Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A06
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 115140250
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2234201 characters in sequence are not A, C, G, or T
File 42 of 345
Found at i:11997667 original size:27 final size:26
Alignment explanation
Indices: 11997624--11997734 Score: 150
Period size: 27 Copynumber: 4.2 Consensus size: 26
11997614 AGGAAGCGTC
* * *
11997624 CTGGTGGCTATGGCACAATTATCTGAT
1 CTGGTGGCTCTGCCAC-ATTATCTGTT
11997651 CTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTCTGCCACAT-TATCTGTT
11997678 CTGGTGGCTCTGCCACAATTATCTGTT
1 CTGGTGGCTCTGCCAC-ATTATCTGTT
* *
11997705 CTGGTGACTCTGTCACATTATCTGTT
1 CTGGTGGCTCTGCCACATTATCTGTT
11997731 CTGG
1 CTGG
11997735 CAGCCATGCT
Statistics
Matches: 77, Mismatches: 5, Indels: 5
0.89 0.06 0.06
Matches are distributed among these distances:
26 16 0.21
27 59 0.77
28 2 0.03
ACGTcount: A:0.16, C:0.23, G:0.23, T:0.37
Consensus pattern (26 bp):
CTGGTGGCTCTGCCACATTATCTGTT
Found at i:11997682 original size:54 final size:53
Alignment explanation
Indices: 11997624--11997734 Score: 168
Period size: 54 Copynumber: 2.1 Consensus size: 53
11997614 AGGAAGCGTC
* *
11997624 CTGGTGGCTATGGCACAATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTATGCCACAATTATCTGATCTGGTGACTCTGCCACAT-TATCTGTT
* * *
11997678 CTGGTGGCTCTGCCACAATTATCTGTTCTGGTGACTCTGTCACATTATCTGTT
1 CTGGTGGCTATGCCACAATTATCTGATCTGGTGACTCTGCCACATTATCTGTT
11997731 CTGG
1 CTGG
11997735 CAGCCATGCT
Statistics
Matches: 52, Mismatches: 5, Indels: 1
0.90 0.09 0.02
Matches are distributed among these distances:
53 12 0.23
54 40 0.77
ACGTcount: A:0.16, C:0.23, G:0.23, T:0.37
Consensus pattern (53 bp):
CTGGTGGCTATGCCACAATTATCTGATCTGGTGACTCTGCCACATTATCTGTT
Found at i:12001009 original size:23 final size:18
Alignment explanation
Indices: 12000955--12001028 Score: 105
Period size: 18 Copynumber: 4.1 Consensus size: 18
12000945 CCCATTTCAA
*
12000955 TAACATTAATCAGTGCAG
1 TAACAGTAATCAGTGCAG
12000973 TAACAGTAATCAGTGCAG
1 TAACAGTAATCAGTGCAG
* *
12000991 TAACCA-TGATCAATGCAG
1 TAA-CAGTAATCAGTGCAG
12001009 TAACAGTAATCAGTGCAG
1 TAACAGTAATCAGTGCAG
12001027 TA
1 TA
12001029 TGCAAGCAGA
Statistics
Matches: 49, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
17 2 0.04
18 45 0.92
19 2 0.04
ACGTcount: A:0.39, C:0.18, G:0.19, T:0.24
Consensus pattern (18 bp):
TAACAGTAATCAGTGCAG
Found at i:12001381 original size:27 final size:27
Alignment explanation
Indices: 12001354--12001496 Score: 171
Period size: 27 Copynumber: 5.3 Consensus size: 27
12001344 TTTACTTTAC
* *
12001354 AAGGGTATTACAGTCATTTTACCCTAC
1 AAGGGTATTTCAGTCATTTTACCCTAT
*
12001381 AAGGGTACTTTCAGTCATTTTACCTTAT
1 AAGGGTA-TTTCAGTCATTTTACCCTAT
* *
12001409 -GGAGGTATTTCAATCATTTTACCCTAT
1 AAG-GGTATTTCAGTCATTTTACCCTAT
* *
12001436 GAGGGTATTTCGGTCATTTTACCCTAT
1 AAGGGTATTTCAGTCATTTTACCCTAT
* * *
12001463 GAGGGTATTTCGGTCATTTTATCCTAT
1 AAGGGTATTTCAGTCATTTTACCCTAT
12001490 AAGGGTA
1 AAGGGTA
12001497 AAACAGTCAT
Statistics
Matches: 102, Mismatches: 11, Indels: 6
0.86 0.09 0.05
Matches are distributed among these distances:
27 80 0.78
28 22 0.22
ACGTcount: A:0.24, C:0.17, G:0.19, T:0.39
Consensus pattern (27 bp):
AAGGGTATTTCAGTCATTTTACCCTAT
Found at i:12001473 original size:54 final size:55
Alignment explanation
Indices: 12001355--12001496 Score: 189
Period size: 54 Copynumber: 2.6 Consensus size: 55
12001345 TTACTTTACA
* * *
12001355 AGGGTATTACAGTCATTTTACCCTACAAGGGTACTTTCAGTCATTTTACCTTATG
1 AGGGTATTTCAGTCATTTTACCCTATAAGGGTACTTTCAGTCATTTTACCCTATG
* * *
12001410 -GAGGTATTTCAATCATTTTACCCTATGAGGGTA-TTTCGGTCATTTTACCCTATG
1 AG-GGTATTTCAGTCATTTTACCCTATAAGGGTACTTTCAGTCATTTTACCCTATG
* *
12001464 AGGGTATTTCGGTCATTTTATCCTATAAGGGTA
1 AGGGTATTTCAGTCATTTTACCCTATAAGGGTA
12001497 AAACAGTCAT
Statistics
Matches: 75, Mismatches: 10, Indels: 5
0.83 0.11 0.06
Matches are distributed among these distances:
54 47 0.63
55 28 0.37
ACGTcount: A:0.24, C:0.18, G:0.19, T:0.39
Consensus pattern (55 bp):
AGGGTATTTCAGTCATTTTACCCTATAAGGGTACTTTCAGTCATTTTACCCTATG
Found at i:12004400 original size:37 final size:37
Alignment explanation
Indices: 12004349--12004422 Score: 130
Period size: 37 Copynumber: 2.0 Consensus size: 37
12004339 AATTTGATCC
*
12004349 CTAATGTAGTAAAGTTAACAAATAAGCCAAACTAACT
1 CTAATGTAGCAAAGTTAACAAATAAGCCAAACTAACT
*
12004386 CTAATGTAGCAAAGTTAACAAATAAGTCAAACTAACT
1 CTAATGTAGCAAAGTTAACAAATAAGCCAAACTAACT
12004423 TGATAATCAT
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 35 1.00
ACGTcount: A:0.49, C:0.16, G:0.11, T:0.24
Consensus pattern (37 bp):
CTAATGTAGCAAAGTTAACAAATAAGCCAAACTAACT
Found at i:12006092 original size:18 final size:19
Alignment explanation
Indices: 12006052--12006095 Score: 54
Period size: 18 Copynumber: 2.3 Consensus size: 19
12006042 TAAAAAATGA
*
12006052 TTTCTGAAAAATAATTTATT
1 TTTCT-AAAAATAATTTACT
*
12006072 TTTCTAAAAATGA-TTACT
1 TTTCTAAAAATAATTTACT
12006090 TTTCTA
1 TTTCTA
12006096 TTGTTTAGAT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
18 10 0.45
19 7 0.32
20 5 0.23
ACGTcount: A:0.36, C:0.09, G:0.05, T:0.50
Consensus pattern (19 bp):
TTTCTAAAAATAATTTACT
Found at i:12007554 original size:28 final size:28
Alignment explanation
Indices: 12007521--12007581 Score: 113
Period size: 28 Copynumber: 2.2 Consensus size: 28
12007511 CAAGGAAGAA
*
12007521 CAAACCCGAAAGTGGAACTCAAAGAGGG
1 CAAACCCGAAAGTGGAACTCAAAGAGAG
12007549 CAAACCCGAAAGTGGAACTCAAAGAGAG
1 CAAACCCGAAAGTGGAACTCAAAGAGAG
12007577 CAAAC
1 CAAAC
12007582 TGAAAACCCA
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
28 32 1.00
ACGTcount: A:0.46, C:0.23, G:0.25, T:0.07
Consensus pattern (28 bp):
CAAACCCGAAAGTGGAACTCAAAGAGAG
Found at i:12008910 original size:6 final size:7
Alignment explanation
Indices: 12008889--12008968 Score: 54
Period size: 8 Copynumber: 10.3 Consensus size: 7
12008879 AAGAGAAGAT
12008889 GAAGAACG
1 GAAGAA-G
12008897 GAAGAAG
1 GAAGAAG
*
12008904 GAAAAGGAAT
1 G--AA-GAAG
12008914 GAAGAACG
1 GAAGAA-G
12008922 GAAGAAG
1 GAAGAAG
*
12008929 GAAAAGGAAT
1 G--AA-GAAG
12008939 GAAGAACG
1 GAAGAA-G
12008947 GAAGAAG
1 GAAGAAG
12008954 GAAGAA-
1 GAAGAAG
12008960 GAAGAAG
1 GAAGAAG
12008967 GA
1 GA
12008969 GCTTACCTGA
Statistics
Matches: 59, Mismatches: 4, Indels: 19
0.72 0.05 0.23
Matches are distributed among these distances:
6 6 0.10
7 19 0.32
8 22 0.37
9 4 0.07
10 8 0.14
ACGTcount: A:0.56, C:0.04, G:0.38, T:0.03
Consensus pattern (7 bp):
GAAGAAG
Found at i:12008917 original size:25 final size:25
Alignment explanation
Indices: 12008887--12008956 Score: 140
Period size: 25 Copynumber: 2.8 Consensus size: 25
12008877 AGAAGAGAAG
12008887 ATGAAGAACGGAAGAAGGAAAAGGA
1 ATGAAGAACGGAAGAAGGAAAAGGA
12008912 ATGAAGAACGGAAGAAGGAAAAGGA
1 ATGAAGAACGGAAGAAGGAAAAGGA
12008937 ATGAAGAACGGAAGAAGGAA
1 ATGAAGAACGGAAGAAGGAA
12008957 GAAGAAGAAG
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 45 1.00
ACGTcount: A:0.56, C:0.04, G:0.36, T:0.04
Consensus pattern (25 bp):
ATGAAGAACGGAAGAAGGAAAAGGA
Found at i:12010393 original size:21 final size:21
Alignment explanation
Indices: 12010361--12010408 Score: 62
Period size: 21 Copynumber: 2.3 Consensus size: 21
12010351 CTTTTCAGGA
*
12010361 TCTTCCTCCTCTTCCTCATTCT
1 TCTTCTTCCTCTTCCTCA-TCT
*
12010383 T-TTCTTCCTCTTCTTCATCT
1 TCTTCTTCCTCTTCCTCATCT
12010403 TCTTCT
1 TCTTCT
12010409 GGAGGATCGT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
20 4 0.17
21 18 0.78
22 1 0.04
ACGTcount: A:0.04, C:0.40, G:0.00, T:0.56
Consensus pattern (21 bp):
TCTTCTTCCTCTTCCTCATCT
Found at i:12014361 original size:20 final size:20
Alignment explanation
Indices: 12014336--12014381 Score: 83
Period size: 20 Copynumber: 2.3 Consensus size: 20
12014326 TGTAAAACTT
12014336 GATTGGAATTTAAGTTAATG
1 GATTGGAATTTAAGTTAATG
*
12014356 GATTGGAATTTAGGTTAATG
1 GATTGGAATTTAAGTTAATG
12014376 GATTGG
1 GATTGG
12014382 GGCCACTTTT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.30, C:0.00, G:0.30, T:0.39
Consensus pattern (20 bp):
GATTGGAATTTAAGTTAATG
Found at i:12017562 original size:23 final size:24
Alignment explanation
Indices: 12017532--12017577 Score: 67
Period size: 24 Copynumber: 2.0 Consensus size: 24
12017522 AGAACTTTTA
* *
12017532 ATCAGGAA-GCTCACGAAGAGCCT
1 ATCAGGAATACTCACAAAGAGCCT
12017555 ATCAGGAATACTCACAAAGAGCC
1 ATCAGGAATACTCACAAAGAGCC
12017578 ATGTAACAGG
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
23 8 0.40
24 12 0.60
ACGTcount: A:0.39, C:0.26, G:0.22, T:0.13
Consensus pattern (24 bp):
ATCAGGAATACTCACAAAGAGCCT
Found at i:12021056 original size:39 final size:40
Alignment explanation
Indices: 12020979--12021085 Score: 119
Period size: 40 Copynumber: 2.7 Consensus size: 40
12020969 TAGCTCCTCG
* * *
12020979 TTCAAGTGCCTTCGGGACATAGCCCGG-TTATAGTAACTCA
1 TTCAA-TGCCTTCGGGACTTAACCCGGATTATAGAAACTCA
* *
12021019 TTCAATGCCTTCGGGACTTAACCCGGATTTTA-AAACTCG
1 TTCAATGCCTTCGGGACTTAACCCGGATTATAGAAACTCA
**
12021058 CACGAATGCCTTCGGGACTTAACCCGGA
1 TTC-AATGCCTTCGGGACTTAACCCGGA
12021086 ATTAGTATCT
Statistics
Matches: 58, Mismatches: 7, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
39 25 0.43
40 33 0.57
ACGTcount: A:0.25, C:0.27, G:0.21, T:0.26
Consensus pattern (40 bp):
TTCAATGCCTTCGGGACTTAACCCGGATTATAGAAACTCA
Found at i:12021084 original size:79 final size:79
Alignment explanation
Indices: 12020985--12021151 Score: 187
Period size: 79 Copynumber: 2.1 Consensus size: 79
12020975 CTCGTTCAAG
* * ** * *
12020985 TGCCTTCGGGACATAGCCCGG-TTATAGTAACTCATTC-AATGCCTTCGGGACTTAACCCGGATT
1 TGCCTTCGGGACATAACCCGGAAT-TAGTAACTCACACAAAGGCCTTC-GGACTTAACCCGGA-A
*
12021048 TTAA-AACTCGCACGAA
63 TTAATAACTCGCACAAA
* * *
12021064 TGCCTTCGGGACTTAACCCGGAATTAGTATCTCGCACAAAGGCCTTCGGACTTAACCCGGAATTA
1 TGCCTTCGGGACATAACCCGGAATTAGTAACTCACACAAAGGCCTTCGGACTTAACCCGGAATTA
12021129 ATAACTCGCACAAA
66 ATAACTCGCACAAA
*
12021143 TACCTTCGG
1 TGCCTTCGG
12021152 ATCTTAGTCC
Statistics
Matches: 74, Mismatches: 11, Indels: 6
0.81 0.12 0.07
Matches are distributed among these distances:
78 4 0.05
79 61 0.82
80 9 0.12
ACGTcount: A:0.28, C:0.28, G:0.20, T:0.25
Consensus pattern (79 bp):
TGCCTTCGGGACATAACCCGGAATTAGTAACTCACACAAAGGCCTTCGGACTTAACCCGGAATTA
ATAACTCGCACAAA
Found at i:12021152 original size:39 final size:40
Alignment explanation
Indices: 12021022--12021151 Score: 183
Period size: 40 Copynumber: 3.3 Consensus size: 40
12021012 TAACTCATTC
* *
12021022 AATGCCTTCGGGACTTAACCCGGATTTTAA-AACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGA-ATTAATAACTCGCACA
* *
12021062 AATGCCTTCGGGACTTAACCCGGAATTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
*
12021102 AAGGCCTTC-GGACTTAACCCGGAATTAATAACTCGCACA
1 AATGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
*
12021141 AATACCTTCGG
1 AATGCCTTCGG
12021152 ATCTTAGTCC
Statistics
Matches: 79, Mismatches: 9, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
39 38 0.48
40 41 0.52
ACGTcount: A:0.29, C:0.28, G:0.19, T:0.24
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
Found at i:12021188 original size:79 final size:79
Alignment explanation
Indices: 12021025--12021204 Score: 190
Period size: 79 Copynumber: 2.3 Consensus size: 79
12021015 CTCATTCAAT
* * * *
12021025 GCCTTCGGGACTTAACCCGGATTTTAAAACTCGCACGAATGCCTTCGGGACTTAACCCGGAATTA
1 GCCTTC-GGACTTAACCCGGATATTAAAACTCGCACAAATACCTTCGGGACTTAACCCAGAATTA
*
12021090 GTATCTCGCACAAAG
65 GTATCTAGCACAAAG
