Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A06
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 115140250
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2234201 characters in sequence are not A, C, G, or T
File 45 of 345
Found at i:13277143 original size:30 final size:30
Alignment explanation
Indices: 13277099--13277187 Score: 101
Period size: 30 Copynumber: 3.0 Consensus size: 30
13277089 CAAAGATAAC
13277099 AAGAAAACC-GAATAAAGAAATCCAAGATA
1 AAGAAAACCAGAATAAAGAAATCCAAGATA
* *
13277128 GAGAAACCCAGAATAAAGAAATCC-AGAATA
1 AAGAAAACCAGAATAAAGAAATCCAAG-ATA
* * * *
13277158 AAGAGATCCAGGATAAAGAAACCCAAGATA
1 AAGAAAACCAGAATAAAGAAATCCAAGATA
13277188 CGATACTATG
Statistics
Matches: 50, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
29 9 0.18
30 39 0.78
31 2 0.04
ACGTcount: A:0.57, C:0.16, G:0.17, T:0.10
Consensus pattern (30 bp):
AAGAAAACCAGAATAAAGAAATCCAAGATA
Found at i:13277147 original size:15 final size:15
Alignment explanation
Indices: 13277099--13277178 Score: 92
Period size: 15 Copynumber: 5.4 Consensus size: 15
13277089 CAAAGATAAC
*
13277099 AAGAAAACC-GAATA
1 AAGAAATCCAGAATA
13277113 AAGAAATCCA-AGATA
1 AAGAAATCCAGA-ATA
* *
13277128 GAGAAACCCAGAATA
1 AAGAAATCCAGAATA
13277143 AAGAAATCCAGAATA
1 AAGAAATCCAGAATA
* *
13277158 AAGAGATCCAGGATA
1 AAGAAATCCAGAATA
13277173 AAGAAA
1 AAGAAA
13277179 CCCAAGATAC
Statistics
Matches: 55, Mismatches: 8, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
14 9 0.16
15 45 0.82
16 1 0.02
ACGTcount: A:0.59, C:0.14, G:0.17, T:0.10
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:13277187 original size:15 final size:15
Alignment explanation
Indices: 13277110--13277187 Score: 79
Period size: 15 Copynumber: 5.2 Consensus size: 15
13277100 AGAAAACCGA
13277110 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
* *
13277125 ATAGAGAAA-CCCAG
1 ATAAAGAAATCCAAG
13277139 AATAAAGAAATCC-AG
1 -ATAAAGAAATCCAAG
* *
13277154 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
13277170 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
13277185 ATA
1 ATA
13277188 CGATACTATG
Statistics
Matches: 52, Mismatches: 8, Indels: 6
0.79 0.12 0.09
Matches are distributed among these distances:
14 4 0.08
15 45 0.87
16 3 0.06
ACGTcount: A:0.56, C:0.15, G:0.17, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:13280193 original size:45 final size:46
Alignment explanation
Indices: 13280087--13280214 Score: 213
Period size: 45 Copynumber: 2.8 Consensus size: 46
13280077 TGTAACCCGC
* * *
13280087 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
13280133 CCATGAGTGAACTCGGACTCAACTCAACGAGTTCGGACATT-GCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
13280178 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
13280215 TGCCCAAATA
Statistics
Matches: 77, Mismatches: 5, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
45 40 0.52
46 37 0.48
ACGTcount: A:0.29, C:0.28, G:0.23, T:0.20
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:13292757 original size:51 final size:51
Alignment explanation
Indices: 13292692--13292901 Score: 142
Period size: 51 Copynumber: 4.1 Consensus size: 51
13292682 AGCTTCATCT
* * *
13292692 CATCCATAGATATGATATGAGGCAT-AAAG-CTATGTGAATGTGGCTCCATGG
1 CATCCATAGATATGAAAAGAGG--TGAAAGACCATGTGAATGTGGCTCCATGG
* *
13292743 CATCCATA-AGTATGAAAAGAGGTGCAAGACCATGTGAGTGTGGCTCCATGG
1 CATCCATAGA-TATGAAAAGAGGTGAAAGACCATGTGAATGTGGCTCCATGG
* * * * * *** * * *
13292794 CATGCACAGATTTGATATA-AGTTGTAAA-AATGTGTGAGTGAGACTCCATGG
1 CATCCATAGATATGA-AAAGAGGTG-AAAGACCATGTGAATGTGGCTCCATGG
* * * * * *
13292845 CATCCATAGATATGATATGAGGTGTAAGACCATGTGAGTGAGGCTTCATGG
1 CATCCATAGATATGAAAAGAGGTGAAAGACCATGTGAATGTGGCTCCATGG
13292896 CATCCA
1 CATCCA
13292902 CAGTGTTAGT
Statistics
Matches: 122, Mismatches: 29, Indels: 16
0.73 0.17 0.10
Matches are distributed among these distances:
49 1 0.01
50 6 0.05
51 110 0.90
52 5 0.04
ACGTcount: A:0.31, C:0.16, G:0.27, T:0.26
Consensus pattern (51 bp):
CATCCATAGATATGAAAAGAGGTGAAAGACCATGTGAATGTGGCTCCATGG
Found at i:13296020 original size:6 final size:6
Alignment explanation
Indices: 13296002--13296095 Score: 86
Period size: 6 Copynumber: 15.3 Consensus size: 6
13295992 AAGAAACAAT
* *
13296002 ATCAGA A-CTAGA ATCAGA ATCAGA ATCAGA ATCAAA ATCAG- GTGACAGA
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA AT--CAGA
* *
13296051 ATCAGA ATCAGA ATCAGT ATCAGGTA A-CAGA ATCAAA ATCAGA AT
1 ATCAGA ATCAGA ATCAGA ATCA-G-A ATCAGA ATCAGA ATCAGA AT
13296096 GTGAATACAA
Statistics
Matches: 72, Mismatches: 8, Indels: 16
0.75 0.08 0.17
Matches are distributed among these distances:
5 4 0.06
6 59 0.82
7 7 0.10
8 2 0.03
ACGTcount: A:0.49, C:0.16, G:0.17, T:0.18
Consensus pattern (6 bp):
ATCAGA
Found at i:13296054 original size:31 final size:31
Alignment explanation
Indices: 13296016--13296095 Score: 124
Period size: 31 Copynumber: 2.6 Consensus size: 31
13296006 GAACTAGAAT
*
13296016 CAGAATCAGAATCAGAATCAAAATCAGGTGA
1 CAGAATCAGAATCAGAATCAAAATCAGGTAA
**
13296047 CAGAATCAGAATCAGAATCAGTATCAGGTAA
1 CAGAATCAGAATCAGAATCAAAATCAGGTAA
*
13296078 CAGAATCAAAATCAGAAT
1 CAGAATCAGAATCAGAAT
13296096 GTGAATACAA
Statistics
Matches: 45, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
31 45 1.00
ACGTcount: A:0.49, C:0.16, G:0.17, T:0.17
Consensus pattern (31 bp):
CAGAATCAGAATCAGAATCAAAATCAGGTAA
Found at i:13296056 original size:25 final size:25
Alignment explanation
Indices: 13296020--13296092 Score: 89
Period size: 25 Copynumber: 2.9 Consensus size: 25
13296010 TAGAATCAGA
13296020 ATCAGAATCAGAATCAAAATCAGGT
1 ATCAGAATCAGAATCAAAATCAGGT
*
13296045 GA-CAGAATCAGAATCAGAATCA-GT
1 -ATCAGAATCAGAATCAAAATCAGGT
13296069 ATCAGGTAA-CAGAATCAAAATCAG
1 ATCA-G-AATCAGAATCAAAATCAG
13296093 AATGTGAATA
Statistics
Matches: 41, Mismatches: 2, Indels: 8
0.80 0.04 0.16
Matches are distributed among these distances:
23 1 0.02
24 4 0.10
25 33 0.80
26 3 0.07
ACGTcount: A:0.48, C:0.16, G:0.18, T:0.18
Consensus pattern (25 bp):
ATCAGAATCAGAATCAAAATCAGGT
Found at i:13296355 original size:27 final size:26
Alignment explanation
Indices: 13296315--13296366 Score: 77
Period size: 27 Copynumber: 2.0 Consensus size: 26
13296305 GCGAGGCTGC
*
13296315 CAGATATTGTGACGAAGTCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
*
13296341 CAGATATATGTGACGAGGCCACCAGA
1 CAGATAT-TGTGACGAAGCCACCAGA
13296367 TTGTAGCGAG
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
26 7 0.30
27 16 0.70
ACGTcount: A:0.37, C:0.21, G:0.25, T:0.17
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:13296636 original size:27 final size:27
Alignment explanation
Indices: 13296606--13296664 Score: 91
Period size: 27 Copynumber: 2.2 Consensus size: 27
13296596 ACCCTAGGGG
* *
13296606 TAAAATGGTAATTTTGTAAATCGAGGA
1 TAAAATGGTAATTCTATAAATCGAGGA
*
13296633 TAAAATGGTAATTCTATAAATCGAGGG
1 TAAAATGGTAATTCTATAAATCGAGGA
13296660 TAAAA
1 TAAAA
13296665 CAGTATTTTT
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 29 1.00
ACGTcount: A:0.44, C:0.05, G:0.20, T:0.31
Consensus pattern (27 bp):
TAAAATGGTAATTCTATAAATCGAGGA
Found at i:13296723 original size:54 final size:54
Alignment explanation
Indices: 13296682--13296834 Score: 193
Period size: 54 Copynumber: 2.9 Consensus size: 54
13296672 TTTTTAATTC
** *
13296682 GAGGGTACTTTGATAATTTTACATGTCGAGGATATTTCAGTAATTTTACAAACT
1 GAGGGTACTTTGATAATTTTACAAATCGAGGATATTTCAGTAATTTTATAAACT
**
13296736 GAGGGTA-TTTCGATAATTTTACAAATCGAGGATATTTGGGTAATTTTATAAACT
1 GAGGGTACTTT-GATAATTTTACAAATCGAGGATATTTCAGTAATTTTATAAACT
* * * * *
13296790 GGGGGTACTTTGGTAATTTTACAACT-GGGGGTATTTCAGTAATTT
1 GAGGGTACTTTGATAATTTTACAAATCGAGGATATTTCAGTAATTT
13296835 GGTAAACTAA
Statistics
Matches: 85, Mismatches: 12, Indels: 5
0.83 0.12 0.05
Matches are distributed among these distances:
53 18 0.21
54 64 0.75
55 3 0.04
ACGTcount: A:0.29, C:0.09, G:0.22, T:0.39
Consensus pattern (54 bp):
GAGGGTACTTTGATAATTTTACAAATCGAGGATATTTCAGTAATTTTATAAACT
Found at i:13296804 original size:27 final size:27
Alignment explanation
Indices: 13296709--13296834 Score: 132
Period size: 27 Copynumber: 4.7 Consensus size: 27
13296699 TTTACATGTC
* *
13296709 GAGGATATTTCAGTAATTTTACAAACT
1 GAGGGTATTTCGGTAATTTTACAAACT
*
13296736 GAGGGTATTTCGATAATTTTACAAA-T
1 GAGGGTATTTCGGTAATTTTACAAACT
* * *
13296762 CGAGGATATTTGGGTAATTTTATAAACT
1 -GAGGGTATTTCGGTAATTTTACAAACT
*
13296790 GGGGGTACTTT-GGTAATTTTAC-AACT
1 GAGGGTA-TTTCGGTAATTTTACAAACT
* *
13296816 GGGGGTATTTCAGTAATTT
1 GAGGGTATTTCGGTAATTT
13296835 GGTAAACTAA
Statistics
Matches: 84, Mismatches: 11, Indels: 9
0.81 0.11 0.09
Matches are distributed among these distances:
25 3 0.04
26 19 0.23
27 58 0.69
28 4 0.05
ACGTcount: A:0.30, C:0.09, G:0.22, T:0.39
Consensus pattern (27 bp):
GAGGGTATTTCGGTAATTTTACAAACT
Found at i:13296822 original size:26 final size:26
Alignment explanation
Indices: 13296682--13296834 Score: 121
Period size: 27 Copynumber: 5.7 Consensus size: 26
13296672 TTTTTAATTC
* **
13296682 GAGGGTACTTT-GATAATTTTACATGT
1 GAGGGTA-TTTCGGTAATTTTACAACT
* *
13296708 CGAGGATATTTCAGTAATTTTACAAACT
1 -GAGGGTATTTCGGTAATTTTAC-AACT
* *
13296736 GAGGGTATTTCGATAATTTTACAAAT
1 GAGGGTATTTCGGTAATTTTACAACT
* * *
13296762 CGAGGATATTTGGGTAATTTTATAAACT
1 -GAGGGTATTTCGGTAATTTTA-CAACT
*
13296790 GGGGGTACTTT-GGTAATTTTACAACT
1 GAGGGTA-TTTCGGTAATTTTACAACT
* *
13296816 GGGGGTATTTCAGTAATTT
1 GAGGGTATTTCGGTAATTT
13296835 GGTAAACTAA
Statistics
Matches: 102, Mismatches: 18, Indels: 13
0.77 0.14 0.10
Matches are distributed among these distances:
25 3 0.03
26 24 0.24
27 67 0.66
28 8 0.08
ACGTcount: A:0.29, C:0.09, G:0.22, T:0.39
Consensus pattern (26 bp):
GAGGGTATTTCGGTAATTTTACAACT
Found at i:13296842 original size:27 final size:25
Alignment explanation
Indices: 13296775--13296834 Score: 68
Period size: 26 Copynumber: 2.3 Consensus size: 25
13296765 GGATATTTGG
*
13296775 GTAATTTTATAAACTGGGGGTACTTTG
1 GTAA-TTT-TAAACTGGGGGTACTTTA
13296802 GTAATTTTACAACTGGGGGTA-TTTCA
1 GTAATTTTA-AACTGGGGGTACTTT-A
13296828 GTAATTT
1 GTAATTT
13296835 GGTAAACTAA
Statistics
Matches: 30, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
25 5 0.17
26 21 0.70
27 4 0.13
ACGTcount: A:0.27, C:0.08, G:0.23, T:0.42
Consensus pattern (25 bp):
GTAATTTTAAACTGGGGGTACTTTA
Found at i:13328542 original size:27 final size:28
Alignment explanation
Indices: 13328464--13328579 Score: 114
Period size: 27 Copynumber: 4.2 Consensus size: 28
13328454 CAGCATGGCT
* * * *
13328464 ACCAGATACAGA-AAATGTGACAGAGTC
1 ACCAGATACAGATATATGTGGCAGTGCC
*
13328491 ACCAGATACAGATATTTTGTGGCAGTGCC
1 ACCAGATACAGATA-TATGTGGCAGTGCC
*
13328520 ACCAGA-ACAGATATATGTGGCAGGGCC
1 ACCAGATACAGATATATGTGGCAGTGCC
*
13328547 ACCAGA-ACAGATAATTTGTGGCA-TAGCC
1 ACCAGATACAGAT-ATATGTGGCAGT-GCC
13328575 ACCAG
1 ACCAG
13328580 GATGCTTCCT
Statistics
Matches: 76, Mismatches: 9, Indels: 7
0.83 0.10 0.08
Matches are distributed among these distances:
27 36 0.47
28 25 0.33
29 15 0.20
ACGTcount: A:0.35, C:0.22, G:0.24, T:0.19
Consensus pattern (28 bp):
ACCAGATACAGATATATGTGGCAGTGCC
Found at i:13328565 original size:55 final size:56
Alignment explanation
Indices: 13328464--13328579 Score: 148
Period size: 55 Copynumber: 2.1 Consensus size: 56
13328454 CAGCATGGCT
* *
13328464 ACCAGATACAGAAAATGTGACAGAGTCACCAGATACAGATATTTTGTGGCAGT-GCC
1 ACCAGATACAGAAAATGTGACAGAGCCACCAGATACAGATAATTTGTGGCA-TAGCC
* * *
13328520 ACCAGA-ACAGATATATGTGGCAGGGCCACCAGA-ACAGATAATTTGTGGCATAGCC
1 ACCAGATACAGA-AAATGTGACAGAGCCACCAGATACAGATAATTTGTGGCATAGCC
13328575 ACCAG
1 ACCAG
13328580 GATGCTTCCT
Statistics
Matches: 53, Mismatches: 5, Indels: 5
0.84 0.08 0.08
Matches are distributed among these distances:
54 1 0.02
55 29 0.55
56 23 0.43
ACGTcount: A:0.35, C:0.22, G:0.24, T:0.19
Consensus pattern (56 bp):
ACCAGATACAGAAAATGTGACAGAGCCACCAGATACAGATAATTTGTGGCATAGCC
Found at i:13328732 original size:28 final size:28
Alignment explanation
Indices: 13328688--13328749 Score: 99
