Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A06
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 115140250
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2234201 characters in sequence are not A, C, G, or T
File 50 of 345
Found at i:15078819 original size:20 final size:18
Alignment explanation
Indices: 15078769--15078878 Score: 64
Period size: 19 Copynumber: 5.9 Consensus size: 18
15078759 CTATAAGATA
15078769 AATATTAAATTAA-ATTT
1 AATATTAAATTAATATTT
15078786 AATATTAACA-TAATCACTTT
1 AATATTAA-ATTAAT-A-TTT
**
15078806 AATATTAAATTAATAAAAT
1 AATATTAAATTAAT-ATTT
* *
15078825 ACTATTAAGATAAAT-TTT
1 AATATTAA-ATTAATATTT
* * * *
15078843 AATTTTAATTTAAAATTA
1 AATATTAAATTAATATTT
*
15078861 AACTATTAAAATAATATT
1 AA-TATTAAATTAATATT
15078879 ATTTTTGGAA
Statistics
Matches: 68, Mismatches: 17, Indels: 14
0.69 0.17 0.14
Matches are distributed among these distances:
17 14 0.21
18 12 0.18
19 21 0.31
20 21 0.31
ACGTcount: A:0.52, C:0.05, G:0.01, T:0.43
Consensus pattern (18 bp):
AATATTAAATTAATATTT
Found at i:15080040 original size:16 final size:16
Alignment explanation
Indices: 15080019--15080049 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
15080009 TTATGCATGC
*
15080019 AAAATATAAAAGACAG
1 AAAATACAAAAGACAG
15080035 AAAATACAAAAGACA
1 AAAATACAAAAGACA
15080050 TAATAGTGAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.71, C:0.10, G:0.10, T:0.10
Consensus pattern (16 bp):
AAAATACAAAAGACAG
Found at i:15096891 original size:3 final size:3
Alignment explanation
Indices: 15096883--15097010 Score: 79
Period size: 3 Copynumber: 43.0 Consensus size: 3
15096873 TAGTGCCATT
* * * * * * *
15096883 ATA ATA ATA AAA ATA AAA ATA ATA AAA ATA ACA AT- ATG TTA CTA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
* * *
15096930 ATA ATAA ATAA ATA ATG GTA ATA A-A TATA TATA A-A ATA ATA GTA A-A
1 ATA AT-A AT-A ATA ATA ATA ATA ATA -ATA -ATA ATA ATA ATA ATA ATA
15096976 AGTA ATA A-A ATA A-A ATA ATA ATA ATA ATA ATA ATA
1 A-TA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
15097011 CTCTTCCCCT
Statistics
Matches: 98, Mismatches: 18, Indels: 18
0.73 0.13 0.13
Matches are distributed among these distances:
2 11 0.11
3 73 0.74
4 14 0.14
ACGTcount: A:0.66, C:0.02, G:0.04, T:0.29
Consensus pattern (3 bp):
ATA
Found at i:15096993 original size:25 final size:25
Alignment explanation
Indices: 15096883--15097008 Score: 82
Period size: 25 Copynumber: 5.0 Consensus size: 25
15096873 TAGTGCCATT
* *
15096883 ATAATAATAAAAATAAAAATAATAAAA
1 ATAA-AATAATAATAATAATAAT-AAA
* *
15096910 ATAACAATATGTTACTAATAATAAT-AA
1 ATAA-AATA--ATAATAATAATAATAAA
** *
15096937 AT-AAATAATGGTAAT-A-AATATAT
1 ATAAAATAATAATAATAATAATA-AA
*
15096960 ATAAAATAATAGTAA-AAGTAATAAA
1 ATAAAATAATAATAATAA-TAATAAA
15096985 ATAAAATAATAATAATAATAATAA
1 ATAAAATAATAATAATAATAATAA
15097009 TACTCTTCCC
Statistics
Matches: 78, Mismatches: 12, Indels: 20
0.71 0.11 0.18
Matches are distributed among these distances:
21 3 0.04
22 1 0.01
23 8 0.10
24 12 0.15
25 25 0.32
26 7 0.09
27 12 0.15
29 10 0.13
ACGTcount: A:0.66, C:0.02, G:0.04, T:0.29
Consensus pattern (25 bp):
ATAAAATAATAATAATAATAATAAA
Found at i:15097412 original size:30 final size:30
Alignment explanation
Indices: 15097378--15097456 Score: 122
Period size: 30 Copynumber: 2.6 Consensus size: 30
15097368 AGGATAATAG
15097378 AGTTAGTGGGGTAGCTTAGTAGGGTGATGA
1 AGTTAGTGGGGTAGCTTAGTAGGGTGATGA
* * *
15097408 AGTTAGTGGGGTGGCTTAGTGGGGTGATGG
1 AGTTAGTGGGGTAGCTTAGTAGGGTGATGA
*
15097438 AGTTAGTGGGGTAGTTTAG
1 AGTTAGTGGGGTAGCTTAG
15097457 GAGTTAGTGG
Statistics
Matches: 44, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 44 1.00
ACGTcount: A:0.19, C:0.03, G:0.47, T:0.32
Consensus pattern (30 bp):
AGTTAGTGGGGTAGCTTAGTAGGGTGATGA
Found at i:15097419 original size:17 final size:16
Alignment explanation
Indices: 15097377--15097449 Score: 59
Period size: 13 Copynumber: 4.8 Consensus size: 16
15097367 TAGGATAATA
15097377 GAGTTAGTGGGGT-A-
1 GAGTTAGTGGGGTGAT
* *
15097391 G-CTTAGTAGGGTGAT
1 GAGTTAGTGGGGTGAT
15097406 GAAGTTAGTGGGGTG--
1 G-AGTTAGTGGGGTGAT
*
15097421 G-CTTAGTGGGGTGAT
1 GAGTTAGTGGGGTGAT
15097436 GGAGTTAGTGGGGT
1 -GAGTTAGTGGGGT
15097450 AGTTTAGGAG
Statistics
Matches: 45, Mismatches: 6, Indels: 13
0.70 0.09 0.20
Matches are distributed among these distances:
13 20 0.44
14 2 0.04
15 2 0.04
16 1 0.02
17 20 0.44
ACGTcount: A:0.18, C:0.03, G:0.49, T:0.30
Consensus pattern (16 bp):
GAGTTAGTGGGGTGAT
Found at i:15097474 original size:19 final size:19
Alignment explanation
Indices: 15097436--15097475 Score: 55
Period size: 20 Copynumber: 2.1 Consensus size: 19
15097426 GTGGGGTGAT
15097436 GGAGTTAGTGGGGTAGTTTA
1 GGAGTTAGT-GGGTAGTTTA
15097456 GGAGTTAGT-GGTCAGTTTA
1 GGAGTTAGTGGGT-AGTTTA
15097475 G
1 G
15097476 TGGGTGCTAA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
18 3 0.16
19 7 0.37
20 9 0.47
ACGTcount: A:0.20, C:0.03, G:0.42, T:0.35
Consensus pattern (19 bp):
GGAGTTAGTGGGTAGTTTA
Found at i:15097949 original size:133 final size:132
Alignment explanation
Indices: 15097708--15098229 Score: 785
Period size: 133 Copynumber: 3.9 Consensus size: 132
15097698 GATCTGCTGT
** ** *
15097708 AATTTGATCTGCTTTACTCCTGCTCAGTAAAGATAAGATCTAGTATGTTTAGCCTGCTCCACTCC
1 AATTTGATCTGCTCCACTCCTGCTCAGCGAAGATAAGATCTAGTA--TATAGCCTGCTCCACTCC
** * * *
15097773 TGCTCAGTGAAGATAAGGCTGATGATTGGAACCTGTTCCATTGCCGATACATGGAGATAAGATTC
64 TGCTCAGTGAAGATAAGGCTGATGGCTGAAATCTGCTCCATTGCCGATACATGGAGATAAGATTC
15097838 ATCAA
129 A-CAA
*
15097843 AATTTGATCTGCTCCGCTCCTGCTCAGCGAAGATAAGATCTAGTATATAGCCTGCTCCACTCCTG
1 AATTTGATCTGCTCCACTCCTGCTCAGCGAAGATAAGATCTAGTATATAGCCTGCTCCACTCCTG
*
15097908 CTCAGTGAAGATAAGACTGATGGCTGAAATCTGCTCCATTGCCGATACATGGAGATAAGATTCAC
66 CTCAGTGAAGATAAGGCTGATGGCTGAAATCTGCTCCATTGCCGATACATGGAGATAAGATTCA-
15097973 CAA
130 CAA
** *
15097976 AATTTGATCTGCTCTGCTCCTGCTCAGCGAAGATAAGATCTAGTATTTAGCCTGCTCCACTCCTG
1 AATTTGATCTGCTCCACTCCTGCTCAGCGAAGATAAGATCTAGTATATAGCCTGCTCCACTCCTG
* *
15098041 CTCAATGAAGATAAGGCTGGTGGCTGAAATCTGCTCCATTGCCGATACATGGAGATAAGACTTGC
66 CTCAGTGAAGATAAGGCTGATGGCTGAAATCTGCTCCATTGCCGATACATGGAGATAAGA-TT-C
15098106 -CAA
129 ACAA
* *
15098109 AATTTGATCTGCTTCACTCCTGCTCAGTGAAGATAAGATCTAGTATATAGCCTGCTCCACTCCTG
1 AATTTGATCTGCTCCACTCCTGCTCAGCGAAGATAAGATCTAGTATATAGCCTGCTCCACTCCTG
* * *
15098174 CTCAGTGAAGATAAGGCTGGTGGTTAAAATCTGCTCCATTGCCGATACATGGAGAT
66 CTCAGTGAAGATAAGGCTGATGGCTGAAATCTGCTCCATTGCCGATACATGGAGAT
15098230 GAGACTCGCT
Statistics
Matches: 359, Mismatches: 26, Indels: 6
0.92 0.07 0.02
Matches are distributed among these distances:
133 316 0.88
134 2 0.01
135 41 0.11
ACGTcount: A:0.27, C:0.23, G:0.21, T:0.29
Consensus pattern (132 bp):
AATTTGATCTGCTCCACTCCTGCTCAGCGAAGATAAGATCTAGTATATAGCCTGCTCCACTCCTG
CTCAGTGAAGATAAGGCTGATGGCTGAAATCTGCTCCATTGCCGATACATGGAGATAAGATTCAC
AA
Found at i:15098320 original size:176 final size:177
Alignment explanation
Indices: 15098069--15098686 Score: 652
Period size: 176 Copynumber: 3.5 Consensus size: 177
15098059 GGTGGCTGAA
* * * **
15098069 ATCTGCTCCATTGCCGATACATGGAGATAAGACTTGCCAAAAT-TT-GATCTGCTTCACTCCTGC
1 ATCTGCTCCATAGCCGATACATGGAGATAAGA-TT--CAAAATCTTCGGTCTGCTTC-CTGCAAC
* * * * * * *
15098132 -TCAGTGAAGATAAGATCTAGTAT-AT-AGCCTGCTC-CACTCCTGCTCAGTGAAGATAAGGCTG
62 TTCAG-AAAGATAAGACCTAGTATCTTCAACCTGCTCTCTCTACT--TCAGAGAAGATAAGGCTG
* * * * * * **
15098193 GTGGTTAAAATCTGCTCCATTGCCGATACATGGAGATGAGACTCGCTATCTTCA
124 ATGGCTAAAATCTGCTCCATAGCCGATACATGGAGATAAGACTCGCCATTTTTT
* * *
15098247 ATCTGCTCCATAGTCAATACATGTAGATAAGATTCAAAATCTTCGGTCTGCTTCCTGCAACTTCA
1 ATCTGCTCCATAGCCGATACATGGAGATAAGATTCAAAATCTTCGGTCTGCTTCCTGCAACTTCA
*
15098312 GAAAGATAAGACCT-GTATCTTCAACCTGCTCTCTGCAACTTCAGAGAA-ATAAGGCTGATGGCT
66 GAAAGATAAGACCTAGTATCTTCAACCTGCTCTCT-CTACTTCAGAGAAGATAAGGCTGATGGCT
*
15098375 AAAATCTGCTCCATAGCCAATACATGGAGATAAGACTCGCCATTTTTT
130 AAAATCTGCTCCATAGCCGATACATGGAGATAAGACTCGCCATTTTTT
* * ** * * *
15098423 ATCTGCTCCATAACCGATATATGGAGATAAGATCTGTAAAT-TTCGGTCTGCTTCTTGCAATTTT
1 ATCTGCTCCATAGCCGATACATGGAGATAAGAT-TCAAAATCTTCGGTCTGCTTCCTGCAACTTC
* * *
15098487 AGAAAGATAATACCTA-TATCTTCAACCTGCTCTCTGTAACTTTAGAG-AGATAAGGCTGATGGC
65 AGAAAGATAAGACCTAGTATCTTCAACCTGCTCTCTCT-ACTTCAGAGAAGATAAGGCTGATGGC
* *
15098550 TAAAATCTGCTCCATAACCGATACATGGAGTTAAGACTCGCCATTTTTT
129 TAAAATCTGCTCCATAGCCGATACATGGAGATAAGACTCGCCATTTTTT
* * *
15098599 ATCTACACCATAGCCGATACATGGAGATAAGA-TCTGAAATCTTCGG-CTTGCTTCCTGCAACTT
1 ATCTGCTCCATAGCCGATACATGGAGATAAGATTC-AAAATCTTCGGTC-TGCTTCCTGCAACTT
* *
15098662 CAGAAAGAAAAAACCT-GTATCTTCA
64 CAGAAAGATAAGACCTAGTATCTTCA
15098687 CCGATGTCGC
Statistics
Matches: 372, Mismatches: 53, Indels: 32
0.81 0.12 0.07
Matches are distributed among these distances:
174 1 0.00
175 16 0.04
176 288 0.77
177 35 0.09
178 29 0.08
179 3 0.01
ACGTcount: A:0.30, C:0.22, G:0.18, T:0.30
Consensus pattern (177 bp):
ATCTGCTCCATAGCCGATACATGGAGATAAGATTCAAAATCTTCGGTCTGCTTCCTGCAACTTCA
GAAAGATAAGACCTAGTATCTTCAACCTGCTCTCTCTACTTCAGAGAAGATAAGGCTGATGGCTA
AAATCTGCTCCATAGCCGATACATGGAGATAAGACTCGCCATTTTTT
Found at i:15102793 original size:19 final size:18
Alignment explanation
Indices: 15102745--15102797 Score: 56
Period size: 19 Copynumber: 2.9 Consensus size: 18
15102735 TGAAAATAAA
15102745 ATGCAAATG-ATGC-AATG
1 ATGC-AATGAATGCAAATG
15102762 ATGCAATGTAATGCAAATG
1 ATGCAATG-AATGCAAATG
*
15102781 CATGGAATGAATGCAAA
1 -ATGCAATGAATGCAAA
15102798 AGAAAGAAAG
Statistics
Matches: 31, Mismatches: 1, Indels: 6
0.82 0.03 0.16
Matches are distributed among these distances:
16 4 0.13
17 4 0.13
18 4 0.13
19 12 0.39
20 7 0.23
ACGTcount: A:0.43, C:0.11, G:0.23, T:0.23
Consensus pattern (18 bp):
ATGCAATGAATGCAAATG
Found at i:15104803 original size:3 final size:3
Alignment explanation
Indices: 15104795--15104921 Score: 88
Period size: 3 Copynumber: 43.0 Consensus size: 3
15104785 TAGTGCCATT
* * * * *
15104795 ATA ATA ATA ATA ATA TTA ATA ATA ATA ACA AT- ATG TTA CTA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
* * *
15104842 ATAA ATAA ATA ATG GTA ATA A-A TATA TATA A-A ATA ATA GTA A-A AGTA
1 AT-A AT-A ATA ATA ATA ATA ATA -ATA -ATA ATA ATA ATA ATA ATA A-TA
15104889 ATA A-A ATA A-A ATA A-A ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
15104922 CTCTTCCCCT
Statistics
Matches: 100, Mismatches: 14, Indels: 20
0.75 0.10 0.15
Matches are distributed among these distances:
2 13 0.13
3 73 0.73
4 14 0.14
ACGTcount: A:0.63, C:0.02, G:0.04, T:0.31
Consensus pattern (3 bp):
ATA
Found at i:15105313 original size:30 final size:30
Alignment explanation
Indices: 15105277--15105362 Score: 118
Period size: 30 Copynumber: 2.9 Consensus size: 30
15105267 CATGGTTGCA
*
15105277 AGTAGGGTAATAGAGTTAGTGGGGTAACTT
1 AGTAGGGTGATAGAGTTAGTGGGGTAACTT
* **
15105307 AGTAGGGTGATAGAGTTAGTGAGGTGGCTT
1 AGTAGGGTGATAGAGTTAGTGGGGTAACTT
* *
15105337 AGTGGGGTGATGGAGTTAGTGGGGTA
1 AGTAGGGTGATAGAGTTAGTGGGGTA
15105363 GTTTAGGAGT
Statistics
