Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A06
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 115140250
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2234201 characters in sequence are not A, C, G, or T
File 49 of 345
Found at i:14639105 original size:26 final size:26
Alignment explanation
Indices: 14639041--14639113 Score: 85
Period size: 26 Copynumber: 2.8 Consensus size: 26
14639031 CATTTTCTCG
*
14639041 AAATTTTACTAAGGG-CAAAATCATCA
1 AAATTTTACT-AGGGATAAAATCATCA
* *
14639067 AAATTTTACTAGGGGTAAAATCATTA
1 AAATTTTACTAGGGATAAAATCATCA
**
14639093 AAATTTTGTTAGGGATAAAAT
1 AAATTTTACTAGGGATAAAAT
14639114 AGGAATGAGA
Statistics
Matches: 41, Mismatches: 5, Indels: 2
0.85 0.10 0.04
Matches are distributed among these distances:
25 4 0.10
26 37 0.90
ACGTcount: A:0.44, C:0.08, G:0.15, T:0.33
Consensus pattern (26 bp):
AAATTTTACTAGGGATAAAATCATCA
Found at i:14650058 original size:15 final size:16
Alignment explanation
Indices: 14650035--14650065 Score: 55
Period size: 15 Copynumber: 2.0 Consensus size: 16
14650025 ACGTATTTAA
14650035 TTAATTTTTTTAAAAT
1 TTAATTTTTTTAAAAT
14650051 TTAA-TTTTTTAAAAT
1 TTAATTTTTTTAAAAT
14650066 ATTTTTACAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 11 0.73
16 4 0.27
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (16 bp):
TTAATTTTTTTAAAAT
Found at i:14653228 original size:26 final size:25
Alignment explanation
Indices: 14653158--14653228 Score: 65
Period size: 26 Copynumber: 2.9 Consensus size: 25
14653148 GATTAAAAAT
* *
14653158 AAATAAA-AA-ATTTAAATATATTA
1 AAATAAATAATATTTAAATTTATGA
* **
14653181 AAATAAATAGTATTTATCTTTATGA
1 AAATAAATAATATTTAAATTTATGA
*
14653206 CAATTAAATAATATTTAAATTTA
1 -AAATAAATAATATTTAAATTTA
14653229 AAATAATTTT
Statistics
Matches: 36, Mismatches: 9, Indels: 3
0.75 0.19 0.06
Matches are distributed among these distances:
23 7 0.19
24 1 0.03
25 10 0.28
26 18 0.50
ACGTcount: A:0.54, C:0.03, G:0.03, T:0.41
Consensus pattern (25 bp):
AAATAAATAATATTTAAATTTATGA
Found at i:14661653 original size:41 final size:40
Alignment explanation
Indices: 14661592--14661677 Score: 100
Period size: 41 Copynumber: 2.1 Consensus size: 40
14661582 TATAATCACT
* *
14661592 TTTTATTATATTTTTAATTTGTGTATTGTTTTAAGAATTG
1 TTTTAGTATATTTTTAATTTGTGTATTATTTTAAGAATTG
* * * * *
14661632 TTTTAGTATCATTTTTTATTTGTTTCTTATTTTAATATTTG
1 TTTTAGTAT-ATTTTTAATTTGTGTATTATTTTAAGAATTG
14661673 TTTTA
1 TTTTA
14661678 AATGTATTTG
Statistics
Matches: 38, Mismatches: 7, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
40 8 0.21
41 30 0.79
ACGTcount: A:0.22, C:0.02, G:0.09, T:0.66
Consensus pattern (40 bp):
TTTTAGTATATTTTTAATTTGTGTATTATTTTAAGAATTG
Found at i:14669228 original size:43 final size:41
Alignment explanation
Indices: 14669161--14669312 Score: 173
Period size: 42 Copynumber: 3.6 Consensus size: 41
14669151 TTATGTAAAA
*
14669161 AAAGCCGCTATAGAACATGACCTTTAGTGACGCTTTTTCTAC
1 AAAGCTGCTATAGAACATGACCTTTAGTGACGC-TTTTCTAC
* * *
14669203 AAACGCTGCTATAGAACATGACCTTTAATGGCGCTTTTCCAC
1 AAA-GCTGCTATAGAACATGACCTTTAGTGACGCTTTTCTAC
* * *
14669245 AAATG-TCACTATAGAATA-GACCTTTAGCGACGCTTTTCTCAC
1 AAA-GCT-GCTATAGAACATGACCTTTAGTGACGCTTTTCT-AC
*
14669287 AAAGCTGCTAAAGAACATGACCTTTA
1 AAAGCTGCTATAGAACATGACCTTTA
14669313 AAAAAATATT
Statistics
Matches: 91, Mismatches: 14, Indels: 10
0.79 0.12 0.09
Matches are distributed among these distances:
41 27 0.30
42 37 0.41
43 27 0.30
ACGTcount: A:0.32, C:0.24, G:0.16, T:0.29
Consensus pattern (41 bp):
AAAGCTGCTATAGAACATGACCTTTAGTGACGCTTTTCTAC
Found at i:14669571 original size:12 final size:12
Alignment explanation
Indices: 14669556--14669618 Score: 54
Period size: 12 Copynumber: 5.1 Consensus size: 12
14669546 CAAGTTATCT
*
14669556 TAAATATTAAAA
1 TAAAAATTAAAA
*
14669568 TAAAAATAAAAA
1 TAAAAATTAAAA
*
14669580 TAAAAATTTAGAA
1 TAAAAA-TTAAAA
* *
14669593 TCAAAACTAAAA
1 TAAAAATTAAAA
*
14669605 TAAATAATAAAAA
1 TAAA-AATTAAAA
14669618 T
1 T
14669619 TAGATTAAAT
Statistics
Matches: 39, Mismatches: 10, Indels: 3
0.75 0.19 0.06
Matches are distributed among these distances:
12 23 0.59
13 16 0.41
ACGTcount: A:0.70, C:0.03, G:0.02, T:0.25
Consensus pattern (12 bp):
TAAAAATTAAAA
Found at i:14685054 original size:21 final size:22
Alignment explanation
Indices: 14685030--14685070 Score: 66
Period size: 21 Copynumber: 1.9 Consensus size: 22
14685020 GAAAGAAGAG
*
14685030 AAGGAAAAA-AGAACAAAAATA
1 AAGGAAAAATAAAACAAAAATA
14685051 AAGGAAAAATAAAACAAAAA
1 AAGGAAAAATAAAACAAAAA
14685071 GGGAAAATGT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 9 0.50
22 9 0.50
ACGTcount: A:0.78, C:0.05, G:0.12, T:0.05
Consensus pattern (22 bp):
AAGGAAAAATAAAACAAAAATA
Found at i:14685059 original size:22 final size:21
Alignment explanation
Indices: 14685030--14685070 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 21
14685020 GAAAGAAGAG
14685030 AAGGAAAA-AAGAACAAAAATA
1 AAGGAAAATAA-AACAAAAATA
14685051 AAGGAAAAATAAAACAAAAA
1 AAGG-AAAATAAAACAAAAA
14685071 GGGAAAATGT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
21 4 0.22
22 12 0.67
23 2 0.11
ACGTcount: A:0.78, C:0.05, G:0.12, T:0.05
Consensus pattern (21 bp):
AAGGAAAATAAAACAAAAATA
Found at i:14696612 original size:16 final size:15
Alignment explanation
Indices: 14696591--14696632 Score: 50
Period size: 15 Copynumber: 2.7 Consensus size: 15
14696581 AGTCCATTTA
14696591 TTTTATTTCTTTTTCT
1 TTTTATTTCTTTTT-T
14696607 TTTTATTT-TTTTTT
1 TTTTATTTCTTTTTT
*
14696621 TATTTTTTTCTT
1 T-TTTATTTCTT
14696633 AAGACTTATG
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
14 2 0.09
15 11 0.48
16 10 0.43
ACGTcount: A:0.07, C:0.07, G:0.00, T:0.86
Consensus pattern (15 bp):
TTTTATTTCTTTTTT
Found at i:14696620 original size:11 final size:11
Alignment explanation
Indices: 14696587--14696629 Score: 52
Period size: 11 Copynumber: 4.0 Consensus size: 11
14696577 TTTGAGTCCA
*
14696587 TTTATTTTATT
1 TTTATTTTTTT
* *
14696598 TCT-TTTTCTT
1 TTTATTTTTTT
14696608 TTTATTTTTTT
1 TTTATTTTTTT
14696619 TTTATTTTTTT
1 TTTATTTTTTT
14696630 CTTAAGACTT
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
10 8 0.30
11 19 0.70
ACGTcount: A:0.09, C:0.05, G:0.00, T:0.86
Consensus pattern (11 bp):
TTTATTTTTTT
Found at i:14697512 original size:15 final size:15
Alignment explanation
Indices: 14697492--14697520 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
14697482 TAAGAATTTT
14697492 TCCCTTTTTATTGAC
1 TCCCTTTTTATTGAC
14697507 TCCCTTTTTATTGA
1 TCCCTTTTTATTGA
14697521 GATTTGATTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.14, C:0.24, G:0.07, T:0.55
Consensus pattern (15 bp):
TCCCTTTTTATTGAC
Found at i:14720195 original size:17 final size:16
Alignment explanation
Indices: 14720173--14720204 Score: 55
Period size: 16 Copynumber: 1.9 Consensus size: 16
14720163 TCCATCATTT
14720173 TTTTACTTTTTATTTTA
1 TTTTAC-TTTTATTTTA
14720190 TTTTACTTTTATTTT
1 TTTTACTTTTATTTT
14720205 TAATTTTCTC
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 9 0.60
17 6 0.40
ACGTcount: A:0.16, C:0.06, G:0.00, T:0.78
Consensus pattern (16 bp):
TTTTACTTTTATTTTA
Found at i:14720205 original size:17 final size:19
Alignment explanation
Indices: 14720173--14720224 Score: 67
Period size: 17 Copynumber: 2.9 Consensus size: 19
14720163 TCCATCATTT
14720173 TTTTACTTTT-TATTTT-A
1 TTTTACTTTTATATTTTAA
14720190 TTTTACTTTTAT-TTTTAA
1 TTTTACTTTTATATTTTAA
14720208 TTTT-CTCTTTATATTTT
1 TTTTACT-TTTATATTTT
14720225 TGTGTATTAT
Statistics
Matches: 31, Mismatches: 0, Indels: 6
0.84 0.00 0.16
Matches are distributed among these distances:
17 16 0.52
18 11 0.35
19 4 0.13
ACGTcount: A:0.17, C:0.08, G:0.00, T:0.75
Consensus pattern (19 bp):
TTTTACTTTTATATTTTAA
Found at i:14731703 original size:19 final size:20
Alignment explanation
Indices: 14731666--14731703 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
14731656 CCTTTAAAAT
14731666 AATAAGATTATTAACAATAA
1 AATAAGATTATTAACAATAA
14731686 AATAAG-TT-TTATACAATA
1 AATAAGATTATTA-ACAATA
14731704 TCCAAACAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
18 3 0.18
19 8 0.47
20 6 0.35
ACGTcount: A:0.55, C:0.05, G:0.05, T:0.34
Consensus pattern (20 bp):
AATAAGATTATTAACAATAA
Found at i:14731737 original size:22 final size:22
Alignment explanation
Indices: 14731712--14731754 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
14731702 TATCCAAACA
14731712 ATAACAATAAAATAGTAGCAAC
1 ATAACAATAAAATAGTAGCAAC
* * *
14731734 ATAATAGTAAAATGGTAGCAA
1 ATAACAATAAAATAGTAGCAA
14731755 AATAGAGAGA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.56, C:0.09, G:0.14, T:0.21
Consensus pattern (22 bp):
ATAACAATAAAATAGTAGCAAC
Found at i:14731767 original size:22 final size:22
Alignment explanation
Indices: 14731719--14731767 Score: 55
Period size: 22 Copynumber: 2.2 Consensus size: 22
14731709 ACAATAACAA
* *
14731719 TAAAATAGTAGCAACATAATAG
1 TAAAATAGTAGCAAAATAAGAG
*
14731741 TAAAATGGTAGCAAAATAGAGAG
1 TAAAATAGTAGCAAAATA-AGAG
14731764 -AAAA
1 TAAAA
14731768 CAAGAAAATA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
22 20 0.87
23 3 0.13
ACGTcount: A:0.57, C:0.06, G:0.18, T:0.18
Consensus pattern (22 bp):
TAAAATAGTAGCAAAATAAGAG
Found at i:14735608 original size:29 final size:30
Alignment explanation
Indices: 14735573--14735822 Score: 161
Period size: 30 Copynumber: 8.4 Consensus size: 30
14735563 TCATCGACAA
14735573 ATGAAAAGGGATAGTTTCGGCTATCGAA-T
1 ATGAAAAGGGATAGTTTCGGCTATCGAACT
*
14735602 ACGAAAAGGGATAGCTTT-GGCTATCG-ACT
1 ATGAAAAGGGATAG-TTTCGGCTATCGAACT
* ** *
14735631 ATGAAAAGGGATGGTGAC-GATCATCGAACT
1 ATGAAAAGGGATAGTTTCGGCT-ATCGAACT
* * *
14735661 ATGAAAAAGGATGGCTTCGGCTATCGAACT
1 ATGAAAAGGGATAGTTTCGGCTATCGAACT
* * * * *
14735691 ATGAAAAGGGATGGCTTCAGCTTTC-AGATT
1 ATGAAAAGGGATAGTTTCGGCTATCGA-ACT
* ** * * *
14735721 ATGAAAAGGGATGGTGACGACCATC-AACA
1 ATGAAAAGGGATAGTTTCGGCTATCGAACT
* ** ** * * *
14735750 ATGAAAAGGGATGGTGACAACCATCAAATT
1 ATGAAAAGGGATAGTTTCGGCTATCGAACT
* * *
14735780 ATGAAAAGGAATAGCTTCGGTTATCGAACT
1 ATGAAAAGGGATAGTTTCGGCTATCGAACT
14735810 ATGAAAAGGGATA
1 ATGAAAAGGGATA
14735823 ACTTCTGTTA
Statistics
Matches: 174, Mismatches: 39, Indels: 15
0.76 0.17 0.07
Matches are distributed among these distances:
28 4 0.02
29 64 0.37
30 104 0.60
31 2 0.01
ACGTcount: A:0.37, C:0.14, G:0.27, T:0.23
Consensus pattern (30 bp):
ATGAAAAGGGATAGTTTCGGCTATCGAACT
Found at i:14735783 original size:89 final size:89
Alignment explanation
Indices: 14735604--14735821 Score: 242
Period size: 89 Copynumber: 2.4 Consensus size: 89
14735594 TATCGAATAC
** * *
14735604 GAAAAGGGATAGCTTTGGCTATCGACTATGAAAAGGGATGGTGACGATCATCGAACTATGAAAAA
1 GAAAAGGGATAGCTTCAGCTATCGACTATGAAAAGGGATGGTGACGACCATCGAACAATGAAAAA
* ** * *
14735669 GGATGGCTTCGGCTATCGAACTAT
66 GGATGGCTACAACCATCAAACTAT
* * *
14735693 GAAAAGGGATGGCTTCAGCTTTCAGATTATGAAAAGGGATGGTGACGACCATC-AACAATGAAAA
1 GAAAAGGGATAGCTTCAGCTATC-GACTATGAAAAGGGATGGTGACGACCATCGAACAATGAAAA
* *
14735757 GGGATGG-TGACAACCATCAAATTAT
65 AGGATGGCT-ACAACCATCAAACTAT
* * *
14735782 GAAAAGGAATAGCTTCGGTTATCGAACTATGAAAAGGGAT
1 GAAAAGGGATAGCTTCAGCTATCG-ACTATGAAAAGGGAT
14735822 AACTTCTGTT
Statistics
Matches: 106, Mismatches: 20, Indels: 6
0.80 0.15 0.05
Matches are distributed among these distances:
88 2 0.02
89 77 0.73
90 27 0.25
ACGTcount: A:0.37, C:0.14, G:0.27, T:0.22
Consensus pattern (89 bp):
GAAAAGGGATAGCTTCAGCTATCGACTATGAAAAGGGATGGTGACGACCATCGAACAATGAAAAA
GGATGGCTACAACCATCAAACTAT
Found at i:14735833 original size:30 final size:30
Alignment explanation
Indices: 14735779--14735852 Score: 85
Period size: 30 Copynumber: 2.4 Consensus size: 30
14735769 ACCATCAAAT
* *
14735779 TATGAAAAGGAATAGCTTCGGTTATCGAAC
1 TATGAAAAGGGATAACTTCGGTTATCGAAC