Period size: 28 Copynumber: 2.2 Consensus size: 28
13328678 TAAACCCCAA
*
13328688 GGGTATAGAGGTCATTTTGCATACATAG
1 GGGTATAGAGGTAATTTTGCATACATAG
13328716 GGGTATA-ATGGTAATTTTGCATACATAG
1 GGGTATAGA-GGTAATTTTGCATACATAG
13328744 GGGTAT
1 GGGTAT
13328750 TCTAGTACAT
Statistics
Matches: 32, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
27 1 0.03
28 31 0.97
ACGTcount: A:0.29, C:0.08, G:0.29, T:0.34
Consensus pattern (28 bp):
GGGTATAGAGGTAATTTTGCATACATAG
Found at i:13328993 original size:8 final size:8
Alignment explanation
Indices: 13328977--13329008 Score: 55
Period size: 8 Copynumber: 4.0 Consensus size: 8
13328967 CCCAAAATAC
13328977 CGGCTTTT
1 CGGCTTTT
*
13328985 CGGCATTT
1 CGGCTTTT
13328993 CGGCTTTT
1 CGGCTTTT
13329001 CGGCTTTT
1 CGGCTTTT
13329009 GCCGATCTAG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
8 22 1.00
ACGTcount: A:0.03, C:0.25, G:0.25, T:0.47
Consensus pattern (8 bp):
CGGCTTTT
Found at i:13334146 original size:27 final size:27
Alignment explanation
Indices: 13334116--13334219 Score: 199
Period size: 27 Copynumber: 3.9 Consensus size: 27
13334106 GTCAAGAAAA
13334116 AAAATCTTATTCTCAAGCATGAATAAT
1 AAAATCTTATTCTCAAGCATGAATAAT
13334143 AAAATCTTATTCTCAAGCATGAATAAT
1 AAAATCTTATTCTCAAGCATGAATAAT
*
13334170 AAAATCTTATTCTCAAGCATGAACAAT
1 AAAATCTTATTCTCAAGCATGAATAAT
13334197 AAAATCTTATTCTCAAGCATGAA
1 AAAATCTTATTCTCAAGCATGAA
13334220 CATTTCATTA
Statistics
Matches: 76, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
27 76 1.00
ACGTcount: A:0.44, C:0.16, G:0.08, T:0.32
Consensus pattern (27 bp):
AAAATCTTATTCTCAAGCATGAATAAT
Found at i:13337516 original size:15 final size:15
Alignment explanation
Indices: 13337498--13337541 Score: 61
Period size: 15 Copynumber: 2.9 Consensus size: 15
13337488 GAAGCCTAGA
*
13337498 ATAAAGAAATCGAAG
1 ATAAAGAAATCCAAG
*
13337513 ATAAAGAAATCCATG
1 ATAAAGAAATCCAAG
*
13337528 ATAAGGAAATCCAA
1 ATAAAGAAATCCAA
13337542 TTTACAGCAC
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
15 25 1.00
ACGTcount: A:0.57, C:0.11, G:0.16, T:0.16
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:13345652 original size:97 final size:97
Alignment explanation
Indices: 13345486--13345693 Score: 416
Period size: 97 Copynumber: 2.1 Consensus size: 97
13345476 TAAAGATTCG
13345486 CTCAAATCATTCAAGGTGTTTAAGGTTCAAGATTAAGCACTCGATTGTCTAACATGAGAAGTTAT
1 CTCAAATCATTCAAGGTGTTTAAGGTTCAAGATTAAGCACTCGATTGTCTAACATGAGAAGTTAT
13345551 TACCATAGGCTTGCATGGTTGTAAATGAAGCA
66 TACCATAGGCTTGCATGGTTGTAAATGAAGCA
13345583 CTCAAATCATTCAAGGTGTTTAAGGTTCAAGATTAAGCACTCGATTGTCTAACATGAGAAGTTAT
1 CTCAAATCATTCAAGGTGTTTAAGGTTCAAGATTAAGCACTCGATTGTCTAACATGAGAAGTTAT
13345648 TACCATAGGCTTGCATGGTTGTAAATGAAGCA
66 TACCATAGGCTTGCATGGTTGTAAATGAAGCA
13345680 CTCAAATCATTCAA
1 CTCAAATCATTCAA
13345694 TCAAATCTCC
Statistics
Matches: 111, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
97 111 1.00
ACGTcount: A:0.34, C:0.16, G:0.19, T:0.31
Consensus pattern (97 bp):
CTCAAATCATTCAAGGTGTTTAAGGTTCAAGATTAAGCACTCGATTGTCTAACATGAGAAGTTAT
TACCATAGGCTTGCATGGTTGTAAATGAAGCA
Found at i:13347030 original size:6 final size:6
Alignment explanation
Indices: 13347020--13347059 Score: 62
Period size: 6 Copynumber: 6.7 Consensus size: 6
13347010 AGGAAATAAT
* *
13347020 AAAATT AAAATG AAAATA AAAATA AAAATA AAAATA AAAA
1 AAAATA AAAATA AAAATA AAAATA AAAATA AAAATA AAAA
13347060 GATAAGAGGA
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
6 32 1.00
ACGTcount: A:0.80, C:0.00, G:0.03, T:0.17
Consensus pattern (6 bp):
AAAATA
Found at i:13352094 original size:56 final size:56
Alignment explanation
Indices: 13352008--13352120 Score: 181
Period size: 56 Copynumber: 2.0 Consensus size: 56
13351998 TCTCGTTGGT
* * *
13352008 TGGGATTTGAGTATCATCTTCTTGCTCGTTCTTCGTGTATCATAAGTTGCGCCTTA
1 TGGGAGTTGAGTATCATCTTCTTGCTCGTTCTCCGTGTATCATAAGTTGCACCTTA
* *
13352064 TGGGAGTTGAGTATCGTCTTCTTGCTCGTTCTCCGTGTATCGTAAGTTGCACCTTA
1 TGGGAGTTGAGTATCATCTTCTTGCTCGTTCTCCGTGTATCATAAGTTGCACCTTA
13352120 T
1 T
13352121 CTCTCTTTGA
Statistics
Matches: 52, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
56 52 1.00
ACGTcount: A:0.15, C:0.20, G:0.23, T:0.42
Consensus pattern (56 bp):
TGGGAGTTGAGTATCATCTTCTTGCTCGTTCTCCGTGTATCATAAGTTGCACCTTA
Found at i:13358040 original size:50 final size:50
Alignment explanation
Indices: 13357976--13358211 Score: 262
Period size: 50 Copynumber: 4.7 Consensus size: 50
13357966 TAAGATGGTT
*
13357976 TTAGGTCACGTGTGTAGTATTAAGTGCAGGCTACTACGAGTACCAAATAG
1 TTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGAGTACCAAATAG
* * * * *
13358026 TTAGGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGACA-AC
1 TTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGAGTACCA-A-ATAG
* * * * * *
13358077 TTCGATCACGTGTGTAGTACTAGGTGCAGGCTACTAC-ATGTATCAGATGG
1 TTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGA-GTACCAAATAG
* * * *
13358127 TTAGGTCACGTGTGTAGTACTAAGTACAGGCTACTACGTGTATCAAAT-T
1 TTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGAGTACCAAATAG
* *
13358176 TTTGGTCACATGTGTAGTACTAAGTGCAGGCTACTA
1 TTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTA
13358212 TGCATACCAG
Statistics
Matches: 154, Mismatches: 27, Indels: 11
0.80 0.14 0.06
Matches are distributed among these distances:
49 34 0.22
50 81 0.53
51 38 0.25
52 1 0.01
ACGTcount: A:0.27, C:0.18, G:0.25, T:0.30
Consensus pattern (50 bp):
TTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGAGTACCAAATAG
Found at i:13358108 original size:101 final size:99
Alignment explanation
Indices: 13357981--13358211 Score: 284
Period size: 101 Copynumber: 2.3 Consensus size: 99
13357971 TGGTTTTAGG
* *
13357981 TCACGTGTGTAGTATTAAGTGCAGGCTACTACGA-GTACCAAATAGTTAGGTCGCATGTGTAGTA
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTAC-ATGTACCAAATAGTTAGGTCACATGTGTAGTA
* *
13358045 CTAAGTGCAGGCTACTATGCGTACCAGACAACTTCGA
65 CTAAGTACAGGCTACTACGCGTACCA-A-AACTTCGA
* * * * *
13358082 TCACGTGTGTAGTACTAGGTGCAGGCTACTACATGTATCAGATGGTTAGGTCACGTGTGTAGTAC
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACATGTACCAAATAGTTAGGTCACATGTGTAGTAC
* * ** * *
13358147 TAAGTACAGGCTACTACGTGTATCAAATTTTTGG
66 TAAGTACAGGCTACTACGCGTACCAAAACTTCGA
*
13358181 TCACATGTGTAGTACTAAGTGCAGGCTACTA
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTA
13358212 TGCATACCAG
Statistics
Matches: 112, Mismatches: 17, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
99 33 0.29
100 2 0.02
101 77 0.69
ACGTcount: A:0.27, C:0.18, G:0.25, T:0.29
Consensus pattern (99 bp):
TCACGTGTGTAGTACTAAGTGCAGGCTACTACATGTACCAAATAGTTAGGTCACATGTGTAGTAC
TAAGTACAGGCTACTACGCGTACCAAAACTTCGA
Found at i:13358248 original size:150 final size:151
Alignment explanation
Indices: 13357976--13358257 Score: 404
Period size: 150 Copynumber: 1.9 Consensus size: 151
13357966 TAAGATGGTT
* * *
13357976 TTAGGTCACGTGTGTAGTATTAAGTGCAGGCTACTACGAGTACCAAATAGTTAGGTCGCATGTGT
1 TTAGGTCACGTGTGTAGTACTAAGTACAGGCTACTACGAGTACCAAATAGTTAGGTCACATGTGT
* ** *
13358041 AGTACTAAGTGCAGGCTACTATGCGTACCAGACAACTTCGATCACGTGTGTAGTACTAGGTGCAG
66 AGTACTAAGTGCAGGCTACTATGCATACCAGACAACTTCGATCACAAGGGTAGTACTAGGTGCAG
13358106 GCTACTACATGTATCAGATGG
131 GCTACTACATGTATCAGATGG
* * * *
13358127 TTAGGTCACGTGTGTAGTACTAAGTACAGGCTACTACGTGTATCAAAT-TTTTGGTCACATGTGT
1 TTAGGTCACGTGTGTAGTACTAAGTACAGGCTACTACGAGTACCAAATAGTTAGGTCACATGTGT
* * * * * *
13358191 AGTACTAAGTGCAGGCTACTATGCATACCAGATAACTTTGGTTACAAGGGTGGTACTATGTGCAG
66 AGTACTAAGTGCAGGCTACTATGCATACCAGACAACTTCGATCACAAGGGTAGTACTAGGTGCAG
13358256 GC
131 GC
13358258 CACTGAGTAT
Statistics
Matches: 114, Mismatches: 17, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
150 70 0.61
151 44 0.39
ACGTcount: A:0.27, C:0.18, G:0.26, T:0.29
Consensus pattern (151 bp):
TTAGGTCACGTGTGTAGTACTAAGTACAGGCTACTACGAGTACCAAATAGTTAGGTCACATGTGT
AGTACTAAGTGCAGGCTACTATGCATACCAGACAACTTCGATCACAAGGGTAGTACTAGGTGCAG
GCTACTACATGTATCAGATGG
Found at i:13363195 original size:33 final size:33
Alignment explanation
Indices: 13363155--13363221 Score: 107
Period size: 33 Copynumber: 2.0 Consensus size: 33
13363145 AATCAGACCA
* *
13363155 GATGATTGCTTAATGTTTTGTGATCGAATATAT
1 GATGATTGCTTAATGTTTTCTAATCGAATATAT
*
13363188 GATGATTGCTTAATTTTTTCTAATCGAATATAT
1 GATGATTGCTTAATGTTTTCTAATCGAATATAT
13363221 G
1 G
13363222 TACTGAAAGA
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
33 31 1.00
ACGTcount: A:0.28, C:0.07, G:0.18, T:0.46
Consensus pattern (33 bp):
GATGATTGCTTAATGTTTTCTAATCGAATATAT
Found at i:13364225 original size:106 final size:106
Alignment explanation
Indices: 13364036--13364254 Score: 368
Period size: 106 Copynumber: 2.1 Consensus size: 106
13364026 ATTTGAAAGT
*
13364036 AGCTTTTGATAGACAAAAATCATATGCAGATTTAAAAAGAAAAGAGATTGAGTGTTAGGTCGGTG
1 AGCTTTTGATAGACAAAAATCATATGCAGATTTAAAAAGAAAAGAGATTGAGTGTTAGGTCAGTG
*
13364101 ATAAAGTATTTTTGAAAGTATCTCCATGGAAGAAAGTTTTC
66 ATAAAGTATTTTTGAAAGTATCTCCATGGAAGAAAGTTCTC
*
13364142 AGCTTTTGATAGACAGAAATCATATGCAGATTTAAAAAGAAAAGAGATTGAGT-TTCAGGTCAGT
1 AGCTTTTGATAGACAAAAATCATATGCAGATTTAAAAAGAAAAGAGATTGAGTGTT-AGGTCAGT
* *
13364206 GATAAATTATTTTTTAAAGTATCTCCATGGAAGAAAGTTCTC
65 GATAAAGTATTTTTGAAAGTATCTCCATGGAAGAAAGTTCTC
*
13364248 AGATTTT
1 AGCTTTT
13364255 ACCGAAAAGG
Statistics
Matches: 106, Mismatches: 6, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
105 2 0.02
106 104 0.98
ACGTcount: A:0.38, C:0.09, G:0.20, T:0.32
Consensus pattern (106 bp):
AGCTTTTGATAGACAAAAATCATATGCAGATTTAAAAAGAAAAGAGATTGAGTGTTAGGTCAGTG
ATAAAGTATTTTTGAAAGTATCTCCATGGAAGAAAGTTCTC
Found at i:13371667 original size:27 final size:26
Alignment explanation
Indices: 13371615--13371674 Score: 75
Period size: 27 Copynumber: 2.3 Consensus size: 26
13371605 ATAAATATAT
*
13371615 ATATCTGTTCTAGTGGCCTAGCCACA
1 ATATCTGTTCTAGTGACCTAGCCACA
* * *
13371641 ATATCTGTATCTAGTGACTTCGTCACA
1 ATATCTGT-TCTAGTGACCTAGCCACA
13371668 ATATCTG
1 ATATCTG
13371675 GCAGCCTCGC
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 8 0.28
27 21 0.72
ACGTcount: A:0.25, C:0.23, G:0.17, T:0.35
Consensus pattern (26 bp):
ATATCTGTTCTAGTGACCTAGCCACA
Found at i:13385312 original size:33 final size:33
Alignment explanation
Indices: 13385236--13385312 Score: 84
Period size: 33 Copynumber: 2.3 Consensus size: 33
13385226 TTGTGCTAAG
* * *
13385236 GCCCAGACTGTATTGTTACTGTATAAGGCTATG
1 GCCCAGACTGTACTATTACTGTATAAGGCTATA
* * *
13385269 GTCCAAACTGTACTATTACTGTATAGGGCT-TAA
1 GCCCAGACTGTACTATTACTGTATAAGGCTAT-A
13385302 GCCCAGACTGT
1 GCCCAGACTGT
13385313 TTTGCATATT
Statistics
Matches: 35, Mismatches: 8, Indels: 2
0.78 0.18 0.04
Matches are distributed among these distances:
32 1 0.03
33 34 0.97
ACGTcount: A:0.26, C:0.21, G:0.22, T:0.31
Consensus pattern (33 bp):
GCCCAGACTGTACTATTACTGTATAAGGCTATA
Found at i:13386558 original size:12 final size:14
Alignment explanation
Indices: 13386541--13386572 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
13386531 TTGAGAACAC
13386541 ATGTGTA-G-TACT
1 ATGTGTAGGCTACT
13386553 ATGTGTAGGCTACT
1 ATGTGTAGGCTACT
13386567 ATGTGT
1 ATGTGT
13386573 TTAAGATGGT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
12 7 0.39
13 1 0.06
14 10 0.56
ACGTcount: A:0.22, C:0.09, G:0.28, T:0.41
Consensus pattern (14 bp):
ATGTGTAGGCTACT
Found at i:13386714 original size:51 final size:51
Alignment explanation
Indices: 13386589--13386779 Score: 258
Period size: 51 Copynumber: 3.8 Consensus size: 51
13386579 TGGTTTTAGG
* * ** * * * *
13386589 TCACGTGTGTAGTACTAAGTGTAGGCTACTACGTGTACCATATAGC-TAGG
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGCGTACCCGACAACTTCGA
* * * *
13386639 CCGCATGTCTAGTACTAAGTGCAGGCTACTACGCGTACCCGACAACTTCGA
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGCGTACCCGACAACTTCGA
13386690 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGCGTACCCGACAACTTCGA
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGCGTACCCGACAACTTCGA
*
13386741 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACC
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGCGTACC
13386780 GTATTGTTGG
Statistics
Matches: 123, Mismatches: 17, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
50 36 0.29
51 87 0.71
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.26
Consensus pattern (51 bp):
TCACGTGTGTAGTACTAAGTGCAGGCTACTACGCGTACCCGACAACTTCGA
Found at i:13387053 original size:16 final size:15
Alignment explanation
Indices: 13387032--13387061 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
13387022 GAATGGAGTA
13387032 AGTGAAATTATGTAAG
1 AGTGAAATT-TGTAAG
13387048 AGTGAAATTTGTAA
1 AGTGAAATTTGTAA
13387062 TAAAACAATT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.43, C:0.00, G:0.23, T:0.33
Consensus pattern (15 bp):
AGTGAAATTTGTAAG
Found at i:13388577 original size:29 final size:29
Alignment explanation
Indices: 13388544--13388640 Score: 79
Period size: 30 Copynumber: 3.3 Consensus size: 29
13388534 GTCAGTATCA
13388544 ATCTTAATTACACAATTTCTTCACTTAGT
1 ATCTTAATTACACAATTTCTTCACTTAGT
* * * * * * * *
13388573 ATCTTAATCCATAGAAATCCCTAAATTA-T
1 ATCTTAAT-TACACAATTTCTTCACTTAGT
*
13388602 CAATCTTGATTACACAATTTCTTCACTTAGT
1 --ATCTTAATTACACAATTTCTTCACTTAGT
13388633 ATCTTAAT
1 ATCTTAAT
13388641 CCATAGAAAT
Statistics
Matches: 46, Mismatches: 18, Indels: 8
0.64 0.25 0.11
Matches are distributed among these distances:
29 16 0.35
30 22 0.48
31 8 0.17
ACGTcount: A:0.34, C:0.21, G:0.04, T:0.41
Consensus pattern (29 bp):
ATCTTAATTACACAATTTCTTCACTTAGT
Found at i:13388614 original size:60 final size:60
Alignment explanation
Indices: 13388539--13388658 Score: 231
Period size: 60 Copynumber: 2.0 Consensus size: 60
13388529 TATTTGTCAG
13388539 TATCAATCTTAATTACACAATTTCTTCACTTAGTATCTTAATCCATAGAAATCCCTAAAT
1 TATCAATCTTAATTACACAATTTCTTCACTTAGTATCTTAATCCATAGAAATCCCTAAAT
*
13388599 TATCAATCTTGATTACACAATTTCTTCACTTAGTATCTTAATCCATAGAAATCCCTAAAT
1 TATCAATCTTAATTACACAATTTCTTCACTTAGTATCTTAATCCATAGAAATCCCTAAAT
13388659 CATGTTAATA
Statistics
Matches: 59, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
60 59 1.00
ACGTcount: A:0.36, C:0.22, G:0.04, T:0.38
Consensus pattern (60 bp):
TATCAATCTTAATTACACAATTTCTTCACTTAGTATCTTAATCCATAGAAATCCCTAAAT
Found at i:13394566 original size:37 final size:37
Alignment explanation
Indices: 13394507--13394652 Score: 238
Period size: 37 Copynumber: 3.9 Consensus size: 37
13394497 AGCTCAGACG
* *
13394507 AAATCTCCACACGAAGTTATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
13394544 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
* *
13394581 TACTCTCCACACGTAGTCATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
* *
13394618 TAATCTCCACACGTAGTCATCGGGTCTCACCCGGA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
13394653 ATATATTTCC
Statistics
Matches: 103, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 103 1.00
ACGTcount: A:0.25, C:0.33, G:0.19, T:0.23
Consensus pattern (37 bp):
AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
Found at i:13395087 original size:47 final size:47
Alignment explanation
Indices: 13394858--13395097 Score: 327
Period size: 47 Copynumber: 5.1 Consensus size: 47
13394848 ATATATATTT
* * * * *
13394858 CACATTGACCATTCGGCTTTACCACATATATGCATGTTAATATTCAC
1 CACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCAC
* *
13394905 CACATTGGCCATTCGGCCTTATCACACATATGCATGCTCACATTCAC
1 CACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCAC
* *
13394952 CACATTGGCCATTCGGCCTTATCACATATATACATGTTCATATTCAC
1 CACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCAC
* * * *
13394999 CACATTGACCATTCGGCCTTATCACACATATGCATGCTCACATTCAT
1 CACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCAC
* ** *
13395046 CACATTGGCCATTCGGCCTTATCACATATATACACATTCACATTCAT
1 CACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCAC
13395093 CACAT
1 CACAT
13395098 AAAATCCTAA
Statistics
Matches: 170, Mismatches: 23, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
47 170 1.00
ACGTcount: A:0.28, C:0.30, G:0.10, T:0.31
Consensus pattern (47 bp):
CACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCAC
Found at i:13395091 original size:94 final size:94
Alignment explanation
Indices: 13394857--13395097 Score: 383
Period size: 94 Copynumber: 2.6 Consensus size: 94
13394847 TATATATATT
* * * * * *
13394857 TCACATTGACCATTCGGCTTTACCACATATATGCATGTTAATATTCACCACATTGGCCATTCGGC
1 TCACATTGGCCATTCGGCCTTATCACATATATACATGTTCATATTCACCACATTGACCATTCGGC
13394922 CTTATCACACATATGCATGCTCACATTCA
66 CTTATCACACATATGCATGCTCACATTCA
*
13394951 CCACATTGGCCATTCGGCCTTATCACATATATACATGTTCATATTCACCACATTGACCATTCGGC
1 TCACATTGGCCATTCGGCCTTATCACATATATACATGTTCATATTCACCACATTGACCATTCGGC
13395016 CTTATCACACATATGCATGCTCACATTCA
66 CTTATCACACATATGCATGCTCACATTCA
** * *
13395045 TCACATTGGCCATTCGGCCTTATCACATATATACACATTCACATTCATCACAT
1 TCACATTGGCCATTCGGCCTTATCACATATATACATGTTCATATTCACCACAT
13395098 AAAATCCTAA
Statistics
Matches: 135, Mismatches: 12, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
94 135 1.00
ACGTcount: A:0.28, C:0.30, G:0.10, T:0.32
Consensus pattern (94 bp):
TCACATTGGCCATTCGGCCTTATCACATATATACATGTTCATATTCACCACATTGACCATTCGGC
CTTATCACACATATGCATGCTCACATTCA
Found at i:13405729 original size:33 final size:34
Alignment explanation
Indices: 13405646--13405733 Score: 142
Period size: 34 Copynumber: 2.6 Consensus size: 34
13405636 TGCATACTGT
13405646 ACTGATACTGTTACTGAAATGGGCTCAAGCCCAG
1 ACTGATACTGTTACTGAAATGGGCTCAAGCCCAG
* *
13405680 ATTGATACTGTTACTGAAATGGGCTCAGGCCCAG
1 ACTGATACTGTTACTGAAATGGGCTCAAGCCCAG
*
13405714 ACTGCT-CTGTTACTGAAATG
1 ACTGATACTGTTACTGAAATG
13405734 AGCTAATACC
Statistics
Matches: 50, Mismatches: 4, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
33 14 0.28
34 36 0.72
ACGTcount: A:0.27, C:0.22, G:0.24, T:0.27
Consensus pattern (34 bp):
ACTGATACTGTTACTGAAATGGGCTCAAGCCCAG
Found at i:13418424 original size:16 final size:15
Alignment explanation
Indices: 13418384--13418425 Score: 50
Period size: 16 Copynumber: 2.7 Consensus size: 15
13418374 CGATGATAAT
13418384 TATTAATGTATAATTA
1 TATTAAT-TATAATTA
13418400 TATCT-ATTATAATATA
1 TAT-TAATTATAAT-TA
13418416 TATTAATTAT
1 TATTAATTAT
13418426 TATCAACTTT
Statistics
Matches: 23, Mismatches: 0, Indels: 6
0.79 0.00 0.21
Matches are distributed among these distances:
15 7 0.30
16 15 0.65
17 1 0.04
ACGTcount: A:0.43, C:0.02, G:0.02, T:0.52
Consensus pattern (15 bp):
TATTAATTATAATTA
Found at i:13419090 original size:24 final size:25
Alignment explanation
Indices: 13419038--13419097 Score: 68
Period size: 25 Copynumber: 2.4 Consensus size: 25
13419028 AATTTTTCTC
* *
13419038 TTAAATTTTAAATTTATTTAATCAT
1 TTAATTTTTAAATTTATTGAATCAT
* *
13419063 TTAATTTTTCAATTTATTGAATTA-
1 TTAATTTTTAAATTTATTGAATCAT
13419087 TTAATATTTTA
1 TTAAT-TTTTA
13419098 TATTAATTAA
Statistics
Matches: 29, Mismatches: 5, Indels: 2
0.81 0.14 0.06
Matches are distributed among these distances:
24 5 0.17
25 24 0.83
ACGTcount: A:0.37, C:0.03, G:0.02, T:0.58
Consensus pattern (25 bp):
TTAATTTTTAAATTTATTGAATCAT
Found at i:13426519 original size:56 final size:58
Alignment explanation
Indices: 13426425--13426538 Score: 144
Period size: 57 Copynumber: 2.0 Consensus size: 58
13426415 ATTTTTTAGG
** *
13426425 TCATTTTCATTTTGGAGAAAACCACATTCATTTTCAAATGATTT-C-ATTTCTCCATTT
1 TCATTTTCATTTTGGAGAAAACCACAACCATTTCCAAATG-TTTCCTATTTCTCCATTT
* **
13426482 TCATTTTCATTTT-GAGAAAATCTTAACCATTTCCAAATGTTTCCTATTTCTCCATTT
1 TCATTTTCATTTTGGAGAAAACCACAACCATTTCCAAATGTTTCCTATTTCTCCATTT
13426539 CACCATTTCT
Statistics
Matches: 49, Mismatches: 6, Indels: 4
0.83 0.10 0.07
Matches are distributed among these distances:
55 3 0.06
56 21 0.43
57 25 0.51
ACGTcount: A:0.27, C:0.20, G:0.06, T:0.46
Consensus pattern (58 bp):
TCATTTTCATTTTGGAGAAAACCACAACCATTTCCAAATGTTTCCTATTTCTCCATTT
Found at i:13429095 original size:29 final size:29
Alignment explanation
Indices: 13429055--13429154 Score: 139
Period size: 29 Copynumber: 3.5 Consensus size: 29
13429045 AATGTGACTA
*
13429055 GGCCTAACGGGCCATATAAATGTGATTTG
1 GGCCTAATGGGCCATATAAATGTGATTTG
* *
13429084 GGCCTAATGGGCCATATACAGGTGATTTG
1 GGCCTAATGGGCCATATAAATGTGATTTG
* *
13429113 GGCCTAATGGGCCATATGAATATGA-TTG
1 GGCCTAATGGGCCATATAAATGTGATTTG
*
13429141 GGCTTAATGGGCCA
1 GGCCTAATGGGCCA
13429155 GATACAGGTA
Statistics
Matches: 63, Mismatches: 8, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
28 16 0.25
29 47 0.75
ACGTcount: A:0.26, C:0.17, G:0.30, T:0.27
Consensus pattern (29 bp):
GGCCTAATGGGCCATATAAATGTGATTTG
Found at i:13429150 original size:28 final size:29
Alignment explanation
Indices: 13429040--13429154 Score: 137
Period size: 29 Copynumber: 4.0 Consensus size: 29
13429030 GTGAGCATGA
* * *
13429040 ATATGAATGTGA-CTAGGCCTAACGGGCC
1 ATATGAATGTGATTTGGGCCTAATGGGCC
*
13429068 ATATAAATGTGATTTGGGCCTAATGGGCC
1 ATATGAATGTGATTTGGGCCTAATGGGCC
*
13429097 ATAT-ACAGGTGATTTGGGCCTAATGGGCC
1 ATATGA-ATGTGATTTGGGCCTAATGGGCC
* *
13429126 ATATGAATATGA-TTGGGCTTAATGGGCC
1 ATATGAATGTGATTTGGGCCTAATGGGCC
13429154 A
1 A
13429155 GATACAGGTA
Statistics
Matches: 76, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
28 28 0.37
29 47 0.62
30 1 0.01
ACGTcount: A:0.28, C:0.16, G:0.29, T:0.28
Consensus pattern (29 bp):
ATATGAATGTGATTTGGGCCTAATGGGCC
Found at i:13429160 original size:57 final size:58
Alignment explanation
Indices: 13429055--13429163 Score: 166
Period size: 57 Copynumber: 1.9 Consensus size: 58
13429045 AATGTGACTA
* *
13429055 GGCCTAACGGGCCATATAAATGTGATTTGGGCCTAATGGGCCATATACAGGTGATTTG
1 GGCCTAACGGGCCATATAAATATGATTTGGGCCTAATGGGCCAGATACAGGTGATTTG
* * *
13429113 GGCCTAATGGGCCATATGAATATGA-TTGGGCTTAATGGGCCAGATACAGGT
1 GGCCTAACGGGCCATATAAATATGATTTGGGCCTAATGGGCCAGATACAGGT
13429164 ATGTGAATTT
Statistics
Matches: 46, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
57 24 0.52
58 22 0.48
ACGTcount: A:0.27, C:0.17, G:0.30, T:0.27
Consensus pattern (58 bp):
GGCCTAACGGGCCATATAAATATGATTTGGGCCTAATGGGCCAGATACAGGTGATTTG
Found at i:13430253 original size:17 final size:18
Alignment explanation
Indices: 13430221--13430254 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
13430211 TTTAAGAACT
13430221 GTTTTCAATGAAAACACG
1 GTTTTCAATGAAAACACG
*
13430239 GTTTTCACT-AAAACAC
1 GTTTTCAATGAAAACAC
13430255 TTCAATGTGA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 7 0.47
18 8 0.53
ACGTcount: A:0.38, C:0.21, G:0.12, T:0.29
Consensus pattern (18 bp):
GTTTTCAATGAAAACACG
Found at i:13433601 original size:58 final size:57
Alignment explanation
Indices: 13433529--13433639 Score: 168
Period size: 57 Copynumber: 1.9 Consensus size: 57
13433519 TGAATGTGAC
* *
13433529 TGGGCCTAACGGGCCATATAAATGTGATTTGGGCCTAATGGGCCATATACAGGTGATT
1 TGGGCCTAACGGGCCATATAAATATGA-TTGGGCCTAATGGGCCAAATACAGGTGATT
* * *
13433587 TGGGCCTAATGGGCCATATGAATATGATTGGGCTTAATGGGCCAAATACAGGT
1 TGGGCCTAACGGGCCATATAAATATGATTGGGCCTAATGGGCCAAATACAGGT
13433640 ATATGAATTT
Statistics
Matches: 48, Mismatches: 5, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
57 24 0.50
58 24 0.50
ACGTcount: A:0.27, C:0.16, G:0.30, T:0.27
Consensus pattern (57 bp):
TGGGCCTAACGGGCCATATAAATATGATTGGGCCTAATGGGCCAAATACAGGTGATT
Found at i:13433626 original size:28 final size:29
Alignment explanation
Indices: 13433516--13433630 Score: 146
Period size: 29 Copynumber: 4.0 Consensus size: 29
13433506 GTGAGCATGA
* *
13433516 ATATGAATGTGA-CTGGGCCTAACGGGCC
1 ATATGAATGTGATTTGGGCCTAATGGGCC
*
13433544 ATATAAATGTGATTTGGGCCTAATGGGCC
1 ATATGAATGTGATTTGGGCCTAATGGGCC
*
13433573 ATAT-ACAGGTGATTTGGGCCTAATGGGCC
1 ATATGA-ATGTGATTTGGGCCTAATGGGCC
* *
13433602 ATATGAATATGA-TTGGGCTTAATGGGCC
1 ATATGAATGTGATTTGGGCCTAATGGGCC
13433630 A
1 A
13433631 AATACAGGTA
Statistics
Matches: 77, Mismatches: 7, Indels: 6
0.86 0.08 0.07
Matches are distributed among these distances:
28 28 0.36
29 48 0.62
30 1 0.01
ACGTcount: A:0.27, C:0.16, G:0.30, T:0.28
Consensus pattern (29 bp):
ATATGAATGTGATTTGGGCCTAATGGGCC
Found at i:13438431 original size:27 final size:27
Alignment explanation
