTTTA
115136280 GGGTTTA
1 GGGTTTA
115136287 GGGTTTA
1 GGGTTTA
115136294 GGGTTTA
1 GGGTTTA
115136301 GGGTTTA
1 GGGTTTA
115136308 GGGTTTA
1 GGGTTTA
115136315 GGGTTTA
1 GGGTTTA
115136322 GGGTTTA
1 GGGTTTA
115136329 GGGTTTTA
1 GGG-TTTA
115136337 GGGTTTA
1 GGGTTTA
115136344 GGGTTTA
1 GGGTTTA
115136351 GGGTTTTA
1 GGG-TTTA
115136359 GGGTTTA
1 GGGTTTA
115136366 GGGTTTA
1 GGGTTTA
115136373 GGGTTTA
1 GGGTTTA
115136380 GGG-TTA
1 GGGTTTA
115136386 GGGTTTA
1 GGGTTTA
115136393 GGGTTTA
1 GGGTTTA
115136400 GGGTTTA
1 GGGTTTA
115136407 GGGTTTA
1 GGGTTTA
115136414 GGGTTTA
1 GGGTTTA
115136421 GGGTTTA
1 GGGTTTA
115136428 GGG-TT-
1 GGGTTTA
115136433 GGTTTGTTTA
1 GG---GTTTA
115136443 GGGTTTA
1 GGGTTTA
115136450 GGGTTTA
1 GGGTTTA
115136457 GGGTTTA
1 GGGTTTA
115136464 GGGTTTA
1 GGGTTTA
115136471 GGGTTTA
1 GGGTTTA
115136478 GGGTTTA
1 GGGTTTA
115136485 GGGTTTA
1 GGGTTTA
115136492 GGGTTTA
1 GGGTTTA
115136499 GGGTTTTA
1 GGG-TTTA
115136507 GGGTTTA
1 GGGTTTA
115136514 GGGTTTA
1 GGGTTTA
115136521 GGGTTTA
1 GGGTTTA
115136528 GGGTTTA
1 GGGTTTA
115136535 GGGTTTA
1 GGGTTTA
115136542 GGGTTTA
1 GGGTTTA
115136549 GGGTTTA
1 GGGTTTA
115136556 GGGTTTA
1 GGGTTTA
115136563 GGGTTTA
1 GGGTTTA
115136570 GGGTTTA
1 GGGTTTA
115136577 GGGTTTA
1 GGGTTTA
115136584 GGGTTTA
1 GGGTTTA
115136591 GGGTTTA
1 GGGTTTA
115136598 GGGTTTA
1 GGGTTTA
115136605 GGGTTTA
1 GGGTTTA
115136612 GGGTTTA
1 GGGTTTA
115136619 GGGTTTA
1 GGGTTTA
115136626 GGGTTTA
1 GGGTTTA
115136633 GGGTTTA
1 GGGTTTA
115136640 GGGTTTA
1 GGGTTTA
115136647 GGGTTTA
1 GGGTTTA
115136654 GGGTTTA
1 GGGTTTA
115136661 GGGTTTA
1 GGGTTTA
115136668 GGGTTTA
1 GGGTTTA
115136675 GGGTTTA
1 GGGTTTA
115136682 GGGTTTA
1 GGGTTTA
115136689 GGGTTTA
1 GGGTTTA
115136696 GGGTTTA
1 GGGTTTA
115136703 GGGTTTA
1 GGGTTTA
115136710 GGGTTTA
1 GGGTTTA
115136717 GGGTTTA
1 GGGTTTA
115136724 GGGTTTA
1 GGGTTTA
115136731 GGGTTTA
1 GGGTTTA
115136738 GGGTTTA
1 GGGTTTA
115136745 GGGTTTA
1 GGGTTTA
115136752 GGGTTTA
1 GGGTTTA
115136759 GGGTTTA
1 GGGTTTA
115136766 GGGTTTA
1 GGGTTTA
115136773 GGGTTTA
1 GGGTTTA
115136780 GGGTTTA