**
12021105 GCCTTCGGACTTAACCCGGA-ATTAATAACTCGCACAAATACCTTC-GGATCTTAGTCCAG-ATA
1 GCCTTCGGACTTAACCCGGATATTAA-AACTCGCACAAATACCTTCGGGA-CTTAACCCAGAAT-
12021167 TAGTCA-CTTAGCACAAA-
63 TAGT-ATC-TAGCACAAAG
*
12021184 GCCTTCGAGACTTAGCCCGGA
1 GCCTTCG-GACTTAACCCGGA
12021205 CAGCATTCAA
Statistics
Matches: 86, Mismatches: 8, Indels: 12
0.81 0.08 0.11
Matches are distributed among these distances:
78 9 0.10
79 50 0.58
80 27 0.31
ACGTcount: A:0.29, C:0.28, G:0.19, T:0.24
Consensus pattern (79 bp):
GCCTTCGGACTTAACCCGGATATTAAAACTCGCACAAATACCTTCGGGACTTAACCCAGAATTAG
TATCTAGCACAAAG
Found at i:12023077 original size:40 final size:40
Alignment explanation
Indices: 12022979--12023241 Score: 316
Period size: 40 Copynumber: 6.6 Consensus size: 40
12022969 TCCTCGTTCA
* * * * *
12022979 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* *
12023018 AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
*
12023058 ACTGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
12023098 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * *
12023138 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * * * * *
12023178 AAGGCCTTC-GGATCTTAATCCGGATATATTCACTTAGCAC-
1 AATGCCTTCGGGA-CTTAACCCGGATTTAATAAC-TCGCACG
* *
12023218 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
12023242 CAGCATTCAA
Statistics
Matches: 198, Mismatches: 22, Indels: 7
0.87 0.10 0.03
Matches are distributed among these distances:
39 37 0.19
40 153 0.77
41 8 0.04
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
Found at i:12030501 original size:39 final size:40
Alignment explanation
Indices: 12030424--12030570 Score: 120
Period size: 40 Copynumber: 3.7 Consensus size: 40
12030414 TAGCTCCTCG
* * *
12030424 TTCAAGTGCCTTCGGGACATAGCCCGG-TTATAGTAACTCA
1 TTCAA-TGCCTTCGGGACTTAACCCGGATTATAGAAACTCA
* *
12030464 TTCAATGCCTTCGGGACTTAACCCGGATTTTA-AAACTCG
1 TTCAATGCCTTCGGGACTTAACCCGGATTATAGAAACTCA
** * * * *
12030503 CACGAATGCCTTCGGGACTTAACCCGGAAT-TAGTATCTCG
1 TTC-AATGCCTTCGGGACTTAACCCGGATTATAGAAACTCA
** *
12030543 CACAAAGGCCTTCGGGACTTAACCCGGA
1 TTC-AATGCCTTCGGGACTTAACCCGGA
12030571 ATTAATAACT
Statistics
Matches: 92, Mismatches: 12, Indels: 6
0.84 0.11 0.05
Matches are distributed among these distances:
39 27 0.29
40 65 0.71
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
TTCAATGCCTTCGGGACTTAACCCGGATTATAGAAACTCA
Found at i:12030581 original size:80 final size:80
Alignment explanation
Indices: 12030470--12030650 Score: 219
Period size: 80 Copynumber: 2.3 Consensus size: 80
12030460 CTCATTCAAT
* * *
12030470 GCCTTCGGGACTTAACCCGGATTTTAAAACTCGCACGAATGCCTTCGGGA-CTTAACCCGGA-AT
1 GCCTTCGGGACTTAACCCGGATATTAAAACTCGCACAAATACCTTC-GGATCTTAACCCGGATA-
*
12030533 TAGT-A-TCTCGCACAAA
64 TAGTCACT-TAGCACAAA
**
12030549 GGCCTTCGGGACTTAACCCGGA-ATTAATAACTCGCACAAATACCTTCGGATCTTAGTCCGGATA
1 -GCCTTCGGGACTTAACCCGGATATTAA-AACTCGCACAAATACCTTCGGATCTTAACCCGGATA
12030613 TAGTCACTTAGCACAAA
64 TAGTCACTTAGCACAAA
*
12030630 GCCTTCGGGACTTAGCCCGGA
1 GCCTTCGGGACTTAACCCGGA
12030651 CAGCATTCAA
Statistics
Matches: 89, Mismatches: 7, Indels: 10
0.84 0.07 0.09
Matches are distributed among these distances:
79 7 0.08
80 71 0.80
81 10 0.11
82 1 0.01
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.24
Consensus pattern (80 bp):
GCCTTCGGGACTTAACCCGGATATTAAAACTCGCACAAATACCTTCGGATCTTAACCCGGATATA
GTCACTTAGCACAAA
Found at i:12030610 original size:40 final size:40
Alignment explanation
Indices: 12030467--12030650 Score: 196
Period size: 40 Copynumber: 4.6 Consensus size: 40
12030457 TAACTCATTC
* *
12030467 AATGCCTTCGGGACTTAACCCGGATTTTAA-AACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGA-ATTAATAACTCGCACA
* *
12030507 AATGCCTTCGGGACTTAACCCGGAATTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
*
12030547 AAGGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
1 AATGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
* ** * * *
12030587 AATACCTTC-GGATCTTAGTCCGG-ATATAGTCACTTAGCACA
1 AATGCCTTCGGGA-CTTAACCCGGAAT-TAATAAC-TCGCACA
*
12030628 AA-GCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
12030651 CAGCATTCAA
Statistics
Matches: 122, Mismatches: 16, Indels: 11
0.82 0.11 0.07
Matches are distributed among these distances:
39 8 0.07
40 103 0.84
41 11 0.09
ACGTcount: A:0.28, C:0.27, G:0.21, T:0.24
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
Found at i:12033357 original size:21 final size:22
Alignment explanation
Indices: 12033340--12033395 Score: 66
Period size: 21 Copynumber: 2.7 Consensus size: 22
12033330 AGAAAATTCA
12033340 ATCAAAT-TAGAATTAAATAAG
1 ATCAAATATAGAATTAAATAAG
*
12033361 ATCAAATATAGAATTGAA-AAG
1 ATCAAATATAGAATTAAATAAG
12033382 ATTC-AATATA-AATT
1 A-TCAAATATAGAATT
12033396 TGATGTTGTT
Statistics
Matches: 32, Mismatches: 1, Indels: 5
0.84 0.03 0.13
Matches are distributed among these distances:
20 4 0.12
21 17 0.53
22 11 0.34
ACGTcount: A:0.55, C:0.05, G:0.09, T:0.30
Consensus pattern (22 bp):
ATCAAATATAGAATTAAATAAG
Found at i:12036086 original size:16 final size:16
Alignment explanation
Indices: 12036063--12036096 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 16
12036053 AATTTTAGAT
12036063 AAATAATTA-TTTAAC
1 AAATAATTAGTTTAAC
12036078 AAATAAATTAGTTTAAC
1 AAAT-AATTAGTTTAAC
12036095 AA
1 AA
12036097 TCGAATCATG
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 4 0.24
16 5 0.29
17 8 0.47
ACGTcount: A:0.56, C:0.06, G:0.03, T:0.35
Consensus pattern (16 bp):
AAATAATTAGTTTAAC
Found at i:12036550 original size:20 final size:21
Alignment explanation
Indices: 12036514--12036568 Score: 62
Period size: 21 Copynumber: 2.8 Consensus size: 21
12036504 ACGTTCAGGC
*
12036514 TTTATG-GG-TCAAAATA-GG
1 TTTATGTGGCTCAACATAGGG
12036532 TTTATGTGGCTCAACATAGGG
1 TTTATGTGGCTCAACATAGGG
* *
12036553 TTTTTGTGGCTTAACA
1 TTTATGTGGCTCAACA
12036569 CAAGGCTACG
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
18 6 0.19
19 2 0.06
20 7 0.23
21 16 0.52
ACGTcount: A:0.25, C:0.11, G:0.25, T:0.38
Consensus pattern (21 bp):
TTTATGTGGCTCAACATAGGG
Found at i:12048507 original size:14 final size:14
Alignment explanation
Indices: 12048471--12048514 Score: 52
Period size: 14 Copynumber: 3.0 Consensus size: 14
12048461 GTACAATATA
12048471 TATATGTTATAATAAT
1 TATATG-TAT-ATAAT
* *
12048487 AAAATGTATATAAT
1 TATATGTATATAAT
12048501 TATATGTATATAAT
1 TATATGTATATAAT
12048515 AAAAGTTATG
Statistics
Matches: 24, Mismatches: 4, Indels: 2
0.80 0.13 0.07
Matches are distributed among these distances:
14 17 0.71
15 3 0.12
16 4 0.17
ACGTcount: A:0.48, C:0.00, G:0.07, T:0.45
Consensus pattern (14 bp):
TATATGTATATAAT
Found at i:12053016 original size:45 final size:44
Alignment explanation
Indices: 12052952--12053079 Score: 195
Period size: 45 Copynumber: 2.9 Consensus size: 44
12052942 TGTGCAGTAC
12052952 TATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGATAT
1 TATTCGGG-CTTTGAGCCTAGCAGGCTATAATGCCGGTGAGATAT
*
12052997 TATTCGGGTCTTTGAGCCTAGCAGGCTATAATACCGGTGAGATAT
1 TATTCGGG-CTTTGAGCCTAGCAGGCTATAATGCCGGTGAGATAT
* * *
12053042 TATTCGGGCCTCGAGCCTAGCAGGCGA-AATGCCGGTGA
1 TATTCGGGCTTTGAGCCTAGCAGGCTATAATGCCGGTGA
12053080 AGGAATTCGG
Statistics
Matches: 77, Mismatches: 6, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
43 10 0.13
44 16 0.21
45 51 0.66
ACGTcount: A:0.23, C:0.21, G:0.30, T:0.27
Consensus pattern (44 bp):
TATTCGGGCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGATAT
Found at i:12056905 original size:13 final size:13
Alignment explanation
Indices: 12056887--12056911 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
12056877 TATATGATAT
12056887 GTGTGAAAATTTC
1 GTGTGAAAATTTC
12056900 GTGTGAAAATTT
1 GTGTGAAAATTT
12056912 TATCGTTTGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.04, G:0.24, T:0.40
Consensus pattern (13 bp):
GTGTGAAAATTTC
Found at i:12058170 original size:23 final size:23
Alignment explanation
Indices: 12058144--12058187 Score: 61
Period size: 23 Copynumber: 1.9 Consensus size: 23
12058134 TATATCCATA
* *
12058144 CCAAAATCATGCCAAATCATAAG
1 CCAAAATCATACCAAAACATAAG
*
12058167 CCAAAGTCATACCAAAACATA
1 CCAAAATCATACCAAAACATA
12058188 TGTTTCATAA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 18 1.00
ACGTcount: A:0.50, C:0.27, G:0.07, T:0.16
Consensus pattern (23 bp):
CCAAAATCATACCAAAACATAAG
Found at i:12058994 original size:42 final size:42
Alignment explanation
Indices: 12058886--12059055 Score: 153
Period size: 43 Copynumber: 4.0 Consensus size: 42
12058876 AGCTCGTACA
* * * * * * *
12058886 ATGCCAACGTCCCAGACGTAGTCTTACATGTAATTAAATATCA
1 ATGCCAATGTCCCAGACATGGTCTTACACGAAATCAAATAT-G
* *
12058929 ATGCCACTGTCCCAGACAGGGTCTTACACGAAATCAAATATG
1 ATGCCAATGTCCCAGACATGGTCTTACACGAAATCAAATATG
*** *
12058971 ATGTTGATGTCCCAGACATGGTCTTACACGTAAATCTCAAAT-CG
1 ATGCCAATGTCCCAGACATGGTCTTACACG-AAA--TCAAATATG
* * *
12059015 ATGCCAATGTCTCAGACGTGGTCTTACACGAAATCACATAT
1 ATGCCAATGTCCCAGACATGGTCTTACACGAAATCAAATAT
12059056 TGGAATCCTA
Statistics
Matches: 101, Mismatches: 22, Indels: 9
0.77 0.17 0.07
Matches are distributed among these distances:
41 5 0.05
42 25 0.25
43 39 0.39
44 26 0.26
45 6 0.06
ACGTcount: A:0.32, C:0.24, G:0.17, T:0.26
Consensus pattern (42 bp):
ATGCCAATGTCCCAGACATGGTCTTACACGAAATCAAATATG
Found at i:12059039 original size:86 final size:85
Alignment explanation
Indices: 12058894--12059055 Score: 211
Period size: 86 Copynumber: 1.9 Consensus size: 85
12058884 CAATGCCAAC
* * *
12058894 GTCCCAGACGTAGTCTTACATGTAATTAAATATCAATGCCACTGTCCCAGACAGGGTCTTACACG
1 GTCCCAGACATAGTCTTACACGTAATTAAATATCAATGCCAATGTCCCAGACAGGGTCTTACACG
12058959 AAATCAAATATGATGTTGAT
66 AAATCAAATATGATGTTGAT
* * * *
12058979 GTCCCAGACATGGTCTTACACGTAAATCTCAA-ATCGATGCCAATGTCTCAGAC-GTGGTCTTAC
1 GTCCCAGACATAGTCTTACACGT-AAT-TAAATATCAATGCCAATGTCCCAGACAG-GGTCTTAC
*
12059042 ACGAAATCACATAT
63 ACGAAATCAAATAT
12059056 TGGAATCCTA
Statistics
Matches: 66, Mismatches: 8, Indels: 5
0.84 0.10 0.06
Matches are distributed among these distances:
85 21 0.32
86 42 0.64
87 3 0.05
ACGTcount: A:0.32, C:0.23, G:0.17, T:0.27
Consensus pattern (85 bp):
GTCCCAGACATAGTCTTACACGTAATTAAATATCAATGCCAATGTCCCAGACAGGGTCTTACACG
AAATCAAATATGATGTTGAT
Found at i:12059069 original size:44 final size:41
Alignment explanation
Indices: 12058936--12059069 Score: 124
Period size: 44 Copynumber: 3.1 Consensus size: 41
12058926 TCAATGCCAC
* * **
12058936 TGTCCCAGACAGGGTCTTACACGAAATCAAATATGATGTTGA
1 TGTCCCAGACATGGTCTTACACGAAATCACATATGATCCT-A
* * *
12058978 TGTCCCAGACATGGTCTTACACGTAAATCTCAAATCGATGCCAA
1 TGTCCCAGACATGGTCTTACACG-AAATCACATAT-GAT-CCTA
* *
12059022 TGTCTCAGACGTGGTCTTACACGAAATCACATATTGGAATCCTA
1 TGTCCCAGACATGGTCTTACACGAAATCACATA-T-G-ATCCTA
12059066 TGTC
1 TGTC
12059070 ATGACATATG
Statistics
Matches: 74, Mismatches: 13, Indels: 8
0.78 0.14 0.08
Matches are distributed among these distances:
42 22 0.30
43 16 0.22
44 34 0.46
45 2 0.03
ACGTcount: A:0.31, C:0.23, G:0.19, T:0.28
Consensus pattern (41 bp):
TGTCCCAGACATGGTCTTACACGAAATCACATATGATCCTA
Found at i:12062573 original size:27 final size:27
Alignment explanation
Indices: 12062534--12062596 Score: 81
Period size: 27 Copynumber: 2.3 Consensus size: 27
12062524 GAAAAATAGT
* *
12062534 CATTTTACCCTACAGGGGTATGTCGAC
1 CATTTTACACTACAAGGGTATGTCGAC
* *
12062561 CATTTTACACTACAAGGGTATTTCGAT
1 CATTTTACACTACAAGGGTATGTCGAC
*
12062588 AATTTTACA
1 CATTTTACA
12062597 AATCGGGGGT
Statistics
Matches: 31, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 31 1.00