Indices: 13438393--13438453 Score: 113
Period size: 27 Copynumber: 2.3 Consensus size: 27
13438383 GGTCATTAGG
13438393 ACCCCTGTAGTGCAAAATTACCGAAAT
1 ACCCCTGTAGTGCAAAATTACCGAAAT
*
13438420 ACCCCTGTAGTGCAAAATTATCGAAAT
1 ACCCCTGTAGTGCAAAATTACCGAAAT
13438447 ACCCCTG
1 ACCCCTG
13438454 CAGGGTAAAA
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
27 33 1.00
ACGTcount: A:0.34, C:0.28, G:0.15, T:0.23
Consensus pattern (27 bp):
ACCCCTGTAGTGCAAAATTACCGAAAT
Found at i:13438463 original size:27 final size:27
Alignment explanation
Indices: 13438393--13438479 Score: 93
Period size: 27 Copynumber: 3.2 Consensus size: 27
13438383 GGTCATTAGG
* * *
13438393 ACCCCTGTAGTGCAAAATTACCGAAAT
1 ACCCCTGCAGGGCAAAATTATCGAAAT
* *
13438420 ACCCCTGTAGTGCAAAATTATCGAAAT
1 ACCCCTGCAGGGCAAAATTATCGAAAT
* * *
13438447 ACCCCTGCAGGGTAAAATGATTGAAAT
1 ACCCCTGCAGGGCAAAATTATCGAAAT
*
13438474 GCCCCT
1 ACCCCT
13438480 ATATGGTAAA
Statistics
Matches: 53, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 53 1.00
ACGTcount: A:0.34, C:0.25, G:0.17, T:0.23
Consensus pattern (27 bp):
ACCCCTGCAGGGCAAAATTATCGAAAT
Found at i:13440805 original size:54 final size:54
Alignment explanation
Indices: 13440741--13440843 Score: 206
Period size: 54 Copynumber: 1.9 Consensus size: 54
13440731 CCACATAGAA
13440741 ATATTGGTATTTAAAATGAATTTTGATAGTATACGAAATATTATGCAAAAAATT
1 ATATTGGTATTTAAAATGAATTTTGATAGTATACGAAATATTATGCAAAAAATT
13440795 ATATTGGTATTTAAAATGAATTTTGATAGTATACGAAATATTATGCAAA
1 ATATTGGTATTTAAAATGAATTTTGATAGTATACGAAATATTATGCAAA
13440844 CTCGATATAC
Statistics
Matches: 49, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
54 49 1.00
ACGTcount: A:0.44, C:0.04, G:0.14, T:0.39
Consensus pattern (54 bp):
ATATTGGTATTTAAAATGAATTTTGATAGTATACGAAATATTATGCAAAAAATT
Found at i:13443998 original size:29 final size:30
Alignment explanation
Indices: 13443954--13444012 Score: 84
Period size: 29 Copynumber: 2.0 Consensus size: 30
13443944 TTCCCGAGCC
*
13443954 TAGGGGCAAAAGTGTAATTATGCAAAAGTT
1 TAGGGGCAAAAATGTAATTATGCAAAAGTT
* *
13443984 TAGGGG-AAAAATGTAATTTTGCCAAAGTT
1 TAGGGGCAAAAATGTAATTATGCAAAAGTT
13444013 CGTATTAAAT
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
29 20 0.77
30 6 0.23
ACGTcount: A:0.39, C:0.07, G:0.25, T:0.29
Consensus pattern (30 bp):
TAGGGGCAAAAATGTAATTATGCAAAAGTT
Found at i:13466709 original size:21 final size:21
Alignment explanation
Indices: 13466676--13466717 Score: 50
Period size: 21 Copynumber: 2.0 Consensus size: 21
13466666 AAATGGACTT
*
13466676 CAAAATAATAATTTTTATAAAA
1 CAAAATAATAATTATTA-AAAA
*
13466698 CAAAGTAA-AATTATTAAAAA
1 CAAAATAATAATTATTAAAAA
13466718 GGATTAACAC
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
20 4 0.22
21 7 0.39
22 7 0.39
ACGTcount: A:0.62, C:0.05, G:0.02, T:0.31
Consensus pattern (21 bp):
CAAAATAATAATTATTAAAAA
Found at i:13469881 original size:43 final size:43
Alignment explanation
Indices: 13469815--13469901 Score: 108
Period size: 43 Copynumber: 2.0 Consensus size: 43
13469805 ATATCATACA
*
13469815 ATGCCAATGTCCCAGACGTGGTCTTACAT-GTCAC-CATATATCG
1 ATGCCAATGTCCCAGAAGTGGTCTTAC-TCG-CACACATATATCG
*
13469858 ATGCCACTGTCCCAGATAG-GGTCTTACTCGCACACATATATCG
1 ATGCCAATGTCCCAGA-AGTGGTCTTACTCGCACACATATATCG
13469901 A
1 A
13469902 AGTCACATAT
Statistics
Matches: 39, Mismatches: 2, Indels: 6
0.83 0.04 0.13
Matches are distributed among these distances:
42 4 0.10
43 34 0.87
44 1 0.03
ACGTcount: A:0.26, C:0.29, G:0.18, T:0.26
Consensus pattern (43 bp):
ATGCCAATGTCCCAGAAGTGGTCTTACTCGCACACATATATCG
Found at i:13476488 original size:17 final size:19
Alignment explanation
Indices: 13476440--13476479 Score: 80
Period size: 19 Copynumber: 2.1 Consensus size: 19
13476430 ATTGATTCTG
13476440 ACACTCCATATCAATGACA
1 ACACTCCATATCAATGACA
13476459 ACACTCCATATCAATGACA
1 ACACTCCATATCAATGACA
13476478 AC
1 AC
13476480 TCTTTATCAT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.42, C:0.33, G:0.05, T:0.20
Consensus pattern (19 bp):
ACACTCCATATCAATGACA
Found at i:13496624 original size:85 final size:85
Alignment explanation
Indices: 13496525--13496684 Score: 293
Period size: 85 Copynumber: 1.9 Consensus size: 85
13496515 TTTAATAATT
*
13496525 CCAGTATAGATTTATAAAATACTTTGCAACTAATATATATTTGATTTTAAATAGAAAAGATATCA
1 CCAGTATAGATTTATAAAATACTTTGCAACTAATATATATTTGATTTTAAATAAAAAAGATATCA
13496590 GGAATGAAACCTACCGGCTG
66 GGAATGAAACCTACCGGCTG
* *
13496610 CCAGTATAGATTTATAAAATACTTTGCAACTAATATATTTTTTATTTTAAATAAAAAAGATATCA
1 CCAGTATAGATTTATAAAATACTTTGCAACTAATATATATTTGATTTTAAATAAAAAAGATATCA
13496675 GGAATGAAAC
66 GGAATGAAAC
13496685 TAGCAGTCTG
Statistics
Matches: 72, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
85 72 1.00
ACGTcount: A:0.43, C:0.11, G:0.12, T:0.34
Consensus pattern (85 bp):
CCAGTATAGATTTATAAAATACTTTGCAACTAATATATATTTGATTTTAAATAAAAAAGATATCA
GGAATGAAACCTACCGGCTG
Found at i:13498898 original size:16 final size:17
Alignment explanation
Indices: 13498863--13498903 Score: 50
Period size: 16 Copynumber: 2.5 Consensus size: 17
13498853 CTTTTTTTTA
13498863 TTTAATTGT-TTTATTTG
1 TTTAATT-TATTTATTTG
*
13498880 TTTCATTTATTTA-TTG
1 TTTAATTTATTTATTTG
13498896 TTTAATTT
1 TTTAATTT
13498904 TTAAAATGAA
Statistics
Matches: 21, Mismatches: 2, Indels: 3
0.81 0.08 0.12
Matches are distributed among these distances:
16 11 0.52
17 10 0.48
ACGTcount: A:0.20, C:0.02, G:0.07, T:0.71
Consensus pattern (17 bp):
TTTAATTTATTTATTTG
Found at i:13514623 original size:21 final size:19
Alignment explanation
Indices: 13514598--13514649 Score: 59
Period size: 19 Copynumber: 2.6 Consensus size: 19
13514588 TGCTGGCCCA
*
13514598 TTTTATCTTCAAATTCACACT
1 TTTTACCTTCAAATT-AC-CT
* *
13514619 TTTTACCCTCAAATTTCCT
1 TTTTACCTTCAAATTACCT
13514638 TTTTACCTTCAA
1 TTTTACCTTCAA
13514650 TTTAGTCCTT
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
19 13 0.48
20 1 0.04
21 13 0.48
ACGTcount: A:0.25, C:0.27, G:0.00, T:0.48
Consensus pattern (19 bp):
TTTTACCTTCAAATTACCT
Found at i:13515256 original size:99 final size:99
Alignment explanation
Indices: 13515085--13515266 Score: 247
Period size: 99 Copynumber: 1.8 Consensus size: 99
13515075 TCTTTTTGCC
* * * * * * * *
13515085 TAAGAATATATTAAACCTTTTGTCGCAAAGAGATATGATAGCCGAGCACCCCACCCCGGTTACTC
1 TAAGAACATATCAAACCTTTTGACGCAAAGAGAGATGACAACCAAGCACCCCACCCCAGTTACTC
*
13515150 AGCCCAACATACTCCTAATTTATTATATTTTTCT
66 AGCCCAACACACTCCTAATTTATTATATTTTTCT
* * *
13515184 TAAGAACATATCAAACCTTTTGACGCGAAGAGAGATGACAACCAAGCATCCTACCCCAGTTACTC
1 TAAGAACATATCAAACCTTTTGACGCAAAGAGAGATGACAACCAAGCACCCCACCCCAGTTACTC
*
13515249 AGCCCAACACATTCCTAA
66 AGCCCAACACACTCCTAA
13515267 AAAAAATTAT
Statistics
Matches: 70, Mismatches: 13, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
99 70 1.00
ACGTcount: A:0.34, C:0.27, G:0.13, T:0.26
Consensus pattern (99 bp):
TAAGAACATATCAAACCTTTTGACGCAAAGAGAGATGACAACCAAGCACCCCACCCCAGTTACTC
AGCCCAACACACTCCTAATTTATTATATTTTTCT
Found at i:13516440 original size:20 final size:21
Alignment explanation
Indices: 13516415--13516469 Score: 71
Period size: 20 Copynumber: 2.7 Consensus size: 21
13516405 ATATCCAAAC
13516415 AAAATAAAGTAATAAATAA-T-
1 AAAATAAAGTAATAAA-AAGTA
13516435 AAAATAAA-TAATAAAAAGTA
1 AAAATAAAGTAATAAAAAGTA
*
13516455 AAAATAAAGAAATAA
1 AAAATAAAGTAATAA
13516470 TAAAAATTGG
Statistics
Matches: 31, Mismatches: 1, Indels: 5
0.84 0.03 0.14
Matches are distributed among these distances:
18 2 0.06
19 8 0.26
20 16 0.52
21 5 0.16
ACGTcount: A:0.75, C:0.00, G:0.05, T:0.20
Consensus pattern (21 bp):
AAAATAAAGTAATAAAAAGTA
Found at i:13520753 original size:20 final size:20
Alignment explanation
Indices: 13520705--13520755 Score: 63
Period size: 20 Copynumber: 2.6 Consensus size: 20
13520695 TAATTAAACT
13520705 TAAAATAAATTATAATATAA
1 TAAAATAAATTATAATATAA
13520725 TAAAA-AAATTATTAAT-TAA
1 TAAAATAAATTA-TAATATAA
13520744 -AAAGATAAATTA
1 TAAA-ATAAATTA
13520756 AAAAAATATT
Statistics
Matches: 28, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
18 3 0.11
19 10 0.36
20 15 0.54
ACGTcount: A:0.65, C:0.00, G:0.02, T:0.33
Consensus pattern (20 bp):
TAAAATAAATTATAATATAA
Found at i:13522013 original size:21 final size:21
Alignment explanation
Indices: 13521989--13522028 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
13521979 CAAATTCTCG
*
13521989 CAAATTTCTCTCAATTTTTGT
1 CAAAGTTCTCTCAATTTTTGT
* *
13522010 CAAAGTTGTCTCTATTTTT
1 CAAAGTTCTCTCAATTTTT
13522029 TGCAAAAAAG
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.23, C:0.17, G:0.07, T:0.53
Consensus pattern (21 bp):
CAAAGTTCTCTCAATTTTTGT
Found at i:13523863 original size:18 final size:18
Alignment explanation
Indices: 13523827--13523869 Score: 50
Period size: 18 Copynumber: 2.4 Consensus size: 18
13523817 TGTCAGGTAC
* *
13523827 GTATCCTAGCTCTTATAT
1 GTATCCTAACCCTTATAT
*
13523845 GTATCCTAACCCTTTTAT
1 GTATCCTAACCCTTATAT
*
13523863 GTTTCCT
1 GTATCCT
13523870 TTTCCCAGTC
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.19, C:0.26, G:0.09, T:0.47
Consensus pattern (18 bp):
GTATCCTAACCCTTATAT
Found at i:13525805 original size:157 final size:157
Alignment explanation
Indices: 13525401--13526141 Score: 1111
Period size: 157 Copynumber: 4.8 Consensus size: 157
13525391 TTAAATACCC
*
13525401 TAAAAAACCCTAAACCCTAATTTAATTGA-TTTTTTAATTTCATAGTTAATTTAATTAATTAACC
1 TAAAAAACCTTAAACCCTAATTTAATTGATTTTTTTAATTTCATAGTTAATTTAATTAATTAACC
* * * *
13525465 CTCAACTCTAATTAAATTAAATTTTTCCTTAAAAAACACTAAACCCCTAAACCACTAAAACCCTA
66 CTCAACTCTAATTAAATTAATTTTTTCCTT-AAAAACACTAAAACACTAAACCACTAAAACCTTA
* * *
13525530 ATCTTAAAACAATCAAAAACTCTAACTT
130 ATCCTAAAACAATCAAAAACCCTAACCT
* * *
13525558 TAAAAAAACCCTAAACCCTAATTTAACTAATTTTTTTTTAATTTCATAGTTAATTTAATTAATTA
1 T-AAAAAACCTTAAACCCTAATTTAATTGA--TTTTTTTAATTTCATAGTTAATTTAATTAATTA
*
13525623 ACCCTCAACTCTAATTAAATTATTTTTTTCCTTAAAAACACTAAAACACTAAACCACTAAAACCT
63 ACCCTCAACTCTAATTAAATTAATTTTTTCCTTAAAAACACTAAAACACTAAACCACTAAAACCT
13525688 TAATCCTAAAACAATCAAAAACCCTAACCT
128 TAATCCTAAAACAATCAAAAACCCTAACCT
*
13525718 TAAAAAACCTTAAACCCTAATTTAATTGATTTTTTTATTTTCATAGTTAATTTAATTAATTAACC
1 TAAAAAACCTTAAACCCTAATTTAATTGATTTTTTTAATTTCATAGTTAATTTAATTAATTAACC
*
13525783 CTCAACTCTAATTAAATTATTTTTTTCCTTAAAAACACTAAAACACTAAACCACTAAAACCTTAA
66 CTCAACTCTAATTAAATTAATTTTTTCCTTAAAAACACTAAAACACTAAACCACTAAAACCTTAA
13525848 TCCTAAAACAATCAAAAACCCTAACCT
131 TCCTAAAACAATCAAAAACCCTAACCT
* *
13525875 TAAAAAACCTTAAACCCTAATTTAATTAATTTTTTTATTTTCATAGTTAATTTAATTAATTAACC
1 TAAAAAACCTTAAACCCTAATTTAATTGATTTTTTTAATTTCATAGTTAATTTAATTAATTAACC
* *
13525940 CTCAACTCTAATTAAATTAAATTTTCCCTT-AAAA-A-T----CACTAAA--AC-----CC-TAA
66 CTCAACTCTAATTAAATTAATTTTTTCCTTAAAAACACTAAAACACTAAACCACTAAAACCTTAA
13525990 TCCTAAAACAATCAAAAACCCTAAACCT
131 TCCTAAAACAATCAAAAACCCT-AACCT
* *
13526018 TAAAAAACTTTAAACCCTAATTTAATTGATATTTTTAATTTCATAGTTAATTTAATTAATTAACC
1 TAAAAAACCTTAAACCCTAATTTAATTGATTTTTTTAATTTCATAGTTAATTTAATTAATTAACC
*
13526083 CTCAACTCTAATTAAATTAATTTTTCCCTTAAAAAACACTAAAATC-CTAAACCACTAAA
66 CTCAACTCTAATTAAATTAATTTTTTCCTT-AAAAACACTAAAA-CACTAAACCACTAAA
13526142 TCCTAAACTT
Statistics
Matches: 541, Mismatches: 23, Indels: 40
0.90 0.04 0.07
Matches are distributed among these distances:
142 25 0.05
143 97 0.18
145 4 0.01
146 1 0.00
147 1 0.00
148 2 0.00
150 7 0.01
151 5 0.01
152 1 0.00
153 2 0.00
154 1 0.00
155 1 0.00
156 4 0.01
157 219 0.40
158 26 0.05
159 25 0.05
160 57 0.11
161 63 0.12
ACGTcount: A:0.43, C:0.20, G:0.01, T:0.35
Consensus pattern (157 bp):
TAAAAAACCTTAAACCCTAATTTAATTGATTTTTTTAATTTCATAGTTAATTTAATTAATTAACC
CTCAACTCTAATTAAATTAATTTTTTCCTTAAAAACACTAAAACACTAAACCACTAAAACCTTAA
TCCTAAAACAATCAAAAACCCTAACCT
Found at i:13525984 original size:142 final size:143
Alignment explanation
Indices: 13525834--13526132 Score: 519
Period size: 143 Copynumber: 2.1 Consensus size: 143
13525824 AACACTAAAC
*
13525834 CACTAAAACCTTAATCCTAAAACAATCAAAAACCCT-AACCTTAAAAAACCTTAAACCCTAATTT
1 CACTAAAACCCTAATCCTAAAACAATCAAAAACCCTAAACCTTAAAAAACCTTAAACCCTAATTT
* *
