Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A06
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 115140250
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2234201 characters in sequence are not A, C, G, or T
File 44 of 345
Found at i:12842195 original size:43 final size:43
Alignment explanation
Indices: 12842098--12842317 Score: 221
Period size: 43 Copynumber: 5.2 Consensus size: 43
12842088 AGCGCCGCAA
* * * *
12842098 AAAGACCAAGACCTTTAGCGGCGC-TCT-TAAAAAATGCCGCC
1 AAAGACCAGGACCTTTAGCGGCGCTTTTATAAAAAACGCCGCT
* * * *
12842139 AAAGATCAAGACCTTTAGCGGCG-TTTTTTATAAAAGCGCCGCT
1 AAAGACCAGGACCTTTAGCGGCGCTTTTATA-AAAAACGCCGCT
** *
12842182 AAAGACCAGGACCTTTAGCGGCATTTTTTTAAAAAACGCCGCT
1 AAAGACCAGGACCTTTAGCGGCGCTTTTATAAAAAACGCCGCT
* * * * *
12842225 ATAGACCTGTACTTTTAGCGGCGCATTTATAAAAAACGCCGCT
1 AAAGACCAGGACCTTTAGCGGCGCTTTTATAAAAAACGCCGCT
* * * *
12842268 ATAGACCTGCACTTTTAGCGGCGCTTTTATAAAAAACGCCGCT
1 AAAGACCAGGACCTTTAGCGGCGCTTTTATAAAAAACGCCGCT
*
12842311 ATAGACC
1 AAAGACC
12842318 TGTACTTTTA
Statistics
Matches: 156, Mismatches: 19, Indels: 6
0.86 0.10 0.03
Matches are distributed among these distances:
41 24 0.15
42 2 0.01
43 123 0.79
44 7 0.04
ACGTcount: A:0.31, C:0.25, G:0.19, T:0.25
Consensus pattern (43 bp):
AAAGACCAGGACCTTTAGCGGCGCTTTTATAAAAAACGCCGCT
Found at i:12842318 original size:43 final size:43
Alignment explanation
Indices: 12842152--12842328 Score: 239
Period size: 43 Copynumber: 4.1 Consensus size: 43
12842142 GATCAAGACC
* * * * * *
12842152 TTTAGCGGCG-TTTTTTATAAAAGCGCCGCTAAAGACCAGGACC
1 TTTAGCGGCGCTTTTATA-AAAAACGCCGCTATAGACCTGTACT
** *
12842195 TTTAGCGGCATTTTTTTAAAAAACGCCGCTATAGACCTGTACT
1 TTTAGCGGCGCTTTTATAAAAAACGCCGCTATAGACCTGTACT
* *
12842238 TTTAGCGGCGCATTTATAAAAAACGCCGCTATAGACCTGCACT
1 TTTAGCGGCGCTTTTATAAAAAACGCCGCTATAGACCTGTACT
12842281 TTTAGCGGCGCTTTTATAAAAAACGCCGCTATAGACCTGTACT
1 TTTAGCGGCGCTTTTATAAAAAACGCCGCTATAGACCTGTACT
12842324 TTTAG
1 TTTAG
12842329 TGTAGACCAA
Statistics
Matches: 120, Mismatches: 13, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
43 113 0.94
44 7 0.06
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (43 bp):
TTTAGCGGCGCTTTTATAAAAAACGCCGCTATAGACCTGTACT
Found at i:12843329 original size:18 final size:18
Alignment explanation
Indices: 12843297--12843334 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 18
12843287 CACAATATAG
12843297 TAGTAAAAATATTATTTAA
1 TAGTAAAAATATTA-TTAA
*
12843316 TAGTAAAAA-GTTATTAA
1 TAGTAAAAATATTATTAA
12843333 TA
1 TA
12843335 CTTGATAGAT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
17 6 0.33
18 3 0.17
19 9 0.50
ACGTcount: A:0.53, C:0.00, G:0.08, T:0.39
Consensus pattern (18 bp):
TAGTAAAAATATTATTAA
Found at i:12848914 original size:21 final size:21
Alignment explanation
Indices: 12848890--12848929 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
12848880 AAATTAATTC
*
12848890 ATACTTAAGTTGAATCAAATA
1 ATACTTAAGTTGAACCAAATA
12848911 ATACTTAAGTTGAACCAAA
1 ATACTTAAGTTGAACCAAA
12848930 ATATAAAAAC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.47, C:0.12, G:0.10, T:0.30
Consensus pattern (21 bp):
ATACTTAAGTTGAACCAAATA
Found at i:12851215 original size:133 final size:133
Alignment explanation
Indices: 12850994--12851245 Score: 477
Period size: 133 Copynumber: 1.9 Consensus size: 133
12850984 GAATTCAACA
* *
12850994 ATATAAAACGTGAGCAACAAGATAGCAATAAACTCTTAAATTAATCTAAGTCCACACTAAACACA
1 ATATAAAACGTGAGCAACAAGACAGCAATAAACTCTTAAATCAATCTAAGTCCACACTAAACACA
12851059 TAAGTTGGATAGAAACATGAAAACAGACCAAAAGAACATCTAAATAACCAAAATATAACAATTTT
66 TAAGTTGGATAGAAACATGAAAACAGACCAAAAGAACATCTAAATAACCAAAATATAACAATTTT
12851124 ATT
131 ATT
*
12851127 ATATAAAACGTGAGCAACAAGACAGCATTAAACTCTTAAATCAATCTAAGTCCACACTAAACACA
1 ATATAAAACGTGAGCAACAAGACAGCAATAAACTCTTAAATCAATCTAAGTCCACACTAAACACA
12851192 TAAGTTGGATAGAAACATGAAAACAGACCAAAAGAACATCTAAATAACCAAAAT
66 TAAGTTGGATAGAAACATGAAAACAGACCAAAAGAACATCTAAATAACCAAAAT
12851246 GGAATCACCA
Statistics
Matches: 116, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
133 116 1.00
ACGTcount: A:0.51, C:0.18, G:0.10, T:0.21
Consensus pattern (133 bp):
ATATAAAACGTGAGCAACAAGACAGCAATAAACTCTTAAATCAATCTAAGTCCACACTAAACACA
TAAGTTGGATAGAAACATGAAAACAGACCAAAAGAACATCTAAATAACCAAAATATAACAATTTT
ATT
Found at i:12853853 original size:10 final size:11
Alignment explanation
Indices: 12853833--12853881 Score: 55
Period size: 11 Copynumber: 4.3 Consensus size: 11
12853823 ACTAAACCAC
12853833 TTTTCATATATA
1 TTTT-ATATATA
12853845 -TTTATATATA
1 TTTTATATATA
*
12853855 TTTTAAAATAATA
1 TTTT-ATAT-ATA
12853868 TTTTATATATA
1 TTTTATATATA
12853879 TTT
1 TTT
12853882 ATCTTATATA
Statistics
Matches: 32, Mismatches: 2, Indels: 7
0.78 0.05 0.17
Matches are distributed among these distances:
10 7 0.22
11 12 0.38
12 6 0.19
13 7 0.22
ACGTcount: A:0.39, C:0.02, G:0.00, T:0.59
Consensus pattern (11 bp):
TTTTATATATA
Found at i:12853890 original size:15 final size:15
Alignment explanation
Indices: 12853870--12853901 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
12853860 AAATAATATT
*
12853870 TTATATATATTTATC
1 TTATATACATTTATC
12853885 TTATATACATTTATC
1 TTATATACATTTATC
12853900 TT
1 TT
12853902 CTAAATTAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.31, C:0.09, G:0.00, T:0.59
Consensus pattern (15 bp):
TTATATACATTTATC
Found at i:12854780 original size:14 final size:14
Alignment explanation
Indices: 12854761--12854800 Score: 53
Period size: 14 Copynumber: 2.9 Consensus size: 14
12854751 ATTAAACCTG
* *
12854761 CTTAAACCATATAT
1 CTTAAACCATAAAC
12854775 CTTAAACCATAAAC
1 CTTAAACCATAAAC
*
12854789 CTTAAACTATAA
1 CTTAAACCATAA
12854801 TGATAATTAA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
14 23 1.00
ACGTcount: A:0.47, C:0.23, G:0.00, T:0.30
Consensus pattern (14 bp):
CTTAAACCATAAAC
Found at i:12855019 original size:41 final size:41
Alignment explanation
Indices: 12854962--12855303 Score: 467
Period size: 41 Copynumber: 8.4 Consensus size: 41
12854952 GGTTATGGGA
12854962 TTTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTGG
1 TTTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTGG
* * *
12855003 TTTTTAGCGGCATTTTACCAAAAACGCCTCTAATGCTCTGG
1 TTTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTGG
* * * *
12855044 TTTTTAGCGGCGTTTTAACTAAAGCGACGCTAATGCTCTAG
1 TTTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTGG
* * *
12855085 TTTTTAGCGGCGTTTTACCGAAAGCGCAGCTAATGCTCT-A
1 TTTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTGG
* * * *
12855125 TTTTTAGCGGCATTTTACCGAAAGCGCCGCTAATGCCCT-A
1 TTTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTGG
*
12855165 TTTTTAGCGGCGTTTTA-TAGAAAGCGCCGCTAATGCTCTGG
1 TTTTTAGCGGCGTTTTACCA-AAAGCGCCGCTAATGCTCTGG
* *
12855206 TTTTTAGCGGCGTTTTACCTAAAGCGCTGCTAATGCTCTGG
1 TTTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTGG
**
12855247 TTTTTAGCGGCGTTTTACTGAAAGCGCCGCTAATGCTCT-G
1 TTTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTGG
*
12855287 TTTTTAGCGGCATTTTA
1 TTTTTAGCGGCGTTTTA
12855304 GTGAAAAATG
Statistics
Matches: 268, Mismatches: 30, Indels: 7
0.88 0.10 0.02
Matches are distributed among these distances:
40 88 0.33
41 180 0.67
ACGTcount: A:0.21, C:0.22, G:0.23, T:0.35
Consensus pattern (41 bp):
TTTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTGG
Found at i:12855230 original size:162 final size:163
Alignment explanation
Indices: 12854961--12855303 Score: 530
Period size: 162 Copynumber: 2.1 Consensus size: 163
12854951 GGGTTATGGG
* * *
12854961 ATTTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTGGTTTTTAGCGGCATTTTACCAAAA
1 ATTTTTAGCGGCATTTTACCAAAAGCGCCGCTAATGCCCTGATTTTTAGCGGCATTTTACCAAAA
*
12855026 ACGCCTCTAATGCTCTGGTTTTTAGCGGCGTTTTAACTAAAGCGAC-GCTAATGCTCTAGTTTTT
66 ACGCCGCTAATGCTCTGGTTTTTAGCGGCGTTTTAACTAAAGCG-CTGCTAATGCTCTAGTTTTT
12855090 AGCGGCGTTTTACCGAAAGCGCAGCTAATGCTCT
130 AGCGGCGTTTTACCGAAAGCGCAGCTAATGCTCT
* * *
12855124 ATTTTTAGCGGCATTTTACCGAAAGCGCCGCTAATGCCCT-ATTTTTAGCGGCGTTTTA-TAGAA
1 ATTTTTAGCGGCATTTTACCAAAAGCGCCGCTAATGCCCTGATTTTTAGCGGCATTTTACCA-AA
* * *
12855187 AGCGCCGCTAATGCTCTGGTTTTTAGCGGCGTTTTACCTAAAGCGCTGCTAATGCTCTGGTTTTT
65 AACGCCGCTAATGCTCTGGTTTTTAGCGGCGTTTTAACTAAAGCGCTGCTAATGCTCTAGTTTTT
* *
12855252 AGCGGCGTTTTACTGAAAGCGCCGCTAATGCTCT
130 AGCGGCGTTTTACCGAAAGCGCAGCTAATGCTCT
*
12855286 GTTTTTAGCGGCATTTTA
1 ATTTTTAGCGGCATTTTA
12855304 GTGAAAAATG
Statistics
Matches: 165, Mismatches: 13, Indels: 5
0.90 0.07 0.03
Matches are distributed among these distances:
161 2 0.01
162 126 0.76
163 37 0.22
ACGTcount: A:0.21, C:0.22, G:0.22, T:0.34
Consensus pattern (163 bp):
ATTTTTAGCGGCATTTTACCAAAAGCGCCGCTAATGCCCTGATTTTTAGCGGCATTTTACCAAAA
ACGCCGCTAATGCTCTGGTTTTTAGCGGCGTTTTAACTAAAGCGCTGCTAATGCTCTAGTTTTTA
GCGGCGTTTTACCGAAAGCGCAGCTAATGCTCT
Found at i:12871736 original size:49 final size:49
Alignment explanation
Indices: 12871577--12871756 Score: 218
Period size: 49 Copynumber: 3.6 Consensus size: 49
12871567 ATACGCATAA
* **
12871577 TAGCCTGCACTTAGTACTACACACGTGACCTAACCATCTGATACACGTAG
1 TAGCCTGCACTTAGTACTACACAAGTGACC-AATTATCTGATACACGTAG
* * *
12871627 TAGCCTGCACTTAGTACTACACAAGTGATCGAAGTTATC-GAGTACGCATAG
1 TAGCCTGCACTTAGTACTACACAAGTGA-CCAA-TTATCTGA-TACACGTAG
* * * *
12871678 TAGCTTGCACTTAGTACTACACATGCGACCAATTATCTGATACATGTAG
1 TAGCCTGCACTTAGTACTACACAAGTGACCAATTATCTGATACACGTAG
*
12871727 TAGCCTGCACTTAGTACTACACACGTGACC
1 TAGCCTGCACTTAGTACTACACAAGTGACC
12871757 TCACAATAGA
Statistics
Matches: 110, Mismatches: 16, Indels: 9
0.81 0.12 0.07
Matches are distributed among these distances:
49 38 0.35
50 36 0.33
51 36 0.33
ACGTcount: A:0.30, C:0.26, G:0.18, T:0.26
Consensus pattern (49 bp):
TAGCCTGCACTTAGTACTACACAAGTGACCAATTATCTGATACACGTAG
Found at i:12871742 original size:100 final size:101
Alignment explanation
Indices: 12871568--12871754 Score: 295
Period size: 100 Copynumber: 1.9 Consensus size: 101
12871558 AGCTATCAGA
*
12871568 TACGCATAATAGCCTGCACTTAGTACTACACACGTGACCTAACCATCTGATACACGTAGTAGCCT
1 TACGCATAATAGCCTGCACTTAGTACTACACACGCGACCTAACCATCTGATACACGTAGTAGCCT
12871633 GCACTTAGTACTACACAAGTGATCGAAGTTATCGAG
66 GCACTTAGTACTACACAAGTGATCGAAGTTATCGAG
* * * ** *
12871669 TACGCATAGTAGCTTGCACTTAGTACTACACATGCGACC-AATTATCTGATACATGTAGTAGCCT
1 TACGCATAATAGCCTGCACTTAGTACTACACACGCGACCTAACCATCTGATACACGTAGTAGCCT
*
12871733 GCACTTAGTACTACACACGTGA
66 GCACTTAGTACTACACAAGTGA
12871755 CCTCACAATA
Statistics
Matches: 78, Mismatches: 8, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
100 43 0.55
101 35 0.45
ACGTcount: A:0.31, C:0.25, G:0.18, T:0.26
Consensus pattern (101 bp):
TACGCATAATAGCCTGCACTTAGTACTACACACGCGACCTAACCATCTGATACACGTAGTAGCCT
GCACTTAGTACTACACAAGTGATCGAAGTTATCGAG
Found at i:12876871 original size:50 final size:49
Alignment explanation
Indices: 12876758--12876886 Score: 186
Period size: 50 Copynumber: 2.6 Consensus size: 49
12876748 CTGGTACGCA
* * ** *
12876758 TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCAACCATCCGATACACG
* *
12876807 TAGTAGCCTACACTTAGTACTACACACGTGACCTAACCATCTGATACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACC-AACCATCCGATACACG
12876857 TAGTAGCCTGCACTTAGTACTACACACGTG
1 TAGTAGCCTGCACTTAGTACTACACACGTG
12876887 CCTCACAATA
Statistics
Matches: 71, Mismatches: 8, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
49 30 0.42
50 41 0.58
ACGTcount: A:0.29, C:0.29, G:0.17, T:0.25
Consensus pattern (49 bp):
TAGTAGCCTGCACTTAGTACTACACACGTGACCAACCATCCGATACACG
Found at i:12879199 original size:14 final size:14
Alignment explanation
Indices: 12879177--12879206 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
