Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A06
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 115140250
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2234201 characters in sequence are not A, C, G, or T
File 35 of 345
Found at i:9962434 original size:14 final size:13
Alignment explanation
Indices: 9962410--9962460 Score: 59
Period size: 14 Copynumber: 3.8 Consensus size: 13
9962400 CTCTCCATTT
9962410 TTTTCTTTTTTCTC
1 TTTT-TTTTTTCTC
9962424 TTTATTTTTTTCTC
1 TTT-TTTTTTTCTC
*
9962438 TTTTTCTTTTCT-
1 TTTTTTTTTTCTC
9962450 TTTTTTCTTTT
1 TTTTTT-TTTT
9962461 TTTTGAAATA
Statistics
Matches: 33, Mismatches: 2, Indels: 5
0.82 0.05 0.12
Matches are distributed among these distances:
12 5 0.15
13 12 0.36
14 15 0.45
15 1 0.03
ACGTcount: A:0.02, C:0.16, G:0.00, T:0.82
Consensus pattern (13 bp):
TTTTTTTTTTCTC
Found at i:9962463 original size:21 final size:22
Alignment explanation
Indices: 9962406--9962463 Score: 84
Period size: 21 Copynumber: 2.7 Consensus size: 22
9962396 TGGCCTCTCC
9962406 ATTTTTTTC-TTTTTTCTCTTT
1 ATTTTTTTCTTTTTTTCTCTTT
*
9962427 ATTTTTTTCTCTTTTTCT-TTT
1 ATTTTTTTCTTTTTTTCTCTTT
*
9962448 CTTTTTTTCTTTTTTT
1 ATTTTTTTCTTTTTTT
9962464 TGAAATAGAA
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
21 26 0.79
22 7 0.21
ACGTcount: A:0.03, C:0.14, G:0.00, T:0.83
Consensus pattern (22 bp):
ATTTTTTTCTTTTTTTCTCTTT
Found at i:9968380 original size:21 final size:20
Alignment explanation
Indices: 9968356--9968405 Score: 55
Period size: 21 Copynumber: 2.4 Consensus size: 20
9968346 TGTAATATAA
9968356 ATAAATAAATATATAAGATAT
1 ATAAATAAA-ATATAAGATAT
* *
9968377 ATAAGTTAAAATATAATATAT
1 ATAA-ATAAAATATAAGATAT
*
9968398 AAAAATAA
1 ATAAATAA
9968406 TTTACAAATT
Statistics
Matches: 24, Mismatches: 4, Indels: 3
0.77 0.13 0.10
Matches are distributed among these distances:
20 3 0.12
21 17 0.71
22 4 0.17
ACGTcount: A:0.64, C:0.00, G:0.04, T:0.32
Consensus pattern (20 bp):
ATAAATAAAATATAAGATAT
Found at i:9968441 original size:12 final size:13
Alignment explanation
Indices: 9968422--9968452 Score: 55
Period size: 12 Copynumber: 2.5 Consensus size: 13
9968412 AATTTTGAAA
9968422 ATATAAATAATAT
1 ATATAAATAATAT
9968435 A-ATAAATAATAT
1 ATATAAATAATAT
9968447 ATATAA
1 ATATAA
9968453 TAAATTAAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
12 12 0.71
13 5 0.29
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (13 bp):
ATATAAATAATAT
Found at i:9968450 original size:16 final size:15
Alignment explanation
Indices: 9968427--9968457 Score: 53
Period size: 16 Copynumber: 2.0 Consensus size: 15
9968417 TGAAAATATA
9968427 AATAATATAATAAAT
1 AATAATATAATAAAT
9968442 AATATATATAATAAAT
1 AATA-ATATAATAAAT
9968458 TAAAAATAAG
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 4 0.27
16 11 0.73
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (15 bp):
AATAATATAATAAAT
Found at i:9968813 original size:17 final size:18
Alignment explanation
Indices: 9968760--9968857 Score: 128
Period size: 18 Copynumber: 5.5 Consensus size: 18
9968750 AATCATATCT
*
9968760 TCTAAGATTGTATATCATA
1 TCTAAGATTG-CTATCATA
*
9968779 TCTAAGATTGCAATCATA
1 TCTAAGATTGCTATCATA
*
9968797 TTTAAGATTG-TATCATA
1 TCTAAGATTGCTATCATA
*
9968814 TCTAAGATTGCAATCATA
1 TCTAAGATTGCTATCATA
*
9968832 TTTAAGATTG-TATCATA
1 TCTAAGATTGCTATCATA
9968849 TCTAAGATT
1 TCTAAGATT
9968858 ACATATCATT
Statistics
Matches: 69, Mismatches: 9, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
17 29 0.42
18 30 0.43
19 10 0.14
ACGTcount: A:0.37, C:0.11, G:0.11, T:0.41
Consensus pattern (18 bp):
TCTAAGATTGCTATCATA
Found at i:9968817 original size:35 final size:35
Alignment explanation
Indices: 9968762--9968866 Score: 174
Period size: 35 Copynumber: 2.9 Consensus size: 35
9968752 TCATATCTTC
9968762 TAAGATTGTATATCATATCTAAGATTGCAATCATATT
1 TAAGATTG--TATCATATCTAAGATTGCAATCATATT
9968799 TAAGATTGTATCATATCTAAGATTGCAATCATATT
1 TAAGATTGTATCATATCTAAGATTGCAATCATATT
*
9968834 TAAGATTGTATCATATCTAAGATTACATATCAT
1 TAAGATTGTATCATATCTAAGATTGCA-ATCAT
9968867 TGAAGACTAT
Statistics
Matches: 66, Mismatches: 1, Indels: 3
0.94 0.01 0.04
Matches are distributed among these distances:
35 53 0.80
36 5 0.08
37 8 0.12
ACGTcount: A:0.38, C:0.11, G:0.10, T:0.40
Consensus pattern (35 bp):
TAAGATTGTATCATATCTAAGATTGCAATCATATT
Found at i:9969946 original size:21 final size:23
Alignment explanation
Indices: 9969920--9969964 Score: 58
Period size: 21 Copynumber: 2.0 Consensus size: 23
9969910 AAAGGATATC
*
9969920 TACAAATTAA-ATC-TCCAAGAT
1 TACAAAATAATATCTTCCAAGAT
*
9969941 TACAAAATAATATCTTCTAAGAT
1 TACAAAATAATATCTTCCAAGAT
9969964 T
1 T
9969965 GTATATCATA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
21 9 0.45
22 3 0.15
23 8 0.40
ACGTcount: A:0.47, C:0.16, G:0.04, T:0.33
Consensus pattern (23 bp):
TACAAAATAATATCTTCCAAGAT
Found at i:9969980 original size:19 final size:19
Alignment explanation
Indices: 9969956--9970063 Score: 163
Period size: 19 Copynumber: 5.9 Consensus size: 19
9969946 AATAATATCT
*
9969956 TCTAAGATTGTATATCATA
1 TCTAAGATTGCATATCATA
9969975 TCTAAGATTGCA-ATCATA
1 TCTAAGATTGCATATCATA
9969993 TCTAAGATTG--TATCATA
1 TCTAAGATTGCATATCATA
9970010 TCTAAGATTG--TATCATA
1 TCTAAGATTGCATATCATA
*
9970027 TCTAAGATTGCATATCACA
1 TCTAAGATTGCATATCATA
9970046 TCTAAGATTGCATATCAT
1 TCTAAGATTGCATATCAT
9970064 TGAGGATTAT
Statistics
Matches: 83, Mismatches: 3, Indels: 6
0.90 0.03 0.07
Matches are distributed among these distances:
17 33 0.40
18 16 0.19
19 34 0.41
ACGTcount: A:0.36, C:0.15, G:0.11, T:0.38
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:9970885 original size:207 final size:207
Alignment explanation
Indices: 9970434--9971763 Score: 2250
Period size: 207 Copynumber: 6.4 Consensus size: 207
9970424 TGATTCTTCA
* * *
9970434 ATTTGTT-TCCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAGCGTAAACACGCGA
1 ATTTGTTCT-CTGACAATACAGAGATGCCAAATCATCTTAGACTTGCTTCAACGTAAACACGTGA
* *
9970498 AAGCCAAATCAGCTATGTCTTCGATTTGCTCCTTGTAAGCACAAGGATACCAAACCATCTTGGAT
65 AAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTTGGAT
* * ** * * * * *
9970563 C-TGCTTCAGTCTAATCATCTGAAGGTTAGATCTGCTATATGTTTGTCTTCCGTCGAATATGGAA
130 CTTGCTTCAGTATAAACATCTGAAGGCCAGATCTGCTATGTGTCTGCCCTCCGTCGAATATGGAG
9970627 ACGCCAAACTTTG
195 ACGCCAAACTTTG
*
9970640 ATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAAACTTGCTTCAACGTAAACACGTGAA
1 ATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGACTTGCTTCAACGTAAACACGTGAA
9970705 AGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTTGGATC
66 AGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTTGGATC
* * * *
9970770 TTGCTTCAGTATAAACATCTGAAGGCCATATCTACTGTGTGTCTGCCCCCCGTCGAATATGGAGA
131 TTGCTTCAGTATAAACATCTGAAGGCCAGATCTGCTATGTGTCTGCCCTCCGTCGAATATGGAGA
9970835 CGCCAAACTTTG
196 CGCCAAACTTTG
*
9970847 ATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGACTTGCTTCAACATAAACACGTGAA
1 ATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGACTTGCTTCAACGTAAACACGTGAA
9970912 AGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTTGGATC
66 AGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTTGGATC
* * *
9970977 TTGCTTCAGTATAAACATCTGAAGGCCATATCTACTGTGTGTCTGCCCTCCGTCGAATATGGAGA
131 TTGCTTCAGTATAAACATCTGAAGGCCAGATCTGCTATGTGTCTGCCCTCCGTCGAATATGGAGA
*
9971042 CGCCAAACTTCG
196 CGCCAAACTTTG
9971054 ATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGACTTGCTTCAACGTAAACACGTGAA
1 ATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGACTTGCTTCAACGTAAACACGTGAA
9971119 AGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTTGGATC
66 AGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTTGGATC
*
9971184 TTGCTTCAGTATAAACATCTGAAGGCCAGATCTGCTATGTGTCTGCCCTCTGTCGAATATGGAGA
131 TTGCTTCAGTATAAACATCTGAAGGCCAGATCTGCTATGTGTCTGCCCTCCGTCGAATATGGAGA
9971249 CGCCAAACTTTG
196 CGCCAAACTTTG
*
9971261 ATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGACTTGCTTCAACGTAAACATGTGAA
1 ATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGACTTGCTTCAACGTAAACACGTGAA
*
9971326 AGCCAAATCAGCTATGTCTTCAATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTTGGATC
66 AGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTTGGATC
* *
9971391 TTGCTCCAGTATAAACATCTGAAGGTCAGATCTGCTATGTGTCTGCCCTCCGTCGAATATGGAGA
131 TTGCTTCAGTATAAACATCTGAAGGCCAGATCTGCTATGTGTCTGCCCTCCGTCGAATATGGAGA
*
9971456 CGCCAAACTTCG
196 CGCCAAACTTTG
9971468 ATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGACTTGCTTCAACGTAAACACGTGAA
1 ATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGACTTGCTTCAACGTAAACACGTGAA
* *
9971533 AGCCAAATCAGCTATGTCTTCGAGTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTTGGATA
66 AGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTTGGATC
* * * *
9971598 TTACTTCAGTATAAACATCTGAAGGCTAGATCTGCTATGTGTCTGCCCTCCGTCTAATATGGGGA
131 TTGCTTCAGTATAAACATCTGAAGGCCAGATCTGCTATGTGTCTGCCCTCCGTCGAATATGGAGA
*
9971663 CGCCAAACATTG
196 CGCCAAACTTTG
* * * * * *
9971675 ATTTGTTCTCTGACAATACAGAGATGCCAAATCATTTTAGATTTTCTTCATCATAAGCACGTGAA
1 ATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGACTTGCTTCAACGTAAACACGTGAA
9971740 AGCCAAATCAGCTATGTCTTCGAT
66 AGCCAAATCAGCTATGTCTTCGAT
9971764 CTGCTCTCCG
Statistics
Matches: 1068, Mismatches: 54, Indels: 3
0.95 0.05 0.00
Matches are distributed among these distances:
206 122 0.11
207 946 0.89
ACGTcount: A:0.29, C:0.23, G:0.18, T:0.30
Consensus pattern (207 bp):
ATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGACTTGCTTCAACGTAAACACGTGAA
AGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTTGGATC
TTGCTTCAGTATAAACATCTGAAGGCCAGATCTGCTATGTGTCTGCCCTCCGTCGAATATGGAGA
CGCCAAACTTTG
Found at i:9972081 original size:43 final size:43
Alignment explanation
Indices: 9971943--9972251 Score: 116
Period size: 43 Copynumber: 7.3 Consensus size: 43
9971933 ATATGCTCCA
* *
9971943 CTACTGCTTAGGGAGACAAGATCCGCAATTTT-GACCTGTTACC
1 CTACTGCTTAGGGAGATAAGATCTGCAATTTTAG-CCTGTTACC
* * * * *
9971986 CTACTGCTTAGGG-GATTAAG-GCGAGCCATCGTT-GATCTGTT-CC
1 CTACTGCTTAGGGAGA-TAAGATC-TGCAAT-TTTAG-CCTGTTACC
* *
9972029 GCTAATGCTTAGGGAGATAAGATCTGTAATTTTAGCCTGTTACC
1 -CTACTGCTTAGGGAGATAAGATCTGCAATTTTAGCCTGTTACC
* * * * * ** *
9972073 CTACTGCTTAGGGGGTTAAG-GC-G-AGTCGTCGTCAATCTGCT-CC
1 CTACTGCTTAGGGAGATAAGATCTGCAAT--T--TTAGCCTGTTACC
* *
9972116 GCTACTGCTTAGGGAGATAAGATCTG-----TGAACCTGTTACC
1 -CTACTGCTTAGGGAGATAAGATCTGCAATTTTAGCCTGTTACC
* * * * * *
9972155 CTACTGCTTAGGG-GATTAAG-GC-G-AGTCTTCGATCTGCT-CC
1 CTACTGCTTAGGGAGA-TAAGATCTGCAATTTTAG-CCTGTTACC
* *
9972195 ACTACTGCTTAGGGAGATAAGATCTGCAAATTTAACCTGTTACC
1 -CTACTGCTTAGGGAGATAAGATCTGCAATTTTAGCCTGTTACC
9972239 CTACTGCTTAGGG
1 CTACTGCTTAGGG
9972252 GATTAAGGCG
Statistics
Matches: 196, Mismatches: 42, Indels: 56
0.67 0.14 0.19
Matches are distributed among these distances:
36 1 0.01
37 3 0.02
38 24 0.12
39 2 0.01
40 5 0.03
41 22 0.11
42 8 0.04
43 66 0.34
44 60 0.31
45 4 0.02
46 1 0.01
ACGTcount: A:0.23, C:0.22, G:0.25, T:0.30
Consensus pattern (43 bp):
CTACTGCTTAGGGAGATAAGATCTGCAATTTTAGCCTGTTACC
Found at i:9972261 original size:84 final size:85
Alignment explanation
Indices: 9971891--9972261 Score: 490
Period size: 87 Copynumber: 4.4 Consensus size: 85
9971881 GCTATACTTC
* *
9971891 AACCTGTTACCCTACTGCTTAGGGGGTTAAGGCGCA-TC-TTCGATATGCTCCACTACTGCTTAG
1 AACCTGTTACCCTACTGCTTAGGGGATTAAGGCG-AGTCGTTCGATCTGCTCCACTACTGCTTAG
* *
9971954 GGAGACAAGATCCGCAATTTT
65 GGAGATAAGATCTGCAATTTT
* * * *
9971975 GACCTGTTACCCTACTGCTTAGGGGATTAAGGCGAGCCATCGTT-GATCTGTTCCGCTAATGCTT
1 AACCTGTTACCCTACTGCTTAGGGGATTAAGGCGAG---TCGTTCGATCTGCTCCACTACTGCTT
*
9972039 AGGGAGATAAGATCTGTAATTTT
63 AGGGAGATAAGATCTGCAATTTT
* * * *
9972062 AGCCTGTTACCCTACTGCTTAGGGGGTTAAGGCGAGTCGTCGTCAATCTGCTCCGCTACTGCTTA
1 AACCTGTTACCCTACTGCTTAGGGGATTAAGGCGAGTCGT--TCGATCTGCTCCACTACTGCTTA
*
9972127 GGGAGATAAGATCTG-----TG
64 GGGAGATAAGATCTGCAATTTT
9972144 AACCTGTTACCCTACTGCTTAGGGGATTAAGGCGAGTC-TTCGATCTGCTCCACTACTGCTTAGG
1 AACCTGTTACCCTACTGCTTAGGGGATTAAGGCGAGTCGTTCGATCTGCTCCACTACTGCTTAGG
*
9972208 GAGATAAGATCTGCAAATTT
66 GAGATAAGATCTGCAATTTT
9972228 AACCTGTTACCCTACTGCTTAGGGGATTAAGGCG
1 AACCTGTTACCCTACTGCTTAGGGGATTAAGGCG
9972262 CTGAATTTTG
Statistics
Matches: 253, Mismatches: 21, Indels: 26
0.84 0.07 0.09
Matches are distributed among these distances:
79 36 0.14
81 1 0.00
82 37 0.15
83 1 0.00
84 71 0.28
86 1 0.00
87 104 0.41
88 2 0.01
ACGTcount: A:0.23, C:0.23, G:0.25, T:0.29
Consensus pattern (85 bp):
AACCTGTTACCCTACTGCTTAGGGGATTAAGGCGAGTCGTTCGATCTGCTCCACTACTGCTTAGG
GAGATAAGATCTGCAATTTT
Found at i:9973173 original size:1 final size:1
Alignment explanation
Indices: 9973163--9973217 Score: 56
Period size: 1 Copynumber: 55.0 Consensus size: 1
9973153 GGCCTCTCCA
* * * * * *