1 GGGTTTA
115136787 GGGTTTA
1 GGGTTTA
115136794 GGG-TTA
1 GGGTTTA
115136800 GGGTTTA
1 GGGTTTA
115136807 GGGTTTA
1 GGGTTTA
115136814 GGGTTTA
1 GGGTTTA
115136821 GGGTTTA
1 GGGTTTA
115136828 GGGTTTA
1 GGGTTTA
115136835 GGGTTTA
1 GGGTTTA
115136842 GGGTTTA
1 GGGTTTA
115136849 GGGTTTA
1 GGGTTTA
115136856 GGGTTTA
1 GGGTTTA
115136863 GGGTTTA
1 GGGTTTA
115136870 GGGTTTA
1 GGGTTTA
115136877 GGGTTTA
1 GGGTTTA
115136884 GGGTTTA
1 GGGTTTA
115136891 GGGTTTA
1 GGGTTTA
115136898 GGGTTTA
1 GGGTTTA
115136905 GGGTTTA
1 GGGTTTA
115136912 GGGTTTA
1 GGGTTTA
115136919 GGGTTTA
1 GGGTTTA
115136926 GGGTTTA
1 GGGTTTA
115136933 GGGTTTA
1 GGGTTTA
115136940 GGGTTTA
1 GGGTTTA
115136947 GGGTTTA
1 GGGTTTA
115136954 GGGTTTA
1 GGGTTTA
115136961 GGGTTTA
1 GGGTTTA
115136968 GGGTTTTA
1 GGG-TTTA
115136976 GGGTTTA
1 GGGTTTA
115136983 GGGTTTA
1 GGGTTTA
115136990 GGGTTTA
1 GGGTTTA
115136997 GGGTTTA
1 GGGTTTA
115137004 GGGTTTA
1 GGGTTTA
115137011 GGGTTTA
1 GGGTTTA
115137018 GGGTTTA
1 GGGTTTA
115137025 GGGTTTA
1 GGGTTTA
115137032 GGGTTTA
1 GGGTTTA
115137039 GGGTTTA
1 GGGTTTA
115137046 GGGTTTA
1 GGGTTTA
115137053 GGGTTTA
1 GGGTTTA
115137060 GGGTTTA
1 GGGTTTA
115137067 GGGTTTA
1 GGGTTTA
115137074 GGGTTTA
1 GGGTTTA
115137081 GGGTTTA
1 GGGTTTA
115137088 GGGTTTA
1 GGGTTTA
115137095 GGGTTTA
1 GGGTTTA
115137102 GGGTTTA
1 GGGTTTA
115137109 GGGTTTA
1 GGGTTTA
115137116 GGGTTTA
1 GGGTTTA
115137123 GGGTTTA
1 GGGTTTA
115137130 GGGTTTA
1 GGGTTTA
115137137 GGGTTTA
1 GGGTTTA
115137144 GGGTTTA
1 GGGTTTA
115137151 GGGTTTA
1 GGGTTTA
115137158 GGGTTTA
1 GGGTTTA
115137165 GGGTTTA
1 GGGTTTA
115137172 GGGTTTA
1 GGGTTTA
115137179 GGGTTTA
1 GGGTTTA
115137186 GGGTTTA
1 GGGTTTA
115137193 GGGTTTA
1 GGGTTTA
115137200 GGGTTTA
1 GGGTTTA
115137207 GGGTTTA
1 GGGTTTA
115137214 GGGTTTA
1 GGGTTTA
115137221 GGGTTTTTA
1 GGG--TTTA
115137230 GGGTTTA
1 GGGTTTA
115137237 GGGTTTA
1 GGGTTTA
115137244 GGGTTTA
1 GGGTTTA
115137251 GGGTTTA
1 GGGTTTA
115137258 GGGTTTA
1 GGGTTTA
115137265 GGGTTTA
1 GGGTTTA
115137272 GGGTTTA
1 GGGTTTA
115137279 GGGTTTA
1 GGGTTTA
115137286 GGGTTTA
1 GGGTTTA