ACGTcount: A:0.29, C:0.21, G:0.16, T:0.35
Consensus pattern (27 bp):
CATTTTACACTACAAGGGTATGTCGAC
Found at i:12062620 original size:54 final size:54
Alignment explanation
Indices: 12062575--12062915 Score: 429
Period size: 54 Copynumber: 6.3 Consensus size: 54
12062565 TTACACTACA
*
12062575 AGGGTATTTCGA-TAATTTTACAAATCGGGGGTGTTTCGGTAATTTTACAAATCG
1 AGGGTATTT-GAGTAATTTTACAAATCGAGGGTGTTTCGGTAATTTTACAAATCG
* * * * * *
12062629 AGGGTATTTTAGTAATTTTACAAACCAAGGGTATTTCGATAATTTTACAAATCA
1 AGGGTATTTGAGTAATTTTACAAATCGAGGGTGTTTCGGTAATTTTACAAATCG
* *
12062683 AGGGTATTTTAGTAATTTTACAAATCAAGGGTGTTTCGGTAATTTTACAAATCG
1 AGGGTATTTGAGTAATTTTACAAATCGAGGGTGTTTCGGTAATTTTACAAATCG
* * * *
12062737 AGGGTGTTTTGA-TAATTTTACAAATTGAGGGTGTTTCGGTAATTTCACAAATTG
1 AGGGT-ATTTGAGTAATTTTACAAATCGAGGGTGTTTCGGTAATTTTACAAATCG
* * ** *
12062791 GGGGTATTTTG-GTAATTTTACAAATCGAGGGTATTTTAGTAATTTCAC-AATCG
1 AGGGTA-TTTGAGTAATTTTACAAATCGAGGGTGTTTCGGTAATTTTACAAATCG
* * *
12062844 AGGGTATTTTAGTAATTTTACAAATCGAGGGTGTTTTGGTAATTTCACAAATCG
1 AGGGTATTTGAGTAATTTTACAAATCGAGGGTGTTTCGGTAATTTTACAAATCG
*
12062898 AGGGTATTTCAGTAATTT
1 AGGGTATTTGAGTAATTT
12062916 CTCTTTATTA
Statistics
Matches: 252, Mismatches: 29, Indels: 12
0.86 0.10 0.04
Matches are distributed among these distances:
52 3 0.01
53 45 0.18
54 200 0.79
55 4 0.02
ACGTcount: A:0.30, C:0.09, G:0.21, T:0.39
Consensus pattern (54 bp):
AGGGTATTTGAGTAATTTTACAAATCGAGGGTGTTTCGGTAATTTTACAAATCG
Found at i:12062670 original size:81 final size:81
Alignment explanation
Indices: 12062575--12062915 Score: 427
Period size: 81 Copynumber: 4.2 Consensus size: 81
12062565 TTACACTACA
* * * *
12062575 AGGGTATTTCGATAATTTTACAAATCGGGGGTGTTTCGGTAATTTTACAAATCGAGGGTATTTTA
1 AGGGTATTTCGATAATTTTACAAATCGAGGGTATTTCAGTAATTTTACAAATCGAGGGTATTTTG
* *
12062640 GTAATTTTACAAACCA
66 GTAATTTTACAAATCG
* * * * *
12062656 AGGGTATTTCGATAATTTTACAAATCAAGGGTATTTTAGTAATTTTACAAATCAAGGGTGTTTCG
1 AGGGTATTTCGATAATTTTACAAATCGAGGGTATTTCAGTAATTTTACAAATCGAGGGTATTTTG
12062721 GTAATTTTACAAATCG
66 GTAATTTTACAAATCG
* * * * * * * *
12062737 AGGGTGTTTTGATAATTTTACAAATTGAGGGTGTTTCGGTAATTTCACAAATTGGGGGTATTTTG
1 AGGGTATTTCGATAATTTTACAAATCGAGGGTATTTCAGTAATTTTACAAATCGAGGGTATTTTG
12062802 GTAATTTTACAAATCG
66 GTAATTTTACAAATCG
* * * *
12062818 AGGGTATTT-TAGTAATTTCAC-AATCGAGGGTATTTTAGTAATTTTACAAATCGAGGGTGTTTT
1 AGGGTATTTCGA-TAATTTTACAAATCGAGGGTATTTCAGTAATTTTACAAATCGAGGGTATTTT
*
12062881 GGTAATTTCACAAATCG
65 GGTAATTTTACAAATCG
12062898 AGGGTATTTC-AGTAATTT
1 AGGGTATTTCGA-TAATTT
12062916 CTCTTTATTA
Statistics
Matches: 222, Mismatches: 36, Indels: 5
0.84 0.14 0.02
Matches are distributed among these distances:
80 68 0.31
81 154 0.69
ACGTcount: A:0.30, C:0.09, G:0.21, T:0.39
Consensus pattern (81 bp):
AGGGTATTTCGATAATTTTACAAATCGAGGGTATTTCAGTAATTTTACAAATCGAGGGTATTTTG
GTAATTTTACAAATCG
Found at i:12062916 original size:27 final size:27
Alignment explanation
Indices: 12062575--12062915 Score: 375
Period size: 27 Copynumber: 12.7 Consensus size: 27
12062565 TTACACTACA
12062575 AGGGTATTTC-GATAATTTTACAAATCG
1 AGGGTATTTCAG-TAATTTTACAAATCG
* * *
12062602 GGGGTGTTTCGGTAATTTTACAAATCG
1 AGGGTATTTCAGTAATTTTACAAATCG
* * *
12062629 AGGGTATTTTAGTAATTTTACAAACCA
1 AGGGTATTTCAGTAATTTTACAAATCG
*
12062656 AGGGTATTTC-GATAATTTTACAAATCA
1 AGGGTATTTCAG-TAATTTTACAAATCG
* *
12062683 AGGGTATTTTAGTAATTTTACAAATCA
1 AGGGTATTTCAGTAATTTTACAAATCG
* *
12062710 AGGGTGTTTCGGTAATTTTACAAATCG
1 AGGGTATTTCAGTAATTTTACAAATCG
* * *
12062737 AGGGTGTTT-TGATAATTTTACAAATTG
1 AGGGTATTTCAG-TAATTTTACAAATCG
* * * *
12062764 AGGGTGTTTCGGTAATTTCACAAATTG
1 AGGGTATTTCAGTAATTTTACAAATCG
* **
12062791 GGGGTATTTTGGTAATTTTACAAATCG
1 AGGGTATTTCAGTAATTTTACAAATCG
* *
12062818 AGGGTATTTTAGTAATTTCAC-AATCG
1 AGGGTATTTCAGTAATTTTACAAATCG
*
12062844 AGGGTATTTTAGTAATTTTACAAATCG
1 AGGGTATTTCAGTAATTTTACAAATCG
* ** *
12062871 AGGGTGTTTTGGTAATTTCACAAATCG
1 AGGGTATTTCAGTAATTTTACAAATCG
12062898 AGGGTATTTCAGTAATTT
1 AGGGTATTTCAGTAATTT
12062916 CTCTTTATTA
Statistics
Matches: 274, Mismatches: 34, Indels: 12
0.86 0.11 0.04
Matches are distributed among these distances:
26 27 0.10
27 244 0.89
28 3 0.01
ACGTcount: A:0.30, C:0.09, G:0.21, T:0.39
Consensus pattern (27 bp):
AGGGTATTTCAGTAATTTTACAAATCG
Found at i:12063276 original size:28 final size:28
Alignment explanation
Indices: 12063215--12063295 Score: 108
Period size: 28 Copynumber: 2.9 Consensus size: 28
12063205 ATCCACACTT
* *
12063215 ATTCATTTGGCCCCTTTAGGCCCAATCTC
1 ATTCATTTGG-CCCATTAGGCCCAATCAC
* *
12063244 GTTCATTTGGCCCATCAGGCCCAATCAC
1 ATTCATTTGGCCCATTAGGCCCAATCAC
*
12063272 ATTCATATGGCCCATTAGGCCCAA
1 ATTCATTTGGCCCATTAGGCCCAA
12063296 CTACTTCCCA
Statistics
Matches: 45, Mismatches: 7, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
28 36 0.80
29 9 0.20
ACGTcount: A:0.22, C:0.33, G:0.16, T:0.28
Consensus pattern (28 bp):
ATTCATTTGGCCCATTAGGCCCAATCAC
Found at i:12068072 original size:56 final size:56
Alignment explanation
Indices: 12068006--12068308 Score: 439
Period size: 56 Copynumber: 5.4 Consensus size: 56
12067996 TCCTAGACAG
* * * *
12068006 GGTCTTACTCGTAAACACATATCAAAATCACCTATCGATGCCAACATATTAAACGT
1 GGTCTTACTCGTACACACATATCAGAATCACATATCGATGCCAACGTATTAAACGT
* *
12068062 GGTCTTACTCGTACACACATATCAGAATCACATATTGATGCCAACGTGTTAAACGT
1 GGTCTTACTCGTACACACATATCAGAATCACATATCGATGCCAACGTATTAAACGT
* * *
12068118 GGTCTTACTTGCACACACATATC-GAAATCACATATCGATGCCAACGTATTAAACAT
1 GGTCTTACTCGTACACACATATCAG-AATCACATATCGATGCCAACGTATTAAACGT
* * *
12068174 GGTCTTACTCATACACAGATATCAGAATCACATATCGATGCCAACGTATTAAACAT
1 GGTCTTACTCGTACACACATATCAGAATCACATATCGATGCCAACGTATTAAACGT
* * *
12068230 AGTCTTACTCGTACACACATATCAGAATCACATATCGATTCCAACATATTAAACGT
1 GGTCTTACTCGTACACACATATCAGAATCACATATCGATGCCAACGTATTAAACGT
12068286 GGTCTTACTCGTA-ATCACATATC
1 GGTCTTACTCGTACA-CACATATC
12068309 GATGCCAACA
Statistics
Matches: 222, Mismatches: 22, Indels: 6
0.89 0.09 0.02
Matches are distributed among these distances:
55 2 0.01
56 219 0.99
57 1 0.00
ACGTcount: A:0.35, C:0.24, G:0.12, T:0.28
Consensus pattern (56 bp):
GGTCTTACTCGTACACACATATCAGAATCACATATCGATGCCAACGTATTAAACGT
Found at i:12068303 original size:43 final size:43
Alignment explanation
Indices: 12068255--12068438 Score: 230
Period size: 43 Copynumber: 4.3 Consensus size: 43
12068245 CACATATCAG
* ** *
12068255 AATCACATATCGATTCCAACATATTAAACGTGGTCTTAC-TCGT
1 AATCACATATCGATGCCAACATCCTAGACGTGGTCTTACAT-GT
* *
12068298 AATCACATATCGATGCCAACAT-CTCAGATGTGGTTTTACATGT
1 AATCACATATCGATGCCAACATCCT-AGACGTGGTCTTACATGT
* * *
12068341 AATCACATATCGATGCTAACATCCGAGACGTGGTCTTACACGT
1 AATCACATATCGATGCCAACATCCTAGACGTGGTCTTACATGT
* *
12068384 -ATCTCATATCGATGCCAACGTCCTAGACGTGGTCTTACATGT
1 AATCACATATCGATGCCAACATCCTAGACGTGGTCTTACATGT
12068426 AATCACATATCGA
1 AATCACATATCGA
12068439 AAATCCTATG
Statistics
Matches: 121, Mismatches: 16, Indels: 8
0.83 0.11 0.06
Matches are distributed among these distances:
42 38 0.31
43 81 0.67
44 2 0.02
ACGTcount: A:0.30, C:0.24, G:0.16, T:0.30
Consensus pattern (43 bp):
AATCACATATCGATGCCAACATCCTAGACGTGGTCTTACATGT
Found at i:12068428 original size:85 final size:86
Alignment explanation
Indices: 12068255--12068438 Score: 246
Period size: 85 Copynumber: 2.2 Consensus size: 86
12068245 CACATATCAG
* ** *
12068255 AATCACATATCGATTCCAACATATTAAACGTGGTCTTACTCGTAATCACATATCGATGCCAACAT
1 AATCACATATCGATGCCAACATACGAAACGTGGTCTTACACGTAATCACATATCGATGCCAACAT
* *
12068320 CTCAGATGTGGTTTTACATGT
66 CTCAGACGTGGTCTTACATGT
* * * * *
12068341 AATCACATATCGATGCTAACATCCGAGACGTGGTCTTACACGT-ATCTCATATCGATGCCAACGT
1 AATCACATATCGATGCCAACATACGAAACGTGGTCTTACACGTAATCACATATCGATGCCAACAT
12068405 C-CTAGACGTGGTCTTACATGT
66 CTC-AGACGTGGTCTTACATGT
12068426 AATCACATATCGA
1 AATCACATATCGA
12068439 AAATCCTATG
Statistics
Matches: 86, Mismatches: 11, Indels: 3
0.86 0.11 0.03
Matches are distributed among these distances:
84 1 0.01
85 49 0.57
86 36 0.42
ACGTcount: A:0.30, C:0.24, G:0.16, T:0.30
Consensus pattern (86 bp):
AATCACATATCGATGCCAACATACGAAACGTGGTCTTACACGTAATCACATATCGATGCCAACAT
CTCAGACGTGGTCTTACATGT
Found at i:12070331 original size:27 final size:27
Alignment explanation
Indices: 12070274--12070331 Score: 80
Period size: 27 Copynumber: 2.1 Consensus size: 27
12070264 ACCCATAATC
* * *
12070274 GATAAAATGACTATTATGCCTCTGTGT
1 GATAAAATGACTATTATGCCCCTATGA
*
12070301 GATAAAATGACTGTTATGCCCCTATGA
1 GATAAAATGACTATTATGCCCCTATGA
12070328 GATA
1 GATA
12070332 TAAGATTATA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.33, C:0.16, G:0.19, T:0.33
Consensus pattern (27 bp):
GATAAAATGACTATTATGCCCCTATGA
Found at i:12070966 original size:18 final size:19
Alignment explanation
Indices: 12070932--12070973 Score: 61
Period size: 18 Copynumber: 2.3 Consensus size: 19
12070922 ATAAAGCCTC
*
12070932 TTTGG-ATTTTATTTTTAA
1 TTTGGTATTTTATATTTAA
12070950 TTTGGTATTTTA-ATTTAA
1 TTTGGTATTTTATATTTAA
12070968 TTTGGT
1 TTTGGT
12070974 TATTACTGCT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
18 16 0.73
19 6 0.27
ACGTcount: A:0.21, C:0.00, G:0.14, T:0.64
Consensus pattern (19 bp):
TTTGGTATTTTATATTTAA
Found at i:12073919 original size:22 final size:22
Alignment explanation
Indices: 12073891--12073955 Score: 69
Period size: 22 Copynumber: 3.0 Consensus size: 22
12073881 GCAAATACGT
*
12073891 TTGGCACACAGCCATAATCAGG
1 TTGGCACAAAGCCATAATCAGG
* *
12073913 TTGGCACAGAGCCAT-ATGTAGG
1 TTGGCACAAAGCCATAAT-CAGG
**
12073935 TTGGTGCAAAGCCATAATCAG
1 TTGGCACAAAGCCATAATCAG
12073956 AATAATTGGC
Statistics
Matches: 35, Mismatches: 6, Indels: 4
0.78 0.13 0.09
Matches are distributed among these distances:
21 2 0.06
22 31 0.89
23 2 0.06
ACGTcount: A:0.31, C:0.22, G:0.26, T:0.22
Consensus pattern (22 bp):
TTGGCACAAAGCCATAATCAGG
Found at i:12074155 original size:41 final size:41
Alignment explanation
Indices: 12074098--12074219 Score: 208
Period size: 41 Copynumber: 3.0 Consensus size: 41
12074088 AAAAGCCACT
*
12074098 GGTGGATCCACGGTCGTCAAGCAACCATGCGATCCTTAATC
1 GGTGGATCCACGGTCGTCAAGCAACCATGCGATCCTCAATC
12074139 GGTGGATCCACGGTCGTCAAGCAACCATGCGATCCTCAATC
1 GGTGGATCCACGGTCGTCAAGCAACCATGCGATCCTCAATC
* * *
12074180 GGTGGATCCACGATCGTTAAGCAACCATGCAATCCTCAAT
1 GGTGGATCCACGGTCGTCAAGCAACCATGCGATCCTCAAT
12074220 TTCTTCCTCC
Statistics
Matches: 77, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
41 77 1.00
ACGTcount: A:0.26, C:0.30, G:0.23, T:0.21
Consensus pattern (41 bp):
GGTGGATCCACGGTCGTCAAGCAACCATGCGATCCTCAATC
Found at i:12074500 original size:27 final size:27
Alignment explanation
Indices: 12074470--12074521 Score: 68
Period size: 27 Copynumber: 1.9 Consensus size: 27
12074460 AGGTGTTTTG
12074470 GTAAATCTACAAACCAAGGGTATTTCA
1 GTAAATCTACAAACCAAGGGTATTTCA
* * * *
12074497 GTAATTTTGCAAACCAATGGTATTT
1 GTAAATCTACAAACCAAGGGTATTT
12074522 TTGTAATTTT
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 21 1.00
ACGTcount: A:0.37, C:0.15, G:0.15, T:0.33
Consensus pattern (27 bp):
GTAAATCTACAAACCAAGGGTATTTCA
Found at i:12074527 original size:27 final size:27
Alignment explanation
Indices: 12074479--12074853 Score: 139
Period size: 27 Copynumber: 13.9 Consensus size: 27
12074469 GGTAAATCTA
12074479 CAAACCAAGGGTATTTCAGTAATTTTG
1 CAAACCAAGGGTATTTCAGTAATTTTG
* **
12074506 CAAACCAATGGTATTTTTGTAATTTTTG
1 CAAACCAAGGGTATTTCAGTAA-TTTTG
* *
12074534 -AAAGTCAAAGGTATTTCTA-TAATTTTG
1 CAAA-CCAAGGGTATTTC-AGTAATTTTG
* ** * * *
12074561 TAAATTAGGGGTATTTCTGTAATTTTT