12879167 AAAAAATGGT
*
12879177 CCGATTGAACCGAA
1 CCGAGTGAACCGAA
12879191 CCGAGTGAACCGAA
1 CCGAGTGAACCGAA
12879205 CC
1 CC
12879207 TGCCAGGAAG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.33, C:0.33, G:0.23, T:0.10
Consensus pattern (14 bp):
CCGAGTGAACCGAA
Found at i:12882026 original size:43 final size:43
Alignment explanation
Indices: 12881971--12882298 Score: 444
Period size: 43 Copynumber: 7.6 Consensus size: 43
12881961 ATGTGTGCGA
* *
12881971 GTAAGACCACGTCTGGGACGTTGCCATCGATATGTGATTATGT
1 GTAAGACCACGTCTGGGACGTTGGCATCGATATGTGATTACGT
* * *
12882014 GTAAAACTACGTCTGGGACGTTGGCATTGATATGTGATTACGT
1 GTAAGACCACGTCTGGGACGTTGGCATCGATATGTGATTACGT
* * *
12882057 GTAAGTCCACGTCTGGGATGTTAGCATCGATATGTGATTACGT
1 GTAAGACCACGTCTGGGACGTTGGCATCGATATGTGATTACGT
* *
12882100 GTAAGACCACGTCTGGGACGTTGGCATCGATAGGTGATTACAT
1 GTAAGACCACGTCTGGGACGTTGGCATCGATATGTGATTACGT
***
12882143 GTAAGACCATAACTGGGACGTTGGCATCGATATGTGATTACGT
1 GTAAGACCACGTCTGGGACGTTGGCATCGATATGTGATTACGT
* * *
12882186 GTAAGACCACGTCTGGGACGTTGGCATTGATATGTGTTTACGA
1 GTAAGACCACGTCTGGGACGTTGGCATCGATATGTGATTACGT
* *
12882229 GTAAGACC-CTGTTTGGGACAG-TGGCATCGATATGTGATTACAT
1 GTAAGACCAC-GTCTGGGAC-GTTGGCATCGATATGTGATTACGT
* *
12882272 GTAAGACCACATCTAGGACGTTGGCAT
1 GTAAGACCACGTCTGGGACGTTGGCAT
12882299 TGTACGATAT
Statistics
Matches: 246, Mismatches: 35, Indels: 8
0.85 0.12 0.03
Matches are distributed among these distances:
42 2 0.01
43 242 0.98
44 2 0.01
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.29
Consensus pattern (43 bp):
GTAAGACCACGTCTGGGACGTTGGCATCGATATGTGATTACGT
Found at i:12884186 original size:17 final size:17
Alignment explanation
Indices: 12884164--12884201 Score: 76
Period size: 17 Copynumber: 2.2 Consensus size: 17
12884154 AGACACGTTT
12884164 ATTGATTTGCAAGGAGA
1 ATTGATTTGCAAGGAGA
12884181 ATTGATTTGCAAGGAGA
1 ATTGATTTGCAAGGAGA
12884198 ATTG
1 ATTG
12884202 TTATGTACAG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 21 1.00
ACGTcount: A:0.34, C:0.05, G:0.29, T:0.32
Consensus pattern (17 bp):
ATTGATTTGCAAGGAGA
Found at i:12889155 original size:50 final size:49
Alignment explanation
Indices: 12889042--12889170 Score: 186
Period size: 50 Copynumber: 2.6 Consensus size: 49
12889032 CTGGTACGCA
* * ** *
12889042 TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCAACCATCCGATACACG
* *
12889091 TAGTAGCCTACACTTAGTACTACACACGTGACCTAACCATCTGATACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACC-AACCATCCGATACACG
12889141 TAGTAGCCTGCACTTAGTACTACACACGTG
1 TAGTAGCCTGCACTTAGTACTACACACGTG
12889171 GCCTCACAAT
Statistics
Matches: 71, Mismatches: 8, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
49 30 0.42
50 41 0.58
ACGTcount: A:0.29, C:0.29, G:0.17, T:0.25
Consensus pattern (49 bp):
TAGTAGCCTGCACTTAGTACTACACACGTGACCAACCATCCGATACACG
Found at i:12891486 original size:14 final size:14
Alignment explanation
Indices: 12891464--12891493 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
12891454 AAAAAATGGT
*
12891464 CCGATTGAACCGAA
1 CCGAGTGAACCGAA
12891478 CCGAGTGAACCGAA
1 CCGAGTGAACCGAA
12891492 CC
1 CC
12891494 TGCCAGGAAG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.33, C:0.33, G:0.23, T:0.10
Consensus pattern (14 bp):
CCGAGTGAACCGAA
Found at i:12894313 original size:43 final size:43
Alignment explanation
Indices: 12894258--12894585 Score: 444
Period size: 43 Copynumber: 7.6 Consensus size: 43
12894248 ATGTGTGCGA
* *
12894258 GTAAGACCACGTCTGGGACGTTGCCATCGATATGTGATTATGT
1 GTAAGACCACGTCTGGGACGTTGGCATCGATATGTGATTACGT
* * *
12894301 GTAAAACTACGTCTGGGACGTTGGCATTGATATGTGATTACGT
1 GTAAGACCACGTCTGGGACGTTGGCATCGATATGTGATTACGT
* * *
12894344 GTAAGTCCACGTCTGGGATGTTAGCATCGATATGTGATTACGT
1 GTAAGACCACGTCTGGGACGTTGGCATCGATATGTGATTACGT
* *
12894387 GTAAGACCACGTCTGGGACGTTGGCATCGATAGGTGATTACAT
1 GTAAGACCACGTCTGGGACGTTGGCATCGATATGTGATTACGT
***
12894430 GTAAGACCATAACTGGGACGTTGGCATCGATATGTGATTACGT
1 GTAAGACCACGTCTGGGACGTTGGCATCGATATGTGATTACGT
* * *
12894473 GTAAGACCACGTCTGGGACGTTGGCATTGATATGTGTTTACGA
1 GTAAGACCACGTCTGGGACGTTGGCATCGATATGTGATTACGT
* *
12894516 GTAAGACC-CTGTTTGGGACAG-TGGCATCGATATGTGATTACAT
1 GTAAGACCAC-GTCTGGGAC-GTTGGCATCGATATGTGATTACGT
* *
12894559 GTAAGACCACATCTAGGACGTTGGCAT
1 GTAAGACCACGTCTGGGACGTTGGCAT
12894586 TGTACGATAT
Statistics
Matches: 246, Mismatches: 35, Indels: 8
0.85 0.12 0.03
Matches are distributed among these distances:
42 2 0.01
43 242 0.98
44 2 0.01
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.29
Consensus pattern (43 bp):
GTAAGACCACGTCTGGGACGTTGGCATCGATATGTGATTACGT
Found at i:12896469 original size:17 final size:17
Alignment explanation
Indices: 12896447--12896484 Score: 76
Period size: 17 Copynumber: 2.2 Consensus size: 17
12896437 AGACACGTTT
12896447 ATTGATTTGCAAGGAGA
1 ATTGATTTGCAAGGAGA
12896464 ATTGATTTGCAAGGAGA
1 ATTGATTTGCAAGGAGA
12896481 ATTG
1 ATTG
12896485 TTATGTACAG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 21 1.00
ACGTcount: A:0.34, C:0.05, G:0.29, T:0.32
Consensus pattern (17 bp):
ATTGATTTGCAAGGAGA
Found at i:12903920 original size:12 final size:12
Alignment explanation
Indices: 12903903--12903938 Score: 54
Period size: 12 Copynumber: 3.0 Consensus size: 12
12903893 TCGATTGAAA
12903903 TGATTTGAGGAG
1 TGATTTGAGGAG
*
12903915 TGATTTGAGAAG
1 TGATTTGAGGAG
*
12903927 GGATTTGAGGAG
1 TGATTTGAGGAG
12903939 GAAAATAAGG
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
12 21 1.00
ACGTcount: A:0.28, C:0.00, G:0.42, T:0.31
Consensus pattern (12 bp):
TGATTTGAGGAG
Found at i:12907805 original size:28 final size:29
Alignment explanation
Indices: 12907752--12907806 Score: 85
Period size: 28 Copynumber: 1.9 Consensus size: 29
12907742 ATAGGGGTTT
* *
12907752 TCACACGGCCTGGCACACAGCCGTGTCCC
1 TCACACGGCCTCGCACACACCCGTGTCCC
12907781 TCACACGGCCTCG-ACACACCCGTGTC
1 TCACACGGCCTCGCACACACCCGTGTC
12907807 TCAGCTCGTG
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
28 12 0.50
29 12 0.50
ACGTcount: A:0.18, C:0.45, G:0.22, T:0.15
Consensus pattern (29 bp):
TCACACGGCCTCGCACACACCCGTGTCCC
Found at i:12910003 original size:66 final size:66
Alignment explanation
Indices: 12909919--12910109 Score: 285
Period size: 66 Copynumber: 2.9 Consensus size: 66
12909909 GGTGAACACT
* *
12909919 TAGTACCACCCATGTGACCTAGCCAGTTTATCTCGTAGCTCTCTTGTATACATGGTGTCTTTCAC
1 TAGTACCACCCATGTGACCTAGCCAGTTTATCTCGTAGCTCTCTTGTCTACATGGTGTCCTTCAC
12909984 C
66 C
*
12909985 TAGTACCACCCATGTGACCTAGCCAGTTTATCTCATAGCTCTCTTGTCTACATGGTGTCCTTCAC
1 TAGTACCACCCATGTGACCTAGCCAGTTTATCTCGTAGCTCTCTTGTCTACATGGTGTCCTTCAC
12910050 C
66 C
* * * * *
12910051 TAGAACCACACATGCGACCTAGCTACA-TATATCCCGTAGCTCTCTTGTCTACATGGTGT
1 TAGTACCACCCATGTGACCTAGC--CAGTTTATCTCGTAGCTCTCTTGTCTACATGGTGT
12910110 ACACATAGTA
Statistics
Matches: 114, Mismatches: 9, Indels: 3
0.90 0.07 0.02
Matches are distributed among these distances:
66 83 0.73
67 29 0.25
68 2 0.02
ACGTcount: A:0.21, C:0.30, G:0.16, T:0.32
Consensus pattern (66 bp):
TAGTACCACCCATGTGACCTAGCCAGTTTATCTCGTAGCTCTCTTGTCTACATGGTGTCCTTCAC
C
Found at i:12912145 original size:45 final size:45
Alignment explanation
Indices: 12912080--12912203 Score: 164
Period size: 46 Copynumber: 2.7 Consensus size: 45
12912070 AGGGTATAAT
12912080 GCCGATGCCATGTCCCAGACATGGTCTTACACTGA-C-ACATCTCGTA-
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACT-ATCTACATCTCG-AG
*
12912126 GCCGATGCATGTCCCAGACATGTCTTACACTATCTTACATGTCGAG
1 GCCGATGCATGTCCCAGACATGTCTTACACTATC-TACATCTCGAG
*
12912172 GCTGATGCATGTCCCAGACATGTCTTACACTA
1 GCCGATGCATGTCCCAGACATGTCTTACACTA
12912204 GCTCTCGTCT
Statistics
Matches: 72, Mismatches: 2, Indels: 8
0.88 0.02 0.10
Matches are distributed among these distances:
43 1 0.01
44 11 0.15
45 15 0.21
46 45 0.62
ACGTcount: A:0.24, C:0.30, G:0.19, T:0.27
Consensus pattern (45 bp):
GCCGATGCATGTCCCAGACATGTCTTACACTATCTACATCTCGAG
Found at i:12912227 original size:22 final size:22
Alignment explanation
Indices: 12912199--12912242 Score: 70
Period size: 22 Copynumber: 2.0 Consensus size: 22
12912189 ACATGTCTTA
* *
12912199 CACTAGCTCTCGTCTTAATGCC
1 CACTAGCTCTCATCTCAATGCC
12912221 CACTAGCTCTCATCTCAATGCC
1 CACTAGCTCTCATCTCAATGCC
12912243 AATGTCATGT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.20, C:0.39, G:0.11, T:0.30
Consensus pattern (22 bp):
CACTAGCTCTCATCTCAATGCC
Found at i:12926128 original size:39 final size:39
Alignment explanation
Indices: 12926033--12926218 Score: 153
Period size: 39 Copynumber: 4.8 Consensus size: 39
12926023 ACTTGAAACC
** * *
12926033 AATTACCAGCACA-AGCCTGCGGGAATTTAAACCCGG-TAT
1 AATT-CCAGCACATAGCCTGC-GGACCTTAAGCCCGGACAT
* * * *
12926072 AATACCAGCTCAAAGCCTGCGGGA-CTTTAGCCCGGACAT
1 AATTCCAGCACATAGCCTGC-GGACCTTAAGCCCGGACAT
* ** * * *
12926111 ATTTCCAGCATGTAGCCTACGGACCTTAAGTCCGGATAT
1 AATTCCAGCACATAGCCTGCGGACCTTAAGCCCGGACAT
* * * *
12926150 AATTCCAGCACATAGCCTGTGGACCCTAAGTCCGGATAT
1 AATTCCAGCACATAGCCTGCGGACCTTAAGCCCGGACAT
*
12926189 AATTCCAGCACATAGCCTGCGGACCCTAAG
1 AATTCCAGCACATAGCCTGCGGACCTTAAG
12926219 TCCGAATATA
Statistics
Matches: 121, Mismatches: 23, Indels: 6
0.81 0.15 0.04
Matches are distributed among these distances:
38 18 0.15
39 103 0.85
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (39 bp):
AATTCCAGCACATAGCCTGCGGACCTTAAGCCCGGACAT
Found at i:12926158 original size:78 final size:78
Alignment explanation
Indices: 12926065--12926228 Score: 179
Period size: 78 Copynumber: 2.1 Consensus size: 78
12926055 GAATTTAAAC
* * * * **
12926065 CCGG-TATAATACCAGCTCAAAGCCTGCGGGA-CTTTAGCCCGGACATATTTCCAGCATGTAGCC
1 CCGGATATAATACCAGCACAAAGCCTG-GGGACCCTAAGCCCGGACATAATTCCAGCACATAGCC
*
12926128 TACGGACCTTAAGT
65 TACGGACCCTAAGT
* * * * *
12926142 CCGGATATAATTCCAGCACATAGCCTGTGGACCCTAAGTCCGGATATAATTCCAGCACATAGCCT
1 CCGGATATAATACCAGCACAAAGCCTGGGGACCCTAAGCCCGGACATAATTCCAGCACATAGCCT
*
12926207 GCGGACCCTAAGT
66 ACGGACCCTAAGT
*
12926220 CCGAATATA
1 CCGGATATA
12926229 CATCACTGAA
Statistics
Matches: 71, Mismatches: 14, Indels: 3
0.81 0.16 0.03
Matches are distributed among these distances:
77 7 0.10
78 64 0.90
ACGTcount: A:0.28, C:0.29, G:0.21, T:0.23
Consensus pattern (78 bp):
CCGGATATAATACCAGCACAAAGCCTGGGGACCCTAAGCCCGGACATAATTCCAGCACATAGCCT
ACGGACCCTAAGT
Found at i:12926219 original size:39 final size:39
Alignment explanation
Indices: 12926103--12926228 Score: 180
Period size: 39 Copynumber: 3.2 Consensus size: 39
12926093 GGACTTTAGC
* * ** * *
12926103 CCGGACATATTTCCAGCATGTAGCCTACGGACCTTAAGT
1 CCGGATATAATTCCAGCACATAGCCTGCGGACCCTAAGT
*
12926142 CCGGATATAATTCCAGCACATAGCCTGTGGACCCTAAGT
1 CCGGATATAATTCCAGCACATAGCCTGCGGACCCTAAGT
12926181 CCGGATATAATTCCAGCACATAGCCTGCGGACCCTAAGT
1 CCGGATATAATTCCAGCACATAGCCTGCGGACCCTAAGT
*
12926220 CCGAATATA
1 CCGGATATA
12926229 CATCACTGAA
Statistics
Matches: 78, Mismatches: 9, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
39 78 1.00
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.23
Consensus pattern (39 bp):
CCGGATATAATTCCAGCACATAGCCTGCGGACCCTAAGT
Found at i:12928785 original size:27 final size:26
Alignment explanation
Indices: 12928751--12928948 Score: 200
Period size: 27 Copynumber: 7.4 Consensus size: 26
12928741 TGGATAAGTT
12928751 GTAGAATTACCGAAATACGCCTGTAAG
1 GTAGAATTACCGAAATAC-CCTGTAAG
*** *
12928778 GTAGAATTATTAAAATACCCTATAAG
1 GTAGAATTACCGAAATACCCTGTAAG
* *
12928804 GTAGAATTACCAAAATACCCTTGTAGG
1 GTAGAATTACCGAAATACCC-TGTAAG
* *
12928831 GTAGAAATACTGAAATACCCTTGTAAG
1 GTAGAATTACCGAAATACCC-TGTAAG
* * *
12928858 GTAGAAATACCGAAATACCCCTATAGG
1 GTAGAATTACCGAAATA-CCCTGTAAG
** *
12928885 GTAGAATTATTGAAATACCCCTGTAGG