13525898 AATTAATTTTTTTATTTTCATAGTTAATTTAATTAATTAACCCTCAACTCTAATTAAATTAAATT
66 AATTAATATTTTTAATTTCATAGTTAATTTAATTAATTAACCCTCAACTCTAATTAAATTAAATT
*
13525963 TTCCCTTAAAAAT
131 TTCCCTTAAAAAA
*
13525976 CACTAAAACCCTAATCCTAAAACAATCAAAAACCCTAAACCTTAAAAAACTTTAAACCCTAATTT
1 CACTAAAACCCTAATCCTAAAACAATCAAAAACCCTAAACCTTAAAAAACCTTAAACCCTAATTT
* *
13526041 AATTGATATTTTTAATTTCATAGTTAATTTAATTAATTAACCCTCAACTCTAATTAAATTAATTT
66 AATTAATATTTTTAATTTCATAGTTAATTTAATTAATTAACCCTCAACTCTAATTAAATTAAATT
13526106 TTCCCTTAAAAAA
131 TTCCCTTAAAAAA
*
13526119 CACTAAAATCCTAA
1 CACTAAAACCCTAA
13526133 ACCACTAAAT
Statistics
Matches: 148, Mismatches: 8, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
142 35 0.24
143 113 0.76
ACGTcount: A:0.44, C:0.20, G:0.01, T:0.35
Consensus pattern (143 bp):
CACTAAAACCCTAATCCTAAAACAATCAAAAACCCTAAACCTTAAAAAACCTTAAACCCTAATTT
AATTAATATTTTTAATTTCATAGTTAATTTAATTAATTAACCCTCAACTCTAATTAAATTAAATT
TTCCCTTAAAAAA
Found at i:13525996 original size:24 final size:23
Alignment explanation
Indices: 13525966--13526023 Score: 71
Period size: 24 Copynumber: 2.4 Consensus size: 23
13525956 TTAAATTTTC
*
13525966 CCTTAAAAATCACTAAAACCCTAAT
1 CCTTAAAAATCA--AAAACCCTAAA
*
13525991 CCTAAAACAATCAAAAACCCTAAA
1 CCTTAAA-AATCAAAAACCCTAAA
13526015 CCTTAAAAA
1 CCTTAAAAA
13526024 ACTTTAAACC
Statistics
Matches: 29, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
23 2 0.07
24 16 0.55
25 6 0.21
26 5 0.17
ACGTcount: A:0.53, C:0.28, G:0.00, T:0.19
Consensus pattern (23 bp):
CCTTAAAAATCAAAAACCCTAAA
Found at i:13526142 original size:15 final size:16
Alignment explanation
Indices: 13526119--13526149 Score: 55
Period size: 15 Copynumber: 2.0 Consensus size: 16
13526109 CCTTAAAAAA
13526119 CACTAAAATCCTAAAC
1 CACTAAAATCCTAAAC
13526135 CACT-AAATCCTAAAC
1 CACTAAAATCCTAAAC
13526150 TTAACCCTAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 11 0.73
16 4 0.27
ACGTcount: A:0.48, C:0.32, G:0.00, T:0.19
Consensus pattern (16 bp):
CACTAAAATCCTAAAC
Found at i:13527263 original size:29 final size:26
Alignment explanation
Indices: 13527230--13527282 Score: 70
Period size: 29 Copynumber: 1.9 Consensus size: 26
13527220 TAATTTTTTT
13527230 TATATTTTCCATTTGTTAAAACTAATTCC
1 TATATTTT-CATTT-TTAAAAC-AATTCC
*
13527259 TATATTTTTATTTTTAAAACAATT
1 TATATTTTCATTTTTAAAACAATT
13527283 TAATTTTTTT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
26 4 0.17
27 7 0.30
28 4 0.17
29 8 0.35
ACGTcount: A:0.34, C:0.11, G:0.02, T:0.53
Consensus pattern (26 bp):
TATATTTTCATTTTTAAAACAATTCC
Found at i:13527344 original size:20 final size:22
Alignment explanation
Indices: 13527315--13527355 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 22
13527305 TTTACTTTCC
13527315 TTTTCTTCTTCAC-TTTTATTT
1 TTTTCTTCTTCACATTTTATTT
*
13527336 TTTTC-TCTTCTCATTTTATT
1 TTTTCTTCTTCACATTTTATT
13527356 CACTGCAGAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 6 0.33
21 12 0.67
ACGTcount: A:0.10, C:0.20, G:0.00, T:0.71
Consensus pattern (22 bp):
TTTTCTTCTTCACATTTTATTT
Found at i:13529505 original size:18 final size:18
Alignment explanation
Indices: 13529471--13529504 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
13529461 GTGTTTTAGT
13529471 TAAAATATGCATATTTTG
1 TAAAATATGCATATTTTG
*
13529489 TAAAATCTG-ATATTTT
1 TAAAATATGCATATTTT
13529505 TATATATGCG
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 7 0.47
18 8 0.53
ACGTcount: A:0.38, C:0.06, G:0.09, T:0.47
Consensus pattern (18 bp):
TAAAATATGCATATTTTG
Found at i:13531407 original size:17 final size:18
Alignment explanation
Indices: 13531385--13531418 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
13531375 CACATTGAAG
13531385 TGTTTT-ATCGAAAACCT
1 TGTTTTCATCGAAAACCT
*
13531402 TGTTTTCATTGAAAACC
1 TGTTTTCATCGAAAACC
13531419 CTTCTTTAGA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.29, C:0.18, G:0.12, T:0.41
Consensus pattern (18 bp):
TGTTTTCATCGAAAACCT
Found at i:13532592 original size:29 final size:29
Alignment explanation
Indices: 13532525--13532617 Score: 143
Period size: 29 Copynumber: 3.2 Consensus size: 29
13532515 AAGTCTACAT
* *
13532525 ACATGCATATGGCCCACTAGGCCC-AATC
1 ACATTCATATGGCCCATTAGGCCCAAATC
*
13532553 TCATTCATATGGCCCATTAGGCCCAAATC
1 ACATTCATATGGCCCATTAGGCCCAAATC
*
13532582 ACATTCGTATGGCCCATTAGGCCCAAATC
1 ACATTCATATGGCCCATTAGGCCCAAATC
13532611 ACATTCA
1 ACATTCA
13532618 AAGTTTTGCT
Statistics
Matches: 58, Mismatches: 6, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
28 21 0.36
29 37 0.64
ACGTcount: A:0.29, C:0.32, G:0.15, T:0.24
Consensus pattern (29 bp):
ACATTCATATGGCCCATTAGGCCCAAATC
Found at i:13537657 original size:15 final size:15
Alignment explanation
Indices: 13537633--13537664 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
13537623 TATGCATACA
*
13537633 AAATATAAAAGACAT
1 AAATACAAAAGACAT
13537648 AAATACAAAAGACAT
1 AAATACAAAAGACAT
13537663 AA
1 AA
13537665 TAGTGAAATG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.69, C:0.09, G:0.06, T:0.16
Consensus pattern (15 bp):
AAATACAAAAGACAT
Found at i:13542070 original size:11 final size:10
Alignment explanation
Indices: 13542046--13542090 Score: 63
Period size: 10 Copynumber: 4.3 Consensus size: 10
13542036 GGGCCCGTGT
13542046 AAACACAAAAA
1 AAACA-AAAAA
13542057 AAACAAAAACA
1 AAACAAAAA-A
13542068 AAACAAAAAA
1 AAACAAAAAA
*
13542078 ATACAAAAAA
1 AAACAAAAAA
13542088 AAA
1 AAA
13542091 TATAAAGCCC
Statistics
Matches: 31, Mismatches: 2, Indels: 3
0.86 0.06 0.08
Matches are distributed among these distances:
10 16 0.52
11 15 0.48
ACGTcount: A:0.84, C:0.13, G:0.00, T:0.02
Consensus pattern (10 bp):
AAACAAAAAA
Found at i:13542070 original size:15 final size:14
Alignment explanation
Indices: 13542050--13542090 Score: 55
Period size: 15 Copynumber: 2.8 Consensus size: 14
13542040 CCGTGTAAAC
13542050 ACAAAAAAAACAAAA
1 ACAAAAAAAA-AAAA
*
13542065 ACAAAACAAAAAAAT
1 ACAAAA-AAAAAAAA
13542080 ACAAAAAAAAA
1 ACAAAAAAAAA
13542091 TATAAAGCCC
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
14 5 0.21
15 15 0.62
16 4 0.17
ACGTcount: A:0.85, C:0.12, G:0.00, T:0.02
Consensus pattern (14 bp):
ACAAAAAAAAAAAA
Found at i:13543311 original size:5 final size:5
Alignment explanation
Indices: 13543292--13543356 Score: 64
Period size: 5 Copynumber: 13.0 Consensus size: 5
13543282 AGATATTCAA
*
13543292 AAAAA AAAAG AAAAG AAAAG -AAAG AAATA- AAGAAG AAAAAG AAAA-
1 AAAAG AAAAG AAAAG AAAAG AAAAG AAA-AG AA-AAG -AAAAG AAAAG
*
13543337 AGAAG AAAAG AAAAG AAAAG
1 AAAAG AAAAG AAAAG AAAAG
13543357 GAGAGGCCAA
Statistics
Matches: 51, Mismatches: 3, Indels: 12
0.77 0.05 0.18
Matches are distributed among these distances:
4 7 0.14
5 37 0.73
6 5 0.10
7 2 0.04
ACGTcount: A:0.80, C:0.00, G:0.18, T:0.02
Consensus pattern (5 bp):
AAAAG
Found at i:13543323 original size:8 final size:8
Alignment explanation
Indices: 13543290--13543355 Score: 60
Period size: 9 Copynumber: 7.5 Consensus size: 8
13543280 TGAGATATTC
*
13543290 AAAAAAAA
1 AAAAAAAG
13543298 AAAGAAAAG
1 AAA-AAAAG
13543307 AAAAGAAAG
1 AAAA-AAAG
*
13543316 AAATAAAG
1 AAAAAAAG
13543324 AAGAAAAAG
1 AA-AAAAAG
13543333 AAAAAGAAG
1 AAAAA-AAG
13543342 AAAAGAAAAG
1 -AAA-AAAAG
13543352 AAAA
1 AAAA
13543356 GGAGAGGCCA
Statistics
Matches: 49, Mismatches: 3, Indels: 12
0.77 0.05 0.19
Matches are distributed among these distances:
8 14 0.29
9 27 0.55
10 6 0.12
11 2 0.04
ACGTcount: A:0.82, C:0.00, G:0.17, T:0.02
Consensus pattern (8 bp):
AAAAAAAG
Found at i:13543432 original size:55 final size:55
Alignment explanation
Indices: 13543371--13543479 Score: 209
Period size: 55 Copynumber: 2.0 Consensus size: 55
13543361 GGCCAAGGCG
*
13543371 AAAACTCGCAAAGGGCGCCTTGAGGCCAAAAGGGATTTTGAGTTGAAAACCCGAC
1 AAAACTCACAAAGGGCGCCTTGAGGCCAAAAGGGATTTTGAGTTGAAAACCCGAC
13543426 AAAACTCACAAAGGGCGCCTTGAGGCCAAAAGGGATTTTGAGTTGAAAACCCGA
1 AAAACTCACAAAGGGCGCCTTGAGGCCAAAAGGGATTTTGAGTTGAAAACCCGA
13543480 AAAGGACGGC
Statistics
Matches: 53, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
55 53 1.00
ACGTcount: A:0.36, C:0.21, G:0.27, T:0.17
Consensus pattern (55 bp):
AAAACTCACAAAGGGCGCCTTGAGGCCAAAAGGGATTTTGAGTTGAAAACCCGAC
Found at i:13544855 original size:132 final size:132
Alignment explanation
Indices: 13544618--13545900 Score: 1654
Period size: 132 Copynumber: 9.8 Consensus size: 132
13544608 TGGGTCTATG
* * * *
13544618 AGGCTAAAATTTTAGATCTTGTTTCCCTGAAATTGAAGTGAAGCAGATCGAAGACAGCGAATCTG
1 AGGCTAAAATTTCAGATCTTGTTTCCCTGAAGTTGCAGTGAAGCAGATCGAAGACGGCGAATCTG
*
13544683 AGCTTCCTGAAGTTGCAGTGAAGCAGAGTTAAGCCACCAACCTAGCTCCCTAAAGTTGTAGTGGA
66 AGCTTCCTGAAGTTGCAGTGAAGCAGATTTAAGCCACCAACCTAGCTCCCTAAAGTTGTAGTGGA
13544748 GT
131 GT
* *
13544750 AGGCTAAAATTTCAGATCTTGTTTCCCTGAAGTTACAGTGAAGCAGATTGAAGACGGCGAATCTG
1 AGGCTAAAATTTCAGATCTTGTTTCCCTGAAGTTGCAGTGAAGCAGATCGAAGACGGCGAATCTG
13544815 AGCTTCCTGAAGTTGCAGTGAAGCAGATTTAAGCCACCAACCTAGCTCCCTAAAGTTGTAGTGGA
66 AGCTTCCTGAAGTTGCAGTGAAGCAGATTTAAGCCACCAACCTAGCTCCCTAAAGTTGTAGTGGA
13544880 GT
131 GT
* *
13544882 AGGCTAAAATTTCAGATCCTGTTTCCCTGAAGTTGCAGTGAAGCAGATTGAAGACGGCGAATCTG
1 AGGCTAAAATTTCAGATCTTGTTTCCCTGAAGTTGCAGTGAAGCAGATCGAAGACGGCGAATCTG
*
13544947 AGCTTCCTGAAGTTACAGTGAAGCAGATTTAAGCCACCAACCTAGCTCCCTAAAGTTGTAGTGGA
66 AGCTTCCTGAAGTTGCAGTGAAGCAGATTTAAGCCACCAACCTAGCTCCCTAAAGTTGTAGTGGA
13545012 GT
131 GT
* * *
13545014 AGACTAAAATTTCAGATCTTGTTTCCCTGAAGTTGTAGTGAAGCAGATCGAAGACGGCGAATCTA
1 AGGCTAAAATTTCAGATCTTGTTTCCCTGAAGTTGCAGTGAAGCAGATCGAAGACGGCGAATCTG
*
13545079 AGATTCCTGAAGTTGCAGTGAAGCAGATTTAAGCCACCAACCTAGCTCCCTAAAGTTGTAGTGGA
66 AGCTTCCTGAAGTTGCAGTGAAGCAGATTTAAGCCACCAACCTAGCTCCCTAAAGTTGTAGTGGA
13545144 GT
131 GT
* * * *
13545146 AAGCTAAAATTTCAGATCTTGTTTCCTTGAAGTTGTAGTGAAGCAGATCGAAGACGGTGAATCTG
1 AGGCTAAAATTTCAGATCTTGTTTCCCTGAAGTTGCAGTGAAGCAGATCGAAGACGGCGAATCTG
13545211 AGCTTCCTGAAGTTGCAGTGAAGCAGATTTAAGCCACCAACCTAGCTCCCTAAAGTTGTAGTGGA
66 AGCTTCCTGAAGTTGCAGTGAAGCAGATTTAAGCCACCAACCTAGCTCCCTAAAGTTGTAGTGGA
13545276 GT
131 GT
*
13545278 AGGCTAAAATTTCAAGATCTTGTTTCCCTGAAGTTGCAGTGAAACAGATCGAAGACGGCGAATCT
1 AGGCTAAAATTTC-AGATCTTGTTTCCCTGAAGTTGCAGTGAAGCAGATCGAAGACGGCGAATCT
* *
13545343 GAGCTTCCTGAAGTTGCAGTGAAGCAGATTTAAGCCACCATCCTAGCTCCCTAAGGTTGTAGTGG
65 GAGCTTCCTGAAGTTGCAGTGAAGCAGATTTAAGCCACCAACCTAGCTCCCTAAAGTTGTAGTGG
13545408 AGT
130 AGT
* *
13545411 AGGCTGAAGATTAT-AGATCTTGTTTCCCT-AAGATTGCAGT-AGGGCAGATCGAAGACGGCGAA
1 AGGCT-AAAATT-TCAGATCTTGTTTCCCTGAAG-TTGCAGTGA-AGCAGATCGAAGACGGCGAA
* * * **
13545473 TCT-AGGCTTCCTGATGTTGCAGTGAAGCAGATTTAAG-TA--AGTCCTAGCTCTTTAAAGTTGT
62 TCTGA-GCTTCCTGAAGTTGCAGTGAAGCAGATTTAAGCCACCA-ACCTAGCTCCCTAAAGTTGT
13545534 AGTGGAGT
125 AGTGGAGT
** * ** * * * * ****
13545542 AGGCTGAGGATTGT-AGATCTCGCCTCCCTAAAGTTGTAGTGAAGCAAATCAAAGACAATAAATC
1 AGGCT-AAAATT-TCAGATCTTGTTTCCCTGAAGTTGCAGTGAAGCAGATCGAAGACGGCGAATC
* * * *
13545606 TTG-GCTTCCTGAAGATGCAGCGAAGCAGATTTAAG----CATCCTAGCTCCCTAAGGTTGTAGT
64 -TGAGCTTCCTGAAGTTGCAGTGAAGCAGATTTAAGCCACCAACCTAGCTCCCTAAAGTTGTAGT
13545666 GGAGT
128 GGAGT
* * * *
13545671 AGGCTGAAGATTAT-AGATCTTGCTTCCCTG-AGTTGCAGT-AGGGTAGATCGAAGACGGCGAAT
1 AGGCT-AAAATT-TCAGATCTTGTTTCCCTGAAGTTGCAGTGA-AGCAGATCGAAGACGGCGAAT
* * * * *
13545733 CT-AGGCTTCCTGATGTTGCAGTAAAGTAGATTTAAG-CA--AGTCCTAGCTCTCTAAAGTTGTA
63 CTGA-GCTTCCTGAAGTTGCAGTGAAGCAGATTTAAGCCACCA-ACCTAGCTCCCTAAAGTTGTA
13545794 GTGGAGT
126 GTGGAGT
** * * * * * * ***
13545801 AGGCTGAGGATTGT-AGATCTCGTCTCCCTGAAGTTGTAGTGAGGCAAATCAAAGACGAAAAATC
1 AGGCT-AAAATT-TCAGATCTTGTTTCCCTGAAGTTGCAGTGAAGCAGATCGAAGACGGCGAATC
* * *
13545865 TTAGCTTCCTGAAGATGCAGCGAAGCAGATTTAAGC
64 TGAGCTTCCTGAAGTTGCAGTGAAGCAGATTTAAGC
13545901 AAGTCCTAGC
Statistics
Matches: 1034, Mismatches: 95, Indels: 44
0.88 0.08 0.04
Matches are distributed among these distances:
127 2 0.00
128 49 0.05
129 51 0.05
130 53 0.05
131 151 0.15
132 530 0.51
133 192 0.19
134 5 0.00
135 1 0.00
ACGTcount: A:0.30, C:0.19, G:0.25, T:0.27
Consensus pattern (132 bp):
AGGCTAAAATTTCAGATCTTGTTTCCCTGAAGTTGCAGTGAAGCAGATCGAAGACGGCGAATCTG