1 CAAACCAAGGGTATTTCAGTAATTTTG
* * * *
12074588 CAAATCAAGGGTATCTCAATAATTTTC
1 CAAACCAAGGGTATTTCAGTAATTTTG
** * ** *
12074615 CAAATTAGGGGTATTTTGGTAATTTTA
1 CAAACCAAGGGTATTTCAGTAATTTTG
* * * *
12074642 CAAATCTAGGGTATTTCGGTAATTTTA
1 CAAACCAAGGGTATTTCAGTAATTTTG
** * * *
12074669 CAAGTCGAGGGTATTTCGGTAATTTTA
1 CAAACCAAGGGTATTTCAGTAATTTTG
*** * * ** **
12074696 CAGGTCGAGAGTATTTTGGTAATTTCA
1 CAAACCAAGGGTATTTCAGTAATTTTG
* * * *
12074723 CAAATCTAGGGTATTTCGGGAATTTT-
1 CAAACCAAGGGTATTTCAGTAATTTTG
** * *
12074749 CAAGTCGAGGGTATTTCAGTAATTTTA
1 CAAACCAAGGGTATTTCAGTAATTTTG
* ** * *
12074776 TAAACC-AGGGTTATTTTGGTAGTTTTA
1 CAAACCAAGGG-TATTTCAGTAATTTTG
* * * ** *
12074803 CTAATCGAGGGTATTTTGGTAATTTTA
1 CAAACCAAGGGTATTTCAGTAATTTTG
*
12074830 TAAACC-AGGGTTATTTCAGTAATT
1 CAAACCAAGGG-TATTTCAGTAATT
12074854 GTACCCTACA
Statistics
Matches: 277, Mismatches: 62, Indels: 18
0.78 0.17 0.05
Matches are distributed among these distances:
26 30 0.11
27 222 0.80
28 25 0.09
ACGTcount: A:0.30, C:0.10, G:0.20, T:0.41
Consensus pattern (27 bp):
CAAACCAAGGGTATTTCAGTAATTTTG
Found at i:12074546 original size:28 final size:27
Alignment explanation
Indices: 12074484--12074694 Score: 140
Period size: 27 Copynumber: 7.8 Consensus size: 27
12074474 ATCTACAAAC
* *
12074484 CAAGGGTATTTCAGTAA-TTTTGCAAAC
1 CAAGGGTATTTCTGTAATTTTTG-AAAT
* *
12074511 CAATGGTATTTTTGTAATTTTTGAAAGT
1 CAAGGGTATTTCTGTAATTTTTGAAA-T
* *
12074539 CAAAGGTATTTCTATAA-TTTTGTAAAT
1 CAAGGGTATTTCTGTAATTTTTG-AAAT
* * *
12074566 TAGGGGTATTTCTGTAATTTTTCAAAT
1 CAAGGGTATTTCTGTAATTTTTGAAAT
* ** **
12074593 CAAGGGTATCTCAATAATTTTCCAAAT
1 CAAGGGTATTTCTGTAATTTTTGAAAT
* * **
12074620 TAGGGGTATTT-TGGTAATTTTACAAAT
1 CAAGGGTATTTCT-GTAATTTTTGAAAT
* * ** *
12074647 CTAGGGTATTTCGGTAATTTTACAAGT
1 CAAGGGTATTTCTGTAATTTTTGAAAT
* *
12074674 CGAGGGTATTTCGGTAATTTT
1 CAAGGGTATTTCTGTAATTTT
12074695 ACAGGTCGAG
Statistics
Matches: 148, Mismatches: 30, Indels: 12
0.78 0.16 0.06
Matches are distributed among these distances:
27 122 0.82
28 26 0.18
ACGTcount: A:0.30, C:0.09, G:0.18, T:0.42
Consensus pattern (27 bp):
CAAGGGTATTTCTGTAATTTTTGAAAT
Found at i:12074664 original size:81 final size:81
Alignment explanation
Indices: 12074569--12074853 Score: 299
Period size: 81 Copynumber: 3.5 Consensus size: 81
12074559 TGTAAATTAG
* * * * * * *
12074569 GGGTATTTCTGTAATTTTTCAAATCAAGGGTATCTCAATAATTTTCCAAATTAGGGGTATTTTGG
1 GGGTATTTCGGTAATTTTTCAAGTCGAGGGTATTTCAGTAATTTTACAAACTAGGGGTATTTTGG
12074634 TAATTTTACAAATCTA
66 TAATTTTACAAATCTA
* * ** * *
12074650 GGGTATTTCGGTAATTTTACAAGTCGAGGGTATTTCGGTAATTTTAC-AGGTCGAGAGTATTTTG
1 GGGTATTTCGGTAATTTTTCAAGTCGAGGGTATTTCAGTAATTTTACAAACTAG-GGGTATTTTG
*
12074714 GTAATTTCACAAATCTA
65 GTAATTTTACAAATCTA
* * * *
12074731 GGGTATTTCGGGAA-TTTTCAAGTCGAGGGTATTTCAGTAATTTTATAAACCAGGGTTATTTTGG
1 GGGTATTTCGGTAATTTTTCAAGTCGAGGGTATTTCAGTAATTTTACAAACTAGGGGTATTTTGG
* * *
12074795 TAGTTTTACTAATCGA
66 TAATTTTACAAATCTA
* * *
12074811 GGGTATTTTGGTAATTTTAT-AA-ACCAGGGTTATTTCAGTAATT
1 GGGTATTTCGGTAATTTT-TCAAGTCGAGGG-TATTTCAGTAATT
12074854 GTACCCTACA
Statistics
Matches: 168, Mismatches: 31, Indels: 10
0.80 0.15 0.05
Matches are distributed among these distances:
80 70 0.42
81 97 0.58
82 1 0.01
ACGTcount: A:0.28, C:0.10, G:0.21, T:0.41
Consensus pattern (81 bp):
GGGTATTTCGGTAATTTTTCAAGTCGAGGGTATTTCAGTAATTTTACAAACTAGGGGTATTTTGG
TAATTTTACAAATCTA
Found at i:12074681 original size:54 final size:54
Alignment explanation
Indices: 12074465--12074829 Score: 272
Period size: 54 Copynumber: 6.8 Consensus size: 54
12074455 TACAAAGGTG
* * * * * * * * *
12074465 TTTTGGTAAATCTACAAACCAAGGGTATTTCAGTAATTTTGCAAACCAATGGTA
1 TTTTGGTAATTTTACAAATCGAGGGTATTTCGGTAATTTTACAAATCTAGGGTA
* ** * * ** **
12074519 TTTTTGTAATTTTTGAAAGTCAAAGGTATTTCTATAATTTTGTAAAT-TAGGGGTA
1 TTTTGGTAATTTTACAAA-TCGAGGGTATTTCGGTAATTTTACAAATCTA-GGGTA
* * * ** *
12074574 TTTCT-GTAATTTTTCAAATCAAGGGTATCTCAATAATTTTCCAAAT-TAGGGGTA
1 TTT-TGGTAATTTTACAAATCGAGGGTATTTCGGTAATTTTACAAATCTA-GGGTA
* * *
12074628 TTTTGGTAATTTTACAAATCTAGGGTATTTCGGTAATTTTACAAGTCGAGGGTA
1 TTTTGGTAATTTTACAAATCGAGGGTATTTCGGTAATTTTACAAATCTAGGGTA
* ** * * *
12074682 TTTCGGTAATTTTACAGGTCGAGAGTATTTTGGTAATTTCACAAATCTAGGGTA
1 TTTTGGTAATTTTACAAATCGAGGGTATTTCGGTAATTTTACAAATCTAGGGTA
* * * * * *
12074736 TTTCGGGAATTTT-CAAGTCGAGGGTATTTCAGTAATTTTATAAA-CCAGGGTTA
1 TTTTGGTAATTTTACAAATCGAGGGTATTTCGGTAATTTTACAAATCTAGGG-TA
* * *
12074789 TTTTGGTAGTTTTACTAATCGAGGGTATTTTGGTAATTTTA
1 TTTTGGTAATTTTACAAATCGAGGGTATTTCGGTAATTTTA
12074830 TAAACCAGGG
Statistics
Matches: 253, Mismatches: 51, Indels: 14
0.80 0.16 0.04
Matches are distributed among these distances:
52 5 0.02
53 38 0.15
54 167 0.66
55 42 0.17
56 1 0.00
ACGTcount: A:0.29, C:0.10, G:0.20, T:0.41
Consensus pattern (54 bp):
TTTTGGTAATTTTACAAATCGAGGGTATTTCGGTAATTTTACAAATCTAGGGTA
Found at i:12074802 original size:107 final size:107
Alignment explanation
Indices: 12074611--12074827 Score: 262
Period size: 107 Copynumber: 2.0 Consensus size: 107
12074601 TCTCAATAAT
* * * * * *
12074611 TTTCCAAATTAGGGGTATTTTGGTAATTTTACAAATCTAGGGTATTTCGGTAATTTTACAAGTCG
1 TTTCCAAATTAGGGGTATTTCGGGAATTTTACAAATCGAGGGTATTTCAGTAATTTTACAAGACC
*
12074676 AGGGTATTTCGGTAATTTTAC-AGGTCGAGAGTATTTTGGTAA
66 AGGGTATTTCGGTAATTTTACTA-ATCGAGAGTATTTTGGTAA
* *
12074718 TTTCACAAATCTA-GGGTATTTCGGGAATTTT-CAAGTCGAGGGTATTTCAGTAATTTTATAA-A
1 TTTC-CAAAT-TAGGGGTATTTCGGGAATTTTACAAATCGAGGGTATTTCAGTAATTTTACAAGA
* * *
12074780 CCAGGGTTATTTTGGTAGTTTTACTAATCGAGGGTATTTTGGTAA
64 CCAGGG-TATTTCGGTAATTTTACTAATCGAGAGTATTTTGGTAA
12074825 TTT
1 TTT
12074828 TATAAACCAG
Statistics
Matches: 94, Mismatches: 12, Indels: 8
0.82 0.11 0.07
Matches are distributed among these distances:
106 5 0.05
107 65 0.69
108 22 0.23
109 2 0.02
ACGTcount: A:0.27, C:0.10, G:0.23, T:0.41
Consensus pattern (107 bp):
TTTCCAAATTAGGGGTATTTCGGGAATTTTACAAATCGAGGGTATTTCAGTAATTTTACAAGACC
AGGGTATTTCGGTAATTTTACTAATCGAGAGTATTTTGGTAA
Found at i:12074869 original size:54 final size:53
Alignment explanation
Indices: 12074754--12074879 Score: 148
Period size: 54 Copynumber: 2.3 Consensus size: 53
12074744 ATTTTCAAGT
** * *
12074754 CGAGGGTATTTCAGTAATTTTATAAACCAGGGTTATTTTGGTAGTTTTACTAA
1 CGAGGGTATTTCAGTAATTTTATAAACCAGGGTTATTTCAGTAATTGTACTAA
**
12074807 TCGAGGGTATTTTGGTAATTTTATAAACCAGGGTTATTTCAGTAATTGTACCCT-A
1 -CGAGGGTATTTCAGTAATTTTATAAACCAGGGTTATTTCAGTAATTGTA--CTAA
12074862 C-AGGGGTATTTCAGTAAT
1 CGA-GGGTATTTCAGTAAT
12074880 ACTAGCTTAC
Statistics
Matches: 61, Mismatches: 8, Indels: 6
0.81 0.11 0.08
Matches are distributed among these distances:
53 1 0.02
54 57 0.93
55 1 0.02
56 2 0.03
ACGTcount: A:0.28, C:0.11, G:0.21, T:0.40
Consensus pattern (53 bp):
CGAGGGTATTTCAGTAATTTTATAAACCAGGGTTATTTCAGTAATTGTACTAA
Found at i:12075267 original size:69 final size:69
Alignment explanation
Indices: 12075156--12075295 Score: 280
Period size: 69 Copynumber: 2.0 Consensus size: 69
12075146 GAAGTCCACG
12075156 ATCACTAACCTTGGCATATCCTGCATTGAGTCTTAATCACTTTTTCCCGATGTGGGATTACTTTC
1 ATCACTAACCTTGGCATATCCTGCATTGAGTCTTAATCACTTTTTCCCGATGTGGGATTACTTTC
12075221 AACC
66 AACC
12075225 ATCACTAACCTTGGCATATCCTGCATTGAGTCTTAATCACTTTTTCCCGATGTGGGATTACTTTC
1 ATCACTAACCTTGGCATATCCTGCATTGAGTCTTAATCACTTTTTCCCGATGTGGGATTACTTTC
12075290 AACC
66 AACC
12075294 AT
1 AT
12075296 TAGGAAAATT
Statistics
Matches: 71, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
69 71 1.00
ACGTcount: A:0.24, C:0.26, G:0.14, T:0.36
Consensus pattern (69 bp):
ATCACTAACCTTGGCATATCCTGCATTGAGTCTTAATCACTTTTTCCCGATGTGGGATTACTTTC
AACC
Found at i:12080184 original size:40 final size:40
Alignment explanation
Indices: 12080107--12080370 Score: 372
Period size: 40 Copynumber: 6.5 Consensus size: 40
12080097 ACCCAAGTAT
* * *
12080107 CTTCGGGATTTAG-CCGGATATAG-CAACTCGCACAAATGT
1 CTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATGC
* *
12080146 CTTCGGGTCTTAGCCCGGATATAGTCACTAGCATAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
12080186 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
12080226 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
* *
12080266 CTTTGGGACTTAGCCCGGGTATAG-CAACTACTCGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTC-ACTA---GCACAAATGC
* * *
12080309 CTTCGGGACTTAGCCCGGATATAGTAACTTGCACAAATAC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
12080349 CTTCGGGACTTAGCCCGGATAT
1 CTTCGGGACTTAGCCCGGATAT
12080371 CATCCGAATA
Statistics
Matches: 204, Mismatches: 14, Indels: 13
0.88 0.06 0.06
Matches are distributed among these distances:
39 12 0.06
40 156 0.76
41 1 0.00
43 35 0.17
ACGTcount: A:0.27, C:0.26, G:0.23, T:0.25
Consensus pattern (40 bp):
CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
Found at i:12083747 original size:18 final size:18
Alignment explanation
Indices: 12083724--12083761 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 18
12083714 TCGTTGGTTT
12083724 AGTTGAAAGAGCTT-GTAA
1 AGTTG-AAGAGCTTAGTAA
*
12083742 AGTTGAAGATCTTAGTAA
1 AGTTGAAGAGCTTAGTAA
12083760 AG
1 AG
12083762 AAAAGAGGAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
17 7 0.39
18 11 0.61
ACGTcount: A:0.39, C:0.05, G:0.26, T:0.29
Consensus pattern (18 bp):
AGTTGAAGAGCTTAGTAA
Found at i:12092802 original size:12 final size:13
Alignment explanation
Indices: 12092766--12092803 Score: 51
Period size: 14 Copynumber: 2.9 Consensus size: 13
12092756 AAATATTTGA
12092766 CTTGTTCTTAATT
1 CTTGTTCTTAATT
*
12092779 ATGTGTTCTTAATT
1 CT-TGTTCTTAATT
12092793 CTTG-TCTTAAT
1 CTTGTTCTTAAT
12092804 ATTCCAGGAT
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
12 7 0.32
13 3 0.14
14 12 0.55
ACGTcount: A:0.18, C:0.13, G:0.11, T:0.58
Consensus pattern (13 bp):
CTTGTTCTTAATT
Found at i:12095128 original size:32 final size:32
Alignment explanation
Indices: 12095087--12095165 Score: 124
Period size: 32 Copynumber: 2.5 Consensus size: 32
12095077 TCACTAACAT
*
12095087 TTGGGCCTAGCCCA-ACTCAGAATCAATATCAG
1 TTGGGCCTAGCCCATA-TCAGAACCAATATCAG
*
12095119 TTGGGCCTAGCCCATATCAGAACCAATATTAG
1 TTGGGCCTAGCCCATATCAGAACCAATATCAG
12095151 TTGGGCCTAGCCCAT
1 TTGGGCCTAGCCCAT
12095166 TTCAATATCA
Statistics
Matches: 44, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
32 43 0.98
33 1 0.02
ACGTcount: A:0.28, C:0.28, G:0.20, T:0.24
Consensus pattern (32 bp):
TTGGGCCTAGCCCATATCAGAACCAATATCAG
Found at i:12095675 original size:19 final size:19
Alignment explanation
Indices: 12095618--12095681 Score: 94
Period size: 19 Copynumber: 3.4 Consensus size: 19
12095608 AGTGTAAATG
12095618 GGCCCAAGG-CCATTACTC
1 GGCCCAAGGCCCATTACTC
* *
12095636 GACACAAGGCCCATTACTC
1 GGCCCAAGGCCCATTACTC
12095655 GGCCCAAGGCCCATTACTC
1 GGCCCAAGGCCCATTACTC
*
12095674 GGTCCAAG
1 GGCCCAAG
12095682 TAGACCCACA
Statistics
Matches: 40, Mismatches: 5, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
18 7 0.17
19 33 0.82
ACGTcount: A:0.25, C:0.38, G:0.22, T:0.16
Consensus pattern (19 bp):
GGCCCAAGGCCCATTACTC
Found at i:12095811 original size:17 final size:17
Alignment explanation
Indices: 12095789--12095830 Score: 84
Period size: 17 Copynumber: 2.5 Consensus size: 17
12095779 TATCCGTGTG
12095789 GGGCCCACGAGCCCATT
1 GGGCCCACGAGCCCATT
12095806 GGGCCCACGAGCCCATT
1 GGGCCCACGAGCCCATT
12095823 GGGCCCAC
1 GGGCCCAC
12095831 AAGGACCATT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 25 1.00
ACGTcount: A:0.17, C:0.43, G:0.31, T:0.10
Consensus pattern (17 bp):
GGGCCCACGAGCCCATT
Found at i:12096673 original size:23 final size:23