1 GTAGAATTACCGAAATA-CCCTGTAAG
12928912 GTAGAATTACCGAAATACCCCTGT-AG
1 GTAGAATTACCGAAATA-CCCTGTAAG
12928938 GATAGAATTAC
1 G-TAGAATTAC
12928949 TGAGGTAGAA
Statistics
Matches: 146, Mismatches: 22, Indels: 6
0.84 0.13 0.03
Matches are distributed among these distances:
26 27 0.18
27 116 0.79
28 3 0.02
ACGTcount: A:0.39, C:0.17, G:0.19, T:0.25
Consensus pattern (26 bp):
GTAGAATTACCGAAATACCCTGTAAG
Found at i:12928875 original size:54 final size:53
Alignment explanation
Indices: 12928751--12928951 Score: 267
Period size: 54 Copynumber: 3.8 Consensus size: 53
12928741 TGGATAAGTT
* * * * *
12928751 GTAGAATTACCGAAATACGCCTGTAAGGTAGAATTATTAAAATACCCTATAAG
1 GTAGAATTACCGAAATACCCCTGTAGGGTAGAATTACTGAAATACCCTGTAAG
* * *
12928804 GTAGAATTACCAAAATACCCTTGTAGGGTAGAAATACTGAAATACCCTTGTAAG
1 GTAGAATTACCGAAATACCCCTGTAGGGTAGAATTACTGAAATACCC-TGTAAG
* * * *
12928858 GTAGAAATACCGAAATACCCCTATAGGGTAGAATTATTGAAATACCCCTGTAGG
1 GTAGAATTACCGAAATACCCCTGTAGGGTAGAATTACTGAAATA-CCCTGTAAG
*
12928912 GTAGAATTACCGAAATACCCCTGTAGGATAGAATTACTGA
1 GTAGAATTACCGAAATACCCCTGTAGGGTAGAATTACTGA
12928952 GGTAGAAATA
Statistics
Matches: 127, Mismatches: 19, Indels: 3
0.85 0.13 0.02
Matches are distributed among these distances:
53 40 0.31
54 84 0.66
55 3 0.02
ACGTcount: A:0.39, C:0.17, G:0.19, T:0.25
Consensus pattern (53 bp):
GTAGAATTACCGAAATACCCCTGTAGGGTAGAATTACTGAAATACCCTGTAAG
Found at i:12928913 original size:81 final size:79
Alignment explanation
Indices: 12928751--12928944 Score: 237
Period size: 81 Copynumber: 2.4 Consensus size: 79
12928741 TGGATAAGTT
* **
12928751 GTAGAATTACCGAAATACGCCTGTAAGGTAGAATTATTAAAATACCCTATAAGGTAGAATTACCA
1 GTAGAATTACCGAAATAC-CCTGTAAGGTAGAAATACCAAAATACCCTATAAGGTAGAATTACCA
*
12928816 AAATACCCTTGTAGG
65 AAATACCCCTGTAGG
* * * * **
12928831 GTAGAAATACTGAAATACCCTTGTAAGGTAGAAATACCGAAATACCCCTATAGGGTAGAATTATT
1 GTAGAATTACCGAAATACCC-TGTAAGGTAGAAATACCAAAATA-CCCTATAAGGTAGAATTACC
*
12928896 GAAATACCCCTGTAGG
64 AAAATACCCCTGTAGG
12928912 GTAGAATTACCGAAATACCCCTGT-AGGATAGAA
1 GTAGAATTACCGAAATA-CCCTGTAAGG-TAGAA
12928945 TTACTGAGGT
Statistics
Matches: 97, Mismatches: 13, Indels: 7
0.83 0.11 0.06
Matches are distributed among these distances:
79 2 0.02
80 38 0.39
81 54 0.56
82 3 0.03
ACGTcount: A:0.39, C:0.17, G:0.19, T:0.25
Consensus pattern (79 bp):
GTAGAATTACCGAAATACCCTGTAAGGTAGAAATACCAAAATACCCTATAAGGTAGAATTACCAA
AATACCCCTGTAGG
Found at i:12928968 original size:41 final size:41
Alignment explanation
Indices: 12928911--12928988 Score: 120
Period size: 41 Copynumber: 1.9 Consensus size: 41
12928901 ACCCCTGTAG
* *
12928911 GGTAGAATTACCGAAATACCCCTGTAGGATAGAATTACTGA
1 GGTAGAAATACCGAAATACCCCTGTAGGATAAAATTACTGA
* *
12928952 GGTAGAAATACCGAAATACCCCTTTAGGGTAAAATTA
1 GGTAGAAATACCGAAATACCCCTGTAGGATAAAATTA
12928989 TCGAGATACC
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
41 33 1.00
ACGTcount: A:0.38, C:0.17, G:0.21, T:0.24
Consensus pattern (41 bp):
GGTAGAAATACCGAAATACCCCTGTAGGATAAAATTACTGA
Found at i:12929788 original size:71 final size:67
Alignment explanation
Indices: 12929648--12929789 Score: 194
Period size: 71 Copynumber: 2.1 Consensus size: 67
12929638 GAGGAAGCGT
* * * *
12929648 TCTGGCATCCTCGCTGCAATCTGGTGGCTTCGCCATATATATCTGTTCTGGTGACATTGTCACAA
1 TCTGGCAGCCTCACTGCAATCTGGTGGCTTCGCCATATATATCTGTTCTGGTGACATAGCCACAA
12929713 TA
66 TA
* *
12929715 TCTGGCAGCCTCACTGCAATCTGGTGGCTTCGCCACATATATATATCTGTTCTGGTGGCCTAGCC
1 TCTGGCAGCCTCACTGCAATCTGGTGGCTTCG-C-C--ATATATATCTGTTCTGGTGACATAGCC
12929780 ACAATA
62 ACAATA
12929786 TCTG
1 TCTG
12929790 TATCTGGTGA
Statistics
Matches: 65, Mismatches: 6, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
67 30 0.46
68 1 0.02
69 1 0.02
71 33 0.51
ACGTcount: A:0.20, C:0.27, G:0.21, T:0.32
Consensus pattern (67 bp):
TCTGGCAGCCTCACTGCAATCTGGTGGCTTCGCCATATATATCTGTTCTGGTGACATAGCCACAA
TA
Found at i:12929809 original size:27 final size:26
Alignment explanation
Indices: 12929757--12929815 Score: 73
Period size: 27 Copynumber: 2.2 Consensus size: 26
12929747 CCACATATAT
*
12929757 ATATCTGTTCTGGTGGCCTAGCCACA
1 ATATCTGTTCTGGTGACCTAGCCACA
* * *
12929783 ATATCTGTATCTGGTGACTTCGTCACA
1 ATATCTGT-TCTGGTGACCTAGCCACA
12929810 ATATCT
1 ATATCT
12929816 AGCAGCGTCG
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 8 0.29
27 20 0.71
ACGTcount: A:0.22, C:0.24, G:0.19, T:0.36
Consensus pattern (26 bp):
ATATCTGTTCTGGTGACCTAGCCACA
Found at i:12936605 original size:27 final size:27
Alignment explanation
Indices: 12936563--12936838 Score: 256
Period size: 27 Copynumber: 10.4 Consensus size: 27
12936553 TGGATAAGTT
*
12936563 GTAGAATTACTGAAATACCCCTGTAGG
1 GTAGAATTACCGAAATACCCCTGTAGG
*** *
12936590 GTAGAATTATTAAAATACCTCTGTAGG
1 GTAGAATTACCGAAATACCCCTGTAGG
* *
12936617 GTAGAATTACCGAAATTCCCTTGTAGG
1 GTAGAATTACCGAAATACCCCTGTAGG
* * *
12936644 GTAGAAATACAGAAATACCCTTGTA--
1 GTAGAATTACCGAAATACCCCTGTAGG
*
12936669 G--GAA-TACCGAAATACCCCTATAGG
1 GTAGAATTACCGAAATACCCCTGTAGG
** *
12936693 GTAGAATTATTGAAATACCCATGTAGG
1 GTAGAATTACCGAAATACCCCTGTAGG
12936720 GTAGAATTACCGAAATACCCCTGTAGG
1 GTAGAATTACCGAAATACCCCTGTAGG
* * * *
12936747 ATAGAATTACTGAAATACCCTTATAGG
1 GTAGAATTACCGAAATACCCCTGTAGG
* * * * *
12936774 GTAGAAATACCAAAATACTCTTGTCGG
1 GTAGAATTACCGAAATACCCCTGTAGG
* * * * *
12936801 GTAGAGTTACCGAGATACCCTTATGGG
1 GTAGAATTACCGAAATACCCCTGTAGG
*
12936828 GTAAAATTACC
1 GTAGAATTACC
12936839 ATTTTGCCCC
Statistics
Matches: 202, Mismatches: 42, Indels: 10
0.80 0.17 0.04
Matches are distributed among these distances:
22 15 0.07
23 3 0.01
24 1 0.00
25 1 0.00
26 3 0.01
27 179 0.89
ACGTcount: A:0.36, C:0.17, G:0.20, T:0.26
Consensus pattern (27 bp):
GTAGAATTACCGAAATACCCCTGTAGG
Found at i:12936674 original size:22 final size:22
Alignment explanation
Indices: 12936644--12936685 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
12936634 CCCTTGTAGG
12936644 GTAGAAATACAGAAATACCCTT
1 GTAGAAATACAGAAATACCCTT
* *
12936666 GTAGGAATACCGAAATACCC
1 GTAGAAATACAGAAATACCC
12936686 CTATAGGGTA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.43, C:0.21, G:0.17, T:0.19
Consensus pattern (22 bp):
GTAGAAATACAGAAATACCCTT
Found at i:12936692 original size:22 final size:22
Alignment explanation
Indices: 12936649--12936692 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
12936639 GTAGGGTAGA
* *
12936649 AATACAGAAATACCCTTGTAGG
1 AATACAGAAATACCCCTATAGG
*
12936671 AATACCGAAATACCCCTATAGG
1 AATACAGAAATACCCCTATAGG
12936693 GTAGAATTAT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.41, C:0.23, G:0.16, T:0.20
Consensus pattern (22 bp):
AATACAGAAATACCCCTATAGG
Found at i:12936745 original size:103 final size:104
Alignment explanation
Indices: 12936561--12936773 Score: 315
Period size: 103 Copynumber: 2.1 Consensus size: 104
12936551 AGTGGATAAG
* *
12936561 TTGTA-GAATTACTGAAATACCCCTGTAGGGTAGAATTATTAAAATACCTCTGTAGGGTAGAATT
1 TTGTAGGAATTACCGAAATACCCCTATAGGGTAGAATTATTAAAATACCTCTGTAGGGTAGAATT
* * *
12936625 ACCGAAATTCCCTTGTAGGGTAGAAATACAGAAATACCC
66 ACCGAAATACCCCTGTAGGATAGAAATACAGAAATACCC
*
12936664 TTGTAGGAA-TACCGAAATACCCCTATAGGGTAGAATTATTGAAATACC-CATGTAGGGTAGAAT
1 TTGTAGGAATTACCGAAATACCCCTATAGGGTAGAATTATTAAAATACCTC-TGTAGGGTAGAAT
* *
12936727 TACCGAAATACCCCTGTAGGATAGAATTACTGAAATACCC
65 TACCGAAATACCCCTGTAGGATAGAAATACAGAAATACCC
*
12936767 TTATAGG
1 TTGTAGG
12936774 GTAGAAATAC
Statistics
Matches: 99, Mismatches: 9, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
102 1 0.01
103 95 0.96
104 3 0.03
ACGTcount: A:0.36, C:0.17, G:0.20, T:0.27
Consensus pattern (104 bp):
TTGTAGGAATTACCGAAATACCCCTATAGGGTAGAATTATTAAAATACCTCTGTAGGGTAGAATT
ACCGAAATACCCCTGTAGGATAGAAATACAGAAATACCC
Found at i:12936797 original size:130 final size:130
Alignment explanation
Indices: 12936563--12936797 Score: 355
Period size: 130 Copynumber: 1.8 Consensus size: 130
12936553 TGGATAAGTT
* ** * *
12936563 GTAGAATTACTGAAATACCCCTGTAGGGTAGAATTATTAAAATACCTCTGTAGGGTAGAATTACC
1 GTAGAATTACTGAAATACCCATGTAGGGTAGAATTACCAAAATACCCCTGTAGGATAGAATTACC
* *
12936628 GAAATTCCCTTGTAGGGTAGAAATACAGAAATACCCTTGTAGGAATACCGAAATACCCCTATAGG
66 GAAATACCCTTATAGGGTAGAAATACAGAAATACCCTTGTAGGAATACCGAAATACCCCTATAGG
* * *
12936693 GTAGAATTATTGAAATACCCATGTAGGGTAGAATTACCGAAATACCCCTGTAGGATAGAATTACT
1 GTAGAATTACTGAAATACCCATGTAGGGTAGAATTACCAAAATACCCCTGTAGGATAGAATTACC
*
12936758 GAAATACCCTTATAGGGTAGAAATACCA-AAATACTCTTGT
66 GAAATACCCTTATAGGGTAGAAATA-CAGAAATACCCTTGT
12936798 CGGGTAGAGT
Statistics
Matches: 93, Mismatches: 11, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
130 91 0.98
131 2 0.02
ACGTcount: A:0.37, C:0.17, G:0.19, T:0.27
Consensus pattern (130 bp):
GTAGAATTACTGAAATACCCATGTAGGGTAGAATTACCAAAATACCCCTGTAGGATAGAATTACC
GAAATACCCTTATAGGGTAGAAATACAGAAATACCCTTGTAGGAATACCGAAATACCCCTATAGG
Found at i:12936883 original size:27 final size:26
Alignment explanation
Indices: 12936839--12936892 Score: 74
Period size: 27 Copynumber: 2.0 Consensus size: 26
12936829 TAAAATTACC
12936839 ATTTTGCCCCTAAGGTGTTAAATGACT
1 ATTTTGCCCCTAAGGTG-TAAATGACT
*
12936866 ATTTTGCCCCT-CGTGTGTAAATGACT
1 ATTTTGCCCCTAAG-GTGTAAATGACT
12936892 A
1 A
12936893 ACTTGTGTGA
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
26 11 0.44
27 14 0.56
ACGTcount: A:0.24, C:0.20, G:0.19, T:0.37
Consensus pattern (26 bp):
ATTTTGCCCCTAAGGTGTAAATGACT
Found at i:12941808 original size:25 final size:25
Alignment explanation
Indices: 12941761--12941808 Score: 60
Period size: 25 Copynumber: 1.9 Consensus size: 25
12941751 TTATATTATG
* * * *
12941761 AAAATGACTGTTTTGCCCGTAGGTA
1 AAAATGACCGTTATACCCCTAGGTA
12941786 AAAATGACCGTTATACCCCTAGG
1 AAAATGACCGTTATACCCCTAGG
12941809 GTTTACTTAT
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 19 1.00
ACGTcount: A:0.31, C:0.21, G:0.21, T:0.27
Consensus pattern (25 bp):
AAAATGACCGTTATACCCCTAGGTA
Found at i:12941869 original size:20 final size:20
Alignment explanation
Indices: 12941844--12941910 Score: 118
Period size: 20 Copynumber: 3.4 Consensus size: 20
12941834 ATTTTGATAT
12941844 ACATGAT-TGATATGATATGC
1 ACATGATATG-TATGATATGC
12941864 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
12941884 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
12941904 ACATGAT
1 ACATGAT
12941911 GTATTCATAA
Statistics
Matches: 46, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
20 44 0.96
21 2 0.04
ACGTcount: A:0.36, C:0.10, G:0.19, T:0.34
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:12941871 original size:11 final size:11
Alignment explanation
Indices: 12941855--12941910 Score: 66
Period size: 11 Copynumber: 5.5 Consensus size: 11
12941845 CATGATTGAT
12941855 ATGATATGCAC
1 ATGATATGCAC
*
12941866 ATGATATG--T
1 ATGATATGCAC
12941875 ATGATATGCAC
1 ATGATATGCAC
*
12941886 ATGATATG--T
1 ATGATATGCAC
12941895 ATGATATGCAC
1 ATGATATGCAC
12941906 ATGAT
1 ATGAT
12941911 GTATTCATAA
Statistics
Matches: 37, Mismatches: 4, Indels: 8
0.76 0.08 0.16
Matches are distributed among these distances:
9 16 0.43
11 21 0.57
ACGTcount: A:0.36, C:0.11, G:0.20, T:0.34
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:12942080 original size:25 final size:26
Alignment explanation
Indices: 12941960--12942083 Score: 169
Period size: 26 Copynumber: 4.8 Consensus size: 26
12941950 GAGGAAGTGC
* *
12941960 AAAAGGGTTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATCG
* *
12941986 AAAAGGGCTTATACCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTATCG
* *
12942012 AAAAGGGCTTATGCCCTAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTATCG
*
12942038 AAAAGGGCTTATGACCCAGTTTATCG
1 AAAAGGGCTTATGCCCCAGTTTATCG
*
12942064 -AAAGGGCTTTTGCCCCAGTT