9973163 TTTTTCTTTTTTTCTTTTTTTTTCTTTTCTTTTTTTCTTTTTTTCTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
9973218 GAAATAGAAG
Statistics
Matches: 42, Mismatches: 12, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
1 42 1.00
ACGTcount: A:0.00, C:0.11, G:0.00, T:0.89
Consensus pattern (1 bp):
T
Found at i:9973176 original size:8 final size:8
Alignment explanation
Indices: 9973163--9973214 Score: 88
Period size: 8 Copynumber: 6.6 Consensus size: 8
9973153 GGCCTCTCCA
9973163 TTTTTCTT
1 TTTTTCTT
9973171 TTTTTCTT
1 TTTTTCTT
9973179 TTTTT-TT
1 TTTTTCTT
*
9973186 CTTTTCTT
1 TTTTTCTT
9973194 TTTTTCTT
1 TTTTTCTT
9973202 TTTTTCTT
1 TTTTTCTT
9973210 TTTTT
1 TTTTT
9973215 TTTGAAATAG
Statistics
Matches: 41, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
7 6 0.15
8 35 0.85
ACGTcount: A:0.00, C:0.12, G:0.00, T:0.88
Consensus pattern (8 bp):
TTTTTCTT
Found at i:9973190 original size:23 final size:21
Alignment explanation
Indices: 9973164--9973217 Score: 83
Period size: 23 Copynumber: 2.5 Consensus size: 21
9973154 GCCTCTCCAT
9973164 TTTTCTTTTTTTCTTTTTTTTTC
1 TTTTCTTTTTTTC--TTTTTTTC
9973187 TTTTCTTTTTTTCTTTTTTTC
1 TTTTCTTTTTTTCTTTTTTTC
9973208 TTTT-TTTTTT
1 TTTTCTTTTTT
9973218 GAAATAGAAG
Statistics
Matches: 31, Mismatches: 0, Indels: 3
0.91 0.00 0.09
Matches are distributed among these distances:
20 6 0.19
21 12 0.39
23 13 0.42
ACGTcount: A:0.00, C:0.11, G:0.00, T:0.89
Consensus pattern (21 bp):
TTTTCTTTTTTTCTTTTTTTC
Found at i:9978964 original size:19 final size:19
Alignment explanation
Indices: 9978936--9979026 Score: 127
Period size: 19 Copynumber: 4.9 Consensus size: 19
9978926 AATCATATCT
* *
9978936 TCTAATATTGTATATCATA
1 TCTAAGATTGCATATCATA
9978955 TCTAAGATTGCA-ATCATA
1 TCTAAGATTGCATATCATA
9978973 TCTAAGATTG--TATCATA
1 TCTAAGATTGCATATCATA
9978990 TCTAAGATTGCATATC-TCA
1 TCTAAGATTGCATATCAT-A
9979009 TCTAAGATTGCATATCAT
1 TCTAAGATTGCATATCAT
9979027 TGAAGATTAT
Statistics
Matches: 65, Mismatches: 2, Indels: 9
0.86 0.03 0.12
Matches are distributed among these distances:
17 16 0.25
18 17 0.26
19 31 0.48
20 1 0.02
ACGTcount: A:0.35, C:0.15, G:0.10, T:0.40
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:9978994 original size:35 final size:36
Alignment explanation
Indices: 9978948--9979018 Score: 119
Period size: 35 Copynumber: 2.0 Consensus size: 36
9978938 TAATATTGTA
9978948 TATCATATCTAAGATTGCA-ATCAT-ATCTAAGATTG
1 TATCATATCTAAGATTGCATATC-TCATCTAAGATTG
9978983 TATCATATCTAAGATTGCATATCTCATCTAAGATTG
1 TATCATATCTAAGATTGCATATCTCATCTAAGATTG
9979019 CATATCATTG
Statistics
Matches: 34, Mismatches: 0, Indels: 3
0.92 0.00 0.08
Matches are distributed among these distances:
35 20 0.59
36 14 0.41
ACGTcount: A:0.35, C:0.15, G:0.11, T:0.38
Consensus pattern (36 bp):
TATCATATCTAAGATTGCATATCTCATCTAAGATTG
Found at i:9979033 original size:36 final size:35
Alignment explanation
Indices: 9978948--9979034 Score: 99
Period size: 35 Copynumber: 2.5 Consensus size: 35
9978938 TAATATTGTA
*
9978948 TATCATATCTAAGATTGCAATCATATCTAAGATTG
1 TATCATATCGAAGATTGCAATCATATCTAAGATTG
*
9978983 TATCATATCTAAGATTGCATATC-TCATCTAAGATTG
1 TATCATATCGAAGATTGCA-ATCAT-ATCTAAGATTG
9979019 CATATCAT-T-GAAGATT
1 --TATCATATCGAAGATT
9979035 ATATTTCCAT
Statistics
Matches: 47, Mismatches: 1, Indels: 7
0.85 0.02 0.13
Matches are distributed among these distances:
35 20 0.43
36 20 0.43
37 1 0.02
38 6 0.13
ACGTcount: A:0.36, C:0.15, G:0.11, T:0.38
Consensus pattern (35 bp):
TATCATATCGAAGATTGCAATCATATCTAAGATTG
Found at i:9979034 original size:17 final size:18
Alignment explanation
Indices: 9978954--9979026 Score: 66
Period size: 17 Copynumber: 4.1 Consensus size: 18
9978944 TGTATATCAT
9978954 ATCTAAGATTGCA-A-TC
1 ATCTAAGATTGCATACTC
*
9978970 ATATCTAAGATTGTAT-CAT-
1 --ATCTAAGATTGCATAC-TC
9978989 ATCTAAGATTGCATATCTC
1 ATCTAAGATTGCATA-CTC
9979008 ATCTAAGATTGCATA-TC
1 ATCTAAGATTGCATACTC
9979025 AT
1 AT
9979027 TGAAGATTAT
Statistics
Matches: 47, Mismatches: 2, Indels: 13
0.76 0.03 0.21
Matches are distributed among these distances:
17 17 0.36
18 13 0.28
19 16 0.34
20 1 0.02
ACGTcount: A:0.36, C:0.16, G:0.11, T:0.37
Consensus pattern (18 bp):
ATCTAAGATTGCATACTC
Found at i:9980332 original size:30 final size:30
Alignment explanation
Indices: 9980277--9980333 Score: 78
Period size: 30 Copynumber: 1.9 Consensus size: 30
9980267 ACTAAAATAA
* * *
9980277 GTTGCTCGCACAAGTTGTCAATATATCAGG
1 GTTGCTCACACAAGCTGACAATATATCAGG
*
9980307 GTTGCTCACACAAGCTGACAGTATATC
1 GTTGCTCACACAAGCTGACAATATATC
9980334 GAGCTTACCT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
30 23 1.00
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (30 bp):
GTTGCTCACACAAGCTGACAATATATCAGG
Found at i:9980430 original size:21 final size:21
Alignment explanation
Indices: 9980406--9980452 Score: 85
Period size: 21 Copynumber: 2.2 Consensus size: 21
9980396 GATCTCATAA
9980406 GAACATGTAAAGTCCTTGATC
1 GAACATGTAAAGTCCTTGATC
9980427 GAACATGTAAAGTCCTTGATC
1 GAACATGTAAAGTCCTTGATC
*
9980448 AAACA
1 GAACA
9980453 CGTGTATAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.38, C:0.19, G:0.17, T:0.26
Consensus pattern (21 bp):
GAACATGTAAAGTCCTTGATC
Found at i:9983683 original size:17 final size:17
Alignment explanation
Indices: 9983661--9983706 Score: 65
Period size: 17 Copynumber: 2.7 Consensus size: 17
9983651 GAAAAATGAG
9983661 AATTTTTAAAACACGAA
1 AATTTTTAAAACACGAA
* *
9983678 AATTTTGAAAACACGAG
1 AATTTTTAAAACACGAA
*
9983695 AATTTTTGAAAC
1 AATTTTTAAAAC
9983707 CTGAATTTTT
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
17 25 1.00
ACGTcount: A:0.48, C:0.11, G:0.11, T:0.30
Consensus pattern (17 bp):
AATTTTTAAAACACGAA
Found at i:9985252 original size:30 final size:30
Alignment explanation
Indices: 9985194--9985310 Score: 114
Period size: 30 Copynumber: 3.9 Consensus size: 30
9985184 TGTAATTTTT
* *
9985194 AGAAAATTTA-GGGTTAAAAT-ACAATTTAA
1 AGAAAGTTTAGGGGTCAAAATGA-AATTTAA
* * * *
9985223 TGAAATTTTAGGGGTCTAAGTGAAATTTAA
1 AGAAAGTTTAGGGGTCAAAATGAAATTTAA
*
9985253 AGAAAGTTTAAGGGTCAAAATGAAATTT-A
1 AGAAAGTTTAGGGGTCAAAATGAAATTTAA
* *
9985282 GGAAAAGTTTAGGGGTCAAAATGCAATTT
1 AG-AAAGTTTAGGGGTCAAAATGAAATTT
9985311 TTATTTTTTA
Statistics
Matches: 72, Mismatches: 13, Indels: 5
0.80 0.14 0.06
Matches are distributed among these distances:
29 10 0.14
30 61 0.85
31 1 0.01
ACGTcount: A:0.44, C:0.04, G:0.21, T:0.31
Consensus pattern (30 bp):
AGAAAGTTTAGGGGTCAAAATGAAATTTAA
Found at i:9985758 original size:54 final size:54
Alignment explanation
Indices: 9985580--9985960 Score: 574
Period size: 54 Copynumber: 7.1 Consensus size: 54
9985570 CACGTGAGCC
* *
9985580 AAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTG-AAAACAGAATTTGCAA
1 AAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATT--AA
* * *
9985635 AAGGCTCAACTCACCTCTCGTAATATGAGTTGATTTTTGAAAAA-TG-GA--AA
1 AAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTAA
* *
9985685 AAGGCTCAACTCACCTCTCGCAATATGAGTTGGTTTTTGAAAAACATAAATTAA
1 AAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTAA
*
9985739 AAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAATAGAAATTAA
1 AAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTAA
* *
9985793 AAGGCTCAACTCACCTCTCGCAATATGAGTTGGTTTTTTTGAAAAACAGAAACTAA
1 AAGGCTCAACTCACCTCTCGCAATATGAGTT-G-ATTTTTGAAAAACAGAAATTAA
9985849 AAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTAA
1 AAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTAA
* *
9985903 AAGGCTCAACTCACCTCTCACAATATGAGTTGATTTTTGAAAAATAGAAATTGAA
1 AAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATT-AA
9985958 AAG
1 AAG
9985961 TAGAAATTGA
Statistics
Matches: 298, Mismatches: 20, Indels: 16
0.89 0.06 0.05
Matches are distributed among these distances:
50 44 0.15
52 1 0.00
54 154 0.52
55 45 0.15
56 54 0.18
ACGTcount: A:0.38, C:0.18, G:0.16, T:0.29
Consensus pattern (54 bp):
AAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTAA
Found at i:9985872 original size:110 final size:108
Alignment explanation
Indices: 9985580--9985960 Score: 583
Period size: 110 Copynumber: 3.5 Consensus size: 108
9985570 CACGTGAGCC
* *
9985580 AAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTG-AAAACAGAATTTGCAAAAGGCTCAA
1 AAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATT--AAAAGGCTCAA
* *
9985644 CTCACCTCTCGTAATATGAGTTGATTTTTGAAAAAT-G-GA--AA
64 CTCACCTCTCGCAATATGAGTTGATTTTTGAAAAATAGAAATTAA
* *
9985685 AAGGCTCAACTCACCTCTCGCAATATGAGTTGGTTTTTGAAAAACATAAATTAAAAGGCTCAACT
1 AAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTAAAAGGCTCAACT
9985750 CACCTCTCGCAATATGAGTTGATTTTTGAAAAATAGAAATTAA
66 CACCTCTCGCAATATGAGTTGATTTTTGAAAAATAGAAATTAA
* *
9985793 AAGGCTCAACTCACCTCTCGCAATATGAGTTGGTTTTTTTGAAAAACAGAAACTAAAAGGCTCAA
1 AAGGCTCAACTCACCTCTCGCAATATGAGTT-G-ATTTTTGAAAAACAGAAATTAAAAGGCTCAA
*
9985858 CTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTAA
64 CTCACCTCTCGCAATATGAGTTGATTTTTGAAAAATAGAAATTAA
* *
9985903 AAGGCTCAACTCACCTCTCACAATATGAGTTGATTTTTGAAAAATAGAAATTGAAAAG
1 AAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATT-AAAAG
9985961 TAGAAATTGA
Statistics
Matches: 254, Mismatches: 14, Indels: 12
0.91 0.05 0.04
Matches are distributed among these distances:
104 46 0.18
105 38 0.15
106 11 0.04
108 50 0.20
109 7 0.03
110 102 0.40
ACGTcount: A:0.38, C:0.18, G:0.16, T:0.29
Consensus pattern (108 bp):
AAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTAAAAGGCTCAACT
CACCTCTCGCAATATGAGTTGATTTTTGAAAAATAGAAATTAA
Found at i:9985894 original size:164 final size:159
Alignment explanation
Indices: 9985580--9985960 Score: 595
Period size: 164 Copynumber: 2.4 Consensus size: 159
9985570 CACGTGAGCC
* * *
9985580 AAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTG-AAAACAGAATTTGCAAAAGGCTCAA
1 AAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAATAGAAATTG-AAAAGGCTCAA
* * *
9985644 CTCACCTCTCGTAATATGAGTTGATTTTTGAAAAATGGAAAAAGGCTCAACTCACCTCTCGCAAT
65 CTCACCTCTCGCAATATGAGTTGATTTTTGAAAAAAGAAAAAAGGCTCAACTCACCTCTCGCAAT
* *
9985709 ATGAGTTGGTTTTTGAAAAACATAAATTAA
130 ATGAGTTGATTTTTGAAAAACAGAAATTAA
9985739 AAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAATAGAAATT-AAAAGGCTCAAC
1 AAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAATAGAAATTGAAAAGGCTCAAC
*
9985803 TCACCTCTCGCAATATGAGTTGGTTTTTTTGAAAAACAGAAACTAAAAGGCTCAACTCACCTCTC
66 TCACCTCTCGCAATATGAGTT-G-ATTTTTGAAAAA-AG-AA--AAAAGGCTCAACTCACCTCTC
9985868 GCAATATGAGTTGATTTTTGAAAAACAGAAATTAA
125 GCAATATGAGTTGATTTTTGAAAAACAGAAATTAA
*
9985903 AAGGCTCAACTCACCTCTCACAATATGAGTTGATTTTTGAAAAATAGAAATTGAAAAG
1 AAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAATAGAAATTGAAAAG
9985961 TAGAAATTGA
Statistics
Matches: 204, Mismatches: 10, Indels: 10
0.91 0.04 0.04
Matches are distributed among these distances:
158 32 0.16
159 39 0.19
160 21 0.10
161 1 0.00
162 1 0.00
164 105 0.51
165 5 0.02
ACGTcount: A:0.38, C:0.18, G:0.16, T:0.29
Consensus pattern (159 bp):
AAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAATAGAAATTGAAAAGGCTCAAC
TCACCTCTCGCAATATGAGTTGATTTTTGAAAAAAGAAAAAAGGCTCAACTCACCTCTCGCAATA
TGAGTTGATTTTTGAAAAACAGAAATTAA
Found at i:9985958 original size:14 final size:14
Alignment explanation
Indices: 9985939--9985973 Score: 61
Period size: 14 Copynumber: 2.5 Consensus size: 14
9985929 GAGTTGATTT
9985939 TTGAAAAATAGAAA
1 TTGAAAAATAGAAA
*
9985953 TTGAAAAGTAGAAA
1 TTGAAAAATAGAAA
9985967 TTGAAAA
1 TTGAAAA
9985974 TACCTCAGCG
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.60, C:0.00, G:0.17, T:0.23
Consensus pattern (14 bp):
TTGAAAAATAGAAA
Found at i:9986200 original size:85 final size:85
Alignment explanation
Indices: 9985904--9986205 Score: 340
Period size: 87 Copynumber: 3.4 Consensus size: 85
9985894 AGAAATTAAA
* * *
9985904 AGGCTCAACTCACCTCTCACAATATGAGTTGATTTTTGAAAAATAGAAATT-GAAAAGTAGAAAT
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTG-AAAACAGAAATTAGAAAAGCAGAAAT
*
9985968 TGAAAATACCTCAGCGTACCCTG
64 TGAAAATACCTCAGCGT-GCCTG
* * * *
9985991 AGGCTCAACTCACCTCTTGCAATATGAGCTGATTTTTTTTTGAAACACAGAAATTAAAAAAACAG
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGA-----TTTTGAAA-ACAGAAATTAGAAAAGCAG
* * *
9986056 AATTTGAAAAGACCTCAGCGTGTGGCCCG
60 AAATTGAAAATACCTCAGC--GT-GCCTG
* *
9986085 AGACTCAACTCACCTCTCGCAATATGAGTTGA-TTTGAAAAGCAG-AATTAGTAAAGCAGAAATT
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGAAAA-CAGAAATTAGAAAAGCAGAAATT
9986148 GAAAATACCTCAGCGTGCCTTG
65 GAAAATACCTCAGCGTGCC-TG
9986170 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
9986206 TTGATGATAA
Statistics
Matches: 182, Mismatches: 22, Indels: 23
0.80 0.10 0.10
Matches are distributed among these distances:
84 3 0.02
85 34 0.19
86 3 0.02
87 58 0.32
88 10 0.05
90 3 0.02
91 14 0.08
92 23 0.13