Matches: 48, Mismatches: 8, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 48 1.00
ACGTcount: A:0.24, C:0.02, G:0.44, T:0.29
Consensus pattern (30 bp):
AGTAGGGTGATAGAGTTAGTGGGGTAACTT
Found at i:15105386 original size:19 final size:19
Alignment explanation
Indices: 15105348--15105387 Score: 55
Period size: 20 Copynumber: 2.1 Consensus size: 19
15105338 GTGGGGTGAT
15105348 GGAGTTAGTGGGGTAGTTTA
1 GGAGTTAGT-GGGTAGTTTA
15105368 GGAGTTAGT-GGTCAGTTTA
1 GGAGTTAGTGGGT-AGTTTA
15105387 G
1 G
15105388 TGGGTGCTAA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
18 3 0.16
19 7 0.37
20 9 0.47
ACGTcount: A:0.20, C:0.03, G:0.42, T:0.35
Consensus pattern (19 bp):
GGAGTTAGTGGGTAGTTTA
Found at i:15106437 original size:11 final size:9
Alignment explanation
Indices: 15106415--15106466 Score: 68
Period size: 9 Copynumber: 5.7 Consensus size: 9
15106405 TTCACATCCT
15106415 TCTCTCAAC
1 TCTCTCAAC
*
15106424 TCTCTCAAT
1 TCTCTCAAC
15106433 TCTCTCAAAC
1 TCTCTC-AAC
* *
15106443 CCTCTCAAG
1 TCTCTCAAC
15106452 TCTCTCAAC
1 TCTCTCAAC
15106461 TCTCTC
1 TCTCTC
15106467 GTTTTTAATA
Statistics
Matches: 36, Mismatches: 6, Indels: 2
0.82 0.14 0.05
Matches are distributed among these distances:
9 29 0.81
10 7 0.19
ACGTcount: A:0.21, C:0.42, G:0.02, T:0.35
Consensus pattern (9 bp):
TCTCTCAAC
Found at i:15106449 original size:19 final size:19
Alignment explanation
Indices: 15106414--15106459 Score: 67
Period size: 19 Copynumber: 2.5 Consensus size: 19
15106404 ATTCACATCC
*
15106414 TTCTCTC-AACTCTCTCAA
1 TTCTCTCAAACCCTCTCAA
15106432 TTCTCTCAAACCCTCTCAA
1 TTCTCTCAAACCCTCTCAA
*
15106451 GTCTCTCAA
1 TTCTCTCAA
15106460 CTCTCTCGTT
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
18 7 0.28
19 18 0.72
ACGTcount: A:0.24, C:0.39, G:0.02, T:0.35
Consensus pattern (19 bp):
TTCTCTCAAACCCTCTCAA
Found at i:15107054 original size:26 final size:27
Alignment explanation
Indices: 15107010--15107060 Score: 70
Period size: 26 Copynumber: 1.9 Consensus size: 27
15107000 ATTAAAGTTA
*
15107010 AAATATATATAACATAATAA-TAAAGT
1 AAATATATAAAACATAATAAGTAAAGT
15107036 AAATATAATAAAACA-AATAAGTAAA
1 AAATAT-ATAAAACATAATAAGTAAA
15107061 TGAAATAAAG
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
26 11 0.50
27 11 0.50
ACGTcount: A:0.67, C:0.04, G:0.04, T:0.25
Consensus pattern (27 bp):
AAATATATAAAACATAATAAGTAAAGT
Found at i:15107558 original size:19 final size:20
Alignment explanation
Indices: 15107534--15107574 Score: 57
Period size: 19 Copynumber: 2.1 Consensus size: 20
15107524 AGATTTAGGC
*
15107534 AAATATTGAATA-AAAATTG
1 AAATATTCAATATAAAATTG
*
15107553 AAATATTCAATATGAAATTG
1 AAATATTCAATATAAAATTG
15107573 AA
1 AA
15107575 CTGTGTTGTA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
19 11 0.58
20 8 0.42
ACGTcount: A:0.56, C:0.02, G:0.10, T:0.32
Consensus pattern (20 bp):
AAATATTCAATATAAAATTG
Found at i:15110694 original size:20 final size:20
Alignment explanation
Indices: 15110662--15110699 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
15110652 TGTTTCACAT
15110662 TCATATAACTAATATTTATA
1 TCATATAACTAATATTTATA
*
15110682 TCAT-TAACATAATTTTTA
1 TCATATAAC-TAATATTTA
15110700 ACTTAATAAC
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
19 4 0.25
20 12 0.75
ACGTcount: A:0.42, C:0.11, G:0.00, T:0.47
Consensus pattern (20 bp):
TCATATAACTAATATTTATA
Found at i:15111210 original size:18 final size:18
Alignment explanation
Indices: 15111187--15111227 Score: 57
Period size: 18 Copynumber: 2.3 Consensus size: 18
15111177 TACTTTTCTC
15111187 TTTCTA-TCACAATTCCAA
1 TTTCTATTCACAATT-CAA
*
15111205 TTTCTATTCATAATTCAA
1 TTTCTATTCACAATTCAA
15111223 TTTCT
1 TTTCT
15111228 TTTTTTTCTT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
18 14 0.67
19 7 0.33
ACGTcount: A:0.29, C:0.22, G:0.00, T:0.49
Consensus pattern (18 bp):
TTTCTATTCACAATTCAA
Found at i:15111411 original size:39 final size:38
Alignment explanation
Indices: 15111342--15111476 Score: 103
Period size: 39 Copynumber: 3.4 Consensus size: 38
15111332 ACCAATATGG
* *
15111342 CACCCAGTGCCTCATCGGATAGTTCGAAGTAATAGTTGA
1 CACCCAGTGCCTCATCGGCTAG-CCGAAGTAATAGTTGA
* * *
15111381 CACCCAGTGTCTCATCGGCCTAGCCAAAGTAA-AGTTGG
1 CACCCAGTGCCTCATCGG-CTAGCCGAAGTAATAGTTGA
* * * * *
15111419 TACCCAGTACCTCATCGAATCTATCCGAAGAAATTTAG-TGA
1 CACCCAGTGCCTCATCG--GCTAGCCGAAGTAA--TAGTTGA
*
15111460 CACCCAGTGTCTCATCG
1 CACCCAGTGCCTCATCG
15111477 ACTCGAGGTC
Statistics
Matches: 74, Mismatches: 16, Indels: 10
0.74 0.16 0.10
Matches are distributed among these distances:
38 19 0.26
39 34 0.46
40 3 0.04
41 16 0.22
42 2 0.03
ACGTcount: A:0.28, C:0.27, G:0.20, T:0.24
Consensus pattern (38 bp):
CACCCAGTGCCTCATCGGCTAGCCGAAGTAATAGTTGA
Found at i:15120666 original size:26 final size:27
Alignment explanation
Indices: 15120637--15120692 Score: 78
Period size: 27 Copynumber: 2.1 Consensus size: 27
15120627 TGATTTATCA
15120637 TTTTGCATATTAGT-ACTTATTTTATG
1 TTTTGCATATTAGTGACTTATTTTATG
* * *
15120663 TTTTGTATTTTATTGACTTATTTTATG
1 TTTTGCATATTAGTGACTTATTTTATG
15120690 TTT
1 TTT
15120693 AATGTTCTGA
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
26 11 0.42
27 15 0.58
ACGTcount: A:0.20, C:0.05, G:0.11, T:0.64
Consensus pattern (27 bp):
TTTTGCATATTAGTGACTTATTTTATG
Found at i:15123596 original size:27 final size:25
Alignment explanation
Indices: 15123565--15123634 Score: 79
Period size: 27 Copynumber: 2.7 Consensus size: 25
15123555 GTTAAACGGT
15123565 TTTTATACATTATTTATTCCAAAT-
1 TTTTATACATTATTTATTCCAAATA
* *
15123589 TTCTTTTACATATTATTTATTCTAAATA
1 TT-TTATAC--ATTATTTATTCCAAATA
*
15123617 TTTTATACGTTATTTATT
1 TTTTATACATTATTTATT
15123635 TTAAACCATT
Statistics
Matches: 38, Mismatches: 4, Indels: 7
0.78 0.08 0.14
Matches are distributed among these distances:
24 2 0.05
25 14 0.37
27 20 0.53
28 2 0.05
ACGTcount: A:0.30, C:0.10, G:0.01, T:0.59
Consensus pattern (25 bp):
TTTTATACATTATTTATTCCAAATA
Found at i:15123620 original size:25 final size:26
Alignment explanation
Indices: 15123565--15123639 Score: 71
Period size: 25 Copynumber: 2.9 Consensus size: 26
15123555 GTTAAACGGT
* * *
15123565 TTTTATACATTATTTATTCCAAATTTC
1 TTTTACACATTATTTATTCTAAA-TTA
*
15123592 TTTTACATATTATTTATTCTAAA-TA
1 TTTTACACATTATTTATTCTAAATTA
* * *
15123617 TTTTATACGTTATTTATTTTAAA
1 TTTTACACATTATTTATTCTAAA
15123640 CCATTTAATA
Statistics
Matches: 40, Mismatches: 8, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
25 20 0.50
27 20 0.50
ACGTcount: A:0.32, C:0.09, G:0.01, T:0.57
Consensus pattern (26 bp):
TTTTACACATTATTTATTCTAAATTA
Found at i:15123894 original size:15 final size:15
Alignment explanation
Indices: 15123800--15123895 Score: 58
Period size: 16 Copynumber: 6.3 Consensus size: 15
15123790 ATTTATATAT
15123800 TTTTATATATTATTTA
1 TTTTATATATTA-TTA
*
15123816 TTTTAAAT-TTATT-
1 TTTTATATATTATTA
*
15123829 TTTTACATATTATTCA
1 TTTTATATATTATT-A
* *
15123845 TTTTAGACT-TT-CTA
1 TTTTATA-TATTATTA
*
15123859 TGTTT-TATATTAAATTG
1 T-TTTATATATT--ATTA
15123876 TTTTATATATTATTA
1 TTTTATATATTATTA
15123891 TTTTA
1 TTTTA
15123896 AGTTGCATTA
Statistics
Matches: 62, Mismatches: 8, Indels: 21
0.68 0.09 0.23
Matches are distributed among these distances:
13 8 0.13
14 12 0.19
15 15 0.24
16 18 0.29
17 9 0.15
ACGTcount: A:0.29, C:0.04, G:0.03, T:0.64
Consensus pattern (15 bp):
TTTTATATATTATTA
Found at i:15123919 original size:45 final size:46
Alignment explanation
Indices: 15123861--15123992 Score: 124
Period size: 45 Copynumber: 2.8 Consensus size: 46
15123851 ACTTTCTATG
*
15123861 TTTTATATTAAATTGTTTTATATATTATTATTTTAAG-TTGCATTA
1 TTTTATTTTAAATTGTTTTATATATTATTATTTTAAGATTGCATTA
* * * *
15123906 TTTTATTTTAAATTATTTTGTGTATTAATTATTTT-AGATTGTATTA
1 TTTTATTTTAAATTGTTTTATATATT-ATTATTTTAAGATTGCATTA
* * *
15123952 TACTATTCACTTTAAATTGTTTTTTATAATATCTATTTTAA
1 T--T-TT-ATTTTAAATTGTTTTATATATTAT-TATTTTAA
15123993 ACTTATTTTT
Statistics
Matches: 69, Mismatches: 10, Indels: 10
0.78 0.11 0.11
Matches are distributed among these distances:
45 24 0.35
46 16 0.23
48 1 0.01
49 4 0.06
50 23 0.33
51 1 0.01
ACGTcount: A:0.30, C:0.04, G:0.06, T:0.60
Consensus pattern (46 bp):
TTTTATTTTAAATTGTTTTATATATTATTATTTTAAGATTGCATTA
Found at i:15125271 original size:18 final size:18
Alignment explanation
Indices: 15125250--15125331 Score: 74
Period size: 18 Copynumber: 4.6 Consensus size: 18
15125240 TAACATTCAA
*
15125250 TTATTCAGTAGCAATTAG
1 TTATTCAGTAGCAATCAG
* ** *
15125268 TTATTCAGGAATAATCAT
1 TTATTCAGTAGCAATCAG
**
15125286 TTGCTCAGTAGCAATCAG
1 TTATTCAGTAGCAATCAG
* * *
15125304 TTATTCAGTAACGATCAA
1 TTATTCAGTAGCAATCAG
15125322 TTATTCAGTA
1 TTATTCAGTA
15125332 ATAGCTAGTC
Statistics
Matches: 48, Mismatches: 16, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
18 48 1.00
ACGTcount: A:0.34, C:0.15, G:0.15, T:0.37
Consensus pattern (18 bp):
TTATTCAGTAGCAATCAG
Found at i:15125330 original size:36 final size:35
Alignment explanation
Indices: 15125238--15125331 Score: 107
Period size: 36 Copynumber: 2.6 Consensus size: 35
15125228 AGTTTCATTT
*
15125238 AGTAACATTCAATTATTCAGTAGCAATTAGTTATTC
1 AGTAACA-TCAATTATTCAGTAGCAATCAGTTATTC
* * * **
15125274 AGGAATAATCATTTGCTCAGTAGCAATCAGTTATTC
1 AGTAA-CATCAATTATTCAGTAGCAATCAGTTATTC
15125310 AGTAACGATCAATTATTCAGTA
1 AGTAAC-ATCAATTATTCAGTA
15125332 ATAGCTAGTC
Statistics
Matches: 45, Mismatches: 11, Indels: 4
0.75 0.18 0.07
Matches are distributed among these distances:
36 44 0.98
37 1 0.02
ACGTcount: A:0.36, C:0.15, G:0.14, T:0.35
Consensus pattern (35 bp):
AGTAACATCAATTATTCAGTAGCAATCAGTTATTC
Found at i:15125582 original size:44 final size:44
Alignment explanation
Indices: 15125513--15125604 Score: 116
Period size: 44 Copynumber: 2.1 Consensus size: 44
15125503 CCGAAGTAAT
15125513 AGTAACAGTACGACACACAAGGTGCCTCATCGAATCGAA-GTCGA
1 AGTAACAGTACGACACACAAGGTGCCTCATCGAATC-AAGGTCGA
** * *
15125557 AGTAACAGTACGACACTTATA-GTGCCTCATTGACTCAAGGTCGA
1 AGTAACAGTACGACACACA-AGGTGCCTCATCGAATCAAGGTCGA
15125601 AGTA
1 AGTA
15125605 TCCCTAAACA
Statistics
Matches: 42, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
43 2 0.05
44 39 0.93
45 1 0.02
ACGTcount: A:0.35, C:0.23, G:0.22, T:0.21
Consensus pattern (44 bp):
AGTAACAGTACGACACACAAGGTGCCTCATCGAATCAAGGTCGA
Found at i:15126297 original size:21 final size:22
Alignment explanation
Indices: 15126267--15126312 Score: 60
Period size: 21 Copynumber: 2.1 Consensus size: 22
15126257 AAAACCTCAA
*
15126267 TTTCTCCCTTTTTCTT-TCTTTC
1 TTTCTCCCTTTCTCTTCT-TTTC
15126289 TTTC-CCCTTTCTCTTCTTTTC
1 TTTCTCCCTTTCTCTTCTTTTC
15126310 TTT
1 TTT
15126313 GTTTTCGTTT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
21 17 0.77
22 5 0.23
ACGTcount: A:0.00, C:0.33, G:0.00, T:0.67
Consensus pattern (22 bp):
TTTCTCCCTTTCTCTTCTTTTC
Found at i:15126354 original size:11 final size:10
Alignment explanation
Indices: 15126336--15126372 Score: 51
Period size: 10 Copynumber: 3.8 Consensus size: 10
15126326 ATTCTGTTAC
15126336 TTTATTTCTT
1 TTTATTTCTT