1 AAAAGGGCTTATGCCCCAGTT
12942084 ATTGAAAGAG
Statistics
Matches: 87, Mismatches: 11, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
25 18 0.21
26 69 0.79
ACGTcount: A:0.27, C:0.22, G:0.23, T:0.28
Consensus pattern (26 bp):
AAAAGGGCTTATGCCCCAGTTTATCG
Found at i:12942683 original size:18 final size:18
Alignment explanation
Indices: 12942660--12942694 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
12942650 ACTTAAGACG
*
12942660 TGTTTTCAAAACGACACT
1 TGTTTTCAAAACAACACT
*
12942678 TGTTTTCCAAACAACAC
1 TGTTTTCAAAACAACAC
12942695 AACGTTACGA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.34, C:0.26, G:0.09, T:0.31
Consensus pattern (18 bp):
TGTTTTCAAAACAACACT
Found at i:12948034 original size:48 final size:48
Alignment explanation
Indices: 12947959--12948108 Score: 149
Period size: 48 Copynumber: 3.1 Consensus size: 48
12947949 CACATGGTAG
* * * * * *
12947959 GATGCCAATGCCATATCCCGAATATGGTCTTTCATAGGATCACATATC
1 GATGCCAATACCATGTCCAGGACATGGTCTTACATAGGATCACATATC
* ** ** *
12948007 GATGCTAATACCATGTCCCA-GACATGGTCTTACATAGGATCGTAGGTT
1 GATGCCAATACCATGT-CCAGGACATGGTCTTACATAGGATCACATATC
* * *
12948055 GATGCCAATGCCATGTCTAGGACATGGTCTTACATGGGATCACATATC
1 GATGCCAATACCATGTCCAGGACATGGTCTTACATAGGATCACATATC
12948103 GATGCC
1 GATGCC
12948109 GATAGCCTAG
Statistics
Matches: 79, Mismatches: 21, Indels: 4
0.76 0.20 0.04
Matches are distributed among these distances:
47 2 0.03
48 75 0.95
49 2 0.03
ACGTcount: A:0.27, C:0.23, G:0.21, T:0.28
Consensus pattern (48 bp):
GATGCCAATACCATGTCCAGGACATGGTCTTACATAGGATCACATATC
Found at i:12949296 original size:52 final size:52
Alignment explanation
Indices: 12949218--12949318 Score: 202
Period size: 52 Copynumber: 1.9 Consensus size: 52
12949208 CATTTTGCAA
12949218 CTTTTGTAATTTAGTCCTAATTATCAAATTGGACACTTTATCAATAGAACAG
1 CTTTTGTAATTTAGTCCTAATTATCAAATTGGACACTTTATCAATAGAACAG
12949270 CTTTTGTAATTTAGTCCTAATTATCAAATTGGACACTTTATCAATAGAA
1 CTTTTGTAATTTAGTCCTAATTATCAAATTGGACACTTTATCAATAGAA
12949319 TTTCTTCATG
Statistics
Matches: 49, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
52 49 1.00
ACGTcount: A:0.35, C:0.15, G:0.11, T:0.40
Consensus pattern (52 bp):
CTTTTGTAATTTAGTCCTAATTATCAAATTGGACACTTTATCAATAGAACAG
Found at i:12951591 original size:40 final size:38
Alignment explanation
Indices: 12951527--12951621 Score: 109
Period size: 40 Copynumber: 2.4 Consensus size: 38
12951517 TTATCTCAGT
*
12951527 ATCGAACACTTAGTGCCTTATATAGCCAAAGCTATTCCA
1 ATCGCACACTTAGTG-CTTATATAGCCAAAGCTATTCCA
* * * **
12951566 ACTCGCACACTTAGTGCTATTTATAGCCGAAGCTGTTTGA
1 A-TCGCACACTTAGTGCT-TATATAGCCAAAGCTATTCCA
12951606 ATCGCACACTTAGTGC
1 ATCGCACACTTAGTGC
12951622 CAAACATAGT
Statistics
Matches: 48, Mismatches: 6, Indels: 4
0.83 0.10 0.07
Matches are distributed among these distances:
39 18 0.38
40 30 0.62
ACGTcount: A:0.28, C:0.25, G:0.17, T:0.29
Consensus pattern (38 bp):
ATCGCACACTTAGTGCTTATATAGCCAAAGCTATTCCA
Found at i:12955166 original size:40 final size:40
Alignment explanation
Indices: 12955108--12955300 Score: 273
Period size: 40 Copynumber: 4.8 Consensus size: 40
12955098 GTATGATATT
* *
12955108 TGGAATTGTACCCAGGCTTAAAGACCCGCAGGCTATATGC
1 TGGAATTGTATCCGGGCTTAAAGACCCGCAGGCTATATGC
* *
12955148 TGGAATTGTATCTGGGCTTAAAGACCCGCGGGCTATATGC
1 TGGAATTGTATCCGGGCTTAAAGACCCGCAGGCTATATGC
* *
12955188 TGGAATTGTGTCCGGGCTTAAGGACCCGCAGGCTATATGC
1 TGGAATTGTATCCGGGCTTAAAGACCCGCAGGCTATATGC
* *
12955228 TGGAATTGTATCCGGGCATAAAGACCCGCAGGCT-TCGTGC
1 TGGAATTGTATCCGGGCTTAAAGACCCGCAGGCTAT-ATGC
* *
12955268 TGGAATGGTATCCGGG-TTAAAGACCCGTAGGCT
1 TGGAATTGTATCCGGGCTTAAAGACCCGCAGGCT
12955301 TGCTCTAGAA
Statistics
Matches: 137, Mismatches: 15, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
39 16 0.12
40 121 0.88
ACGTcount: A:0.23, C:0.22, G:0.30, T:0.24
Consensus pattern (40 bp):
TGGAATTGTATCCGGGCTTAAAGACCCGCAGGCTATATGC
Found at i:12960028 original size:40 final size:40
Alignment explanation
Indices: 12959971--12960117 Score: 206
Period size: 40 Copynumber: 3.7 Consensus size: 40
12959961 GTATGATTTT
*
12959971 TGGAATTGTATCCGGGCTTAAAGACCCGCTGGCTATGTGC
1 TGGAATTGTATCCGGGCTTAAAGACCCGCAGGCTATGTGC
* ** *
12960011 TAGAATTGTATTTGGGCTTAAAGACCCGCAGGCTATATGC
1 TGGAATTGTATCCGGGCTTAAAGACCCGCAGGCTATGTGC
* * *
12960051 TGGAATTGTATTCGGGCATAAAGACCCGCAGGCTTTGTGC
1 TGGAATTGTATCCGGGCTTAAAGACCCGCAGGCTATGTGC
*
12960091 TGGAATGGTATCCGGG-TTAAAGACCCG
1 TGGAATTGTATCCGGGCTTAAAGACCCG
12960118 TACGCTTGCG
Statistics
Matches: 94, Mismatches: 13, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
39 10 0.11
40 84 0.89
ACGTcount: A:0.24, C:0.20, G:0.29, T:0.27
Consensus pattern (40 bp):
TGGAATTGTATCCGGGCTTAAAGACCCGCAGGCTATGTGC
Found at i:12960350 original size:53 final size:53
Alignment explanation
Indices: 12960270--12960376 Score: 214
Period size: 53 Copynumber: 2.0 Consensus size: 53
12960260 CTATGTACTC
12960270 ACATGTGAAATGATTTCAAGTGAATTATTAGTATTAAAGAACGATATATATAT
1 ACATGTGAAATGATTTCAAGTGAATTATTAGTATTAAAGAACGATATATATAT
12960323 ACATGTGAAATGATTTCAAGTGAATTATTAGTATTAAAGAACGATATATATAT
1 ACATGTGAAATGATTTCAAGTGAATTATTAGTATTAAAGAACGATATATATAT
12960376 A
1 A
12960377 TGTGTGTGTG
Statistics
Matches: 54, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
53 54 1.00
ACGTcount: A:0.44, C:0.06, G:0.15, T:0.36
Consensus pattern (53 bp):
ACATGTGAAATGATTTCAAGTGAATTATTAGTATTAAAGAACGATATATATAT
Found at i:12965646 original size:43 final size:42
Alignment explanation
Indices: 12965598--12965715 Score: 105
Period size: 43 Copynumber: 2.8 Consensus size: 42
12965588 AGCTCGTACA
*
12965598 ATGCCAACATCCCAGACATGGTCTTACATGTAATCAAACACCG
1 ATGCCAACATCCTAGACATGGTCTTACATGTAATCAAACA-CG
* * * * * *
12965641 ATGCC-ACTGTCCTAGACAGGGTCTTATACGAAATCAAATACG
1 ATGCCAAC-ATCCTAGACATGGTCTTACATGTAATCAAACACG
* * *
12965683 ATG-CAGATATCCTAGACATTGTTTTACATGTAA
1 ATGCCA-ACATCCTAGACATGGTCTTACATGTAA
12965716 ATCTCAAATC
Statistics
Matches: 57, Mismatches: 15, Indels: 7
0.72 0.19 0.09
Matches are distributed among these distances:
41 1 0.02
42 25 0.44
43 31 0.54
ACGTcount: A:0.34, C:0.24, G:0.16, T:0.26
Consensus pattern (42 bp):
ATGCCAACATCCTAGACATGGTCTTACATGTAATCAAACACG
Found at i:12979915 original size:43 final size:43
Alignment explanation
Indices: 12979795--12979915 Score: 111
Period size: 43 Copynumber: 2.8 Consensus size: 43
12979785 AGCTCGTACA
* * * * *
12979795 ATGCC-ATATCCCAGATATGGTCTTACATTTTATCACATATCG
1 ATGCCAATGTCCCAGACATGGTCTTACATGTAATCACATAACG
* * ** * * *
12979837 ATGCCACTGTCCCAAACGGGGTCTTATACGAAATCA-AGTAACG
1 ATGCCAATGTCCCAGACATGGTCTTACATGTAATCACA-TAACG
12979880 ATGCCAATGTCCCAGACATGGTCTTACATGTAATCA
1 ATGCCAATGTCCCAGACATGGTCTTACATGTAATCA
12979916 TATCTCGATA
Statistics
Matches: 58, Mismatches: 19, Indels: 3
0.73 0.24 0.04
Matches are distributed among these distances:
42 6 0.10
43 52 0.90
ACGTcount: A:0.31, C:0.25, G:0.17, T:0.28
Consensus pattern (43 bp):
ATGCCAATGTCCCAGACATGGTCTTACATGTAATCACATAACG
Found at i:12980459 original size:29 final size:29
Alignment explanation
Indices: 12980404--12980458 Score: 85
Period size: 28 Copynumber: 1.9 Consensus size: 29
12980394 TTTATTTCAT
12980404 AATTTAACCCCTCAATTTTCACATTTTAC
1 AATTTAACCCCTCAATTTTCACATTTTAC
* *
12980433 AATTTAATCCCT-AATTTTGACATTTT
1 AATTTAACCCCTCAATTTTCACATTTT
12980459 TGTCGAAAAT
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
28 13 0.54
29 11 0.46
ACGTcount: A:0.31, C:0.22, G:0.02, T:0.45
Consensus pattern (29 bp):
AATTTAACCCCTCAATTTTCACATTTTAC
Found at i:12991583 original size:26 final size:27
Alignment explanation
Indices: 12991528--12991587 Score: 79
Period size: 27 Copynumber: 2.3 Consensus size: 27
12991518 GCGAGGCTGC
12991528 CAGATATTGTGACGAAGTCACCAGATA
1 CAGATATTGTGACGAAGTCACCAGATA
* *
12991555 CAGATATTGTGGC-TAGTCCACCAGA-A
1 CAGATATTGTGACGAAGT-CACCAGATA
12991581 CAGATAT
1 CAGATAT
12991588 ATATATATGT
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
26 11 0.37
27 19 0.63
ACGTcount: A:0.35, C:0.20, G:0.22, T:0.23
Consensus pattern (27 bp):
CAGATATTGTGACGAAGTCACCAGATA
Found at i:12992356 original size:26 final size:27
Alignment explanation
Indices: 12992326--12992474 Score: 185
Period size: 27 Copynumber: 5.6 Consensus size: 27
12992316 ACCCCATGAG
*
12992326 GGTATCTCGGTAATTCTACCCTACA-A
1 GGTATTTCGGTAATTCTACCCTACAGA
* *
12992352 GGTATTTCAGTATTTCTACCCTACA-A
1 GGTATTTCGGTAATTCTACCCTACAGA
*
12992378 GGGTATTTCGATAATTCTACCCTACAGA
1 -GGTATTTCGGTAATTCTACCCTACAGA
* *
12992406 GGTATTTCAGTAATTCTACCCTACAGG
1 GGTATTTCGGTAATTCTACCCTACAGA
* * * *
12992433 GGTATTTCGATAATTCTACCTTATAGG
1 GGTATTTCGGTAATTCTACCCTACAGA
12992460 GGTATTTCGGTAATT
1 GGTATTTCGGTAATT
12992475 TTACAAGCTA
Statistics
Matches: 107, Mismatches: 14, Indels: 3
0.86 0.11 0.02
Matches are distributed among these distances:
26 23 0.21
27 83 0.78
28 1 0.01
ACGTcount: A:0.26, C:0.20, G:0.17, T:0.36
Consensus pattern (27 bp):
GGTATTTCGGTAATTCTACCCTACAGA
Found at i:12992427 original size:54 final size:54
Alignment explanation
Indices: 12992324--12992474 Score: 223
Period size: 54 Copynumber: 2.8 Consensus size: 54
12992314 TTACCCCATG
* * *
12992324 AGGGTATCTCGGTAATTCTACCCTACA-AGGTATTTCAGTATTTCTACCCTACA
1 AGGGTATTTCGATAATTCTACCCTACAGAGGTATTTCAGTAATTCTACCCTACA
12992377 AGGGTATTTCGATAATTCTACCCTACAGAGGTATTTCAGTAATTCTACCCTACA
1 AGGGTATTTCGATAATTCTACCCTACAGAGGTATTTCAGTAATTCTACCCTACA
* * * * *
12992431 GGGGTATTTCGATAATTCTACCTTATAGGGGTATTTCGGTAATT
1 AGGGTATTTCGATAATTCTACCCTACAGAGGTATTTCAGTAATT
12992475 TTACAAGCTA
Statistics
Matches: 89, Mismatches: 8, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
53 25 0.28
54 64 0.72
ACGTcount: A:0.26, C:0.20, G:0.18, T:0.36
Consensus pattern (54 bp):
AGGGTATTTCGATAATTCTACCCTACAGAGGTATTTCAGTAATTCTACCCTACA
Found at i:13029154 original size:19 final size:19
Alignment explanation
Indices: 13029117--13029154 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
13029107 ACCTGTCAGA
*
13029117 AGAAAATAAATGAAGAATT
1 AGAAAATAAATGAAAAATT
13029136 AGAAAATAAAAT-AAAAATT
1 AGAAAAT-AAATGAAAAATT
13029155 TCAATTGCAA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 13 0.76
20 4 0.24
ACGTcount: A:0.68, C:0.00, G:0.11, T:0.21
Consensus pattern (19 bp):
AGAAAATAAATGAAAAATT
Found at i:13032225 original size:25 final size:26
Alignment explanation
Indices: 13032197--13032251 Score: 69
Period size: 25 Copynumber: 2.2 Consensus size: 26
13032187 ATGTATTACA
*
13032197 AATTTTAATGCTTTA-ATGTTAT-ATG
1 AATTTAAATG-TTTATATGTTATCATG
*
13032222 AATTTAAATGTTTATTTGTTATCATG
1 AATTTAAATGTTTATATGTTATCATG
13032248 AATT
1 AATT
13032252 ATATGCCTTG
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
24 4 0.15
25 15 0.58
26 7 0.27
ACGTcount: A:0.33, C:0.04, G:0.11, T:0.53
Consensus pattern (26 bp):
AATTTAAATGTTTATATGTTATCATG
Found at i:13043520 original size:15 final size:16
Alignment explanation
Indices: 13043497--13043529 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 16
13043487 TCAAAATGGC
*
13043497 CAAATCACATTA-AAA
1 CAAAGCACATTACAAA
13043512 CAAAGCACATTACAAA
1 CAAAGCACATTACAAA
13043528 CA
1 CA
13043530 TACACCAAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 11 0.69
16 5 0.31
ACGTcount: A:0.58, C:0.24, G:0.03, T:0.15
Consensus pattern (16 bp):
CAAAGCACATTACAAA
Found at i:13044141 original size:43 final size:41
Alignment explanation
Indices: 13044083--13044230 Score: 145
Period size: 43 Copynumber: 3.5 Consensus size: 41
13044073 CAATGCCGAC
* * *
13044083 GTCCCGGACATGGTCTTACATTTAATTCAATATCGATGCCTCT
1 GTCCCAGACATGGTCTTACA-TAAATTCAA-ATCGATGCCTAT
* * * *
13044126 GTCCCAGACAGGGTCTTACACAAAATCAAATACGATGCCAAT