Alignment explanation
Indices: 12096645--12096692 Score: 96
Period size: 23 Copynumber: 2.1 Consensus size: 23
12096635 AAGAAAAGAG
12096645 GTGCAGAAAGAAAAGAGAGACAA
1 GTGCAGAAAGAAAAGAGAGACAA
12096668 GTGCAGAAAGAAAAGAGAGACAA
1 GTGCAGAAAGAAAAGAGAGACAA
12096691 GT
1 GT
12096693 TATTCGGTCA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.54, C:0.08, G:0.31, T:0.06
Consensus pattern (23 bp):
GTGCAGAAAGAAAAGAGAGACAA
Found at i:12098140 original size:15 final size:15
Alignment explanation
Indices: 12098108--12098136 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
12098098 ATTTTTAGTG
12098108 TTTATTATGTGTGAA
1 TTTATTATGTGTGAA
12098123 TTTA-TATGTGTGAA
1 TTTATTATGTGTGAA
12098137 ATTTTCGTGA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 10 0.71
15 4 0.29
ACGTcount: A:0.28, C:0.00, G:0.21, T:0.52
Consensus pattern (15 bp):
TTTATTATGTGTGAA
Found at i:12099474 original size:43 final size:43
Alignment explanation
Indices: 12099409--12099755 Score: 432
Period size: 43 Copynumber: 8.1 Consensus size: 43
12099399 ATATATGTGA
12099409 CATCGATATGTGATTACGAGTAAGACCACGTCTGGGATGTTGG
1 CATCGATATGTGATTACGAGTAAGACCACGTCTGGGATGTTGG
* *
12099452 CATCGATATGTGATTACAAGTAAGACTACGTCTGGGATGTTGG
1 CATCGATATGTGATTACGAGTAAGACCACGTCTGGGATGTTGG
* * * *
12099495 CATCAATATGTGATTATGAGTAAGACCACATCTGGGACGTTGG
1 CATCGATATGTGATTACGAGTAAGACCACGTCTGGGATGTTGG
* * * *
12099538 CATCGATATGTAATTATGAATAAGACCACGTCTGGGACGTTGG
1 CATCGATATGTGATTACGAGTAAGACCACGTCTGGGATGTTGG
* * *
12099581 AATCGATATGTGATTACGTGTAAGACCACGTCTGGGACGTTGG
1 CATCGATATGTGATTACGAGTAAGACCACGTCTGGGATGTTGG
*
12099624 CATCGATATGTGATTACGTGTAAGACCACGTCTGGGATGTTGG
1 CATCGATATGTGATTACGAGTAAGACCACGTCTGGGATGTTGG
* * * *
12099667 GATCGATATGTGGTTACGTGTAAGA-CACTGTCTGGGACAG-TGG
1 CATCGATATGTGATTACGAGTAAGACCAC-GTCTGGGA-TGTTGG
** * *
12099710 CATCGATATAAGA-TA-GCATGTAAGACCACGTTTGGGATGTTAG
1 CATCGATATGTGATTACG-A-GTAAGACCACGTCTGGGATGTTGG
12099753 CAT
1 CAT
12099756 TGTACGATAT
Statistics
Matches: 268, Mismatches: 30, Indels: 12
0.86 0.10 0.04
Matches are distributed among these distances:
41 1 0.00
42 6 0.02
43 257 0.96
44 4 0.01
ACGTcount: A:0.27, C:0.16, G:0.29, T:0.29
Consensus pattern (43 bp):
CATCGATATGTGATTACGAGTAAGACCACGTCTGGGATGTTGG
Found at i:12108835 original size:13 final size:13
Alignment explanation
Indices: 12108813--12108845 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
12108803 AAGGGTTTGC
12108813 TTAT-TAAACTAA
1 TTATCTAAACTAA
12108825 TTATCTAAACTAA
1 TTATCTAAACTAA
*
12108838 TTAACTAA
1 TTATCTAA
12108846 TTTAATTAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 4 0.21
13 15 0.79
ACGTcount: A:0.48, C:0.12, G:0.00, T:0.39
Consensus pattern (13 bp):
TTATCTAAACTAA
Found at i:12115496 original size:20 final size:20
Alignment explanation
Indices: 12115456--12115508 Score: 65
Period size: 20 Copynumber: 2.6 Consensus size: 20
12115446 AATTGAAATG
12115456 AAAAGAA-AAATAAAAAGAAA
1 AAAAGAATAAA-AAAAAGAAA
*
12115476 AATAA-AATAAAAAAAATAAA
1 AA-AAGAATAAAAAAAAGAAA
12115496 AAAAGAATAAAAA
1 AAAAGAATAAAAA
12115509 GATAGGAGGA
Statistics
Matches: 29, Mismatches: 1, Indels: 6
0.81 0.03 0.17
Matches are distributed among these distances:
19 2 0.07
20 22 0.76
21 5 0.17
ACGTcount: A:0.85, C:0.00, G:0.06, T:0.09
Consensus pattern (20 bp):
AAAAGAATAAAAAAAAGAAA
Found at i:12126993 original size:30 final size:30
Alignment explanation
Indices: 12126959--12127019 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
12126949 TCCTTAACTC
12126959 AAACTTTGGAAAAATTACAATTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
* * * * *
12126989 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
12127019 A
1 A
12127020 GGCTCGGAAT
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.31, C:0.23, G:0.08, T:0.38
Consensus pattern (30 bp):
AAACTTTGGAAAAATTACAATTTTGCCCCT
Found at i:12134274 original size:46 final size:46
Alignment explanation
Indices: 12134221--12134396 Score: 165
Period size: 46 Copynumber: 3.8 Consensus size: 46
12134211 TGGTTGAGCA
*
12134221 TCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* * *** * * ** *
12134267 TCTGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTA-ACTAGGCA
1 TCCGAACTCATTGAGTTGAGTCCGAGTTC-ACTTATGGATGC-AAACG
* * * *
12134314 TCCGAGCTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* * *
12134360 CCCGAGCTCATTGAATTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGG
12134397 GCGGGTTACA
Statistics
Matches: 100, Mismatches: 27, Indels: 6
0.75 0.20 0.05
Matches are distributed among these distances:
46 67 0.67
47 33 0.33
ACGTcount: A:0.23, C:0.20, G:0.27, T:0.30
Consensus pattern (46 bp):
TCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
Found at i:12134379 original size:93 final size:93
Alignment explanation
Indices: 12134218--12134388 Score: 252
Period size: 93 Copynumber: 1.8 Consensus size: 93
12134208 GGATGGTTGA
* * * * *
12134218 GCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCTGAACTCGTTGAGT
1 GCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCATTGAAT
12134283 TGAGTCCGAGTTCGAGAGATGTAACTAG
66 TGAGTCCGAGTTCGAGAGATGTAACTAG
* * * * *
12134311 GCATCCGAGCTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACGCCCGAGCTCATTGAAT
1 GCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCATTGAAT
12134376 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
12134389 ACTTATGGGC
Statistics
Matches: 68, Mismatches: 10, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
93 68 1.00
ACGTcount: A:0.23, C:0.20, G:0.27, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCATTGAAT
TGAGTCCGAGTTCGAGAGATGTAACTAG
Found at i:12140482 original size:44 final size:41
Alignment explanation
Indices: 12140417--12140540 Score: 126
Period size: 44 Copynumber: 2.9 Consensus size: 41
12140407 GGTATGTGAT
* * *
12140417 TTTGTGTAAGACCACGTCTGGGACGTTGGTATCA-ATTTGAGA
1 TTTGTGTAAGACCATGTCTGGGACGTTGGCATCATATCT-A-A
*
12140459 TATATGTGTAAGACCATGTCTGGGACTTTGGCATCATATCTAA
1 T-T-TGTGTAAGACCATGTCTGGGACGTTGGCATCATATCTAA
*
12140502 TTTCGTGTAAGACCCTGTCTGGGACAG-TGGCATCGATAT
1 TTT-GTGTAAGACCATGTCTGGGAC-GTTGGCATC-ATAT
12140541 TTGATAACAT
Statistics
Matches: 70, Mismatches: 6, Indels: 11
0.80 0.07 0.13
Matches are distributed among these distances:
41 1 0.01
42 29 0.41
43 7 0.10
44 30 0.43
45 3 0.04
ACGTcount: A:0.24, C:0.17, G:0.26, T:0.33
Consensus pattern (41 bp):
TTTGTGTAAGACCATGTCTGGGACGTTGGCATCATATCTAA
Found at i:12140575 original size:42 final size:41
Alignment explanation
Indices: 12140465--12140576 Score: 116
Period size: 42 Copynumber: 2.7 Consensus size: 41
12140455 GAGATATATG
* ** *
12140465 TGTAAGACCATGTCTGGGACTTTGGCATCATATCTAATTTCG
1 TGTAAGACCATGTCTGGGA-TATGGCATCATATCTAATAACA
* * * *
12140507 TGTAAGACCCTGTCTGGGACAGTGGCATCGATATTTGATAACA
1 TGTAAGACCATGTCTGGGATA-TGGCATC-ATATCTAATAACA
*
12140550 TGTAAGACCATATCTGGGATATGGCAT
1 TGTAAGACCATGTCTGGGATATGGCAT
12140577 TGTACGAGTT
Statistics
Matches: 57, Mismatches: 11, Indels: 4
0.79 0.15 0.06
Matches are distributed among these distances:
42 31 0.54
43 26 0.46
ACGTcount: A:0.27, C:0.18, G:0.24, T:0.31
Consensus pattern (41 bp):
TGTAAGACCATGTCTGGGATATGGCATCATATCTAATAACA
Found at i:12158939 original size:39 final size:39
Alignment explanation
Indices: 12158879--12159019 Score: 135
Period size: 39 Copynumber: 3.6 Consensus size: 39
12158869 CTATGGAAAT
* * *
12158879 TTAAACCCGG-TATAATACCAGCTCG-AAGCCAGCGGGA-C
1 TTAAGCCCGGATATAATTCCAGCACGTAA-CCAGC-GGACC
* * *
12158917 TTTAGCCCGGATATATTTCCAGCACGTAACCTGCGGACC
1 TTAAGCCCGGATATAATTCCAGCACGTAACCAGCGGACC
* * * *
12158956 TTAAGTCCGGATATAATTCCAGCACATAGCCTGCGGACC
1 TTAAGCCCGGATATAATTCCAGCACGTAACCAGCGGACC
* *
12158995 CTAAGTCCGGATATAATTCCAGCAC
1 TTAAGCCCGGATATAATTCCAGCAC
12159020 ATAGCTTACG
Statistics
Matches: 88, Mismatches: 12, Indels: 5
0.84 0.11 0.05
Matches are distributed among these distances:
38 11 0.12
39 75 0.85
40 2 0.02
ACGTcount: A:0.28, C:0.29, G:0.21, T:0.22
Consensus pattern (39 bp):
TTAAGCCCGGATATAATTCCAGCACGTAACCAGCGGACC
Found at i:12159020 original size:39 final size:39
Alignment explanation
Indices: 12158923--12159046 Score: 194
Period size: 39 Copynumber: 3.2 Consensus size: 39
12158913 GGACTTTAGC
* * * *
12158923 CCGGATATATTTCCAGCACGTAACCTGCGGACCTTAAGT
1 CCGGATATAATTCCAGCACATAGCCTGCGGACCCTAAGT
12158962 CCGGATATAATTCCAGCACATAGCCTGCGGACCCTAAGT
1 CCGGATATAATTCCAGCACATAGCCTGCGGACCCTAAGT
* *
12159001 CCGGATATAATTCCAGCACATAGCTTACGGACCCTAAGT
1 CCGGATATAATTCCAGCACATAGCCTGCGGACCCTAAGT
12159040 CCGGATA
1 CCGGATA
12159047 AACATCACTG
Statistics
Matches: 79, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
39 79 1.00
ACGTcount: A:0.28, C:0.29, G:0.20, T:0.23
Consensus pattern (39 bp):
CCGGATATAATTCCAGCACATAGCCTGCGGACCCTAAGT
Found at i:12167058 original size:39 final size:39
Alignment explanation
Indices: 12167029--12167138 Score: 193
Period size: 39 Copynumber: 2.8 Consensus size: 39
12167019 ACATATTTTT
* *
12167029 AGCACGTAGCCTGCGGACCTTAAGTCCGGATATAATTCC
1 AGCACATAGCCTGCGGACCCTAAGTCCGGATATAATTCC
12167068 AGCACATAGCCTGCGGACCCTAAGTCCGGATATAATTCC
1 AGCACATAGCCTGCGGACCCTAAGTCCGGATATAATTCC
*
12167107 AGCACATAGCCTACGGACCCTAAGTCCGGATA
1 AGCACATAGCCTGCGGACCCTAAGTCCGGATA
12167139 AACATCACTG
Statistics
Matches: 68, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
39 68 1.00
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.20
Consensus pattern (39 bp):
AGCACATAGCCTGCGGACCCTAAGTCCGGATATAATTCC
Found at i:12170468 original size:40 final size:40
Alignment explanation
Indices: 12170384--12170612 Score: 257
Period size: 40 Copynumber: 5.7 Consensus size: 40
12170374 TCGAATGATG
* * * *
12170384 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* * * *
12170424 TCCGGACTAAGAT-CCGAAGGCATTTGTACGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
12170464 TCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* * *
12170503 TCCGTGTTAAGTCCCGAAGGCATTTGTGTGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
12170543 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT-A-AA
*
12170585 GTCCCGGGCTATGTCCCGAAGGCATTTG
1 -T-CCGGGCTAAGTCCCGAAGGCATTTG
12170613 AACGAGTAGC
Statistics
Matches: 160, Mismatches: 21, Indels: 12
0.83 0.11 0.06
Matches are distributed among these distances:
39 32 0.20
40 94 0.59
41 8 0.05
42 2 0.01
43 1 0.01
44 23 0.14
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:12170520 original size:79 final size:84
Alignment explanation
Indices: 12170384--12170631 Score: 241
Period size: 79 Copynumber: 3.1 Consensus size: 84
12170374 TCGAATGATG
* * * * *
12170384 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAC-CAT-A-T-CCGGACTAAGAT-CCGAAG
1 TCCGGGCTAAGTCCCGAAGGCATTGGTGC-GAGTTACTAATAAGTCCCGGGCTAAG-TCCCGAAG
*
12170443 GCATTTGTACGAGATACTAAT
64 GCATTTGTACGAGATACTAAA
* *
12170464 TCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACT-A-AA-T-CCGTGTTAAGTCCCGAAGGC
1 TCCGGGCTAAGTCCCGAAGGCATTGGTGCGAGTTACTAATAAGTCCCGGGCTAAGTCCCGAAGGC
** *
12170524 ATTTGTGTGAGTTACTAAA
66 ATTTGTACGAGATACTAAA
* * *
12170543 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATAAGTCCCGGGCTATGTCCCGAAGGC
1 TCCGGGCTAAGTCCCGAAGGCATTGGTGCGAGTTACTAATAAGTCCCGGGCTAAGTCCCGAAGGC
* *
12170608 ATTTGAACGAG-TAGCTATA
66 ATTTGTACGAGATA-CTAAA
12170627 TCCGG
1 TCCGG
12170632 TTAAATTCCG
Statistics
Matches: 139, Mismatches: 19, Indels: 16
0.80 0.11 0.09
Matches are distributed among these distances:
78 1 0.01
79 57 0.41
80 41 0.29
81 1 0.01
82 2 0.01
83 3 0.02
84 34 0.24
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (84 bp):
TCCGGGCTAAGTCCCGAAGGCATTGGTGCGAGTTACTAATAAGTCCCGGGCTAAGTCCCGAAGGC
ATTTGTACGAGATACTAAA
Found at i:12178667 original size:40 final size:40
Alignment explanation
Indices: 12178429--12178653 Score: 287
Period size: 40 Copynumber: 5.7 Consensus size: 40
12178419 TCGAATGATG
* * * *
12178429 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* * *
12178469 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
12178509 TCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
12178548 TCCGGGTTAAGTCTCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
12178588 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
12178629 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
12178654 AACGAGTAGC
Statistics
Matches: 163, Mismatches: 17, Indels: 10
0.86 0.09 0.05
Matches are distributed among these distances:
39 34 0.21
40 119 0.73
41 10 0.06
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:12186439 original size:35 final size:35
Alignment explanation
Indices: 12186365--12186544 Score: 182
Period size: 35 Copynumber: 5.1 Consensus size: 35
12186355 TACTTACTTG
*
12186365 TATGGCCAAATACT-CAAGGTTCATTATATCATCACA
1 TATGGCCAAATA-TACAA-GTTCAATATATCATCACA
* *
12186401 TATGGCCAAATATACAAGTACAATATATCATCATA
1 TATGGCCAAATATACAAGTTCAATATATCATCACA
* * * * *
12186436 TATGACCGAATATACAAGCTCAATAAAACATCACA
1 TATGGCCAAATATACAAGTTCAATATATCATCACA
* * * * * * *
12186471 TGTAGTCAAATATTCAATTTTAATATAACATCACA
1 TATGGCCAAATATACAAGTTCAATATATCATCACA
* *
12186506 TGTGCCCAAATATACAAGTTCAATATATCATCACA
1 TATGGCCAAATATACAAGTTCAATATATCATCACA
12186541 TATG
1 TATG
12186545 TACATACCTA
Statistics
Matches: 115, Mismatches: 28, Indels: 3
0.79 0.19 0.02
Matches are distributed among these distances:
35 100 0.87
36 15 0.13
ACGTcount: A:0.42, C:0.19, G:0.09, T:0.29
Consensus pattern (35 bp):
TATGGCCAAATATACAAGTTCAATATATCATCACA
Found at i:12192549 original size:41 final size:41
Alignment explanation
Indices: 12192492--12192579 Score: 104
Period size: 41 Copynumber: 2.1 Consensus size: 41
12192482 TACAGTTTCT
* * **
12192492 GCTATAAAAAGCACTTAGCGTGCGAGACTGTAATAGCTTCA
1 GCTATGAAAAGCACTTAGCGTGCAAGACTACAATAGCTTCA
* * * *
12192533 GCTATGAAAGGCACTTAGTGTGCAAGATTACAATAGCTTCG
1 GCTATGAAAAGCACTTAGCGTGCAAGACTACAATAGCTTCA
12192574 GCTATG
1 GCTATG
12192580 CTTTGGCACT
Statistics
Matches: 39, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
41 39 1.00
ACGTcount: A:0.32, C:0.18, G:0.24, T:0.26
Consensus pattern (41 bp):
GCTATGAAAAGCACTTAGCGTGCAAGACTACAATAGCTTCA
Found at i:12198754 original size:34 final size:34
Alignment explanation
Indices: 12198715--12198780 Score: 132
Period size: 34 Copynumber: 1.9 Consensus size: 34
12198705 CCGCTAAAGG
12198715 TTTTTTAGATAAACGCCGCAAACTTTAGCGGTAT
1 TTTTTTAGATAAACGCCGCAAACTTTAGCGGTAT
12198749 TTTTTTAGATAAACGCCGCAAACTTTAGCGGT
1 TTTTTTAGATAAACGCCGCAAACTTTAGCGGT
12198781 GTTTCCTATA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 32 1.00
ACGTcount: A:0.29, C:0.18, G:0.18, T:0.35
Consensus pattern (34 bp):
TTTTTTAGATAAACGCCGCAAACTTTAGCGGTAT
Found at i:12199603 original size:42 final size:42
Alignment explanation
Indices: 12199487--12199634 Score: 154
Period size: 42 Copynumber: 3.5 Consensus size: 42
12199477 GATTTGAGCT
* * *
12199487 TTACGTGTAAGACCATGTCTGGGATATTGGCGTCATATCTGA
1 TTACGTGTAAGACCATGTCTGGGACATTGGCATCGTATCTGA
* *
12199529 TTACGTATAAGACCATGTCTGGGACATTGGCATCGTATTTGA
1 TTACGTGTAAGACCATGTCTGGGACATTGGCATCGTATCTGA
* * * ** *
12199571 TTTCGTGTAAGACCCTGTCGGGGACAGAGGCATCGGCA-CTGAA
1 TTACGTGTAAGACCATGTCTGGGACATTGGCATC-GTATCTG-A
* *
12199614 TTACATGTAAGACCACGTCTG
1 TTACGTGTAAGACCATGTCTG
12199635 AGACGTAGGC
Statistics
Matches: 86, Mismatches: 18, Indels: 3
0.80 0.17 0.03
Matches are distributed among these distances:
42 67 0.78
43 19 0.22
ACGTcount: A:0.25, C:0.20, G:0.26, T:0.29
Consensus pattern (42 bp):
TTACGTGTAAGACCATGTCTGGGACATTGGCATCGTATCTGA
Found at i:12199731 original size:15 final size:16
Alignment explanation
Indices: 12199704--12199733 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
12199694 AGAGTACGAC
12199704 ATATGAGAATGTATAT
1 ATATGAGAATGTATAT
12199720 ATATGA-AATGTATA
1 ATATGAGAATGTATA
12199734 ATCTTTACAG
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 8 0.57
16 6 0.43
ACGTcount: A:0.47, C:0.00, G:0.17, T:0.37
Consensus pattern (16 bp):
ATATGAGAATGTATAT
Found at i:12216343 original size:27 final size:27
Alignment explanation
Indices: 12216264--12216350 Score: 104
Period size: 27 Copynumber: 3.2 Consensus size: 27
12216254 AGGAAGCGTC
* *
12216264 CTGGTGGCTATGCCATAATTATCTGAT
1 CTGGTGGCTATGCCACAATTATCTGTT
* *
12216291 CTAGTGGCTCTGCCAC-ATATATCTGTT
1 CTGGTGGCTATGCCACAAT-TATCTGTT
* *
12216318 CTGGTAGCTTTGCCACAATTATCTGTT
1 CTGGTGGCTATGCCACAATTATCTGTT
12216345 CTGGTG
1 CTGGTG
12216351 AATCGGTCAC
Statistics
Matches: 50, Mismatches: 8, Indels: 4
0.81 0.13 0.06
Matches are distributed among these distances:
26 2 0.04
27 46 0.92
28 2 0.04
ACGTcount: A:0.18, C:0.22, G:0.22, T:0.38
Consensus pattern (27 bp):
CTGGTGGCTATGCCACAATTATCTGTT
Found at i:12224188 original size:27 final size:26
Alignment explanation
Indices: 12224144--12224257 Score: 129
Period size: 27 Copynumber: 4.3 Consensus size: 26
12224134 TGGAGGAAGC
*
12224144 GTTCTGGTGGCTTTGCCATAATTATCT
1 GTTCTGGTGGCTCTGCCA-AATTATCT
* * *
12224171 GATCTAGTGGCTCTGCCACATATATCT
1 GTTCTGGTGGCTCTGCCAAAT-TATCT
*
12224198 GTTCTGGTAGCTCTGCCACAATTATCT
1 GTTCTGGTGGCTCTGCCA-AATTATCT
* * *
12224225 GTTCTGGTGACTCTGTCACATTATCT
1 GTTCTGGTGGCTCTGCCAAATTATCT
12224251 GTTCTGG
1 GTTCTGG
12224258 CAGCCATGCT
Statistics
Matches: 73, Mismatches: 12, Indels: 5
0.81 0.13 0.06
Matches are distributed among these distances:
26 16 0.22
27 55 0.75
28 2 0.03
ACGTcount: A:0.17, C:0.23, G:0.21, T:0.39
Consensus pattern (26 bp):
GTTCTGGTGGCTCTGCCAAATTATCT
Found at i:12224239 original size:54 final size:53
Alignment explanation
Indices: 12224144--12224257 Score: 156
Period size: 54 Copynumber: 2.1 Consensus size: 53
12224134 TGGAGGAAGC
* * * *
12224144 GTTCTGGTGGCTTTGCCATAATTATCTGATCTAGTGGCTCTGCCACATATATCT
1 GTTCTGGTAGCTCTGCCACAATTATCTGATCTAGTGACTCTGCCACAT-TATCT
* * *
12224198 GTTCTGGTAGCTCTGCCACAATTATCTGTTCTGGTGACTCTGTCACATTATCT
1 GTTCTGGTAGCTCTGCCACAATTATCTGATCTAGTGACTCTGCCACATTATCT
12224251 GTTCTGG
1 GTTCTGG
12224258 CAGCCATGCT
Statistics
Matches: 53, Mismatches: 7, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
53 12 0.23
54 41 0.77
ACGTcount: A:0.17, C:0.23, G:0.21, T:0.39
Consensus pattern (53 bp):
GTTCTGGTAGCTCTGCCACAATTATCTGATCTAGTGACTCTGCCACATTATCT
Found at i:12225536 original size:27 final size:26
Alignment explanation
Indices: 12225495--12225599 Score: 113
Period size: 27 Copynumber: 3.9 Consensus size: 26
12225485 AGGAAGCGTC
*
12225495 CTGGTGGCTATGCCACAATTATCTGAT
1 CTGGTGGCTCTGCCAC-ATTATCTGAT
* *
12225522 CTAGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTCTGCCACAT-TATCTGAT
*
12225549 CTGGTGGCTTTGCCACAATTATCT-ATT
1 CTGGTGGCTCTGCCAC-ATTATCTGA-T
* *
12225576 CTGGTGACTCTGTCACATTATCTG
1 CTGGTGGCTCTGCCACATTATCTG
12225600 TTTTGGCAGC
Statistics
Matches: 65, Mismatches: 9, Indels: 8
0.79 0.11 0.10
Matches are distributed among these distances:
26 9 0.14
27 54 0.83
28 2 0.03
ACGTcount: A:0.19, C:0.24, G:0.20, T:0.37
Consensus pattern (26 bp):
CTGGTGGCTCTGCCACATTATCTGAT
Found at i:12225587 original size:54 final size:53
Alignment explanation
Indices: 12225495--12225601 Score: 153
Period size: 54 Copynumber: 2.0 Consensus size: 53
12225485 AGGAAGCGTC
*
12225495 CTGGTGGCTATGCCACAATTATCTGATCTAGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTATGCCACAATTATCTGATCTAGTGACTCTGCCACAT-TATCTGTT
* * *
12225549 CTGGTGGCTTTGCCACAATTATCT-ATTCTGGTGACTCTGTCACATTATCTGTT
1 CTGGTGGCTATGCCACAATTATCTGA-TCTAGTGACTCTGCCACATTATCTGTT
12225602 TTGGCAGCCA
Statistics
Matches: 48, Mismatches: 4, Indels: 3
0.87 0.07 0.05
Matches are distributed among these distances:
53 9 0.19
54 39 0.81
ACGTcount: A:0.19, C:0.23, G:0.20, T:0.38
Consensus pattern (53 bp):
CTGGTGGCTATGCCACAATTATCTGATCTAGTGACTCTGCCACATTATCTGTT
Found at i:12232934 original size:31 final size:31
Alignment explanation
Indices: 12232899--12232961 Score: 108
Period size: 31 Copynumber: 2.0 Consensus size: 31
12232889 TGCTTATCTT
*
12232899 AGTTTCTTACCTTGGTTCTGGTTTAGGTGTG
1 AGTTTCTTACCTTGGTTCTGGTTCAGGTGTG
*
12232930 AGTTTCTTGCCTTGGTTCTGGTTCAGGTGTG
1 AGTTTCTTACCTTGGTTCTGGTTCAGGTGTG
12232961 A
1 A
12232962 CTAACCCTTT
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.10, C:0.14, G:0.30, T:0.46
Consensus pattern (31 bp):
AGTTTCTTACCTTGGTTCTGGTTCAGGTGTG
Found at i:12236347 original size:31 final size:31
Alignment explanation
Indices: 12236303--12236386 Score: 143
Period size: 31 Copynumber: 2.7 Consensus size: 31
12236293 TTAGCCTTGA
*
12236303 CATAT-ACTAGGCCGAAGCCTTTCCATAAAT
1 CATATCACTGGGCCGAAGCCTTTCCATAAAT
*
12236333 CATATCACTGGGCCGAAGCCTTTTCATAAAT
1 CATATCACTGGGCCGAAGCCTTTCCATAAAT
12236364 CATATCACTGGGCCGAAGCCTTT
1 CATATCACTGGGCCGAAGCCTTT
12236387 ACTGTAAACG
Statistics
Matches: 51, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
30 5 0.10
31 46 0.90
ACGTcount: A:0.29, C:0.27, G:0.17, T:0.27
Consensus pattern (31 bp):
CATATCACTGGGCCGAAGCCTTTCCATAAAT
Found at i:12236457 original size:42 final size:42
Alignment explanation
Indices: 12236410--12236501 Score: 157
Period size: 42 Copynumber: 2.2 Consensus size: 42
12236400 TGGCTCTTAG
* *
12236410 GCCCATTTCAATATCACATGTAATTTCAATGGATGTATGCAA
1 GCCCATTTCAATATCACATGTAATGTCAATGAATGTATGCAA
*
12236452 GCCCATCTCAATATCACATGTAATGTCAATGAATGTATGCAA
1 GCCCATTTCAATATCACATGTAATGTCAATGAATGTATGCAA
12236494 GCCCATTT
1 GCCCATTT
12236502 GGGGAGACTA
Statistics
Matches: 46, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
42 46 1.00
ACGTcount: A:0.33, C:0.22, G:0.14, T:0.32
Consensus pattern (42 bp):
GCCCATTTCAATATCACATGTAATGTCAATGAATGTATGCAA
Found at i:12236718 original size:25 final size:25
Alignment explanation
Indices: 12236649--12236718 Score: 104
Period size: 25 Copynumber: 2.8 Consensus size: 25
12236639 CTCTTTTAAT
*
12236649 AACTGGGGCAAAGCCCTTTCTGATA
1 AACTGGGGCAAAGCCCTTTTTGATA
*
12236674 AACTGGGGCAAAGCCCTTTTTGGTA
1 AACTGGGGCAAAGCCCTTTTTGATA
* *
12236699 AACTAGGGCAGAGCCCTTTT
1 AACTGGGGCAAAGCCCTTTT
12236719 AGCACTTCCT
Statistics
Matches: 41, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 41 1.00
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.26
Consensus pattern (25 bp):
AACTGGGGCAAAGCCCTTTTTGATA
Found at i:12237676 original size:27 final size:27
Alignment explanation
Indices: 12237626--12237832 Score: 159
Period size: 27 Copynumber: 7.6 Consensus size: 27
12237616 TCTCCTACAG
* * * *
12237626 GGGTGTTTTGGTAAATCTACAAACCAA
1 GGGTATTTTGGTAATTTTATAAACCAA
* *
12237653 GGGTATTTTAGTAATTTTGTAAACCAA
1 GGGTATTTTGGTAATTTTATAAACCAA
* * * *
12237680 TGGTATTTCT-ATAATTTTTAGAAAGTCAA
1 GGGTATTT-TGGTAA-TTTTATAAA-CCAA
* * * * *
12237709 GGGTATTTCT-ATAATTGTGTAAATCAG
1 GGGTATTT-TGGTAATTTTATAAACCAA
* **
12237736 GGGTATTTTGGTAATTTTACAAATTAA
1 GGGTATTTTGGTAATTTTATAAACCAA
*
12237763 GGGTATTTTGGTAATTTCATAAACC-A
1 GGGTATTTTGGTAATTTTATAAACCAA
* *
12237789 GTGGTATTTTGGTAATTTTACAAACTAA
1 G-GGTATTTTGGTAATTTTATAAACCAA
12237817 GGGTATTTTGGTAATT
1 GGGTATTTTGGTAATT
12237833 CTACCCTATA