* * *
14735809 TATGAAAAGGGATAACTTCTGTTATTGAAT
1 TATGAAAAGGGATAACTTCGGTTATCGAAC
*
14735839 TACGAAAAAGGGAT
1 TATG-AAAAGGGAT
14735853 GGGTTAACCA
Statistics
Matches: 37, Mismatches: 6, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
30 28 0.76
31 9 0.24
ACGTcount: A:0.39, C:0.09, G:0.23, T:0.28
Consensus pattern (30 bp):
TATGAAAAGGGATAACTTCGGTTATCGAAC
Found at i:14735846 original size:119 final size:120
Alignment explanation
Indices: 14735631--14735854 Score: 301
Period size: 119 Copynumber: 1.9 Consensus size: 120
14735621 GCTATCGACT
* * * *
14735631 ATGAAAAGGGATGGTGACGATCATCGAACTATGAAAAAGGATGGCTTCGGCTATCGAACTATGAA
1 ATGAAAAGGGATGGTGACAACCATCAAACTATGAAAAAGGATAGCTTCGGCTATCGAACTATGAA
** *
14735696 AAGGGATGGCTTCAGCTTTCAGATTATG-AAAAGGGATGGTGACGACCATCAACA
66 AAGGGATAACTTCAGCTTTCAGATTACGAAAAAGGGATGGTGACGACCATCAACA
* *
14735750 ATGAAAAGGGATGGTGACAACCATCAAATTATG-AAAAGGAATAGCTTCGGTTATCGAACTATGA
1 ATGAAAAGGGATGGTGACAACCATCAAACTATGAAAAAGG-ATAGCTTCGGCTATCGAACTATGA
* * *
14735814 AAAGGGATAACTTCTGTTATTGA-ATTACGAAAAAGGGATGG
65 AAAGGGATAACTTCAGCT-TTCAGATTACGAAAAAGGGATGG
14735855 GTTAACCATC
Statistics
Matches: 90, Mismatches: 12, Indels: 5
0.84 0.11 0.05
Matches are distributed among these distances:
118 6 0.07
119 70 0.78
120 14 0.16
ACGTcount: A:0.38, C:0.13, G:0.26, T:0.23
Consensus pattern (120 bp):
ATGAAAAGGGATGGTGACAACCATCAAACTATGAAAAAGGATAGCTTCGGCTATCGAACTATGAA
AAGGGATAACTTCAGCTTTCAGATTACGAAAAAGGGATGGTGACGACCATCAACA
Found at i:14737929 original size:18 final size:18
Alignment explanation
Indices: 14737906--14737940 Score: 70
Period size: 18 Copynumber: 1.9 Consensus size: 18
14737896 ATTGTTTGTA
14737906 CTCTCTATTATCATTTTG
1 CTCTCTATTATCATTTTG
14737924 CTCTCTATTATCATTTT
1 CTCTCTATTATCATTTT
14737941 AGTTTCAATA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.17, C:0.23, G:0.03, T:0.57
Consensus pattern (18 bp):
CTCTCTATTATCATTTTG
Found at i:14741028 original size:6 final size:6
Alignment explanation
Indices: 14740980--14741013 Score: 59
Period size: 6 Copynumber: 5.5 Consensus size: 6
14740970 CAACAGAATC
14740980 TTCTTT TTCTTTT TTCTTT TTCTTT TTCTTT TTC
1 TTCTTT TTC-TTT TTCTTT TTCTTT TTCTTT TTC
14741014 AGCAATTTCT
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
6 21 0.78
7 6 0.22
ACGTcount: A:0.00, C:0.18, G:0.00, T:0.82
Consensus pattern (6 bp):
TTCTTT
Found at i:14748375 original size:21 final size:21
Alignment explanation
Indices: 14748324--14748383 Score: 63
Period size: 21 Copynumber: 3.0 Consensus size: 21
14748314 TATTTGCCCA
14748324 TTGTACTTTGT-ATTGAGTGG
1 TTGTACTTTGTAATTGAGTGG
* * *
14748344 TTTTACATTGTAATTG-GTTTG
1 TTGTACTTTGTAATTGAG-TGG
14748365 TTGTACTTTGT-ATTGAGTG
1 TTGTACTTTGTAATTGAGTG
14748384 ATTCTACACT
Statistics
Matches: 31, Mismatches: 6, Indels: 6
0.72 0.14 0.14
Matches are distributed among these distances:
20 15 0.48
21 16 0.52
ACGTcount: A:0.17, C:0.05, G:0.25, T:0.53
Consensus pattern (21 bp):
TTGTACTTTGTAATTGAGTGG
Found at i:14748402 original size:41 final size:41
Alignment explanation
Indices: 14748324--14748403 Score: 115
Period size: 41 Copynumber: 2.0 Consensus size: 41
14748314 TATTTGCCCA
* * * *
14748324 TTGTACTTTGTATTGAGTGGTTTTACATTGTAATTGGTTTG
1 TTGTACTTTGTATTGAGTGATTCTACACTATAATTGGTTTG
*
14748365 TTGTACTTTGTATTGAGTGATTCTACACTATAGTTGGTT
1 TTGTACTTTGTATTGAGTGATTCTACACTATAATTGGTT
14748404 AAACATACAT
Statistics
Matches: 34, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
41 34 1.00
ACGTcount: A:0.19, C:0.07, G:0.23, T:0.51
Consensus pattern (41 bp):
TTGTACTTTGTATTGAGTGATTCTACACTATAATTGGTTTG
Found at i:14754613 original size:46 final size:46
Alignment explanation
Indices: 14754560--14754685 Score: 182
Period size: 46 Copynumber: 2.7 Consensus size: 46
14754550 TGGTTGAGCA
* *
14754560 TCCGAACTCGTTGAGTTGAGTCCTAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* *
14754606 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* *
14754652 -CCTGAGCTCGTTGAGTTGAGTCCGATTTCACTTA
1 TCC-GAACTCGTTGAGTTGAGTCCGAGTTCACTTA
14754686 GGGGCGGGTT
Statistics
Matches: 73, Mismatches: 6, Indels: 2
0.90 0.07 0.02
Matches are distributed among these distances:
45 2 0.03
46 71 0.97
ACGTcount: A:0.21, C:0.21, G:0.26, T:0.32
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
Found at i:14757916 original size:13 final size:13
Alignment explanation
Indices: 14757898--14757923 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
14757888 TGCCGGTTGT
14757898 GTGTGAATTTGCG
1 GTGTGAATTTGCG
14757911 GTGTGAATTTGCG
1 GTGTGAATTTGCG
14757924 ACGTATTTCC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.15, C:0.08, G:0.38, T:0.38
Consensus pattern (13 bp):
GTGTGAATTTGCG
Found at i:14762136 original size:46 final size:46
Alignment explanation
Indices: 14762086--14762258 Score: 172
Period size: 46 Copynumber: 3.7 Consensus size: 46
14762076 TGGTTGAGCA
* * *
14762086 TCCGAACTCGTTTAGTTGAGTCTGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* * * * *
14762132 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--AATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--A--CG
* *
14762179 TTCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* **
14762225 CCCGAGTTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
14762259 GGGGCGGGTT
Statistics
Matches: 101, Mismatches: 19, Indels: 14
0.75 0.14 0.10
Matches are distributed among these distances:
43 5 0.05
45 3 0.03
46 58 0.57
47 28 0.28
48 3 0.03
50 4 0.04
ACGTcount: A:0.23, C:0.20, G:0.27, T:0.31
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
Found at i:14762247 original size:93 final size:93
Alignment explanation
Indices: 14762083--14762253 Score: 270
Period size: 93 Copynumber: 1.8 Consensus size: 93
14762073 GGATGGTTGA
* * * *
14762083 GCATCCGAACTCGTTTAGTTGAGTCTGAGTTCACTTATGGATGCAAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
14762148 TGAGTCCGAGTTCGTGAAATGTAACTAG
66 TGAGTCCGAGTTCGTGAAATGTAACTAG
* * **
14762176 GCATTCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGTTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
14762241 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
14762254 ACTTAGGGGC
Statistics
Matches: 70, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
93 70 1.00
ACGTcount: A:0.22, C:0.20, G:0.27, T:0.30
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAAATGTAACTAG
Found at i:14768092 original size:21 final size:22
Alignment explanation
Indices: 14768066--14768106 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
14768056 CACTTGAAAC
14768066 AGGGGC-ACACGCCCATGTGGG
1 AGGGGCAACACGCCCATGTGGG
*
14768087 AGGGGCAACACGCCCGTGTG
1 AGGGGCAACACGCCCATGTG
14768107 ACCAATTTGA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 6 0.33
22 12 0.67
ACGTcount: A:0.20, C:0.29, G:0.41, T:0.10
Consensus pattern (22 bp):
AGGGGCAACACGCCCATGTGGG
Found at i:14769381 original size:46 final size:45
Alignment explanation
Indices: 14769325--14769498 Score: 181
Period size: 46 Copynumber: 3.8 Consensus size: 45
14769315 ATCTCGTAGT
*
14769325 CGATGCATGTCCCAGACATGTCTTACACTAGCT-TACGTCACGAGGC
1 CGATGCATGTCCCAGACATGTCTTACACTAGCTCT-CGT-ACAAGGC
* * * *
14769371 CGATGCATGTCCCAGACATGTCTCACACTAGCTCTCGTTTCAATGT
1 CGATGCATGTCCCAGACATGTCTTACACTAGCTCTCG-TACAAGGC
* * *
14769417 TGATGCCATGTCCCAGACGTGGTCTTACACTAGCTCTCATA-ATATGGC
1 CGATG-CATGTCCCAGACAT-GTCTTACACTAGCTCTCGTACA-A-GGC
* *
14769465 TGATGCATATCCCAGACATGTCTTACACTAGCTC
1 CGATGCATGTCCCAGACATGTCTTACACTAGCTC
14769499 ACAATAGCCC
Statistics
Matches: 108, Mismatches: 14, Indels: 12
0.81 0.10 0.09
Matches are distributed among these distances:
46 57 0.53
47 29 0.27
48 22 0.20
ACGTcount: A:0.24, C:0.29, G:0.19, T:0.28
Consensus pattern (45 bp):
CGATGCATGTCCCAGACATGTCTTACACTAGCTCTCGTACAAGGC
Found at i:14769442 original size:94 final size:92
Alignment explanation
Indices: 14769326--14769498 Score: 233
Period size: 94 Copynumber: 1.9 Consensus size: 92
14769316 TCTCGTAGTC
* * *
14769326 GATGCATGTCCCAGACATGTCTTACACTAGCT-TACGTCACGA-GGCCGATGCATGTCCCAGACA
1 GATGCATGTCCCAGACATGTCTTACACTAGCTCT-CAT-AAGATGGCCGATGCATATCCCAGACA
14769389 TGTCTCACACTAGCTCTCGTTTCAATGTT
64 TGTCTCACACTAGCTCTCGTTTCAATGTT
* * *
14769418 GATGCCATGTCCCAGACGTGGTCTTACACTAGCTCTCATAATATGGCTGATGCATATCCCAGACA
1 GATG-CATGTCCCAGACAT-GTCTTACACTAGCTCTCATAAGATGGCCGATGCATATCCCAGACA
*
14769483 TGTCTTACACTAGCTC
64 TGTCTCACACTAGCTC
14769499 ACAATAGCCC
Statistics
Matches: 70, Mismatches: 7, Indels: 6
0.84 0.08 0.07
Matches are distributed among these distances:
92 4 0.06
93 15 0.21
94 50 0.71
95 1 0.01
ACGTcount: A:0.24, C:0.29, G:0.19, T:0.28
Consensus pattern (92 bp):
GATGCATGTCCCAGACATGTCTTACACTAGCTCTCATAAGATGGCCGATGCATATCCCAGACATG
TCTCACACTAGCTCTCGTTTCAATGTT
Found at i:14775495 original size:46 final size:45
Alignment explanation
Indices: 14775445--14775619 Score: 161
Period size: 46 Copynumber: 3.8 Consensus size: 45
14775435 ACATCTCGTA
* *
14775445 GCCGATGCATGTCCCAGACATGTCTTACACTAGCTTACATCACGAG
1 GCCGATGCATGTCCCAAACATGTCTTACACTAGCTT-CATAACGAG
* * * ** * *
14775491 GCCGATGCATGTCCTAGACATGTCTTACATTAGCTCTCATTTCAAT
1 GCCGATGCATGTCCCAAACATGTCTTACACTAGCT-TCATAACGAG
* * * *
14775537 GCCGATGCCATGTCCCAAACATGGTCTTACACTGGCTCCCATAATGTG
1 GCCGATG-CATGTCCCAAACAT-GTCTTACACTAGCT-TCATAACGAG
** *
14775585 GATGATGCATGTCTCAAACATGTCTTACACTAGCT
1 GCCGATGCATGTCCCAAACATGTCTTACACTAGCT
14775620 CACAATAGAC
Statistics
Matches: 105, Mismatches: 21, Indels: 6
0.80 0.16 0.05
Matches are distributed among these distances:
46 58 0.55
47 26 0.25
48 21 0.20
ACGTcount: A:0.25, C:0.28, G:0.18, T:0.29
Consensus pattern (45 bp):
GCCGATGCATGTCCCAAACATGTCTTACACTAGCTTCATAACGAG
Found at i:14775592 original size:94 final size:92
Alignment explanation
Indices: 14775445--14775620 Score: 219
Period size: 94 Copynumber: 1.9 Consensus size: 92
14775435 ACATCTCGTA
* * * * *
14775445 GCCGATGCATGTCCCAGACATGTCTTACACTAGCTTACATCACGAGGCCGATGCATGTC-CTAGA
1 GCCGATGCATGTCCCAAACATGTCTTACACTAGCTCACATAACGAGGACGATGCATGTCTC-AAA
*
14775509 CATGTCTTACATTAGCTCTCATTTCAAT
65 CATGTCTTACACTAGCTCTCATTTCAAT
* * * * *
14775537 GCCGATGCCATGTCCCAAACATGGTCTTACACTGGCTCCCATAATGTGGATGATGCATGTCTCAA
1 GCCGATG-CATGTCCCAAACAT-GTCTTACACTAGCTCACATAACGAGGACGATGCATGTCTCAA
14775602 ACATGTCTTACACTAGCTC
64 ACATGTCTTACACTAGCTC
14775621 ACAATAGACC
Statistics
Matches: 70, Mismatches: 11, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
92 7 0.10
93 13 0.19
94 49 0.70
95 1 0.01
ACGTcount: A:0.25, C:0.28, G:0.18, T:0.28
Consensus pattern (92 bp):
GCCGATGCATGTCCCAAACATGTCTTACACTAGCTCACATAACGAGGACGATGCATGTCTCAAAC
ATGTCTTACACTAGCTCTCATTTCAAT
Found at i:14780419 original size:29 final size:29
Alignment explanation
Indices: 14780387--14780543 Score: 269
Period size: 29 Copynumber: 5.4 Consensus size: 29
14780377 TGTGTGTACC
*
14780387 ATGTGAAAAAGGATAGCTTCGGCTATCGA
1 ATGTGAAAAGGGATAGCTTCGGCTATCGA
14780416 ATGTGAAAAGGGATAGCTTCGGCTATCGA
1 ATGTGAAAAGGGATAGCTTCGGCTATCGA
*
14780445 ATGTGAAAAGGGATAGCTTCGGCTATTGA
1 ATGTGAAAAGGGATAGCTTCGGCTATCGA
*
14780474 ATGTAAAAAGGGGATAGCTTCGGCTATCGA
1 ATGTGAAAA-GGGATAGCTTCGGCTATCGA
*
14780504 ATGTGAAAAGGGATAGCTTTGGCTATCGA
1 ATGTGAAAAGGGATAGCTTCGGCTATCGA
14780533 ATGTGAAAAGG
1 ATGTGAAAAGG
14780544 TTAGTTATAC
Statistics
Matches: 121, Mismatches: 6, Indels: 2
0.94 0.05 0.02
Matches are distributed among these distances:
29 94 0.78
30 27 0.22
ACGTcount: A:0.33, C:0.11, G:0.31, T:0.25
Consensus pattern (29 bp):
ATGTGAAAAGGGATAGCTTCGGCTATCGA
Found at i:14780512 original size:59 final size:59
Alignment explanation
Indices: 14780387--14780543 Score: 271
Period size: 59 Copynumber: 2.7 Consensus size: 59
14780377 TGTGTGTACC