94 34 0.19
ACGTcount: A:0.35, C:0.20, G:0.18, T:0.27
Consensus pattern (85 bp):
AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGAAAACAGAAATTAGAAAAGCAGAAATTG
AAAATACCTCAGCGTGCCTG
Found at i:9986259 original size:71 final size:73
Alignment explanation
Indices: 9986143--9986281 Score: 210
Period size: 71 Copynumber: 1.9 Consensus size: 73
9986133 AGTAAAGCAG
*
9986143 AAATTGAAAATACCTCAGCGTGCCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTT
1 AAATTGAAAATACCTCAGCGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTT
**
9986207 TG-ATGAT
66 TGAAAAAT
** *
9986214 AAATTGAAAATACCTCAATGTGACTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTT
1 AAATTGAAAATACCTCAGCGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTT
9986279 TGA
66 TGA
9986282 TTTTTTTTGA
Statistics
Matches: 63, Mismatches: 3, Indels: 2
0.93 0.04 0.03
Matches are distributed among these distances:
71 56 0.89
72 7 0.11
ACGTcount: A:0.29, C:0.20, G:0.17, T:0.33
Consensus pattern (73 bp):
AAATTGAAAATACCTCAGCGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTT
TGAAAAAT
Found at i:9986292 original size:71 final size:71
Alignment explanation
Indices: 9986143--9986728 Score: 334
Period size: 72 Copynumber: 7.9 Consensus size: 71
9986133 AGTAAAGCAG
* *
9986143 AAATTGAAAATACCTCAGCGTGCCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTT
1 AAATTGAAAATACCTCAACGTGACTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTT
9986208 GATGAT
66 GATGAT
*
9986214 AAATTGAAAATACCTCAATGTGACTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTT
1 AAATTGAAAATACCTCAACGTGACTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTT
*
9986279 TGAT-TT
65 TGATGAT
*** * ** * ** * * * * * * * *
9986285 TTTTTGAAAGGCAGAAATTGAAAAT-ACCTCAATGTGTCTTGAGGCTTAACTCAC-C--TCTCGC
1 AAATTGAAA---A-TACCTCAACGTGA-CT---TGAGGC-TCA-ACTCACCTCTCGCAATAT-G-
* **
9986346 AATATGAGTTGATTTTGAAAAAT
54 AGT-TGA-TT--TTTTG-ATGAT
* * *
9986369 AAATTGAAAATACCTCAGCGTGCCCTGAGG-----CTCACCTCTCGCAATATGAGTTGATTTTTT
1 AAATTGAAAATACCTCAACGTGACTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTT
** *
9986429 TGAAAAACAG
65 TG---ATGAT
*
9986439 AAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTT
1 AAATTGAAAATACCTCAACGTGACTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTT
** *
9986503 GACAAAAA
66 G--ATGAT
* * *
9986511 AAATTGAAATTACCTCAGCGTG-TTCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
1 AAATTGAAAATACCTCAACGTGACT-TGAGGCTCAACTCACCTCTCGCAATATGAGTTGA---TT
*
9986575 TTTTGAAAGAT
62 TTTTG-ATGAT
* *
9986586 AGAAATTGAAAATACCTCAGCGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
1 --AAATTGAAAATACCTCAACGTGACTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA--TT
** *
9986651 TTTTGAAAAACAG
62 TTTTG---ATGAT
* * *
9986664 AAATT-AAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
1 AAATTGAAAA-TACCTCAACGTGACTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
9986728 T
65 T
9986729 TTCAAAAACA
Statistics
Matches: 411, Mismatches: 64, Indels: 77
0.74 0.12 0.14
Matches are distributed among these distances:
68 5 0.01
70 43 0.10
71 67 0.16
72 68 0.17
73 8 0.02
74 8 0.02
75 38 0.09
76 68 0.17
77 60 0.15
78 10 0.02
79 5 0.01
80 17 0.04
81 1 0.00
82 5 0.01
83 1 0.00
84 7 0.02
ACGTcount: A:0.31, C:0.20, G:0.17, T:0.33
Consensus pattern (71 bp):
AAATTGAAAATACCTCAACGTGACTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTT
GATGAT
Found at i:9986554 original size:212 final size:216
Alignment explanation
Indices: 9986299--9987033 Score: 850
Period size: 212 Copynumber: 3.4 Consensus size: 216
9986289 TGAAAGGCAG
** * *
9986299 AAATTGAAAATACCTCAATGTGTCTTGAGGCTTAACTCACCTCTCGCAATATGAGTTGA-TTTTG
1 AAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTG
* * *
9986363 AAAA-ATAAATTGAAAATACCTCAGCGTGCCCTGAGG-CTCACCTCTCGCAATATGAGTTGA-TT
66 AAAACAGAAATTGAAAATACCTCAGCGTGTCTTGAGGACTCACCTCTCGCAATATGAGTTGATTT
9986425 TTTTTGAAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATA
131 TTTTTGAAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATA
9986490 TGAGTTGATTTTTGACAAAAA
196 TGAGTTGATTTTTGACAAAAA
* *
9986511 AAATTGAAATTACCTCAGCGTGTTCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTT
1 AAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA----TT
*
9986576 TTTGAAAGATAGAAATTGAAAATACCTCAGCGTGTCTTGAGGCTCAACTCACCTCTCGCAATATG
62 TTTGAAA-ACAGAAATTGAAAATACCTCAGCGTGTCTTGAGG----ACTCACCTCTCGCAATATG
* *
9986641 AGTTGATTTTTTTTGAAAAACAGAAATT-AAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACC
122 AGTTGATTTTTTTTGAAAAACAGAAATTGAAAA-TACCTCAACGTGTCTTGAGGCTCAACTCACC
**
9986705 TCTCGCAATATGAGTTGATTTTTTTTCAAAAACA
186 TCTCGCAATATGAGTTGA-TTTTTGAC-AAAA-A
9986739 GAAATT-AAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGC---A--A--TG-----
1 -AAATTGAAAA-TACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
* *
9986791 TG--ACCAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGT
64 TGAAAACAGAAATTGAAAATACCTCAGCGTGTCTTGAGG----ACTCACCTCTCGCAATATGAGT
* * *
9986854 TGATTTTTGAAAAATAAATTGACAAACGGAAATTGAAAATACCTC-A-GCGTCTTGAGGCTCAAC
125 TGATTTTT------T---TTGAAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAAC
*
9986917 TCACCTCTCGCAATATGAGTTGATTTTTGA-AAAAT
181 TCACCTCTCGCAATATGAGTTGATTTTTGACAAAAA
* *
9986952 AAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTTGCAATATGAGTTGATTTTTG
1 AAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTG
9987017 ACAAACAGAAATTGAAA
66 A-AAACAGAAATTGAAA
9987034 CATCAAAATA
Statistics
Matches: 449, Mismatches: 29, Indels: 75
0.81 0.05 0.14
Matches are distributed among these distances:
210 65 0.14
211 1 0.00
212 93 0.21
213 6 0.01
214 4 0.01
215 1 0.00
216 6 0.01
217 47 0.10
218 1 0.00
219 51 0.11
220 4 0.01
222 2 0.00
224 31 0.07
225 68 0.15
226 7 0.02
227 17 0.04
228 4 0.01
229 41 0.09
ACGTcount: A:0.33, C:0.21, G:0.17, T:0.30
Consensus pattern (216 bp):
AAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTG
AAAACAGAAATTGAAAATACCTCAGCGTGTCTTGAGGACTCACCTCTCGCAATATGAGTTGATTT
TTTTTGAAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATA
TGAGTTGATTTTTGACAAAAA
Found at i:9986697 original size:76 final size:76
Alignment explanation
Indices: 9986278--9986789 Score: 711
Period size: 76 Copynumber: 6.9 Consensus size: 76
9986268 GTTGATTTTT
** ** * *
9986278 TTGATTTTTTTTGAAAGGCAGAAATTGAAAATACCTCAATGTGTCTTGAGGCTTAACTCACCTCT
1 TTGATTTTTTTTGAAAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCT
9986343 CGCAATATGAG
66 CGCAATATGAG
* *
9986354 TTGA----TTTTG-AAAA-ATAAATTGAAAATACCTCAGCGTGCCCTGAGG-----CTCACCTCT
1 TTGATTTTTTTTGAAAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCT
9986408 CGCAATATGAG
66 CGCAATATGAG
* *
9986419 TTGA-TTTTTTTGAAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCT
1 TTGATTTTTTTTGAAAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCT
9986483 CGCAATATGAG
66 CGCAATATGAG
* *
9986494 TTGA---TTTTTGACAAAA-A-AAATTGAAATTACCTCAGCGTGTTCTGAGGCTCAACTCACCTC
1 TTGATTTTTTTTGA-AAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTC
9986554 TCGCAATATGAG
65 TCGCAATATGAG
* * *
9986566 TTGATTTTTTTTTGAAAGATAGAAATTGAAAATACCTCAGCGTGTCTTGAGGCTCAACTCACCTC
1 TTGA-TTTTTTTTGAAAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTC
9986631 TCGCAATATGAG
65 TCGCAATATGAG
9986643 TTGATTTTTTTTGAAAAACAGAAATT-AAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTC
1 TTGATTTTTTTTGAAAAACAGAAATTGAAAA-TACCTCAGCGTGTCCTGAGGCTCAACTCACCTC
9986707 TCGCAATATGAG
65 TCGCAATATGAG
*
9986719 TTGATTTTTTTTCAAAAACAGAAATT-AAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTC
1 TTGATTTTTTTTGAAAAACAGAAATTGAAAA-TACCTCAGCGTGTCCTGAGGCTCAACTCACCTC
9986783 TCGCAAT
65 TCGCAAT
9986790 GTGACCAGAA
Statistics
Matches: 395, Mismatches: 23, Indels: 36
0.87 0.05 0.08
Matches are distributed among these distances:
65 24 0.06
68 5 0.01
69 4 0.01
70 55 0.14
71 2 0.01
72 60 0.15
73 8 0.02
74 4 0.01
75 31 0.08
76 146 0.37
77 56 0.14
ACGTcount: A:0.31, C:0.20, G:0.17, T:0.32
Consensus pattern (76 bp):
TTGATTTTTTTTGAAAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCT
CGCAATATGAG
Found at i:9986827 original size:58 final size:58
Alignment explanation
Indices: 9986737--9986847 Score: 188
Period size: 58 Copynumber: 1.9 Consensus size: 58
9986727 TTTTCAAAAA
*
9986737 CAGAAATTAAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATGTGAC
1 CAGAAATTAAAATTACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCGCAATGTGAC
*
9986795 CAGAAATTGAAAA-TACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAAT
1 CAGAAATT-AAAATTACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCGCAAT
9986848 ATGAGTTGAT
Statistics
Matches: 50, Mismatches: 2, Indels: 2
0.93 0.04 0.04
Matches are distributed among these distances:
58 46 0.92
59 4 0.08
ACGTcount: A:0.31, C:0.29, G:0.16, T:0.24
Consensus pattern (58 bp):
CAGAAATTAAAATTACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCGCAATGTGAC
Found at i:9986827 original size:210 final size:205
Alignment explanation
Indices: 9986586--9987001 Score: 588
Period size: 210 Copynumber: 2.0 Consensus size: 205
9986576 TTTGAAAGAT
*
9986586 AGAAATTGAAAATACCTCAGCGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
1 AGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
9986651 T-T-TTGAAAAACAGAAATT-AAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAA
66 TATATTGAAAAACAGAAATTGAAAA-TACCTCAGC--GTCCTGAGGCTCAACTCACCTCTCGCAA
*
9986713 TATGAGTTGATTTTTTTTCAAAAACAGAAATT-AAAATTACCTCAGCGTGTCCTGAGGCTCAACT
128 TATGAGTTGA---TTTTT-AAAAA-AGAAATTGAAAA-TACCTCAGCGTGCCCTGAGGCTCAACT
9986777 CACCTCTCGCAATGTGACC
187 CACCTCTCGCAATGTGACC
9986796 AGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
1 AGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
* * *
9986861 TGAAAAATAAATTGACAAACGGAAATTGAAAATACCTCAGCGTCTTGAGGCTCAACTCACCTCTC
66 T-----AT--ATTGAAAAACAGAAATTGAAAATACCTCAGCGTCCTGAGGCTCAACTCACCTCTC
* *
9986926 GCAATATGAGTTGATTTTTGAAAAATAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCA
124 GCAATATGAGTTGATTTTTAAAAAAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCA
*
9986991 CCTCTTGCAAT
189 CCTCTCGCAAT
9987002 ATGAGTTGAT
Statistics
Matches: 187, Mismatches: 8, Indels: 20
0.87 0.04 0.09
Matches are distributed among these distances:
210 65 0.35
212 44 0.24
213 8 0.04
214 5 0.03
216 1 0.01
217 37 0.20
219 23 0.12
220 4 0.02
ACGTcount: A:0.32, C:0.23, G:0.16, T:0.29
Consensus pattern (205 bp):
AGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
TATATTGAAAAACAGAAATTGAAAATACCTCAGCGTCCTGAGGCTCAACTCACCTCTCGCAATAT
GAGTTGATTTTTAAAAAAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCG
CAATGTGACC
Found at i:9986924 original size:83 final size:85
Alignment explanation
Indices: 9986797--9986958 Score: 301
Period size: 83 Copynumber: 1.9 Consensus size: 85
9986787 AATGTGACCA
*
9986797 GAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
1 GAAATTGAAAATACCTCAACGCGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
9986862 GAAAAATAAATTGACAAACG
66 GAAAAATAAATTGACAAACG
9986882 GAAATTGAAAATACCTC-A-GCGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
1 GAAATTGAAAATACCTCAACGCGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
9986945 GAAAAATAAATTGA
66 GAAAAATAAATTGA
9986959 AAATACCTCA
Statistics
Matches: 76, Mismatches: 1, Indels: 2
0.96 0.01 0.03
Matches are distributed among these distances:
83 58 0.76
84 1 0.01
85 17 0.22
ACGTcount: A:0.36, C:0.19, G:0.17, T:0.29
Consensus pattern (85 bp):
GAAATTGAAAATACCTCAACGCGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
GAAAAATAAATTGACAAACG
Found at i:9987001 original size:71 final size:71
Alignment explanation
Indices: 9986872--9987033 Score: 256
Period size: 71 Copynumber: 2.3 Consensus size: 71
9986862 GAAAAATAAA
* *
9986872 TTGACAAACGGAAATTGAAAATACCTCAGCGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGT
1 TTGACAAACAGAAATTGAAAATACCTCAGCGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGT
9986937 TGATTT
66 TGATTT
* *
9986943 TTGA-AAA-ATAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTTGCAATATGA
1 TTGACAAACAGAAATTGAAAATACCTCAGCGT--CCTGAGGCTCAACTCACCTCTCGCAATATGA
9987006 GTTGATTT
64 GTTGATTT
9987014 TTGACAAACAGAAATTGAAA
1 TTGACAAACAGAAATTGAAA
9987034 CATCAAAATA
Statistics
Matches: 82, Mismatches: 5, Indels: 6
0.88 0.05 0.06
Matches are distributed among these distances:
69 21 0.26
70 3 0.04
71 45 0.55
72 3 0.04
73 10 0.12
ACGTcount: A:0.35, C:0.20, G:0.17, T:0.28
Consensus pattern (71 bp):
TTGACAAACAGAAATTGAAAATACCTCAGCGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGT
TGATTT
Found at i:9988633 original size:14 final size:15
Alignment explanation
Indices: 9988616--9988647 Score: 57
Period size: 14 Copynumber: 2.2 Consensus size: 15