15126346 TTCTATTTC--
1 TT-TATTTCTT
15126355 TTTATTTCTT
1 TTTATTTCTT
15126365 TTTATTTC
1 TTTATTTC
15126373 ATTTGTTTCA
Statistics
Matches: 24, Mismatches: 0, Indels: 6
0.80 0.00 0.20
Matches are distributed among these distances:
8 6 0.25
9 2 0.08
10 10 0.42
11 6 0.25
ACGTcount: A:0.11, C:0.14, G:0.00, T:0.76
Consensus pattern (10 bp):
TTTATTTCTT
Found at i:15126381 original size:19 final size:19
Alignment explanation
Indices: 15126335--15126372 Score: 69
Period size: 19 Copynumber: 2.1 Consensus size: 19
15126325 TATTCTGTTA
15126335 CTTTATTTCTTTTCTATTT
1 CTTTATTTCTTTTCTATTT
15126354 CTTTATTTCTTTT-TATTT
1 CTTTATTTCTTTTCTATTT
15126372 C
1 C
15126373 ATTTGTTTCA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
18 6 0.32
19 13 0.68
ACGTcount: A:0.11, C:0.16, G:0.00, T:0.74
Consensus pattern (19 bp):
CTTTATTTCTTTTCTATTT
Found at i:15126545 original size:5 final size:5
Alignment explanation
Indices: 15126535--15126587 Score: 106
Period size: 5 Copynumber: 10.6 Consensus size: 5
15126525 ATATTACATA
15126535 ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT
1 ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT
15126585 ATA
1 ATA
15126588 TTTAAAATTA
Statistics
Matches: 48, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 48 1.00
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (5 bp):
ATAAT
Found at i:15126717 original size:20 final size:21
Alignment explanation
Indices: 15126670--15126721 Score: 63
Period size: 20 Copynumber: 2.5 Consensus size: 21
15126660 AATCCTTATA
*
15126670 CCTAATTAACCTTAATTTAAG
1 CCTAATTAACCTTAATTAAAG
*
15126691 -CTAAATTCA-CTTAATTAAAG
1 CCT-AATTAACCTTAATTAAAG
15126711 CCTAATTAACC
1 CCTAATTAACC
15126722 ACTCGATTAA
Statistics
Matches: 25, Mismatches: 3, Indels: 6
0.74 0.09 0.18
Matches are distributed among these distances:
20 17 0.68
21 8 0.32
ACGTcount: A:0.40, C:0.21, G:0.04, T:0.35
Consensus pattern (21 bp):
CCTAATTAACCTTAATTAAAG
Found at i:15126942 original size:2 final size:2
Alignment explanation
Indices: 15126935--15126966 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
15126925 GATTTTAAAG
15126935 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
15126967 TTGGTTTAGA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:15130828 original size:29 final size:30
Alignment explanation
Indices: 15130779--15130848 Score: 79
Period size: 29 Copynumber: 2.3 Consensus size: 30
15130769 AAAATTGTAT
*
15130779 ATGAACTTTAATTTAATGTGTAATGTTATAC
1 ATGAATTTTAATTT-ATGTGTAATGTTATAC
* * *
15130810 ATGAATTTTAATTT-TGTGTGATTTTATAT
1 ATGAATTTTAATTTATGTGTAATGTTATAC
15130839 ATGAAATTTT
1 ATG-AATTTT
15130849 GGTTTGGTTC
Statistics
Matches: 34, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
29 15 0.44
30 6 0.18
31 13 0.38
ACGTcount: A:0.33, C:0.03, G:0.13, T:0.51
Consensus pattern (30 bp):
ATGAATTTTAATTTATGTGTAATGTTATAC
Found at i:15139062 original size:5 final size:5
Alignment explanation
Indices: 15139052--15139077 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
15139042 ATTTTAATTA
15139052 AAAAT AAAAT AAAAT AAAAT AAAAT A
1 AAAAT AAAAT AAAAT AAAAT AAAAT A
15139078 TCCTAACCTA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (5 bp):
AAAAT
Found at i:15145524 original size:38 final size:41
Alignment explanation
Indices: 15145472--15145569 Score: 123
Period size: 40 Copynumber: 2.5 Consensus size: 41
15145462 CAAAAATTGT
* * *
15145472 AAAACATAGAGCAATAGCGGCGTTTTTGGT-TACGCCGCTA
1 AAAACATAGAGCAATAGCGGCATTTTTAGTAAACGCCGCTA
*
15145512 AAAACA-A-AGCAATAGTGGCATTTTTAGTAAAACGCCGCTA
1 AAAACATAGAGCAATAGCGGCATTTTTAGT-AAACGCCGCTA
15145552 AAAA-ATAGAGCAATAGCG
1 AAAACATAGAGCAATAGCG
15145570 ACGCTTTCGG
Statistics
Matches: 49, Mismatches: 5, Indels: 7
0.80 0.08 0.11
Matches are distributed among these distances:
38 18 0.37
39 2 0.04
40 20 0.41
41 9 0.18
ACGTcount: A:0.40, C:0.17, G:0.21, T:0.21
Consensus pattern (41 bp):
AAAACATAGAGCAATAGCGGCATTTTTAGTAAACGCCGCTA
Found at i:15145583 original size:41 final size:41
Alignment explanation
Indices: 15145503--15145759 Score: 291
Period size: 41 Copynumber: 6.3 Consensus size: 41
15145493 GTTTTTGGTT
* * * ** **
15145503 ACGCCGCTAAAAA-CAAAGCAATAGTGGCATTTTTAGTAAA
1 ACGCCGCTAAAAACCAGAGCATTAGCGGCGCTTTCGGTAAA
** * *
15145543 ACGCCGCTAAAAAATAGAGCAATAGCGACGCTTTCGGTAAA
1 ACGCCGCTAAAAACCAGAGCATTAGCGGCGCTTTCGGTAAA
** *
15145584 ACGCCATTAAAAACCAGAGAATTAGCGGCGCTTTCGGTAAA
1 ACGCCGCTAAAAACCAGAGCATTAGCGGCGCTTTCGGTAAA
* * * *
15145625 ACGCCTCTAAAAACTAGAGCATTAGCGACGCTTTCGGTCAA
1 ACGCCGCTAAAAACCAGAGCATTAGCGGCGCTTTCGGTAAA
* * ** *
15145666 ACGCCTCTAAAAACCAGAGCATTAGCGGTGCTTTTAGCAAA
1 ACGCCGCTAAAAACCAGAGCATTAGCGGCGCTTTCGGTAAA
*
15145707 ACGCCGTTAAAAACCAGAGCATTAGCGGCGCTTTCGGTAAA
1 ACGCCGCTAAAAACCAGAGCATTAGCGGCGCTTTCGGTAAA
15145748 ACGCCGCTAAAA
1 ACGCCGCTAAAA
15145760 GTCATATAAC
Statistics
Matches: 181, Mismatches: 35, Indels: 1
0.83 0.16 0.00
Matches are distributed among these distances:
40 13 0.07
41 168 0.93
ACGTcount: A:0.36, C:0.23, G:0.21, T:0.20
Consensus pattern (41 bp):
ACGCCGCTAAAAACCAGAGCATTAGCGGCGCTTTCGGTAAA
Found at i:15145877 original size:54 final size:55
Alignment explanation
Indices: 15145772--15145885 Score: 140
Period size: 54 Copynumber: 2.1 Consensus size: 55
15145762 CATATAACCC
* * * * *
15145772 CTAAAACCCTAAACCCTAAAAATATCATAAACACTGATCTATAGCCTCTAAAACA
1 CTAAAACCCTAAACCCTAAAAATACCATAAACACTAAACTATAACCCCTAAAACA
* * * *
15145827 CTAAACCCCTAAACCCTAAAAA-ACCCTAACCACTAAACTATAACCCCTAAAACC
1 CTAAAACCCTAAACCCTAAAAATACCATAAACACTAAACTATAACCCCTAAAACA
15145881 CTAAA
1 CTAAA
15145886 TCCCAAAAAA
Statistics
Matches: 50, Mismatches: 9, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
54 29 0.58
55 21 0.42
ACGTcount: A:0.47, C:0.32, G:0.02, T:0.18
Consensus pattern (55 bp):
CTAAAACCCTAAACCCTAAAAATACCATAAACACTAAACTATAACCCCTAAAACA
Found at i:15146989 original size:7 final size:7
Alignment explanation
Indices: 15146972--15147009 Score: 51
Period size: 8 Copynumber: 5.3 Consensus size: 7
15146962 TTCATTTAGT
15146972 TTAAAAA
1 TTAAAAA
15146979 -TAAAAA
1 TTAAAAA
15146985 TTAAAAAA
1 TT-AAAAA
15146993 TTAAAAA
1 TTAAAAA
15147000 CTTAAAAA
1 -TTAAAAA
15147008 TT
1 TT
15147010 TAATATTTAA
Statistics
Matches: 28, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
6 6 0.21
7 8 0.29
8 14 0.50
ACGTcount: A:0.68, C:0.03, G:0.00, T:0.29
Consensus pattern (7 bp):
TTAAAAA
Found at i:15156276 original size:23 final size:23
Alignment explanation
Indices: 15156246--15156462 Score: 124
Period size: 23 Copynumber: 9.4 Consensus size: 23
15156236 TGGCTGCTGT
* *
15156246 TGTTTAAATGTTGCAAAATGAAG
1 TGTTTAAATGCTGCAAATTGAAG
**
15156269 TGTTTAAATGCTATAAATTGAAG
1 TGTTTAAATGCTGCAAATTGAAG
* * *
15156292 CGTTTAAATGTTGTAAATTGAAG
1 TGTTTAAATGCTGCAAATTGAAG
* *
15156315 TGTTTAAGTACTGCAAATTGAAAG
1 TGTTTAAATGCTGCAAATTG-AAG
** *
15156339 TGTTTAGTTGCTGGAAATTG-AG
1 TGTTTAAATGCTGCAAATTGAAG
*
15156361 ATGTTT-TAT-C-GCTATAATTG-AG
1 -TGTTTAAATGCTGC-A-AATTGAAG
* * **
15156383 TTGTATAAATGTTGTTAATTG-AG
1 -TGTTTAAATGCTGCAAATTGAAG
* *
15156406 ATG-TTAAAGTGCTGCAAAATGAAA
1 -TGTTTAAA-TGCTGCAAATTGAAG
* *
15156430 TGTTTAAATGATGTAAATTGAAG
1 TGTTTAAATGCTGCAAATTGAAG
*
15156453 TGCTTAAATG
1 TGTTTAAATG
15156463 TTATACAAGA
Statistics
Matches: 147, Mismatches: 37, Indels: 20
0.72 0.18 0.10
Matches are distributed among these distances:
20 1 0.01
21 2 0.01
22 18 0.12
23 100 0.68
24 25 0.17
25 1 0.01
ACGTcount: A:0.35, C:0.05, G:0.22, T:0.38
Consensus pattern (23 bp):
TGTTTAAATGCTGCAAATTGAAG
Found at i:15156333 original size:46 final size:46
Alignment explanation
Indices: 15156246--15156459 Score: 161
Period size: 46 Copynumber: 4.7 Consensus size: 46
15156236 TGGCTGCTGT
* * * **
15156246 TGTTTAAATGTTGCAAAATGAAGTGTTTAAATGCTATAAATTGAAG
1 TGTTTAAATGTTGTAAATTGAAGTGTTTAAGTGCTGCAAATTGAAG
* *
15156292 CGTTTAAATGTTGTAAATTGAAGTGTTTAAGTACTGCAAATTGAAAG
1 TGTTTAAATGTTGTAAATTGAAGTGTTTAAGTGCTGCAAATTG-AAG
** * * *
15156339 TGTTTAGTTGCTGGAAATTG-AGATGTTTTA-T-C-GCTATAATTG-AG
1 TGTTTAAATGTTGTAAATTGAAG-TGTTTAAGTGCTGC-A-AATTGAAG
* * * * *
15156383 TTGTATAAATGTTGTTAATTG-AGATGTTAAAGTGCTGCAAAATGAAA
1 -TGTTTAAATGTTGTAAATTGAAG-TGTTTAAGTGCTGCAAATTGAAG
* *
15156430 TGTTTAAATGATGTAAATTGAAGTGCTTAA
1 TGTTTAAATGTTGTAAATTGAAGTGTTTAA
15156460 ATGTTATACA
Statistics
Matches: 130, Mismatches: 28, Indels: 20
0.73 0.16 0.11
Matches are distributed among these distances:
44 4 0.03
45 24 0.18
46 71 0.55
47 29 0.22
48 2 0.02
ACGTcount: A:0.35, C:0.05, G:0.21, T:0.38
Consensus pattern (46 bp):
TGTTTAAATGTTGTAAATTGAAGTGTTTAAGTGCTGCAAATTGAAG
Found at i:15157428 original size:23 final size:23
Alignment explanation
Indices: 15157396--15158699 Score: 902
Period size: 23 Copynumber: 57.0 Consensus size: 23
15157386 TAGTAGTAAA
*
15157396 TGCTGCAAATTGAAGTGTTTAAG
1 TGCTGTAAATTGAAGTGTTTAAG
* * *
15157419 TACTGCAAATTGAAGTGTTTAAT
1 TGCTGTAAATTGAAGTGTTTAAG
* *
15157442 TGCTGGAAATTG-AGATGTTTTA-
1 TGCTGTAAATTGAAG-TGTTTAAG
* * *
15157464 TCGCTGT-AATTGAGGTGTATAAA
1 T-GCTGTAAATTGAAGTGTTTAAG
* * * *
15157487 TGTTGTTAATTGAAATGTTAAAG
1 TGCTGTAAATTGAAGTGTTTAAG
*
15157510 TGCTGCAAATTGAAGTGGTTTAA-
1 TGCTGTAAATTGAAGT-GTTTAAG
* *
15157533 TGCTGTAAATTGAAGTGTTAAAC
1 TGCTGTAAATTGAAGTGTTTAAG
**
15157556 TGCTACAAATTGAAGTGTTTGAA-
1 TGCTGTAAATTGAAGTGTTT-AAG
*
15157579 TGCTGTAAATTGAAGTGTTTAAA
1 TGCTGTAAATTGAAGTGTTTAAG
*
15157602 TGCTGTAAATTGAAGTGCTTAAG
1 TGCTGTAAATTGAAGTGTTTAAG
* * *
15157625 TGTTGCAAATTGAAGTGTTTAAA
1 TGCTGTAAATTGAAGTGTTTAAG
* *
15157648 TACTGCAAATTGAAGTGTTT-AG
1 TGCTGTAAATTGAAGTGTTTAAG
* * *
15157670 TTGCTGGACATTG-AGATGTTTTA-
1 -TGCTGTAAATTGAAG-TGTTTAAG
* * *
15157693 TCGCTGT-AATTGAGGTGTATAAA
1 T-GCTGTAAATTGAAGTGTTTAAG
* * * *
15157716 TGTTGTTAATTGATGTGTTAAAG
1 TGCTGTAAATTGAAGTGTTTAAG
*
15157739 TGCTGCAAATTGAAGTGTTTTAA-
1 TGCTGTAAATTGAAGTG-TTTAAG
* *
15157762 TGCTGTAAATTGAAGTGTTAAAC
1 TGCTGTAAATTGAAGTGTTTAAG
**
15157785 TGCTAAAAATTGAAGTGTTTGAA-
1 TGCTGTAAATTGAAGTGTTT-AAG
* *
15157808 TGCTGTAAATTGAAATGTTTAAA
1 TGCTGTAAATTGAAGTGTTTAAG
* *
15157831 TGCTGTAAATTGAAGTGCTTAAA
1 TGCTGTAAATTGAAGTGTTTAAG
* *
15157854 TGTTGCAAATTGAAGTGTTT-AG
1 TGCTGTAAATTGAAGTGTTTAAG
* * *
15157876 TTGCTGGACATTG-AGATGTTTTA-
1 -TGCTGTAAATTGAAG-TGTTTAAG
* *
15157899 TCGCTGT-AATT-AAGGTGTATAAA
1 T-GCTGTAAATTGAA-GTGTTTAAG
* * * *
15157922 TGTTGTTAATTGAGGTGTTAAAG
1 TGCTGTAAATTGAAGTGTTTAAG
*
15157945 TGCTGGAAATTGAAGTGTTTGAA-
1 TGCTGTAAATTGAAGTGTTT-AAG
*
15157968 TGCTGTAAATTGAAGTGTTTAAA
1 TGCTGTAAATTGAAGTGTTTAAG
* * * *
15157991 TGCCGTAAATTAAAGTGCTTAAA
1 TGCTGTAAATTGAAGTGTTTAAG
* *
15158014 TGTTGCAAATTGAAGTGTTTAAG
1 TGCTGTAAATTGAAGTGTTTAAG
* **
15158037 TACTACAAATTGAAGTGTTT-AG
1 TGCTGTAAATTGAAGTGTTTAAG
* *
15158059 TTGCTAG-ACATTG-AGATGTTTTA-
1 -TGCT-GTAAATTGAAG-TGTTTAAG
* * * *
15158082 TCGCTAT-AATTGAGGTGTATAAA
1 T-GCTGTAAATTGAAGTGTTTAAG
* * *
15158105 TGTTGTTAATTG-AGATGTTAAAG
1 TGCTGTAAATTGAAG-TGTTTAAG
* * *
15158128 TGCTGCAAATTGAAGTGCTTAAA