Statistics
Matches: 145, Mismatches: 29, Indels: 12
0.78 0.16 0.06
Matches are distributed among these distances:
26 3 0.02
27 110 0.76
28 16 0.11
29 16 0.11
ACGTcount: A:0.31, C:0.08, G:0.20, T:0.41
Consensus pattern (27 bp):
GGGTATTTTGGTAATTTTATAAACCAA
Found at i:12237795 original size:54 final size:53
Alignment explanation
Indices: 12237631--12237832 Score: 201
Period size: 54 Copynumber: 3.7 Consensus size: 53
12237621 TACAGGGGTG
* * * *
12237631 TTTTGGTAAATCTACAAACCAAGGGTATTTTAGTAATTTTGTAAACCAATGGTA
1 TTTTGGTAATTTTACAAACCAAGGGTATTTTGGTAA-TTTGTAAACCAGTGGTA
* * * * * *
12237685 TTTCT-ATAATTTTTAGAAAGTCAAGGGTATTTCT-ATAATTGTGTAAATCAGGGGTA
1 TTT-TGGTAA-TTTTACAAA-CCAAGGGTATTT-TGGTAATT-TGTAAACCAGTGGTA
** *
12237741 TTTTGGTAATTTTACAAATTAAGGGTATTTTGGTAATTTCATAAACCAGTGGTA
1 TTTTGGTAATTTTACAAACCAAGGGTATTTTGGTAATTT-GTAAACCAGTGGTA
*
12237795 TTTTGGTAATTTTACAAACTAAGGGTATTTTGGTAATT
1 TTTTGGTAATTTTACAAACCAAGGGTATTTTGGTAATT
12237833 CTACCCTATA
Statistics
Matches: 123, Mismatches: 17, Indels: 16
0.79 0.11 0.10
Matches are distributed among these distances:
53 2 0.02
54 70 0.57
55 18 0.15
56 32 0.26
57 1 0.01
ACGTcount: A:0.32, C:0.08, G:0.18, T:0.42
Consensus pattern (53 bp):
TTTTGGTAATTTTACAAACCAAGGGTATTTTGGTAATTTGTAAACCAGTGGTA
Found at i:12237883 original size:26 final size:26
Alignment explanation
Indices: 12237853--12237955 Score: 91
Period size: 27 Copynumber: 3.8 Consensus size: 26
12237843 GGGGTATTTC
12237853 AGTAATTT-CACAATCGAGGGTAAAAT
1 AGTAATTTGCA-AATCGAGGGTAAAAT
* *
12237879 GGTAATTTTGTAAATCGAGGGTAAAAT
1 AGTAA-TTTGCAAATCGAGGGTAAAAT
* * *
12237906 AGTAATTTTGTAAATCAAGGGTAAAAC
1 AGTAA-TTTGCAAATCGAGGGTAAAAT
* **
12237933 AGTGATTCTATAAATCGAGGGTA
1 AGTAATT-TGCAAATCGAGGGTA
12237956 CTTTGGTAAT
Statistics
Matches: 66, Mismatches: 8, Indels: 5
0.84 0.10 0.06
Matches are distributed among these distances:
26 6 0.09
27 59 0.89
28 1 0.02
ACGTcount: A:0.40, C:0.08, G:0.22, T:0.30
Consensus pattern (26 bp):
AGTAATTTGCAAATCGAGGGTAAAAT
Found at i:12237894 original size:27 final size:27
Alignment explanation
Indices: 12237864--12237955 Score: 130
Period size: 27 Copynumber: 3.4 Consensus size: 27
12237854 GTAATTTCAC
*
12237864 AATCGAGGGTAAAATGGTAATTTTGTA
1 AATCGAGGGTAAAATAGTAATTTTGTA
12237891 AATCGAGGGTAAAATAGTAATTTTGTA
1 AATCGAGGGTAAAATAGTAATTTTGTA
* * * * *
12237918 AATCAAGGGTAAAACAGTGATTCTATA
1 AATCGAGGGTAAAATAGTAATTTTGTA
12237945 AATCGAGGGTA
1 AATCGAGGGTA
12237956 CTTTGGTAAT
Statistics
Matches: 58, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 58 1.00
ACGTcount: A:0.40, C:0.07, G:0.24, T:0.29
Consensus pattern (27 bp):
AATCGAGGGTAAAATAGTAATTTTGTA
Found at i:12249458 original size:45 final size:44
Alignment explanation
Indices: 12249362--12249472 Score: 150
Period size: 45 Copynumber: 2.5 Consensus size: 44
12249352 ACAGTACTAT
12249362 TCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAAATACCAC
1 TCGGG-CTTTGAGCCTAGCAGGCTATAATGCCGGTGAAATACCAC
* ** *
12249407 TCGGGCTATTGAGCCTAGCAGGCTATAATGCCGGTGAGATATTAT
1 TCGGGCT-TTGAGCCTAGCAGGCTATAATGCCGGTGAAATACCAC
* *
12249452 TTGGGCTTCGAGCCTAGCAGG
1 TCGGGCTTTGAGCCTAGCAGG
12249473 TGAAATGCTG
Statistics
Matches: 59, Mismatches: 6, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
44 15 0.25
45 44 0.75
ACGTcount: A:0.23, C:0.23, G:0.30, T:0.25
Consensus pattern (44 bp):
TCGGGCTTTGAGCCTAGCAGGCTATAATGCCGGTGAAATACCAC
Found at i:12256077 original size:24 final size:24
Alignment explanation
Indices: 12256032--12256077 Score: 65
Period size: 24 Copynumber: 1.9 Consensus size: 24
12256022 TATTTAAAAA
* *
12256032 AAATATATAATATTTATAAATATT
1 AAATATAAAATATTAATAAATATT
*
12256056 AAATATAAAATATTAATCAATA
1 AAATATAAAATATTAATAAATA
12256078 ATATAAAATA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 19 1.00
ACGTcount: A:0.59, C:0.02, G:0.00, T:0.39
Consensus pattern (24 bp):
AAATATAAAATATTAATAAATATT
Found at i:12260806 original size:25 final size:25
Alignment explanation
Indices: 12260778--12260825 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
12260768 TTATATTATG
* * *
12260778 AAAATGACTGTTTTGCCCCTAGGTA
1 AAAATGACCGTTATACCCCTAGGTA
12260803 AAAATGACCGTTATACCCCTAGG
1 AAAATGACCGTTATACCCCTAGG
12260826 GTTTACTTAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.31, C:0.23, G:0.19, T:0.27
Consensus pattern (25 bp):
AAAATGACCGTTATACCCCTAGGTA
Found at i:12260911 original size:18 final size:19
Alignment explanation
Indices: 12260871--12260911 Score: 57
Period size: 20 Copynumber: 2.2 Consensus size: 19
12260861 GCATGATTGA
*
12260871 TATGATATGCACATAATATG
1 TATGATATGCACAT-AGATG
12260891 TATGATATGCACAT-GATG
1 TATGATATGCACATAGATG
12260909 TAT
1 TAT
12260912 TCATAAATGC
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
18 6 0.30
20 14 0.70
ACGTcount: A:0.37, C:0.10, G:0.17, T:0.37
Consensus pattern (19 bp):
TATGATATGCACATAGATG
Found at i:12261075 original size:25 final size:26
Alignment explanation
Indices: 12260958--12261081 Score: 196
Period size: 26 Copynumber: 4.8 Consensus size: 26
12260948 GAGGAAGTGC
**
12260958 AAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTACCG
12260984 AAAAGGGCTTATGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTACCG
*
12261010 AAAAGGGCTTATGCCCCAGTTTATCG
1 AAAAGGGCTTATGCCCCAGTTTACCG
*
12261036 AAAAAGGCTTATGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTACCG
*
12261062 -AAAGGGCTTTTGCCCCAGTT
1 AAAAGGGCTTATGCCCCAGTT
12261082 ATTGAAAGAG
Statistics
Matches: 91, Mismatches: 7, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
25 18 0.20
26 73 0.80
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.27
Consensus pattern (26 bp):
AAAAGGGCTTATGCCCCAGTTTACCG
Found at i:12262969 original size:7 final size:7
Alignment explanation
Indices: 12262957--12263099 Score: 60
Period size: 7 Copynumber: 20.1 Consensus size: 7
12262947 ACTAATTAAT
12262957 CTAAACC
1 CTAAACC
12262964 CTAAACC
1 CTAAACC
*
12262971 TCTTAACCC
1 -C-TAAACC
*
12262980 CT-ATCC
1 CTAAACC
*
12262986 CATAAACA
1 C-TAAACC
* *
12262994 ATAAACA
1 CTAAACC
*
12263001 CTAAACA
1 CTAAACC
12263008 CTAAACC
1 CTAAACC
12263015 CTAAACC
1 CTAAACC
*
12263022 CTTAACCC
1 C-TAAACC
12263030 CT-AACC
1 CTAAACC
*
12263036 CCAAACC
1 CTAAACC
*
12263043 CTTACACC
1 C-TAAACC
*
12263051 TTAAACTC
1 CTAAAC-C
12263059 C--AACC
1 CTAAACC
**
12263064 CTAAATA
1 CTAAACC
*
12263071 CTAAACA
1 CTAAACC
12263078 CTAAACC
1 CTAAACC
* * *
12263085 ATAATCT
1 CTAAACC
12263092 CTAAACC
1 CTAAACC
12263099 C
1 C
12263100 ATAATTCATC
Statistics
Matches: 101, Mismatches: 25, Indels: 20
0.69 0.17 0.14
Matches are distributed among these distances:
5 2 0.02
6 11 0.11
7 68 0.67
8 15 0.15
9 5 0.05
ACGTcount: A:0.42, C:0.38, G:0.00, T:0.20
Consensus pattern (7 bp):
CTAAACC
Found at i:12263153 original size:25 final size:25
Alignment explanation
Indices: 12263093--12263153 Score: 61
Period size: 25 Copynumber: 2.4 Consensus size: 25
12263083 CCATAATCTC
*
12263093 TAAACCCATAATTCATCTTAAACCTT
1 TAAACCC-TAATTAATCTTAAACCTT
* **
12263119 CAAATACTAATTAACTCTTAAA-CTT
1 TAAACCCTAATTAA-TCTTAAACCTT
12263144 TAAACCCTAA
1 TAAACCCTAA
12263154 AACCATATAT
Statistics
Matches: 27, Mismatches: 7, Indels: 3
0.73 0.19 0.08
Matches are distributed among these distances:
25 16 0.59
26 11 0.41
ACGTcount: A:0.43, C:0.25, G:0.00, T:0.33
Consensus pattern (25 bp):
TAAACCCTAATTAATCTTAAACCTT
Found at i:12263423 original size:41 final size:41
Alignment explanation
Indices: 12263366--12263463 Score: 151
Period size: 41 Copynumber: 2.4 Consensus size: 41
12263356 TTTTAACGGT
* *
12263366 GTTTTAGCAAAAGCGCCGCTAATGCTCTGGTATTTAGCAGC
1 GTTTTACCGAAAGCGCCGCTAATGCTCTGGTATTTAGCAGC
* * *
12263407 GTTTTACCGAAAGCGCCGCTAATGCTCTGGTTTTTAGCGGT
1 GTTTTACCGAAAGCGCCGCTAATGCTCTGGTATTTAGCAGC
12263448 GTTTTACCGAAAGCGC
1 GTTTTACCGAAAGCGC
12263464 GTTTTTAGCG
Statistics
Matches: 52, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
41 52 1.00
ACGTcount: A:0.21, C:0.22, G:0.26, T:0.31
Consensus pattern (41 bp):
GTTTTACCGAAAGCGCCGCTAATGCTCTGGTATTTAGCAGC
Found at i:12263509 original size:40 final size:41
Alignment explanation
Indices: 12263465--12263552 Score: 133
Period size: 41 Copynumber: 2.2 Consensus size: 41
12263455 CGAAAGCGCG
**
12263465 TTTTTAGCGGCGTTTTA-CTGAAAACGCCGCTATTGCTCTA
1 TTTTTAGCGGCGTTTTAGCAAAAAACGCCGCTATTGCTCTA
* *
12263505 TTTTTAGCGGTGTTTTAGCAAAAAACGCCGCTATTGCTCTG
1 TTTTTAGCGGCGTTTTAGCAAAAAACGCCGCTATTGCTCTA
12263546 TTTTTAG
1 TTTTTAG
12263553 AAAAACGCCA
Statistics
Matches: 43, Mismatches: 4, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
40 16 0.37
41 27 0.63
ACGTcount: A:0.20, C:0.19, G:0.20, T:0.40
Consensus pattern (41 bp):
TTTTTAGCGGCGTTTTAGCAAAAAACGCCGCTATTGCTCTA
Found at i:12263549 original size:69 final size:68
Alignment explanation
Indices: 12263399--12263578 Score: 170
Period size: 69 Copynumber: 2.6 Consensus size: 68
12263389 GCTCTGGTAT
* * * * ** *
12263399 TTAGCAGCGTTTTACCGAAAGCGCCGCTAATGCTCTGGTTTTTAGCGGTGTTTTACCGAAAGCGC
1 TTAGCGGCGTTTTACTGAAAACGCCGCTATTGCTCT-GTTTTTAGCGGTGTTTTACAAAAAACGC
* *
12263464 GTTT
65 GCTA
*
12263468 TTAGCGGCGTTTTACTGAAAACGCCGCTATTGCTCTATTTTTAGCGGTGTTTTAGCAAAAAACGC
1 TTAGCGGCGTTTTACTGAAAACGCCGCTATTGCTCTGTTTTTAGCGGTGTTTTA-CAAAAAACG-
12263533 CGCTA
64 CGCTA
* *
12263538 TT-GC-TCTGTTTT--TAGAAAAACGCCACTATTGCTCTGTTTTT
1 TTAGCGGC-GTTTTACT-G-AAAACGCCGCTATTGCTCTGTTTTT
12263579 TACAATTTTT
Statistics
Matches: 93, Mismatches: 13, Indels: 10
0.80 0.11 0.09
Matches are distributed among these distances:
67 1 0.01
68 19 0.20
69 68 0.73
70 5 0.05
ACGTcount: A:0.21, C:0.21, G:0.22, T:0.36
Consensus pattern (68 bp):
TTAGCGGCGTTTTACTGAAAACGCCGCTATTGCTCTGTTTTTAGCGGTGTTTTACAAAAAACGCG
CTA
Found at i:12263566 original size:28 final size:28
Alignment explanation
Indices: 12263525--12263578 Score: 99
Period size: 28 Copynumber: 1.9 Consensus size: 28
12263515 TGTTTTAGCA
*
12263525 AAAAACGCCGCTATTGCTCTGTTTTTAG
1 AAAAACGCCACTATTGCTCTGTTTTTAG
12263553 AAAAACGCCACTATTGCTCTGTTTTT
1 AAAAACGCCACTATTGCTCTGTTTTT
12263579 TACAATTTTT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
28 25 1.00
ACGTcount: A:0.26, C:0.22, G:0.15, T:0.37
Consensus pattern (28 bp):
AAAAACGCCACTATTGCTCTGTTTTTAG
Found at i:12264449 original size:55 final size:54
Alignment explanation
Indices: 12264335--12264523 Score: 231
Period size: 55 Copynumber: 3.5 Consensus size: 54
12264325 AACTTACCAT
* * *
12264335 TGCCATGTCTTGACATGGTCTTACGTGGTATCCTTT-CCTTAT-GAACTCACCAA
1 TGCCATGCCTTGACATGGTCTTACATGGTA-CCTTTGCCTTATAGAACTCATCAA
** *
12264388 TGCCATGCCTTGGGATGGTCTTACATGGGACCTTTGCCTTATAGTAACTCATCAA
1 TGCCATGCCTTGACATGGTCTTACATGGTACCTTTGCCTTATAG-AACTCATCAA
* * * *
12264443 TGCCATGTCTTGACATGGTCTTACATGATTTCC-TTGCCTTATAGAACTTATCAA
1 TGCCATGCCTTGACATGGTCTTACATG-GTACCTTTGCCTTATAGAACTCATCAA
*
12264497 TGCCATGCCTTGGCATGGTCTTACATG
1 TGCCATGCCTTGACATGGTCTTACATG
12264524 ATATCCTTAT
Statistics
Matches: 117, Mismatches: 15, Indels: 7
0.84 0.11 0.05
Matches are distributed among these distances:
52 5 0.04
53 31 0.26
54 35 0.30
55 44 0.38
56 2 0.02
ACGTcount: A:0.21, C:0.24, G:0.19, T:0.35
Consensus pattern (54 bp):
TGCCATGCCTTGACATGGTCTTACATGGTACCTTTGCCTTATAGAACTCATCAA
Found at i:12264565 original size:47 final size:47
Alignment explanation
Indices: 12264510--12264631 Score: 217
Period size: 47 Copynumber: 2.6 Consensus size: 47
12264500 CATGCCTTGG
* *
12264510 CATGGTCTTACATGATATCCTTATCTTACCAAATGCCATGTTCCAAA