9988606 TCCATTTTAT
9988616 TTTCTTTCTTTTT-C
1 TTTCTTTCTTTTTGC
9988630 TTTCTTTCTTTTTGC
1 TTTCTTTCTTTTTGC
9988645 TTT
1 TTT
9988648 TGAATGAATG
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 13 0.76
15 4 0.24
ACGTcount: A:0.00, C:0.19, G:0.03, T:0.78
Consensus pattern (15 bp):
TTTCTTTCTTTTTGC
Found at i:9992916 original size:18 final size:18
Alignment explanation
Indices: 9992874--9992965 Score: 84
Period size: 17 Copynumber: 5.1 Consensus size: 18
9992864 GAAAAATGAG
9992874 AATTTTT-AAAACACGAA
1 AATTTTTGAAAACACGAA
9992891 AA-TTTTGAAAACACGAA
1 AATTTTTGAAAACACGAA
9992908 AATTTTTG-AAAC-CTGAA
1 AATTTTTGAAAACAC-GAA
**
9992925 TTTTTTTTAGAAAAACACGAA
1 -AATTTTT-G-AAAACACGAA
* *
9992946 AAATTTTGGAAACACGAA
1 AATTTTTGAAAACACGAA
9992964 AA
1 AA
9992966 GATTACAACA
Statistics
Matches: 61, Mismatches: 6, Indels: 15
0.74 0.07 0.18
Matches are distributed among these distances:
16 5 0.08
17 21 0.34
18 21 0.34
19 2 0.03
20 4 0.07
21 7 0.11
22 1 0.02
ACGTcount: A:0.49, C:0.11, G:0.11, T:0.29
Consensus pattern (18 bp):
AATTTTTGAAAACACGAA
Found at i:9994455 original size:29 final size:29
Alignment explanation
Indices: 9994416--9994531 Score: 117
Period size: 30 Copynumber: 4.0 Consensus size: 29
9994406 TGTATTTTTT
* *
9994416 AGAAAATTTA-GGGTTAAAATGTAATTTA
1 AGAAAGTTTAGGGGTTAAAATGAAATTTA
* *
9994444 ATGAAAGTTTAGGGGTTTAAGTGAAATTTA
1 A-GAAAGTTTAGGGGTTAAAATGAAATTTA
* * *
9994474 AAAAAGTTTAAGGGTAAAAATGAAATTTA
1 AGAAAGTTTAGGGGTTAAAATGAAATTTA
* * *
9994503 GGAAAAGTTTAGGGGTCAAAATGTAATTT
1 AG-AAAGTTTAGGGGTTAAAATGAAATTT
9994532 TTATTTTTTA
Statistics
Matches: 71, Mismatches: 14, Indels: 4
0.80 0.16 0.04
Matches are distributed among these distances:
28 1 0.01
29 31 0.44
30 39 0.55
ACGTcount: A:0.44, C:0.01, G:0.22, T:0.33
Consensus pattern (29 bp):
AGAAAGTTTAGGGGTTAAAATGAAATTTA
Found at i:10002054 original size:23 final size:21
Alignment explanation
Indices: 10002032--10002077 Score: 76
Period size: 20 Copynumber: 2.2 Consensus size: 21
10002022 ATAATGAAAT
10002032 TATATTTTAGCTCTCATCAAA
1 TATATTTTAGCTCTCATCAAA
10002053 -ATATTTTAGCTCTCATCAAA
1 TATATTTTAGCTCTCATCAAA
*
10002073 AATAT
1 TATAT
10002078 ATAATTTAAT
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
20 20 0.83
21 4 0.17
ACGTcount: A:0.37, C:0.17, G:0.04, T:0.41
Consensus pattern (21 bp):
TATATTTTAGCTCTCATCAAA
Found at i:10002077 original size:21 final size:20
Alignment explanation
Indices: 10002033--10002073 Score: 82
Period size: 20 Copynumber: 2.0 Consensus size: 20
10002023 TAATGAAATT
10002033 ATATTTTAGCTCTCATCAAA
1 ATATTTTAGCTCTCATCAAA
10002053 ATATTTTAGCTCTCATCAAA
1 ATATTTTAGCTCTCATCAAA
10002073 A
1 A
10002074 ATATATAATT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.37, C:0.20, G:0.05, T:0.39
Consensus pattern (20 bp):
ATATTTTAGCTCTCATCAAA
Found at i:10002902 original size:26 final size:26
Alignment explanation
Indices: 10002873--10002936 Score: 119
Period size: 26 Copynumber: 2.5 Consensus size: 26
10002863 TGATACAAAT
10002873 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
10002899 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTCCA
10002925 TGATAATGGGTT
1 TGATAATGGGTT
10002937 TCATGTCTTT
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 37 1.00
ACGTcount: A:0.30, C:0.05, G:0.28, T:0.38
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:10010419 original size:15 final size:15
Alignment explanation
Indices: 10010399--10010431 Score: 57
Period size: 15 Copynumber: 2.2 Consensus size: 15
10010389 GTGATATCAG
10010399 TTTCTAAAAAAGTAA
1 TTTCTAAAAAAGTAA
*
10010414 TTTCTAAAGAAGTAA
1 TTTCTAAAAAAGTAA
10010429 TTT
1 TTT
10010432 TAGGAAAACC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.45, C:0.06, G:0.09, T:0.39
Consensus pattern (15 bp):
TTTCTAAAAAAGTAA
Found at i:10015693 original size:15 final size:15
Alignment explanation
Indices: 10015673--10015702 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
10015663 AAATTTTAAT
10015673 TTTTTATAATTTGTA
1 TTTTTATAATTTGTA
10015688 TTTTTATAATTTGTA
1 TTTTTATAATTTGTA
10015703 AAGAATTAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.27, C:0.00, G:0.07, T:0.67
Consensus pattern (15 bp):
TTTTTATAATTTGTA
Found at i:10016286 original size:16 final size:16
Alignment explanation
Indices: 10016265--10016316 Score: 95
Period size: 16 Copynumber: 3.2 Consensus size: 16
10016255 TTTGGTTCGC
10016265 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
*
10016281 TGTATTGGATTAAAGG
1 TGTATTGGATTAGAGG
10016297 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
10016313 TGTA
1 TGTA
10016317 ATAGCAAATC
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 34 1.00
ACGTcount: A:0.27, C:0.00, G:0.35, T:0.38
Consensus pattern (16 bp):
TGTATTGGATTAGAGG
Found at i:10016569 original size:16 final size:16
Alignment explanation
Indices: 10016541--10016586 Score: 51
Period size: 15 Copynumber: 2.9 Consensus size: 16
10016531 TTTAAGCATA
*
10016541 ATTTTTATT-AAATAT
1 ATTTTAATTAAAATAT
10016556 ATTTTAATTAAAATAT
1 ATTTTAATTAAAATAT
10016572 ATAATTTAA-TAAAAT
1 AT--TTTAATTAAAAT
10016587 TCTTAATAAT
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
15 8 0.30
16 8 0.30
17 6 0.22
18 5 0.19
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (16 bp):
ATTTTAATTAAAATAT
Found at i:10016579 original size:18 final size:17
Alignment explanation
Indices: 10016552--10016586 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
10016542 TTTTTATTAA
*
10016552 ATATATTTTAATTAAAAT
1 ATATAATTTAA-TAAAAT
10016570 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
10016587 TCTTAATAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (17 bp):
ATATAATTTAATAAAAT
Found at i:10016699 original size:18 final size:17
Alignment explanation
Indices: 10016672--10016706 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
10016662 TTACTATTAA
*
10016672 ATATATTTTAATTAAAAT
1 ATATAATTTAA-TAAAAT
10016690 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
10016707 TCTTAATATT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (17 bp):
ATATAATTTAATAAAAT
Found at i:10016752 original size:61 final size:60
Alignment explanation
Indices: 10016567--10016757 Score: 155
Period size: 61 Copynumber: 3.2 Consensus size: 60
10016557 TTTTAATTAA
* *
10016567 AATATATAATTTAATAAAATTCTTAATAATT-AATATTCTTATATTAATTTACTGAAATCAT
1 AATATATAATTTAATAAAATTCTTAAT-ATTAAATATTCTTATATAAATTTTCT-AAATCAT
* * * * * *
10016628 AATATATGATACT-GTAAAA-T-ATAA-ATTAACATAATTAC-TAT-TAAATATATT-TTAATTA
1 AATATATAAT-TTAATAAAATTCTTAATATTAA-AT-ATT-CTTATATAAAT-T-TTCTAAATCA
*
10016686 A
60 T
*
10016687 AATATATAATTTAATAAAATTCTTAATATTAAATATTCTTATATGAATTTTCTAAAATCAT
1 AATATATAATTTAATAAAATTCTTAATATTAAATATTCTTATATAAATTTTCT-AAATCAT
10016748 AATATATAAT
1 AATATATAAT
10016758 ACTATGAAAT
Statistics
Matches: 98, Mismatches: 17, Indels: 30
0.68 0.12 0.21
Matches are distributed among these distances:
57 3 0.03
58 2 0.02
59 30 0.31
60 18 0.18
61 39 0.40
62 6 0.06
ACGTcount: A:0.48, C:0.06, G:0.02, T:0.44
Consensus pattern (60 bp):
AATATATAATTTAATAAAATTCTTAATATTAAATATTCTTATATAAATTTTCTAAATCAT
Found at i:10016835 original size:120 final size:120
Alignment explanation
Indices: 10016530--10016813 Score: 446
Period size: 120 Copynumber: 2.4 Consensus size: 120
10016520 ATTTAATCAT
*
10016530 ATTTAAGCATAATTTTTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATA
1 ATTTAA-CATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAAT-
* * * *
10016595 ATT-AATATTCTTATATTAATTTACTGAAATCATAATATATGATACTGTAAAATATA
64 ATTAAATATTCTTATATGAATTTACTAAAATCATAATATATAATACTATAAAATATA
* *
10016651 AATTAACATAATTACTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAT
1 ATTTAACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAT
* *
10016716 TAAATATTCTTATATGAATTTTCTAAAATCATAATATATAATACTATGAAATATA
66 TAAATATTCTTATATGAATTTACTAAAATCATAATATATAATACTATAAAATATA
*
10016771 ATTTAACATAATTATTATTAAATATAATTTAA-TAAAATATATA
1 ATTTAACATAATTATTATTAAATATATTTTAATTAAAATATATA
10016814 TTTTCAATTA
Statistics
Matches: 150, Mismatches: 12, Indels: 4
0.90 0.07 0.02
Matches are distributed among these distances:
119 14 0.09
120 131 0.87
121 5 0.03
ACGTcount: A:0.49, C:0.05, G:0.02, T:0.44
Consensus pattern (120 bp):
ATTTAACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAT
TAAATATTCTTATATGAATTTACTAAAATCATAATATATAATACTATAAAATATA
Found at i:10018747 original size:19 final size:19
Alignment explanation
Indices: 10018723--10018759 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
10018713 ATAAAATATT
10018723 ATCGTTCAGGTACATATAC
1 ATCGTTCAGGTACATATAC
*
10018742 ATCGTTCAGGTGCATATA
1 ATCGTTCAGGTACATATA
10018760 GAGGTCATGC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.30, C:0.19, G:0.19, T:0.32
Consensus pattern (19 bp):
ATCGTTCAGGTACATATAC
Found at i:10019813 original size:15 final size:15
Alignment explanation
Indices: 10019789--10019818 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
10019779 GGAGGGTAAA
*
10019789 ACAGAGAGCAAATCG
1 ACAGAAAGCAAATCG
10019804 ACAGAAAGCAAATCG
1 ACAGAAAGCAAATCG
10019819 GCCAAAAAAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.50, C:0.20, G:0.23, T:0.07
Consensus pattern (15 bp):
ACAGAAAGCAAATCG
Found at i:10021265 original size:19 final size:19
Alignment explanation
Indices: 10021241--10021277 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
10021231 GCATGACCTC
10021241 TATATGCACCTGAACGATG
1 TATATGCACCTGAACGATG
*
10021260 TATATGTACCTGAACGAT
1 TATATGCACCTGAACGAT
10021278 AATATTTTAT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.32, C:0.19, G:0.19, T:0.30
Consensus pattern (19 bp):
TATATGCACCTGAACGATG
Found at i:10022813 original size:30 final size:30
Alignment explanation
Indices: 10022754--10022813 Score: 75
Period size: 30 Copynumber: 2.0 Consensus size: 30
10022744 AAAATAAGAG
* **
10022754 TTAGTGGCAAAATTTAATAAAATTTAAATT
1 TTAGTGGCAAAATTCAATAAAATAAAAATT
* *
10022784 TTAGTGGTAAAATTCAATAACATAAAAATT
1 TTAGTGGCAAAATTCAATAAAATAAAAATT
10022814 AAGTTACAAA
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.48, C:0.05, G:0.10, T:0.37
Consensus pattern (30 bp):
TTAGTGGCAAAATTCAATAAAATAAAAATT
Found at i:10023320 original size:18 final size:17
Alignment explanation
Indices: 10023294--10023328 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
10023284 AATATTAAGA
*
10023294 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
10023311 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
10023329 TTAATAGTAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:10023340 original size:120 final size:120
Alignment explanation
Indices: 10023187--10023470 Score: 446
Period size: 120 Copynumber: 2.4 Consensus size: 120
10023177 TAATTGAAAA
* * *
10023187 TATATATTTT-ATTAAATTATATTTAATAATAATTATGTTAAATTATATTTCATAGTATTATATA
1 TATATATTTTAATTAAAATATATTTAATAATAATTATGTTAAATTATATTTCACAGTATCATATA
* *
10023251 TTATGATTTTAGAAAATTCATATAAGAATATTTAA-TATTAAGAATTTTATTAAAT
66 TTATGATTTCAGAAAATTAATATAAGAATA-TTAATTATTAAGAATTTTATTAAAT
* * *
10023306 TATATATTTTAATTAAAATATATTTAATAGTAATTATGTTAATTTATATTTTACAGTATCATATA
1 TATATATTTTAATTAAAATATATTTAATAATAATTATGTTAAATTATATTTCACAGTATCATATA
*
10023371 TTATGATTTCAGTAAATTAATATAAGAATATTAATTATTAAGAATTTTATTAAAT
66 TTATGATTTCAGAAAATTAATATAAGAATATTAATTATTAAGAATTTTATTAAAT
*
10023426 TATATATTTTAATTAAAATATATTTAATAAAAATTATGTTTAAAT
1 TATATATTTTAATTAAAATATATTTAATAATAATTATG-TTAAAT
10023471 ATGATTAAAT
Statistics
Matches: 150, Mismatches: 12, Indels: 4
0.90 0.07 0.02
Matches are distributed among these distances:
119 14 0.09
120 131 0.87
121 5 0.03
ACGTcount: A:0.44, C:0.02, G:0.05, T:0.49
Consensus pattern (120 bp):
TATATATTTTAATTAAAATATATTTAATAATAATTATGTTAAATTATATTTCACAGTATCATATA
TTATGATTTCAGAAAATTAATATAAGAATATTAATTATTAAGAATTTTATTAAAT
Found at i:10023442 original size:18 final size:17
Alignment explanation
Indices: 10023414--10023448 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
10023404 ATTATTAAGA
*
10023414 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
10023431 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
10023449 TTAATAAAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:10023448 original size:16 final size:16
Alignment explanation
Indices: 10023414--10023468 Score: 53
Period size: 15 Copynumber: 3.4 Consensus size: 16
10023404 ATTATTAAGA
10023414 ATTTT-ATTAAATTATAT
1 ATTTTAATTAAA--ATAT
10023431 ATTTTAATTAAAATAT
1 ATTTTAATTAAAATAT
*
10023447 A-TTTAATAAAAAT-T
1 ATTTTAATTAAAATAT
10023461 ATGTTTAA
1 AT-TTTAA
10023469 ATATGATTAA
Statistics
Matches: 34, Mismatches: 1, Indels: 7
0.81 0.02 0.17
Matches are distributed among these distances:
14 2 0.06
15 11 0.32
16 10 0.29
17 5 0.15
18 6 0.18