1 GTCCCAGACATGGTCTTACATAAATTCAAAT-CGATGCCTAT
* *
13044168 GTCCCAGACATGGTCTTACACATAAATCTC-AATCGAGGCCTGT
1 GTCCCAGACATGGTCTT--ACATAAAT-TCAAATCGATGCCTAT
*
13044211 GTCCCAGACACGGTCTTACA
1 GTCCCAGACATGGTCTTACA
13044231 CGATGTCTCA
Statistics
Matches: 87, Mismatches: 14, Indels: 10
0.78 0.13 0.09
Matches are distributed among these distances:
41 5 0.06
42 30 0.34
43 41 0.47
44 9 0.10
45 2 0.02
ACGTcount: A:0.29, C:0.28, G:0.18, T:0.26
Consensus pattern (41 bp):
GTCCCAGACATGGTCTTACATAAATTCAAATCGATGCCTAT
Found at i:13044173 original size:42 final size:44
Alignment explanation
Indices: 13044111--13044231 Score: 149
Period size: 43 Copynumber: 2.8 Consensus size: 44
13044101 CATTTAATTC
* *
13044111 AATATCGATGCCTCTGTCCCAGACAGGGTCTTACACA-AAATC-A
1 AATA-CGATGCCTATGTCCCAGACACGGTCTTACACATAAATCTA
* * *
13044154 AATACGATGCCAATGTCCCAGACATGGTCTTACACATAAATCTC
1 AATACGATGCCTATGTCCCAGACACGGTCTTACACATAAATCTA
* *
13044198 AAT-CGAGGCCTGTGTCCCAGACACGGTCTTACAC
1 AATACGATGCCTATGTCCCAGACACGGTCTTACAC
13044232 GATGTCTCAG
Statistics
Matches: 68, Mismatches: 8, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
42 29 0.43
43 36 0.53
44 3 0.04
ACGTcount: A:0.31, C:0.29, G:0.17, T:0.23
Consensus pattern (44 bp):
AATACGATGCCTATGTCCCAGACACGGTCTTACACATAAATCTA
Found at i:13044231 original size:43 final size:41
Alignment explanation
Indices: 13044109--13044231 Score: 147
Period size: 42 Copynumber: 2.9 Consensus size: 41
13044099 TACATTTAAT
* *
13044109 TCAATATCGATGCCTCTGTCCCAGACAGGGTCTTACACAAAA
1 TCAA-ATCGATGCCTATGTCCCAGACACGGTCTTACACAAAA
* *
13044151 TCAAATACGATGCCAATGTCCCAGACATGGTCTTACACATAAA
1 TCAAAT-CGATGCCTATGTCCCAGACACGGTCTTACACA-AAA
* * *
13044194 TCTCAATCGAGGCCTGTGTCCCAGACACGGTCTTACAC
1 TC-AAATCGATGCCTATGTCCCAGACACGGTCTTACAC
13044232 GATGTCTCAG
Statistics
Matches: 70, Mismatches: 8, Indels: 5
0.84 0.10 0.06
Matches are distributed among these distances:
41 2 0.03
42 33 0.47
43 32 0.46
44 3 0.04
ACGTcount: A:0.30, C:0.29, G:0.17, T:0.24
Consensus pattern (41 bp):
TCAAATCGATGCCTATGTCCCAGACACGGTCTTACACAAAA
Found at i:13046173 original size:22 final size:22
Alignment explanation
Indices: 13046148--13046212 Score: 56
Period size: 22 Copynumber: 3.3 Consensus size: 22
13046138 ATCATAAAAC
13046148 TCATGATATCAACAATGGCATT
1 TCATGATATCAACAATGGCATT
*
13046170 TCATGA-A-CATA-AA----ACT
1 TCATGATATCA-ACAATGGCATT
13046186 -CATGATATCAACAATGGCATT
1 TCATGATATCAACAATGGCATT
13046207 TCATGA
1 TCATGA
13046213 AATCTTTAAC
Statistics
Matches: 32, Mismatches: 2, Indels: 18
0.62 0.04 0.35
Matches are distributed among these distances:
15 5 0.16
16 4 0.12
17 4 0.12
20 4 0.12
21 4 0.12
22 11 0.34
ACGTcount: A:0.40, C:0.18, G:0.12, T:0.29
Consensus pattern (22 bp):
TCATGATATCAACAATGGCATT
Found at i:13046188 original size:37 final size:37
Alignment explanation
Indices: 13046140--13046213 Score: 148
Period size: 37 Copynumber: 2.0 Consensus size: 37
13046130 CCAAAAACAT
13046140 CATAAAACTCATGATATCAACAATGGCATTTCATGAA
1 CATAAAACTCATGATATCAACAATGGCATTTCATGAA
13046177 CATAAAACTCATGATATCAACAATGGCATTTCATGAA
1 CATAAAACTCATGATATCAACAATGGCATTTCATGAA
13046214 ATCTTTAACA
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.43, C:0.19, G:0.11, T:0.27
Consensus pattern (37 bp):
CATAAAACTCATGATATCAACAATGGCATTTCATGAA
Found at i:13052515 original size:18 final size:18
Alignment explanation
Indices: 13052490--13052524 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
13052480 TAGCTAGGCT
13052490 TTTCCTTTTG-TTTTCCC
1 TTTCCTTTTGCTTTTCCC
13052507 TTTCGCTTTTGCTTTTCC
1 TTTC-CTTTTGCTTTTCC
13052525 AAGGTCTTCT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 4 0.25
18 6 0.38
19 6 0.38
ACGTcount: A:0.00, C:0.29, G:0.09, T:0.63
Consensus pattern (18 bp):
TTTCCTTTTGCTTTTCCC
Found at i:13056984 original size:10 final size:10
Alignment explanation
Indices: 13056971--13057015 Score: 54
Period size: 10 Copynumber: 4.3 Consensus size: 10
13056961 CATAATGAAA
13056971 TTTAATTAATT
1 TTTAATTAA-T
13056982 TTATAATTAAT
1 TT-TAATTAAT
*
13056993 TTTGATTAAT
1 TTTAATTAAT
*
13057003 TTTGATTAAT
1 TTTAATTAAT
13057013 TTT
1 TTT
13057016 GACAAATTTG
Statistics
Matches: 32, Mismatches: 1, Indels: 3
0.89 0.03 0.08
Matches are distributed among these distances:
10 20 0.62
11 5 0.16
12 7 0.22
ACGTcount: A:0.33, C:0.00, G:0.04, T:0.62
Consensus pattern (10 bp):
TTTAATTAAT
Found at i:13056987 original size:22 final size:22
Alignment explanation
Indices: 13056962--13057005 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
13056952 AATTATTAAC
13056962 ATAATGAAATTTAATTAATTTT
1 ATAATGAAATTTAATTAATTTT
* * *
13056984 ATAATTAATTTTGATTAATTTT
1 ATAATGAAATTTAATTAATTTT
13057006 GATTAATTTT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.41, C:0.00, G:0.05, T:0.55
Consensus pattern (22 bp):
ATAATGAAATTTAATTAATTTT
Found at i:13057023 original size:20 final size:20
Alignment explanation
Indices: 13056987--13057024 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
13056977 TAATTTTATA
**
13056987 ATTAATTTTGATTAATTTTG
1 ATTAATTTTGACAAATTTTG
13057007 ATTAATTTTGACAAATTT
1 ATTAATTTTGACAAATTT
13057025 GCACAAATGG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.34, C:0.03, G:0.08, T:0.55
Consensus pattern (20 bp):
ATTAATTTTGACAAATTTTG
Found at i:13057024 original size:10 final size:10
Alignment explanation
Indices: 13056987--13057017 Score: 62
Period size: 10 Copynumber: 3.1 Consensus size: 10
13056977 TAATTTTATA
13056987 ATTAATTTTG
1 ATTAATTTTG
13056997 ATTAATTTTG
1 ATTAATTTTG
13057007 ATTAATTTTG
1 ATTAATTTTG
13057017 A
1 A
13057018 CAAATTTGCA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 21 1.00
ACGTcount: A:0.32, C:0.00, G:0.10, T:0.58
Consensus pattern (10 bp):
ATTAATTTTG
Found at i:13074361 original size:47 final size:47
Alignment explanation
Indices: 13074307--13074594 Score: 423
Period size: 47 Copynumber: 6.1 Consensus size: 47
13074297 TTAGGATTTT
** *
13074307 ATGTGATGAATGTGAATGTGTATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
13074354 ATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * * *
13074401 ATGTGGTGAATATGAACATGCATATATGTGATAAGGCCAAATGGCCT
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
*
13074448 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCAAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
13074495 ATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * * * *
13074542 ATGTGGTGAATATGAACATGCATATATGTGGTAAAGCCGAATGGTCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
13074589 ATGTGA
1 ATGTGA
13074595 AATATATATA
Statistics
Matches: 216, Mismatches: 25, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
47 216 1.00
ACGTcount: A:0.33, C:0.11, G:0.29, T:0.27
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
Found at i:13074409 original size:25 final size:25
Alignment explanation
Indices: 13074334--13074409 Score: 63
Period size: 23 Copynumber: 3.2 Consensus size: 25
13074324 GTGTATATAT
13074334 GTGATAAGGCCGAATGGCCAATGTG
1 GTGATAAGGCCGAATGGCCAATGTG
* * * *
13074359 ATGA-ATGTG-AGCAT-G-CATATGT-
1 GTGATAAG-GCCGAATGGCCA-ATGTG
13074381 GTGATAAGGCCGAATGGCCAATGTG
1 GTGATAAGGCCGAATGGCCAATGTG
13074406 GTGA
1 GTGA
13074410 ATATGAACAT
Statistics
Matches: 36, Mismatches: 8, Indels: 14
0.62 0.14 0.24
Matches are distributed among these distances:
22 6 0.17
23 10 0.28
24 10 0.28
25 10 0.28
ACGTcount: A:0.29, C:0.13, G:0.34, T:0.24
Consensus pattern (25 bp):
GTGATAAGGCCGAATGGCCAATGTG
Found at i:13074450 original size:22 final size:22
Alignment explanation
Indices: 13074425--13074501 Score: 66
Period size: 22 Copynumber: 3.4 Consensus size: 22
13074415 AACATGCATA
13074425 TATGTGATAAGGCCAAATGGCC
1 TATGTGATAAGGCCAAATGGCC
* ** *
13074447 TATGTGATGAATGTGAACAT-GCATA
1 TATGTGAT-AAGGCCAA-ATGGC--C
13074472 TATGTGATAAGGCCAAATGGCC
1 TATGTGATAAGGCCAAATGGCC
*
13074494 AATGTGAT
1 TATGTGAT
13074502 GAATGTGAGC
Statistics
Matches: 41, Mismatches: 9, Indels: 10
0.68 0.15 0.17
Matches are distributed among these distances:
22 15 0.37
23 9 0.22
24 9 0.22
25 8 0.20
ACGTcount: A:0.34, C:0.13, G:0.26, T:0.27
Consensus pattern (22 bp):
TATGTGATAAGGCCAAATGGCC
Found at i:13074462 original size:141 final size:141
Alignment explanation
Indices: 13074306--13074594 Score: 497
Period size: 141 Copynumber: 2.0 Consensus size: 141
13074296 TTTAGGATTT
** * *
13074306 TATGTGATGAATGTGAATGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAGC
1 TATGTGATGAATGTGAACATGCATATATGTGATAAGGCCAAATGGCCAATGTGATGAATGTGAGC
*
13074371 ATGCATATGTGTGATAAGGCCGAATGGCCAATGTGGTGAATATGAACATGCATATATGTGATAAG
66 ATGCATATGTGTGATAAGGCCGAATGGCCAATGTGGTGAATATGAACATGCATATATGTGATAAA
13074436 GCCAAATGGCC
131 GCCAAATGGCC
13074447 TATGTGATGAATGTGAACATGCATATATGTGATAAGGCCAAATGGCCAATGTGATGAATGTGAGC
1 TATGTGATGAATGTGAACATGCATATATGTGATAAGGCCAAATGGCCAATGTGATGAATGTGAGC
*
13074512 ATGCATATGTGTGATAAGGCCGAATGGCCAATGTGGTGAATATGAACATGCATATATGTGGTAAA
66 ATGCATATGTGTGATAAGGCCGAATGGCCAATGTGGTGAATATGAACATGCATATATGTGATAAA
* *
13074577 GCCGAATGGTC
131 GCCAAATGGCC
*
13074588 AATGTGA
1 TATGTGA
13074595 AATATATATA
Statistics
Matches: 139, Mismatches: 9, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
141 139 1.00
ACGTcount: A:0.33, C:0.11, G:0.29, T:0.27
Consensus pattern (141 bp):
TATGTGATGAATGTGAACATGCATATATGTGATAAGGCCAAATGGCCAATGTGATGAATGTGAGC
ATGCATATGTGTGATAAGGCCGAATGGCCAATGTGGTGAATATGAACATGCATATATGTGATAAA
GCCAAATGGCC
Found at i:13074645 original size:94 final size:93
Alignment explanation
Indices: 13074329--13074636 Score: 377
Period size: 94 Copynumber: 3.2 Consensus size: 93
13074319 TGAATGTGTA
* *
13074329 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCGA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGA
*
13074394 ATGGCCAATGTGGTGAATATGA-ACATG
66 ATGGCCAATGTGATGAATATGAGACATG
* *
13074421 CATATATGTGATAAGGCCAAATGGCCTATGTGATGAATGTGAACATGCATATATGTGATAAGGCC
1 --TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATATGTGATAAGGCC
* *
13074486 AAATGGCCAATGTGATGAATGTGAG-CATG
64 GAATGGCCAATGTGATGAATATGAGACATG
* * * * *
13074515 CATATGTGTGATAAGGCCGAATGGCCAATGTGGTGAATATGAACATGCATATATGTGGTAAAGCC
1 --TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATATGTGATAAGGCC
* * *
13074580 GAATGGTCAATGTGAAATATATATATGAGATATG
64 GAATGGCCAATGTG--AT-GA-ATATGAGACATG
* *
13074614 TATATGTGGTAAAGCCGAATGGC
1 TATATGTGATAAGGCCGAATGGC
13074637 TAGTGTGAAA
Statistics
Matches: 186, Mismatches: 22, Indels: 9
0.86 0.10 0.04
Matches are distributed among these distances:
94 154 0.83
96 2 0.01
97 21 0.11
98 6 0.03
99 3 0.02
ACGTcount: A:0.33, C:0.12, G:0.28, T:0.27
Consensus pattern (93 bp):
TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGA
ATGGCCAATGTGATGAATATGAGACATG
Found at i:13074907 original size:37 final size:37
Alignment explanation
Indices: 13074807--13074907 Score: 166
Period size: 37 Copynumber: 2.7 Consensus size: 37
13074797 ATTCCAGGTG
*
13074807 AGACCCGATAACTACGTGTGGAGATTATGTCCGGGTA
1 AGACCCGATAACTACGTGTGGAGATTTTGTCCGGGTA
* *
13074844 AGACCCGATGACTACGTGCGGAGATTTTGTCCGGGTA
1 AGACCCGATAACTACGTGTGGAGATTTTGTCCGGGTA
*
13074881 AGACCCGATAACTTCGTGTGGAGATTT
1 AGACCCGATAACTACGTGTGGAGATTT
13074908 CGTCTGAGCT
Statistics
Matches: 58, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
37 58 1.00
ACGTcount: A:0.25, C:0.20, G:0.30, T:0.26
Consensus pattern (37 bp):
AGACCCGATAACTACGTGTGGAGATTTTGTCCGGGTA
Found at i:13081522 original size:33 final size:33
Alignment explanation
Indices: 13081478--13081549 Score: 108
Period size: 33 Copynumber: 2.2 Consensus size: 33
13081468 AGTAAACAAC
*
13081478 ACAGTATCAGTACAGTCTGGGCCAAAGCCCTAT