1 TGCTGTAAATTGAAGTGTTTAAG
*
15158151 TGCTGTAAATTGAAGTGTTAAAG
1 TGCTGTAAATTGAAGTGTTTAAG
*
15158174 TGCTGTAAATTGAAGTGTTAAAG
1 TGCTGTAAATTGAAGTGTTTAAG
*
15158197 TGCTGTAAATTGAAGTGTTGGAA-
1 TGCTGTAAATTGAAGTGTT-TAAG
* *
15158220 TGTTGTAAATTGAAGTGTTTAAA
1 TGCTGTAAATTGAAGTGTTTAAG
* * * *
15158243 TGCCGTAAATTAAAGTGCTTAAA
1 TGCTGTAAATTGAAGTGTTTAAG
* *
15158266 TGTTGCAAATTGAAGTGTTTAAG
1 TGCTGTAAATTGAAGTGTTTAAG
* **
15158289 TACTACAAATTGAAGTGTTT-AG
1 TGCTGTAAATTGAAGTGTTTAAG
* * *
15158311 TTGCTGGACATTG-AGATGTTTTA-
1 -TGCTGTAAATTGAAG-TGTTTAAG
* * *
15158334 TCGCTAT-AATTG-AG-GTGTAAA
1 T-GCTGTAAATTGAAGTGTTTAAG
* * *
15158355 TGTTGTTAATTG-AGATGTTAAAG
1 TGCTGTAAATTGAAG-TGTTTAAG
*
15158378 TGCTGTAAATTGAAGTGTTAAAG
1 TGCTGTAAATTGAAGTGTTTAAG
* *
15158401 TGCTGCAAATTGAACTGTTTGAA-
1 TGCTGTAAATTGAAGTGTTT-AAG
*
15158424 TGCTGTAAATTGAAGTGTTTAAA
1 TGCTGTAAATTGAAGTGTTTAAG
* * *
15158447 TGGTGTAAATTGAAGTGCTTAAA
1 TGCTGTAAATTGAAGTGTTTAAG
* *
15158470 TGTTGCAAATTGAAGTGTTTAAG
1 TGCTGTAAATTGAAGTGTTTAAG
*
15158493 TACTGTAAATTGAAGTGTTT-AG
1 TGCTGTAAATTGAAGTGTTTAAG
* * *
15158515 TTGCTGGACATTG-AGATGTTTTA-
1 -TGCTGTAAATTGAAG-TGTTTAAG
* * *
15158538 TCGCTGT-AATTGAGGTGTATAAA
1 T-GCTGTAAATTGAAGTGTTTAAG
* * *
15158561 TGTTGTTAATTG-AGATGTTAAAG
1 TGCTGTAAATTGAAG-TGTTTAAG
*
15158584 TGCTGTAAATTGAAGTGTTAAAG
1 TGCTGTAAATTGAAGTGTTTAAG
*
15158607 TGCTGCAAATTGAAGTGTTTGAA-
1 TGCTGTAAATTGAAGTGTTT-AAG
* * *
15158630 TGCTGCAAATTCAAGTGTTTAAA
1 TGCTGTAAATTGAAGTGTTTAAG
* *
15158653 TGCTGTAAATTGAAGTGCTTAAA
1 TGCTGTAAATTGAAGTGTTTAAG
* * *
15158676 TGTTGCAAATTAAAGTGTTTAAG
1 TGCTGTAAATTGAAGTGTTTAAG
15158699 T
1 T
15158700 ACTTATTTTG
Statistics
Matches: 1021, Mismatches: 194, Indels: 132
0.76 0.14 0.10
Matches are distributed among these distances:
20 7 0.01
21 8 0.01
22 120 0.12
23 853 0.84
24 33 0.03
ACGTcount: A:0.32, C:0.07, G:0.24, T:0.38
Consensus pattern (23 bp):
TGCTGTAAATTGAAGTGTTTAAG
Found at i:15157452 original size:46 final size:46
Alignment explanation
Indices: 15157392--15158697 Score: 1005
Period size: 46 Copynumber: 28.6 Consensus size: 46
15157382 ATATTAGTAG
* * * *
15157392 TAAATGCTGCAAATTGAAGTGTTTAAGTACTGCAAATTGAAGTGTT
1 TAAATGCTGTAAATTGAAGTGTTTAAATGCTGTAAATTGAAGTGTT
* * * * *
15157438 TAATTGCTGGAAATTG-AGATGTTT-TATCGCTGT-AATTGAGGTGTA
1 TAAATGCTGTAAATTGAAG-TGTTTAAAT-GCTGTAAATTGAAGTGTT
* * * *
15157483 TAAATGTTGTTAATTGAAATG-TTAAAGTGCTGCAAATTGAAGTGGTT
1 TAAATGCTGTAAATTGAAGTGTTTAAA-TGCTGTAAATTGAAGT-GTT
**
15157530 T-AATGCTGTAAATTGAAGTG-TTAAACTGCTACAAATTGAAGTGTT
1 TAAATGCTGTAAATTGAAGTGTTTAAA-TGCTGTAAATTGAAGTGTT
* *
15157575 TGAATGCTGTAAATTGAAGTGTTTAAATGCTGTAAATTGAAGTGCT
1 TAAATGCTGTAAATTGAAGTGTTTAAATGCTGTAAATTGAAGTGTT
* * * * *
15157621 TAAGTGTTGCAAATTGAAGTGTTTAAATACTGCAAATTGAAGTGTT
1 TAAATGCTGTAAATTGAAGTGTTTAAATGCTGTAAATTGAAGTGTT
** * * * * *
15157667 TAGTTGCTGGACATTG-AGATGTTT-TATCGCTGT-AATTGAGGTGTA
1 TAAATGCTGTAAATTGAAG-TGTTTAAAT-GCTGTAAATTGAAGTGTT
* * * *
15157712 TAAATGTTGTTAATTGATGTG-TTAAAGTGCTGCAAATTGAAGTGTT
1 TAAATGCTGTAAATTGAAGTGTTTAAA-TGCTGTAAATTGAAGTGTT
* **
15157758 TTAATGCTGTAAATTGAAGTG-TTAAACTGCTAAAAATTGAAGTGTT
1 TAAATGCTGTAAATTGAAGTGTTTAAA-TGCTGTAAATTGAAGTGTT
* * *
15157804 TGAATGCTGTAAATTGAAATGTTTAAATGCTGTAAATTGAAGTGCT
1 TAAATGCTGTAAATTGAAGTGTTTAAATGCTGTAAATTGAAGTGTT
* * ** * *
15157850 TAAATGTTGCAAATTGAAGTGTTTAGTTGCTGGACATTG-AGATGTT
1 TAAATGCTGTAAATTGAAGTGTTTAAATGCTGTAAATTGAAG-TGTT
* * * * *
15157896 T-TATCGCTGT-AATT-AAGGTGTATAAATGTTGTTAATTGAGGTG-T
1 TAAAT-GCTGTAAATTGAA-GTGTTTAAATGCTGTAAATTGAAGTGTT
* *
15157940 TAAAGTGCTGGAAATTGAAGTGTTTGAATGCTGTAAATTGAAGTGTT
1 TAAA-TGCTGTAAATTGAAGTGTTTAAATGCTGTAAATTGAAGTGTT
* * * * *
15157987 TAAATGCCGTAAATTAAAGTGCTTAAATGTTGCAAATTGAAGTGTT
1 TAAATGCTGTAAATTGAAGTGTTTAAATGCTGTAAATTGAAGTGTT
* * ** ** *
15158033 TAAGTACTACAAATTGAAGTGTTTAGTTGCTAG-ACATTG-AGATGTT
1 TAAATGCTGTAAATTGAAGTGTTTAAATGCT-GTAAATTGAAG-TGTT
* * * * * *
15158079 T-TATCGCTAT-AATTGAGGTGTATAAATGTTGTTAATTG-AGATG-T
1 TAAAT-GCTGTAAATTGAAGTGTTTAAATGCTGTAAATTGAAG-TGTT
* *
15158123 TAAAGTGCTGCAAATTGAAGTGCTTAAATGCTGTAAATTGAAGTG-T
1 TAAA-TGCTGTAAATTGAAGTGTTTAAATGCTGTAAATTGAAGTGTT
15158169 TAAAGTGCTGTAAATTGAAGTG-TTAAAGTGCTGTAAATTGAAGTGTT
1 TAAA-TGCTGTAAATTGAAGTGTTTAAA-TGCTGTAAATTGAAGTGTT
** * * * *
15158216 GGAATGTTGTAAATTGAAGTGTTTAAATGCCGTAAATTAAAGTGCT
1 TAAATGCTGTAAATTGAAGTGTTTAAATGCTGTAAATTGAAGTGTT
* * * * **
15158262 TAAATGTTGCAAATTGAAGTGTTTAAGTACTACAAATTGAAGTGTT
1 TAAATGCTGTAAATTGAAGTGTTTAAATGCTGTAAATTGAAGTGTT
** * * * * *
15158308 TAGTTGCTGGACATTG-AGATGTTT-TATCGCTAT-AATTG-AG-GTG
1 TAAATGCTGTAAATTGAAG-TGTTTAAAT-GCTGTAAATTGAAGTGTT
* *
15158351 TAAATGTTGTTAATTG-AGATG-TTAAAGTGCTGTAAATTGAAGTG-T
1 TAAATGCTGTAAATTGAAG-TGTTTAAA-TGCTGTAAATTGAAGTGTT
* * *
15158396 TAAAGTGCTGCAAATTGAACTGTTTGAATGCTGTAAATTGAAGTGTT
1 TAAA-TGCTGTAAATTGAAGTGTTTAAATGCTGTAAATTGAAGTGTT
* * * *
15158443 TAAATGGTGTAAATTGAAGTGCTTAAATGTTGCAAATTGAAGTGTT
1 TAAATGCTGTAAATTGAAGTGTTTAAATGCTGTAAATTGAAGTGTT
* * ** * *
15158489 TAAGTACTGTAAATTGAAGTGTTTAGTTGCTGGACATTG-AGATGTT
1 TAAATGCTGTAAATTGAAGTGTTTAAATGCTGTAAATTGAAG-TGTT
* * * * *
15158535 T-TATCGCTGT-AATTGAGGTGTATAAATGTTGTTAATTG-AGATG-T
1 TAAAT-GCTGTAAATTGAAGTGTTTAAATGCTGTAAATTGAAG-TGTT
*
15158579 TAAAGTGCTGTAAATTGAAGTG-TTAAAGTGCTGCAAATTGAAGTGTT
1 TAAA-TGCTGTAAATTGAAGTGTTTAAA-TGCTGTAAATTGAAGTGTT
* * * *
15158626 TGAATGCTGCAAATTCAAGTGTTTAAATGCTGTAAATTGAAGTGCT
1 TAAATGCTGTAAATTGAAGTGTTTAAATGCTGTAAATTGAAGTGTT
* * *
15158672 TAAATGTTGCAAATTAAAGTGTTTAA
1 TAAATGCTGTAAATTGAAGTGTTTAA
15158698 GTACTTATTT
Statistics
Matches: 993, Mismatches: 211, Indels: 112
0.75 0.16 0.09
Matches are distributed among these distances:
42 2 0.00
43 22 0.02
44 21 0.02
45 184 0.19
46 712 0.72
47 52 0.05
ACGTcount: A:0.32, C:0.07, G:0.24, T:0.38
Consensus pattern (46 bp):
TAAATGCTGTAAATTGAAGTGTTTAAATGCTGTAAATTGAAGTGTT
Found at i:15157751 original size:206 final size:203
Alignment explanation
Indices: 15157394--15158696 Score: 1232
Period size: 206 Copynumber: 6.3 Consensus size: 203
15157384 ATTAGTAGTA
* * * * * * * *
15157394 AATGCTGCAAATTGAAGTGTTTAAGTACTGCAAATTGAAGTGTTTAATTGCTGGAAATTG-AGAT
1 AATGCTGTAAATTGAAGTGTTTAAATGCTGTAAATTGAAGTGCTTAAATGTTGCAAATTGAAG-T
* * ** * * *
15157458 GTTTTA-TCGCTGTAATTGAGGTGTATAAATGTTGTTAATTGAAATGTTAAAGTGCTGCAAATTG
65 G-TTTAGTTGCTGTAATTGAGATGTATTTATGCTG-TAATTGAGATGTTAAA-TGCTGCTAATTG
* * * ** *
15157522 AAGTGGTTTAATGCTGTAAATTGAAGTGTTAAACTGCTACAAATTGAAGTGTTTGAA-TGCTGTA
127 AGGT-GTTAAATGCTGTAAATTGAAGTGTTAAAGTGCTGTAAATTGAAGTG-TTAAAGTGCTGTA
*
15157586 AATTGAAGTGTTTA
190 AATTGAAGTGTTTG
* * * * * **
15157600 AATGCTGTAAATTGAAGTGCTTAAGTGTTGCAAATTGAAGTGTTTAAATACTGCAAATTGAAGTG
1 AATGCTGTAAATTGAAGTGTTTAAATGCTGTAAATTGAAGTGCTTAAATGTTGCAAATTGAAGTG
* * * *
15157665 TTTAGTTGCTGGACATTGAGATGT-TTTATCGCTGTAATTGAGGTGTATAAATGTTGTTAATTGA
66 TTTAGTTGCTGTA-ATTGAGATGTATTTAT-GCTGTAATTGAGATGT-TAAATGCTGCTAATTGA
* * * * **
15157729 TGTGTTAAAGTGCTGCAAATTGAAGTGTTTTAA-TGCTGTAAATTGAAGTGTTAAACTGCTAAAA
128 GGTGTTAAA-TGCTGTAAATTGAAGTG-TTAAAGTGCTGTAAATTGAAGTGTTAAAGTGCTGTAA
15157793 ATTGAAGTGTTTG
191 ATTGAAGTGTTTG
*
15157806 AATGCTGTAAATTGAAATGTTTAAATGCTGTAAATTGAAGTGCTTAAATGTTGCAAATTGAAGTG
1 AATGCTGTAAATTGAAGTGTTTAAATGCTGTAAATTGAAGTGCTTAAATGTTGCAAATTGAAGTG
* * * * *
15157871 TTTAGTTGCTGGACATTGAGATGT-TTTATCGCTGTAATTAAGGTGTATAAATGTTGTTAATTGA
66 TTTAGTTGCTGTA-ATTGAGATGTATTTAT-GCTGTAATTGAGATGT-TAAATGCTGCTAATTGA
* * *
15157935 GGTGTTAAAGTGCTGGAAATTGAAGTGTTTGAA-TGCTGTAAATTGAAGTGTTTAAA-TGCCGTA
128 GGTGTTAAA-TGCTGTAAATTGAAGTG-TTAAAGTGCTGTAAATTGAAGTG-TTAAAGTGCTGTA
* * *
15157998 AATTAAAGTGCTTA
190 AATTGAAGTGTTTG
* * * * ** *
15158012 AATGTTGCAAATTGAAGTGTTTAAGTACTACAAATTGAAGTG-TT-TA-GTTGCTAGACATTG-A
1 AATGCTGTAAATTGAAGTGTTTAAATGCTGTAAATTGAAGTGCTTAAATGTTGC-A-A-ATTGAA
* * * ** * *
15158073 GATGTTTTA-TCGCTATAATTGAGGTGTATAAATGTTGTTAATTGAGATGTTAAAGTGCTGCAAA
63 G-TG-TTTAGTTGCTGTAATTGAGATGTATTTATGCTG-TAATTGAGATGTTAAA-TGCTGCTAA
*
15158137 TTGAAGTGCTTAAATGCTGTAAATTGAAGTGTTAAAGTGCTGTAAATTGAAGTGTTAAAGTGCTG
124 TTGAGGTG-TTAAATGCTGTAAATTGAAGTGTTAAAGTGCTGTAAATTGAAGTGTTAAAGTGCTG
*
15158202 TAAATTGAAGTGTTGG
188 TAAATTGAAGTGTTTG
* * *
15158218 AATGTTGTAAATTGAAGTGTTTAAATGCCGTAAATTAAAGTGCTTAAATGTTGCAAATTGAAGTG
1 AATGCTGTAAATTGAAGTGTTTAAATGCTGTAAATTGAAGTGCTTAAATGTTGCAAATTGAAGTG
* ** * * ** *
15158283 TTTAAG-TACTACAAATTGA-A-GTGTTTAGTTGCTGGACATTGAGATGTTTTATCGCT-ATAAT
66 TTT-AGTTGCT-GTAATTGAGATGTATTTA--TGCTGTA-ATTGAGATGTTAAAT-GCTGCTAAT
* * *
15158344 TGAGGTG-TAAATGTTGTTAATTG-AGATGTTAAAGTGCTGTAAATTGAAGTGTTAAAGTGCTGC
125 TGAGGTGTTAAATGCTGTAAATTGAAG-TGTTAAAGTGCTGTAAATTGAAGTGTTAAAGTGCTGT
*
15158407 AAATTGAACTGTTTG
189 AAATTGAAGTGTTTG
*
15158422 AATGCTGTAAATTGAAGTGTTTAAATGGTGTAAATTGAAGTGCTTAAATGTTGCAAATTGAAGTG
1 AATGCTGTAAATTGAAGTGTTTAAATGCTGTAAATTGAAGTGCTTAAATGTTGCAAATTGAAGTG
* * * **
15158487 TTTAAG-TACTGTAAATTGA-A-GTGTTTAGTTGCTGGACATTGAGATGTTTTATCGCTG-TAAT
66 TTT-AGTTGCTGT-AATTGAGATGTATTTA--TGCTGTA-ATTGAGATGTTAAAT-GCTGCTAAT
* *
15158548 TGAGGTGTATAAATGTTGTTAATTG-AGATGTTAAAGTGCTGTAAATTGAAGTGTTAAAGTGCTG
125 TGAGGTGT-TAAATGCTGTAAATTGAAG-TGTTAAAGTGCTGTAAATTGAAGTGTTAAAGTGCTG
*
15158612 CAAATTGAAGTGTTTG
188 TAAATTGAAGTGTTTG
* * *
15158628 AATGCTGCAAATTCAAGTGTTTAAATGCTGTAAATTGAAGTGCTTAAATGTTGCAAATTAAAGTG
1 AATGCTGTAAATTGAAGTGTTTAAATGCTGTAAATTGAAGTGCTTAAATGTTGCAAATTGAAGTG
15158693 TTTA
66 TTTA
15158697 AGTACTTATT
Statistics
Matches: 948, Mismatches: 113, Indels: 73
0.84 0.10 0.06
Matches are distributed among these distances:
203 7 0.01
204 190 0.20
205 51 0.05
206 627 0.66
207 66 0.07
208 2 0.00
209 5 0.01
ACGTcount: A:0.32, C:0.07, G:0.24, T:0.38
Consensus pattern (203 bp):
AATGCTGTAAATTGAAGTGTTTAAATGCTGTAAATTGAAGTGCTTAAATGTTGCAAATTGAAGTG
TTTAGTTGCTGTAATTGAGATGTATTTATGCTGTAATTGAGATGTTAAATGCTGCTAATTGAGGT
GTTAAATGCTGTAAATTGAAGTGTTAAAGTGCTGTAAATTGAAGTGTTAAAGTGCTGTAAATTGA
AGTGTTTG
Found at i:15157800 original size:229 final size:229
Alignment explanation
Indices: 15157392--15157874 Score: 876
Period size: 229 Copynumber: 2.1 Consensus size: 229
15157382 ATATTAGTAG
* *
15157392 TAAATGCTGCAAATTGAAGTGTTTAAGTACTGCAAATTGAAGTGTTTAATTGCTGGAAATTGAGA
1 TAAATGTTGCAAATTGAAGTGTTTAAATACTGCAAATTGAAGTGTTTAATTGCTGGAAATTGAGA
15157457 TGTTTTATCGCTGTAATTGAGGTGTATAAATGTTGTTAATTGAAATGTTAAAGTGCTGCAAATTG
66 TGTTTTATCGCTGTAATTGAGGTGTATAAATGTTGTTAATTGAAATGTTAAAGTGCTGCAAATTG
*
15157522 AAGTGGTTTAATGCTGTAAATTGAAGTGTTAAACTGCTACAAATTGAAGTGTTTGAATGCTGTAA
131 AAGTGGTTTAATGCTGTAAATTGAAGTGTTAAACTGCTAAAAATTGAAGTGTTTGAATGCTGTAA
*
15157587 ATTGAAGTGTTTAAATGCTGTAAATTGAAGTGCT
196 ATTGAAATGTTTAAATGCTGTAAATTGAAGTGCT
* * *
15157621 TAAGTGTTGCAAATTGAAGTGTTTAAATACTGCAAATTGAAGTGTTTAGTTGCTGGACATTGAGA
1 TAAATGTTGCAAATTGAAGTGTTTAAATACTGCAAATTGAAGTGTTTAATTGCTGGAAATTGAGA
**
15157686 TGTTTTATCGCTGTAATTGAGGTGTATAAATGTTGTTAATTGATGTGTTAAAGTGCTGCAAATTG
66 TGTTTTATCGCTGTAATTGAGGTGTATAAATGTTGTTAATTGAAATGTTAAAGTGCTGCAAATTG
*
15157751 AAGTGTTTTAATGCTGTAAATTGAAGTGTTAAACTGCTAAAAATTGAAGTGTTTGAATGCTGTAA