ACGTcount: A:0.47, C:0.00, G:0.02, T:0.51
Consensus pattern (16 bp):
ATTTTAATTAAAATAT
Found at i:10023705 original size:16 final size:16
Alignment explanation
Indices: 10023684--10023735 Score: 95
Period size: 16 Copynumber: 3.2 Consensus size: 16
10023674 GATTTGCTAT
10023684 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
*
10023700 TACACCTTTAATCCAA
1 TACACCTCTAATCCAA
10023716 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
10023732 TACA
1 TACA
10023736 GCGAACCAAA
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 34 1.00
ACGTcount: A:0.38, C:0.35, G:0.00, T:0.27
Consensus pattern (16 bp):
TACACCTCTAATCCAA
Found at i:10033821 original size:18 final size:18
Alignment explanation
Indices: 10033798--10033837 Score: 64
Period size: 18 Copynumber: 2.2 Consensus size: 18
10033788 TAATTCAATT
10033798 AAAT-AAAATATTTTAAAA
1 AAATAAAAATA-TTTAAAA
10033816 AAATAAAAATATTTAAAA
1 AAATAAAAATATTTAAAA
10033834 AAAT
1 AAAT
10033838 CGATTTAGTC
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
18 15 0.71
19 6 0.29
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (18 bp):
AAATAAAAATATTTAAAA
Found at i:10034299 original size:9 final size:9
Alignment explanation
Indices: 10034285--10034669 Score: 156
Period size: 10 Copynumber: 40.6 Consensus size: 9
10034275 TTATTAGGTT
*
10034285 TTTTTATCA
1 TTTTTATAA
10034294 TTTTTATAA
1 TTTTTATAA
*
10034303 TATTTATAA
1 TTTTTATAA
*
10034312 GTTTTTATGA
1 -TTTTTATAA
10034322 TTTTTAATAA
1 TTTTT-ATAA
10034332 TTTTTTATAA
1 -TTTTTATAA
*
10034342 TATTTATAA
1 TTTTTATAA
* *
10034351 GTTTTGATATT
1 -TTTTTATA-A
10034362 TTTTTATAA
1 TTTTTATAA
*
10034371 TTTTTATCAC
1 TTTTTAT-AA
* *
10034381 GTTATATCAA
1 TTTTTAT-AA
* *
10034391 CTTTAAT-A
1 TTTTTATAA
*
10034399 TTTTTAAAA
1 TTTTTATAA
10034408 TTTTTAATAA
1 TTTTT-ATAA
10034418 -TTTTATAA
1 TTTTTATAA
*
10034426 TTTTTATGA
1 TTTTTATAA
10034435 TATTTTATAA
1 T-TTTTATAA
*
10034445 TTTTTATGAC
1 TTTTTAT-AA
*
10034455 TTTTTATATGTT
1 TTTTTATA---A
*
10034467 TTTTTAAGAA
1 TTTTT-ATAA
10034477 TTTTTATATA
1 TTTTTATA-A
10034487 TTTTTATAAA
1 TTTTTAT-AA
* *
10034497 ATTTTAAATA
1 TTTTTATA-A
10034507 TGTTTTATTAA
1 T-TTTTA-TAA
*
10034518 TTTTATAAAAA
1 TTTT-T-ATAA
***
10034529 AAATTATAA
1 TTTTTATAA
**
10034538 TTTATTAGCA
1 TTT-TTATAA
10034548 TTTATT-TAA
1 TTT-TTATAA
10034557 -TTTTATATA
1 TTTTTATA-A
10034566 TTTTTAT--
1 TTTTTATAA
10034573 TTTTTATAA
1 TTTTTATAA
*
10034582 GTTTATATCAA
1 -TTTTTAT-AA
* *
10034593 CTTTAATAA
1 TTTTTATAA
10034602 TTTTT-TAA
1 TTTTTATAA
*
10034610 TATTTAT-A
1 TTTTTATAA
10034618 TTTTTATAA
1 TTTTTATAA
* **
10034627 CTTTTACGA
1 TTTTTATAA
10034636 TATTTTATAA
1 T-TTTTATAA
* *
10034646 TTTTAATGAT
1 TTTTTAT-AA
*
10034656 TTTTTTTAA
1 TTTTTATAA
10034665 TTTTT
1 TTTTT
10034670 TGTATTTTGA
Statistics
Matches: 278, Mismatches: 64, Indels: 68
0.68 0.16 0.17
Matches are distributed among these distances:
7 9 0.03
8 27 0.10
9 93 0.33
10 121 0.44
11 19 0.07
12 7 0.03
13 2 0.01
ACGTcount: A:0.33, C:0.03, G:0.04, T:0.60
Consensus pattern (9 bp):
TTTTTATAA
Found at i:10034326 original size:39 final size:38
Alignment explanation
Indices: 10034283--10034377 Score: 138
Period size: 39 Copynumber: 2.5 Consensus size: 38
10034273 ACTTATTAGG
* *
10034283 TTTTTTTATCATTTTTATAATATTTATAAGTTTTTATGA
1 TTTTTTTATAATTTTTATAATATTTATAAGTTTTGAT-A
*
10034322 -TTTTTAATAATTTTTTATAATATTTATAAGTTTTGATA
1 TTTTTTTATAA-TTTTTATAATATTTATAAGTTTTGATA
10034360 TTTTTTTATAATTTTTAT
1 TTTTTTTATAATTTTTAT
10034378 CACGTTATAT
Statistics
Matches: 50, Mismatches: 4, Indels: 5
0.85 0.07 0.08
Matches are distributed among these distances:
38 16 0.32
39 34 0.68
ACGTcount: A:0.29, C:0.01, G:0.04, T:0.65
Consensus pattern (38 bp):
TTTTTTTATAATTTTTATAATATTTATAAGTTTTGATA
Found at i:10034347 original size:29 final size:28
Alignment explanation
Indices: 10034201--10034649 Score: 126
Period size: 29 Copynumber: 15.5 Consensus size: 28
10034191 TCAATAAATG
10034201 AATTTTTATAATATTTTTAT-ATTTTTAAT
1 AATTTTTATAAT-TTTTTATAATTTTT-AT
* *
10034230 AA-TATTATAATTTTATTAAAATAAAATTTTAT
1 AATTTTTATAATTTT-TT---AT-AATTTTTAT
* * * *
10034262 AATTTATTAGAACTTATTAGGT-TTTTTTAT
1 AATTT-TTATAATTTTTTA--TAATTTTTAT
* *
10034292 CATTTTTATAA-TATTTATAAGTTTTTAT
1 AATTTTTATAATTTTTTATAA-TTTTTAT
* *
10034320 GATTTTTAATAATTTTTTATAATATTTAT
1 AATTTTT-ATAATTTTTTATAATTTTTAT
* *
10034349 AAGTTTTGATATTTTTTTATAATTTTTAT
1 AA-TTTTTATAATTTTTTATAATTTTTAT
** * * * *
10034378 CACGTTATATCAA-CTTTAAT-ATTTTTAA
1 -AATTTTTAT-AATTTTTTATAATTTTTAT
10034406 AATTTTTAATAA--TTTTATAATTTTTAT
1 AATTTTT-ATAATTTTTTATAATTTTTAT
* *
10034433 GATATTTTATAA-TTTTTATGACTTTTTAT
1 AAT-TTTTATAATTTTTTAT-AATTTTTAT
* * *
10034462 ATGTTTTTTTAAGAATTTTTATATATTTTTAT
1 A-ATTTTTAT-A-ATTTTTTATA-ATTTTTAT
* *
10034494 AAAATTTTA-AATATGTTTTATTAATTTTATAAA
1 -AATTTTTATAAT-T-TTTTA-TAATTTT-T-AT
*** * **
10034527 AAAAATTATAATTTATTAGCATTTATT-T
1 AATTTTTATAATTTTTTATAATTT-TTAT
10034555 AA-TTTTAT-ATATTTTTAT--TTTTTAT
1 AATTTTTATAAT-TTTTTATAATTTTTAT
* * *
10034580 AAGTTTATATCAA-CTTTAATAATTTTT-T
1 AA-TTTTTAT-AATTTTTTATAATTTTTAT
* * *
10034608 AATATTTAT-A-TTTTTATAACTTTTAC
1 AATTTTTATAATTTTTTATAATTTTTAT
*
10034634 GATATTTTATAATTTT
1 AAT-TTTTATAATTTT
10034650 AATGATTTTT
Statistics
Matches: 308, Mismatches: 65, Indels: 94
0.66 0.14 0.20
Matches are distributed among these distances:
24 2 0.01
25 18 0.06
26 10 0.03
27 51 0.17
28 52 0.17
29 69 0.22
30 34 0.11
31 19 0.06
32 33 0.11
33 13 0.04
34 7 0.02
ACGTcount: A:0.35, C:0.03, G:0.04, T:0.59
Consensus pattern (28 bp):
AATTTTTATAATTTTTTATAATTTTTAT
Found at i:10034415 original size:18 final size:18
Alignment explanation
Indices: 10034285--10034669 Score: 101
Period size: 19 Copynumber: 20.8 Consensus size: 18
10034275 TTATTAGGTT
*
10034285 TTTTTATCATTTTT-ATAA
1 TTTTTATAATTTTTAAT-A
*
10034303 TATTTATAAGTTTTT-ATGA
1 TTTTTATAA-TTTTTAAT-A
*
10034322 TTTTTAATAATTTTTTATAA
1 TTTTT-ATAATTTTTAAT-A
* * *
10034342 TATTTATAAGTTTTGATATT
1 TTTTTATAA-TTTTTA-ATA
10034362 TTTTTATAATTTTT-ATCA
1 TTTTTATAATTTTTAAT-A
* * *
10034380 CGTTATATCAA-CTTTAATA
1 -TTTTTAT-AATTTTTAATA
*
10034399 TTTTTAAAATTTTTAATA
1 TTTTTATAATTTTTAATA
*
10034417 ATTTTATAATTTTT-ATGA
1 TTTTTATAATTTTTAAT-A
10034435 TATTTTATAATTTTT-ATGA
1 T-TTTTATAATTTTTAAT-A
*
10034454 CTTTTTAT-A-TGTT--T-
1 -TTTTTATAATTTTTAATA
* *
10034468 TTTTAAGAATTTTTATATA
1 TTTTTATAATTTTTA-ATA
*
10034487 TTTTTATAAAATTTTAAATA
1 TTTTTAT--AATTTTTAATA
*
10034507 TGTTTTATTAATTTTATAAAAA
1 T-TTTTA-TAATTTT-T-AATA
*** **
10034529 AAATTATAATTTATTAGCA
1 TTTTTATAATTT-TTAATA
10034548 TTTATT-TAA-TTTTATATA
1 TTT-TTATAATTTTTA-ATA
10034566 TTTTTAT--TTTTT-ATAA
1 TTTTTATAATTTTTAAT-A
* *
10034582 GTTTATATCAA-CTTTAATAA
1 -TTTTTAT-AATTTTTAAT-A
*
10034602 TTTTT-TAATATTT-ATA
1 TTTTTATAATTTTTAATA
*
10034618 TTTTTATAACTTTTACGATA
1 TTTTTATAATTTTTA--ATA
10034638 -TTTTATAA-TTTTAATGA
1 TTTTTATAATTTTTAAT-A
*
10034655 TTTTTTTTAATTTTT
1 -TTTTTATAATTTTT
10034670 TGTATTTTGA
Statistics
Matches: 274, Mismatches: 48, Indels: 88
0.67 0.12 0.21
Matches are distributed among these distances:
13 5 0.02
14 1 0.00
15 5 0.02
16 10 0.04
17 35 0.13
18 49 0.18
19 89 0.32
20 58 0.21
21 18 0.07
22 4 0.01
ACGTcount: A:0.33, C:0.03, G:0.04, T:0.60
Consensus pattern (18 bp):
TTTTTATAATTTTTAATA
Found at i:10034480 original size:22 final size:22
Alignment explanation
Indices: 10034445--10034517 Score: 76
Period size: 22 Copynumber: 3.3 Consensus size: 22
10034435 TATTTTATAA
* *
10034445 TTTTTATGACTTTTTATATGTT
1 TTTTTAAGAATTTTTATATGTT
*
10034467 TTTTTAAGAATTTTTATATATT
1 TTTTTAAGAATTTTTATATGTT
* *
10034489 TTTATAA-AATTTTAAATATGTT
1 TTTTTAAGAATTTT-TATATGTT
*
10034511 TTATTAA
1 TTTTTAA
10034518 TTTTATAAAA
Statistics
Matches: 42, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
21 6 0.14
22 36 0.86
ACGTcount: A:0.32, C:0.01, G:0.05, T:0.62
Consensus pattern (22 bp):
TTTTTAAGAATTTTTATATGTT
Found at i:10034650 original size:8 final size:8
Alignment explanation
Indices: 10034554--10034650 Score: 52
Period size: 8 Copynumber: 11.0 Consensus size: 8
10034544 AGCATTTATT
10034554 TAATTTTA
1 TAATTTTA
10034562 TATATTTT-
1 TA-ATTTTA
*
10034570 TATTTTTTA
1 TA-ATTTTA
10034579 TAAGTTTATA
1 TAA-TTT-TA
*
10034589 TCAACTTTAA
1 T-AA-TTTTA
*
10034599 TAATTTTT
1 TAATTTTA
10034607 TAATATTTA
1 TAAT-TTTA
*
10034616 TATTTTTA
1 TAATTTTA
10034624 TAACTTTTA
1 TAA-TTTTA
*
10034633 CGATATTTTA
1 -TA-ATTTTA
10034643 TAATTTTA
1 TAATTTTA
10034651 ATGATTTTTT
Statistics
Matches: 69, Mismatches: 11, Indels: 18
0.70 0.11 0.18
Matches are distributed among these distances:
8 28 0.41
9 24 0.35
10 11 0.16
11 6 0.09
ACGTcount: A:0.33, C:0.04, G:0.02, T:0.61
Consensus pattern (8 bp):
TAATTTTA
Found at i:10038245 original size:43 final size:42
Alignment explanation
Indices: 10038198--10038298 Score: 123
Period size: 42 Copynumber: 2.4 Consensus size: 42
10038188 TCCCAGACGT
*
10038198 GGTCTTACATGTAATCAAATATTGATGC-CACTGTCCCAAATAG
1 GGTCTTACATGTAATCAAATA-GGATGCTCA-TGTCCCAAATAG
* * * * *
10038241 GGTCTTACACGAAATCAAATAGGATGCTGATGTCCCAGATAT
1 GGTCTTACATGTAATCAAATAGGATGCTCATGTCCCAAATAG
10038283 GGTCTTACATGTAATC
1 GGTCTTACATGTAATC
10038299 TCAAATCGAT
Statistics
Matches: 49, Mismatches: 8, Indels: 3
0.82 0.13 0.05
Matches are distributed among these distances:
42 29 0.59
43 20 0.41
ACGTcount: A:0.32, C:0.20, G:0.19, T:0.30
Consensus pattern (42 bp):
GGTCTTACATGTAATCAAATAGGATGCTCATGTCCCAAATAG
Found at i:10038329 original size:43 final size:43
Alignment explanation
Indices: 10038179--10038334 Score: 131
Period size: 43 Copynumber: 3.7 Consensus size: 43
10038169 AGCTCGTACA
* * *
10038179 ATGCCAACGTCCCAGACGTGGTCTTACATGTAATC-AAATATTG
1 ATGCCAATGTCCCAGACGTGGTCTTACATGTAATCTCAA-ATCG
* * * * * *
10038222 ATGCCACTGTCCCAAATAG-GGTCTTACACG-AA-ATCAAATAGG
1 ATGCCAATGTCCCAGA-CGTGGTCTTACATGTAATCTCAAAT-CG
** **
10038264 ATGCTGATGTCCCAGATATGGTCTTACATGTAATCTCAAATCG
1 ATGCCAATGTCCCAGACGTGGTCTTACATGTAATCTCAAATCG
*
10038307 ATGCCAATGTCCTAGACGTGGTCTTACA
1 ATGCCAATGTCCCAGACGTGGTCTTACA
10038335 CGAAATCACA
Statistics
Matches: 85, Mismatches: 22, Indels: 12
0.71 0.18 0.10
Matches are distributed among these distances:
41 2 0.02
42 27 0.32
43 49 0.58
44 7 0.08
ACGTcount: A:0.30, C:0.23, G:0.19, T:0.28
Consensus pattern (43 bp):
ATGCCAATGTCCCAGACGTGGTCTTACATGTAATCTCAAATCG
Found at i:10038330 original size:85 final size:85
Alignment explanation
Indices: 10038187--10038342 Score: 208
Period size: 85 Copynumber: 1.8 Consensus size: 85
10038177 CAATGCCAAC
* * *
10038187 GTCCCAGACGTGGTCTTACATGTAATCAAATATTGATGCCACTGTCCCAAATAGGGTCTTACACG
1 GTCCCAGACATGGTCTTACATGTAATCAAATATCGATGCCAATGTCCCAAATAGGGTCTTACACG
10038252 AAATCAAATAGGATGCTGAT
66 AAATCAAATAGGATGCTGAT
* * * * *
10038272 GTCCCAGATATGGTCTTACATGTAATCTCAA-ATCGATGCCAATGTCCTAGA-CGTGGTCTTACA
1 GTCCCAGACATGGTCTTACATGTAATC-AAATATCGATGCCAATGTCCCAAATAG-GGTCTTACA
10038335 CGAAATCA
64 CGAAATCA
10038343 CATATCAGAA
Statistics
Matches: 61, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
84 1 0.02
85 58 0.95
86 2 0.03
ACGTcount: A:0.31, C:0.22, G:0.19, T:0.28
Consensus pattern (85 bp):
GTCCCAGACATGGTCTTACATGTAATCAAATATCGATGCCAATGTCCCAAATAGGGTCTTACACG
AAATCAAATAGGATGCTGAT
Found at i:10045981 original size:42 final size:42
Alignment explanation
Indices: 10045886--10045999 Score: 142
Period size: 42 Copynumber: 2.7 Consensus size: 42
10045876 TACAATACCA
*
10045886 ATGTCCCAGAC-GTGGTCTTACATGTAATCAAATATCGATGCC
1 ATGTCCCAGACAG-GGTCTTACACGTAATCAAATATCGATGCC
* * *
10045928 ACTGTTCCAGACAGGGTCTTACACGAAATCAAATAT-GATGCTG
1 A-TGTCCCAGACAGGGTCTTACACGTAATCAAATATCGATGC-C
*
10045971 ATGTCCCAGACATGGTCTTACACGTAATC
1 ATGTCCCAGACAGGGTCTTACACGTAATC
10046000 TCAAATCAAT
Statistics
Matches: 62, Mismatches: 7, Indels: 6
0.83 0.09 0.08
Matches are distributed among these distances:
42 31 0.50
43 30 0.48
44 1 0.02
ACGTcount: A:0.30, C:0.24, G:0.19, T:0.27
Consensus pattern (42 bp):
ATGTCCCAGACAGGGTCTTACACGTAATCAAATATCGATGCC
Found at i:10046031 original size:85 final size:85
Alignment explanation
Indices: 10045886--10046048 Score: 206
Period size: 85 Copynumber: 1.9 Consensus size: 85
10045876 TACAATACCA
* * * *
10045886 ATGTCCCAGACGTGGTCTTACATGTAATCAAATATCGATGCCACTGTTCCAGACAGGGTCTTACA
1 ATGTCCCAGACATGGTCTTACACGTAATCAAATATCAATGCCACTGTCCCAGACAGGGTCTTACA
10045951 CGAAATCAAATATGATGCTG
66 CGAAATCAAATATGATGCTG
* *
10045971 ATGTCCCAGACATGGTCTTACACGTAATCTCAA-ATCAATGCCAAC-GTCCCAGA-TGTGGTCTT
1 ATGTCCCAGACATGGTCTTACACGTAATC-AAATATCAATGCC-ACTGTCCCAGACAG-GGTCTT
* *
10046033 ACATGAAATCATATAT
63 ACACGAAATCAAATAT
10046049 CAGAAATCCT
Statistics
Matches: 67, Mismatches: 8, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
84 1 0.01
85 62 0.93
86 4 0.06
ACGTcount: A:0.31, C:0.23, G:0.18, T:0.28