115137293 GGGTTTA
1 GGGTTTA
115137300 GGGTTTA
1 GGGTTTA
115137307 GGGTTTA
1 GGGTTTA
115137314 GGGTTTA
1 GGGTTTA
115137321 GGGTTTA
1 GGGTTTA
115137328 GGGTTTA
1 GGGTTTA
115137335 GGGTTTA
1 GGGTTTA
115137342 GGGTTTA
1 GGGTTTA
115137349 GGGTTTA
1 GGGTTTA
115137356 GGGTTTA
1 GGGTTTA
115137363 GGGTTTA
1 GGGTTTA
115137370 GGGTTTA
1 GGGTTTA
115137377 GGGTTTA
1 GGGTTTA
115137384 GGGTTTA
1 GGGTTTA
115137391 GGGTTTA
1 GGGTTTA
115137398 GGGTTTA
1 GGGTTTA
115137405 GGGTTTA
1 GGGTTTA
115137412 GGGTTTA
1 GGGTTTA
115137419 GGGTTTA
1 GGGTTTA
115137426 GGGTTTA
1 GGGTTTA
115137433 GGGTTTA
1 GGGTTTA
115137440 GGGTTTA
1 GGGTTTA
115137447 GGGTTTA
1 GGGTTTA
115137454 GGGTTTA
1 GGGTTTA
115137461 GGGTTTA
1 GGGTTTA
115137468 GGGTTTA
1 GGGTTTA
115137475 GGGTTTA
1 GGGTTTA
115137482 GGGTTTA
1 GGGTTTA
115137489 GGGTTTA
1 GGGTTTA
115137496 GGGTTTA
1 GGGTTTA
115137503 GGGTTTA
1 GGGTTTA
115137510 GGGTTTTA
1 GGG-TTTA
115137518 GGGTTTA
1 GGGTTTA
115137525 GGGTTTA
1 GGGTTTA
115137532 GGGTTTA
1 GGGTTTA
115137539 GGGTTTA
1 GGGTTTA
115137546 GGGTTTA
1 GGGTTTA
115137553 GGGTTTA
1 GGGTTTA
115137560 GGGTTTA
1 GGGTTTA
115137567 GGGTTTA
1 GGGTTTA
115137574 GGGTTTA
1 GGGTTTA
115137581 GGGTTTA
1 GGGTTTA
115137588 GGGTTTA
1 GGGTTTA
115137595 GGGTTTA
1 GGGTTTA
115137602 GGGTTTA
1 GGGTTTA
115137609 GGGTTTA
1 GGGTTTA
115137616 GGGTTTA
1 GGGTTTA
115137623 GGGTTTA
1 GGGTTTA
115137630 GGGTTTA
1 GGGTTTA
115137637 GGGTTTA
1 GGGTTTA
115137644 GGGTTTA
1 GGGTTTA
115137651 GGGTTTA
1 GGGTTTA
115137658 GGGTTTA
1 GGGTTTA
115137665 GGGTTTA
1 GGGTTTA
115137672 GGGTTTA
1 GGGTTTA
115137679 GGGTTTA
1 GGGTTTA
115137686 GGGTTTA
1 GGGTTTA
115137693 GGGTTTA
1 GGGTTTA
115137700 GGGTTTA
1 GGGTTTA
115137707 GGGTTTA
1 GGGTTTA
115137714 GGGTTTA
1 GGGTTTA
115137721 GGGTTTA
1 GGGTTTA
115137728 GGGTTTA
1 GGGTTTA
115137735 GGGTTTA
1 GGGTTTA
115137742 GGGTTTA
1 GGGTTTA
115137749 GGGTTTA
1 GGGTTTA
115137756 GGGTTTA
1 GGGTTTA
115137763 GGGTTTA
1 GGGTTTA
115137770 GGGTTTA
1 GGGTTTA
115137777 GGGTTTA
1 GGGTTTA
115137784 GGGTTTA
1 GGGTTTA
115137791 GGGTTTA
1 GGGTTTA