*
14780387 ATGTGAAAAAGGATAGCTTCGGCTATCGAATGTGAAAA-GGGATAGCTTCGGCTATCGA
1 ATGTGAAAAGGGATAGCTTCGGCTATCGAATGTGAAAAGGGGATAGCTTCGGCTATCGA
* *
14780445 ATGTGAAAAGGGATAGCTTCGGCTATTGAATGTAAAAAGGGGATAGCTTCGGCTATCGA
1 ATGTGAAAAGGGATAGCTTCGGCTATCGAATGTGAAAAGGGGATAGCTTCGGCTATCGA
*
14780504 ATGTGAAAAGGGATAGCTTTGGCTATCGAATGTGAAAAGG
1 ATGTGAAAAGGGATAGCTTCGGCTATCGAATGTGAAAAGG
14780544 TTAGTTATAC
Statistics
Matches: 92, Mismatches: 6, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
58 35 0.38
59 57 0.62
ACGTcount: A:0.33, C:0.11, G:0.31, T:0.25
Consensus pattern (59 bp):
ATGTGAAAAGGGATAGCTTCGGCTATCGAATGTGAAAAGGGGATAGCTTCGGCTATCGA
Found at i:14780616 original size:32 final size:32
Alignment explanation
Indices: 14780536--14780758 Score: 245
Period size: 32 Copynumber: 6.9 Consensus size: 32
14780526 CTATCGAATG
* *
14780536 TGAAAAGGTTA-GTTATACTTTGTGTATACCACA
1 TGAAAAGGTTATG-TATACTTTGTGTGTA-CACT
*
14780569 TGAAAAGGGTT-TGTACACTTTGTGTGTACACT
1 TGAAAA-GGTTATGTATACTTTGTGTGTACACT
* *
14780601 TGAAAAGGTTATGTACACTTTGTGTGTACATT
1 TGAAAAGGTTATGTATACTTTGTGTGTACACT
*
14780633 TGAAAAGGTTATGTACACTTTGTGTGTACACT
1 TGAAAAGGTTATGTATACTTTGTGTGTACACT
** *
14780665 TGAAAAGGAAAGGTATACTTTGTGTGTACACT
1 TGAAAAGGTTATGTATACTTTGTGTGTACACT
** *
14780697 TGAAAAGGAAATGTATACTTTGTGTATAC-CAT
1 TGAAAAGGTTATGTATACTTTGTGTGTACAC-T
** *
14780729 ATGAAAAGGAAAGGTATACTTTGTGTGTAC
1 -TGAAAAGGTTATGTATACTTTGTGTGTAC
14780759 CACTCAGAAA
Statistics
Matches: 172, Mismatches: 13, Indels: 10
0.88 0.07 0.05
Matches are distributed among these distances:
31 5 0.03
32 116 0.67
33 46 0.27
34 5 0.03
ACGTcount: A:0.32, C:0.10, G:0.22, T:0.35
Consensus pattern (32 bp):
TGAAAAGGTTATGTATACTTTGTGTGTACACT
Found at i:14780655 original size:64 final size:64
Alignment explanation
Indices: 14780549--14780758 Score: 271
Period size: 64 Copynumber: 3.2 Consensus size: 64
14780539 AAAGGTTAGT
* * ** *
14780549 TATACTTTGTGTATACCACATGAAAAGGGTT-TGTACACTTTGTGTGTACACTTGAAAAGGTTAT
1 TATACTTTGTGTGTA-CACTTGAAAA-GGTTATGTACACTTTGTGTGTACACTTGAAAAGGAAAG
14780613 G
64 G
* *
14780614 TACACTTTGTGTGTACATTTGAAAAGGTTATGTACACTTTGTGTGTACACTTGAAAAGGAAAGG
1 TATACTTTGTGTGTACACTTGAAAAGGTTATGTACACTTTGTGTGTACACTTGAAAAGGAAAGG
** * *
14780678 TATACTTTGTGTGTACACTTGAAAAGGAAATGTATACTTTGTGTATAC-CATATGAAAAGGAAAG
1 TATACTTTGTGTGTACACTTGAAAAGGTTATGTACACTTTGTGTGTACAC-T-TGAAAAGGAAAG
14780742 G
64 G
14780743 TATACTTTGTGTGTAC
1 TATACTTTGTGTGTAC
14780759 CACTCAGAAA
Statistics
Matches: 129, Mismatches: 13, Indels: 6
0.87 0.09 0.04
Matches are distributed among these distances:
63 5 0.04
64 82 0.64
65 42 0.33
ACGTcount: A:0.31, C:0.11, G:0.22, T:0.36
Consensus pattern (64 bp):
TATACTTTGTGTGTACACTTGAAAAGGTTATGTACACTTTGTGTGTACACTTGAAAAGGAAAGG
Found at i:14780799 original size:65 final size:64
Alignment explanation
Indices: 14780592--14780808 Score: 163
Period size: 64 Copynumber: 3.4 Consensus size: 64
14780582 TACACTTTGT
* ** * * * * ** * * * *
14780592 GTGTACACTTGAAAAGGTTATGTACACTTTGTGTGTACATTTGAAAAGGTTATGTACACTTTGT
1 GTGTACATTTGAAAAGGAAAGGTATACTTTGTGTGTACACTAGAAAAGGAAACGTATACTTCGA
* * * * *
14780656 GTGTACACTTGAAAAGGAAAGGTATACTTTGTGTGTACACTTGAAAAGGAAATGTATACTTTGT
1 GTGTACATTTGAAAAGGAAAGGTATACTTTGTGTGTACACTAGAAAAGGAAACGTATACTTCGA
* *
14780720 GTATACCATATGAAAAGGAAAGGTATACTTTGTGTGTACCACTCAG-AAA-GAAACG-A-ACTCC
1 GTGTA-CATTTGAAAAGGAAAGGTATACTTTGTGTGTA-CACT-AGAAAAGGAAACGTATACT--
14780781 TCGA
61 TCGA
*
14780785 GTGTACAATTTGAAAAGAAAAGGT
1 GTGTAC-ATTTGAAAAGGAAAGGT
14780809 CCATCAGAAA
Statistics
Matches: 129, Mismatches: 18, Indels: 11
0.82 0.11 0.07
Matches are distributed among these distances:
63 3 0.02
64 62 0.48
65 56 0.43
66 7 0.05
67 1 0.01
ACGTcount: A:0.35, C:0.12, G:0.22, T:0.31
Consensus pattern (64 bp):
GTGTACATTTGAAAAGGAAAGGTATACTTTGTGTGTACACTAGAAAAGGAAACGTATACTTCGA
Found at i:14789037 original size:23 final size:23
Alignment explanation
Indices: 14789016--14789059 Score: 65
Period size: 24 Copynumber: 2.0 Consensus size: 23
14789006 GGATGAGCTT
14789016 TTATT-TTTT-CCAAACTTTAGC
1 TTATTATTTTCCCAAACTTTAGC
14789037 TTCATTATTTTCCCAAACTTTAG
1 TT-ATTATTTTCCCAAACTTTAG
14789060 AATTCAAATT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
21 2 0.10
22 3 0.15
23 4 0.20
24 11 0.55
ACGTcount: A:0.25, C:0.20, G:0.05, T:0.50
Consensus pattern (23 bp):
TTATTATTTTCCCAAACTTTAGC
Found at i:14806459 original size:4 final size:4
Alignment explanation
Indices: 14806450--14806487 Score: 76
Period size: 4 Copynumber: 9.5 Consensus size: 4
14806440 ACCTTTTAGT
14806450 TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TT
1 TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TT
14806488 GTACTTCCAA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 34 1.00
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (4 bp):
TTTA
Found at i:14806567 original size:5 final size:6
Alignment explanation
Indices: 14806550--14806574 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
14806540 AAAAAACATC
14806550 TATTTT TATTTT TATTTT TATTTT T
1 TATTTT TATTTT TATTTT TATTTT T
14806575 TGAATTACTA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.16, C:0.00, G:0.00, T:0.84
Consensus pattern (6 bp):
TATTTT
Found at i:14806942 original size:16 final size:18
Alignment explanation
Indices: 14806911--14806948 Score: 53
Period size: 16 Copynumber: 2.2 Consensus size: 18
14806901 TCAATTTCTA
14806911 AAAATAAAATCTTAAATC
1 AAAATAAAATCTTAAATC
*
14806929 AAAAT-AAA-CTTAAATT
1 AAAATAAAATCTTAAATC
14806945 AAAA
1 AAAA
14806949 ATTTATACAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
16 11 0.58
17 3 0.16
18 5 0.26
ACGTcount: A:0.66, C:0.08, G:0.00, T:0.26
Consensus pattern (18 bp):
AAAATAAAATCTTAAATC
Found at i:14807800 original size:38 final size:38
Alignment explanation
Indices: 14807758--14807832 Score: 132
Period size: 38 Copynumber: 2.0 Consensus size: 38
14807748 ACAATGGTGA
*
14807758 TGCTATAGATTAAAGTCGATTTTTGTCCAAGACTTTAG
1 TGCTATAGATTAAAGCCGATTTTTGTCCAAGACTTTAG
*
14807796 TGCTATAGATTAAAGCCGGTTTTTGTCCAAGACTTTA
1 TGCTATAGATTAAAGCCGATTTTTGTCCAAGACTTTA
14807833 TAAAAGACTT
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
38 35 1.00
ACGTcount: A:0.28, C:0.15, G:0.19, T:0.39
Consensus pattern (38 bp):
TGCTATAGATTAAAGCCGATTTTTGTCCAAGACTTTAG
Found at i:14816243 original size:574 final size:576
Alignment explanation
Indices: 14814658--14816505 Score: 2776
Period size: 580 Copynumber: 3.2 Consensus size: 576
14814648 GACCGTGTGT
* * * * *
14814658 ATATTCAAAGTTGGGTCAGACGACAGTGTCACAGGCCGTGTGCTAGACCATGTAACAATCTATTT
1 ATATTCAAAGTTGGGTCATACGACAGTGTCGCAGGCCATGTGCTAAACCGTGTAACAATCTATTT
* * *
14814723 TGGCTTACACGGTCATGTCGCAAGCCATGTACTAGGCCATGTGGATACT-TACCTATAATCAATA
66 TGGCTTACA--GTCATGTCGCAAGCCATGTGCTAGGCCGTGTGGATACTGCACCTATAATCAATA
*
14814787 ATTACACACGGCCATGCGTAGTGACCGTGTGTGGCACATGGCCGTGTGTACCCTTTTTGACCCCT
129 ATTACACACGGCCGTGCGTAGTGACCGTGTGTGGCACATGGCCGTGTGTACCCTTTTTGACCCCT
* * *
14814852 AAATCAAACAATGTCATGCATTATTCCTTGCACAACAAGACATGCCATATCTAGATCAATTCTTA
194 AAATCAAGCAATGTCATGCATTATTCCTTGTACAACAAGACATGCCATATCTAGATCAATTCCTA
*
14814917 GGTTCAAAAACACATTTAAATCATCAAATACATGCTAAAATTTCATTCATTTCACTCCTAACCAA
259 GGTTCAAAAACACATTTAAATCATCAAATACATGCTAAAATTTCATTCATTTCACGCCTAACCAA
* *
14814982 TATGCCATTCAAATGCACCATAATTAAAGATCATTCAATCACTAATTTAGCTAAGTAAGCACATG
324 TATGCCATTCAAATGCACCAGAATTAAAGATCATTCAATTACTAATTTAGCTAAGTAAGCACATG
*
14815047 ACATTAAACATCTATTCATGCTCAACCATCAACCAAAATAACCAAAGTACAAACATATTCAAAAC
389 ACATTAAACATCTATTCATGCTCAACCATCAACCAAATTAACCAAAGTACAAACATATTCAAAAC
* *
14815112 TTACCATTTTAAAGTATTACCACTTAGCTCTTGACCATTAAGAATCAATCCAACCAAAAACACTT
454 TTACCATTTCAAAGTATTA-CACTTAGCTCTTAACCATTAAGAATCAATCCAACCAAAAACACTT
* *
14815177 TAAACACATATTCAAAATCAAACATTTCACTAAGAACACCATTATAGTATAACATTTAC
518 TAAACACATATTCAAAACCAAACATTTCACTAGGAACACCATTATAGTATAACATTTAC
** * * * *
14815236 ATATTTGAAGTTGGGTCATATGATAGTGTTGCAGGCTATGTGCTAAACCGTGTAACAATCTATTT
1 ATATTCAAAGTTGGGTCATACGACAGTGTCGCAGGCCATGTGCTAAACCGTGTAACAATCTATTT
* * * * * * *
14815301 TGGCTCACACGGTCGTGTTGCAGGCCATGTGCTAGGCTGTATGGGTACTGCACC-AGTAATCAAT
66 TGGCTTACA--GTCATGTCGCAAGCCATGTGCTAGGCCGTGTGGATACTGCACCTA-TAATCAAT
* * * * *
14815365 AATTACACACGGCCGTGCGTAGTGACAAGTTTGTGGCACATAGCCTTGTGTACCCTGTTTGACCC
128 AATTACACACGGCCGTGCGTAGTGAC-CGTGTGTGGCACATGGCCGTGTGTACCCTTTTTGACCC
* * *
14815430 CTAAATCAAGTAATGTCATGCATTATTCCTTGTACAATAAGACATACCATATCTAGATCAATTCC
192 CTAAATCAAGCAATGTCATGCATTATTCCTTGTACAACAAGACATGCCATATCTAGATCAATTCC
* * * *
14815495 TAGGTTCAAGAACACATTTAAATCATCAAATACATGCTAAAATTTCATTCATTTCATGCTTAACG
257 TAGGTTCAAAAACACATTTAAATCATCAAATACATGCTAAAATTTCATTCATTTCACGCCTAACC
** * * * *
14815560 AATATGCCATTCAAATGCATTAGAATTAAAGATCATCCAATTACTAATCTAACTAAGGAAGCACA
322 AATATGCCATTCAAATGCACCAGAATTAAAGATCATTCAATTACTAATTTAGCTAAGTAAGCACA
14815625 TGACATTAAACATCTATTCATGCTCAACCATCAACCAAATTAACCAAAGTACAAACATATTCAAA
387 TGACATTAAACATCTATTCATGCTCAACCATCAACCAAATTAACCAAAGTACAAACATATTCAAA
* *
14815690 ACTCACCATTTCAAAGTATTACTACTTAGCTCTTAACCATTAAGAATCAATTCAACCAAAAACAC
452 ACTTACCATTTCAAAGTATTAC-ACTTAGCTCTTAACCATTAAGAATCAATCCAACCAAAAACAC
*
14815755 TTTAAACACATATTCAAAACCAAACATTTCACTAGGAACACCATTATAGTATAAAATTTAC
516 TTTAAACACATATTCAAAACCAAACATTTCACTAGGAACACCATTATAGTATAACATTTAC
* * * * * *
14815816 ATATTCAAAGTTAGGTCACACGACAATGTCGTAGGCTATGTGCTAAACCGTGTAACAATCTGTTT
1 ATATTCAAAGTTGGGTCATACGACAGTGTCGCAGGCCATGTGCTAAACCGTGTAACAATCTATTT
* * *
14815881 TGGCTTACA-T-A-GTCGCAAGCCATGTGTTAGGCTGTGTGGATACTGCACCTATAATAAATAAT
66 TGGCTTACAGTCATGTCGCAAGCCATGTGCTAGGCCGTGTGGATACTGCACCTATAATCAATAAT
* * *
14815943 TACAAACGGCCGTGCGTGGTGACCGTGTGTGGCACATGGCCGTGTGTACCTTTTTTGACCCCTAA
131 TACACACGGCCGTGCGTAGTGACCGTGTGTGGCACATGGCCGTGTGTACCCTTTTTGACCCCTAA
* *
14816008 ATTAAGCAATGCCATGCATTATTCCTTGTACAACAAGACATGCCATATCTAGATCAATTCCTAGG
196 ATCAAGCAATGTCATGCATTATTCCTTGTACAACAAGACATGCCATATCTAGATCAATTCCTAGG
*
14816073 TTCAAAAACACATTTAAATCATCAAATACATGCTAAAATTTCATTCATTTCACGCCTAACTAATA
261 TTCAAAAACACATTTAAATCATCAAATACATGCTAAAATTTCATTCATTTCACGCCTAACCAATA
* *
14816138 TGTCATTCAAATGCACCAGAATTAAAGATCATTCAATTACTAATTTAGCTAAGTAAGCATATGAC
326 TGCCATTCAAATGCACCAGAATTAAAGATCATTCAATTACTAATTTAGCTAAGTAAGCACATGAC
14816203 ATTAAACATCTATTCATGCTCAACCATCAACCAAATTAACCAAAGTAC---CATATTCAAAACTT
391 ATTAAACATCTATTCATGCTCAACCATCAACCAAATTAACCAAAGTACAAACATATTCAAAACTT
14816265 ACCATTTCAAAGTATTACAGCTTAGCTCTTAACCATTAAGAATCAATCCAACCAAAAACACTTTA
456 ACCATTTCAAAGTATTACA-CTTAGCTCTTAACCATTAAGAATCAATCCAACCAAAAACACTTTA
* * *
14816330 AACATATATTCAAAACTAGACATTTCACTAGGAACACCATTATAGTATAACATTTAC
520 AACACATATTCAAAACCAAACATTTCACTAGGAACACCATTATAGTATAACATTTAC
* ** * * *
14816387 ATATTCGAAGCCGGGTCATACGACAGTGTCGCAGGCCGTGTGCTAGACCGTGTAACAATCTGTTT
1 ATATTCAAAGTTGGGTCATACGACAGTGTCGCAGGCCATGTGCTAAACCGTGTAACAATCTATTT
* * * * *
14816452 TGGCTCAAACGGTCATGTCGCAGGCTATGTGTTAGGCCGTGTGGATACTGCACC
66 TGGCT--TACAGTCATGTCGCAAGCCATGTGCTAGGCCGTGTGGATACTGCACC
14816506 AATTTAATAC
Statistics
Matches: 1141, Mismatches: 118, Indels: 24
0.89 0.09 0.02
Matches are distributed among these distances:
570 1 0.00
571 188 0.16
573 2 0.00
574 263 0.23
575 65 0.06
576 36 0.03
577 1 0.00
578 95 0.08
579 37 0.03
580 453 0.40
ACGTcount: A:0.35, C:0.22, G:0.14, T:0.29
Consensus pattern (576 bp):
ATATTCAAAGTTGGGTCATACGACAGTGTCGCAGGCCATGTGCTAAACCGTGTAACAATCTATTT
TGGCTTACAGTCATGTCGCAAGCCATGTGCTAGGCCGTGTGGATACTGCACCTATAATCAATAAT
TACACACGGCCGTGCGTAGTGACCGTGTGTGGCACATGGCCGTGTGTACCCTTTTTGACCCCTAA
ATCAAGCAATGTCATGCATTATTCCTTGTACAACAAGACATGCCATATCTAGATCAATTCCTAGG
TTCAAAAACACATTTAAATCATCAAATACATGCTAAAATTTCATTCATTTCACGCCTAACCAATA
TGCCATTCAAATGCACCAGAATTAAAGATCATTCAATTACTAATTTAGCTAAGTAAGCACATGAC