1 ACAGTAACAGTACAGTCTGGGCCAAAGCCCTAT
* **
13081511 TCAGTAACAGTACAGTCTGGGCCTTAGCCCTAT
1 ACAGTAACAGTACAGTCTGGGCCAAAGCCCTAT
13081544 ACAGTA
1 ACAGTA
13081550 GCATTGTGGG
Statistics
Matches: 34, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
33 34 1.00
ACGTcount: A:0.29, C:0.26, G:0.21, T:0.24
Consensus pattern (33 bp):
ACAGTAACAGTACAGTCTGGGCCAAAGCCCTAT
Found at i:13081548 original size:27 final size:28
Alignment explanation
Indices: 13081517--13081582 Score: 71
Period size: 28 Copynumber: 2.4 Consensus size: 28
13081507 CTATTCAGTA
* * *
13081517 ACAGTA-CAGTCTGGGCCTTAGCCCTAT
1 ACAGTAGCAGTCTGGGCATAAGCCCAAT
* *
13081544 ACAGTAGCATTGTGGGCATAAGCCCAAT
1 ACAGTAGCAGTCTGGGCATAAGCCCAAT
*
13081572 ACAGTATCAGT
1 ACAGTAGCAGT
13081583 ATAAATGCGT
Statistics
Matches: 31, Mismatches: 7, Indels: 1
0.79 0.18 0.03
Matches are distributed among these distances:
27 6 0.19
28 25 0.81
ACGTcount: A:0.29, C:0.24, G:0.23, T:0.24
Consensus pattern (28 bp):
ACAGTAGCAGTCTGGGCATAAGCCCAAT
Found at i:13086910 original size:47 final size:47
Alignment explanation
Indices: 13086889--13087273 Score: 664
Period size: 47 Copynumber: 8.2 Consensus size: 47
13086879 TATACACTTC
*
13086889 CACATTCATCACATTGGCCATTCTGCCTTATCACATATATGCATGTT
1 CACATTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTT
*
13086936 CACATTCATCACATTGGCCATTCGGCCTTATCACATATTTGCATGTT
1 CACATTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTT
*
13086983 CACATTCATCACATTGGCCATTCGGCCTTATCACATATTTGCATGTT
1 CACATTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTT
* *
13087030 CACATTCATCACATTGGCCATTCGGCTTTATCACACATATGCATGTT
1 CACATTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTT
*
13087077 CACATTCATCACATTGGCCATTCGGCCTTATCACATATTTGCATGTT
1 CACATTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTT
* *
13087124 CACATTCATCACATTAGCCATT-GGCCTTATCACACATATGCATGTT
1 CACATTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTT
*
13087170 CACATTCATCACATTGGCCATTCGGCCTTATCACACATATGCATGTT
1 CACATTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTT
* *
13087217 CACATTCATCACATTGGCCATTCGGCCTCATCACACATATGCATGTT
1 CACATTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTT
13087264 CACATTCATC
1 CACATTCATC
13087274 TCATAGAATC
Statistics
Matches: 324, Mismatches: 13, Indels: 2
0.96 0.04 0.01
Matches are distributed among these distances:
46 43 0.13
47 281 0.87
ACGTcount: A:0.25, C:0.29, G:0.12, T:0.34
Consensus pattern (47 bp):
CACATTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTT
Found at i:13086922 original size:22 final size:22
Alignment explanation
Indices: 13086896--13087018 Score: 60
Period size: 22 Copynumber: 5.3 Consensus size: 22
13086886 TTCCACATTC
13086896 ATCACATTGGCCATTCTGCCTT
1 ATCACATTGGCCATTCTGCCTT
*
13086918 ATCACATATATG-CATGT-T-CACATT
1 ATCACAT-T-GGCCAT-TCTGC-C-TT
*
13086942 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCTGCCTT
*
13086965 ATCACATATTTG-CATGT-T-CACATT
1 ATCAC--ATTGGCCAT-TCTGC-C-TT
*
13086989 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCTGCCTT
13087012 ATCACAT
1 ATCACAT
13087019 ATTTGCATGT
Statistics
Matches: 76, Mismatches: 7, Indels: 36
0.64 0.06 0.30
Matches are distributed among these distances:
22 21 0.28
23 21 0.28
24 20 0.26
25 14 0.18
ACGTcount: A:0.24, C:0.28, G:0.12, T:0.35
Consensus pattern (22 bp):
ATCACATTGGCCATTCTGCCTT
Found at i:13089545 original size:40 final size:40
Alignment explanation
Indices: 13089490--13089641 Score: 268
Period size: 40 Copynumber: 3.8 Consensus size: 40
13089480 ATGATATAAT
* * *
13089490 AACTCGTACAAATGCCTTCGGGTCCTAGCCCGGATACAGC
1 AACTCGCACAAATGCCTTCGGGTCTTAGCCCGGATATAGC
13089530 AACTCGCACAAATGCCTTCGGGTCTTAGCCCGGATATAGC
1 AACTCGCACAAATGCCTTCGGGTCTTAGCCCGGATATAGC
*
13089570 AACTCGCACAAATGCCTTCGGGTCTTAGCTCGGATATAGC
1 AACTCGCACAAATGCCTTCGGGTCTTAGCCCGGATATAGC
13089610 AACTCGCACAAATGCCTTCGGGTCTTAGCCCG
1 AACTCGCACAAATGCCTTCGGGTCTTAGCCCG
13089642 ATTATCATCC
Statistics
Matches: 107, Mismatches: 5, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
40 107 1.00
ACGTcount: A:0.24, C:0.31, G:0.22, T:0.22
Consensus pattern (40 bp):
AACTCGCACAAATGCCTTCGGGTCTTAGCCCGGATATAGC
Found at i:13097709 original size:40 final size:40
Alignment explanation
Indices: 13097651--13097818 Score: 284
Period size: 40 Copynumber: 4.2 Consensus size: 40
13097641 TCTTTGGGAT
* *
13097651 TTAG-CCGGATATAACAACTCGTACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAGCAACTCGCACAAATGCCTTCGGGTC
* *
13097690 CTAGCCCGGATACAGCAACTCGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAGCAACTCGCACAAATGCCTTCGGGTC
*
13097730 TTAGCCCGGATATAGCAACTCGCACAAATGCCTTTGGGTC
1 TTAGCCCGGATATAGCAACTCGCACAAATGCCTTCGGGTC
13097770 TTAGCCCGGATATAGCAACTCGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAGCAACTCGCACAAATGCCTTCGGGTC
13097810 TTAGCCCGG
1 TTAGCCCGG
13097819 TTATCATCCG
Statistics
Matches: 120, Mismatches: 8, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
39 3 0.03
40 117 0.98
ACGTcount: A:0.25, C:0.30, G:0.23, T:0.23
Consensus pattern (40 bp):
TTAGCCCGGATATAGCAACTCGCACAAATGCCTTCGGGTC
Found at i:13104698 original size:45 final size:45
Alignment explanation
Indices: 13104598--13104724 Score: 138
Period size: 45 Copynumber: 2.9 Consensus size: 45
13104588 TTTTCTCAAA
* *
13104598 TCACCGGCATT-TCGCCTGTTAGGCTCG-AGGCCCG-ATATCAGT
1 TCACCGGCATTATAGCCTGCTAGGCTCGAAGGCCCGAATATCAGT
*
13104640 TCACCGGCATTATAGCCTGCTAGGCTCGAAGGCTCGAATAGT-A-T
1 TCACCGGCATTATAGCCTGCTAGGCTCGAAGGCCCGAATA-TCAGT
** * *
13104684 CTCACCGGCATTATAGTTTGCTAAGCTCAAAGGCCCGAATA
1 -TCACCGGCATTATAGCCTGCTAGGCTCGAAGGCCCGAATA
13104725 ATCAAGTCAA
Statistics
Matches: 72, Mismatches: 8, Indels: 7
0.83 0.09 0.08
Matches are distributed among these distances:
42 11 0.15
43 14 0.19
44 7 0.10
45 39 0.54
46 1 0.01
ACGTcount: A:0.24, C:0.28, G:0.24, T:0.25
Consensus pattern (45 bp):
TCACCGGCATTATAGCCTGCTAGGCTCGAAGGCCCGAATATCAGT
Found at i:13105134 original size:38 final size:38
Alignment explanation
Indices: 13105083--13105214 Score: 174
Period size: 38 Copynumber: 3.4 Consensus size: 38
13105073 CAAATATAAT
* *
13105083 ATTTATCCCGGATATAATACCAGCACGAAGCCTGCGAG
1 ATTTAACCCGGATATAATACCAGCACGAAGCCTGCGGG
** *
13105121 ATTTAACCCGGATATTTTACCAGAACGAAGCCTGCGGG
1 ATTTAACCCGGATATAATACCAGCACGAAGCCTGCGGG
* *
13105159 TCTTTAAGCCCAGATATAATACCAGCACGAAGCCTGCGGG
1 -ATTTAA-CCCGGATATAATACCAGCACGAAGCCTGCGGG
*
13105199 ATTTAACCCTGATATA
1 ATTTAACCCGGATATA
13105215 CATCGAATAT
Statistics
Matches: 80, Mismatches: 12, Indels: 4
0.83 0.12 0.04
Matches are distributed among these distances:
38 42 0.52
39 10 0.12
40 28 0.35
ACGTcount: A:0.31, C:0.25, G:0.20, T:0.23
Consensus pattern (38 bp):
ATTTAACCCGGATATAATACCAGCACGAAGCCTGCGGG
Found at i:13119849 original size:27 final size:26
Alignment explanation
Indices: 13119805--13119856 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
13119795 CTCGCTGCAA
*
13119805 TCTGGTGGCCTCGCCACATATATCTGT
1 TCTGGTGACCTCGCCACA-ATATCTGT
* *
13119832 TCTGGTGACTTCGTCACAATATCTG
1 TCTGGTGACCTCGCCACAATATCTG
13119857 GCAGCCTCGC
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.17, C:0.27, G:0.21, T:0.35
Consensus pattern (26 bp):
TCTGGTGACCTCGCCACAATATCTGT
Found at i:13121276 original size:46 final size:46
Alignment explanation
Indices: 13121226--13121351 Score: 191
Period size: 46 Copynumber: 2.7 Consensus size: 46
13121216 TGGTTGAGCA
*
13121226 TCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACG
*
13121272 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACG
* * *
13121318 CCCGAGCTCATTGAGTTGAGT-TCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCT-GAGTTCACTTA
13121352 GGGGCGGGTT
Statistics
Matches: 73, Mismatches: 6, Indels: 2
0.90 0.07 0.02
Matches are distributed among these distances:
46 73 1.00
ACGTcount: A:0.21, C:0.21, G:0.27, T:0.31
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACG
Found at i:13123732 original size:8 final size:7
Alignment explanation
Indices: 13123703--13123735 Score: 57
Period size: 7 Copynumber: 4.6 Consensus size: 7
13123693 CATAGGTTGT
13123703 TTTTAAA
1 TTTTAAA
13123710 TTTTAAA
1 TTTTAAA
13123717 TTTTAAA
1 TTTTAAA
13123724 TTTTAAAA
1 TTTT-AAA
13123732 TTTT
1 TTTT
13123736 CTATCGTTTG
Statistics
Matches: 25, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
7 18 0.72
8 7 0.28
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (7 bp):
TTTTAAA
Found at i:13125058 original size:40 final size:40
Alignment explanation
Indices: 13124993--13125089 Score: 115
Period size: 40 Copynumber: 2.4 Consensus size: 40
13124983 AATTATGTTC
* * **
13124993 GGCACTAAGTGTGCGATTTGAAATAGATTCGGCTATAAGTA
1 GGCACTAAGTGTGTGAATTGAAATAGATTCCACTAT-AGTA
* * *
13125034 -GCACTAAGTGTGTGAATTGGAATAGCTTCCACTATATTA
1 GGCACTAAGTGTGTGAATTGAAATAGATTCCACTATAGTA
13125073 GGCACTAAGTGTGTGAA
1 GGCACTAAGTGTGTGAA
13125090 ACCAAGATAA
Statistics
Matches: 48, Mismatches: 7, Indels: 3
0.83 0.12 0.05
Matches are distributed among these distances:
39 3 0.06
40 45 0.94
ACGTcount: A:0.31, C:0.13, G:0.26, T:0.30
Consensus pattern (40 bp):
GGCACTAAGTGTGTGAATTGAAATAGATTCCACTATAGTA
Found at i:13125592 original size:57 final size:58
Alignment explanation
Indices: 13125504--13125632 Score: 163
Period size: 57 Copynumber: 2.3 Consensus size: 58
13125494 TCTCATTTCA
* * * *
13125504 CACACTTAGTGCC-CACTGACCGATCTCGCACATATAGTGCTCGGTTGAA-GAACTCG
1 CACACATAGTGCCTCAATGACCGATCTCGCACACATAGTGCTCGGTTAAAGGAACTCG
* * * *
13125560 CACACATAGTGCCTCAATTACCGATCTTGCACACATAGTGCTCGGTTAAAGGAATTTG
1 CACACATAGTGCCTCAATGACCGATCTCGCACACATAGTGCTCGGTTAAAGGAACTCG
*
13125618 CACACACAGTGCCTC
1 CACACATAGTGCCTC
13125633 TAATCATTCG
Statistics
Matches: 62, Mismatches: 9, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
56 12 0.19
57 31 0.50
58 19 0.31
ACGTcount: A:0.27, C:0.29, G:0.19, T:0.24
Consensus pattern (58 bp):
CACACATAGTGCCTCAATGACCGATCTCGCACACATAGTGCTCGGTTAAAGGAACTCG
Found at i:13125850 original size:43 final size:43
Alignment explanation
Indices: 13125789--13126048 Score: 486
Period size: 43 Copynumber: 6.1 Consensus size: 43
13125779 TGCTCGAATT
*
13125789 ACCGGCATGAAGCCTGCTAGGCACGAAGGCCCGAATACACATC
1 ACCGGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACACATC
13125832 ACCGGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACACATC
1 ACCGGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACACATC
13125875 ACCGGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACACATC
1 ACCGGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACACATC
* *
13125918 ACC-GTACGAAGCCTGCTAGGTACGAAGGCCCGAATACACATC
1 ACCGGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACACATC
13125960 ACCGGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACACATC
1 ACCGGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACACATC
13126003 ACCGGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACACATC
1 ACCGGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACACATC
13126046 ACC
1 ACC
13126049 AAGTTTTCAT
Statistics
Matches: 211, Mismatches: 5, Indels: 2
0.97 0.02 0.01
Matches are distributed among these distances:
42 40 0.19
43 171 0.81
ACGTcount: A:0.30, C:0.34, G:0.25, T:0.10
Consensus pattern (43 bp):
ACCGGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACACATC
Found at i:13126025 original size:128 final size:128
Alignment explanation
Indices: 13125797--13126048 Score: 495
Period size: 128 Copynumber: 2.0 Consensus size: 128
13125787 TTACCGGCAT
13125797 GAAGCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAAGCCTGCTAGGCACGAAGGC
1 GAAGCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAAGCCTGCTAGGCACGAAGGC
13125862 CCGAATACACATCACCGGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACACATCACCGTAC
66 CCGAATACACATCACCGGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACACATCACCGTAC
*
13125925 GAAGCCTGCTAGGTACGAAGGCCCGAATACACATCACCGGCACGAAGCCTGCTAGGCACGAAGGC
1 GAAGCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAAGCCTGCTAGGCACGAAGGC
13125990 CCGAATACACATCACCGGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACACATCACC
66 CCGAATACACATCACCGGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACACATCACC
13126049 AAGTTTTCAT
Statistics
Matches: 123, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
128 123 1.00
ACGTcount: A:0.31, C:0.34, G:0.25, T:0.10
Consensus pattern (128 bp):
GAAGCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAAGCCTGCTAGGCACGAAGGC
CCGAATACACATCACCGGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACACATCACCGTAC
Found at i:13127477 original size:47 final size:47
Alignment explanation
Indices: 13127402--13127534 Score: 162
Period size: 46 Copynumber: 2.9 Consensus size: 47
13127392 GTAACCTGCC
* * *
13127402 CATAAGCGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAG-TTA
1 CATAAACGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGCATA
** * * *
13127448 CATCTCACGAACTCGGACTCAACTCAACGAGTTCGGACG-CTCGCATC
1 CAT-AAACGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGCATA
*
13127495 CATAAATGAACTCGGACTCAACTCAACGAGTTCGGATGCC
1 CATAAACGAACTCGGACTCAACTCAACGAGTTCGGATGCC
13127535 CAAATATCCC
Statistics
Matches: 72, Mismatches: 12, Indels: 5
0.81 0.13 0.06
Matches are distributed among these distances:
46 37 0.51
47 35 0.49
ACGTcount: A:0.29, C:0.31, G:0.20, T:0.20
Consensus pattern (47 bp):
CATAAACGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGCATA
Found at i:13131492 original size:13 final size:14
Alignment explanation
Indices: 13131467--13131507 Score: 50
Period size: 13 Copynumber: 3.0 Consensus size: 14
13131457 AAATAAGATA
13131467 AATAAATATAAAAGT
1 AATAAATA-AAAAGT
*
13131482 GA-AAATAAAAA-T
1 AATAAATAAAAAGT
13131494 AATAAATAAAAAGT
1 AATAAATAAAAAGT
13131508 TTTTAAACAT
Statistics
Matches: 22, Mismatches: 2, Indels: 5
0.76 0.07 0.17
Matches are distributed among these distances:
12 2 0.09
13 13 0.59
14 6 0.27
15 1 0.05
ACGTcount: A:0.71, C:0.00, G:0.07, T:0.22
Consensus pattern (14 bp):
AATAAATAAAAAGT
Found at i:13133058 original size:30 final size:30
Alignment explanation
Indices: 13133024--13133084 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
13133014 TTCCCGAGCC
*
13133024 TAGGGGTAAAAGTGTAAATATGCAAAAGTT
1 TAGGGGCAAAAGTGTAAATATGCAAAAGTT
* * * *
13133054 TAGGGGCAAAATTGTAATTTTTCAAAAGTT
1 TAGGGGCAAAAGTGTAAATATGCAAAAGTT
13133084 T
1 T
13133085 GAGTTAAGGA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.39, C:0.05, G:0.23, T:0.33
Consensus pattern (30 bp):
TAGGGGCAAAAGTGTAAATATGCAAAAGTT
Found at i:13133409 original size:18 final size:19
Alignment explanation
Indices: 13133376--13133411 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
13133366 AAATGTAGTG
*
13133376 AATTAATTGAATTATGGTA
1 AATTAAATGAATTATGGTA
13133395 AATTAAATG-ATTATGGT
1 AATTAAATGAATTATGGT
13133412 GCCAAGTTTA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 8 0.50
19 8 0.50
ACGTcount: A:0.42, C:0.00, G:0.17, T:0.42
Consensus pattern (19 bp):
AATTAAATGAATTATGGTA
Found at i:13133854 original size:68 final size:64
Alignment explanation
Indices: 13133744--13133894 Score: 169
Period size: 68 Copynumber: 2.3 Consensus size: 64
13133734 ATACAGATAG
* * * * *
13133744 TATGTAGCTAGGTCACATGTATGGTGCTAAGTGTACATCATGT-GTACAAGAGAGCTACAAGACA
1 TATGTAGCTAGGTCGCATGGATGATACTAAGTGTACACCATGTAG-ACAAGAGAGCTAC--GACA
13133808 TTA
63 -TA
* * **
13133811 TGATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATA
1 T-ATGTAGCTAGGTCGCATGGATGATACTAAGTGTACACCATGTAGACAAGAGAGCTACGACATA
13133876 TATGTAGCTAGGTCGCATG
1 TATGTAGCTAGGTCGCATG
13133895 TGTAGTACTA
Statistics
Matches: 73, Mismatches: 9, Indels: 7
0.82 0.10 0.08
Matches are distributed among these distances:
64 18 0.25
65 3 0.04
66 2 0.03
67 1 0.01
68 48 0.66
69 1 0.01
ACGTcount: A:0.30, C:0.15, G:0.28, T:0.27
Consensus pattern (64 bp):
TATGTAGCTAGGTCGCATGGATGATACTAAGTGTACACCATGTAGACAAGAGAGCTACGACATA
Found at i:13133946 original size:49 final size:48
Alignment explanation
Indices: 13133893--13134081 Score: 202
Period size: 51 Copynumber: 3.8 Consensus size: 48
13133883 CTAGGTCGCA
* *
13133893 TGTGTAGTACTAAGTGCAGGCCACTATGTGTACCCGATATCTTCGATCATG
1 TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAT-TTCG-TCA-G
* **
13133944 TGTGTAGTACTAAGTGCAGGCTACTATGTGTATCAGATAGTTAGGTCACG
1 TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATA-TTTCGTCA-G
* * **
13133994 TGTGTAGTACTAAGTGTAGGCTACTACGTGTACTGGATAATTGGTCG-CA-
1 TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGAT-ATT--TCGTCAG
*
13134043 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATA
1 TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATA
13134082 GTTGGCTACA
Statistics
Matches: 116, Mismatches: 18, Indels: 11
0.80 0.12 0.08
Matches are distributed among these distances:
48 1 0.01
49 33 0.28
50 39 0.34
51 41 0.35
52 2 0.02
ACGTcount: A:0.25, C:0.17, G:0.26, T:0.31
Consensus pattern (48 bp):
TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATATTTCGTCAG
Found at i:13134025 original size:101 final size:99
Alignment explanation
Indices: 13133884--13134084 Score: 258
Period size: 99 Copynumber: 2.0 Consensus size: 99
13133874 TATATGTAGC
* * * **
13133884 TAGGTCGCATGTGTAGTACTAAGTGCAGGCCACTATGTGTACCCGATATCTTCGATCATGTGTGT
1 TAGGTCACATGTGTAGTACTAAGTGCAGGCCACTACGTGTACCCGATA-ATT-GATCACATGTGT
* *
13133949 AGTACTAAGTGCAGGCTACTATGTGTATCAGATAGT
64 AGTACTAAGTGCAGGCTACTATGCGTACCAGATAGT
* * * ** * *
13133985 TAGGTCACGTGTGTAGTACTAAGTGTAGGCTACTACGTGTACTGGATAATTGGTCGCATGTGTAG
1 TAGGTCACATGTGTAGTACTAAGTGCAGGCCACTACGTGTACCCGATAATTGATCACATGTGTAG
13134050 TACTAAGTGCAGGCTACTATGCGTACCAGATAGT
66 TACTAAGTGCAGGCTACTATGCGTACCAGATAGT
13134084 T
1 T
13134085 GGCTACATAT
Statistics
Matches: 86, Mismatches: 14, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
99 43 0.50
100 2 0.02
101 41 0.48
ACGTcount: A:0.25, C:0.17, G:0.27, T:0.31
Consensus pattern (99 bp):
TAGGTCACATGTGTAGTACTAAGTGCAGGCCACTACGTGTACCCGATAATTGATCACATGTGTAG
TACTAAGTGCAGGCTACTATGCGTACCAGATAGT
Found at i:13147351 original size:14 final size:14
Alignment explanation
Indices: 13147332--13147358 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
13147322 AGCACTAACA
13147332 TATTTTAATTTCTT
1 TATTTTAATTTCTT
13147346 TATTTTAATTTCT
1 TATTTTAATTTCT
13147359 AACACTTTAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.22, C:0.07, G:0.00, T:0.70
Consensus pattern (14 bp):
TATTTTAATTTCTT
Found at i:13147814 original size:17 final size:17
Alignment explanation
Indices: 13147794--13147826 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
13147784 CTTTTATTAA
13147794 GTTTTTAAGATTCATTC
1 GTTTTTAAGATTCATTC
*
13147811 GTTTTTAGGATTCATT
1 GTTTTTAAGATTCATT
13147827 TGTTAACTTG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.21, C:0.09, G:0.15, T:0.55
Consensus pattern (17 bp):
GTTTTTAAGATTCATTC
Found at i:13170308 original size:43 final size:43
Alignment explanation
Indices: 13170257--13170404 Score: 149
Period size: 43 Copynumber: 3.4 Consensus size: 43
13170247 AGATGTGACA
13170257 TGTAAGACCATGTCTGGGACATTGGCATTGTATTGTGATTACG
1 TGTAAGACCATGTCTGGGACATTGGCATTGTATTGTGATTACG
* * * * * *
13170300 TGTTAGACCATGTCTAGGATATTGACATCAT-TA-TATGATTTCG
1 TGTAAGACCATGTCTGGGACATTGGCAT--TGTATTGTGATTACG
* * * *
13170343 TGTAAGACCTTGTCTGGGACAGTGGCATTG-ATATGTGATAACA
1 TGTAAGACCATGTCTGGGACATTGGCATTGTAT-TGTGATTACG
*
13170386 TGTAAGACCATATCTGGGA
1 TGTAAGACCATGTCTGGGA
13170405 TATGGCGTTA
Statistics
Matches: 82, Mismatches: 18, Indels: 10
0.75 0.16 0.09
Matches are distributed among these distances:
41 2 0.02
43 77 0.94
44 2 0.02
45 1 0.01
ACGTcount: A:0.27, C:0.14, G:0.25, T:0.34
Consensus pattern (43 bp):
TGTAAGACCATGTCTGGGACATTGGCATTGTATTGTGATTACG
Found at i:13203219 original size:50 final size:50
Alignment explanation
Indices: 13203109--13203288 Score: 254
Period size: 50 Copynumber: 3.6 Consensus size: 50
13203099 CTGGTATGCA
* * * ** * * *
13203109 TAGTAGCCTGCACATAGTACTACACATGCGACC-AATTATTTGGTACACA
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATCTGATACACG
13203158 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATCTGATACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATCTGATACACG
**
13203208 TAGTAGCCTGCACTTAGTACTACACACGTGATGTAACCATCTGATACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATCTGATACACG
*
13203258 TAGTAGCCTGCACTTAGCACTACACACGTGA
1 TAGTAGCCTGCACTTAGTACTACACACGTGA
13203289 TCACAGTTTT
Statistics
Matches: 119, Mismatches: 11, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
49 30 0.25
50 89 0.75
ACGTcount: A:0.31, C:0.27, G:0.17, T:0.25
Consensus pattern (50 bp):
TAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATCTGATACACG
Found at i:13203289 original size:50 final size:50
Alignment explanation
Indices: 13203109--13203334 Score: 249
Period size: 50 Copynumber: 4.5 Consensus size: 50
13203099 CTGGTATGCA
* * * * ** * * *
13203109 TAGTAGCCTGCACATAGTACTACACATGCGA-CCAATTATTTGGTACACA
1 TAGTAGCCTGCACTTAGTACTACACACGTGATCTAACCATCTGATACACG
*
13203158 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATCTGATACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGATCTAACCATCTGATACACG
*
13203208 TAGTAGCCTGCACTTAGTACTACACACGTGATGTAACCATCTGATACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGATCTAACCATCTGATACACG
* *** * * * *
13203258 TAGTAGCCTGCACTTAGCACTACACACGTGATC-ACAGTTTTCGGGTACGCA
1 TAGTAGCCTGCACTTAGTACTACACACGTGATCTA-A-CCATCTGATACACG
13203309 TAGTAGCCTGCACTTAGTACTACACA
1 TAGTAGCCTGCACTTAGTACTACACA
13203335 TGCGACCTCA
Statistics
Matches: 153, Mismatches: 21, Indels: 4
0.86 0.12 0.02
Matches are distributed among these distances:
49 29 0.19
50 92 0.60
51 32 0.21
ACGTcount: A:0.30, C:0.27, G:0.18, T:0.26
Consensus pattern (50 bp):
TAGTAGCCTGCACTTAGTACTACACACGTGATCTAACCATCTGATACACG
Found at i:13206915 original size:29 final size:29
Alignment explanation
Indices: 13206850--13206964 Score: 128
Period size: 29 Copynumber: 4.0 Consensus size: 29
13206840 TACCTGTATC
* * * *
13206850 TGGCCCATTAAGCCC-AGTCATATTCATA
1 TGGCCCATTAGGCCCAAATCACATTTATA
*
13206878 TGACCCATTAGGCCCAAATCAC-TTGTATA
1 TGGCCCATTAGGCCCAAATCACATT-TATA
13206907 TGGCCCATTAGGCCCAAATCACATTTATA
1 TGGCCCATTAGGCCCAAATCACATTTATA
* * *
13206936 TGGCCCGTTAGGCCC-AGTCACATTCATA
1 TGGCCCATTAGGCCCAAATCACATTTATA
13206964 T
1 T
13206965 TCATGCTCAC
Statistics
Matches: 75, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
28 27 0.36
29 46 0.61
30 2 0.03
ACGTcount: A:0.28, C:0.29, G:0.16, T:0.28
Consensus pattern (29 bp):
TGGCCCATTAGGCCCAAATCACATTTATA
Found at i:13209180 original size:33 final size:33
Alignment explanation
Indices: 13209138--13209205 Score: 118
Period size: 33 Copynumber: 2.1 Consensus size: 33
13209128 GAAAACTCGC
13209138 TCCCTTTATGGAGTTATAAATACCCTAAGGCTA
1 TCCCTTTATGGAGTTATAAATACCCTAAGGCTA
* *
13209171 TCCCTTTATGGAGTTATCAATACCCTGAGGCTA
1 TCCCTTTATGGAGTTATAAATACCCTAAGGCTA
13209204 TC
1 TC
13209206 TCTAATTCCA
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
33 33 1.00
ACGTcount: A:0.26, C:0.24, G:0.16, T:0.34
Consensus pattern (33 bp):
TCCCTTTATGGAGTTATAAATACCCTAAGGCTA
Found at i:13211428 original size:28 final size:29
Alignment explanation