Consensus pattern (85 bp):
ATGTCCCAGACATGGTCTTACACGTAATCAAATATCAATGCCACTGTCCCAGACAGGGTCTTACA
CGAAATCAAATATGATGCTG
Found at i:10048835 original size:90 final size:90
Alignment explanation
Indices: 10048713--10048927 Score: 281
Period size: 90 Copynumber: 2.4 Consensus size: 90
10048703 TAAGGGTGCT
* * * * * * *
10048713 ACCCTCAAA-CATTTAAAAAAAGAGCAATTAAGCCCCTGCTTTTTTTTTGCACTCATTTGGATAT
1 ACCCTCAAACCTTTTCAAAAAA-AGCAATTAAGCCCCTACCTTTGTTTTGCACTCAATTGGATAC
*
10048777 TTTAACTTTCAAAATGCATAAAAAA-
65 TTAAACTTTCAAAATGCATAAAAAAG
*
10048802 AGCCCTCAAACCTTTTCAAAAAAAGCAATTAAGCCCCTACCTTTGTTTTGCACTCAATTGGGTAC
1 A-CCCTCAAACCTTTTCAAAAAAAGCAATTAAGCCCCTACCTTTGTTTTGCACTCAATTGGATAC
* *
10048867 TTAAACTTTCAAAATGTATCAAAAAG
65 TTAAACTTTCAAAATGCATAAAAAAG
*
10048893 ACCCTCAAACTTTTTTCAAAAAAAGCAATTAAGCC
1 ACCCTCAAAC-CTTTTCAAAAAAAGCAATTAAGCC
10048928 ATTTTTTTTA
Statistics
Matches: 110, Mismatches: 12, Indels: 6
0.86 0.09 0.05
Matches are distributed among these distances:
89 1 0.01
90 75 0.68
91 34 0.31
ACGTcount: A:0.38, C:0.22, G:0.09, T:0.31
Consensus pattern (90 bp):
ACCCTCAAACCTTTTCAAAAAAAGCAATTAAGCCCCTACCTTTGTTTTGCACTCAATTGGATACT
TAAACTTTCAAAATGCATAAAAAAG
Found at i:10053638 original size:17 final size:17
Alignment explanation
Indices: 10053612--10053755 Score: 130
Period size: 17 Copynumber: 8.4 Consensus size: 17
10053602 GAGATTTTTT
10053612 TTTTTGAAAACACGAAAA
1 TTTTT-AAAACACGAAAA
*
10053630 TTTTCAAAACACCG-AAA
1 TTTTTAAAACA-CGAAAA
* **
10053647 TTTTTGAAAACAAGAGGA
1 TTTTT-AAAACACGAAAA
* *
10053665 TTTTTGAAATACGAAAAA
1 TTTTTAAAACACG-AAAA
*
10053683 TTTTGAAAACACGAAAA
1 TTTTTAAAACACGAAAA
* *
10053700 TTTTTGAAACACGGAAA
1 TTTTTAAAACACGAAAA
*
10053717 TTTTTGAAA-ACGAAAA
1 TTTTTAAAACACGAAAA
* *
10053733 TTTTTGAAACACAAAAA
1 TTTTTAAAACACGAAAA
10053750 TTTTTA
1 TTTTTA
10053756 GAAGACACTA
Statistics
Matches: 102, Mismatches: 19, Indels: 11
0.77 0.14 0.08
Matches are distributed among these distances:
16 15 0.15
17 57 0.56
18 30 0.29
ACGTcount: A:0.47, C:0.10, G:0.12, T:0.31
Consensus pattern (17 bp):
TTTTTAAAACACGAAAA
Found at i:10053656 original size:35 final size:35
Alignment explanation
Indices: 10053612--10053774 Score: 170
Period size: 35 Copynumber: 4.7 Consensus size: 35
10053602 GAGATTTTTT
**
10053612 TTTTTGAAAACACGAAAATTTTCAAAACACCGAAA
1 TTTTTGAAAACACGAAAATTTTTGAAACACCGAAA
* ** *
10053647 TTTTTGAAAACAAGAGGATTTTTGAAATA-CGAAAA
1 TTTTTGAAAACACGAAAATTTTTGAAACACCG-AAA
* *
10053682 ATTTTGAAAACACGAAAATTTTTGAAACACGGAAA
1 TTTTTGAAAACACGAAAATTTTTGAAACACCGAAA
**
10053717 TTTTTG-AAA-ACGAAAATTTTTGAAACACAAAAA
1 TTTTTGAAAACACGAAAATTTTTGAAACACCGAAA
* * *
10053750 TTTTTAGAAGACACTAAAAATTTTG
1 TTTTT-GAAAACACGAAAATTTTTG
10053775 GAAAATGGAT
Statistics
Matches: 105, Mismatches: 18, Indels: 9
0.80 0.14 0.07
Matches are distributed among these distances:
33 27 0.26
34 6 0.06
35 60 0.57
36 12 0.11
ACGTcount: A:0.47, C:0.10, G:0.12, T:0.30
Consensus pattern (35 bp):
TTTTTGAAAACACGAAAATTTTTGAAACACCGAAA
Found at i:10053991 original size:20 final size:19
Alignment explanation
Indices: 10053953--10053999 Score: 53
Period size: 20 Copynumber: 2.5 Consensus size: 19
10053943 GAATATATAT
10053953 TTTTTGAAACACGAGAAAAA
1 TTTTTGAAACACG-GAAAAA
*
10053973 TTTTTGAAGGCAC-GAAAAA
1 TTTTTGAA-ACACGGAAAAA
10053992 -TTTTGAAA
1 TTTTTGAAA
10054000 AATAGAATTT
Statistics
Matches: 24, Mismatches: 2, Indels: 5
0.77 0.06 0.16
Matches are distributed among these distances:
18 7 0.29
19 6 0.25
20 8 0.33
21 3 0.12
ACGTcount: A:0.45, C:0.09, G:0.17, T:0.30
Consensus pattern (19 bp):
TTTTTGAAACACGGAAAAA
Found at i:10054017 original size:22 final size:24
Alignment explanation
Indices: 10053992--10054039 Score: 64
Period size: 24 Copynumber: 2.1 Consensus size: 24
10053982 GCACGAAAAA
10053992 TTTTG-AAAAAT-AGAATTTTTTT
1 TTTTGTAAAAATGAGAATTTTTTT
* *
10054014 TTTTGTAAATATGAGACTTTTTTT
1 TTTTGTAAAAATGAGAATTTTTTT
10054038 TT
1 TT
10054040 AATATTTTTT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
22 5 0.23
23 5 0.23
24 12 0.55
ACGTcount: A:0.29, C:0.02, G:0.10, T:0.58
Consensus pattern (24 bp):
TTTTGTAAAAATGAGAATTTTTTT
Found at i:10054192 original size:12 final size:11
Alignment explanation
Indices: 10054164--10054214 Score: 50
Period size: 11 Copynumber: 4.5 Consensus size: 11
10054154 TAAAATTATT
10054164 TAAAAT-AAAA
1 TAAAATCAAAA
10054174 TAAAATCAAAA
1 TAAAATCAAAA
*
10054185 TCAAAATCAAAT
1 T-AAAATCAAAA
* *
10054197 TAAATTAAAAA
1 TAAAATCAAAA
10054208 TATAAAT
1 TA-AAAT
10054215 ATAAATATGC
Statistics
Matches: 33, Mismatches: 5, Indels: 4
0.79 0.12 0.10
Matches are distributed among these distances:
10 6 0.18
11 14 0.42
12 13 0.39
ACGTcount: A:0.69, C:0.06, G:0.00, T:0.25
Consensus pattern (11 bp):
TAAAATCAAAA
Found at i:10054196 original size:22 final size:22
Alignment explanation
Indices: 10054165--10054206 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
10054155 AAAATTATTT
10054165 AAAATAAAATAAAATCAAAATC
1 AAAATAAAATAAAATCAAAATC
* * *
10054187 AAAATCAAATTAAATTAAAA
1 AAAATAAAATAAAATCAAAA
10054207 ATATAAATAT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 17 1.00
ACGTcount: A:0.71, C:0.07, G:0.00, T:0.21
Consensus pattern (22 bp):
AAAATAAAATAAAATCAAAATC
Found at i:10054374 original size:11 final size:10
Alignment explanation
Indices: 10054348--10054408 Score: 65
Period size: 10 Copynumber: 6.1 Consensus size: 10
10054338 GAATTGAACC
10054348 TCTT-TTTTT
1 TCTTCTTTTT
10054357 TCTT-TTTTT
1 TCTTCTTTTT
*
10054366 CCTTCTTTTT
1 TCTTCTTTTT
10054376 TCCTTCTCTTTT
1 T-CTTCT-TTTT
10054388 TCTTCTTTTCT
1 TCTTCTTTT-T
10054399 T-TTCTTTTT
1 TCTTCTTTTT
10054408 T
1 T
10054409 TCTGCTGGGC
Statistics
Matches: 46, Mismatches: 2, Indels: 8
0.82 0.04 0.14
Matches are distributed among these distances:
9 14 0.30
10 15 0.33
11 12 0.26
12 5 0.11
ACGTcount: A:0.00, C:0.21, G:0.00, T:0.79
Consensus pattern (10 bp):
TCTTCTTTTT
Found at i:10054376 original size:19 final size:20
Alignment explanation
Indices: 10054351--10054410 Score: 66
Period size: 22 Copynumber: 2.8 Consensus size: 20
10054341 TTGAACCTCT
10054351 TTTTTTTCTTTTTTTCCTTC
1 TTTTTTTCTTTTTTTCCTTC
* *
10054371 TTTTTTCCTTCTCTTTTTCTTC
1 TTTTTTTCTT-T-TTTTCCTTC
10054393 TTTTCTTTTCTTTTTTTC
1 -TTT-TTTTCTTTTTTTC
10054411 TGCTGGGCCA
Statistics
Matches: 32, Mismatches: 4, Indels: 6
0.76 0.10 0.14
Matches are distributed among these distances:
20 9 0.28
21 1 0.03
22 12 0.38
23 4 0.12
24 6 0.19
ACGTcount: A:0.00, C:0.22, G:0.00, T:0.78
Consensus pattern (20 bp):
TTTTTTTCTTTTTTTCCTTC
Found at i:10054388 original size:14 final size:13
Alignment explanation
Indices: 10054355--10054401 Score: 53
Period size: 14 Copynumber: 3.6 Consensus size: 13
10054345 ACCTCTTTTT
10054355 TTTCTTTTTTTCC
1 TTTCTTTTTTTCC
10054368 -TTC-TTTTTTCC
1 TTTCTTTTTTTCC
*
10054379 TTCTCTTTTTCTTCT
1 TT-TCTTTTT-TTCC
10054394 TTTCTTTT
1 TTTCTTTT
10054402 CTTTTTTTCT
Statistics
Matches: 29, Mismatches: 1, Indels: 7
0.78 0.03 0.19
Matches are distributed among these distances:
11 8 0.28
12 4 0.14
13 2 0.07
14 10 0.34
15 5 0.17
ACGTcount: A:0.00, C:0.23, G:0.00, T:0.77
Consensus pattern (13 bp):
TTTCTTTTTTTCC
Found at i:10054682 original size:24 final size:24
Alignment explanation
Indices: 10054662--10054721 Score: 79
Period size: 24 Copynumber: 2.5 Consensus size: 24
10054652 CTTTTCTTTT
*
10054662 TCTTTT-TTCTTTCTTTCTTCTTCC
1 TCTTTTCTTC-TTCCTTCTTCTTCC
10054686 TCTTTTCTTCTTCCTTCTTCTTCC
1 TCTTTTCTTCTTCCTTCTTCTTCC
*
10054710 T-TCTTCTTCTTC
1 TCTTTTCTTCTTC
10054722 AAAGTCTAGC
Statistics
Matches: 33, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
23 10 0.30
24 20 0.61
25 3 0.09
ACGTcount: A:0.00, C:0.33, G:0.00, T:0.67
Consensus pattern (24 bp):
TCTTTTCTTCTTCCTTCTTCTTCC
Found at i:10054684 original size:3 final size:3
Alignment explanation
Indices: 10054650--10054721 Score: 62
Period size: 3 Copynumber: 24.0 Consensus size: 3
10054640 TTTTTATTAT
* *
10054650 TTC TT- TTC TTT TTC TT- TT- TTC TTTC TTTC TTC TTC CTC TT- TTC
1 TTC TTC TTC TTC TTC TTC TTC TTC -TTC -TTC TTC TTC TTC TTC TTC
10054693 TTC TTCC TTC TTC TTCC TTC TTC TTC TTC
1 TTC TT-C TTC TTC TT-C TTC TTC TTC TTC
10054722 AAAGTCTAGC
Statistics
Matches: 59, Mismatches: 4, Indels: 12
0.79 0.05 0.16
Matches are distributed among these distances:
2 8 0.14
3 38 0.64
4 13 0.22
ACGTcount: A:0.00, C:0.31, G:0.00, T:0.69
Consensus pattern (3 bp):
TTC
Found at i:10054689 original size:13 final size:13
Alignment explanation
Indices: 10054673--10054721 Score: 52
Period size: 13 Copynumber: 3.9 Consensus size: 13
10054663 CTTTTTTCTT
10054673 TCTTTCTTCTTCC
1 TCTTTCTTCTTCC
10054686 TCTTTTCTTCTT-C
1 TC-TTTCTTCTTCC
10054699 -C-TTCTTCTTCC
1 TCTTTCTTCTTCC
10054710 T-TCTTCTTCTTC
1 TCT-TTCTTCTTC
10054722 AAAGTCTAGC
Statistics
Matches: 31, Mismatches: 0, Indels: 10
0.76 0.00 0.24
Matches are distributed among these distances:
10 8 0.26
11 1 0.03
12 1 0.03
13 12 0.39
14 9 0.29
ACGTcount: A:0.00, C:0.37, G:0.00, T:0.63
Consensus pattern (13 bp):
TCTTTCTTCTTCC
Found at i:10054705 original size:10 final size:10
Alignment explanation
Indices: 10054690--10054718 Score: 58
Period size: 10 Copynumber: 2.9 Consensus size: 10
10054680 TCTTCCTCTT
10054690 TTCTTCTTCC
1 TTCTTCTTCC
10054700 TTCTTCTTCC
1 TTCTTCTTCC
10054710 TTCTTCTTC
1 TTCTTCTTC
10054719 TTCAAAGTCT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 19 1.00
ACGTcount: A:0.00, C:0.38, G:0.00, T:0.62
Consensus pattern (10 bp):
TTCTTCTTCC
Found at i:10055198 original size:30 final size:29
Alignment explanation
Indices: 10055085--10055204 Score: 111
Period size: 30 Copynumber: 4.1 Consensus size: 29
10055075 AAATGTAATT
* *
10055085 TTTAGAAAA-TTTA-GGATTAAAATGAAA
1 TTTAGAAAAGTTTAGGGGTCAAAATGAAA
* * *
10055112 TTTA-ATGAAAGTTTAGGGGTCTAAGTAAAA
1 TTTAGA--AAAGTTTAGGGGTCAAAATGAAA
* *
10055142 TTTAAAGAAAGTTTAAGGGTCAAAATGAAA
1 TTTAGA-AAAGTTTAGGGGTCAAAATGAAA
*
10055172 TTTAGGAAAAGTTTAGGGGTCAAAATGCAA
1 TTTA-GAAAAGTTTAGGGGTCAAAATGAAA
10055202 TTT
1 TTT
10055205 TTATTTTTAA
Statistics
Matches: 75, Mismatches: 12, Indels: 9
0.78 0.12 0.09
Matches are distributed among these distances:
26 1 0.01
27 4 0.05
28 3 0.04
29 4 0.05
30 61 0.81
31 2 0.03
ACGTcount: A:0.44, C:0.03, G:0.21, T:0.32
Consensus pattern (29 bp):
TTTAGAAAAGTTTAGGGGTCAAAATGAAA
Found at i:10055219 original size:14 final size:15
Alignment explanation
Indices: 10055200--10055234 Score: 54
Period size: 14 Copynumber: 2.4 Consensus size: 15
10055190 GTCAAAATGC
10055200 AATTTTTATTTTT-A
1 AATTTTTATTTTTGA
*
10055214 AATTTTTTTTTTTGA
1 AATTTTTATTTTTGA
10055229 AATTTT
1 AATTTT
10055235 GAAAATTAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 12 0.63
15 7 0.37
ACGTcount: A:0.26, C:0.00, G:0.03, T:0.71
Consensus pattern (15 bp):
AATTTTTATTTTTGA
Found at i:10055560 original size:55 final size:54
Alignment explanation
Indices: 10055476--10055685 Score: 288
Period size: 54 Copynumber: 3.9 Consensus size: 54
10055466 CACGTGAGCC
*
10055476 AAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTGAAAACAGAATTTGCAA
1 AAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAACAGAATTTG-AA
*
10055531 AAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTG--AA-A-AA-TAGAAA
1 AAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTGAAAACAGAATTTG-AA
* * *
10055582 AAGGCTCAACTCACCTCTCGCAATATGAGTTGGTTTTTGAAAAATAGAAATT-AA
1 AAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTG-AAAACAGAATTTGAA
*
10055636 AAGGCTCAACTCACCTCTCGCAATATGAATTGATTTTTGAAAACAGAATT
1 AAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAACAGAATT
10055686 AAAAGTAGAA
Statistics
Matches: 139, Mismatches: 9, Indels: 16
0.85 0.05 0.10
Matches are distributed among these distances:
50 6 0.04
51 36 0.26
52 2 0.01
53 12 0.09
54 42 0.30
55 34 0.24
56 7 0.05
ACGTcount: A:0.36, C:0.18, G:0.16, T:0.30
Consensus pattern (54 bp):
AAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAACAGAATTTGAA
Found at i:10055690 original size:106 final size:105
Alignment explanation
Indices: 10055476--10055678 Score: 320
Period size: 106 Copynumber: 1.9 Consensus size: 105
10055466 CACGTGAGCC
* *
10055476 AAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTGAAAACAGAATTTGCAAAAGGCTCAAC
1 AAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAACAGAAATT-CAAAAGGCTCAAC
* *
10055541 TCACCTCTCGCAATATGAGTTGATTTTTTGAAAAATAGAAA
65 TCACCTCTCGCAATATGAATTGATTTTTTGAAAAAGAGAAA
* *
10055582 AAGGCTCAACTCACCTCTCGCAATATGAGTTGGTTTTTGAAAAATAGAAATT-AAAAGGCTCAAC
1 AAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTG-AAAACAGAAATTCAAAAGGCTCAAC
10055646 TCACCTCTCGCAATATGAATTGA-TTTTTGAAAA
65 TCACCTCTCGCAATATGAATTGATTTTTTGAAAA
10055679 CAGAATTAAA
Statistics
Matches: 91, Mismatches: 5, Indels: 4