1 CATGGTCTTACATGGTATCCTTGTCTTACCAAATGCCATGTTCCAAA
*
12264557 CATGGTCTTACATGGTATCCTTGTCTTACCAAATTCCATGTTCCAAA
1 CATGGTCTTACATGGTATCCTTGTCTTACCAAATGCCATGTTCCAAA
12264604 CATGGTCTTACATGGTATCCTTGTCTTA
1 CATGGTCTTACATGGTATCCTTGTCTTA
12264632 GTGCCAATGC
Statistics
Matches: 72, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
47 72 1.00
ACGTcount: A:0.25, C:0.25, G:0.13, T:0.37
Consensus pattern (47 bp):
CATGGTCTTACATGGTATCCTTGTCTTACCAAATGCCATGTTCCAAA
Found at i:12265618 original size:12 final size:12
Alignment explanation
Indices: 12265597--12265633 Score: 51
Period size: 12 Copynumber: 3.2 Consensus size: 12
12265587 TTTTCACTTA
12265597 AAATCGCTTAGC
1 AAATCGCTTAGC
*
12265609 AAATCACTTA--
1 AAATCGCTTAGC
12265619 AAATCGCTTAGC
1 AAATCGCTTAGC
12265631 AAA
1 AAA
12265634 AGTTGTTTAA
Statistics
Matches: 21, Mismatches: 2, Indels: 4
0.78 0.07 0.15
Matches are distributed among these distances:
10 9 0.43
12 12 0.57
ACGTcount: A:0.43, C:0.22, G:0.11, T:0.24
Consensus pattern (12 bp):
AAATCGCTTAGC
Found at i:12265618 original size:22 final size:22
Alignment explanation
Indices: 12265590--12265633 Score: 88
Period size: 22 Copynumber: 2.0 Consensus size: 22
12265580 TTACTTGTTT
12265590 TCACTTAAAATCGCTTAGCAAA
1 TCACTTAAAATCGCTTAGCAAA
12265612 TCACTTAAAATCGCTTAGCAAA
1 TCACTTAAAATCGCTTAGCAAA
12265634 AGTTGTTTAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.41, C:0.23, G:0.09, T:0.27
Consensus pattern (22 bp):
TCACTTAAAATCGCTTAGCAAA
Found at i:12271178 original size:55 final size:53
Alignment explanation
Indices: 12271041--12271255 Score: 180
Period size: 54 Copynumber: 4.0 Consensus size: 53
12271031 TTTTCCTTTT
* * * * *
12271041 TGAACTTACCATTTCCATGTCTTGACATGGTCTTACGTGGTATCCTTGCCTTA
1 TGAACTCACCAATTCCATGTCTTGACATGGTCTTACATGGGATCCTTACCTTA
* * * *
12271094 TGAACTCACCAATGCCATGCCTTGGCATGGCCTTACATGGGA-CCTTTACCTTA
1 TGAACTCACCAATTCCATGTCTTGACATGGTCTTACATGGGATCC-TTACCTTA
* *** * *
12271147 TAGTAACTCATCAATTCCATGTCTTGACATGGTCTTACATGATTTTCTTGCCTTA
1 T-G-AACTCACCAATTCCATGTCTTGACATGGTCTTACATGGGATCCTTACCTTA
* * * * * ** *
12271202 TAGAACTTATCAATGCCATGCCTTGGCATGGTCTTACATGATATCCTTATCTTA
1 T-GAACTCACCAATTCCATGTCTTGACATGGTCTTACATGGGATCCTTACCTTA
12271256 CCAAATGCCA
Statistics
Matches: 131, Mismatches: 27, Indels: 7
0.79 0.16 0.04
Matches are distributed among these distances:
52 2 0.02
53 42 0.32
54 44 0.34
55 42 0.32
56 1 0.01
ACGTcount: A:0.23, C:0.25, G:0.16, T:0.37
Consensus pattern (53 bp):
TGAACTCACCAATTCCATGTCTTGACATGGTCTTACATGGGATCCTTACCTTA
Found at i:12271283 original size:47 final size:47
Alignment explanation
Indices: 12271228--12271349 Score: 208
Period size: 47 Copynumber: 2.6 Consensus size: 47
12271218 CATGCCTTGG
*
12271228 CATGGTCTTACATGATATCCTTATCTTACCAAATGCCATGTTCCAAA
1 CATGGTCTTACATGGTATCCTTATCTTACCAAATGCCATGTTCCAAA
* * *
12271275 CATGGTCTTACATGGTATCCTTGTCTTACGAAATTCCATGTTCCAAA
1 CATGGTCTTACATGGTATCCTTATCTTACCAAATGCCATGTTCCAAA
12271322 CATGGTCTTACATGGTATCCTTATCTTA
1 CATGGTCTTACATGGTATCCTTATCTTA
12271350 GTGCCAATGT
Statistics
Matches: 70, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
47 70 1.00
ACGTcount: A:0.26, C:0.24, G:0.13, T:0.37
Consensus pattern (47 bp):
CATGGTCTTACATGGTATCCTTATCTTACCAAATGCCATGTTCCAAA
Found at i:12271438 original size:47 final size:46
Alignment explanation
Indices: 12271364--12271485 Score: 131
Period size: 45 Copynumber: 2.6 Consensus size: 46
12271354 CAATGTTACA
* * * * *
12271364 TCTTGATATGGTCTTACATGGAGTCCTTAATCAATGTCGATGCCATG
1 TCTTGACATGGTCTTACAGGGA-TCCTTAAGCAATATCAATGCCATG
**
12271411 TCTTGACATGGTCTTACACGGGATCCTT--GCCTTATCAATGCCATG
1 TCTTGACATGGTCTTACA-GGGATCCTTAAGCAATATCAATGCCATG
*
12271456 TCTTGACATGGTCTTACATGGTATCCTTAA
1 TCTTGACATGGTCTTACA-GGGATCCTTAA
12271486 CCGTCAATTC
Statistics
Matches: 63, Mismatches: 9, Indels: 6
0.81 0.12 0.08
Matches are distributed among these distances:
45 38 0.60
47 22 0.35
48 3 0.05
ACGTcount: A:0.22, C:0.22, G:0.20, T:0.36
Consensus pattern (46 bp):
TCTTGACATGGTCTTACAGGGATCCTTAAGCAATATCAATGCCATG
Found at i:12272147 original size:31 final size:30
Alignment explanation
Indices: 12272112--12272169 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
12272102 TTAACTCAAA
*
12272112 CTTTGGAAAAATTACAATTTTTCCCCTAAAC
1 CTTT-GAAAAATTACAATTTTACCCCTAAAC
* *
12272143 CTTTGTAGAATTACAATTTTACCCCTA
1 CTTTGAAAAATTACAATTTTACCCCTA
12272170 GGCTCAGATA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
30 20 0.83
31 4 0.17
ACGTcount: A:0.33, C:0.22, G:0.07, T:0.38
Consensus pattern (30 bp):
CTTTGAAAAATTACAATTTTACCCCTAAAC
Found at i:12275533 original size:32 final size:32
Alignment explanation
Indices: 12275492--12275556 Score: 103
Period size: 32 Copynumber: 2.0 Consensus size: 32
12275482 TCGGATAGGC
*
12275492 AAAAGTCATATGCCAATTTGAAAAGGAAAGAG
1 AAAAGTCATATGCCAATTTAAAAAGGAAAGAG
**
12275524 AAAAGTCATATGCTGATTTAAAAAGGAAAGAG
1 AAAAGTCATATGCCAATTTAAAAAGGAAAGAG
12275556 A
1 A
12275557 TTGAGTTTCA
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
32 30 1.00
ACGTcount: A:0.51, C:0.08, G:0.22, T:0.20
Consensus pattern (32 bp):
AAAAGTCATATGCCAATTTAAAAAGGAAAGAG
Found at i:12278195 original size:173 final size:172
Alignment explanation
Indices: 12277896--12278217 Score: 473
Period size: 173 Copynumber: 1.9 Consensus size: 172
12277886 CGCAACAGGT
12277896 TTTAAAAATTTATAATTAATTGTTCCTAAAACTAACAATTATCACGATGAAGGCAAGTGTACCTA
1 TTTAAAAATTTATAATTAATTGTTCCTAAAACTAACAATTATCACGATGAAGGCAAGTGTACCTA
* * * *
12277961 TCGAATAGTAGTATAGCTTTGGCAAGACCAGATTGTCGAACCCAAAGGAACCAAGAGTACTAGTA
66 TCGAACAGTAGTATAGCTTTAGCAAGACCAGATTGTCGAACCCAAAGGAAACAAAAGTACTAGTA
* *
12278026 ATTACTTTCTTTTTATTATTGATCGCGTGATTTCGTGATAGG
131 ATGACTGTCTTTTTATTATTGATCGCGTGATTTCGTGATAGG
* * * * * * *
12278068 TTTAAAATATTTATAATTAATTGTTCTTGAAACTAACTATTATCCCGATGTAGGCAATTGTATCT
1 TTTAAAA-ATTTATAATTAATTGTTCCTAAAACTAACAATTATCACGATGAAGGCAAGTGTACCT
* ** * *
12278133 ATCGAACAGTAGTATAGTTTTAGCAAGACTGGATTGTCGAACCCAAGGGAAATAAAAGTACTAGT
65 ATCGAACAGTAGTATAGCTTTAGCAAGACCAGATTGTCGAACCCAAAGGAAACAAAAGTACTAGT
12278198 AATGACTGTCTTTTTATTAT
130 AATGACTGTCTTTTTATTAT
12278218 CTAGCCTAAG
Statistics
Matches: 131, Mismatches: 18, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
172 7 0.05
173 124 0.95
ACGTcount: A:0.34, C:0.14, G:0.17, T:0.35
Consensus pattern (172 bp):
TTTAAAAATTTATAATTAATTGTTCCTAAAACTAACAATTATCACGATGAAGGCAAGTGTACCTA
TCGAACAGTAGTATAGCTTTAGCAAGACCAGATTGTCGAACCCAAAGGAAACAAAAGTACTAGTA
ATGACTGTCTTTTTATTATTGATCGCGTGATTTCGTGATAGG
Found at i:12283588 original size:60 final size:59
Alignment explanation
Indices: 12283521--12283659 Score: 165
Period size: 60 Copynumber: 2.3 Consensus size: 59
12283511 CCAACTGTGT
*
12283521 TGATATGGGCAAGGCCCAATATA-TCGTGACT-TGTAATAGGGCTACGGCCCAGATTGATAC
1 TGATATGGGCAAGGCCCAATATACTC-TGA-TATGTAA-AGGGCTACGGCCCAGATTAATAC
* * * * *
12283581 TGATATGGGCTAGGCCTAATATACTCTGATACTGTAAGGGGCTATGGCCCAGATTAATAT
1 TGATATGGGCAAGGCCCAATATACTCTGATA-TGTAAAGGGCTACGGCCCAGATTAATAC
12283641 TGATATGGGCTAAGGCCCA
1 TGATATGGGC-AAGGCCCA
12283660 GTTAACACTA
Statistics
Matches: 67, Mismatches: 8, Indels: 7
0.82 0.10 0.09
Matches are distributed among these distances:
59 1 0.01
60 53 0.79
61 13 0.19
ACGTcount: A:0.28, C:0.19, G:0.27, T:0.27
Consensus pattern (59 bp):
TGATATGGGCAAGGCCCAATATACTCTGATATGTAAAGGGCTACGGCCCAGATTAATAC
Found at i:12288622 original size:37 final size:37
Alignment explanation
Indices: 12288581--12288656 Score: 152
Period size: 37 Copynumber: 2.1 Consensus size: 37
12288571 AAACGTCATT
12288581 AACTAAGTGTCACAATTCACATATTTAGTCATATTCC
1 AACTAAGTGTCACAATTCACATATTTAGTCATATTCC
12288618 AACTAAGTGTCACAATTCACATATTTAGTCATATTCC
1 AACTAAGTGTCACAATTCACATATTTAGTCATATTCC
12288655 AA
1 AA
12288657 GCATTCTTTT
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 39 1.00
ACGTcount: A:0.37, C:0.21, G:0.08, T:0.34
Consensus pattern (37 bp):
AACTAAGTGTCACAATTCACATATTTAGTCATATTCC
Found at i:12288648 original size:19 final size:19
Alignment explanation
Indices: 12288589--12288648 Score: 54
Period size: 19 Copynumber: 3.2 Consensus size: 19
12288579 TTAACTAAGT
12288589 GTCACAATTCACATATTTA
1 GTCACAATTCACATATTTA
* * *
12288608 GTCA-TATTC-CA-ACTAA
1 GTCACAATTCACATATTTA
12288624 GTGTCACAATTCACATATTTA
1 --GTCACAATTCACATATTTA
12288645 GTCA
1 GTCA
12288649 TATTCCAAGC
Statistics
Matches: 30, Mismatches: 6, Indels: 10
0.65 0.13 0.22
Matches are distributed among these distances:
16 3 0.10
17 2 0.07
18 8 0.27
19 12 0.40
20 2 0.07
21 3 0.10
ACGTcount: A:0.35, C:0.22, G:0.08, T:0.35
Consensus pattern (19 bp):
GTCACAATTCACATATTTA
Found at i:12288752 original size:10 final size:10
Alignment explanation
Indices: 12288715--12288759 Score: 54
Period size: 10 Copynumber: 4.4 Consensus size: 10
12288705 ATATTTTAAA
12288715 ACATATCAATC
1 ACATAT-AATC
*
12288726 ACATATAAGC
1 ACATATAATC
* *
12288736 ACGTATAATT
1 ACATATAATC
12288746 ACATATAATC
1 ACATATAATC
12288756 ACAT
1 ACAT
12288760 TTAGTCACAG
Statistics
Matches: 28, Mismatches: 6, Indels: 1
0.80 0.17 0.03
Matches are distributed among these distances:
10 22 0.79
11 6 0.21
ACGTcount: A:0.47, C:0.20, G:0.04, T:0.29
Consensus pattern (10 bp):
ACATATAATC
Found at i:12298061 original size:13 final size:13
Alignment explanation
Indices: 12298043--12298070 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
12298033 TTTAGCTAAA
12298043 AATGGGCTGTTAC
1 AATGGGCTGTTAC
12298056 AATGGGCTGTTAC
1 AATGGGCTGTTAC
12298069 AA
1 AA
12298071 AATTTGTAAC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.29, C:0.14, G:0.29, T:0.29
Consensus pattern (13 bp):
AATGGGCTGTTAC
Found at i:12299880 original size:42 final size:41
Alignment explanation
Indices: 12299774--12299933 Score: 126
Period size: 43 Copynumber: 3.7 Consensus size: 41
12299764 ACATGTGTTC
* * *
12299774 TCGTGTAAGACTACGTCTGGGACATCAGTATCG-ACTTATGATT
1 TCGTGTAAGAC-CCGTCTGGGACATCGGCATCGTA-TT-TGATT
* ** *
12299817 TATGTGTAAGACGATGCCTGGGACATCGGCATCGTATTTGATT
1 T-CGTGTAAGAC-CCGTCTGGGACATCGGCATCGTATTTGATT
*
12299860 TCGTGTAAGACCCTGTCTGGGACAGT-GGCATCGATATTTAATT
1 TCGTGTAAGACCC-GTCTGGGACA-TCGGCATCG-TATTTGATT
* * *
12299903 ACATGTAAGACCACGTCTGGGACATTGGCAT
1 TCGTGTAAGACC-CGTCTGGGACATCGGCAT
12299934 TGTACGAGCT
Statistics
Matches: 97, Mismatches: 13, Indels: 14
0.78 0.10 0.11
Matches are distributed among these distances:
42 26 0.27
43 41 0.42
44 29 0.30
45 1 0.01
ACGTcount: A:0.25, C:0.19, G:0.26, T:0.31
Consensus pattern (41 bp):
TCGTGTAAGACCCGTCTGGGACATCGGCATCGTATTTGATT
Found at i:12314661 original size:20 final size:20
Alignment explanation
Indices: 12314636--12314673 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
12314626 ACTTAATCGA
12314636 GACTTTT-AAGAATTTTTCAT
1 GACTTTTCAA-AATTTTTCAT
12314656 GACTTTTCAAAATTTTTC
1 GACTTTTCAAAATTTTTC
12314674 CAAGGTGCAA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
20 15 0.88
21 2 0.12
ACGTcount: A:0.29, C:0.13, G:0.08, T:0.50
Consensus pattern (20 bp):
GACTTTTCAAAATTTTTCAT
Found at i:12315290 original size:14 final size:15
Alignment explanation
Indices: 12315262--12315290 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
12315252 TGATCACTAC
12315262 TTAACATATATATGG
1 TTAACATATATATGG
12315277 TTAACATA-ATATGG
1 TTAACATATATATGG
12315291 CATTACAAGT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 6 0.43
15 8 0.57
ACGTcount: A:0.41, C:0.07, G:0.14, T:0.38
Consensus pattern (15 bp):
TTAACATATATATGG
Done.