115137798 GGGTTTA
1 GGGTTTA
115137805 GGGTTTA
1 GGGTTTA
115137812 GGGTTTA
1 GGGTTTA
115137819 GGGTTTA
1 GGGTTTA
115137826 GGGTTTA
1 GGGTTTA
115137833 GGGTTTA
1 GGGTTTA
115137840 GGGTTTA
1 GGGTTTA
115137847 GGGTTTA
1 GGGTTTA
115137854 GGGTTTA
1 GGGTTTA
115137861 GGGTTTTA
1 GGG-TTTA
115137869 GGGTTTA
1 GGGTTTA
115137876 GGGTTTA
1 GGGTTTA
115137883 GGGTTTA
1 GGGTTTA
115137890 GGGTTTA
1 GGGTTTA
115137897 GGGTTTA
1 GGGTTTA
115137904 GGGTTTA
1 GGGTTTA
115137911 GGGTTTA
1 GGGTTTA
115137918 GGGTTTA
1 GGGTTTA
115137925 GGGTTTA
1 GGGTTTA
115137932 GGGTTTA
1 GGGTTTA
115137939 GGGTTTA
1 GGGTTTA
115137946 GGGTTTA
1 GGGTTTA
115137953 GGGTTTA
1 GGGTTTA
115137960 GGGTTTA
1 GGGTTTA
115137967 GGGTTTA
1 GGGTTTA
115137974 GGGTTTA
1 GGGTTTA
115137981 GGGTTTA
1 GGGTTTA
115137988 GGGTTTA
1 GGGTTTA
115137995 GGGTTTA
1 GGGTTTA
115138002 GGGTTTA
1 GGGTTTA
115138009 GGGTTTA
1 GGGTTTA
115138016 GGGTTTA
1 GGGTTTA
115138023 GGGTTTA
1 GGGTTTA
115138030 GGGTTTA
1 GGGTTTA
115138037 GGGTTTA
1 GGGTTTA
115138044 GGGTTTA
1 GGGTTTA
115138051 GGGTTTA
1 GGGTTTA
115138058 GGGTTTA
1 GGGTTTA
115138065 GGGTTTA
1 GGGTTTA
115138072 GGGTTTA
1 GGGTTTA
115138079 GGGTTTA
1 GGGTTTA
115138086 GGGTTTA
1 GGGTTTA
115138093 GGGTTTA
1 GGGTTTA
115138100 GGGTTTA
1 GGGTTTA
115138107 GGGTTTA
1 GGGTTTA
115138114 GGGTTTA
1 GGGTTTA
115138121 GGGTTTA
1 GGGTTTA
115138128 GGGTTTA
1 GGGTTTA
115138135 GGGTTTA
1 GGGTTTA
115138142 GGGTTTA
1 GGGTTTA
115138149 GGGTTTA
1 GGGTTTA
115138156 GGGTTTA
1 GGGTTTA
115138163 GGGTTTA
1 GGGTTTA
115138170 GGGTTTA
1 GGGTTTA
115138177 GGGTTTA
1 GGGTTTA
115138184 GGGTTTA
1 GGGTTTA
115138191 GGGTTTA
1 GGGTTTA
115138198 GGG-TTA
1 GGGTTTA
115138204 GGGTTTA
1 GGGTTTA
115138211 GGGTTTA
1 GGGTTTA
115138218 GGGTTTA
1 GGGTTTA
115138225 GGGTTTA
1 GGGTTTA
115138232 GGGTTTA
1 GGGTTTA
115138239 GGGTTTA
1 GGGTTTA
115138246 GGGTTTA
1 GGGTTTA
115138253 GGGTTTA
1 GGGTTTA
115138260 GGGTTTA
1 GGGTTTA
115138267 GGGTTTA
1 GGGTTTA
115138274 GGGTTTA
1 GGGTTTA
115138281 GGGTTTA
1 GGGTTTA
115138288 GGGTTTA
1 GGGTTTA
115138295 GGGTTTA
1 GGGTTTA
115138302 GGGTTTA