0.91 0.05 0.04
Matches are distributed among these distances:
104 10 0.11
105 34 0.37
106 37 0.41
107 10 0.11
ACGTcount: A:0.36, C:0.18, G:0.16, T:0.30
Consensus pattern (105 bp):
AAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAACAGAAATTCAAAAGGCTCAACT
CACCTCTCGCAATATGAATTGATTTTTTGAAAAAGAGAAA
Found at i:10055984 original size:15 final size:16
Alignment explanation
Indices: 10055951--10055984 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
10055941 TTGATTTTTG
* *
10055951 AAAAGCATAGATTGAA
1 AAAAACATAAATTGAA
10055967 AAAAACATAAATTGAA
1 AAAAACATAAATTGAA
10055983 AA
1 AA
10055985 TACCTCAGCA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.65, C:0.06, G:0.12, T:0.18
Consensus pattern (16 bp):
AAAAACATAAATTGAA
Found at i:10056040 original size:90 final size:88
Alignment explanation
Indices: 10055791--10056044 Score: 315
Period size: 85 Copynumber: 2.9 Consensus size: 88
10055781 AACAGAAATT
* * *
10055791 AAAAACAGAATTTGAAAAGACCTCAGCGTGTGGCCTGAGACTCAACTCACCTCTTGCAATATGAG
1 AAAAACAGAAATTGAAAATACCTCAGC-TGTGGCCTGAGGCTCAACTCACCTCTTGCAATATGAG
*
10055856 TTGA--TTTGAAAAGTAGAATTAG
65 TTGATTTTTGAAAAGTAGAATTAA
* * * *
10055878 TAAAGCAGAAATTGAAAATACCTCAGC-GT-GCCTTGAGGCTCAACTCACCTCTCGCAATATAAG
1 AAAAACAGAAATTGAAAATACCTCAGCTGTGGCC-TGAGGCTCAACTCACCTCTTGCAATATGAG
10055941 TTGATTTTTGAAAAGCATAG-ATTGAA
65 TTGATTTTTGAAAAG--TAGAATT-AA
*
10055967 AAAAACATAAATTGAAAATACCTCAGCATGTGAGCC-GAGGCTCAACTCA-CTCTTGCAATATGA
1 AAAAACAGAAATTGAAAATACCTCAGC-TGTG-GCCTGAGGCTCAACTCACCTCTTGCAATATGA
10056030 GTTGATTTTTGAAAA
64 GTTGATTTTTGAAAA
10056045 ACAAAAATTA
Statistics
Matches: 144, Mismatches: 13, Indels: 17
0.83 0.07 0.10
Matches are distributed among these distances:
84 3 0.02
85 33 0.23
87 32 0.22
88 3 0.02
89 28 0.19
90 27 0.19
91 15 0.10
93 3 0.02
ACGTcount: A:0.37, C:0.18, G:0.19, T:0.26
Consensus pattern (88 bp):
AAAAACAGAAATTGAAAATACCTCAGCTGTGGCCTGAGGCTCAACTCACCTCTTGCAATATGAGT
TGATTTTTGAAAAGTAGAATTAA
Found at i:10056285 original size:123 final size:123
Alignment explanation
Indices: 10055968--10056284 Score: 539
Period size: 123 Copynumber: 2.6 Consensus size: 123
10055958 TAGATTGAAA
* * * * *
10055968 AAAACATAAATTGAAAATACCTCAGCATGTGAGCCGAGGCTCAACTCAC-TCTTGCAATATGAGT
1 AAAACATAAACTAAAAATACCTCGGC--GTGACCCGAGGCTCAACTCACTTCTCGCAATATGAGT
10056032 TGATTTTTGAAAAACAAAAATTAAAAGGCTTAACTCACCTCTCGCAATATGAGTCAATTT
64 TGATTTTTGAAAAACAAAAATTAAAAGGCTTAACTCACCTCTCGCAATATGAGTCAATTT
* *
10056092 AAAACATAAACTAAAAATACCTCGGCGTGCCCCGAGGCTCAACTCATTTCTCGCAATATGAGTTG
1 AAAACATAAACTAAAAATACCTCGGCGTGACCCGAGGCTCAACTCACTTCTCGCAATATGAGTTG
10056157 ATTTTTGAAAAACAAAAATTAAAAGGCTTAACTCACCTCTCGCAATATGAGTCAATTT
66 ATTTTTGAAAAACAAAAATTAAAAGGCTTAACTCACCTCTCGCAATATGAGTCAATTT
10056215 AAAACATAAACTAAAAATACCTCGGCGTG-CCCGAGGCTCAACTCACTTCTCGCAATATGAGTTG
1 AAAACATAAACTAAAAATACCTCGGCGTGACCCGAGGCTCAACTCACTTCTCGCAATATGAGTTG
10056279 ATTTTT
66 ATTTTT
10056285 TTTAAAAAAT
Statistics
Matches: 184, Mismatches: 8, Indels: 4
0.94 0.04 0.02
Matches are distributed among these distances:
122 58 0.32
123 103 0.56
124 23 0.12
ACGTcount: A:0.37, C:0.21, G:0.15, T:0.27
Consensus pattern (123 bp):
AAAACATAAACTAAAAATACCTCGGCGTGACCCGAGGCTCAACTCACTTCTCGCAATATGAGTTG
ATTTTTGAAAAACAAAAATTAAAAGGCTTAACTCACCTCTCGCAATATGAGTCAATTT
Found at i:10056743 original size:190 final size:191
Alignment explanation
Indices: 10056125--10057308 Score: 2234
Period size: 191 Copynumber: 6.2 Consensus size: 191
10056115 GGCGTGCCCC
10056125 GAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTTGAAAAACAAAAATTAAAAGGCTTAACT
1 GAGGCTCAACTCATTTCTCGCAATATGAGTTGA-TTTTGAAAAACAAAAATTAAAAGGCTTAACT
10056190 CACCTCTCGCAATATGAGTCAATTTAAAACATAAACTAAAAATACCTCGGCGTGCCCGAGGCTCA
65 CACCTCTCGCAATATGAGTCAATTTAAAACATAAACTAAAAATACCTCGGCGTGCCCGAGGCTCA
10056255 ACTCACTTCTCGCAATATGAGTTGATTTTTTTTAAAAAATTTAAAAATACCTCAACGTGTCTT
130 ACTCACTTCTCGCAATATGAGTTGA-TTTTTTTAAAAAATTTAAAAATACCTCAACGTGTCTT
10056318 GAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTGAAAAACAAAAATTAAAAGGCTTAACTC
1 GAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTGAAAAACAAAAATTAAAAGGCTTAACTC
10056383 ACCTCTCGCAATATGAGTCAATTTAAAACATAAACTAAAAATACCTCGGCGTGCCCGAGGCTCAA
66 ACCTCTCGCAATATGAGTCAATTTAAAACATAAACTAAAAATACCTCGGCGTGCCCGAGGCTCAA
10056448 CTCACTTCTCGCAATATGAGTTGATTTTTTTAAAAAATTTAAAAATACCTCAACGTGTCTT
131 CTCACTTCTCGCAATATGAGTTGATTTTTTTAAAAAATTTAAAAATACCTCAACGTGTCTT
10056509 GAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTGAAAAACAAAAATTAAAAGGCTTAACTC
1 GAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTGAAAAACAAAAATTAAAAGGCTTAACTC
10056574 ACCTCTCGCAATATGAGTCAATTTAAAACATAAACT-AAAATACCTCGGCGTGCCCCGAGGCTCA
66 ACCTCTCGCAATATGAGTCAATTTAAAACATAAACTAAAAATACCTCGGCGTG-CCCGAGGCTCA
10056638 ACTCACTTCTCGCAATATGAGTTGATTTTTTTAAAAAATTTAAAAA-ACCTCAACGTGTCTT
130 ACTCACTTCTCGCAATATGAGTTGATTTTTTTAAAAAATTTAAAAATACCTCAACGTGTCTT
10056699 GAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTGAAAAACAAAAATTAAAAGGCTTAACTC
1 GAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTGAAAAACAAAAATTAAAAGGCTTAACTC
10056764 ACCTCTCGCAATATGAGTCAATTTAAAACATAAACTAAAAATACCTCGGCGTGCCCGAGGCTCAA
66 ACCTCTCGCAATATGAGTCAATTTAAAACATAAACTAAAAATACCTCGGCGTGCCCGAGGCTCAA
*
10056829 CTCACTTCTCGCAATATGAGTTGATTTTTTT-TAAAATTTAAAAATACCTCAAC-TGTCTT
131 CTCACTTCTCGCAATATGAGTTGATTTTTTTAAAAAATTTAAAAATACCTCAACGTGTCTT
*
10056888 GAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTGAAAAACAAAAATTAAAAGGCTTAACTT
1 GAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTGAAAAACAAAAATTAAAAGGCTTAACTC
10056953 ACCTCTCGCAATATGAGTCAATTTAAAACATAAACTAAAAATACCTCGGCGTGCCCGAGGCTCAA
66 ACCTCTCGCAATATGAGTCAATTTAAAACATAAACTAAAAATACCTCGGCGTGCCCGAGGCTCAA
*
10057018 CTCACTTCTCGCAATATGAGTTGATTTTTTTTAAAAAAAATTAAAAATACCTCAACGTGTCTT
131 CTCACTTCTCGCAATATGAGTTGA-TTTTTTT-AAAAAATTTAAAAATACCTCAACGTGTCTT
10057081 GAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTGAAAAACAAAAATTAAAAGGCTTAACTC
1 GAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTGAAAAACAAAAATTAAAAGGCTTAACTC
10057146 ACCTCTCGCAATATGAGTCAATTTAAAACATAAACTAAAAATACCTCGGCGTGCCCCGAGGCTCA
66 ACCTCTCGCAATATGAGTCAATTTAAAACATAAACTAAAAATACCTCGGCGTG-CCCGAGGCTCA
* *
10057211 ACTCACTTCTCGCAATATGAGTTGATTTTTTAAAAAAAATTAAAAATACCTCAACGTGTCTT
130 ACTCACTTCTCGCAATATGAGTTGATTTTTTTAAAAAATTTAAAAATACCTCAACGTGTCTT
10057273 GAGGCTCAACTCA-TTCTCGCAATATGAGTTGATTTT
1 GAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTT
10057309 CCTTGGAAAG
Statistics
Matches: 977, Mismatches: 6, Indels: 18
0.98 0.01 0.02
Matches are distributed among these distances:
189 171 0.18
190 190 0.19
191 234 0.24
192 184 0.19
193 162 0.17
194 36 0.04
ACGTcount: A:0.36, C:0.20, G:0.14, T:0.30
Consensus pattern (191 bp):
GAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTGAAAAACAAAAATTAAAAGGCTTAACTC
ACCTCTCGCAATATGAGTCAATTTAAAACATAAACTAAAAATACCTCGGCGTGCCCGAGGCTCAA
CTCACTTCTCGCAATATGAGTTGATTTTTTTAAAAAATTTAAAAATACCTCAACGTGTCTT
Found at i:10057099 original size:72 final size:73
Alignment explanation
Indices: 10056974--10057117 Score: 211
Period size: 72 Copynumber: 2.0 Consensus size: 73
10056964 TATGAGTCAA
**
10056974 TTTAAAACATAAACTAAAAATACCTCGGCGTGCCCGAGGCTCAACTCACTTCTCGCAATATGAGT
1 TTTAAAACATAAACTAAAAATACCTCAACGTGCCCGAGGCTCAACTCACTTCTCGCAATATGAGT
10057039 TGATTTTT
66 TGATTTTT
* ** *
10057047 TTTAAAA-A-AAATTAAAAATACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAG
1 TTTAAAACATAAACTAAAAATACCTCAACGTG-CCCGAGGCTCAACTCACTTCTCGCAATATGAG
10057110 TTGATTTT
65 TTGATTTT
10057118 GAAAAACAAA
Statistics
Matches: 64, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
71 19 0.30
72 38 0.59
73 7 0.11
ACGTcount: A:0.33, C:0.20, G:0.14, T:0.33
Consensus pattern (73 bp):
TTTAAAACATAAACTAAAAATACCTCAACGTGCCCGAGGCTCAACTCACTTCTCGCAATATGAGT
TGATTTTT
Found at i:10057129 original size:72 final size:69
Alignment explanation
Indices: 10056942--10057135 Score: 203
Period size: 72 Copynumber: 2.8 Consensus size: 69
10056932 AAAAATTAAA
* * * * * * * **
10056942 AGGCTTAACTTACCTCTCGCAATATGAG-TCAATTTAAAACATAAACTAAAAATACCTCGGCGTG
1 AGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTAAAACAAAAATTAAAAATACCTCAACGTG
10057006 CCCG
66 CCCG
*
10057010 AGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTTTTAAA-AAAAATTAAAAATACCTCAAC
1 AGGCTCAACTCACTTCTCGCAATATGAGTTGA---TTTTAAAACAAAAATTAAAAATACCTCAAC
**
10057074 GTGTCTTG
63 GTG-CCCG
*
10057082 AGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTGAAAAACAAAAATTAAAA
1 AGGCTCAACTCACTTCTCGCAATATGAGTTGATTTT--AAAACAAAAATTAAAA
10057136 GGCTTAACTC
Statistics
Matches: 104, Mismatches: 14, Indels: 12
0.80 0.11 0.09
Matches are distributed among these distances:
68 25 0.24
69 6 0.06
71 23 0.22
72 50 0.48
ACGTcount: A:0.37, C:0.20, G:0.13, T:0.30
Consensus pattern (69 bp):
AGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTAAAACAAAAATTAAAAATACCTCAACGTG
CCCG
Found at i:10057294 original size:69 final size:72
Alignment explanation
Indices: 10057135--10057308 Score: 216
Period size: 69 Copynumber: 2.5 Consensus size: 72
10057125 AAAAATTAAA
* * * * **
10057135 AGGCTTAACTCACCTCTCGCAATATGAG-TCA--ATTTAAAACATAAACTAAAAATACCTCGGCG
1 AGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTTAAAACATAAACTAAAAATACCTCAACG
10057197 TGCCCCG
66 TGCCCCG
*
10057204 AGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTTAAAA-A-AAATTAAAAATACCTCAACG
1 AGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTTAAAACATAAACTAAAAATACCTCAACG
* **
10057267 TGTCTTG
66 TGCCCCG
10057274 AGGCTCAACTCA-TTCTCGCAATATGAGTTGATTTT
1 AGGCTCAACTCACTTCTCGCAATATGAGTTGATTTT
10057309 CCTTGGAAAG
Statistics
Matches: 92, Mismatches: 10, Indels: 6
0.85 0.09 0.06
Matches are distributed among these distances:
69 49 0.53
70 35 0.38
71 1 0.01
72 7 0.08
ACGTcount: A:0.33, C:0.22, G:0.14, T:0.30
Consensus pattern (72 bp):
AGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTTAAAACATAAACTAAAAATACCTCAACG
TGCCCCG
Found at i:10065451 original size:39 final size:38
Alignment explanation
Indices: 10065334--10065462 Score: 106
Period size: 36 Copynumber: 3.4 Consensus size: 38
10065324 GATCCGATTG
* * *
10065334 AAACATGAGAATTTCTTGTTTTGAAAACACGAGAATTTTA
1 AAACACGAG-ATTT-TTTTTTTGAAAACACGAAAATTTTA
* * * *
10065374 AGACA-TA-ATATTTTTTTT-AAAAC-C-AAAATTTATG
1 AAACACGAGATTTTTTTTTTGAAAACACGAAAATTT-TA
10065408 AAACACGAGATTTTTTTTTTGAAAACACGAAAATTTTCA
1 AAACACGAGATTTTTTTTTTGAAAACACGAAAATTTT-A
*
10065447 AAACACCGAAATTTTT
1 AAACA-CGAGATTTTT
10065463 GAAAACAAGA
Statistics
Matches: 70, Mismatches: 11, Indels: 16
0.72 0.11 0.16
Matches are distributed among these distances:
33 6 0.09
34 6 0.09
35 6 0.09
36 16 0.23
37 8 0.11
38 2 0.03
39 13 0.19
40 13 0.19
ACGTcount: A:0.42, C:0.12, G:0.10, T:0.36
Consensus pattern (38 bp):
AAACACGAGATTTTTTTTTTGAAAACACGAAAATTTTA
Found at i:10065456 original size:18 final size:17
Alignment explanation
Indices: 10065424--10065564 Score: 121
Period size: 18 Copynumber: 8.2 Consensus size: 17
10065414 GAGATTTTTT
10065424 TTTTGAAAACACGAAAA
1 TTTTGAAAACACGAAAA
* *
10065441 TTTTCAAAACACCGAAAT
1 TTTTGAAAACA-CGAAAA
* * *
10065459 TTTTGAAAACAAGAGGAT
1 TTTTGAAAACACGA-AAA
*
10065477 TTTTG-AAATACGAAAA
1 TTTTGAAAACACGAAAA
10065493 TTTTTGAAAACACGAAAA
1 -TTTTGAAAACACGAAAA
*
10065511 TTTTTG-AAACACGGAAAT
1 -TTTTGAAAACAC-GAAAA
10065529 TTTTGAAAACA--AAAA
1 TTTTGAAAACACGAAAA
*
10065544 TTTTTG-AAACACAAAAA
1 -TTTTGAAAACACGAAAA
10065561 TTTT
1 TTTT
10065565 TAGAAGACAC
Statistics
Matches: 103, Mismatches: 12, Indels: 19
0.77 0.09 0.14
Matches are distributed among these distances:
15 8 0.08
16 10 0.10
17 38 0.37
18 47 0.46
ACGTcount: A:0.48, C:0.11, G:0.11, T:0.30
Consensus pattern (17 bp):
TTTTGAAAACACGAAAA
Found at i:10065469 original size:35 final size:35
Alignment explanation
Indices: 10065423--10065585 Score: 179
Period size: 35 Copynumber: 4.7 Consensus size: 35
10065413 CGAGATTTTT
**
10065423 TTTTTGAAAACACGAAAATTTTCAAAACACCGAAA
1 TTTTTGAAAACACGAAAATTTTTGAAACACCGAAA
* ** *
10065458 TTTTTGAAAACAAGAGGATTTTTGAAATA-CGAAAA
1 TTTTTGAAAACACGAAAATTTTTGAAACACCG-AAA
*
10065493 TTTTTGAAAACACGAAAATTTTTGAAACACGGAAA
1 TTTTTGAAAACACGAAAATTTTTGAAACACCGAAA
**
10065528 TTTTTGAAAACA--AAAATTTTTGAAACACAAAAA
1 TTTTTGAAAACACGAAAATTTTTGAAACACCGAAA
* * *
10065561 TTTTTAGAAGACACTAAAAATTTTG
1 TTTTT-GAAAACACGAAAATTTTTG
10065586 GAAAATGGAT
Statistics
Matches: 108, Mismatches: 15, Indels: 9
0.82 0.11 0.07
Matches are distributed among these distances:
33 24 0.22
34 8 0.07
35 66 0.61
36 10 0.09
ACGTcount: A:0.47, C:0.10, G:0.12, T:0.31
Consensus pattern (35 bp):
TTTTTGAAAACACGAAAATTTTTGAAACACCGAAA
Found at i:10065565 original size:18 final size:17
Alignment explanation