131 AAGTGGTTTAATGCTGTAAATTGAAGTGTTAAACTGCTAAAAATTGAAGTGTTTGAATGCTGTAA
15157816 ATTGAAATGTTTAAATGCTGTAAATTGAAGTGCT
196 ATTGAAATGTTTAAATGCTGTAAATTGAAGTGCT
15157850 TAAATGTTGCAAATTGAAGTGTTTA
1 TAAATGTTGCAAATTGAAGTGTTTA
15157875 GTTGCTGGAC
Statistics
Matches: 243, Mismatches: 11, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
229 243 1.00
ACGTcount: A:0.33, C:0.07, G:0.23, T:0.38
Consensus pattern (229 bp):
TAAATGTTGCAAATTGAAGTGTTTAAATACTGCAAATTGAAGTGTTTAATTGCTGGAAATTGAGA
TGTTTTATCGCTGTAATTGAGGTGTATAAATGTTGTTAATTGAAATGTTAAAGTGCTGCAAATTG
AAGTGGTTTAATGCTGTAAATTGAAGTGTTAAACTGCTAAAAATTGAAGTGTTTGAATGCTGTAA
ATTGAAATGTTTAAATGCTGTAAATTGAAGTGCT
Found at i:15157957 original size:183 final size:181
Alignment explanation
Indices: 15157762--15158240 Score: 669
Period size: 183 Copynumber: 2.6 Consensus size: 181
15157752 AGTGTTTTAA
* ** *
15157762 TGCTGTAAATTGAAGTG-TTAAACTGCTAAAAATTGAAGTGTTTGAATGCTGTAAATTGAAATGT
1 TGCTGCAAATTGAAGTGCTTAAA-TGCTGTAAATTGAAGTGTTTAAATGCTGTAAATTGAAATG-
*
15157826 TTAAATGCTGTAAATTGAAGTGCTTAAATGTTGCAAATTGAAGTGTTTAGTTGCTGGACATTGAG
64 TTAAATGCTGTAAATTGAAGTG-TTAAATGTTGCAAATTGAAGTGTTTAGTTGCTAGACATTGAG
* *
15157891 ATGTTTTATCGCTGTAATTAAGGTGTATAAATGTTGTTAATTGAGGTGTTAAAG
128 ATGTTTTATCGCTATAATTAAGGTGTATAAATGTTGTTAATTGAGATGTTAAAG
* * * *
15157945 TGCTGGAAATTGAAGTGTTTGAATGCTGTAAATTGAAGTGTTTAAATGCCGTAAATT-AAAGTGC
1 TGCTGCAAATTGAAGTGCTTAAATGCTGTAAATTGAAGTGTTTAAATGCTGTAAATTGAAA-TG-
* * * *
15158009 TTAAATGTTGCAAATTGAAGTGTTTAA-GTACTACAAATTGAAGTGTTTAGTTGCTAGACATTGA
64 TTAAATGCTGTAAATTGAAGTGTTAAATGT--TGCAAATTGAAGTGTTTAGTTGCTAGACATTGA
*
15158073 GATGTTTTATCGCTATAATTGAGGTGTATAAATGTTGTTAATTGAGATGTTAAAG
127 GATGTTTTATCGCTATAATTAAGGTGTATAAATGTTGTTAATTGAGATGTTAAAG
*
15158128 TGCTGCAAATTGAAGTGCTTAAATGCTGTAAATTGAAGTG-TTAAAGTGCTGTAAATTGAAGTGT
1 TGCTGCAAATTGAAGTGCTTAAATGCTGTAAATTGAAGTGTTTAAA-TGCTGTAAATTGAAATGT
* *
15158192 TAAAGTGCTGTAAATTGAAGTGTTGGAATGTTGTAAATTGAAGTGTTTA
65 TAAA-TGCTGTAAATTGAAGTGTT-AAATGTTGCAAATTGAAGTGTTTA
15158241 AATGCCGTAA
Statistics
Matches: 262, Mismatches: 25, Indels: 18
0.86 0.08 0.06
Matches are distributed among these distances:
181 2 0.01
182 17 0.06
183 233 0.89
184 8 0.03
185 2 0.01
ACGTcount: A:0.33, C:0.06, G:0.24, T:0.38
Consensus pattern (181 bp):
TGCTGCAAATTGAAGTGCTTAAATGCTGTAAATTGAAGTGTTTAAATGCTGTAAATTGAAATGTT
AAATGCTGTAAATTGAAGTGTTAAATGTTGCAAATTGAAGTGTTTAGTTGCTAGACATTGAGATG
TTTTATCGCTATAATTAAGGTGTATAAATGTTGTTAATTGAGATGTTAAAG
Found at i:15159548 original size:43 final size:43
Alignment explanation
Indices: 15159512--15159618 Score: 178
Period size: 43 Copynumber: 2.5 Consensus size: 43
15159502 GCTAAAGGTT
*
15159512 ATGACTTTTAGCGGCGCTTTTCTCACAAACGCCGCTAAAAGCC
1 ATGACTTTTAGCGGCGCTTTTCCCACAAACGCCGCTAAAAGCC
* *
15159555 ATGACTTTTAGCGGCGCTTTTCCCACAAATGCCACTAAAAGCC
1 ATGACTTTTAGCGGCGCTTTTCCCACAAACGCCGCTAAAAGCC
*
15159598 ATGACTTTTAGCGGCGTTTTT
1 ATGACTTTTAGCGGCGCTTTT
15159619 TTGAATAAAT
Statistics
Matches: 60, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
43 60 1.00
ACGTcount: A:0.24, C:0.27, G:0.19, T:0.30
Consensus pattern (43 bp):
ATGACTTTTAGCGGCGCTTTTCCCACAAACGCCGCTAAAAGCC
Found at i:15161112 original size:30 final size:30
Alignment explanation
Indices: 15161078--15161138 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
15161068 TTCCCGAGCC
*
15161078 TAGGGGTAAAAGTGTAAATATGCAAAAGTT
1 TAGGGGCAAAAGTGTAAATATGCAAAAGTT
* * * *
15161108 TAGGGGCAAAATTGTAATTTTGCCAAAGTT
1 TAGGGGCAAAAGTGTAAATATGCAAAAGTT
15161138 T
1 T
15161139 GAGTTAAGGA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.38, C:0.07, G:0.25, T:0.31
Consensus pattern (30 bp):
TAGGGGCAAAAGTGTAAATATGCAAAAGTT
Found at i:15161920 original size:68 final size:66
Alignment explanation
Indices: 15161848--15162019 Score: 170
Period size: 67 Copynumber: 2.6 Consensus size: 66
15161838 CATCACGTGT
* * * *
15161848 ACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGTGATACTA-TG-TGTACACCA
1 ACAAGAGAGCTAC--GACA-TAT-ATGTAGCTAGGTCGCATGCGTGATACCAGTGAAGGACACCA
15161911 TGTAG
62 TGTAG
** * *
15161916 ACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGGTTCCAGGTGAAGGACACCATGT
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGATACCA-GTGAAGGACACCATGT
15161981 AG
65 AG
** * *
15161983 ACAAGAGAGCTACGGGATAAAT-TAGCTAGGTCACATG
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATG
15162020 GGTGGTACTG
Statistics
Matches: 91, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
64 24 0.26
65 3 0.03
66 18 0.20
67 33 0.36
68 13 0.14
ACGTcount: A:0.32, C:0.17, G:0.29, T:0.22
Consensus pattern (66 bp):
ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGATACCAGTGAAGGACACCATGTA
G
Found at i:15161951 original size:64 final size:64
Alignment explanation
Indices: 15161872--15162055 Score: 221
Period size: 67 Copynumber: 2.8 Consensus size: 64
15161862 AGACATTATG
* *
15161872 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAA
* * * * *
15161936 ATGTAGCTAGGTCGCATGCGTGGTTCCAGGTGAAGGACACCATGTAGACAAGAGAGCTACGGGAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTA--TG-TGTACACCATGTAGACAAGAGAGCTACGGGAT
15162001 AA
63 AA
* *
15162003 AT-TAGCTAGGTCACATGGGTGGTACTGA-GTGTTCACCATGT-GTACAAGAGAGC
1 ATGTAGCTAGGTCGCATGGGTGGTACT-ATGTGTACACCATGTAG-ACAAGAGAGC
15162056 CGAACTATAT
Statistics
Matches: 101, Mismatches: 14, Indels: 11
0.80 0.11 0.09
Matches are distributed among these distances:
62 1 0.01
63 19 0.19
64 25 0.25
66 22 0.22
67 34 0.34
ACGTcount: A:0.29, C:0.17, G:0.31, T:0.23
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAA
Found at i:15168275 original size:8 final size:8
Alignment explanation
Indices: 15168233--15168257 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
15168223 ATATAGACTA
15168233 AATAAAAT
1 AATAAAAT
15168241 AATAAAAT
1 AATAAAAT
15168249 AATAAAAT
1 AATAAAAT
15168257 A
1 A
15168258 TCTTATTAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (8 bp):
AATAAAAT
Found at i:15168281 original size:29 final size:31
Alignment explanation
Indices: 15168230--15168298 Score: 81
Period size: 29 Copynumber: 2.3 Consensus size: 31
15168220 TATATATAGA
*
15168230 CTAAATAAAATAATAAAATAATAA-AA-TAT
1 CTAATTAAAATAATAAAATAATAAGAATTAT
* *
15168259 CTTATTAAAAT-ATTAAATAAATAAGAATTAT
1 CTAATTAAAATAATAAAAT-AATAAGAATTAT
15168290 CTAATTAAA
1 CTAATTAAA
15168299 TAACTATAAA
Statistics
Matches: 33, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
28 6 0.18
29 14 0.42
30 2 0.06
31 11 0.33
ACGTcount: A:0.61, C:0.04, G:0.01, T:0.33
Consensus pattern (31 bp):
CTAATTAAAATAATAAAATAATAAGAATTAT
Found at i:15168579 original size:30 final size:31
Alignment explanation
Indices: 15168511--15168569 Score: 84
Period size: 30 Copynumber: 1.9 Consensus size: 31
15168501 CACCCTTAAA
* * *
15168511 ATATTTTCACTATTAGTCCTTCAAATTTTTC
1 ATATTTACACTATTAATCCCTCAAATTTTTC
15168542 ATATTTACACT-TTAATCCCTCAAATTTT
1 ATATTTACACTATTAATCCCTCAAATTTT
15168570 GAGTATTTAC
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
30 15 0.60
31 10 0.40
ACGTcount: A:0.29, C:0.20, G:0.02, T:0.49
Consensus pattern (31 bp):
ATATTTACACTATTAATCCCTCAAATTTTTC
Found at i:15169295 original size:20 final size:20
Alignment explanation
Indices: 15169247--15169285 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
15169237 TGGAGCAGGA
15169247 ATATCGATACCTTAAGAAAT
1 ATATCGATACCTTAAGAAAT
*
15169267 ATATCGATATCTTAAGAAA
1 ATATCGATACCTTAAGAAA
15169286 ACTATTGATA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.46, C:0.13, G:0.10, T:0.31
Consensus pattern (20 bp):
ATATCGATACCTTAAGAAAT
Found at i:15169641 original size:34 final size:34
Alignment explanation
Indices: 15169598--15169662 Score: 130
Period size: 34 Copynumber: 1.9 Consensus size: 34
15169588 ATGGGACAGG
15169598 TACACACTTCCTAAGATGATAGACTGGCTTAGTT
1 TACACACTTCCTAAGATGATAGACTGGCTTAGTT
15169632 TACACACTTCCTAAGATGATAGACTGGCTTA
1 TACACACTTCCTAAGATGATAGACTGGCTTA
15169663 ATTTTCTTTT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 31 1.00
ACGTcount: A:0.31, C:0.22, G:0.17, T:0.31
Consensus pattern (34 bp):
TACACACTTCCTAAGATGATAGACTGGCTTAGTT
Found at i:15172564 original size:40 final size:40
Alignment explanation
Indices: 15172520--15172634 Score: 167
Period size: 40 Copynumber: 2.9 Consensus size: 40
15172510 TACTAAGCAT
*
15172520 TAAGCCCGATAAGTACACCAACACGAAGCATGCTAGGCAC
1 TAAGCCCGATAAGTACACCAACACGAAGCCTGCTAGGCAC
** * *
15172560 TAAGCTTGATAAGTAAACCAACACGAAGCCTGCTAGGCAT
1 TAAGCCCGATAAGTACACCAACACGAAGCCTGCTAGGCAC
**
15172600 TAAGCCCGATAAGTACACCGGCACGAAGCCTGCTA
1 TAAGCCCGATAAGTACACCAACACGAAGCCTGCTA
15172635 AGCAACAAGG
Statistics
Matches: 65, Mismatches: 10, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
40 65 1.00
ACGTcount: A:0.36, C:0.28, G:0.21, T:0.16
Consensus pattern (40 bp):
TAAGCCCGATAAGTACACCAACACGAAGCCTGCTAGGCAC
Found at i:15191451 original size:19 final size:19
Alignment explanation
Indices: 15191427--15191464 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
15191417 TTGGAAATTC
15191427 TTCAAAATTCTAACTTCAA
1 TTCAAAATTCTAACTTCAA
*
15191446 TTCAAAATTCTAATTTCAA
1 TTCAAAATTCTAACTTCAA
15191465 AGTAAAGAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.42, C:0.18, G:0.00, T:0.39
Consensus pattern (19 bp):
TTCAAAATTCTAACTTCAA
Found at i:15195972 original size:20 final size:20
Alignment explanation
Indices: 15195942--15195990 Score: 64
Period size: 20 Copynumber: 2.4 Consensus size: 20
15195932 TTTTTATACT
15195942 TTTTTATTATATGT-TTTCTTA
1 TTTTTA-TATATGTATTTC-TA
*
15195963 TTTTTATATATTTATTTCTA
1 TTTTTATATATGTATTTCTA
15195983 TTTTTATA
1 TTTTTATA
15195991 AATTTTAAAA
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
20 16 0.62
21 10 0.38
ACGTcount: A:0.22, C:0.04, G:0.02, T:0.71
Consensus pattern (20 bp):
TTTTTATATATGTATTTCTA
Found at i:15195997 original size:21 final size:21
Alignment explanation
Indices: 15195956--15195995 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 21
15195946 TATTATATGT
*
15195956 TTTCTTATTTTTATATATTTA
1 TTTCTTATTTTTATAAATTTA
15195977 TTTC-TATTTTTATAAATTT
1 TTTCTTATTTTTATAAATTT
15195996 TAAAATTGAT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 14 0.78
21 4 0.22
ACGTcount: A:0.25, C:0.05, G:0.00, T:0.70
Consensus pattern (21 bp):
TTTCTTATTTTTATAAATTTA
Found at i:15196879 original size:24 final size:24
Alignment explanation
Indices: 15196850--15196901 Score: 77
Period size: 24 Copynumber: 2.2 Consensus size: 24
15196840 TTTCTAGAAG
* *
15196850 ATTTAGTATTTATTAGTATAATAT
1 ATTTAGTATTTACTAGCATAATAT
*
15196874 ATTTAGTATTTACTAGCATAATTT
1 ATTTAGTATTTACTAGCATAATAT
15196898 ATTT
1 ATTT
15196902 GACTTACGAA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.35, C:0.04, G:0.08, T:0.54
Consensus pattern (24 bp):
ATTTAGTATTTACTAGCATAATAT
Found at i:15202760 original size:42 final size:42
Alignment explanation
Indices: 15202714--15202809 Score: 156
Period size: 42 Copynumber: 2.3 Consensus size: 42