AGCTTCCTGAAGTTGCAGTGAAGCAGATTTAAGCCACCAACCTAGCTCCCTAAAGTTGTAGTGGA
GT
Found at i:13546582 original size:44 final size:44
Alignment explanation
Indices: 13546135--13546581 Score: 723
Period size: 44 Copynumber: 10.2 Consensus size: 44
13546125 GACCAGACAA
* * *
13546135 ATTTGGCGTCTCTATATTGGCGGAGAGAAGATCGAAGATAGTAG
1 ATTTGGCGTCTCTGTATTGGCGGAGAGCAGATCGAAGATAGCAG
* * *
13546179 ATTTGGCATCACTGTATTGGCAGAGAGCAGATCGAAGATAGCAG
1 ATTTGGCGTCTCTGTATTGGCGGAGAGCAGATCGAAGATAGCAG
13546223 ATTTGGCGTCTCTGTATTGGCGGAGAGCAGATCGAAGATAGCAG
1 ATTTGGCGTCTCTGTATTGGCGGAGAGCAGATCGAAGATAGCAG
*
13546267 ATTTGGCGTCTCTGTATTGGCAGAGAGCAGATCGAAGATAGCAG
1 ATTTGGCGTCTCTGTATTGGCGGAGAGCAGATCGAAGATAGCAG
* *
13546311 ATTTAGCGTCTCTGTATTGGCGGAGAGTAGATCGAAGATAGCAG
1 ATTTGGCGTCTCTGTATTGGCGGAGAGCAGATCGAAGATAGCAG
* *
13546355 ATTTGGCGGCTCTGTATTGGCAGAGAGCAGATCGAAGATAGCAG
1 ATTTGGCGTCTCTGTATTGGCGGAGAGCAGATCGAAGATAGCAG
13546399 ATTTGGCGTCTCTGTATTGGCGGAGAGCAGATCGAAGATAGCAG
1 ATTTGGCGTCTCTGTATTGGCGGAGAGCAGATCGAAGATAGCAG
13546443 ATTTGGCGTCTCTGTATTGGCGGAGAGCAGATCGAAGATAGCAG
1 ATTTGGCGTCTCTGTATTGGCGGAGAGCAGATCGAAGATAGCAG
* * *
13546487 ATTTGGCATCTCTGCATTGGCGGAGAGCAGATCAAAGATAGCAG
1 ATTTGGCGTCTCTGTATTGGCGGAGAGCAGATCGAAGATAGCAG
* * * *
13546531 ATTTGGCATCTCTGTATTGTCAGAGGGCAGATCGAAGATAGCAG
1 ATTTGGCGTCTCTGTATTGGCGGAGAGCAGATCGAAGATAGCAG
*
13546575 AATTGGC
1 ATTTGGC
13546582 AGAGAGCAGA
Statistics
Matches: 375, Mismatches: 28, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
44 375 1.00
ACGTcount: A:0.28, C:0.15, G:0.32, T:0.25
Consensus pattern (44 bp):
ATTTGGCGTCTCTGTATTGGCGGAGAGCAGATCGAAGATAGCAG
Found at i:13546585 original size:30 final size:29
Alignment explanation
Indices: 13546546--13546609 Score: 74
Period size: 30 Copynumber: 2.2 Consensus size: 29
13546536 GCATCTCTGT
* * * *
13546546 ATTGTCAGAGGGCAGATCGAAGATAGCAG
1 ATTGGCAGAGAGCAGATCGAAAATAACAG
*
13546575 AATTGGCAGAGAGCAGATTGAAAATAACAG
1 -ATTGGCAGAGAGCAGATCGAAAATAACAG
13546605 ATTGG
1 ATTGG
13546610 TGTTCCTGAG
Statistics
Matches: 29, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
29 5 0.17
30 24 0.83
ACGTcount: A:0.39, C:0.11, G:0.31, T:0.19
Consensus pattern (29 bp):
ATTGGCAGAGAGCAGATCGAAAATAACAG
Found at i:13549008 original size:130 final size:129
Alignment explanation
Indices: 13548835--13549195 Score: 393
Period size: 130 Copynumber: 2.8 Consensus size: 129
13548825 TTCTTCAAAG
* * * *
13548835 CGAAGACAAAATATGATGTTCGGCAATTCGCGGAATCGGGCCCTAACGTGTTGGGTTGCAATTTC
1 CGAAGACAAGATTTGATGTTTGGCAATTCGCGGAATCGTGCCCTAACGTGTTGGGTTGCAATTTC
* * * * *
13548900 GCATTTGCTCAAAATAATCAAATTTCCCTTCGAAATCCCATTCATTTCTTTTAAAATCCTTTAAA
66 G-ATTTGCTCAAAATAATCAAATATCCCTTCGAAATCCCACTCATGTCTTTTAAAATCCCTAAAA
**
13548965 CGAAGATGAGATTTGATGTTTGGCAATTCGCGGAATCGTGCCCTAACGTGTTGGGTTGCAATTTC
1 CGAAGACAAGATTTGATGTTTGGCAATTCGCGGAATCGTGCCCTAACGTGTTGGGTTGCAATTTC
* * * ** * *
13549030 GAATTTGCTCAAAATAATCGAATATCACTTTGAAATTTCGCTCGTGTCTTTTAAAATCCCTAAAA
66 G-ATTTGCTCAAAATAATCAAATATCCCTTCGAAATCCCACTCATGTCTTTTAAAATCCCTAAAA
* * * * * * * * *
13549095 CGAAGGCAATATTCGGTATTTGGCAATTTG-TGAGATCGTGCCCTAATGTGTTGGGTAGCAATTC
1 CGAAGACAAGATTTGATGTTTGGCAATTCGCGGA-ATCGTGCCCTAACGTGTTGGGTTGCAATT-
* * *
13549159 CTCGA-TTGTTTAAAATAATCAAATATCCCTTCAAAAT
64 -TCGATTTGCTCAAAATAATCAAATATCCCTTCGAAAT
13549196 TTCACTCGGC
Statistics
Matches: 192, Mismatches: 36, Indels: 6
0.82 0.15 0.03
Matches are distributed among these distances:
129 2 0.01
130 186 0.97
131 1 0.01
132 3 0.02
ACGTcount: A:0.29, C:0.19, G:0.19, T:0.33
Consensus pattern (129 bp):
CGAAGACAAGATTTGATGTTTGGCAATTCGCGGAATCGTGCCCTAACGTGTTGGGTTGCAATTTC
GATTTGCTCAAAATAATCAAATATCCCTTCGAAATCCCACTCATGTCTTTTAAAATCCCTAAAA
Found at i:13549196 original size:130 final size:132
Alignment explanation
Indices: 13548869--13549236 Score: 329
Period size: 130 Copynumber: 2.8 Consensus size: 132
13548859 AATTCGCGGA
* * * * * *
13548869 ATCGGGCCCTAACGTGTTGGGTTGCAATTTCGCATTTGCTCAAAATAATCAAATTTCCCTTCGAA
1 ATCGTGCCCTAACGTGTTGGGTAGCAATTTCGAATTTGCTCAAAATAATCAAATATCACTTCAAA
** * *** * * *** * * * * * *
13548934 ATCCCATTCATTTCTT-TTAAAATCCT-TTAAACGAAGATGAGATTTGATGTTTGGCAATTCGCG
66 ATTTCACTCGGCTCTTCTAAAAATCCTCTAAAACGAAGGCAATATTCGGTATTTGGCAATTTGTG
13548997 -G
131 AG
* * **
13548998 AATCGTGCCCTAACGTGTTGGGTTGCAATTTCGAATTTGCTCAAAATAATCGAATATCACTTTGA
1 -ATCGTGCCCTAACGTGTTGGGTAGCAATTTCGAATTTGCTCAAAATAATCAAATATCACTTCAA
* *
13549063 AATTTCGCTCGTG-TCTT-TTAAAATCC-CTAAAACGAAGGCAATATTCGGTATTTGGCAATTTG
65 AATTTCACTCG-GCTCTTCTAAAAATCCTCTAAAACGAAGGCAATATTCGGTATTTGGCAATTTG
13549125 TGAG
129 TGAG
* * * *
13549129 ATCGTGCCCTAATGTGTTGGGTAGCAATTCCTCG-A-TTGTTTAAAATAATCAAATATCCCTTCA
1 ATCGTGCCCTAACGTGTTGGGTAGCAATT--TCGAATTTGCTCAAAATAATCAAATATCACTTCA
* *
13549192 AAATTTCACTCGGCTCTTCTAAAAATCCTTTAAAACGAGGGCAAT
64 AAATTTCACTCGGCTCTTCTAAAAATCCTCTAAAACGAAGGCAAT
13549237 GCTCGATGTT
Statistics
Matches: 196, Mismatches: 34, Indels: 14
0.80 0.14 0.06
Matches are distributed among these distances:
129 1 0.01
130 168 0.86
131 10 0.05
132 17 0.09
ACGTcount: A:0.29, C:0.20, G:0.17, T:0.34
Consensus pattern (132 bp):
ATCGTGCCCTAACGTGTTGGGTAGCAATTTCGAATTTGCTCAAAATAATCAAATATCACTTCAAA
ATTTCACTCGGCTCTTCTAAAAATCCTCTAAAACGAAGGCAATATTCGGTATTTGGCAATTTGTG
AG
Found at i:13552099 original size:28 final size:28
Alignment explanation
Indices: 13552059--13552137 Score: 106
Period size: 28 Copynumber: 2.8 Consensus size: 28
13552049 GCAATCAAAT
13552059 ATGGCA-TTCAGTGTACGAAATATTGAGA
1 ATGGCACTT-AGTGTACGAAATATTGAGA
* *
13552087 ATGGCACTTAGTGTGCGAGATATTGAGA
1 ATGGCACTTAGTGTACGAAATATTGAGA
**
13552115 ATGAAACTTAGTGTACGAAATAT
1 ATGGCACTTAGTGTACGAAATAT
13552138 CAAATGATTC
Statistics
Matches: 44, Mismatches: 6, Indels: 2
0.85 0.12 0.04
Matches are distributed among these distances:
28 42 0.95
29 2 0.05
ACGTcount: A:0.35, C:0.10, G:0.25, T:0.29
Consensus pattern (28 bp):
ATGGCACTTAGTGTACGAAATATTGAGA
Found at i:13552578 original size:21 final size:22
Alignment explanation
Indices: 13552547--13552587 Score: 57
Period size: 21 Copynumber: 1.9 Consensus size: 22
13552537 GAATGTATTG
*
13552547 TGATGTATGTGGAAATGAAATA
1 TGATGTATGTGCAAATGAAATA
*
13552569 TGAT-TATGTGCCAATGAAA
1 TGATGTATGTGCAAATGAAA
13552588 CATAAATGAA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 13 0.76
22 4 0.24
ACGTcount: A:0.39, C:0.05, G:0.24, T:0.32
Consensus pattern (22 bp):
TGATGTATGTGCAAATGAAATA
Found at i:13559865 original size:40 final size:40
Alignment explanation
Indices: 13559781--13559964 Score: 196
Period size: 40 Copynumber: 4.6 Consensus size: 40
13559771 TTGAATGCTG
* * * *
13559781 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACT-AT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTATTAAT
** *
13559820 ATCCGGACTAAGAT-CCGAAGGTATTTGTGCGAGTTATTAAT
1 -TCCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGTTATTAAT
* * *
13559861 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAGATACTAAT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTATTAAT
* *
13559901 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTT-TTAAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTATT-AAT
13559941 TCCGGGTTAAGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
13559965 GAATGAGTTA
Statistics
Matches: 123, Mismatches: 16, Indels: 10
0.83 0.11 0.07
Matches are distributed among these distances:
39 2 0.02
40 111 0.90
41 10 0.08
ACGTcount: A:0.24, C:0.21, G:0.27, T:0.28
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTATTAAT
Found at i:13559918 original size:80 final size:81
Alignment explanation
Indices: 13559781--13559961 Score: 221
Period size: 80 Copynumber: 2.3 Consensus size: 81
13559771 TTGAATGCTG
* * *
13559781 TCCGGGCTAAGTCCCGAAGG-CTTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGTATT
1 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAAGTGACTATATCCGGACTAAGATCCGAAGGCATT
* *
13559845 TGTGCGAGTTATT-AAT
66 CGTGCGAGTT-TTAAAA
**
13559861 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCG-AGAT-ACTA-ATTCCGGGTTAAG-TCCCGAAGGC
1 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAAG-TGACTATA-TCCGGACTAAGAT-CCGAAGGC
13559922 ATTCGTGCGAGTTTTAAAA
63 ATTCGTGCGAGTTTTAAAA
13559941 TCCGGGTTAAGTCCCGAAGGC
1 TCCGGGTTAAGTCCCGAAGGC
13559962 ATTGAATGAG
Statistics
Matches: 89, Mismatches: 7, Indels: 10
0.84 0.07 0.09
Matches are distributed among these distances:
79 4 0.04
80 76 0.85
81 9 0.10
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.28
Consensus pattern (81 bp):
TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAAGTGACTATATCCGGACTAAGATCCGAAGGCATT
CGTGCGAGTTTTAAAA
Found at i:13559985 original size:39 final size:38
Alignment explanation
Indices: 13559862--13560011 Score: 122
Period size: 40 Copynumber: 3.8 Consensus size: 38
13559852 GTTATTAATT
* ** * *
13559862 CCGGGTTAAGTCCCGAAGGCCTTTGTGCGAGATACTAATT
1 CCGGGTTAAGTCCCGAAGG-CATTGAACGAGTTACT-ATA
** * *
13559902 CCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTT-TTAAAA
1 CCGGGTTAAGTCCCGAAGGCATT-GAACGAGTTACT-ATA
*
13559941 TCCGGGTTAAGTCCCGAAGGCATTGAATGAGTTACTATGA
1 -CCGGGTTAAGTCCCGAAGGCATTGAACGAGTTACTAT-A
* *
13559981 CCGGGCTATGTCCCGAAGGCACTTGAACGAG
1 CCGGGTTAAGTCCCGAAGGCA-TTGAACGAG
13560012 GAGCTATATC
Statistics
Matches: 92, Mismatches: 13, Indels: 10
0.80 0.11 0.09
Matches are distributed among these distances:
39 32 0.35
40 60 0.65
ACGTcount: A:0.25, C:0.22, G:0.29, T:0.25
Consensus pattern (38 bp):
CCGGGTTAAGTCCCGAAGGCATTGAACGAGTTACTATA
Found at i:13567766 original size:40 final size:40
Alignment explanation
Indices: 13567682--13567865 Score: 196
Period size: 40 Copynumber: 4.6 Consensus size: 40
13567672 TTGAATGCTG
* * * *
13567682 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACT-AT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTATTAAT
** *
13567721 ATCCGGACTAAGAT-CCGAAGGTATTTGTGCGAGTTATTAAT
1 -TCCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGTTATTAAT
* * *
13567762 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAGATACTAAT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTATTAAT
* *
13567802 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTT-TTAAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTATT-AAT
13567842 TCCGGGTTAAGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
13567866 GAATGAGTTA
Statistics
Matches: 123, Mismatches: 16, Indels: 10
0.83 0.11 0.07
Matches are distributed among these distances:
39 2 0.02
40 111 0.90
41 10 0.08
ACGTcount: A:0.24, C:0.21, G:0.27, T:0.28
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTATTAAT
Found at i:13567819 original size:80 final size:81
Alignment explanation
Indices: 13567682--13567862 Score: 221
Period size: 80 Copynumber: 2.3 Consensus size: 81
13567672 TTGAATGCTG
* * *
13567682 TCCGGGCTAAGTCCCGAAGG-CTTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGTATT
1 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAAGTGACTATATCCGGACTAAGATCCGAAGGCATT
* *
13567746 TGTGCGAGTTATT-AAT
66 CGTGCGAGTT-TTAAAA
**
13567762 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCG-AGAT-ACTA-ATTCCGGGTTAAG-TCCCGAAGGC
1 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAAG-TGACTATA-TCCGGACTAAGAT-CCGAAGGC
13567823 ATTCGTGCGAGTTTTAAAA
63 ATTCGTGCGAGTTTTAAAA
13567842 TCCGGGTTAAGTCCCGAAGGC
1 TCCGGGTTAAGTCCCGAAGGC
13567863 ATTGAATGAG
Statistics
Matches: 89, Mismatches: 7, Indels: 10
0.84 0.07 0.09
Matches are distributed among these distances:
79 4 0.04
80 76 0.85
81 9 0.10
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.28
Consensus pattern (81 bp):
TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAAGTGACTATATCCGGACTAAGATCCGAAGGCATT
CGTGCGAGTTTTAAAA
Found at i:13567886 original size:39 final size:38
Alignment explanation
Indices: 13567763--13567912 Score: 122
Period size: 40 Copynumber: 3.8 Consensus size: 38
13567753 GTTATTAATT
* ** * *
13567763 CCGGGTTAAGTCCCGAAGGCCTTTGTGCGAGATACTAATT
1 CCGGGTTAAGTCCCGAAGG-CATTGAACGAGTTACT-ATA