Indices: 13211396--13211457 Score: 90
Period size: 29 Copynumber: 2.2 Consensus size: 29
13211386 TACCTGTATC
*
13211396 TGGCCCATTAAGCCC-AATCATATTCATA
1 TGGCCCATTAAGCCCAAATCACATTCATA
* *
13211424 TGGCCCATTAGGCCCAAATCACATTTATA
1 TGGCCCATTAAGCCCAAATCACATTCATA
13211453 TGGCC
1 TGGCC
13211458 TGTTAGACCC
Statistics
Matches: 30, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
28 14 0.47
29 16 0.53
ACGTcount: A:0.29, C:0.29, G:0.15, T:0.27
Consensus pattern (29 bp):
TGGCCCATTAAGCCCAAATCACATTCATA
Found at i:13211453 original size:29 final size:28
Alignment explanation
Indices: 13211396--13211481 Score: 93
Period size: 28 Copynumber: 3.0 Consensus size: 28
13211386 TACCTGTATC
*
13211396 TGGCCCATTAAGCCCAATCATATTCATA
1 TGGCCCATTAAGCCCAATCACATTCATA
* *
13211424 TGGCCCATTAGGCCCAAATCACATTTATA
1 TGGCCCATTAAGCCC-AATCACATTCATA
** *
13211453 TGGCCTGTT-AGACCCAGTCACATTCATA
1 TGGCCCATTAAG-CCCAATCACATTCATA
13211481 T
1 T
13211482 TCATACTCAC
Statistics
Matches: 48, Mismatches: 8, Indels: 4
0.80 0.13 0.07
Matches are distributed among these distances:
28 27 0.56
29 21 0.44
ACGTcount: A:0.29, C:0.28, G:0.14, T:0.29
Consensus pattern (28 bp):
TGGCCCATTAAGCCCAATCACATTCATA
Found at i:13216648 original size:43 final size:44
Alignment explanation
Indices: 13216600--13216755 Score: 140
Period size: 43 Copynumber: 3.6 Consensus size: 44
13216590 ATTACCGAGA
* *
13216600 TGTGATTACATGTAGGACTATGTCTGGAACATTGGCATT-TTAT
1 TGTGATTACATGTAAGACCATGTCTGGAACATTGGCATTATTAT
* *
13216643 TGTGATTACGTGTAAGACCATGTCTGGGACATTGGCATTATTA-
1 TGTGATTACATGTAAGACCATGTCTGGAACATTGGCATTATTAT
* * * * * * * * *
13216686 TATGATTTCGTGTAAAACCTTGTCTGGGATAGTGGCATCGA-TA-
1 TGTGATTACATGTAAGACCATGTCTGGAACATTGGCAT-TATTAT
* *
13216729 TGTGATAACATGTAAGACCATATCTGG
1 TGTGATTACATGTAAGACCATGTCTGG
13216756 CATATGGTGT
Statistics
Matches: 93, Mismatches: 18, Indels: 4
0.81 0.16 0.03
Matches are distributed among these distances:
43 89 0.96
44 4 0.04
ACGTcount: A:0.27, C:0.13, G:0.24, T:0.35
Consensus pattern (44 bp):
TGTGATTACATGTAAGACCATGTCTGGAACATTGGCATTATTAT
Found at i:13224566 original size:45 final size:45
Alignment explanation
Indices: 13224465--13224591 Score: 129
Period size: 45 Copynumber: 2.9 Consensus size: 45
13224455 TTTTCTCAAA
* *
13224465 TCACCGGCATT-TCGCCTGTTAGGCTCG-AGGCCCG-ATATCAGT
1 TCACCGGCATTATAGCCTGCTAGGCTCGAAGGCCCGAATATCAGT
* *
13224507 TCACCGGTATTATAGCCTGCTAGGCTCGAAGGCTCGAATAGT-A-T
1 TCACCGGCATTATAGCCTGCTAGGCTCGAAGGCCCGAATA-TCAGT
** * *
13224551 CTCACCGGCATTATAGTTTGCTAAGCTCAAAGGCCCGAATA
1 -TCACCGGCATTATAGCCTGCTAGGCTCGAAGGCCCGAATA
13224592 ATCAAGTCAA
Statistics
Matches: 70, Mismatches: 10, Indels: 7
0.80 0.11 0.08
Matches are distributed among these distances:
42 10 0.14
43 14 0.20
44 7 0.10
45 38 0.54
46 1 0.01
ACGTcount: A:0.24, C:0.27, G:0.24, T:0.26
Consensus pattern (45 bp):
TCACCGGCATTATAGCCTGCTAGGCTCGAAGGCCCGAATATCAGT
Found at i:13225045 original size:38 final size:38
Alignment explanation
Indices: 13224994--13225163 Score: 241
Period size: 38 Copynumber: 4.4 Consensus size: 38
13224984 CGAATATAAT
* * *
13224994 ATTTATCCCGGATATAATACCAGCACGAAGCCTACGGG
1 ATTTAACCCGGATATAATACCAGTACGAAGCCTGCGGG
** *
13225032 ATTTAACCCGGATATTTTACCAGAACGAAGCCTGCGGG
1 ATTTAACCCGGATATAATACCAGTACGAAGCCTGCGGG
* *
13225070 TCTTTAAGCCCAGATATAATACCAGTACGAAGCCTGCGGG
1 -ATTTAA-CCCGGATATAATACCAGTACGAAGCCTGCGGG
13225110 ATTTAACCCGGATATAATACCAGTACGAAGCCTGCGGG
1 ATTTAACCCGGATATAATACCAGTACGAAGCCTGCGGG
*
13225148 ATTTAACCCTGATATA
1 ATTTAACCCGGATATA
13225164 CATCGAATAT
Statistics
Matches: 117, Mismatches: 13, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
38 79 0.68
39 10 0.09
40 28 0.24
ACGTcount: A:0.31, C:0.24, G:0.21, T:0.24
Consensus pattern (38 bp):
ATTTAACCCGGATATAATACCAGTACGAAGCCTGCGGG
Found at i:13225138 original size:78 final size:76
Alignment explanation
Indices: 13224994--13225163 Score: 241
Period size: 78 Copynumber: 2.2 Consensus size: 76
13224984 CGAATATAAT
* * **
13224994 ATTTATCCCGGATATAATACCAGCACGAAGCCTACGGGATTTAACCCGGATATTTTACCAGAACG
1 ATTTAACCCAGATATAATACCAGCACGAAGCCTACGGGATTTAACCCGGATATAATACCAGAACG
13225059 AAGCCTGCGGG
66 AAGCCTGCGGG
* * * *
13225070 TCTTTAAGCCCAGATATAATACCAGTACGAAGCCTGCGGGATTTAACCCGGATATAATACCAGTA
1 -ATTTAA-CCCAGATATAATACCAGCACGAAGCCTACGGGATTTAACCCGGATATAATACCAGAA
13225135 CGAAGCCTGCGGG
64 CGAAGCCTGCGGG
*
13225148 ATTTAACCCTGATATA
1 ATTTAACCCAGATATA
13225164 CATCGAATAT
Statistics
Matches: 82, Mismatches: 10, Indels: 3
0.86 0.11 0.03
Matches are distributed among these distances:
76 9 0.11
77 9 0.11
78 64 0.78
ACGTcount: A:0.31, C:0.24, G:0.21, T:0.24
Consensus pattern (76 bp):
ATTTAACCCAGATATAATACCAGCACGAAGCCTACGGGATTTAACCCGGATATAATACCAGAACG
AAGCCTGCGGG
Found at i:13252012 original size:24 final size:24
Alignment explanation
Indices: 13251978--13252048 Score: 83
Period size: 23 Copynumber: 3.0 Consensus size: 24
13251968 GAGCTTACTA
*
13251978 TTTCAGTTCATAAGAGCTTATTGT
1 TTTCAGCTCATAAGAGCTTATTGT
* **
13252002 TTTCAGCTCATCAGAGCTTACCG-
1 TTTCAGCTCATAAGAGCTTATTGT
13252025 TTTCAGCTCA-ATAGAGCTTATTGT
1 TTTCAGCTCATA-AGAGCTTATTGT
13252049 CCATCAGCTT
Statistics
Matches: 38, Mismatches: 7, Indels: 4
0.78 0.14 0.08
Matches are distributed among these distances:
23 19 0.50
24 19 0.50
ACGTcount: A:0.24, C:0.20, G:0.17, T:0.39
Consensus pattern (24 bp):
TTTCAGCTCATAAGAGCTTATTGT
Found at i:13252032 original size:23 final size:22
Alignment explanation
Indices: 13251968--13252044 Score: 82
Period size: 23 Copynumber: 3.3 Consensus size: 22
13251958 CTGCACGTTG
* *
13251968 GAGCTTACTATTTCAGTTCATAA
1 GAGCTTACTGTTTCAGCTCAT-A
*
13251991 GAGCTTATTGTTTTCAGCTCATCA
1 GAGCTTACTG-TTTCAGCTCAT-A
*
13252015 GAGCTTACCGTTTCAGCTCAATA
1 GAGCTTACTGTTTCAGCTC-ATA
13252038 GAGCTTA
1 GAGCTTA
13252045 TTGTCCATCA
Statistics
Matches: 46, Mismatches: 6, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
23 25 0.54
24 21 0.46
ACGTcount: A:0.26, C:0.21, G:0.17, T:0.36
Consensus pattern (22 bp):
GAGCTTACTGTTTCAGCTCATA
Found at i:13252209 original size:20 final size:20
Alignment explanation
Indices: 13252184--13252224 Score: 73
Period size: 20 Copynumber: 2.0 Consensus size: 20
13252174 CAACGGGCAT
*
13252184 AAATACTGTTTATATGGATG
1 AAATACTGCTTATATGGATG
13252204 AAATACTGCTTATATGGATG
1 AAATACTGCTTATATGGATG
13252224 A
1 A
13252225 GCTATTGTTT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.37, C:0.07, G:0.20, T:0.37
Consensus pattern (20 bp):
AAATACTGCTTATATGGATG
Found at i:13256011 original size:46 final size:46
Alignment explanation
Indices: 13255884--13256011 Score: 213
Period size: 45 Copynumber: 2.8 Consensus size: 46
13255874 ATGTAACCCC
* * * *
13255884 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
13255930 CCATAAGTGAACTC-GACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
13255975 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
13256012 TGCTCAACCA
Statistics
Matches: 77, Mismatches: 4, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
45 42 0.55
46 35 0.45
ACGTcount: A:0.30, C:0.30, G:0.21, T:0.20
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:13256030 original size:46 final size:45
Alignment explanation
Indices: 13255892--13256030 Score: 131
Period size: 45 Copynumber: 3.0 Consensus size: 45
13255882 CCCCATAAGC
* ** * *
13255892 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTC-GCATCCATAAGT
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCTCACCATCC-T-AGT
*** *
13255938 GAACTC-GACTCAACTCAACGAGTTCGGACATTC-GCATCCATAAGT
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCTCACCATCC-T-AGT
13255983 GAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCCTAGT
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCTC-ACCATCCTAGT
13256029 GA
1 GA
13256031 CATGTCACTT
Statistics
Matches: 83, Mismatches: 7, Indels: 6
0.86 0.07 0.06
Matches are distributed among these distances:
45 42 0.51
46 35 0.42
47 1 0.01
48 5 0.06
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (45 bp):
GAACTCGGACTCAACTCAACGAGTTCGGATGCTCACCATCCTAGT
Found at i:13263444 original size:46 final size:46
Alignment explanation
Indices: 13263377--13263549 Score: 201
Period size: 46 Copynumber: 3.7 Consensus size: 46
13263367 TGTAACCCAC
*
13263377 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCAT
* * *
13263423 CCATAAGTGAACTCGAACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGG--G-C--GTTCGCAT
* * *
13263473 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCAT
*
13263516 CCATAAGTGAACTCGGACTCAACTCAACGAGTTC
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTC
13263550 AGATGCTCAA
Statistics
Matches: 106, Mismatches: 12, Indels: 18
0.78 0.09 0.13
Matches are distributed among these distances:
42 2 0.02
43 3 0.03
44 2 0.02
45 2 0.02
46 59 0.56
47 27 0.25
48 3 0.03
49 2 0.02
50 3 0.03
51 3 0.03
ACGTcount: A:0.29, C:0.30, G:0.20, T:0.21
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCAT
Found at i:13263496 original size:93 final size:93
Alignment explanation
Indices: 13263384--13263555 Score: 299
Period size: 93 Copynumber: 1.8 Consensus size: 93
13263374 CACCCATAAG
* *
13263384 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGAACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGAACTCAACTCA
*
13263449 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCAGATGCCTAGTTACATCTCA
* *
13263477 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGAACTCAACTCA
13263542 ACGAGTTCAGATGC
66 ACGAGTTCAGATGC
13263556 TCAACCATCC
Statistics
Matches: 74, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.29, C:0.30, G:0.20, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGAACTCAACTCA
ACGAGTTCAGATGCCTAGTTACATCTCA
Found at i:13263571 original size:46 final size:46
Alignment explanation
Indices: 13263426--13263564 Score: 117
Period size: 47 Copynumber: 3.0 Consensus size: 46
13263416 TTCGCATCCA
* *
13263426 TAAGTGAACTCGAACTCAACTCAACGAGTTCGGATGC-CTAGTTA-CATC
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCAGATGCTC-A---ACCATC
* * * * * *
13263474 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA--
1 TAAGTGAACTCGGACTCAACTCAACGAGTTC--AGATGCTCAACCATC
13263519 TAAGTGAACTCGGACTCAACTCAACGAGTTCAGATGCTCAACCATC
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCAGATGCTCAACCATC
13263565 CTAGTGACAT
Statistics
Matches: 71, Mismatches: 13, Indels: 16
0.71 0.13 0.16
Matches are distributed among these distances:
44 9 0.13
45 2 0.03
46 26 0.37
47 27 0.38
48 2 0.03
49 4 0.06
50 1 0.01
ACGTcount: A:0.31, C:0.29, G:0.18, T:0.22
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCAGATGCTCAACCATC
Found at i:13274667 original size:44 final size:45
Alignment explanation
Indices: 13274502--13274719 Score: 266
Period size: 44 Copynumber: 4.8 Consensus size: 45
13274492 TGTAACCCGC
* * *
13274502 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATT-GCAT
* *
13274548 CCATGAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTGCAT
* *
13274598 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTGCAT
*
13274640 CCATAACT-AACTCGGACTCAACTCAACGAGTTCGGACA-TGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTGCAT
*
13274683 CCAGAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
13274720 TGCCCAAATA
Statistics
Matches: 151, Mismatches: 12, Indels: 20
0.83 0.07 0.11
Matches are distributed among these distances:
42 5 0.03
43 13 0.09
44 61 0.40
46 34 0.23
47 29 0.19
48 2 0.01
49 2 0.01
50 3 0.02
51 2 0.01
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (45 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTGCAT
Done.