1 GGGTTTA
115138309 GGGTTTA
1 GGGTTTA
115138316 GGGTTTA
1 GGGTTTA
115138323 GGGTTTA
1 GGGTTTA
115138330 GGGTTTA
1 GGGTTTA
115138337 GGGTTTA
1 GGGTTTA
115138344 GGGTTTA
1 GGGTTTA
115138351 GGGTTTA
1 GGGTTTA
115138358 GGGTTTA
1 GGGTTTA
115138365 GGGTTTA
1 GGGTTTA
115138372 GGGTTTA
1 GGGTTTA
115138379 GGGTTTA
1 GGGTTTA
115138386 GGGTTTA
1 GGGTTTA
115138393 GGGTTTA
1 GGGTTTA
115138400 GGGTTTA
1 GGGTTTA
115138407 GGGTTTA
1 GGGTTTA
115138414 GGGTTTA
1 GGGTTTA
115138421 GGGTTTA
1 GGGTTTA
115138428 GGGTTTA
1 GGGTTTA
115138435 GGGTTTA
1 GGGTTTA
115138442 GGGTTTA
1 GGGTTTA
115138449 GGGTTTA
1 GGGTTTA
115138456 GGGTTTA
1 GGGTTTA
115138463 GGGTTTA
1 GGGTTTA
115138470 GGGTTTA
1 GGGTTTA
115138477 GGGTTTA
1 GGGTTTA
115138484 GGGTTTA
1 GGGTTTA
115138491 GGGTTTA
1 GGGTTTA
115138498 GGGTTTA
1 GGGTTTA
115138505 GGGTTTA
1 GGGTTTA
115138512 GGGTTTA
1 GGGTTTA
115138519 GGGTTTA
1 GGGTTTA
115138526 GGGTTTA
1 GGGTTTA
115138533 GGGTTTA
1 GGGTTTA
115138540 GGGTTTA
1 GGGTTTA
115138547 GGGTTTA
1 GGGTTTA
115138554 GGGTTTA
1 GGGTTTA
115138561 GGGTTTA
1 GGGTTTA
115138568 GGGTTTA
1 GGGTTTA
115138575 GGGTTTA
1 GGGTTTA
115138582 GGGTTTA
1 GGGTTTA
115138589 GGGTTTA
1 GGGTTTA
115138596 GGGTTTA
1 GGGTTTA
115138603 GGGTTTA
1 GGGTTTA
115138610 GGGTTTA
1 GGGTTTA
115138617 GGGTTTA
1 GGGTTTA
115138624 GGGTTTA
1 GGGTTTA
115138631 GGGTTTA
1 GGGTTTA
115138638 GGGTTTA
1 GGGTTTA
115138645 GGGTTTA
1 GGGTTTA
115138652 GGGTTTA
1 GGGTTTA
115138659 GGGTTTA
1 GGGTTTA
115138666 GGGTTTA
1 GGGTTTA
115138673 GGGTTTA
1 GGGTTTA
115138680 GGGTTTA
1 GGGTTTA
115138687 GGGTTTA
1 GGGTTTA
115138694 GGGTTTA
1 GGGTTTA
115138701 GGGTTTA
1 GGGTTTA
115138708 GGGTTTA
1 GGGTTTA
115138715 GGGTTTA
1 GGGTTTA
115138722 GGGTTTA
1 GGGTTTA
115138729 GGGTTTA
1 GGGTTTA
115138736 GGGTTTA
1 GGGTTTA
115138743 GGGTTTA
1 GGGTTTA
115138750 GGGTTTA
1 GGGTTTA
115138757 GGGTTTA
1 GGGTTTA
115138764 GGGTTTA
1 GGGTTTA
115138771 GGGTTTA
1 GGGTTTA
115138778 GGGTTTA
1 GGGTTTA
115138785 GGGTTTA
1 GGGTTTA
115138792 GGGTTTA
1 GGGTTTA
115138799 GGGTTTA
1 GGGTTTA
115138806 GGG-TT-
1 GGGTTTA