** * *
13567803 CCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTT-TTAAAA
1 CCGGGTTAAGTCCCGAAGGCATT-GAACGAGTTACT-ATA
*
13567842 TCCGGGTTAAGTCCCGAAGGCATTGAATGAGTTACTATGA
1 -CCGGGTTAAGTCCCGAAGGCATTGAACGAGTTACTAT-A
* *
13567882 CCGGGCTATGTCCCGAAGGCACTTGAACGAG
1 CCGGGTTAAGTCCCGAAGGCA-TTGAACGAG
13567913 GAGCTATATC
Statistics
Matches: 92, Mismatches: 13, Indels: 10
0.80 0.11 0.09
Matches are distributed among these distances:
39 32 0.35
40 60 0.65
ACGTcount: A:0.25, C:0.22, G:0.29, T:0.25
Consensus pattern (38 bp):
CCGGGTTAAGTCCCGAAGGCATTGAACGAGTTACTATA
Found at i:13575937 original size:26 final size:27
Alignment explanation
Indices: 13575877--13575938 Score: 74
Period size: 26 Copynumber: 2.3 Consensus size: 27
13575867 TTATTCGTTC
**
13575877 AATTAATAAAAATCATTAAATCAAATTT
1 AATTAA-AAAAATCATTAAATCAAAAAT
*
13575905 AA-CAAAAAAATCATTAAA-CAAAAAT
1 AATTAAAAAAATCATTAAATCAAAAAT
13575930 AATTAAAAA
1 AATTAAAAA
13575939 CCACTTGATT
Statistics
Matches: 29, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
25 7 0.24
26 18 0.62
27 2 0.07
28 2 0.07
ACGTcount: A:0.66, C:0.08, G:0.00, T:0.26
Consensus pattern (27 bp):
AATTAAAAAAATCATTAAATCAAAAAT
Found at i:13578627 original size:28 final size:28
Alignment explanation
Indices: 13578595--13578668 Score: 94
Period size: 29 Copynumber: 2.6 Consensus size: 28
13578585 GCATGACTAT
*
13578595 GAATGTGATTTGGCCTAATGAGCCGTAC
1 GAATGTGATTTGGCCTAATGAGCCATAC
* *
13578623 GAATGTGATTTGGGCCTAATGGGCCATAT
1 GAATGTGATTT-GGCCTAATGAGCCATAC
* *
13578652 GAATGAGATTGGGCCTA
1 GAATGTGATTTGGCCTA
13578669 GTGGGCTATA
Statistics
Matches: 40, Mismatches: 5, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
28 17 0.43
29 23 0.57
ACGTcount: A:0.26, C:0.15, G:0.31, T:0.28
Consensus pattern (28 bp):
GAATGTGATTTGGCCTAATGAGCCATAC
Found at i:13578655 original size:29 final size:29
Alignment explanation
Indices: 13578592--13578685 Score: 111
Period size: 28 Copynumber: 3.3 Consensus size: 29
13578582 GAAGCATGAC
* *
13578592 TATGAATGTGATTT-GGCCTAATGAGCCG
1 TATGAATGTGATTTGGGCCTAATGGGCCA
*
13578620 TACGAATGTGATTTGGGCCTAATGGGCCA
1 TATGAATGTGATTTGGGCCTAATGGGCCA
* * *
13578649 TATGAATGAGA-TTGGGCCTAGTGGGCTA
1 TATGAATGTGATTTGGGCCTAATGGGCCA
*
13578677 TATGCATGT
1 TATGAATGT
13578686 ATGTAGACTT
Statistics
Matches: 56, Mismatches: 9, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
28 35 0.62
29 21 0.38
ACGTcount: A:0.24, C:0.14, G:0.31, T:0.31
Consensus pattern (29 bp):
TATGAATGTGATTTGGGCCTAATGGGCCA
Found at i:13579803 original size:17 final size:18
Alignment explanation
Indices: 13579770--13579803 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
13579760 TCTAAGAAAG
13579770 GGTTTTCAATGAAAACAA
1 GGTTTTCAATGAAAACAA
*
13579788 GGTTTTCGAT-AAAACA
1 GGTTTTCAATGAAAACA
13579804 CTTCAATGTG
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.41, C:0.12, G:0.18, T:0.29
Consensus pattern (18 bp):
GGTTTTCAATGAAAACAA
Found at i:13596671 original size:21 final size:20
Alignment explanation
Indices: 13596631--13596671 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 20
13596621 GTAGCAAAAA
*
13596631 TTTATTTTCTAATGATAAAT
1 TTTATTTTCTAATAATAAAT
13596651 TTTATTTTCTAAGTAATAAAT
1 TTTATTTTCTAA-TAATAAAT
13596672 CATTTTTGGT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 12 0.63
21 7 0.37
ACGTcount: A:0.37, C:0.05, G:0.05, T:0.54
Consensus pattern (20 bp):
TTTATTTTCTAATAATAAAT
Found at i:13597666 original size:12 final size:13
Alignment explanation
Indices: 13597638--13597670 Score: 50
Period size: 12 Copynumber: 2.6 Consensus size: 13
13597628 TTATTTTTTT
13597638 TTCTCCATCTACC
1 TTCTCCATCTACC
*
13597651 TTCTCC-TCTTCC
1 TTCTCCATCTACC
13597663 TTCTCCAT
1 TTCTCCAT
13597671 AGCTGAACCC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
12 11 0.61
13 7 0.39
ACGTcount: A:0.09, C:0.45, G:0.00, T:0.45
Consensus pattern (13 bp):
TTCTCCATCTACC
Found at i:13598783 original size:28 final size:28
Alignment explanation
Indices: 13598739--13598801 Score: 90
Period size: 28 Copynumber: 2.2 Consensus size: 28
13598729 ATTTAATAGA
*
13598739 ATACCCCTATGTATGCAAAATTACAATT
1 ATACCCCTATGTATGCAAAATGACAATT
* **
13598767 ATACCCCTATGTGTGCAAAATGACCTTT
1 ATACCCCTATGTATGCAAAATGACAATT
13598795 ATACCCC
1 ATACCCC
13598802 CTAGGGTTAA
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
28 31 1.00
ACGTcount: A:0.33, C:0.27, G:0.10, T:0.30
Consensus pattern (28 bp):
ATACCCCTATGTATGCAAAATGACAATT
Found at i:13598966 original size:27 final size:28
Alignment explanation
Indices: 13598920--13598999 Score: 108
Period size: 27 Copynumber: 2.9 Consensus size: 28
13598910 CTGATGGCTA
* *
13598920 TGCCACAAATTATCTGTTCTGGTGGCCC
1 TGCCACAAAATATCTGTTCTGGTGGCAC
**
13598948 TGCCAC-GTATATCTGTTCTGGTGGCAC
1 TGCCACAAAATATCTGTTCTGGTGGCAC
13598975 TGCCACAAAATATCTGTATCTGGTG
1 TGCCACAAAATATCTGT-TCTGGTG
13599000 ACTCTGTCAC
Statistics
Matches: 44, Mismatches: 6, Indels: 3
0.83 0.11 0.06
Matches are distributed among these distances:
27 23 0.52
28 14 0.32
29 7 0.16
ACGTcount: A:0.20, C:0.25, G:0.23, T:0.33
Consensus pattern (28 bp):
TGCCACAAAATATCTGTTCTGGTGGCAC
Found at i:13599010 original size:29 final size:28
Alignment explanation
Indices: 13598920--13599010 Score: 94
Period size: 27 Copynumber: 3.2 Consensus size: 28
13598910 CTGATGGCTA
* * *
13598920 TGCCACAAATTATCTGTTCTGGTGGCCC
1 TGCCACAAAATATCTGTTCTGGTGACAC
** *
13598948 TGCCAC-GTATATCTGTTCTGGTGGCAC
1 TGCCACAAAATATCTGTTCTGGTGACAC
*
13598975 TGCCACAAAATATCTGTATCTGGTGACTC
1 TGCCACAAAATATCTGT-TCTGGTGACAC
*
13599004 TGTCACA
1 TGCCACA
13599011 TTTTCTGTAT
Statistics
Matches: 52, Mismatches: 9, Indels: 3
0.81 0.14 0.05
Matches are distributed among these distances:
27 23 0.44
28 14 0.27
29 15 0.29
ACGTcount: A:0.21, C:0.26, G:0.21, T:0.32
Consensus pattern (28 bp):
TGCCACAAAATATCTGTTCTGGTGACAC
Found at i:13599018 original size:55 final size:56
Alignment explanation
Indices: 13598920--13599024 Score: 133
Period size: 55 Copynumber: 1.9 Consensus size: 56
13598910 CTGATGGCTA
* * *
13598920 TGCCACAAATTATCTGTTCTGGTGGCCCTGCCACGTATATCTGT-TCTGGTGGCAC
1 TGCCACAAAATATCTGTTCTGGTGACCCTGCCACATATATCTGTATCTGGTGGCAC
* * *
13598975 TGCCACAAAATATCTGTATCTGGTGACTCTGTCACAT-TTTCTGTATCTGG
1 TGCCACAAAATATCTGT-TCTGGTGACCCTGCCACATATATCTGTATCTGG
13599025 CAGCCATGCT
Statistics
Matches: 42, Mismatches: 6, Indels: 3
0.82 0.12 0.06
Matches are distributed among these distances:
55 22 0.52
56 20 0.48
ACGTcount: A:0.19, C:0.25, G:0.21, T:0.35
Consensus pattern (56 bp):
TGCCACAAAATATCTGTTCTGGTGACCCTGCCACATATATCTGTATCTGGTGGCAC
Found at i:13600116 original size:11 final size:10
Alignment explanation
Indices: 13600088--13600121 Score: 50
Period size: 10 Copynumber: 3.3 Consensus size: 10
13600078 AGCCTGTAAG
13600088 TATTCTGAAT
1 TATTCTGAAT
*
13600098 TTTTCTGAAT
1 TATTCTGAAT
13600108 ATATTCTGAAT
1 -TATTCTGAAT
13600119 TAT
1 TAT
13600122 CTGTCTGTAC
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
10 12 0.57
11 9 0.43
ACGTcount: A:0.29, C:0.09, G:0.09, T:0.53
Consensus pattern (10 bp):
TATTCTGAAT
Found at i:13605401 original size:12 final size:13
Alignment explanation
Indices: 13605373--13605405 Score: 50
Period size: 12 Copynumber: 2.6 Consensus size: 13
13605363 TTATTTCTTT
13605373 TTCTCCATCTACC
1 TTCTCCATCTACC
*
13605386 TTCTCC-TCTTCC
1 TTCTCCATCTACC
13605398 TTCTCCAT
1 TTCTCCAT
13605406 AGCCGAACCC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
12 11 0.61
13 7 0.39
ACGTcount: A:0.09, C:0.45, G:0.00, T:0.45
Consensus pattern (13 bp):
TTCTCCATCTACC
Found at i:13606498 original size:28 final size:28
Alignment explanation
Indices: 13606466--13606528 Score: 99
Period size: 28 Copynumber: 2.2 Consensus size: 28
13606456 ATTTACTAGA
*
13606466 ATACCCCTATGTATGCAAAATTACCATT
1 ATACCCCTATGTATGCAAAATGACCATT
* *
13606494 ATACCCCTATGTGTGCAAAATGACCTTT
1 ATACCCCTATGTATGCAAAATGACCATT
13606522 ATACCCC
1 ATACCCC
13606529 CTAGGGTTAA
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
28 32 1.00
ACGTcount: A:0.32, C:0.29, G:0.10, T:0.30
Consensus pattern (28 bp):
ATACCCCTATGTATGCAAAATGACCATT
Found at i:13606695 original size:27 final size:28
Alignment explanation
Indices: 13606637--13606726 Score: 105
Period size: 27 Copynumber: 3.2 Consensus size: 28
13606627 AGGAAGCGTC
*
13606637 CTGGTGGCTA-TGCCACAAATTATCTGTT
1 CTGGTGGC-ACTGCCACAAAATATCTGTT
**
13606665 CTGGTGGTC-CTGCCAC-GTATATCTGTT
1 CTGGTGG-CACTGCCACAAAATATCTGTT
13606692 CTGGTGGCACTGCCACAAAATATCTGTAT
1 CTGGTGGCACTGCCACAAAATATCTGT-T
13606721 CTGGTG
1 CTGGTG
13606727 ACTCTGTCAC
Statistics
Matches: 52, Mismatches: 5, Indels: 9
0.79 0.08 0.14
Matches are distributed among these distances:
26 1 0.02
27 22 0.42
28 21 0.40
29 8 0.15
ACGTcount: A:0.19, C:0.23, G:0.24, T:0.33
Consensus pattern (28 bp):
CTGGTGGCACTGCCACAAAATATCTGTT
Found at i:13606737 original size:29 final size:28
Alignment explanation
Indices: 13606647--13606737 Score: 87
Period size: 27 Copynumber: 3.2 Consensus size: 28
13606637 CTGGTGGCTA
* *
13606647 TGCCACAAATTATCTGTTCTGGTGGTC-C
1 TGCCACAAAATATCTGTTCTGGT-GACAC
** *
13606675 TGCCAC-GTATATCTGTTCTGGTGGCAC
1 TGCCACAAAATATCTGTTCTGGTGACAC
*
13606702 TGCCACAAAATATCTGTATCTGGTGACTC
1 TGCCACAAAATATCTGT-TCTGGTGACAC
*
13606731 TGTCACA
1 TGCCACA
13606738 TTTTCTGTAT
Statistics
Matches: 51, Mismatches: 9, Indels: 5
0.78 0.14 0.08
Matches are distributed among these distances:
26 2 0.04
27 20 0.39
28 14 0.27
29 15 0.29
ACGTcount: A:0.21, C:0.25, G:0.21, T:0.33
Consensus pattern (28 bp):
TGCCACAAAATATCTGTTCTGGTGACAC
Found at i:13606745 original size:55 final size:56
Alignment explanation
Indices: 13606637--13606751 Score: 130
Period size: 55 Copynumber: 2.1 Consensus size: 56
13606627 AGGAAGCGTC
* * *
13606637 CTGGTGGCTATGCCACAAATTATCTGTTCTGGTGGTCCTGCCACGTATATCTGT-T
1 CTGGTGGCTATGCCACAAAATATCTGTTCTGGTGCTCCTGCCACATATATCTGTAT
* *
13606692 CTGGTGGC-ACTGCCACAAAATATCTGTATCTGGTGACT-CTGTCACAT-TTTCTGTAT
1 CTGGTGGCTA-TGCCACAAAATATCTGT-TCTGGTG-CTCCTGCCACATATATCTGTAT
13606748 CTGG
1 CTGG
13606752 CAGCCATGCT
Statistics
Matches: 51, Mismatches: 5, Indels: 7
0.81 0.08 0.11
Matches are distributed among these distances:
54 1 0.02
55 30 0.59
56 19 0.37
57 1 0.02
ACGTcount: A:0.18, C:0.23, G:0.23, T:0.36
Consensus pattern (56 bp):
CTGGTGGCTATGCCACAAAATATCTGTTCTGGTGCTCCTGCCACATATATCTGTAT
Found at i:13611098 original size:31 final size:31
Alignment explanation
Indices: 13611048--13611106 Score: 84
Period size: 32 Copynumber: 1.9 Consensus size: 31
13611038 AGCCCCCAAT
*
13611048 TTTTCACCAACTTTTAAGGGACCTAAAAAAAC
1 TTTTCACCAACTTTTAAGGG-CCCAAAAAAAC
*
13611080 TTTTCTCCAAC-TTTAAGGGCCCAAAAA
1 TTTTCACCAACTTTTAAGGGCCCAAAAA
13611107 TGTCAAGAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
30 7 0.28
31 8 0.32
32 10 0.40
ACGTcount: A:0.37, C:0.24, G:0.10, T:0.29
Consensus pattern (31 bp):
TTTTCACCAACTTTTAAGGGCCCAAAAAAAC
Found at i:13612657 original size:30 final size:31
Alignment explanation
Indices: 13612633--13612691 Score: 84
Period size: 30 Copynumber: 1.9 Consensus size: 31
13612623 GTAAATACTC
* *
13612633 AAAATTTGAGGGATTAA-AGTGTAAATATGA
1 AAAATTTGAAGGACTAATAGTGTAAATATGA
*
13612663 AAAATTTGAAGGACTAATAGTGAAAATAT
1 AAAATTTGAAGGACTAATAGTGTAAATAT
13612692 TTTAAGTGTG
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
30 15 0.60
31 10 0.40
ACGTcount: A:0.49, C:0.02, G:0.20, T:0.29
Consensus pattern (31 bp):
AAAATTTGAAGGACTAATAGTGTAAATATGA
Found at i:13612957 original size:27 final size:28
Alignment explanation
Indices: 13612923--13612978 Score: 71
Period size: 30 Copynumber: 2.0 Consensus size: 28
13612913 ATTTAATTAG
13612923 ATAAATA-TTATT-TTATTAATATTTTA
1 ATAAATATTTATTATTATTAATATTTTA
*
13612949 ATAAGATATTTTATTATTATTATTATTTTA
1 ATAA-ATA-TTTATTATTATTAATATTTTA
13612979 TTTGTATATA
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
26 4 0.16
27 3 0.12
29 5 0.20
30 13 0.52
ACGTcount: A:0.39, C:0.00, G:0.02, T:0.59
Consensus pattern (28 bp):
ATAAATATTTATTATTATTAATATTTTA