ATTAAACATCTATTCATGCTCAACCATCAACCAAATTAACCAAAGTACAAACATATTCAAAACTT
ACCATTTCAAAGTATTACACTTAGCTCTTAACCATTAAGAATCAATCCAACCAAAAACACTTTAA
ACACATATTCAAAACCAAACATTTCACTAGGAACACCATTATAGTATAACATTTAC
Found at i:14824082 original size:21 final size:21
Alignment explanation
Indices: 14824053--14824111 Score: 57
Period size: 21 Copynumber: 2.8 Consensus size: 21
14824043 TAATCCCCAC
14824053 TAATATATTTTTATTAACCTAAT
1 TAAT-TATTTTTATTAA-CTAAT
* * *
14824076 T-ATTATTATAATTAATTAAT
1 TAATTATTTTTATTAACTAAT
*
14824096 TAATTAATTTTATTAA
1 TAATTATTTTTATTAA
14824112 TTTCTAATTT
Statistics
Matches: 29, Mismatches: 6, Indels: 4
0.74 0.15 0.10
Matches are distributed among these distances:
20 5 0.17
21 21 0.72
22 2 0.07
23 1 0.03
ACGTcount: A:0.42, C:0.03, G:0.00, T:0.54
Consensus pattern (21 bp):
TAATTATTTTTATTAACTAAT
Found at i:14828108 original size:576 final size:577
Alignment explanation
Indices: 14826087--14828399 Score: 3506
Period size: 580 Copynumber: 4.0 Consensus size: 577
14826077 GACCGTGTGT
* * * * * *
14826087 ATATTCAAAGTTGGGTCAGACGACAGTGTCACAGGCCGTGTGCTAGACCATGTAACAATCTATTT
1 ATATTCGAAGTTGGGTCATACGACAGTGTCGCAGGCCATGTGCTAAACCGTGTAACAATCTATTT
* * * *
14826152 TGGCTTACACGGTCATGTCGCAAGCCATGTACTAGGCCATGTGGATACT-TACCTATAATCAATA
66 TGGCTCACACGGTCATGTCGCAAGCCATGTGCTAGGCCGTGTGGATACTGCACCTATAATCAATA
* *
14826216 ATTACACACGGCCATACGTAGTGACCGTGTGTGGCACATGGCCGTGTGTACCCTTTTTGACCCCT
131 ATTACACACGGCCGTGCGTAGTGACCGTGTGTGGCACATGGCCGTGTGTACCCTTTTTGACCCCT
* * *
14826281 AAATCAAACAATGTCATGCATTATTCCTTGCACAACAAGACATGCCATATCTAGATCAATTCTTA
196 AAATCAAGCAATGCCATGCATTATTCCTTGCACAACAAGACATGCCATATCTAGATCAATTCCTA
*
14826346 GGTTCAAAAACACATTTAAATCATCAAATACATGCTAAAATTTCATTCATTTCACTCCTAACCAA
261 GGTTCAAAAACACATTTAAATCATCAAATACATGCTAAAATTTCATTCATTTCACGCCTAACCAA
* *
14826411 TATGCCATTCAAATGCACCATAATTAAAGATCATTCAATCACTAATTTAGCTAAGTAAGCACATG
326 TATGCCATTCAAATGCACCAGAATTAAAGATCATTCAATTACTAATTTAGCTAAGTAAGCACATG
*
14826476 ACATTAAACATCTATTCATGCTCAACCATCAACCAAAATAACCAAAGTACAAACATATTCAAAAC
391 ACATTAAACATCTATTCATGCTCAACCATCAACCAAATTAACCAAAGTAC--ACATATTCAAAAC
*
14826541 TTACCATTTTAAAGTATTACCACTTAGCTCTTGACCATTAAGAATCAATCCAACCAAAAACACTT
454 TTACCATTTCAAAGTATTACCACTTAGCTCTTGACCATTAAGAATCAATCCAACCAAAAACACTT
* * *
14826606 TAAACACACATTCAAAATCAAACATTTCACTAAGAACACCATTATAGTATAACATTTAC
519 TAAACACATATTCAAAACCAAACATTTCACTAGGAACACCATTATAGTATAACATTTAC
* * * * *
14826665 ATATTTGAAGTTGGGTCATATGATAGTGTTGCAGGCTATGTGCTAAACCGTGTAACAATCTATTT
1 ATATTCGAAGTTGGGTCATACGACAGTGTCGCAGGCCATGTGCTAAACCGTGTAACAATCTATTT
* * * * * * *
14826730 TGGCTCACACGGTCGTGTTGCAGGCCATGTGCTAGGCTGTATGGGTACTGCACCTGTAATCAATA
66 TGGCTCACACGGTCATGTCGCAAGCCATGTGCTAGGCCGTGTGGATACTGCACCTATAATCAATA
* * * * *
14826795 ATTACACACGGCCGTGCGTAGTGACAAGTTTGTGGCACATAGCCTTGTGTACCCTGTTTGACCCC
131 ATTACACACGGCCGTGCGTAGTGAC-CGTGTGTGGCACATGGCCGTGTGTACCCTTTTTGACCCC
* * * * *
14826860 TAAATCAAGTAATGTCATGCATTATTCCTTGTACAATAAGACATACCATATCTAGATCAATTCCT
195 TAAATCAAGCAATGCCATGCATTATTCCTTGCACAACAAGACATGCCATATCTAGATCAATTCCT
* * * *
14826925 AGGTTCAAGAACACATTTAAATCATCAAATACATGCTAAAATTTCATTCATTTCATGCTTAACGA
260 AGGTTCAAAAACACATTTAAATCATCAAATACATGCTAAAATTTCATTCATTTCACGCCTAACCA
** * * * *
14826990 ATATGCCATTCAAATGCATTAGAATTAAAGATCATCCAATTACTAATCTAACTAAGGAAGCACAT
325 ATATGCCATTCAAATGCACCAGAATTAAAGATCATTCAATTACTAATTTAGCTAAGTAAGCACAT
14827055 GACATTAAACATCTATTCATGCTCAACCATCAACCAAATTAACCAAAGTACAAACATATTCAAAA
390 GACATTAAACATCTATTCATGCTCAACCATCAACCAAATTAACCAAAGTAC--ACATATTCAAAA
* * *
14827120 CTCACCATTTCAAAGTATTACTACTTAGCTCTTGACCATTAAGAATCAATTCAACCAAAAACACT
453 CTTACCATTTCAAAGTATTACCACTTAGCTCTTGACCATTAAGAATCAATCCAACCAAAAACACT
*
14827185 TTAAACACATATTCAAAACCAAACATTTCACTAGGAACACCATTATAGTATAAAATTTAC
518 TTAAACACATATTCAAAACCAAACATTTCACTAGGAACACCATTATAGTATAACATTTAC
* * * * * * *
14827245 ATATTCAAAGTTAGGTCACACGACAATGTCGTAGGCTATGTGCTAAACCGTGTAACAATCTGTTT
1 ATATTCGAAGTTGGGTCATACGACAGTGTCGCAGGCCATGTGCTAAACCGTGTAACAATCTATTT
* * * *
14827310 TGGCTTACA---T-A-GTCGCAAGCCATGTGTTAGGCTGTGTGGATACTGCACCTATAATAAATA
66 TGGCTCACACGGTCATGTCGCAAGCCATGTGCTAGGCCGTGTGGATACTGCACCTATAATCAATA
* * *
14827370 ATTACAAACGGCCGTGCGTGGTGACCGTGTGTGGCACATGGCCGTGTGTACCTTTTTTGACCCCT
131 ATTACACACGGCCGTGCGTAGTGACCGTGTGTGGCACATGGCCGTGTGTACCCTTTTTGACCCCT
* *
14827435 AAATTAAGCAATGCCATGCATTATTCCTTGTACAACAAGACATGCCATATCTAGATCAATTCCTA
196 AAATCAAGCAATGCCATGCATTATTCCTTGCACAACAAGACATGCCATATCTAGATCAATTCCTA
*
14827500 GGTTCAAAAACACATTTAAATCATCAAATACATGCTAAAATTTCATTCATTTCACGCCTAACTAA
261 GGTTCAAAAACACATTTAAATCATCAAATACATGCTAAAATTTCATTCATTTCACGCCTAACCAA
* * *
14827565 TATGTCATTCAAGTGCACCAGAATTAAAGATCATTCAATTACTAATTTAGCTAAGTAAGCATATG
326 TATGCCATTCAAATGCACCAGAATTAAAGATCATTCAATTACTAATTTAGCTAAGTAAGCACATG
14827630 ACATTAAACATCTATTCATGCTCAACCATCAACCAAATTAACCAAAGTAC-CATATTCAAAACTT
391 ACATTAAACATCTATTCATGCTCAACCATCAACCAAATTAACCAAAGTACACATATTCAAAACTT
* *
14827694 ACCATTTCAAAGTATTACAACTTAGCTCTTAACCATTAAGAATCAATCCAACCAAAAACACTTTA
456 ACCATTTCAAAGTATTACCACTTAGCTCTTGACCATTAAGAATCAATCCAACCAAAAACACTTTA
* * *
14827759 AACATATATTCAAAACTAGACATTTCACTAGGAACACCATTATAGTATAACATTTAC
521 AACACATATTCAAAACCAAACATTTCACTAGGAACACCATTATAGTATAACATTTAC
** * * *
14827816 ATATTCGAAGCCGGGTCATACGACAGTGTCGCAGGCCGTGTGCTAGACCGTGTAACAATCTGTTT
1 ATATTCGAAGTTGGGTCATACGACAGTGTCGCAGGCCATGTGCTAAACCGTGTAACAATCTATTT
* * * *
14827881 TGGCTCACACGGTCATGTCGCAGGCTATGTGTTAGGCCGTGTGGATACTGCACCAATAATCAATA
66 TGGCTCACACGGTCATGTCGCAAGCCATGTGCTAGGCCGTGTGGATACTGCACCTATAATCAATA
* * * * *
14827946 ATTACACACGACCGTGCGTGGTGATCGTGTGTGGCACATGGTCGTGTGCACCCTTTTTGACCCCT
131 ATTACACACGGCCGTGCGTAGTGACCGTGTGTGGCACATGGCCGTGTGTACCCTTTTTGACCCCT
* *
14828011 AAATCAAGCAATGCCATGCATTATTCCTTGCACAACAAGACATGCCATATCTAGATTAGTTCCTA
196 AAATCAAGCAATGCCATGCATTATTCCTTGCACAACAAGACATGCCATATCTAGATCAATTCCTA
*
14828076 TGTTCAAAAACACATTTAAATCATCAAATACATGCTAAAATTTCATTCATTTCACGCCTAACCAA
261 GGTTCAAAAACACATTTAAATCATCAAATACATGCTAAAATTTCATTCATTTCACGCCTAACCAA
* * *
14828141 TATGCCATTCAAATGCACCATAATTAAAGATTATTCAATTGCTAATTTAGCTAAGTAAGCACATG
326 TATGCCATTCAAATGCACCAGAATTAAAGATCATTCAATTACTAATTTAGCTAAGTAAGCACATG
* *
14828206 ACATTAAACATCTATTCACGCTCAACCATCAACCAAATTAACTAAAGTACAAACATATTCAAAAC
391 ACATTAAACATCTATTCATGCTCAACCATCAACCAAATTAACCAAAGTAC--ACATATTCAAAAC
* * * *
14828271 TTAACATTTGAAAGTATTACCATTTAGCTCTTGACCAGTAAGAATCAATCCAACCAAAAACACTT
454 TTACCATTTCAAAGTATTACCACTTAGCTCTTGACCATTAAGAATCAATCCAACCAAAAACACTT
* *
14828336 TAAACACGTATTCAAAACCAAACATTTCATTAGGAACACCATTATAGTATAACATTTAC
519 TAAACACATATTCAAAACCAAACATTTCACTAGGAACACCATTATAGTATAACATTTAC
14828395 ATATT
1 ATATT
14828400 TACAACAAAA
Statistics
Matches: 1568, Mismatches: 157, Indels: 19
0.90 0.09 0.01
Matches are distributed among these distances:
571 191 0.12
574 262 0.17
575 66 0.04
576 334 0.21
577 1 0.00
578 94 0.06
579 166 0.11
580 454 0.29
ACGTcount: A:0.36, C:0.22, G:0.13, T:0.29
Consensus pattern (577 bp):
ATATTCGAAGTTGGGTCATACGACAGTGTCGCAGGCCATGTGCTAAACCGTGTAACAATCTATTT
TGGCTCACACGGTCATGTCGCAAGCCATGTGCTAGGCCGTGTGGATACTGCACCTATAATCAATA
ATTACACACGGCCGTGCGTAGTGACCGTGTGTGGCACATGGCCGTGTGTACCCTTTTTGACCCCT
AAATCAAGCAATGCCATGCATTATTCCTTGCACAACAAGACATGCCATATCTAGATCAATTCCTA
GGTTCAAAAACACATTTAAATCATCAAATACATGCTAAAATTTCATTCATTTCACGCCTAACCAA
TATGCCATTCAAATGCACCAGAATTAAAGATCATTCAATTACTAATTTAGCTAAGTAAGCACATG
ACATTAAACATCTATTCATGCTCAACCATCAACCAAATTAACCAAAGTACACATATTCAAAACTT
ACCATTTCAAAGTATTACCACTTAGCTCTTGACCATTAAGAATCAATCCAACCAAAAACACTTTA
AACACATATTCAAAACCAAACATTTCACTAGGAACACCATTATAGTATAACATTTAC
Found at i:14828996 original size:20 final size:19
Alignment explanation
Indices: 14828931--14828997 Score: 62
Period size: 20 Copynumber: 3.4 Consensus size: 19
14828921 ATAGATGCGC
*
14828931 AACAGAAGCATCGAAGTACA
1 AACAGAGGCA-CGAAGTACA
* *
14828951 AAAAGAGGCACGAATGTGCA
1 AACAGAGGCACGAA-GTACA
* *
14828971 ATCAGAGGCACTGAAGTTCA
1 AACAGAGGCAC-GAAGTACA
14828991 AACAGAG
1 AACAGAG
14828998 ATATCAAAGT
Statistics
Matches: 38, Mismatches: 7, Indels: 4
0.78 0.14 0.08
Matches are distributed among these distances:
19 4 0.11
20 31 0.82
21 3 0.08
ACGTcount: A:0.45, C:0.18, G:0.25, T:0.12
Consensus pattern (19 bp):
AACAGAGGCACGAAGTACA
Found at i:14831159 original size:6 final size:6
Alignment explanation
Indices: 14831148--14831173 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
14831138 ATAAACTACT
14831148 AAGCTA AAGCTA AAGCTA AAGCTA AA
1 AAGCTA AAGCTA AAGCTA AAGCTA AA
14831174 AGAATCCTTA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.54, C:0.15, G:0.15, T:0.15
Consensus pattern (6 bp):
AAGCTA
Found at i:14837231 original size:25 final size:25
Alignment explanation
Indices: 14837191--14837253 Score: 78
Period size: 25 Copynumber: 2.6 Consensus size: 25
14837181 ACTTAAGAGG
*
14837191 AAAATAAT-AG-ATAAAAATA-ATA
1 AAAATAATAAGAATAAAAATACACA
*
14837213 AAAATGATAAGAATAAAAATACACA
1 AAAATAATAAGAATAAAAATACACA
*
14837238 AGAATAATAAGAATAA
1 AAAATAATAAGAATAA
14837254 GTAAAAAGGA
Statistics
Matches: 34, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
22 7 0.21
23 2 0.06
24 9 0.26
25 16 0.47
ACGTcount: A:0.70, C:0.03, G:0.08, T:0.19
Consensus pattern (25 bp):
AAAATAATAAGAATAAAAATACACA
Found at i:14837321 original size:14 final size:15
Alignment explanation
Indices: 14837287--14837330 Score: 56
Period size: 14 Copynumber: 3.0 Consensus size: 15
14837277 ACCTATAAAT
14837287 AAATAAATAAAATATA
1 AAAT-AATAAAATATA
*
14837303 AAATAGTAAAATA-A
1 AAATAATAAAATATA
14837317 AAATAAT-AAATATA
1 AAATAATAAAATATA
14837331 TTGACAAAAG
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
13 5 0.20
14 8 0.32
15 8 0.32
16 4 0.16
ACGTcount: A:0.73, C:0.00, G:0.02, T:0.25
Consensus pattern (15 bp):
AAATAATAAAATATA
Found at i:14837372 original size:24 final size:23
Alignment explanation
Indices: 14837341--14837389 Score: 64
Period size: 24 Copynumber: 2.1 Consensus size: 23
14837331 TTGACAAAAG
14837341 ATAAAAAAAAT-ATAAGGATAATA
1 ATAAAAAAAATAAT-AGGATAATA
*
14837364 ATAATAAAAAATAATAGGCTAATA
1 ATAA-AAAAAATAATAGGATAATA
14837388 AT
1 AT
14837390 GTAATAGTAA
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
23 4 0.17
24 17 0.74
25 2 0.09
ACGTcount: A:0.65, C:0.02, G:0.08, T:0.24
Consensus pattern (23 bp):
ATAAAAAAAATAATAGGATAATA
Found at i:14837666 original size:3 final size:3
Alignment explanation
Indices: 14837615--14837647 Score: 66
Period size: 3 Copynumber: 11.0 Consensus size: 3
14837605 AAAATGGTGG
14837615 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
14837648 AGATGCAAAA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 30 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:14837681 original size:21 final size:22
Alignment explanation
Indices: 14837638--14837689 Score: 72
Period size: 22 Copynumber: 2.4 Consensus size: 22
14837628 AATAATAATA
14837638 ATAATAATAAAGATGCAAAATG
1 ATAATAATAAAGATGCAAAATG
14837660 ATAATAAGT-AAGATGC-AAATG
1 ATAATAA-TAAAGATGCAAAATG
*
14837681 AAAATAATA
1 ATAATAATA
14837690 TATATAAAAA
Statistics
Matches: 27, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
20 1 0.04
21 11 0.41
22 14 0.52
23 1 0.04
ACGTcount: A:0.60, C:0.04, G:0.13, T:0.23
Consensus pattern (22 bp):
ATAATAATAAAGATGCAAAATG
Found at i:14837794 original size:18 final size:18
Alignment explanation
Indices: 14837737--14837795 Score: 59
Period size: 18 Copynumber: 3.2 Consensus size: 18
14837727 TACGTAAATG
*
14837737 TAAATATAAATATAATACA
1 TAAATATAAATA-AATAAA
14837756 TAAA-ATAAAGT-AATAACA
1 TAAATATAAA-TAAATAA-A
*
14837774 TAAATTTAAATAAATAAA
1 TAAATATAAATAAATAAA
14837792 TAAA
1 TAAA
14837796 ATTAGATACA
Statistics
Matches: 34, Mismatches: 2, Indels: 9
0.76 0.04 0.20
Matches are distributed among these distances:
17 4 0.12
18 16 0.47