115138811 GGGTTTA
1 GGGTTTA
115138818 GGGTTTA
1 GGGTTTA
115138825 GGGTTTA
1 GGGTTTA
115138832 GGGTTTA
1 GGGTTTA
115138839 GGGTTTA
1 GGGTTTA
115138846 GGGTTTA
1 GGGTTTA
115138853 GGGTTTA
1 GGGTTTA
115138860 GGGTTTA
1 GGGTTTA
115138867 GGGTTTA
1 GGGTTTA
115138874 GGGTTTA
1 GGGTTTA
115138881 GGGTTTA
1 GGGTTTA
115138888 GGGTTTA
1 GGGTTTA
115138895 GGGTTTA
1 GGGTTTA
115138902 GGGTTTA
1 GGGTTTA
115138909 GGGTTTA
1 GGGTTTA
115138916 GGGTTTA
1 GGGTTTA
115138923 GGGTTTA
1 GGGTTTA
115138930 GGGTTTA
1 GGGTTTA
115138937 GGGTTTA
1 GGGTTTA
115138944 GGGTTTA
1 GGGTTTA
115138951 GGGTTTA
1 GGGTTTA
115138958 GGGTTTA
1 GGGTTTA
115138965 GGGTTTA
1 GGGTTTA
115138972 GGGTTTA
1 GGGTTTA
115138979 -GGTTTA
1 GGGTTTA
115138985 GGGTTTA
1 GGGTTTA
115138992 GGGTTTA
1 GGGTTTA
115138999 GGGTTTA
1 GGGTTTA
115139006 GGGTTTA
1 GGGTTTA
115139013 GGGTTTA
1 GGGTTTA
115139020 GGGTTTA
1 GGGTTTA
115139027 GGGTTTA
1 GGGTTTA
115139034 GGGTTTA
1 GGGTTTA
115139041 GGGTTTA
1 GGGTTTA
115139048 GGGTTTA
1 GGGTTTA
115139055 GGGTTTA
1 GGGTTTA
115139062 GGGTTTA
1 GGGTTTA
115139069 GGGTTTA
1 GGGTTTA
115139076 GGGTTTA
1 GGGTTTA
115139083 GGGTTTTA
1 GGG-TTTA
115139091 GGGTTTA
1 GGGTTTA
115139098 GGGTTTA
1 GGGTTTA
115139105 GGGTTTA
1 GGGTTTA
115139112 GGGTTTA
1 GGGTTTA
115139119 GGGTTTA
1 GGGTTTA
115139126 GGGTTTA
1 GGGTTTA
115139133 GGGTTTA
1 GGGTTTA
115139140 GGGTTTA
1 GGGTTTA
115139147 GGGTTTA
1 GGGTTTA
115139154 GGGTTTA
1 GGGTTTA
115139161 GGGTTTTA
1 GGG-TTTA
115139169 GGGTTTA
1 GGGTTTA
115139176 GGGTTTA
1 GGGTTTA
115139183 GGGTTTA
1 GGGTTTA
115139190 GGGTTTA
1 GGGTTTA
115139197 GGGTTTA
1 GGGTTTA
115139204 GGGTTTA
1 GGGTTTA
115139211 GGGTTTA
1 GGGTTTA
115139218 GGGTTTA
1 GGGTTTA
115139225 GGGTTTA
1 GGGTTTA
115139232 GGGTTTA
1 GGGTTTA
115139239 GGGTTTA
1 GGGTTTA
115139246 GGGTTTA
1 GGGTTTA
115139253 GGGTTTA
1 GGGTTTA
115139260 GGGTTTTA
1 GGG-TTTA
115139268 GGGTTTA
1 GGGTTTA
115139275 GGGTTTA
1 GGGTTTA
115139282 GGGTTTA
1 GGGTTTA
115139289 GGGTTTA
1 GGGTTTA
115139296 GGGTTTA
1 GGGTTTA
115139303 GGGTTTA
1 GGGTTTA
115139310 GGGTTTA
1 GGGTTTA