15202704 GCAGAGACGT
* *
15202714 GGGCGTGTGTCTCAGCCGTGTGTACCACACGGCCTAGAACAC
1 GGGCGTGTGTCTCAACCGTGTGTACCACACAGCCTAGAACAC
* *
15202756 GGGCGTGTGTCTCAACTGTGTGTACTACACAGCCTAGAACAC
1 GGGCGTGTGTCTCAACCGTGTGTACCACACAGCCTAGAACAC
15202798 GGGCGTGTGTCT
1 GGGCGTGTGTCT
15202810 TGGCCATGTG
Statistics
Matches: 50, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
42 50 1.00
ACGTcount: A:0.19, C:0.27, G:0.31, T:0.23
Consensus pattern (42 bp):
GGGCGTGTGTCTCAACCGTGTGTACCACACAGCCTAGAACAC
Found at i:15210705 original size:22 final size:22
Alignment explanation
Indices: 15210677--15210762 Score: 100
Period size: 22 Copynumber: 3.9 Consensus size: 22
15210667 CTAATAGAAT
*
15210677 AGAGAGCACCGATGTGCTAAAC
1 AGAGAGCACCAATGTGCTAAAC
* * * *
15210699 AGAGAGCACTAATGAGCTGATC
1 AGAGAGCACCAATGTGCTAAAC
*
15210721 AGAGAGCACCCATGTGCTAAAC
1 AGAGAGCACCAATGTGCTAAAC
* *
15210743 AAAGAGCACTAATGTGCTAA
1 AGAGAGCACCAATGTGCTAA
15210763 TAAATTAGAG
Statistics
Matches: 51, Mismatches: 13, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
22 51 1.00
ACGTcount: A:0.38, C:0.21, G:0.24, T:0.16
Consensus pattern (22 bp):
AGAGAGCACCAATGTGCTAAAC
Found at i:15214363 original size:52 final size:52
Alignment explanation
Indices: 15214285--15214386 Score: 152
Period size: 52 Copynumber: 2.0 Consensus size: 52
15214275 GACGGAAAAG
* *
15214285 ATGTGATATGTGCACCGATTTAAGACCATAGCTAGG-CTATGGCATCGGTGCA
1 ATGTGATATGTGCACCCATATAAGACCATAGCT-GGACTATGGCATCGGTGCA
**
15214337 ATGTGATATGTGTTCCCATATAAGACCATAGCTGGACTATGGCATCGGTG
1 ATGTGATATGTGCACCCATATAAGACCATAGCTGGACTATGGCATCGGTG
15214387 TGACATGATA
Statistics
Matches: 45, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
51 2 0.04
52 43 0.96
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (52 bp):
ATGTGATATGTGCACCCATATAAGACCATAGCTGGACTATGGCATCGGTGCA
Found at i:15214396 original size:52 final size:54
Alignment explanation
Indices: 15214305--15214441 Score: 149
Period size: 53 Copynumber: 2.6 Consensus size: 54
15214295 TGCACCGATT
** **
15214305 TAAGACCATAGCTAGG-CTATGGCATCGGTGCAATGTGAT-ATGTG-TTCCCATA
1 TAAGACCATAGCTAGGACTATGGCATCGGTGTGACATGATAATGTGATT-CCATA
*
15214357 TAAGACCATAGCT-GGACTATGGCATCGGTGTGACATGATAATGTGATTCCGTA
1 TAAGACCATAGCTAGGACTATGGCATCGGTGTGACATGATAATGTGATTCCATA
* * * *
15214410 TAAGACTATATCTGGGA-TATAGCATCGGTGTG
1 TAAGACCATAGCTAGGACTATGGCATCGGTGTG
15214442 TGATGTGATC
Statistics
Matches: 73, Mismatches: 8, Indels: 7
0.83 0.09 0.08
Matches are distributed among these distances:
51 2 0.03
52 32 0.44
53 34 0.47
54 5 0.07
ACGTcount: A:0.28, C:0.17, G:0.26, T:0.29
Consensus pattern (54 bp):
TAAGACCATAGCTAGGACTATGGCATCGGTGTGACATGATAATGTGATTCCATA
Found at i:15221863 original size:53 final size:51
Alignment explanation
Indices: 15221716--15221915 Score: 176
Period size: 52 Copynumber: 3.9 Consensus size: 51
15221706 GGAAAAGATG
* * * * ** *
15221716 TGATATGTGCGTCCGTTTAAGACCATAGCTAGGCTATGGCATCGGTGCAATA
1 TGATATGTG-TTCCGTATAAGACCATATCTGGGCTATGGCATCGGTGTGACA
* *
15221768 TGATATGTGTTCCCGTATAAGATCATATCTGGGCTATAGCATCGGTGTGACA
1 TGATATGTGTT-CCGTATAAGACCATATCTGGGCTATGGCATCGGTGTGACA
* * *
15221820 TGATAATGTGATTCCGTATAAGACCATATTTGGGATATGGCATCAGTGTG---
1 TGAT-ATGTG-TTCCGTATAAGACCATATCTGGGCTATGGCATCGGTGTGACA
* * * * *
15221870 TG--ATGTGATCCGTGTAAGACCATAGCAGGGCTATGGCTTCGGTGTG
1 TGATATGTGTTCCGTATAAGACCATATCTGGGCTATGGCATCGGTGTG
15221916 TGATATGTGA
Statistics
Matches: 123, Mismatches: 22, Indels: 12
0.78 0.14 0.08
Matches are distributed among these distances:
46 31 0.25
47 5 0.04
50 2 0.02
51 1 0.01
52 45 0.37
53 37 0.30
54 2 0.02
ACGTcount: A:0.24, C:0.17, G:0.28, T:0.31
Consensus pattern (51 bp):
TGATATGTGTTCCGTATAAGACCATATCTGGGCTATGGCATCGGTGTGACA
Found at i:15221905 original size:46 final size:47
Alignment explanation
Indices: 15221825--15221919 Score: 120
Period size: 46 Copynumber: 2.0 Consensus size: 47
15221815 TGACATGATA
***
15221825 ATGTGATTCCGTATAAGACCATATTTGGGATATGGCATCAGTGTGTG
1 ATGTGATTCCGTATAAGACCATAGCAGGGATATGGCATCAGTGTGTG
* * * *
15221872 ATGTGA-TCCGTGTAAGACCATAGCAGGGCTATGGCTTCGGTGTGTG
1 ATGTGATTCCGTATAAGACCATAGCAGGGATATGGCATCAGTGTGTG
15221918 AT
1 AT
15221920 ATGTGACAAT
Statistics
Matches: 41, Mismatches: 7, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
46 35 0.85
47 6 0.15
ACGTcount: A:0.23, C:0.15, G:0.31, T:0.32
Consensus pattern (47 bp):
ATGTGATTCCGTATAAGACCATAGCAGGGATATGGCATCAGTGTGTG
Found at i:15223134 original size:29 final size:28
Alignment explanation
Indices: 15223092--15223409 Score: 167
Period size: 29 Copynumber: 10.9 Consensus size: 28
15223082 TTAATCGATG
*
15223092 GTCGAAACCATCCCTTTTCATATTTGATA
1 GTCG-AACTATCCCTTTTCATATTTGATA
* *
15223121 GTCGAAGCTATCCCTTTTCATATTCGATT
1 GTCGAA-CTATCCCTTTTCATATTTGATA
* * * *
15223150 GCCGAAGCTATCCCTTTTCCTATTGGATG
1 GTCGAA-CTATCCCTTTTCATATTTGATA
* * *
15223179 GTCGTCACCATCCCTTTTCATAGTTGAT-
1 GTCG-AACTATCCCTTTTCATATTTGATA
* * * * * **
15223207 GTTTGTCACCATCTCTTTTCATAATCAATA
1 G-TCG-AACTATCCCTTTTCATATTTGATA
* * *
15223237 GCCGAAGCTATCCCTTTTTATATTTGATG
1 GTCGAA-CTATCCCTTTTCATATTTGATA
* * * * *
15223266 GTTGTCACCATCCCTTTTCATAGTTGATG
1 GTCG-AACTATCCCTTTTCATATTTGATA
* * * *
15223295 GTCGTAACCATCCGTTGTCATAATTGATA
1 GTCG-AACTATCCCTTTTCATATTTGATA
* *
15223324 G-CTGAAACTATCCGTTTTCATATTCGATA
1 GTC-G-AACTATCCCTTTTCATATTTGATA
*
15223353 G-CTGAAACTATCCCTTTTCATATTCGATA
1 GTC-G-AACTATCCCTTTTCATATTTGATA
*
15223382 G-CTGAAGCTATTCCTTTTCATTATTTGA
1 GTC-GAA-CTATCCCTTTTCA-TATTTGA
15223410 GGGTTGTCGA
Statistics
Matches: 232, Mismatches: 48, Indels: 17
0.78 0.16 0.06
Matches are distributed among these distances:
28 7 0.03
29 216 0.93
30 9 0.04
ACGTcount: A:0.23, C:0.23, G:0.14, T:0.40
Consensus pattern (28 bp):
GTCGAACTATCCCTTTTCATATTTGATA
Found at i:15223163 original size:58 final size:55
Alignment explanation
Indices: 15223101--15223409 Score: 190
Period size: 58 Copynumber: 5.3 Consensus size: 55
15223091 GGTCGAAACC
* *
15223101 ATCCCTTTTCATATTTGATAGTCGAAGCTATCCCTTTTCATATTCGATTGCCGAAGCT
1 ATCCCTTTTCATATTTGATAGTCGAA-CTATCCCTTTTCATATT-GATAGCTGAA-CT
* * * * * * * *
15223159 ATCCCTTTTCCTATTGGATGGTCGTCACCATCCCTTTTCATAGTTGAT-GTTTGTCACC
1 ATCCCTTTTCATATTTGATAGTCG-AACTATCCCTTTTCATA-TTGATAG-CTG-AACT
* * ** * * * * * *
15223217 ATCTCTTTTCATAATCAATAGCCGAAGCTATCCCTTTTTATATTTGATGGTTGTCACC
1 ATCCCTTTTCATATTTGATAGTCGAA-CTATCCCTTTTCATA-TTGATAGCTG-AACT
* * * * *
15223275 ATCCCTTTTCATAGTTGATGGTCGTAACCATCCGTTGTCATAATTGATAGCTGAAACT
1 ATCCCTTTTCATATTTGATAGTCG-AACTATCCCTTTTCAT-ATTGATAGCTG-AACT
* *
15223333 ATCCGTTTTCATATTCGATAG-CTGAAACTATCCCTTTTCATATTCGATAGCTGAAGCT
1 ATCCCTTTTCATATTTGATAGTC-G-AACTATCCCTTTTCATATT-GATAGCTGAA-CT
*
15223391 ATTCCTTTTCATTATTTGA
1 ATCCCTTTTCA-TATTTGA
15223410 GGGTTGTCGA
Statistics
Matches: 193, Mismatches: 46, Indels: 23
0.74 0.18 0.09
Matches are distributed among these distances:
57 8 0.04
58 171 0.89
59 14 0.07
ACGTcount: A:0.23, C:0.23, G:0.14, T:0.40
Consensus pattern (55 bp):
ATCCCTTTTCATATTTGATAGTCGAACTATCCCTTTTCATATTGATAGCTGAACT
Found at i:15223241 original size:87 final size:86
Alignment explanation
Indices: 15223088--15223347 Score: 297
Period size: 87 Copynumber: 3.0 Consensus size: 86
15223078 TTCTTTAATC
** * * * * *
15223088 GATGGTCGAAACCATCCCTTTTCATATTTGATAGTCG-AAGCTATCCCTTTTCATATTCGATTGC
1 GATGGTCGTCACCATCCCTTTTCATAGTTGATGGTCGTAA-CCAT-CCTTTTCATAATCGATAGC
*
15223152 CGAAGCTATCCCTTTTCCTATTG
64 CGAAGCTATCCCTTTTCATATTG
* * * *
15223175 GATGGTCGTCACCATCCCTTTTCATAGTTGATGTTTGTCACCATCTCTTTTCATAATCAATAGCC
1 GATGGTCGTCACCATCCCTTTTCATAGTTGATGGTCGTAACCATC-CTTTTCATAATCGATAGCC
* *
15223240 GAAGCTATCCCTTTTTATATTT
65 GAAGCTATCCCTTTTCATATTG
* * * *
15223262 GATGGTTGTCACCATCCCTTTTCATAGTTGATGGTCGTAACCATCCGTTGTCATAATTGATAGCT
1 GATGGTCGTCACCATCCCTTTTCATAGTTGATGGTCGTAACCATCC-TTTTCATAATCGATAGCC
* *
15223327 GAAACTATCCGTTTTCATATT
65 GAAGCTATCCCTTTTCATATT
15223348 CGATAGCTGA
Statistics
Matches: 145, Mismatches: 25, Indels: 6
0.82 0.14 0.03
Matches are distributed among these distances:
86 2 0.01
87 142 0.98
88 1 0.01
ACGTcount: A:0.22, C:0.23, G:0.15, T:0.39
Consensus pattern (86 bp):
GATGGTCGTCACCATCCCTTTTCATAGTTGATGGTCGTAACCATCCTTTTCATAATCGATAGCCG
AAGCTATCCCTTTTCATATTG
Found at i:15232939 original size:9 final size:9
Alignment explanation
Indices: 15232925--15232959 Score: 61
Period size: 9 Copynumber: 3.9 Consensus size: 9
15232915 CCCATTTACG
*
15232925 AGTAATTTC
1 AGTAATTTT
15232934 AGTAATTTT
1 AGTAATTTT
15232943 AGTAATTTT
1 AGTAATTTT
15232952 AGTAATTT
1 AGTAATTT
15232960 ACGAGTATCA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
9 25 1.00
ACGTcount: A:0.34, C:0.03, G:0.11, T:0.51
Consensus pattern (9 bp):
AGTAATTTT
Found at i:15246349 original size:28 final size:28
Alignment explanation
Indices: 15246284--15246352 Score: 93
Period size: 28 Copynumber: 2.5 Consensus size: 28
15246274 GGTCAGATTC
*
15246284 CAACGGCCATATTGTAACAGTCATATTT
1 CAACGGCCATATTGTAACAATCATATTT
**
15246312 CAGTGGCCATATTGTAACAATCATATTT
1 CAACGGCCATATTGTAACAATCATATTT
* *
15246340 TAACGACCATATT
1 CAACGGCCATATT
15246353 TTTACATTAC
Statistics
Matches: 34, Mismatches: 7, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
28 34 1.00
ACGTcount: A:0.33, C:0.20, G:0.13, T:0.33
Consensus pattern (28 bp):
CAACGGCCATATTGTAACAATCATATTT
Found at i:15249241 original size:24 final size:24
Alignment explanation
Indices: 15249206--15249251 Score: 60
Period size: 24 Copynumber: 1.9 Consensus size: 24
15249196 CCAAGTAAAG
15249206 ATTATAATAATACTT-AATATTAAT
1 ATTATAATAATA-TTAAATATTAAT
15249230 ATTAT-ATAAATATTAAATATTA
1 ATTATAAT-AATATTAAATATTA
15249252 CTAGGCCGTT
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
23 4 0.20
24 16 0.80
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.46
Consensus pattern (24 bp):
ATTATAATAATATTAAATATTAAT
Found at i:15255250 original size:396 final size:395
Alignment explanation
Indices: 15254519--15255312 Score: 1462
Period size: 396 Copynumber: 2.0 Consensus size: 395
15254509 AAATATGTTA
*
15254519 TTCAAATGGTTCATTGGATGTTTGCACTCTGAATTCTTGGATTCTGGTGTTTCTAAGATCTGTTA
1 TTCAAATGGTTCATTGGATGTTGGCACTCTGAATTCTTGGATTCTGGTGTTTCTAAGATCTGTTA
*
15254584 CCTGGTATATCTTCACAATCTTATTTACCACAACTCTTTCTCTGAGAAAACATGGAAACCAGTTT
66 CCTGGTATATCTTCACAATCTTATTTACCACAACTCTTTCTCCGAGAAAACATGGAAACCAGTTT
*
15254649 TTAATGATCTGCATGAGTTTCAAATACTGAAGTGATGAAAAAAGGGCAATTACATGAAATTTTTA
131 TTAATGATCTGCATGAGTTTCAAATACTGAAGTGACGAAAAAAGGGCAATTACATGAAATTTTTA
* *
15254714 ATCAGGATAATGGTTAACTAATCTCAAAGGCATTTCGACATCTTATTTTCAGCTTCATATTTACT
196 ATCAGGATAATGGTTAACTAATCTCAAAGGCATTTCGACATCTCATTTTCAGCTTCATATTTACC
15254779 AATATAGTAGTTTTATGTTGACTGTTGTCTTTAAGCTATCCTTCATTGTTGCTGCACTTGTTTAC
261 AATATAGTAGTTTTATGTTGACTGTTGTCTTTAAGCTATCCTTCATTGTTGCTGCACTTGTTTAC
* *
15254844 AATTGCGCTATTTACGAGGATACTGTAATTAGTTTCACCATTATGGTGTCATAGCTTAGTTTAAT
326 AATTGCGCTATTTACGAGGATACTGCAATTAGTTCCACCATTATGGTGTCATAGCTTAGTTTAAT
15254909 TTATT