19 14 0.41
ACGTcount: A:0.66, C:0.03, G:0.02, T:0.29
Consensus pattern (18 bp):
TAAATATAAATAAATAAA
Found at i:14840143 original size:430 final size:430
Alignment explanation
Indices: 14839343--14840224 Score: 1638
Period size: 430 Copynumber: 2.1 Consensus size: 430
14839333 TAAGGTTTGT
* *
14839343 TTTGATCTGCTCCACTGCAACTCCATGGAGATAAGACACGTGACTTCAATCAATTCCACTGAAAC
1 TTTGATCTGCTCCACTGCAACCCCATAGAGATAAGACACGTGACTTCAATCAATTCCACTGAAAC
*
14839408 TTCAAGGAGACCTGCTGTAGCTCCGCTTAATCTACTGAAACTTCAAGGAGATCTGCTGTGGCTTT
66 TTCAAGGAGACCTGCTGTAGCTCCGCTTAATCTACCGAAACTTCAAGGAGATCTGCTGTGGCTTT
*
14839473 TAGCTGCTCCAATGCCATTTCAGGGAGAAGATATTTGATTTTCAACCTGTTACCCTACTGCTTAG
131 TAGCTGCTCCAACGCCATTTCAGGGAGAAGATATTTGATTTTCAACCTGTTACCCTACTGCTTAG
* *
14839538 GGGGTTAAGGCTTGCCATCATTGATCTGTTTCCCTACTGCTTAGGGGTTTAGATCTATAAACTTA
196 GGGGTTAAGGCTTGCCATCATTGATCTGTTTCCCTACTACTTAGGGGTTTAGATCTATAAACTCA
14839603 ACCTGTTATCCTACTGCTTAGGGGTTTAAGGTTTGAAAATTTGGCTCGTTACCCTATTGCTTAGG
261 ACCTGTTATCCTACTGCTTAGGGGTTTAAGGTTTGAAAATTTGGCTCGTTACCCTATTGCTTAGG
14839668 GCAGTAATACCCATAAACTTCAGCTTGTTACCCTACTGCTTAGGGGGTTAAAGCTTGGTGGTTTG
326 GCAGTAATACCCATAAACTTCAGCTTGTTACCCTACTGCTTAGGGGGTTAAAGCTTGGTGGTTTG
* *
14839733 AATCTGCTTCACTGCATTCGAGGAGGCAAAATTCGATGTA
391 AATCTACTTCACTGCATTCGAGAAGGCAAAATTCGATGTA
14839773 TTTGATCTGCTCCACTGCAACCCCATAGAGATAAGACACGTGACTTCAATCAATTCCACTGAAAC
1 TTTGATCTGCTCCACTGCAACCCCATAGAGATAAGACACGTGACTTCAATCAATTCCACTGAAAC
14839838 TTCAAGGAGACCTGCTGTAGCTCCGCTTAATCTACCGAAACTTCAAGGAGATCTGCTGTGGCTTT
66 TTCAAGGAGACCTGCTGTAGCTCCGCTTAATCTACCGAAACTTCAAGGAGATCTGCTGTGGCTTT
14839903 TAGCTGCTCCAACGCCATTTCAGGGAGAAGATATTTGATTTTCAACCTGTTACCCTACTGCTTAG
131 TAGCTGCTCCAACGCCATTTCAGGGAGAAGATATTTGATTTTCAACCTGTTACCCTACTGCTTAG
* *
14839968 GGGGTTAAGGCTTGTCATCATTGATCTGTTTCCCTACTACTTAGGGGTTTAGATCTGTAAACTCA
196 GGGGTTAAGGCTTGCCATCATTGATCTGTTTCCCTACTACTTAGGGGTTTAGATCTATAAACTCA
* *
14840033 ACCTGTTATCCTACTGCTTAGGGGTTTAAGTTTTGAAAATTTGGCTCGTTACCCTATTGTTTAGG
261 ACCTGTTATCCTACTGCTTAGGGGTTTAAGGTTTGAAAATTTGGCTCGTTACCCTATTGCTTAGG
*
14840098 GCAGTAATATCCATAAACTTCAGCTTGTTACCCTACTGCTTAGGGGGTTAAAGCTTGGTGGTTTG
326 GCAGTAATACCCATAAACTTCAGCTTGTTACCCTACTGCTTAGGGGGTTAAAGCTTGGTGGTTTG
*
14840163 AATCTACTTCACTGCATTTGAGAAGGCAAAATTCGATGTA
391 AATCTACTTCACTGCATTCGAGAAGGCAAAATTCGATGTA
14840203 TTTGATCTGCTCCACTGCAACC
1 TTTGATCTGCTCCACTGCAACC
14840225 TCAGGGAGGC
Statistics
Matches: 438, Mismatches: 14, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
430 438 1.00
ACGTcount: A:0.25, C:0.22, G:0.21, T:0.33
Consensus pattern (430 bp):
TTTGATCTGCTCCACTGCAACCCCATAGAGATAAGACACGTGACTTCAATCAATTCCACTGAAAC
TTCAAGGAGACCTGCTGTAGCTCCGCTTAATCTACCGAAACTTCAAGGAGATCTGCTGTGGCTTT
TAGCTGCTCCAACGCCATTTCAGGGAGAAGATATTTGATTTTCAACCTGTTACCCTACTGCTTAG
GGGGTTAAGGCTTGCCATCATTGATCTGTTTCCCTACTACTTAGGGGTTTAGATCTATAAACTCA
ACCTGTTATCCTACTGCTTAGGGGTTTAAGGTTTGAAAATTTGGCTCGTTACCCTATTGCTTAGG
GCAGTAATACCCATAAACTTCAGCTTGTTACCCTACTGCTTAGGGGGTTAAAGCTTGGTGGTTTG
AATCTACTTCACTGCATTCGAGAAGGCAAAATTCGATGTA
Found at i:14840788 original size:15 final size:15
Alignment explanation
Indices: 14840768--14840812 Score: 58
Period size: 15 Copynumber: 3.0 Consensus size: 15
14840758 ATATCATTAT
14840768 AATTAA-ATTATCATA
1 AATTAATATTAT-ATA
14840783 AATTAATATTATATA
1 AATTAATATTATATA
14840798 AATT-ATATTTATATA
1 AATTAATA-TTATATA
14840813 TCATTAATTA
Statistics
Matches: 28, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
14 3 0.11
15 20 0.71
16 5 0.18
ACGTcount: A:0.51, C:0.02, G:0.00, T:0.47
Consensus pattern (15 bp):
AATTAATATTATATA
Found at i:14840791 original size:35 final size:35
Alignment explanation
Indices: 14840751--14840833 Score: 89
Period size: 35 Copynumber: 2.4 Consensus size: 35
14840741 ATTTATTTCA
*
14840751 TAATATAATAT-CATTATAATTAAATTATCATAAAT
1 TAATATAATATAAATTATAATTAAA-TATCATAAAT
* * * *
14840786 TAATATTATATAAATTATATTTATATATCATTAAT
1 TAATATAATATAAATTATAATTAAATATCATAAAT
*
14840821 T-ATATAATTTAAA
1 TAATATAATATAAA
14840834 ACAAATAAAA
Statistics
Matches: 40, Mismatches: 7, Indels: 3
0.80 0.14 0.06
Matches are distributed among these distances:
34 10 0.25
35 20 0.50
36 10 0.25
ACGTcount: A:0.49, C:0.04, G:0.00, T:0.47
Consensus pattern (35 bp):
TAATATAATATAAATTATAATTAAATATCATAAAT
Found at i:14844390 original size:15 final size:14
Alignment explanation
Indices: 14844357--14844419 Score: 58
Period size: 14 Copynumber: 4.4 Consensus size: 14
14844347 ATAATATCAT
*
14844357 TATAATTTA-ATTA
1 TATAAATTATATTA
14844370 TCATAAATTAATATTA
1 T-ATAAATT-ATATTA
14844386 TATAAATTATATTTA
1 TATAAATTATA-TTA
*
14844401 TATATCATTA-ATTA
1 TATA-AATTATATTA
14844415 TATAA
1 TATAA
14844420 TTTAAAACAA
Statistics
Matches: 42, Mismatches: 3, Indels: 10
0.76 0.05 0.18
Matches are distributed among these distances:
13 1 0.02
14 16 0.38
15 16 0.38
16 9 0.21
ACGTcount: A:0.48, C:0.03, G:0.00, T:0.49
Consensus pattern (14 bp):
TATAAATTATATTA
Found at i:14866641 original size:42 final size:42
Alignment explanation
Indices: 14866591--14866813 Score: 209
Period size: 42 Copynumber: 5.0 Consensus size: 42
14866581 CTTCATTTTC
** * *
14866591 TCGATGCCATAGTTCAACTATGGTCTTACACATCTTCACATAA
1 TCGATGCCATAGCCCAGCTATGGTCTTACACATATTCACAT-A
*
14866634 T-GATGCCATAGCCCAGCTATGGTCTTACACATATTCATATA
1 TCGATGCCATAGCCCAGCTATGGTCTTACACATATTCACATA
14866675 TCGATGCCATAGCCCAGCTATGGTCTTACACGTAATCACATATCACATA
1 TCGATGCCATAGCCCAGCTATGGTCTTACAC---AT---AT-TCACATA
*
14866724 TCGATGCCATAGCCCAACTATGGTC-TACACGTAATCACATATCACATA
1 TCGATGCCATAGCCCAGCTATGGTCTTACAC---AT---AT-TCACATA
* * *
14866772 TCGATGCCATAACCCAACTATGGTCTTACACA-AATCACATA
1 TCGATGCCATAGCCCAGCTATGGTCTTACACATATTCACATA
14866813 T
1 T
14866814 TCATATACTG
Statistics
Matches: 162, Mismatches: 9, Indels: 20
0.85 0.05 0.10
Matches are distributed among these distances:
41 10 0.06
42 64 0.40
43 1 0.01
45 2 0.01
46 1 0.01
48 49 0.30
49 35 0.22
ACGTcount: A:0.32, C:0.27, G:0.13, T:0.28
Consensus pattern (42 bp):
TCGATGCCATAGCCCAGCTATGGTCTTACACATATTCACATA
Found at i:14866734 original size:49 final size:49
Alignment explanation
Indices: 14866661--14866895 Score: 266
Period size: 49 Copynumber: 4.8 Consensus size: 49
14866651 TATGGTCTTA
*
14866661 CACATATTCATATATCGATGCCATAGCCCAGCTATGGTCTTACACGTAAT
1 CACATA-TCACATATCGATGCCATAGCCCAGCTATGGTCTTACACGTAAT
*
14866711 CACATATCACATATCGATGCCATAGCCCAACTATGGTC-TACACGTAAT
1 CACATATCACATATCGATGCCATAGCCCAGCTATGGTCTTACACGTAAT
* * *
14866759 CACATATCACATATCGATGCCATAACCCAACTATGGTCTTACAC-AAAT
1 CACATATCACATATCGATGCCATAGCCCAGCTATGGTCTTACACGTAAT
* * * * *
14866807 CACATAT-TCATATACTGATGCCATATCCCAGATATGGTCTTATACAGT-AG
1 CACATATCACATAT-C-GATGCCATAGCCCAGCTATGGTCTTACAC-GTAAT
* * * *
14866857 CATATATCAC--ACCGATGCCATATCCCAGATATGGTCTTA
1 CACATATCACATATCGATGCCATAGCCCAGCTATGGTCTTA
14866896 TACGGAAATC
Statistics
Matches: 165, Mismatches: 14, Indels: 15
0.85 0.07 0.08
Matches are distributed among these distances:
47 31 0.19
48 59 0.36
49 61 0.37
50 13 0.08
51 1 0.01
ACGTcount: A:0.33, C:0.27, G:0.12, T:0.28
Consensus pattern (49 bp):
CACATATCACATATCGATGCCATAGCCCAGCTATGGTCTTACACGTAAT
Found at i:14866827 original size:97 final size:98
Alignment explanation
Indices: 14866661--14866846 Score: 263
Period size: 97 Copynumber: 1.9 Consensus size: 98
14866651 TATGGTCTTA
* * * *
14866661 CACATATTCATATATCGATGCCATAGCCCAGCTATGGTCTTACACGTAATCACATATCACATATC
1 CACATATTCACATATCGATGCCATAACCCAACTATGGTCTTACACGAAATCACATATCACATATC
14866726 GATGCCATAGCCCA-ACTATGGTCTACACGTAAT
66 GATGCCATAGCCCAGA-TATGGTCTACACGTAAT
*
14866759 CACATA-TCACATATCGATGCCATAACCCAACTATGGTCTTACAC-AAATCACATAT-TCATATA
1 CACATATTCACATATCGATGCCATAACCCAACTATGGTCTTACACGAAATCACATATCACATAT-
*
14866821 CTGATGCCATATCCCAGATATGGTCT
65 C-GATGCCATAGCCCAGATATGGTCT
14866847 TATACAGTAG
Statistics
Matches: 79, Mismatches: 6, Indels: 7
0.86 0.07 0.08
Matches are distributed among these distances:
95 5 0.06
96 11 0.14
97 56 0.71
98 7 0.09
ACGTcount: A:0.33, C:0.27, G:0.12, T:0.28
Consensus pattern (98 bp):
CACATATTCACATATCGATGCCATAACCCAACTATGGTCTTACACGAAATCACATATCACATATC
GATGCCATAGCCCAGATATGGTCTACACGTAAT
Found at i:14866960 original size:31 final size:31
Alignment explanation
Indices: 14866917--14867003 Score: 131
Period size: 31 Copynumber: 2.8 Consensus size: 31
14866907 CTTGTCACTT
* *
14866917 GTAGCCGAAGCTACCACTATTCACTGATCAG
1 GTAGCAGAAGCTACCACTTTTCACTGATCAG
*
14866948 GTAGTC-GGAGCTACCACTTTTCACTGATCAG
1 GTAG-CAGAAGCTACCACTTTTCACTGATCAG
14866979 GTAGCAGAAGCTACCACTTTTCACT
1 GTAGCAGAAGCTACCACTTTTCACT
14867004 TGTCATTTGT
Statistics
Matches: 51, Mismatches: 3, Indels: 4
0.88 0.05 0.07
Matches are distributed among these distances:
30 1 0.02
31 49 0.96
32 1 0.02
ACGTcount: A:0.26, C:0.28, G:0.20, T:0.26
Consensus pattern (31 bp):
GTAGCAGAAGCTACCACTTTTCACTGATCAG
Found at i:14867073 original size:50 final size:51
Alignment explanation
Indices: 14866979--14867107 Score: 206
Period size: 50 Copynumber: 2.5 Consensus size: 51
14866969 CACTGATCAG
* *
14866979 GTAGCAGAAGCTACCACTTTTCACTTGTCATTTGTCCTTGATCAGATAAGT
1 GTAGCAGAAGCTATCACTTATCACTTGTCATTTGTCCTTGATCAGATAAGT
* *
14867030 GTAGCTGAAGCTATTACTTATCACTT-TCATTTGTCCTTGATCAGATAAGT
1 GTAGCAGAAGCTATCACTTATCACTTGTCATTTGTCCTTGATCAGATAAGT
*
14867080 GTAGCCGAAGCTATCACTTATCACTTGT
1 GTAGCAGAAGCTATCACTTATCACTTGT
14867108 TTCCATGGTC
Statistics
Matches: 71, Mismatches: 6, Indels: 2
0.90 0.08 0.03
Matches are distributed among these distances:
50 48 0.68
51 23 0.32
ACGTcount: A:0.26, C:0.21, G:0.17, T:0.36
Consensus pattern (51 bp):
GTAGCAGAAGCTATCACTTATCACTTGTCATTTGTCCTTGATCAGATAAGT
Found at i:14869444 original size:15 final size:17
Alignment explanation
Indices: 14869413--14869445 Score: 52
Period size: 15 Copynumber: 2.1 Consensus size: 17
14869403 TTTTAAAAAG
14869413 TTAAAAAGAATTTATTT
1 TTAAAAAGAATTTATTT
14869430 TTAAAAA-AA-TTATTT
1 TTAAAAAGAATTTATTT
14869445 T
1 T
14869446 AAATGTGACA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 7 0.44
16 2 0.12
17 7 0.44
ACGTcount: A:0.48, C:0.00, G:0.03, T:0.48
Consensus pattern (17 bp):
TTAAAAAGAATTTATTT
Found at i:14870774 original size:23 final size:23
Alignment explanation
Indices: 14870743--14870789 Score: 60
Period size: 23 Copynumber: 2.0 Consensus size: 23
14870733 CAGCTTTTGA
*
14870743 AATAATTTTGTTAAACAAA-AAAT
1 AATAATTTT-TTAAAAAAATAAAT
*
14870766 AATAGTTTTTTAAAAAAATAAAT
1 AATAATTTTTTAAAAAAATAAAT
14870789 A
1 A
14870790 TTAACTGAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
22 8 0.38
23 13 0.62
ACGTcount: A:0.57, C:0.02, G:0.04, T:0.36
Consensus pattern (23 bp):
AATAATTTTTTAAAAAAATAAAT
Found at i:14875614 original size:22 final size:21
Alignment explanation
Indices: 14875584--14875624 Score: 55
Period size: 22 Copynumber: 1.9 Consensus size: 21
14875574 ATCAATTATA
*
14875584 ATTCATACAATCACATAACAC
1 ATTCATACAAGCACATAACAC
*
14875605 ATTCAATACAAGCATATAAC
1 ATTC-ATACAAGCACATAAC
14875625 TATACACAAT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 4 0.24
22 13 0.76
ACGTcount: A:0.49, C:0.24, G:0.02, T:0.24
Consensus pattern (21 bp):
ATTCATACAAGCACATAACAC
Found at i:14878558 original size:13 final size:14
Alignment explanation
Indices: 14878540--14878569 Score: 53
Period size: 13 Copynumber: 2.2 Consensus size: 14
14878530 AAAAAAAATT
14878540 ATTATTAATT-TTA
1 ATTATTAATTATTA
14878553 ATTATTAATTATTA
1 ATTATTAATTATTA
14878567 ATT
1 ATT
14878570 TATTTTTAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 10 0.62
14 6 0.38
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (14 bp):
ATTATTAATTATTA
Found at i:14878562 original size:7 final size:7
Alignment explanation
Indices: 14878540--14878569 Score: 53
Period size: 7 Copynumber: 4.4 Consensus size: 7