115139317 GGGTTTA
1 GGGTTTA
115139324 GGGTTTA
1 GGGTTTA
115139331 GGGTTTA
1 GGGTTTA
115139338 GGGTTTA
1 GGGTTTA
115139345 GGGTTTA
1 GGGTTTA
115139352 GGGTTTA
1 GGGTTTA
115139359 GGGTTTA
1 GGGTTTA
115139366 GGGTTTA
1 GGGTTTA
115139373 GGGTTTA
1 GGGTTTA
115139380 GGGTTTA
1 GGGTTTA
115139387 GGGTTTA
1 GGGTTTA
115139394 GGGTTTA
1 GGGTTTA
115139401 GGGTTTA
1 GGGTTTA
115139408 GGGTTTA
1 GGGTTTA
115139415 GGGTTTA
1 GGGTTTA
115139422 GGGTTTA
1 GGGTTTA
115139429 GGGTTTA
1 GGGTTTA
115139436 GGGTTTA
1 GGGTTTA
115139443 -GGTTTA
1 GGGTTTA
115139449 GGGTTTA
1 GGGTTTA
115139456 GGGTTTA
1 GGGTTTA
115139463 GGGTTTA
1 GGGTTTA
115139470 GGGTTTA
1 GGGTTTA
115139477 GGGTTTA
1 GGGTTTA
115139484 GGGTTTA
1 GGGTTTA
115139491 GGGTTTA
1 GGGTTTA
115139498 GGGTTTA
1 GGGTTTA
115139505 GGGTTTA
1 GGGTTTA
115139512 GGGTTTA
1 GGGTTTA
115139519 GGGTTTA
1 GGGTTTA
115139526 GGGTTTA
1 GGGTTTA
115139533 GGGTTTA
1 GGGTTTA
115139540 GGG-TTA
1 GGGTTTA
115139546 GGGTTTA
1 GGGTTTA
115139553 GGGTTTA
1 GGGTTTA
115139560 GGGTTTA
1 GGGTTTA
115139567 GGGTTTA
1 GGGTTTA
115139574 GGGTTTA
1 GGGTTTA
115139581 GGGTTTA
1 GGGTTTA
115139588 GGGTTTA
1 GGGTTTA
115139595 GGGTTTA
1 GGGTTTA
115139602 GGGTTTA
1 GGGTTTA
115139609 GGGTTTA
1 GGGTTTA
115139616 GGGTTTA
1 GGGTTTA
115139623 GGGTTTA
1 GGGTTTA
115139630 GGGTTTA
1 GGGTTTA
115139637 GGGTTTA
1 GGGTTTA
115139644 GGGTTTA
1 GGGTTTA
115139651 GGGTTTA
1 GGGTTTA
115139658 GGGTTTA
1 GGGTTTA
115139665 GGGTTTA
1 GGGTTTA
115139672 GGGTTTA
1 GGGTTTA
115139679 GGGTTTA
1 GGGTTTA
115139686 GGGTTTA
1 GGGTTTA
115139693 GGGTTTA
1 GGGTTTA
115139700 GGGTTTTA
1 GGG-TTTA
115139708 GGGTTTA
1 GGGTTTA
115139715 GGGTTTA
1 GGGTTTA
115139722 GGGTTTA
1 GGGTTTA
115139729 GGGTTTA
1 GGGTTTA
115139736 GGGTTTA
1 GGGTTTA
115139743 GGGTTTTA
1 GGG-TTTA
115139751 -GGTTTA
1 GGGTTTA
115139757 GGG-TTA
1 GGGTTTA
115139763 GGGTTTA
1 GGGTTTA
115139770 GGGTTTA
1 GGGTTTA
115139777 GGGTTTA
1 GGGTTTA
115139784 GGGTTTA
1 GGGTTTA
115139791 GGGTTTA
1 GGGTTTA
115139798 GGGTTTA
1 GGGTTTA
115139805 GGGTTTA
1 GGGTTTA
115139812 GGGTTTA
1 GGGTTTA
115139819 GGGTTTA