391 TTATT
15254914 TTCAAATGGTTCATTGGATGTTGGCACTCTGAATTCTTGGATTCTGGTGTTTCTAAGATCTGTTA
1 TTCAAATGGTTCATTGGATGTTGGCACTCTGAATTCTTGGATTCTGGTGTTTCTAAGATCTGTTA
*
15254979 CCTGGTAATATCTTCACAATCTTATTTACCACGACTCTTTCTCCGAGAAAACATGGAAACCAGTT
66 CCTGGT-ATATCTTCACAATCTTATTTACCACAACTCTTTCTCCGAGAAAACATGGAAACCAGTT
15255044 TTTAATGATCTGCATGAGTTTCAAATACTGAAGTGACGAAAAAAGGGCAATTACATGAAATTTTT
130 TTTAATGATCTGCATGAGTTTCAAATACTGAAGTGACGAAAAAAGGGCAATTACATGAAATTTTT
* * *
15255109 AATCAGGATAGTGGTTAACTAATCTGAAAGGCATTTCGACGTCTCATTTTCAGCTTCATATTTAC
195 AATCAGGATAATGGTTAACTAATCTCAAAGGCATTTCGACATCTCATTTTCAGCTTCATATTTAC
*
15255174 CAATATAGTAGTTTTATGTTGATTGTTGTCTTTAAGCTATCCTTCATTGTTGCTGCACTTGTTTA
260 CAATATAGTAGTTTTATGTTGACTGTTGTCTTTAAGCTATCCTTCATTGTTGCTGCACTTGTTTA
*
15255239 CAATTGCGCTATTTATGAGGATACTGCAATTAGTTCCACCATTATGGTGTCATAGCTTAGTTTAA
325 CAATTGCGCTATTTACGAGGATACTGCAATTAGTTCCACCATTATGGTGTCATAGCTTAGTTTAA
15255304 TTTATT
390 TTTATT
15255310 TTC
1 TTC
15255313 CATTAATTTA
Statistics
Matches: 385, Mismatches: 13, Indels: 1
0.96 0.03 0.00
Matches are distributed among these distances:
395 70 0.18
396 315 0.82
ACGTcount: A:0.28, C:0.16, G:0.17, T:0.39
Consensus pattern (395 bp):
TTCAAATGGTTCATTGGATGTTGGCACTCTGAATTCTTGGATTCTGGTGTTTCTAAGATCTGTTA
CCTGGTATATCTTCACAATCTTATTTACCACAACTCTTTCTCCGAGAAAACATGGAAACCAGTTT
TTAATGATCTGCATGAGTTTCAAATACTGAAGTGACGAAAAAAGGGCAATTACATGAAATTTTTA
ATCAGGATAATGGTTAACTAATCTCAAAGGCATTTCGACATCTCATTTTCAGCTTCATATTTACC
AATATAGTAGTTTTATGTTGACTGTTGTCTTTAAGCTATCCTTCATTGTTGCTGCACTTGTTTAC
AATTGCGCTATTTACGAGGATACTGCAATTAGTTCCACCATTATGGTGTCATAGCTTAGTTTAAT
TTATT
Found at i:15259744 original size:19 final size:19
Alignment explanation
Indices: 15259703--15259743 Score: 50
Period size: 18 Copynumber: 2.2 Consensus size: 19
15259693 TCATCATTTG
*
15259703 AAAATAAAAAATAATATTA
1 AAAATAAAAAATAATATAA
15259722 AAAATATAAAAAT--TATAA
1 AAAATA-AAAAATAATATAA
15259740 AAAA
1 AAAA
15259744 AGCTTCAAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
18 8 0.40
19 6 0.30
20 6 0.30
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (19 bp):
AAAATAAAAAATAATATAA
Found at i:15259783 original size:6 final size:6
Alignment explanation
Indices: 15259769--15259799 Score: 53
Period size: 6 Copynumber: 5.0 Consensus size: 6
15259759 TATAAAATCT
15259769 AAATCTA AAATTA AAATTA AAATTA AAATTA
1 AAAT-TA AAATTA AAATTA AAATTA AAATTA
15259800 TTATTAAATT
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
6 20 0.83
7 4 0.17
ACGTcount: A:0.65, C:0.03, G:0.00, T:0.32
Consensus pattern (6 bp):
AAATTA
Found at i:15263414 original size:43 final size:43
Alignment explanation
Indices: 15263322--15263468 Score: 100
Period size: 43 Copynumber: 3.4 Consensus size: 43
15263312 GTGATTACAA
* *
15263322 GTAAGACCATATCTGGGACATTAGCATTGTATTGCAATTACGT
1 GTAAGACCATATCTGGGACATTAGCATCGTAATGCAATTACGT
* * * * * *
15263365 GCAAGACCATGTTTGGGACATTGGCATCGTTAAT-CGATTTCGT
1 GTAAGACCATATCTGGGACATTAGCATCG-TAATGCAATTACGT
* * * * * * ** * *
15263408 GTAAGACCTTGTCTAGGACAGTGGCGTCG-ATATGTGATAACAT
1 GTAAGACCATATCTGGGACATTAGCATCGTA-ATGCAATTACGT
15263451 GTAAGACCATATCTGGGA
1 GTAAGACCATATCTGGGA
15263469 TATGGCATTG
Statistics
Matches: 80, Mismatches: 21, Indels: 6
0.75 0.20 0.06
Matches are distributed among these distances:
41 1 0.01
42 2 0.03
43 74 0.93
44 3 0.04
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (43 bp):
GTAAGACCATATCTGGGACATTAGCATCGTAATGCAATTACGT
Found at i:15265322 original size:7 final size:7
Alignment explanation
Indices: 15265292--15265336 Score: 67
Period size: 7 Copynumber: 6.6 Consensus size: 7
15265282 ATGCTACAAC
15265292 AAAA-AG
1 AAAAGAG
15265298 AAAAGA-
1 AAAAGAG
15265304 AAAAGAAG
1 AAAAG-AG
15265312 AAAAGAG
1 AAAAGAG
15265319 AAAAGAG
1 AAAAGAG
15265326 AAAAGAG
1 AAAAGAG
15265333 AAAA
1 AAAA
15265337 CAAAACCTAA
Statistics
Matches: 36, Mismatches: 0, Indels: 5
0.88 0.00 0.12
Matches are distributed among these distances:
6 9 0.25
7 22 0.61
8 5 0.14
ACGTcount: A:0.78, C:0.00, G:0.22, T:0.00
Consensus pattern (7 bp):
AAAAGAG
Found at i:15268821 original size:9 final size:9
Alignment explanation
Indices: 15268809--15268833 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
15268799 CTATTCCATA
15268809 TATTTCATT
1 TATTTCATT
15268818 TATTTCATT
1 TATTTCATT
15268827 TATTTCA
1 TATTTCA
15268834 CATTTTTGTC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.24, C:0.12, G:0.00, T:0.64
Consensus pattern (9 bp):
TATTTCATT
Found at i:15273520 original size:26 final size:26
Alignment explanation
Indices: 15273411--15273512 Score: 177
Period size: 26 Copynumber: 3.9 Consensus size: 26
15273401 CATGAAATTC
15273411 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
15273437 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
15273463 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
*
15273489 TTATCATGGAACATTTACCTAACC
1 TTATCATGAAACATTTACCTAACC
15273513 TTTTATCAAT
Statistics
Matches: 74, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 74 1.00
ACGTcount: A:0.36, C:0.25, G:0.06, T:0.32
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:15279283 original size:26 final size:26
Alignment explanation
Indices: 15279183--15279290 Score: 175
Period size: 26 Copynumber: 4.2 Consensus size: 26
15279173 CATGAAATTC
*
15279183 TTATCATGAAACATTTACCTAACC-A
1 TTATCATGGAACATTTACCTAACCTA
*
15279208 TTATCAT-GAACATTTACCTAACCCA
1 TTATCATGGAACATTTACCTAACCTA
15279233 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGGAACATTTACCTAACCTA
*
15279259 TTATCATGGAACATTTACCTAACCTT
1 TTATCATGGAACATTTACCTAACCTA
15279285 TTATCA
1 TTATCA
15279291 ATTTGTATCA
Statistics
Matches: 78, Mismatches: 3, Indels: 3
0.93 0.04 0.04
Matches are distributed among these distances:
24 15 0.19
25 15 0.19
26 48 0.62
ACGTcount: A:0.35, C:0.24, G:0.06, T:0.35
Consensus pattern (26 bp):
TTATCATGGAACATTTACCTAACCTA
Found at i:15280646 original size:3 final size:3
Alignment explanation
Indices: 15280638--15280667 Score: 51
Period size: 3 Copynumber: 10.0 Consensus size: 3
15280628 TCCCACTCAT
*
15280638 CAC CAC CAC CAC CAC CAC CAC CAT CAC CAC
1 CAC CAC CAC CAC CAC CAC CAC CAC CAC CAC
15280668 ATTGGTCCAA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.33, C:0.63, G:0.00, T:0.03
Consensus pattern (3 bp):
CAC
Found at i:15281233 original size:10 final size:10
Alignment explanation
Indices: 15281213--15281372 Score: 95
Period size: 10 Copynumber: 16.4 Consensus size: 10
15281203 TGATGTGGCA
15281213 AAAAAATTTAT
1 AAAAAA-TTAT
15281224 AAAAAATTAT
1 AAAAAATTAT
15281234 -AAAAATTAT
1 AAAAAATTAT
15281243 --AAAATTAT
1 AAAAAATTAT
*
15281251 --AAAATTTT
1 AAAAAATTAT
15281259 AATAAAA-TAT
1 AA-AAAATTAT
15281269 AAAAAA-TAT
1 AAAAAATTAT
* *
15281278 TAAAAGTTAT
1 AAAAAATTAT
15281288 AAAAAATTAT
1 AAAAAATTAT
**
15281298 AAAAAAGCAT
1 AAAAAATTAT
**
15281308 AAAAAAGCAT
1 AAAAAATTAT
*
15281318 -AAAAATATAA
1 AAAAAAT-TAT
*
15281328 AAAAAATTGT
1 AAAAAATTAT
**
15281338 AAAATTTTAT
1 AAAAAATTAT
* *
15281348 -AAATATCATAA
1 AAAAAAT--TAT
15281359 AAAAAATTAT
1 AAAAAATTAT
15281369 AAAA
1 AAAA
15281373 TGCATCAAAA
Statistics
Matches: 120, Mismatches: 20, Indels: 19
0.75 0.13 0.12
Matches are distributed among these distances:
8 15 0.12
9 30 0.25
10 52 0.43
11 18 0.15
12 5 0.04
ACGTcount: A:0.66, C:0.02, G:0.03, T:0.29
Consensus pattern (10 bp):
AAAAAATTAT
Found at i:15281246 original size:8 final size:8
Alignment explanation
Indices: 15281226--15281301 Score: 55
Period size: 8 Copynumber: 8.5 Consensus size: 8
15281216 AAATTTATAA
15281226 AAAATTAT
1 AAAATTAT
15281234 AAAAATTAT
1 -AAAATTAT
15281243 AAAATTAT
1 AAAATTAT
15281251 AAAATTTTAAT
1 AAAA--TT-AT
15281262 AAAA-TAT
1 AAAATTAT
*
15281269 AAAAAATATT
1 -AAAATTA-T
15281279 AAAAGTTAT
1 AAAA-TTAT
15281288 AAAAAATTAT
1 --AAAATTAT
15281298 AAAA
1 AAAA
15281302 AAGCATAAAA
Statistics
Matches: 57, Mismatches: 1, Indels: 19
0.74 0.01 0.25
Matches are distributed among these distances:
7 2 0.04
8 21 0.37
9 15 0.26
10 9 0.16
11 10 0.18
ACGTcount: A:0.66, C:0.00, G:0.01, T:0.33
Consensus pattern (8 bp):
AAAATTAT
Found at i:15281254 original size:27 final size:26
Alignment explanation
Indices: 15281215--15281301 Score: 77
Period size: 29 Copynumber: 3.2 Consensus size: 26
15281205 ATGTGGCAAA
15281215 AAAATTTATAAAAAATTATAAAAATTAT
1 AAAA-TTAT-AAAAATTATAAAAATTAT
* *
15281243 AAAATTAT-AAAATTTTAATAAAATAT
1 AAAATTATAAAAATTATAA-AAATTAT
* *
15281269 AAAAAATATTAAAAGTTATAAAAAATTAT
1 -AAAATTA-TAAAAATTAT-AAAAATTAT
15281298 AAAA
1 AAAA
15281302 AAGCATAAAA
Statistics
Matches: 48, Mismatches: 6, Indels: 10
0.75 0.09 0.16
Matches are distributed among these distances:
25 9 0.19
26 6 0.12
27 10 0.21
28 9 0.19
29 12 0.25
30 2 0.04
ACGTcount: A:0.66, C:0.00, G:0.01, T:0.33
Consensus pattern (26 bp):
AAAATTATAAAAATTATAAAAATTAT
Found at i:15281368 original size:21 final size:21
Alignment explanation
Indices: 15281344--15281389 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 21
15281334 TTGTAAAATT
15281344 TTATAAATAT-CATAAAAAAAA
1 TTATAAA-ATGCATAAAAAAAA
* *
15281365 TTATAAAATGCATCAAAAAAG
1 TTATAAAATGCATAAAAAAAA
15281386 TTAT
1 TTAT
15281390 TTAACTATTA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
20 2 0.09
21 20 0.91
ACGTcount: A:0.59, C:0.07, G:0.04, T:0.30
Consensus pattern (21 bp):
TTATAAAATGCATAAAAAAAA
Found at i:15281604 original size:10 final size:10
Alignment explanation
Indices: 15281594--15281666 Score: 55
Period size: 10 Copynumber: 7.4 Consensus size: 10
15281584 TTTCTTTATT
15281594 TTTTATAAT-
1 TTTTATAATA
*
15281603 TTTCT-TACTA
1 TTT-TATAATA
*
15281613 TTTTATAAAA
1 TTTTATAATA
15281623 TTTTATAATTA
1 TTTTATAA-TA
*
15281634 TTTTCT-ATA
1 TTTTATAATA
15281643 TTTTATAATA
1 TTTTATAATA
*
15281653 CTTTT-CAATA
1 -TTTTATAATA
15281663 TTTT
1 TTTT
15281667 TACGATATTA
Statistics
Matches: 51, Mismatches: 7, Indels: 12
0.73 0.10 0.17
Matches are distributed among these distances:
9 18 0.35
10 23 0.45
11 10 0.20
ACGTcount: A:0.32, C:0.07, G:0.00, T:0.62
Consensus pattern (10 bp):
TTTTATAATA
Found at i:15281616 original size:19 final size:19
Alignment explanation
Indices: 15281557--15281620 Score: 62
Period size: 19 Copynumber: 3.4 Consensus size: 19
15281547 GTACGATAAT
* *
15281557 TTTTATAATTTTTTTACGAA
1 TTTTATAATTTTCTTAC-TA
*
15281577 TTTTAT-A-TTTCTTTA-TT
1 TTTTATAATTTTC-TTACTA
15281594 TTTTATAATTTTCTTACTA
1 TTTTATAATTTTCTTACTA
15281613 TTTTATAA
1 TTTTATAA
15281621 AATTTTATAA
Statistics
Matches: 36, Mismatches: 4, Indels: 9
0.73 0.08 0.18
Matches are distributed among these distances:
17 6 0.17
18 7 0.19
19 17 0.47
20 6 0.17
ACGTcount: A:0.27, C:0.06, G:0.02, T:0.66
Consensus pattern (19 bp):
TTTTATAATTTTCTTACTA
Found at i:15281647 original size:20 final size:20
Alignment explanation
Indices: 15281622--15281666 Score: 65
Period size: 20 Copynumber: 2.2 Consensus size: 20
15281612 ATTTTATAAA
*
15281622 ATTTTATAATTA-TTTTCTAT
1 ATTTTATAA-TACTTTTCAAT