14878530 AAAAAAAATT
14878540 ATTATTA
1 ATTATTA
14878547 ATT-TTA
1 ATTATTA
14878553 ATTATTA
1 ATTATTA
14878560 ATTATTA
1 ATTATTA
14878567 ATT
1 ATT
14878570 TATTTTTAAT
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
6 6 0.27
7 16 0.73
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (7 bp):
ATTATTA
Found at i:14878866 original size:24 final size:25
Alignment explanation
Indices: 14878820--14878866 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
14878810 AATTAAATAT
14878820 AGCAACATATATGATTTTTTAAGTA
1 AGCAACATATATGATTTTTTAAGTA
* *
14878845 AGCAACATGTAT-TTTTTTTAAG
1 AGCAACATATATGATTTTTTAAG
14878867 GAAAAAATAA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
24 9 0.45
25 11 0.55
ACGTcount: A:0.36, C:0.09, G:0.13, T:0.43
Consensus pattern (25 bp):
AGCAACATATATGATTTTTTAAGTA
Found at i:14884423 original size:43 final size:43
Alignment explanation
Indices: 14884362--14884507 Score: 140
Period size: 43 Copynumber: 3.4 Consensus size: 43
14884352 CAAAGCCGAC
* *
14884362 GTCCCAGAC-GTGGTCTTACATGTAATTCAATATCGATGCCTCT
1 GTCCCAGACAG-GGTCTTACACGTAATTCAATATCGATGCCTAT
* *
14884405 GTCCCAGACAGGGTCTTACACG-AAATCAGATA-CGATGCCAAT
1 GTCCCAGACAGGGTCTTACACGTAATTCA-ATATCGATGCCTAT
* * * *
14884447 GTCCCAGACATGGTCTTATACGTAAATCTC-A-ATCGAGGCCTGT
1 GTCCCAGACAGGGTCTTACACGT-AAT-TCAATATCGATGCCTAT
*
14884490 GTCCCAGACACGGTCTTA
1 GTCCCAGACAGGGTCTTA
14884508 TACGATGTCT
Statistics
Matches: 86, Mismatches: 11, Indels: 12
0.79 0.10 0.11
Matches are distributed among these distances:
42 34 0.40
43 47 0.55
44 3 0.03
45 2 0.02
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.26
Consensus pattern (43 bp):
GTCCCAGACAGGGTCTTACACGTAATTCAATATCGATGCCTAT
Found at i:14887295 original size:24 final size:24
Alignment explanation
Indices: 14887253--14887298 Score: 67
Period size: 24 Copynumber: 1.9 Consensus size: 24
14887243 CTAATAACCT
*
14887253 CTCCCTAATTATCTCCTAAAATCA
1 CTCCCTAATTAACTCCTAAAATCA
14887277 CTCCCT-ATTAACTCACTAAAAT
1 CTCCCTAATTAACTC-CTAAAAT
14887299 ACAACTACTC
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
23 7 0.35
24 13 0.65
ACGTcount: A:0.35, C:0.33, G:0.00, T:0.33
Consensus pattern (24 bp):
CTCCCTAATTAACTCCTAAAATCA
Found at i:14887474 original size:15 final size:15
Alignment explanation
Indices: 14887454--14887485 Score: 64
Period size: 15 Copynumber: 2.1 Consensus size: 15
14887444 CTATTCTGAT
14887454 ATAAATTTACCAACA
1 ATAAATTTACCAACA
14887469 ATAAATTTACCAACA
1 ATAAATTTACCAACA
14887484 AT
1 AT
14887486 TAAACTTAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.53, C:0.19, G:0.00, T:0.28
Consensus pattern (15 bp):
ATAAATTTACCAACA
Found at i:14926270 original size:22 final size:21
Alignment explanation
Indices: 14926227--14926272 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 21
14926217 CAATAATGAA
*
14926227 TTTTAAAAAAAATTATATATT
1 TTTTAAAAAAAATTATAAATT
*
14926248 TTTTAGAAAAAAATT-TAAAAT
1 TTTTA-AAAAAAATTATAAATT
14926269 TTTT
1 TTTT
14926273 CATAATTTCT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
21 13 0.59
22 9 0.41
ACGTcount: A:0.50, C:0.00, G:0.02, T:0.48
Consensus pattern (21 bp):
TTTTAAAAAAAATTATAAATT
Found at i:14926326 original size:19 final size:19
Alignment explanation
Indices: 14926291--14926347 Score: 66
Period size: 19 Copynumber: 3.1 Consensus size: 19
14926281 CTTAAAAAAA
*
14926291 TATAAAT-TTTAGAATTTT
1 TATAAATATTTTGAATTTT
14926309 TATAAATATTTTGAATTTT
1 TATAAATATTTTGAATTTT
14926328 TGA-AAATTATTTTG-ATTTT
1 T-ATAAA-TATTTTGAATTTT
14926347 T
1 T
14926348 TTTATTTTTT
Statistics
Matches: 35, Mismatches: 1, Indels: 5
0.85 0.02 0.12
Matches are distributed among these distances:
18 7 0.20
19 20 0.57
20 8 0.23
ACGTcount: A:0.35, C:0.00, G:0.07, T:0.58
Consensus pattern (19 bp):
TATAAATATTTTGAATTTT
Found at i:14927835 original size:3 final size:3
Alignment explanation
Indices: 14927827--14927853 Score: 54
Period size: 3 Copynumber: 9.0 Consensus size: 3
14927817 AAATTTAAAT
14927827 TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA
14927854 CTTTTAAATA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 24 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:14931915 original size:2 final size:2
Alignment explanation
Indices: 14931866--14931898 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
14931856 ATATATATCT
14931866 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
14931899 CAGCAATGAC
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.52, C:0.00, G:0.48, T:0.00
Consensus pattern (2 bp):
AG
Found at i:14936409 original size:19 final size:18
Alignment explanation
Indices: 14936387--14936427 Score: 55
Period size: 19 Copynumber: 2.2 Consensus size: 18
14936377 TTGAATAAGA
* *
14936387 AATTAGTTGTTGAATGTT
1 AATTAATTGTTCAATGTT
14936405 CAATTAATTGTTCAATGTT
1 -AATTAATTGTTCAATGTT
14936424 AATT
1 AATT
14936428 CATGTGAATT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
18 4 0.20
19 16 0.80
ACGTcount: A:0.32, C:0.05, G:0.15, T:0.49
Consensus pattern (18 bp):
AATTAATTGTTCAATGTT
Found at i:14940118 original size:46 final size:48
Alignment explanation
Indices: 14939884--14940201 Score: 200
Period size: 47 Copynumber: 6.7 Consensus size: 48
14939874 GGGTGTAATA
* * *
14939884 TCGATACCATGTCTCAAACATGGTCTTACACTAG--CTCATC-CATCAAG
1 TCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATCTCAT--AG
* **
14939931 TCGATGCCATGTCCCAGACATGGTCTTACACT-G-ACT-ATCGAAATTGAG
1 TCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATC-TCA-T-AG
* * * *
14939979 GCTGATGCAATGTCCCAGACATGGTCTTACACTGGCTCTCACATCTC-TGTG
1 TC-GATGCCATGTCCCAGACATGGTCTTACACTAGCTCT--CATCTCAT-AG
** * *
14940030 TCGATGCCATGTCTTAGACATGGTCTTACACT-G-ACACATCTCATAG
1 TCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATCTCATAG
* *
14940076 TCGATG-CGTGTCCCAGACAT-GTCTTACACTAGCTCTCGTCTCA-A-
1 TCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATCTCATAG
* * * * * * * *
14940120 TGCCATGTCATGTCCCAGACATAGTATTACACTGGCTCTCATAAT-GTGG
1 T-CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCAT-CTCATAG
*
14940169 CCGATG-CATGTCCCAGACAT-GTCTTACACTAGC
1 TCGATGCCATGTCCCAGACATGGTCTTACACTAGC
14940202 GCATAAATGA
Statistics
Matches: 216, Mismatches: 36, Indels: 39
0.74 0.12 0.13
Matches are distributed among these distances:
44 11 0.05
45 17 0.08
46 48 0.22
47 62 0.29
48 10 0.05
49 31 0.14
50 28 0.13
51 6 0.03
54 3 0.01
ACGTcount: A:0.25, C:0.28, G:0.19, T:0.29
Consensus pattern (48 bp):
TCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATCTCATAG
Found at i:14940118 original size:99 final size:99
Alignment explanation
Indices: 14939930--14940198 Score: 251
Period size: 99 Copynumber: 2.8 Consensus size: 99
14939920 CATCCATCAA
*
14939930 GTCGATGCCATGTCCCAGACATGGTCTTACACTGACTATCGAAATTGAGGCTGATGCAATGTCCC
1 GTCGATGCCATGTCCCAGACATGGTCTTACACTGACCATCGAAATTGAGGCTGATGCAATGTCCC
14939995 AGACATGGTCTTACACTGGCTCTCACATCTCTGT
66 AGACATGGTCTTACACTGGCTCTCACATCTCTGT
** ** * *
14940029 GTCGATGCCATGTCTTAGACATGGTCTTACACTGACACATC-TCA-T-AGTC-GATGC-GTGTCC
1 GTCGATGCCATGTCCCAGACATGGTCTTACACTGAC-CATCGAAATTGAGGCTGATGCAATGTCC
* * **
14940089 CAGACAT-GTCTTACACTAGCTCT--CGTCTCAAT
65 CAGACATGGTCTTACACTGGCTCTCACATCTCTGT
* * * * * * *
14940121 G-CCATGTCATGTCCCAGACATAGTATTACACTGGCTC-TC-ATAA-TGTGGCCGATGC-ATGTC
1 GTCGATGCCATGTCCCAGACATGGTCTTACACTGAC-CATCGA-AATTGAGGCTGATGCAATGTC
14940181 CCAGACAT-GTCTTACACT
64 CCAGACATGGTCTTACACT
14940199 AGCGCATAAA
Statistics
Matches: 142, Mismatches: 24, Indels: 14
0.79 0.13 0.08
Matches are distributed among these distances:
90 2 0.01
91 30 0.21
92 9 0.06
93 27 0.19
94 15 0.11
95 12 0.08
96 5 0.04
97 3 0.02
98 1 0.01
99 35 0.25
100 3 0.02
ACGTcount: A:0.23, C:0.28, G:0.20, T:0.29
Consensus pattern (99 bp):
GTCGATGCCATGTCCCAGACATGGTCTTACACTGACCATCGAAATTGAGGCTGATGCAATGTCCC
AGACATGGTCTTACACTGGCTCTCACATCTCTGT
Found at i:14949661 original size:18 final size:18
Alignment explanation
Indices: 14949616--14949661 Score: 65
Period size: 18 Copynumber: 2.6 Consensus size: 18
14949606 GCAAAAACAG
*
14949616 AAAAATATGAAAAAAATA
1 AAAAATATTAAAAAAATA
* *
14949634 AAAAAAATTAAAAAATTA
1 AAAAATATTAAAAAAATA
14949652 AAAAATATTA
1 AAAAATATTA
14949662 TGTGGGTTGA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.76, C:0.00, G:0.02, T:0.22
Consensus pattern (18 bp):
AAAAATATTAAAAAAATA
Found at i:14957695 original size:49 final size:47
Alignment explanation
Indices: 14957474--14957878 Score: 632
Period size: 47 Copynumber: 8.6 Consensus size: 47
14957464 CCCTTCGGGA
* * * * * *
14957474 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
14957521 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
14957568 CTCATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
14957615 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
14957662 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
14957711 CTTATCACATATATACACTTTCACATTCATCACATCGG-CATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
14957757 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
14957804 CTTATCACATATATATACACTTTCACATTTATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
14957853 CTTATCACATATATATACATTCACAT
1 CTTATCACATATATACACTTTCACAT
14957879 CACAATTATC
Statistics
Matches: 332, Mismatches: 21, Indels: 10
0.91 0.06 0.03
Matches are distributed among these distances:
46 45 0.14
47 196 0.59
49 91 0.27
ACGTcount: A:0.29, C:0.29, G:0.08, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:14957824 original size:142 final size:143
Alignment explanation
Indices: 14957474--14957878 Score: 663
Period size: 142 Copynumber: 2.9 Consensus size: 143
14957464 CCCTTCGGGA
* * * * * * * *
14957474 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCAC--ATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
*
14957537 ACTTTCACATTCATCACATCGGCCATTAGGCCTCATCACATATATACACTTTCACATTCATCACA
66 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
14957602 TCGGCTATTAGGC
131 TCGGCTATTAGGC
14957615 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
* *
14957680 ACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACACTTTCACATTCATCACA
66 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
14957745 TCGGC-ATTAGGC
131 TCGGCTATTAGGC
14957757 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
* * *
14957822 ACTTTCACATTTATCACATCGGCCATTAGGCCTTATCACATATATATACATTCACAT
66 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACAT
14957879 CACAATTATC
Statistics
Matches: 246, Mismatches: 16, Indels: 3
0.93 0.06 0.01
Matches are distributed among these distances:
141 47 0.19
142 124 0.50
143 75 0.30
ACGTcount: A:0.29, C:0.29, G:0.08, T:0.33
Consensus pattern (143 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
TCGGCTATTAGGC
Found at i:14962653 original size:20 final size:20
Alignment explanation
Indices: 14962616--14962653 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
14962606 TGATGGGGAG
*
14962616 CAAGAATATCAAGTTGGATT
1 CAAGAATATCAAGCTGGATT
14962636 CAAGAA-ATCGAAGCTGGA
1 CAAGAATATC-AAGCTGGA
14962654 GGAGAGAGAA
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
19 3 0.19
20 13 0.81
ACGTcount: A:0.42, C:0.13, G:0.24, T:0.21
Consensus pattern (20 bp):
CAAGAATATCAAGCTGGATT
Found at i:14964604 original size:46 final size:46
Alignment explanation
Indices: 14964552--14964917 Score: 563
Period size: 46 Copynumber: 8.0 Consensus size: 46
14964542 AGTGTGCTCT
*
14964552 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAGC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
14964598 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
*
14964644 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAGC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