Indices: 10065423--10065589 Score: 149
Period size: 17 Copynumber: 9.5 Consensus size: 17
10065413 CGAGATTTTT
*
10065423 TTTTTGAAAACACGAAAA
1 TTTTTG-AAACACAAAAA
** **
10065441 TTTTCAAAACACCGAAA
1 TTTTTGAAACACAAAAA
*
10065458 TTTTTGAAA-ACAAGAGGA
1 TTTTTGAAACACAA-A-AA
* *
10065476 TTTTTGAAATACGAAAA
1 TTTTTGAAACACAAAAA
*
10065493 TTTTTGAAAACACGAAAA
1 TTTTTG-AAACACAAAAA
**
10065511 TTTTTGAAACACGGAAA
1 TTTTTGAAACACAAAAA
10065528 TTTTTGAAA-ACAAAAA
1 TTTTTGAAACACAAAAA
10065544 TTTTTGAAACACAAAAA
1 TTTTTGAAACACAAAAA
10065561 TTTTTAGAAGACACTAAAAA
1 TTTTT-GAA-ACAC-AAAAA
*
10065581 TTTTGGAAA
1 TTTTTGAAA
10065590 ATGGATTTTT
Statistics
Matches: 125, Mismatches: 16, Indels: 16
0.80 0.10 0.10
Matches are distributed among these distances:
16 16 0.13
17 55 0.44
18 35 0.28
19 10 0.08
20 9 0.07
ACGTcount: A:0.48, C:0.10, G:0.12, T:0.30
Consensus pattern (17 bp):
TTTTTGAAACACAAAAA
Found at i:10065801 original size:20 final size:19
Alignment explanation
Indices: 10065763--10065809 Score: 53
Period size: 20 Copynumber: 2.5 Consensus size: 19
10065753 AATATATTTT
10065763 TTTTTGAAACACGAGAAAAA
1 TTTTTGAAACACG-GAAAAA
*
10065783 TTTTTGAAGGCAC-GAAAAA
1 TTTTTGAA-ACACGGAAAAA
10065802 -TTTTGAAA
1 TTTTTGAAA
10065810 AATAGAAATT
Statistics
Matches: 24, Mismatches: 2, Indels: 5
0.77 0.06 0.16
Matches are distributed among these distances:
18 7 0.29
19 6 0.25
20 8 0.33
21 3 0.12
ACGTcount: A:0.45, C:0.09, G:0.17, T:0.30
Consensus pattern (19 bp):
TTTTTGAAACACGGAAAAA
Found at i:10065832 original size:20 final size:22
Alignment explanation
Indices: 10065809--10065848 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
10065799 AAATTTTGAA
10065809 AAATA-GA-AATTTTTTTTTGT
1 AAATATGAGAATTTTTTTTTGT
*
10065829 AAATATGAGACTTTTTTTTT
1 AAATATGAGAATTTTTTTTT
10065849 TAATATTTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 5 0.29
21 2 0.12
22 10 0.59
ACGTcount: A:0.33, C:0.03, G:0.10, T:0.55
Consensus pattern (22 bp):
AAATATGAGAATTTTTTTTTGT
Found at i:10065979 original size:17 final size:16
Alignment explanation
Indices: 10065939--10066001 Score: 65
Period size: 17 Copynumber: 3.8 Consensus size: 16
10065929 TAAAATTATT
10065939 TAAAAT-AAAATAAAA
1 TAAAATAAAAATAAAA
*
10065954 TAAAATAAAAATCAAAT
1 TAAAATAAAAAT-AAAA
*
10065971 TAAATTAAAAATATAAA
1 TAAAATAAAAATA-AAA
*
10065988 TATAAATATAAATA
1 TA-AAATAAAAATA
10066002 TGCATAAAAT
Statistics
Matches: 39, Mismatches: 5, Indels: 5
0.80 0.10 0.10
Matches are distributed among these distances:
15 6 0.15
16 6 0.15
17 18 0.46
18 9 0.23
ACGTcount: A:0.71, C:0.02, G:0.00, T:0.27
Consensus pattern (16 bp):
TAAAATAAAAATAAAA
Found at i:10065990 original size:6 final size:6
Alignment explanation
Indices: 10065939--10066002 Score: 57
Period size: 6 Copynumber: 11.2 Consensus size: 6
10065929 TAAAATTATT
* *
10065939 TAAA-A TAAA-A TAAA-A TAAA-A TAAAAA TCAAAT- TAAATTA AAAATA
1 TAAATA TAAATA TAAATA TAAATA TAAATA T-AAATA TAAA-TA TAAATA
10065984 TAAATA TAAATA TAAATA T
1 TAAATA TAAATA TAAATA T
10066003 GCATAAAATG
Statistics
Matches: 52, Mismatches: 3, Indels: 7
0.84 0.05 0.11
Matches are distributed among these distances:
5 22 0.42
6 24 0.46
7 6 0.12
ACGTcount: A:0.70, C:0.02, G:0.00, T:0.28
Consensus pattern (6 bp):
TAAATA
Found at i:10066142 original size:9 final size:9
Alignment explanation
Indices: 10066128--10066193 Score: 62
Period size: 9 Copynumber: 6.9 Consensus size: 9
10066118 GAATTGAACC
10066128 TCTTTTTTT
1 TCTTTTTTT
10066137 TCTTTTTTT
1 TCTTTTTTT
*
10066146 CCTTCTTTTT
1 TCTT-TTTTT
10066156 TCCTTCTCTTTT
1 T-CTT-T-TTTT
*
10066168 TCTTCTTTT
1 TCTTTTTTT
10066177 TCTTTTCTTT
1 TCTTTT-TTT
10066187 T-TTTTTT
1 TCTTTTTT
10066194 CTGCTGGGCC
Statistics
Matches: 49, Mismatches: 4, Indels: 9
0.79 0.06 0.15
Matches are distributed among these distances:
8 2 0.04
9 25 0.51
10 9 0.18
11 8 0.16
12 5 0.10
ACGTcount: A:0.00, C:0.20, G:0.00, T:0.80
Consensus pattern (9 bp):
TCTTTTTTT
Found at i:10066193 original size:11 final size:11
Alignment explanation
Indices: 10066130--10066195 Score: 73
Period size: 11 Copynumber: 6.0 Consensus size: 11
10066120 ATTGAACCTC
10066130 TTTTTT-TTCT
1 TTTTTTCTTCT
10066140 TTTTTTCCTTCT
1 TTTTTT-CTTCT
*
10066152 TTTTTCCTTCT
1 TTTTTTCTTCT
*
10066163 CTTTTTCTTCT
1 TTTTTTCTTCT
10066174 TTTTCTT-TTCT
1 TTTT-TTCTTCT
*
10066185 TTTTTTTTTCT
1 TTTTTTCTTCT
10066196 GCTGGGCCAA
Statistics
Matches: 48, Mismatches: 4, Indels: 7
0.81 0.07 0.12
Matches are distributed among these distances:
10 8 0.17
11 29 0.60
12 11 0.23
ACGTcount: A:0.00, C:0.20, G:0.00, T:0.80
Consensus pattern (11 bp):
TTTTTTCTTCT
Found at i:10066489 original size:3 final size:3
Alignment explanation
Indices: 10066483--10066528 Score: 58
Period size: 3 Copynumber: 15.0 Consensus size: 3
10066473 TTTTCTTTCT
*
10066483 TTC TTC TTC CTC TT- TTC TTC TTCC TTC TTC TTCC TTC TTC TTC TTC
1 TTC TTC TTC TTC TTC TTC TTC TT-C TTC TTC TT-C TTC TTC TTC TTC
10066529 AAAGTCTAGC
Statistics
Matches: 38, Mismatches: 2, Indels: 6
0.83 0.04 0.13
Matches are distributed among these distances:
2 2 0.05
3 30 0.79
4 6 0.16
ACGTcount: A:0.00, C:0.37, G:0.00, T:0.63
Consensus pattern (3 bp):
TTC
Found at i:10066498 original size:24 final size:24
Alignment explanation
Indices: 10066483--10066528 Score: 76
Period size: 24 Copynumber: 2.0 Consensus size: 24
10066473 TTTTCTTTCT
10066483 TTCTTCTTCCTCTTTTCTTCTTCC
1 TTCTTCTTCCTCTTTTCTTCTTCC
*
10066507 TTCTTCTTCCT-TCTTCTTCTTC
1 TTCTTCTTCCTCTTTTCTTCTTC
10066529 AAAGTCTAGC
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
23 10 0.48
24 11 0.52
ACGTcount: A:0.00, C:0.37, G:0.00, T:0.63
Consensus pattern (24 bp):
TTCTTCTTCCTCTTTTCTTCTTCC
Found at i:10066512 original size:10 final size:10
Alignment explanation
Indices: 10066497--10066525 Score: 58
Period size: 10 Copynumber: 2.9 Consensus size: 10
10066487 TCTTCCTCTT
10066497 TTCTTCTTCC
1 TTCTTCTTCC
10066507 TTCTTCTTCC
1 TTCTTCTTCC
10066517 TTCTTCTTC
1 TTCTTCTTC
10066526 TTCAAAGTCT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 19 1.00
ACGTcount: A:0.00, C:0.38, G:0.00, T:0.62
Consensus pattern (10 bp):
TTCTTCTTCC
Found at i:10066513 original size:13 final size:13
Alignment explanation
Indices: 10066483--10066528 Score: 62
Period size: 13 Copynumber: 3.7 Consensus size: 13
10066473 TTTTCTTTCT
10066483 TTCTTCTTCC-TC
1 TTCTTCTTCCTTC
10066495 TT-TTCTT-CTTCC
1 TTCTTCTTCCTT-C
10066507 TTCTTCTTCCTTC
1 TTCTTCTTCCTTC
10066520 TTCTTCTTC
1 TTCTTCTTC
10066529 AAAGTCTAGC
Statistics
Matches: 30, Mismatches: 0, Indels: 7
0.81 0.00 0.19
Matches are distributed among these distances:
10 1 0.03
11 6 0.20
12 5 0.17
13 15 0.50
14 3 0.10
ACGTcount: A:0.00, C:0.37, G:0.00, T:0.63
Consensus pattern (13 bp):
TTCTTCTTCCTTC
Found at i:10066929 original size:29 final size:29
Alignment explanation
Indices: 10066896--10067012 Score: 94
Period size: 30 Copynumber: 3.9 Consensus size: 29
10066886 TGTAATTTTT
*
10066896 AGAAAATTTAGGATTAAAATGAAATTTAA
1 AGAAAATTTAGGGTTAAAATGAAATTTAA
* * *
10066925 TGAAAGTTTAGGGGTCT-AAGTGAAATTTAA
1 AGAAAATTTA-GGGT-TAAAATGAAATTTAA
* *
10066955 AGAAATTTTAAGGGTCAAAATGAAATTT-A
1 AGAAAATTT-AGGGTTAAAATGAAATTTAA
* * *
10066984 GGAAAAGTTTAGGGGTCAAAATGCAATTT
1 AGAAAA-TTTA-GGGTTAAAATGAAATTT
10067013 TTATTTTTTT
Statistics
Matches: 71, Mismatches: 11, Indels: 11
0.76 0.12 0.12
Matches are distributed among these distances:
29 14 0.20
30 55 0.77
31 2 0.03
ACGTcount: A:0.44, C:0.03, G:0.21, T:0.31
Consensus pattern (29 bp):
AGAAAATTTAGGGTTAAAATGAAATTTAA
Found at i:10066951 original size:30 final size:30
Alignment explanation
Indices: 10066911--10067012 Score: 125
Period size: 30 Copynumber: 3.4 Consensus size: 30
10066901 ATTTAGGATT
*
10066911 AAAATGAAATTTAATGAAAGTTTAGGGGTC
1 AAAATGAAATTTAAAGAAAGTTTAGGGGTC
* * * *
10066941 TAAGTGAAATTTAAAGAAATTTTAAGGGTC
1 AAAATGAAATTTAAAGAAAGTTTAGGGGTC
*
10066971 AAAATGAAATTT-AGGAAAAGTTTAGGGGTC
1 AAAATGAAATTTAAAG-AAAGTTTAGGGGTC
*
10067001 AAAATGCAATTT
1 AAAATGAAATTT
10067013 TTATTTTTTT
Statistics
Matches: 60, Mismatches: 11, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
29 2 0.03
30 58 0.97
ACGTcount: A:0.44, C:0.04, G:0.22, T:0.30
Consensus pattern (30 bp):
AAAATGAAATTTAAAGAAAGTTTAGGGGTC
Found at i:10070368 original size:14 final size:15
Alignment explanation
Indices: 10070340--10070368 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
10070330 TTAACATTCT
10070340 CCTTTAAATATTTTA
1 CCTTTAAATATTTTA
10070355 CCTTTAAA-ATTTTA
1 CCTTTAAATATTTTA
10070369 AAAATTACTT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 6 0.43
15 8 0.57
ACGTcount: A:0.34, C:0.14, G:0.00, T:0.52
Consensus pattern (15 bp):
CCTTTAAATATTTTA
Found at i:10076657 original size:29 final size:29
Alignment explanation
Indices: 10076593--10076657 Score: 80
Period size: 29 Copynumber: 2.3 Consensus size: 29
10076583 TTATTGTAGA
10076593 TTTTAT-TTTTAAATTTTTTAATGAATTT
1 TTTTATATTTTAAATTTTTTAATGAATTT
* * *
10076621 GTTCATATTTTATAATTTTTTGA-GAATTT
1 TTTTATATTTTA-AATTTTTTAATGAATTT
10076650 TTTTATAT
1 TTTTATAT
10076658 GAAATTTTCA
Statistics
Matches: 30, Mismatches: 5, Indels: 3
0.79 0.13 0.08
Matches are distributed among these distances:
28 4 0.13
29 17 0.57
30 9 0.30
ACGTcount: A:0.28, C:0.02, G:0.06, T:0.65
Consensus pattern (29 bp):
TTTTATATTTTAAATTTTTTAATGAATTT
Found at i:10076708 original size:25 final size:24
Alignment explanation
Indices: 10076631--10076700 Score: 79
Period size: 25 Copynumber: 2.8 Consensus size: 24
10076621 GTTCATATTT
*
10076631 TATAATTTTTTGAGAATT-TTTTTA
1 TATAATTTTTT-AAAATTATTTTTA
* *
10076655 TATGAAATTTTCAAAACTTATTTTTA
1 TAT-AATTTTTTAAAA-TTATTTTTA
10076681 TATAATTTTTTAAAATTATT
1 TATAATTTTTTAAAATTATT
10076701 ATATATATTT
Statistics
Matches: 38, Mismatches: 5, Indels: 6
0.78 0.10 0.12
Matches are distributed among these distances:
24 11 0.29
25 18 0.47
26 9 0.24
ACGTcount: A:0.36, C:0.03, G:0.04, T:0.57
Consensus pattern (24 bp):
TATAATTTTTTAAAATTATTTTTA
Found at i:10076962 original size:22 final size:22
Alignment explanation
Indices: 10076934--10076978 Score: 81
Period size: 22 Copynumber: 2.0 Consensus size: 22
10076924 TATCACTTCA
10076934 AATATGGATAGCCAAAAAAATT
1 AATATGGATAGCCAAAAAAATT
*
10076956 AATATGGATAGCCAAAAGAATT
1 AATATGGATAGCCAAAAAAATT
10076978 A
1 A
10076979 TCTTCACCCT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.53, C:0.09, G:0.16, T:0.22
Consensus pattern (22 bp):
AATATGGATAGCCAAAAAAATT
Found at i:10077445 original size:21 final size:21
Alignment explanation
Indices: 10077420--10077464 Score: 90
Period size: 21 Copynumber: 2.1 Consensus size: 21
10077410 AAATGCAGCT
10077420 GCTGATTGCTTGGCAAAAGGA
1 GCTGATTGCTTGGCAAAAGGA
10077441 GCTGATTGCTTGGCAAAAGGA
1 GCTGATTGCTTGGCAAAAGGA
10077462 GCT
1 GCT
10077465 TTAACTTCTA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.27, C:0.16, G:0.33, T:0.24
Consensus pattern (21 bp):
GCTGATTGCTTGGCAAAAGGA
Found at i:10089106 original size:15 final size:16
Alignment explanation
Indices: 10089086--10089116 Score: 55
Period size: 15 Copynumber: 2.0 Consensus size: 16
10089076 TAGGTTTAGG
10089086 TTTTCTTTT-ATTTTA
1 TTTTCTTTTCATTTTA
10089101 TTTTCTTTTCATTTTA
1 TTTTCTTTTCATTTTA
10089117 AGTTTAGGTT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 9 0.60
16 6 0.40
ACGTcount: A:0.13, C:0.10, G:0.00, T:0.77
Consensus pattern (16 bp):
TTTTCTTTTCATTTTA
Found at i:10090440 original size:6 final size:6
Alignment explanation
Indices: 10090413--10090453 Score: 55
Period size: 6 Copynumber: 6.5 Consensus size: 6
10090403 TTCCAAATGA
*
10090413 TTTCAT TTCTCCAT TTTTAT TTTCAT TTTCAT TTTCAT TTT
1 TTTCAT TT-T-CAT TTTCAT TTTCAT TTTCAT TTTCAT TTT
10090454 GGAGAAAACC
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
6 24 0.77
7 2 0.06
8 5 0.16
ACGTcount: A:0.15, C:0.17, G:0.00, T:0.68
Consensus pattern (6 bp):
TTTCAT
Found at i:10090472 original size:69 final size:70
Alignment explanation
Indices: 10090362--10090495 Score: 179
Period size: 69 Copynumber: 1.9 Consensus size: 70
10090352 AAACGAATTC
10090362 ATTTCTCATTTTCATTTCTATTTGGAGAAAACTACATTCATTTCCAAATGATTTC-ATTTCTCCA
1 ATTTCTCATTTTCATTTCTATTTGGAGAAAACTACATTCATTTCCAAATGATTTCTATTTCTCCA
10090426 TTTTT
66 TTTTT
* *
10090431 ATTT-TCATTTTCATTT-TCATTTTGGAGAAAACCTTA-A-TCATTTTCAAATGTTTTCTATTTC
1 ATTTCTCATTTTCATTTCT-A-TTTGGAGAAAA-C-TACATTCATTTCCAAATGATTTCTATTTC
10090492 TCCA
62 TCCA
10090496 CTTCACCATT
Statistics
Matches: 58, Mismatches: 2, Indels: 9
0.84 0.03 0.13
Matches are distributed among these distances:
67 1 0.02
68 13 0.22
69 31 0.53
70 11 0.19
71 2 0.03
ACGTcount: A:0.26, C:0.18, G:0.06, T:0.50
Consensus pattern (70 bp):
ATTTCTCATTTTCATTTCTATTTGGAGAAAACTACATTCATTTCCAAATGATTTCTATTTCTCCA
TTTTT
Done.