1 GGGTTTA
115139826 GGG-TTA
1 GGGTTTA
115139832 GGGTTTA
1 GGGTTTA
115139839 GGGTTTA
1 GGGTTTA
115139846 GGGTTTA
1 GGGTTTA
115139853 GGGTTTA
1 GGGTTTA
115139860 GGGTTTA
1 GGGTTTA
115139867 GGGTTTA
1 GGGTTTA
115139874 GGGTTTA
1 GGGTTTA
115139881 GGGTTTA
1 GGGTTTA
115139888 GGGTTTA
1 GGGTTTA
115139895 GGGTTTA
1 GGGTTTA
115139902 GGGTTTA
1 GGGTTTA
115139909 GGGTTTA
1 GGGTTTA
115139916 GGGTTTA
1 GGGTTTA
115139923 GGGTTTA
1 GGGTTTA
115139930 GGGTTTA
1 GGGTTTA
115139937 -GGTTTA
1 GGGTTTA
115139943 GGGTTTA
1 GGGTTTA
115139950 GGGTTTA
1 GGGTTTA
115139957 GGGTTTA
1 GGGTTTA
115139964 GGG--T-
1 GGGTTTA
115139968 GGGTTTA
1 GGGTTTA
115139975 GGGTTTA
1 GGGTTTA
*
115139982 GGGTTTT
1 GGGTTTA
115139989 GGGTTTA
1 GGGTTTA
115139996 GGGTTTA
1 GGGTTTA
115140003 GGGTTTA
1 GGGTTTA
115140010 GGGTTTA
1 GGGTTTA
*
115140017 GGGTTTTT
1 GGG-TTTA
115140025 GGGTTTA
1 GGGTTTA
115140032 GGGTTTA
1 GGGTTTA
115140039 GGGTTTA
1 GGGTTTA
115140046 GGGTTTA
1 GGGTTTA
115140053 GGGTTTA
1 GGGTTTA
115140060 GGGTTTTA
1 GGG-TTTA
115140068 GGGTTTA
1 GGGTTTA
115140075 GGGTTTA
1 GGGTTTA
115140082 GGGTTTA
1 GGGTTTA
115140089 GGGTTTA
1 GGGTTTA
115140096 GGGTTTA
1 GGGTTTA
115140103 GGGTTTA
1 GGGTTTA
115140110 GGGTTTA
1 GGGTTTA
115140117 GGGTTTA
1 GGGTTTA
115140124 GGG-TTA
1 GGGTTTA
115140130 GGGTTTA
1 GGGTTTA
115140137 GGGTTTA
1 GGGTTTA
115140144 GGGTTTA
1 GGGTTTA
115140151 GGGTTTA
1 GGGTTTA
115140158 GGGTTTA
1 GGGTTTA
115140165 GGGTTTTA
1 GGG-TTTA
115140173 GGGTTTA
1 GGGTTTA
115140180 GGGTTTA
1 GGGTTTA
115140187 GGGTTTA
1 GGGTTTA
115140194 GGG-TTA
1 GGGTTTA
115140200 -GGTTTA
1 GGGTTTA
115140206 GGGTTTA
1 GGGTTTA
115140213 GGGTTTA
1 GGGTTTA
115140220 GGGTTTA
1 GGGTTTA
115140227 GGGTTTA
1 GGGTTTA
115140234 GGGTTTA
1 GGGTTTA
115140241 GGGTTTA
1 GGGTTTA
115140248 GGG
1 GGG
Statistics
Matches: 6310, Mismatches: 34, Indels: 182
0.97 0.01 0.03
Matches are distributed among these distances:
4 3 0.00
5 33 0.01
6 284 0.05
7 5777 0.92
8 190 0.03
9 16 0.00
10 7 0.00
ACGTcount: A:0.14, C:0.00, G:0.43, T:0.43
Consensus pattern (7 bp):
GGGTTTA
Done.