*
14964690 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAGC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* *
14964736 CTGATATGAAATGTGTAAGACCATGGGTAAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
14964782 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* **** *
14964828 GTGATATGAAATAAACAAGACCATGGTTGAAAGATACCACGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* * * * * *
14964874 ATGACA-GAAAATGAGTAAGACCATAGTTGAAAGACACTATGGCA
1 CTGATATG-AAATGTGTAAGACCATGGTTGAAAGATACCATGGCA
14964918 TCATGTCAAA
Statistics
Matches: 297, Mismatches: 22, Indels: 2
0.93 0.07 0.01
Matches are distributed among these distances:
45 1 0.00
46 296 1.00
ACGTcount: A:0.38, C:0.15, G:0.24, T:0.22
Consensus pattern (46 bp):
CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
Found at i:14972219 original size:96 final size:96
Alignment explanation
Indices: 14972055--14972239 Score: 264
Period size: 96 Copynumber: 1.9 Consensus size: 96
14972045 GAGGAGTACA
* * * *
14972055 ATTGATCTCTCACCTGTTGTGAAATGTTATTGGTGTAGTTCAAAAGATCATAAGGGTTTCTGACG
1 ATTGAGCTATCACCTGTTGTGAAATGTTATTGGTATAGTTCAAAAGATCATAAGGGTTTCTAACG
*
14972120 TCCAATTAAATATCTAAATAGAGAGAATACG
66 TCCAATTAAATATCCAAATAGAGAGAATACG
* * *
14972151 ATTGAGCTATCACCTTTTGTGCAATGTTATTGGTATAGTTCAAAAGATCATAAGGGTCTTC-AAT
1 ATTGAGCTATCACCTGTTGTGAAATGTTATTGGTATAGTTCAAAAGATCATAAGGGT-TTCTAAC
* *
14972215 GTCCATTTAAATATCCAACTAGAGA
65 GTCCAATTAAATATCCAAATAGAGA
14972240 AGAAAGTAAG
Statistics
Matches: 78, Mismatches: 10, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
96 75 0.96
97 3 0.04
ACGTcount: A:0.33, C:0.15, G:0.18, T:0.34
Consensus pattern (96 bp):
ATTGAGCTATCACCTGTTGTGAAATGTTATTGGTATAGTTCAAAAGATCATAAGGGTTTCTAACG
TCCAATTAAATATCCAAATAGAGAGAATACG
Found at i:14981387 original size:14 final size:12
Alignment explanation
Indices: 14981358--14981387 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
14981348 TCGTGTGGCT
*
14981358 CACACGGCCTAC
1 CACACAGCCTAC
14981370 CACACAGCCTAC
1 CACACAGCCTAC
14981382 CACACA
1 CACACA
14981388 ACCGTGTGGC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.33, C:0.50, G:0.10, T:0.07
Consensus pattern (12 bp):
CACACAGCCTAC
Found at i:14981932 original size:13 final size:13
Alignment explanation
Indices: 14981883--14981935 Score: 51
Period size: 13 Copynumber: 4.2 Consensus size: 13
14981873 GAAAGAAAAG
14981883 AAGAAAAAG-AA-
1 AAGAAAAAGAAAT
14981894 AAG-AAAAGAAAAT
1 AAGAAAAAG-AAAT
*
14981907 GAGAGAAAA-AAAT
1 AAGA-AAAAGAAAT
14981920 AAGAAAAAGAAAT
1 AAGAAAAAGAAAT
14981933 AAG
1 AAG
14981936 GGAAGAAGAA
Statistics
Matches: 34, Mismatches: 2, Indels: 10
0.74 0.04 0.22
Matches are distributed among these distances:
10 5 0.15
11 3 0.09
12 6 0.18
13 16 0.47
15 4 0.12
ACGTcount: A:0.75, C:0.00, G:0.19, T:0.06
Consensus pattern (13 bp):
AAGAAAAAGAAAT
Found at i:14981932 original size:26 final size:24
Alignment explanation
Indices: 14981874--14981932 Score: 66
Period size: 26 Copynumber: 2.3 Consensus size: 24
14981864 ACAAGGAACG
*
14981874 AAAGAAAAGAAGAAAAAGAAAAGA
1 AAAGAAATGAAGAAAAAGAAAAGA
14981898 AAAGAAAATGAGAGAAAAA-AATAAGAA
1 AAAG-AAATGA-AGAAAAAGAA-AAG-A
14981925 AAAGAAAT
1 AAAGAAAT
14981933 AAGGGAAGAA
Statistics
Matches: 30, Mismatches: 1, Indels: 6
0.81 0.03 0.16
Matches are distributed among these distances:
24 4 0.13
25 7 0.23
26 14 0.47
27 5 0.17
ACGTcount: A:0.76, C:0.00, G:0.19, T:0.05
Consensus pattern (24 bp):
AAAGAAATGAAGAAAAAGAAAAGA
Found at i:14984629 original size:14 final size:14
Alignment explanation
Indices: 14984610--14984636 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
14984600 ATTTCAGCTT
14984610 AAAAAGAAAAAAAA
1 AAAAAGAAAAAAAA
14984624 AAAAAGAAAAAAA
1 AAAAAGAAAAAAA
14984637 GGACCGAATA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.93, C:0.00, G:0.07, T:0.00
Consensus pattern (14 bp):
AAAAAGAAAAAAAA
Found at i:14998942 original size:32 final size:32
Alignment explanation
Indices: 14998875--14998942 Score: 82
Period size: 32 Copynumber: 2.1 Consensus size: 32
14998865 TAGGGGAGAC
* ** *
14998875 GTTGCTTGATTCTCTCTATGGTTGATTCAGTG
1 GTTGCTTGATTCTCTCCATGACTGATTCAGCG
**
14998907 GTTGCTTGATTCTCTCCATGACTGATTTGGCG
1 GTTGCTTGATTCTCTCCATGACTGATTCAGCG
14998939 GTTG
1 GTTG
14998943 AGATAGGTAG
Statistics
Matches: 30, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
32 30 1.00
ACGTcount: A:0.12, C:0.18, G:0.26, T:0.44
Consensus pattern (32 bp):
GTTGCTTGATTCTCTCCATGACTGATTCAGCG
Found at i:15003969 original size:7 final size:8
Alignment explanation
Indices: 15003932--15003979 Score: 55
Period size: 8 Copynumber: 6.1 Consensus size: 8
15003922 TAGGTATAAG
15003932 ATAT-TTA
1 ATATATTA
15003939 ATATATATA
1 ATATAT-TA
15003948 ATATATTA
1 ATATATTA
*
15003956 TTATATTA
1 ATATATTA
15003964 AT-TATTA
1 ATATATTA
*
15003971 ATTTATTA
1 ATATATTA
15003979 A
1 A
15003980 AACATAAAAG
Statistics
Matches: 36, Mismatches: 2, Indels: 5
0.84 0.05 0.12
Matches are distributed among these distances:
7 11 0.31
8 17 0.47
9 8 0.22
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (8 bp):
ATATATTA
Found at i:15006515 original size:20 final size:20
Alignment explanation
Indices: 15006492--15006552 Score: 56
Period size: 18 Copynumber: 3.1 Consensus size: 20
15006482 CCTTCTTCAC
15006492 TTTTTCTTCTCTTTCTCTTTT
1 TTTTTCTTCTCTTTCTC-TTT
* *
15006513 TTTTTCATCCTGTTTCT-TTT
1 TTTTTC-TTCTCTTTCTCTTT
*
15006533 TTTTTCTT-TTTTTC-CTTT
1 TTTTTCTTCTCTTTCTCTTT
15006551 TT
1 TT
15006553 CTTTTTGATT
Statistics
Matches: 34, Mismatches: 4, Indels: 7
0.76 0.09 0.16
Matches are distributed among these distances:
18 10 0.29
19 1 0.03
20 9 0.26
21 6 0.18
22 8 0.24
ACGTcount: A:0.02, C:0.20, G:0.02, T:0.77
Consensus pattern (20 bp):
TTTTTCTTCTCTTTCTCTTT
Found at i:15007317 original size:63 final size:63
Alignment explanation
Indices: 15007169--15007326 Score: 172
Period size: 63 Copynumber: 2.5 Consensus size: 63
15007159 GCACGGGCAT
* * * * * * * *
15007169 GGGCACGTGTCAAGACCGTGTGACTCACTATTCATGAATTAGAGACACATAGGCCAGGGACAC
1 GGGCACATGTCCAGGCCGTGTGACTCACTGTTCACGAATTAAAGACACATAGGCAAGAGACAC
* * * *
15007232 GGGCACGTGTCCAGGTCTTGTGACTCACTGTTCACGAATTAAAGACACATAGGCAAGAGACAT
1 GGGCACATGTCCAGGCCGTGTGACTCACTGTTCACGAATTAAAGACACATAGGCAAGAGACAC
** * *
15007295 GGGTGCATGTTCAGGCCGTGTGACTCATTGTT
1 GGGCACATGTCCAGGCCGTGTGACTCACTGTT
15007327 GCATAATAGG
Statistics
Matches: 78, Mismatches: 17, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
63 78 1.00
ACGTcount: A:0.27, C:0.22, G:0.28, T:0.23
Consensus pattern (63 bp):
GGGCACATGTCCAGGCCGTGTGACTCACTGTTCACGAATTAAAGACACATAGGCAAGAGACAC
Found at i:15015128 original size:15 final size:14
Alignment explanation
Indices: 15015102--15015145 Score: 61
Period size: 14 Copynumber: 3.1 Consensus size: 14
15015092 TTTATACTTT
15015102 AATTAATTAATTAA
1 AATTAATTAATTAA
15015116 AATTAACTTAATTAA
1 AATTAA-TTAATTAA
* *
15015131 CATTAAATAATTAA
1 AATTAATTAATTAA
15015145 A
1 A
15015146 TTATAAACAT
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
14 13 0.50
15 13 0.50
ACGTcount: A:0.57, C:0.05, G:0.00, T:0.39
Consensus pattern (14 bp):
AATTAATTAATTAA
Found at i:15020365 original size:46 final size:45
Alignment explanation
Indices: 15020291--15020464 Score: 190
Period size: 46 Copynumber: 3.8 Consensus size: 45
15020281 GTAACCCGCC
* * *
15020291 CATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTTGCAT
1 CATAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCATTTGCAT
* * *
15020336 CAATGAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 C-ATAAGTGAACTCGGACTCAACTCAACGAGTTCGG--G-C-ATTTGCAT
* * * *
15020386 C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CATAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCATTTGCAT
15020429 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG
1 -CATAAGTGAACTCGGACTCAACTCAACGAGTTCGG
15020465 ATGCCCAAAT
Statistics
Matches: 107, Mismatches: 14, Indels: 15
0.79 0.10 0.11
Matches are distributed among these distances:
43 5 0.05
44 2 0.02
45 3 0.03
46 59 0.55
47 28 0.26
48 3 0.03
49 1 0.01
50 6 0.06
ACGTcount: A:0.29, C:0.28, G:0.22, T:0.21
Consensus pattern (45 bp):
CATAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCATTTGCAT
Found at i:15020410 original size:93 final size:93
Alignment explanation
Indices: 15020297--15020469 Score: 292
Period size: 93 Copynumber: 1.9 Consensus size: 93
15020287 CGCCCATAAG
* * * *
15020297 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTTGCATCAATGAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCAATAAGTGAACTCGGACTCAACTCA
15020362 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
* *
15020390 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCAATAAGTGAACTCGGACTCAACTCA
15020455 ACGAGTTCGGATGCC
66 ACGAGTTCGGATGCC
15020470 CAAATATCCT
Statistics
Matches: 74, Mismatches: 6, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCAATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:15022823 original size:30 final size:30
Alignment explanation
Indices: 15022779--15022867 Score: 101
Period size: 30 Copynumber: 3.0 Consensus size: 30
15022769 CAAAGATAAC
15022779 AAGAAAACC-GAATAAAGAAATCCAAGATA
1 AAGAAAACCAGAATAAAGAAATCCAAGATA
* *
15022808 GAGAAACCCAGAATAAAGAAATCC-AGAATA
1 AAGAAAACCAGAATAAAGAAATCCAAG-ATA
* * * *
15022838 AAGAGATCCAGGATAAAGAAACCCAAGATA
1 AAGAAAACCAGAATAAAGAAATCCAAGATA
15022868 CGATACTATG
Statistics
Matches: 50, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
29 9 0.18
30 39 0.78
31 2 0.04
ACGTcount: A:0.57, C:0.16, G:0.17, T:0.10
Consensus pattern (30 bp):
AAGAAAACCAGAATAAAGAAATCCAAGATA
Found at i:15022827 original size:15 final size:15
Alignment explanation
Indices: 15022779--15022858 Score: 92
Period size: 15 Copynumber: 5.4 Consensus size: 15
15022769 CAAAGATAAC
*
15022779 AAGAAAACC-GAATA
1 AAGAAATCCAGAATA
15022793 AAGAAATCCA-AGATA
1 AAGAAATCCAGA-ATA
* *
15022808 GAGAAACCCAGAATA
1 AAGAAATCCAGAATA
15022823 AAGAAATCCAGAATA
1 AAGAAATCCAGAATA
* *
15022838 AAGAGATCCAGGATA
1 AAGAAATCCAGAATA
15022853 AAGAAA
1 AAGAAA
15022859 CCCAAGATAC
Statistics
Matches: 55, Mismatches: 8, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
14 9 0.16
15 45 0.82
16 1 0.02
ACGTcount: A:0.59, C:0.14, G:0.17, T:0.10
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:15022867 original size:15 final size:15
Alignment explanation
Indices: 15022790--15022867 Score: 79
Period size: 15 Copynumber: 5.2 Consensus size: 15
15022780 AGAAAACCGA
15022790 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
* *
15022805 ATAGAGAAA-CCCAG
1 ATAAAGAAATCCAAG
15022819 AATAAAGAAATCC-AG
1 -ATAAAGAAATCCAAG
* *
15022834 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
15022850 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
15022865 ATA
1 ATA
15022868 CGATACTATG
Statistics
Matches: 52, Mismatches: 8, Indels: 6
0.79 0.12 0.09
Matches are distributed among these distances:
14 4 0.08
15 45 0.87
16 3 0.06
ACGTcount: A:0.56, C:0.15, G:0.17, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:15025860 original size:46 final size:46
Alignment explanation
Indices: 15025785--15025956 Score: 172
Period size: 46 Copynumber: 3.7 Consensus size: 46
15025775 TGTAACCTGC
* * *
15025785 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCAGACTCAACTCAACGAGTTCGGGCGTTCGCAT
* *
15025831 CCATGAGTGAACTCAGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCAGACTCAACTCAACGAGTTCGG--G-C--GTTCGCAT
* * * * *
15025881 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCAGACTCAACTCAACGAGTTCGGGCGTTCGCAT
*
15025924 CCATAAGTGAACTCAGACTTAACTCAACGAGTT
1 CCATAAGTGAACTCAGACTCAACTCAACGAGTT