Found at i:13615154 original size:46 final size:46
Alignment explanation
Indices: 13615087--13615427 Score: 411
Period size: 46 Copynumber: 7.5 Consensus size: 46
13615077 TGTTTCTGAA
** *
13615087 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATTAC
1 ATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGAC
** *
13615133 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACGTGAC
1 ATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGAC
*
13615179 ATGAAAAGAATAAGACCATGGTTGAAAGATACCATGGCAACATGAC
1 ATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGAC
* * ** *
13615225 -GGAAATGAATAAGATCATGGTTGAAAGATACCATGGCAATGTAAC
1 ATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGAC
* * *
13615270 ATGAAATGAACAAGATCATGGTTGAAAGATACCATGGCAATATGAC
1 ATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGAC
** *
13615316 GGGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGAT
1 ATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGAC
* * * * * *
13615362 A-GAAAATGAGTAAGACCATAGTTGAAAGACACTATGGCATCATGTC
1 ATG-AAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGAC
*
13615408 --GAAGATAAATAAGACCATGG
1 ATGAA-ATGAATAAGACCATGG
13615428 ATGGGAGACG
Statistics
Matches: 259, Mismatches: 33, Indels: 7
0.87 0.11 0.02
Matches are distributed among these distances:
44 2 0.01
45 54 0.21
46 203 0.78
ACGTcount: A:0.42, C:0.14, G:0.23, T:0.21
Consensus pattern (46 bp):
ATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGAC
Found at i:13615335 original size:137 final size:138
Alignment explanation
Indices: 13615097--13615400 Score: 430
Period size: 137 Copynumber: 2.2 Consensus size: 138
13615087 ATGAAATGTG
* ***
13615097 TAAGACCATGGTTGAAAGATACCATGGCAACATTACATGAAATGTGTAAGACCATGGTTGAAAGA
1 TAAGACCATGGTTGAAAGATACCATGGCAACATAACATGAAATGAACAAGACCATGGTTGAAAGA
* * *
13615162 TACCATGGCAACGTGACATGAAAAGAATAAGACCATGGTTGAAAGATACCATGGCAACATGA-CG
66 TACCATGGCAACATGACAGGAAAAGAATAAGACCATGGTTGAAAGATACCATGGCAACATGATAG
*
13615226 GAAATGAA
131 AAAATGAA
* ** *
13615234 TAAGATCATGGTTGAAAGATACCATGGCAATGTAACATGAAATGAACAAGATCATGGTTGAAAGA
1 TAAGACCATGGTTGAAAGATACCATGGCAACATAACATGAAATGAACAAGACCATGGTTGAAAGA
* * *
13615299 TACCATGGCAATATGACGGGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGATAG
66 TACCATGGCAACATGACAGGAAAAGAATAAGACCATGGTTGAAAGATACCATGGCAACATGATAG
*
13615364 AAAATGAG
131 AAAATGAA
* * *
13615372 TAAGACCATAGTTGAAAGACACTATGGCA
1 TAAGACCATGGTTGAAAGATACCATGGCA
13615401 TCATGTCGAA
Statistics
Matches: 146, Mismatches: 20, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
137 114 0.78
138 32 0.22
ACGTcount: A:0.42, C:0.14, G:0.23, T:0.20
Consensus pattern (138 bp):
TAAGACCATGGTTGAAAGATACCATGGCAACATAACATGAAATGAACAAGACCATGGTTGAAAGA
TACCATGGCAACATGACAGGAAAAGAATAAGACCATGGTTGAAAGATACCATGGCAACATGATAG
AAAATGAA
Found at i:13615421 original size:183 final size:183
Alignment explanation
Indices: 13615098--13615427 Score: 475
Period size: 183 Copynumber: 1.8 Consensus size: 183
13615088 TGAAATGTGT
* * **
13615098 AAGACCATGGTTGAAAGATACCATGGCAACATTACATGAAATGTGTAAGACCATGGTTGAAAGAT
1 AAGACCATGGTTGAAAGATACCATGGCAACATGACAGGAAATGAATAAGACCATGGTTGAAAGAT
* * *
13615163 ACCATGGCAACGTGACATGAAAAGAATAAGACCATGGTTGAAAGATACCATGGCAACATGACGGA
66 ACCATGGCAACATGACATGAAAAGAATAAGACCATAGTTGAAAGACACCATGGCAACATGACGGA
* *
13615228 AATGAATAAGATCATGGTTGAAAGATACCATGGCAATGTAACATGAAATGAAC
131 AATAAATAAGACCATGGTTGAAAGATACCATGGCAATGTAACATGAAATGAAC
* * *
13615281 AAGATCATGGTTGAAAGATACCATGGCAATATGACGGGAAATGAATAAGACCATGGTTGAAAGAT
1 AAGACCATGGTTGAAAGATACCATGGCAACATGACAGGAAATGAATAAGACCATGGTTGAAAGAT
* * * * *
13615346 ACCATGGCAACATGATA-GAAAATGAGTAAGACCATAGTTGAAAGACACTATGGCATCATGTC-G
66 ACCATGGCAACATGACATGAAAA-GAATAAGACCATAGTTGAAAGACACCATGGCAACATGACGG
13615409 AAGATAAATAAGACCATGG
130 AA-ATAAATAAGACCATGG
13615428 ATGGGAGACG
Statistics
Matches: 128, Mismatches: 17, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
182 8 0.06
183 120 0.94
ACGTcount: A:0.42, C:0.14, G:0.23, T:0.20
Consensus pattern (183 bp):
AAGACCATGGTTGAAAGATACCATGGCAACATGACAGGAAATGAATAAGACCATGGTTGAAAGAT
ACCATGGCAACATGACATGAAAAGAATAAGACCATAGTTGAAAGACACCATGGCAACATGACGGA
AATAAATAAGACCATGGTTGAAAGATACCATGGCAATGTAACATGAAATGAAC
Found at i:13625202 original size:42 final size:42
Alignment explanation
Indices: 13625143--13625235 Score: 159
Period size: 42 Copynumber: 2.2 Consensus size: 42
13625133 GTCACGGGTA
*
13625143 GCCGTGTGTGACACACGATCAGCCCCATGAGCGTGTTACATG
1 GCCGTGTGTGACACACGATCAACCCCATGAGCGTGTTACATG
* *
13625185 GCCGTGTGTGACACACGATCAACCCTATGAGTGTGTTACATG
1 GCCGTGTGTGACACACGATCAACCCCATGAGCGTGTTACATG
13625227 GCCGTGTGT
1 GCCGTGTGT
13625236 CCCTTGCATG
Statistics
Matches: 48, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
42 48 1.00
ACGTcount: A:0.20, C:0.26, G:0.29, T:0.25
Consensus pattern (42 bp):
GCCGTGTGTGACACACGATCAACCCCATGAGCGTGTTACATG
Found at i:13628224 original size:52 final size:52
Alignment explanation
Indices: 13628141--13628291 Score: 160
Period size: 52 Copynumber: 2.9 Consensus size: 52
13628131 GACGGAAAAG
** *
13628141 ATGTGATATGTGCGCCCGTTTAAGACCATAGCTGGGCTATGGCATCGGTGCA
1 ATGTGATATGTGTTCCCGTATAAGACCATAGCTGGGCTATGGCATCGGTGCA
* * * * **
13628193 ATGTGATATGTGTTCCCGTATAATACTATAGCTGGGCCATGGCATTGGTGTG
1 ATGTGATATGTGTTCCCGTATAAGACCATAGCTGGGCTATGGCATCGGTGCA
** * *
13628245 ACATGATAATGTGATT-CCGTATAAGACCATATCTGGGATATGGCATC
1 ATGTGAT-ATGTG-TTCCCGTATAAGACCATAGCTGGGCTATGGCATC
13628292 TGTGTGTGAT
Statistics
Matches: 80, Mismatches: 17, Indels: 3
0.80 0.17 0.03
Matches are distributed among these distances:
52 48 0.60
53 30 0.38
54 2 0.03
ACGTcount: A:0.25, C:0.18, G:0.27, T:0.30
Consensus pattern (52 bp):
ATGTGATATGTGTTCCCGTATAAGACCATAGCTGGGCTATGGCATCGGTGCA
Found at i:13632403 original size:13 final size:13
Alignment explanation
Indices: 13632385--13632409 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
13632375 TTAACATGGT
13632385 ATCACGAAATTTC
1 ATCACGAAATTTC
13632398 ATCACGAAATTT
1 ATCACGAAATTT
13632410 TCACACAATC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.20, G:0.08, T:0.32
Consensus pattern (13 bp):
ATCACGAAATTTC
Found at i:13635151 original size:37 final size:37
Alignment explanation
Indices: 13635093--13635163 Score: 115
Period size: 37 Copynumber: 1.9 Consensus size: 37
13635083 GCTCAGATGA
*
13635093 AATCTCCACACGAAGTTATCGGGTCTTACCCGGACAT
1 AATCTCCACACGAAGTCATCGGGTCTTACCCGGACAT
* *
13635130 AATCTCTACACGTAGTCATCGGGTCTTACCCGGA
1 AATCTCCACACGAAGTCATCGGGTCTTACCCGGA
13635164 ATATATTTCC
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
37 31 1.00
ACGTcount: A:0.25, C:0.30, G:0.20, T:0.25
Consensus pattern (37 bp):
AATCTCCACACGAAGTCATCGGGTCTTACCCGGACAT
Found at i:13635436 original size:50 final size:48
Alignment explanation
Indices: 13635310--13636087 Score: 1243
Period size: 48 Copynumber: 15.9 Consensus size: 48
13635300 ACACATCGCC
*
13635310 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
*
13635358 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTC--A
* *
13635408 TATATATTTCACATT-GACCATTCGGCTTTACCACATATGCATATCTCA
1 TACATATTTCACATTAG-CCATTCGGCTTTACCACATATACATATCTCA
*
13635456 TACATATTTCACATTAGCCATTTGGCTTTACCACATATACATATCTCATA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTC--A
* *
13635506 TATATATTTCACATTAACCATTCGGCTTTACCACATATACATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
*
13635554 TATATATATATCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
1 TACATAT-T-TCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
*
13635604 TACATATTTCACATTAACCATTCGGCTTTACCACATATACATATCTCATA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTC--A
*
13635654 TATATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
*
13635702 TACATATTTCACATTAGCCATTCGGCTTTACCACATACACATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
*
13635750 TACATATTTCACATTAGCCATTCGGCTTTACCACATACACATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
*
13635798 TACATATTTCACATTAGCCATTCGGTTTTACCACATATACATATCTCATA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTC--A
* *
13635848 TATATATTTCACATTAACCATTCGGCTTTACCACATATACATATCTCATA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTC--A
*
13635898 TATATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTC--A
* *
13635948 TATATATTTCACATTAGCCATTCGGCTTTATCACATATACATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
*
13635996 TACATATTTCATATTAGCCATTCGGCTTTACCACATATACATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
13636044 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATAT
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATAT
13636088 ATTTATCTTG
Statistics
Matches: 691, Mismatches: 27, Indels: 24
0.93 0.04 0.03
Matches are distributed among these distances:
48 365 0.53
49 4 0.01
50 322 0.47
ACGTcount: A:0.32, C:0.26, G:0.06, T:0.37
Consensus pattern (48 bp):
TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
Found at i:13635463 original size:98 final size:96
Alignment explanation
Indices: 13635310--13636087 Score: 1243
Period size: 98 Copynumber: 8.0 Consensus size: 96
13635300 ACACATCGCC
* *
13635310 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACACTAG
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAG
13635375 CCATTCGGCTTTACCACATATACATATCTCATA
66 CCATTCGGCTTTACCACATATACATATCTC--A
* *
13635408 TATATATTTCACATT-GACCATTCGGCTTTACCACATATGCATATCTCATACATATTTCACATTA
1 TACATATTTCACATTAG-CCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTA
*
13635472 GCCATTTGGCTTTACCACATATACATATCTCATA
65 GCCATTCGGCTTTACCACATATACATATCTC--A
* * *
13635506 TATATATTTCACATTAACCATTCGGCTTTACCACATATACATATCTCATATATATATATCACATT
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATAT-T-TCACATT
13635571 AGCCATTCGGCTTTACCACATATACATATCTCA
64 AGCCATTCGGCTTTACCACATATACATATCTCA
* *
13635604 TACATATTTCACATTAACCATTCGGCTTTACCACATATACATATCTCATATATATATTTCACATT
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTC--ATACATATTTCACATT
13635669 AGCCATTCGGCTTTACCACATATACATATCTCA
64 AGCCATTCGGCTTTACCACATATACATATCTCA
*
13635702 TACATATTTCACATTAGCCATTCGGCTTTACCACATACACATATCTCATACATATTTCACATTAG
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAG
*
13635767 CCATTCGGCTTTACCACATACACATATCTCA
66 CCATTCGGCTTTACCACATATACATATCTCA
* *
13635798 TACATATTTCACATTAGCCATTCGGTTTTACCACATATACATATCTCATATATATATTTCACATT
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTC--ATACATATTTCACATT
*
13635863 AACCATTCGGCTTTACCACATATACATATCTCATA
64 AGCCATTCGGCTTTACCACATATACATATCTC--A
* *
13635898 TATATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATATATTTCACATT
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTC--ATACATATTTCACATT
*
13635963 AGCCATTCGGCTTTATCACATATACATATCTCA
64 AGCCATTCGGCTTTACCACATATACATATCTCA
*
13635996 TACATATTTCATATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAG
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAG
13636061 CCATTCGGCTTTACCACATATACATAT
66 CCATTCGGCTTTACCACATATACATAT
13636088 ATTTATCTTG
Statistics
Matches: 643, Mismatches: 27, Indels: 22
0.93 0.04 0.03
Matches are distributed among these distances:
96 135 0.21
97 1 0.00
98 365 0.57
99 2 0.00
100 140 0.22
ACGTcount: A:0.32, C:0.26, G:0.06, T:0.37
Consensus pattern (96 bp):
TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAG
CCATTCGGCTTTACCACATATACATATCTCA
Found at i:13656848 original size:25 final size:25
Alignment explanation
Indices: 13656803--13656873 Score: 106
Period size: 25 Copynumber: 2.8 Consensus size: 25
13656793 GAGGAAGTGC
* *
13656803 AAAAGGGCTTTTGCCCTAGTTTACCG
1 AAAAGGGC-TTTGCCCCAGTTTACCA
*
13656829 AAAAGGGCTTTGCCCCAGTTTATCA
1 AAAAGGGCTTTGCCCCAGTTTACCA
13656854 AAAAGGGCTTTGCCCCAGTT
1 AAAAGGGCTTTGCCCCAGTT
13656874 ATTAAAAGAG
Statistics
Matches: 42, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
25 34 0.81
26 8 0.19
ACGTcount: A:0.25, C:0.24, G:0.23, T:0.28
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAGTTTACCA
Done.