15025957 TGGATGCCCA
Statistics
Matches: 102, Mismatches: 15, Indels: 18
0.76 0.11 0.13
Matches are distributed among these distances:
42 2 0.02
43 3 0.03
44 2 0.02
45 2 0.02
46 55 0.54
47 27 0.26
48 3 0.03
49 2 0.02
50 3 0.03
51 3 0.03
ACGTcount: A:0.30, C:0.29, G:0.20, T:0.22
Consensus pattern (46 bp):
CCATAAGTGAACTCAGACTCAACTCAACGAGTTCGGGCGTTCGCAT
Found at i:15025951 original size:93 final size:93
Alignment explanation
Indices: 15025792--15025964 Score: 292
Period size: 93 Copynumber: 1.9 Consensus size: 93
15025782 TGCCCATAAG
* * *
15025792 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATGAGTGAACTCAGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCA
15025857 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
* *
15025885 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCAGACTTAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCA
*
15025950 ACGAGTTTGGATGCC
66 ACGAGTTCGGATGCC
15025965 CAAATATCCT
Statistics
Matches: 74, Mismatches: 6, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.28, C:0.29, G:0.21, T:0.22
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:15028115 original size:17 final size:17
Alignment explanation
Indices: 15028093--15028127 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
15028083 ATAGGGGTGT
15028093 TACAAATTAGGTGGCTA
1 TACAAATTAGGTGGCTA
15028110 TACAAATTAGGTGGCTA
1 TACAAATTAGGTGGCTA
15028127 T
1 T
15028128 CAAGATAAAC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.34, C:0.11, G:0.23, T:0.31
Consensus pattern (17 bp):
TACAAATTAGGTGGCTA
Found at i:15030076 original size:16 final size:16
Alignment explanation
Indices: 15030046--15030093 Score: 57
Period size: 15 Copynumber: 3.1 Consensus size: 16
15030036 GAAAATTAAT
15030046 ATAAAATCT-AAAAT-A
1 ATAAAAT-TAAAAATAA
15030061 ATAATAATTAAAAATAA
1 ATAA-AATTAAAAATAA
15030078 ATAAAATT-AAAATAA
1 ATAAAATTAAAAATAA
15030093 A
1 A
15030094 CTTAAAATAG
Statistics
Matches: 30, Mismatches: 0, Indels: 6
0.83 0.00 0.17
Matches are distributed among these distances:
15 13 0.43
16 12 0.40
17 5 0.17
ACGTcount: A:0.71, C:0.02, G:0.00, T:0.27
Consensus pattern (16 bp):
ATAAAATTAAAAATAA
Found at i:15030092 original size:11 final size:11
Alignment explanation
Indices: 15030037--15030107 Score: 58
Period size: 11 Copynumber: 6.5 Consensus size: 11
15030027 ATAGCTTAAG
*
15030037 AAAATTAATAT
1 AAAATTAAAAT
15030048 AAAATCTAAAAT
1 AAAAT-TAAAAT
*
15030060 AATAA-T-AATT
1 AA-AATTAAAAT
*
15030070 AAAAAT-AAAT
1 AAAATTAAAAT
15030080 AAAATTAAAAT
1 AAAATTAAAAT
*
15030091 AAACTTAAAAT
1 AAAATTAAAAT
*
15030102 AGAATT
1 AAAATT
15030108 TCCTATTTTT
Statistics
Matches: 49, Mismatches: 7, Indels: 8
0.77 0.11 0.12
Matches are distributed among these distances:
9 2 0.04
10 14 0.29
11 24 0.49
12 7 0.14
13 2 0.04
ACGTcount: A:0.66, C:0.03, G:0.01, T:0.30
Consensus pattern (11 bp):
AAAATTAAAAT
Found at i:15031108 original size:28 final size:28
Alignment explanation
Indices: 15031035--15031108 Score: 103
Period size: 28 Copynumber: 2.6 Consensus size: 28
15031025 GAGGCTCTAA
* *
15031035 AAGGAAAGCCTTTGTGGAAATTTTTGGAT
1 AAGG-AAGCCTTTGTGGCAATTTCTGGAT
*
15031064 AATGAAGCCTTTGTGGCAATTTCTGGAT
1 AAGGAAGCCTTTGTGGCAATTTCTGGAT
*
15031092 AAGGAAGCCTTTATGGC
1 AAGGAAGCCTTTGTGGC
15031109 TATCTCTAAA
Statistics
Matches: 40, Mismatches: 5, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
28 37 0.93
29 3 0.08
ACGTcount: A:0.28, C:0.12, G:0.27, T:0.32
Consensus pattern (28 bp):
AAGGAAGCCTTTGTGGCAATTTCTGGAT
Found at i:15034815 original size:21 final size:21
Alignment explanation
Indices: 15034791--15034830 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
15034781 GTTTTGATAT
15034791 GGAAAATGGAGAAA-AAGTGAA
1 GGAAAAT-GAGAAACAAGTGAA
*
15034812 GGAAAGTGAGAAACAAGTG
1 GGAAAATGAGAAACAAGTG
15034831 GAGAGTTAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 6 0.35
21 11 0.65
ACGTcount: A:0.53, C:0.03, G:0.35, T:0.10
Consensus pattern (21 bp):
GGAAAATGAGAAACAAGTGAA
Found at i:15041760 original size:44 final size:44
Alignment explanation
Indices: 15041697--15041798 Score: 204
Period size: 44 Copynumber: 2.3 Consensus size: 44
15041687 ATCAGCATCT
15041697 GAGTTTGCTACATTAAGCTACTGATCGAAATTCTTGAAATTCAA
1 GAGTTTGCTACATTAAGCTACTGATCGAAATTCTTGAAATTCAA
15041741 GAGTTTGCTACATTAAGCTACTGATCGAAATTCTTGAAATTCAA
1 GAGTTTGCTACATTAAGCTACTGATCGAAATTCTTGAAATTCAA
15041785 GAGTTTGCTACATT
1 GAGTTTGCTACATT
15041799 GGCAGAGAGA
Statistics
Matches: 58, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
44 58 1.00
ACGTcount: A:0.32, C:0.16, G:0.17, T:0.35
Consensus pattern (44 bp):
GAGTTTGCTACATTAAGCTACTGATCGAAATTCTTGAAATTCAA
Found at i:15046648 original size:35 final size:35
Alignment explanation
Indices: 15046602--15046671 Score: 140
Period size: 35 Copynumber: 2.0 Consensus size: 35
15046592 CTATTGTTGA
15046602 AATTTTGATTCCTAAAGGTTGTAAACTAGTTTAAG
1 AATTTTGATTCCTAAAGGTTGTAAACTAGTTTAAG
15046637 AATTTTGATTCCTAAAGGTTGTAAACTAGTTTAAG
1 AATTTTGATTCCTAAAGGTTGTAAACTAGTTTAAG
15046672 GTGATAGAAT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 35 1.00
ACGTcount: A:0.34, C:0.09, G:0.17, T:0.40
Consensus pattern (35 bp):
AATTTTGATTCCTAAAGGTTGTAAACTAGTTTAAG
Found at i:15051870 original size:24 final size:24
Alignment explanation
Indices: 15051819--15051870 Score: 59
Period size: 24 Copynumber: 2.2 Consensus size: 24
15051809 CTGAGGACAT
*
15051819 TTTGCACATTATTCAAGATTACAT
1 TTTGCACATTATTCAAGATTACAC
* * * *
15051843 TTTGCATATTATTCGAGTTTGCAC
1 TTTGCACATTATTCAAGATTACAC
15051867 TTTG
1 TTTG
15051871 GCTAAGGAAG
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.25, C:0.15, G:0.13, T:0.46
Consensus pattern (24 bp):
TTTGCACATTATTCAAGATTACAC
Found at i:15057498 original size:22 final size:22
Alignment explanation
Indices: 15057457--15057508 Score: 61
Period size: 22 Copynumber: 2.4 Consensus size: 22
15057447 TTGTACGAGA
* *
15057457 TTTGTACTACGGTGCATATT-G
1 TTTGCACTTCGGTGCATATTGG
*
15057478 TTCTGCACTTCGGTGCCTATTGG
1 TT-TGCACTTCGGTGCATATTGG
15057501 TTTGCACT
1 TTTGCACT
15057509 ATAGTGCCTA
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
21 2 0.08
22 21 0.81
23 3 0.12
ACGTcount: A:0.13, C:0.21, G:0.23, T:0.42
Consensus pattern (22 bp):
TTTGCACTTCGGTGCATATTGG
Found at i:15057537 original size:22 final size:21
Alignment explanation
Indices: 15057512--15057567 Score: 58
Period size: 22 Copynumber: 2.6 Consensus size: 21
15057502 TTGCACTATA
* *
15057512 GTGCCTACTACTTTGTATTTTT
1 GTGCCTACTA-TTTGTACTTTG
**
15057534 GTGCCTTTTGATTTGTACTTTG
1 GTGCCTACT-ATTTGTACTTTG
15057556 GTGCCTACTATT
1 GTGCCTACTATT
15057568 CAGCACTTCA
Statistics
Matches: 27, Mismatches: 6, Indels: 3
0.75 0.17 0.08
Matches are distributed among these distances:
21 3 0.11
22 23 0.85
23 1 0.04
ACGTcount: A:0.12, C:0.18, G:0.18, T:0.52
Consensus pattern (21 bp):
GTGCCTACTATTTGTACTTTG
Found at i:15058969 original size:16 final size:16
Alignment explanation
Indices: 15058921--15058969 Score: 55
Period size: 16 Copynumber: 3.1 Consensus size: 16
15058911 GGTTAAATAA
*
15058921 TTATTTTT-TATGGGT
1 TTATTTTTATATGGTT
* *
15058936 TTATTATTATATGTTT
1 TTATTTTTATATGGTT
*
15058952 TTATTTTTATTTGGTT
1 TTATTTTTATATGGTT
15058968 TT
1 TT
15058970 TTTCTGTTTT
Statistics
Matches: 27, Mismatches: 6, Indels: 1
0.79 0.18 0.03
Matches are distributed among these distances:
15 7 0.26
16 20 0.74
ACGTcount: A:0.16, C:0.00, G:0.12, T:0.71
Consensus pattern (16 bp):
TTATTTTTATATGGTT
Found at i:15063607 original size:14 final size:14
Alignment explanation
Indices: 15063585--15063617 Score: 57
Period size: 14 Copynumber: 2.4 Consensus size: 14
15063575 TGAGTTGGGG
*
15063585 CATCCGCATACATA
1 CATCTGCATACATA
15063599 CATCTGCATACATA
1 CATCTGCATACATA
15063613 CATCT
1 CATCT
15063618 ATATACAAAG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.33, C:0.33, G:0.06, T:0.27
Consensus pattern (14 bp):
CATCTGCATACATA
Found at i:15063623 original size:14 final size:14
Alignment explanation
Indices: 15063591--15063624 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
15063581 GGGGCATCCG
*
15063591 CATACATACATCTG
1 CATACATACATCTA
15063605 CATACATACATCTA
1 CATACATACATCTA
*
15063619 TATACA
1 CATACA
15063625 AAGCTTTTGG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.41, C:0.26, G:0.03, T:0.29
Consensus pattern (14 bp):
CATACATACATCTA
Found at i:15065274 original size:13 final size:13
Alignment explanation
Indices: 15065256--15065281 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
15065246 ATATTTCATT
15065256 ATCTATTATGACA
1 ATCTATTATGACA
15065269 ATCTATTATGACA
1 ATCTATTATGACA
15065282 TATTGTAGTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.08, T:0.38
Consensus pattern (13 bp):
ATCTATTATGACA
Found at i:15065604 original size:49 final size:49
Alignment explanation
Indices: 15065532--15065633 Score: 186
Period size: 49 Copynumber: 2.1 Consensus size: 49
15065522 ATAGTATGAA
*
15065532 AAATAAAAGTACCAGAGTAGTCAACGCTTAAATTTGTTATTGTTCTTTC
1 AAATAAAAGTAACAGAGTAGTCAACGCTTAAATTTGTTATTGTTCTTTC
*
15065581 AAATAAAAGTAAGAGAGTAGTCAACGCTTAAATTTGTTATTGTTCTTTC
1 AAATAAAAGTAACAGAGTAGTCAACGCTTAAATTTGTTATTGTTCTTTC
15065630 AAAT
1 AAAT
15065634 TTTAAAATTG
Statistics
Matches: 51, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
49 51 1.00
ACGTcount: A:0.37, C:0.12, G:0.15, T:0.36
Consensus pattern (49 bp):
AAATAAAAGTAACAGAGTAGTCAACGCTTAAATTTGTTATTGTTCTTTC
Found at i:15066309 original size:15 final size:16
Alignment explanation
Indices: 15066289--15066318 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
15066279 TTTAAAAATA
15066289 ATTTTTA-ATTATTTT
1 ATTTTTACATTATTTT
15066304 ATTTTTACATTATTT
1 ATTTTTACATTATTT
15066319 CTCTCTCTCT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 7 0.50
16 7 0.50
ACGTcount: A:0.27, C:0.03, G:0.00, T:0.70
Consensus pattern (16 bp):
ATTTTTACATTATTTT
Found at i:15069957 original size:32 final size:32
Alignment explanation
Indices: 15069883--15069959 Score: 93
Period size: 33 Copynumber: 2.4 Consensus size: 32
15069873 ATTCCTTTTG
* * *
15069883 GAAGTTTGTATTTGTTTTTTCCCATAAAAATTG
1 GAAGTTTATATTTGGTTTTTCCCA-AAAAATTA
*
15069916 GAAGTTTATATTTGGTTTTTCCTC-AAAATTTA
1 GAAGTTTATATTTGGTTTTTCC-CAAAAAATTA
15069948 GAAGTTTATATT
1 GAAGTTTATATT
15069960 CAATAAAATT
Statistics
Matches: 39, Mismatches: 4, Indels: 3
0.85 0.09 0.07
Matches are distributed among these distances:
32 18 0.46
33 20 0.51
34 1 0.03
ACGTcount: A:0.29, C:0.08, G:0.14, T:0.49
Consensus pattern (32 bp):
GAAGTTTATATTTGGTTTTTCCCAAAAAATTA
Found at i:15073596 original size:21 final size:22
Alignment explanation
Indices: 15073570--15073610 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
15073560 GCTCACTAAC
15073570 TACC-TTGTATCAGTAGAAGTA
1 TACCTTTGTATCAGTAGAAGTA
*
15073591 TACCTTTGTGTCAGTAGAAG
1 TACCTTTGTATCAGTAGAAG
15073611 CCAAGTTGTA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 4 0.22
22 14 0.78
ACGTcount: A:0.29, C:0.15, G:0.22, T:0.34
Consensus pattern (22 bp):
TACCTTTGTATCAGTAGAAGTA
Found at i:15075216 original size:40 final size:40
Alignment explanation
Indices: 15075139--15075219 Score: 101
Period size: 40 Copynumber: 2.0 Consensus size: 40
15075129 TTAGAGTGCA
*
15075139 TTCAGGGGCACGAATGTGCAAACAAAGACATCAAAGTGTT
1 TTCAGGGGCACGAATGTGCAAACAAAGACACCAAAGTGTT
* ** *
15075179 TTCAGGGGCAC-AGTTGTGCAAACAGGGACACCGAAGTGTT
1 TTCAGGGGCACGA-ATGTGCAAACAAAGACACCAAAGTGTT
15075219 T
1 T
15075220 ACTAGGGCAC
Statistics
Matches: 35, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
39 1 0.03
40 34 0.97
ACGTcount: A:0.32, C:0.19, G:0.28, T:0.21
Consensus pattern (40 bp):
TTCAGGGGCACGAATGTGCAAACAAAGACACCAAAGTGTT
Done.