15281642 ATTTTATAATACTTTTCAAT
1 ATTTTATAATACTTTTCAAT
15281662 ATTTT
1 ATTTT
15281667 TACGATATTA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
19 2 0.09
20 21 0.91
ACGTcount: A:0.31, C:0.07, G:0.00, T:0.62
Consensus pattern (20 bp):
ATTTTATAATACTTTTCAAT
Found at i:15298532 original size:16 final size:16
Alignment explanation
Indices: 15298519--15298551 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
15298509 CGGTTATTAC
*
15298519 ATATATTTTATATTTA
1 ATATATGTTATATTTA
15298535 ATATATGTTAT-TTTA
1 ATATATGTTATATTTA
15298550 AT
1 AT
15298552 GGCAAAATGG
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 6 0.38
16 10 0.62
ACGTcount: A:0.36, C:0.00, G:0.03, T:0.61
Consensus pattern (16 bp):
ATATATGTTATATTTA
Found at i:15299460 original size:44 final size:45
Alignment explanation
Indices: 15299412--15299525 Score: 133
Period size: 45 Copynumber: 2.6 Consensus size: 45
15299402 GAAACAAGTG
* *
15299412 AGACCATAGCTG-AAGGCATTAT-GACATCACGATTCTATCGAGTA
1 AGACCATAGCTGAAAGACATTATGGA-ATCACGATTCTAACGAGTA
* *
15299456 AGACCATGGCTGAAAGACGTTATGGAATCACGATTCTAACGAGTA
1 AGACCATAGCTGAAAGACATTATGGAATCACGATTCTAACGAGTA
* * **
15299501 AGGCTATAATTGAAAGACATTATGG
1 AGACCATAGCTGAAAGACATTATGG
15299526 CAACATGACG
Statistics
Matches: 58, Mismatches: 10, Indels: 3
0.82 0.14 0.04
Matches are distributed among these distances:
44 11 0.19
45 45 0.78
46 2 0.03
ACGTcount: A:0.36, C:0.17, G:0.23, T:0.25
Consensus pattern (45 bp):
AGACCATAGCTGAAAGACATTATGGAATCACGATTCTAACGAGTA
Found at i:15303741 original size:23 final size:23
Alignment explanation
Indices: 15303707--15303787 Score: 92
Period size: 23 Copynumber: 3.5 Consensus size: 23
15303697 AAAGCTGATG
15303707 AACAGTAAGCTCTATTGAGCTGA
1 AACAGTAAGCTCTATTGAGCTGA
* * * *
15303730 AACGGTAAGCTCCAATGAACTGAA
1 AACAGTAAGCTCTATTGAGCTG-A
* *
15303754 AACAATAAGCTCTTTTGAGCTG-
1 AACAGTAAGCTCTATTGAGCTGA
15303776 AACAGTAAGCTC
1 AACAGTAAGCTC
15303788 ATACGAGCTG
Statistics
Matches: 46, Mismatches: 11, Indels: 3
0.77 0.18 0.05
Matches are distributed among these distances:
22 11 0.24
23 18 0.39
24 17 0.37
ACGTcount: A:0.37, C:0.20, G:0.20, T:0.23
Consensus pattern (23 bp):
AACAGTAAGCTCTATTGAGCTGA
Found at i:15307510 original size:19 final size:19
Alignment explanation
Indices: 15307486--15307524 Score: 69
Period size: 19 Copynumber: 2.1 Consensus size: 19
15307476 ATACCATGTT
15307486 CTGAACGCAGTTTTCAACA
1 CTGAACGCAGTTTTCAACA
*
15307505 CTGAACGCAGTTTTCGACA
1 CTGAACGCAGTTTTCAACA
15307524 C
1 C
15307525 ATTTGACTCT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.28, C:0.28, G:0.18, T:0.26
Consensus pattern (19 bp):
CTGAACGCAGTTTTCAACA
Found at i:15311454 original size:23 final size:24
Alignment explanation
Indices: 15311421--15311482 Score: 74
Period size: 23 Copynumber: 2.7 Consensus size: 24
15311411 TGATGAACAG
*
15311421 TAAGCTTTATTGAGTTAAAAC-GA
1 TAAGCTCTATTGAGTTAAAACGGA
* *
15311444 TAAGCTCTATTGAGCTGAAACGGA
1 TAAGCTCTATTGAGTTAAAACGGA
*
15311468 -AAGCTCTTTTGAGTT
1 TAAGCTCTATTGAGTT
15311483 GAACAGTAAG
Statistics
Matches: 33, Mismatches: 5, Indels: 2
0.82 0.12 0.05
Matches are distributed among these distances:
23 31 0.94
24 2 0.06
ACGTcount: A:0.32, C:0.13, G:0.21, T:0.34
Consensus pattern (24 bp):
TAAGCTCTATTGAGTTAAAACGGA
Found at i:15311507 original size:22 final size:22
Alignment explanation
Indices: 15311482--15311574 Score: 73
Period size: 22 Copynumber: 4.1 Consensus size: 22
15311472 TCTTTTGAGT
*
15311482 TGAACAGTAAGGTCATACGAGC
1 TGAACAGTAAGCTCATACGAGC
*
15311504 TGAA-ATGGTAAGCTCCA-ATGAGC
1 TGAACA--GTAAGCT-CATACGAGC
* * * *
15311527 TAAAAAAAGTAAGCTCTTTCGAGC
1 T--GAACAGTAAGCTCATACGAGC
15311551 TGAACAGTAAGCTCATACGAGC
1 TGAACAGTAAGCTCATACGAGC
15311573 TG
1 TG
15311575 TGGTGAGTCC
Statistics
Matches: 54, Mismatches: 10, Indels: 14
0.69 0.13 0.18
Matches are distributed among these distances:
21 1 0.02
22 23 0.43
23 13 0.24
24 14 0.26
25 2 0.04
26 1 0.02
ACGTcount: A:0.37, C:0.18, G:0.24, T:0.22
Consensus pattern (22 bp):
TGAACAGTAAGCTCATACGAGC
Found at i:15317470 original size:47 final size:47
Alignment explanation
Indices: 15317416--15317770 Score: 284
Period size: 47 Copynumber: 7.6 Consensus size: 47
15317406 TATTTGGGCG
* *
15317416 TCCGAACTCGTTAAGTTGAGTCCGAGTTCGTGAAATGTAACTGGGAA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCCTGAAATGTAACTGGGAA
* * * * *
15317463 TCCGAACTTGTTAAGTTGAGTCCGAGTTCACT--TATG-GA-TGCGAA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-CTGAAATGTAACTGGGAA
* * * *
15317507 TGCCCGAACTCGTTGAGTTGAGTCCGAGTTCTTGAGATGTAACTAGGCA
1 T--CCGAACTCGTTGAGTTGAGTCCGAGTTCCTGAAATGTAACTGGGAA
* * *
15317556 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACT--TATG-GA-TGCGAA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-CTGAAATGTAACTGGGAA
* * * *
15317600 CGTCTGAACTCGTTGAGTTGAGTCCGAGTTCGTGAAATGTAACTAGGCA
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCCTGAAATGTAACTGGGAA
* * * * *
15317649 TCCAAACTTGTTGAGTTGAGTCCGAGTTCACT--TATG-GA-TGCGAA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-CTGAAATGTAACTGGGAA
* * * *
15317693 CGTCTGAACTCGTTGAGTTGAGTCCGAGTTCGTGAAATGTAACTAGGCA
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCCTGAAATGTAACTGGGAA
* *
15317742 TCCAAACTTGTTGAGTTGAGTCCGAGTTC
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC
15317771 ACTTATGGAT
Statistics
Matches: 240, Mismatches: 47, Indels: 42
0.73 0.14 0.13
Matches are distributed among these distances:
44 12 0.05
45 6 0.03
46 89 0.37
47 117 0.49
48 6 0.03
49 10 0.04
ACGTcount: A:0.24, C:0.19, G:0.27, T:0.30
Consensus pattern (47 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCCTGAAATGTAACTGGGAA
Found at i:15317528 original size:93 final size:93
Alignment explanation
Indices: 15317417--15317817 Score: 667
Period size: 93 Copynumber: 4.3 Consensus size: 93
15317407 ATTTGGGCGT
* * * * *
15317417 CCGAACTCGTTAAGTTGAGTCCGAGTTCGTGAAATGTAACTGGGAATCCGAACTTGTTAAGTTGA
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCGTGAAATGTAACTAGGCATCCAAACTTGTTGAGTTGA
*
15317482 GTCCGAGTTCACTTATGGATGCGAATGC
66 GTCCGAGTTCACTTATGGATGCGAACGC
* * * *
15317510 CCGAACTCGTTGAGTTGAGTCCGAGTTCTTGAGATGTAACTAGGCATCCGAACTCGTTGAGTTGA
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCGTGAAATGTAACTAGGCATCCAAACTTGTTGAGTTGA
*
15317575 GTCCGAGTTCACTTATGGATGCGAACGT
66 GTCCGAGTTCACTTATGGATGCGAACGC
*
15317603 CTGAACTCGTTGAGTTGAGTCCGAGTTCGTGAAATGTAACTAGGCATCCAAACTTGTTGAGTTGA
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCGTGAAATGTAACTAGGCATCCAAACTTGTTGAGTTGA
*
15317668 GTCCGAGTTCACTTATGGATGCGAACGT
66 GTCCGAGTTCACTTATGGATGCGAACGC
*
15317696 CTGAACTCGTTGAGTTGAGTCCGAGTTCGTGAAATGTAACTAGGCATCCAAACTTGTTGAGTTGA
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCGTGAAATGTAACTAGGCATCCAAACTTGTTGAGTTGA
15317761 GTCCGAGTTCACTTATGGATGCGAACGC
66 GTCCGAGTTCACTTATGGATGCGAACGC
*
15317789 CCGATCTCGTTGAGTTGAGTCCGAGTTCG
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCG
15317818 CTTATGGGCG
Statistics
Matches: 291, Mismatches: 17, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 291 1.00
ACGTcount: A:0.24, C:0.19, G:0.27, T:0.29
Consensus pattern (93 bp):
CCGAACTCGTTGAGTTGAGTCCGAGTTCGTGAAATGTAACTAGGCATCCAAACTTGTTGAGTTGA
GTCCGAGTTCACTTATGGATGCGAACGC
Found at i:15317531 original size:46 final size:46
Alignment explanation
Indices: 15317464--15317824 Score: 271
Period size: 46 Copynumber: 7.8 Consensus size: 46
15317454 AACTGGGAAT
* *
15317464 CCGAACTTGTTAAGTTGAGTCCGAGTTCACTTATGGATGCGAATGC
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGC
*
15317510 CCGAACTCGTTGAGTTGAGTCCGAGTT--C-T-TGAGATG-TAACTAGGC
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATG-GATGCGAA-T--GC
* *
15317555 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGT
1 --CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGC
* * * * *
15317603 CTGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--AATG-TAACTAGGC
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--GC
* * * *
15317648 ATCCAAACTTGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGT
1 --CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGC
* * * * *
15317696 CTGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--AATG-TAACTAGGC
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--GC
* * *
15317741 ATCCAAACTTGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
1 --CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGC
* *
15317789 CCGATCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
15317825 GCGGGTTACA
Statistics
Matches: 243, Mismatches: 43, Indels: 58
0.71 0.12 0.17
Matches are distributed among these distances:
42 8 0.03
43 12 0.05
44 1 0.00
45 8 0.03
46 109 0.45
47 77 0.32
48 8 0.03
49 1 0.00
50 11 0.05
51 8 0.03
ACGTcount: A:0.23, C:0.20, G:0.27, T:0.30
Consensus pattern (46 bp):
CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGC
Found at i:15321327 original size:29 final size:29
Alignment explanation
Indices: 15321278--15321336 Score: 91
Period size: 29 Copynumber: 2.0 Consensus size: 29
15321268 TCATGGAAGA
* * *
15321278 GGTGAAAAACTTGTTCGTTGAGAGTTCGT
1 GGTGAAAAACTTGATCATTGAGAATTCGT
15321307 GGTGAAAAACTTGATCATTGAGAATTCGT
1 GGTGAAAAACTTGATCATTGAGAATTCGT
15321336 G
1 G
15321337 TCAATGTGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
29 27 1.00
ACGTcount: A:0.29, C:0.10, G:0.29, T:0.32
Consensus pattern (29 bp):
GGTGAAAAACTTGATCATTGAGAATTCGT
Found at i:15321455 original size:24 final size:24
Alignment explanation
Indices: 15321427--15321478 Score: 86
Period size: 24 Copynumber: 2.2 Consensus size: 24
15321417 TTTCTAAAAG
* *
15321427 ATTTAGTATTTATTAGTAGAATAT
1 ATTTAGTATTTATTAGCACAATAT
15321451 ATTTAGTATTTATTAGCACAATAT
1 ATTTAGTATTTATTAGCACAATAT
15321475 ATTT
1 ATTT
15321479 TACATTGATT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.37, C:0.04, G:0.10, T:0.50
Consensus pattern (24 bp):
ATTTAGTATTTATTAGCACAATAT
Found at i:15326876 original size:23 final size:23
Alignment explanation
Indices: 15326845--15326906 Score: 106
Period size: 23 Copynumber: 2.7 Consensus size: 23
15326835 AGAATTAAAA
15326845 AATTTAATTAATTAATTAATACT
1 AATTTAATTAATTAATTAATACT
*
15326868 AGTTTAATTAATTAATTAATACT
1 AATTTAATTAATTAATTAATACT
15326891 AATTTAATTTAATTAA
1 AATTTAA-TTAATTAA
15326907 CCGTTTGAAC
Statistics
Matches: 36, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
23 28 0.78
24 8 0.22
ACGTcount: A:0.47, C:0.03, G:0.02, T:0.48
Consensus pattern (23 bp):
AATTTAATTAATTAATTAATACT
Found at i:15336799 original size:86 final size:85
Alignment explanation
Indices: 15336686--15336865 Score: 335
Period size: 86 Copynumber: 2.1 Consensus size: 85
15336676 AATATAATTG
15336686 TAATTATTATAATTTTATCTTTAATATTAATAATTTGAAATTAATAATAAACATGAAACATGTTT
1 TAATTATTATAATTTTATCTTTAATATTAATAATTTGAAATTAATAATAAACATGAAACATGTTT
15336751 GTTAAGTATTAATGTTGATA
66 GTTAAGTATTAATGTTGATA
*
15336771 TAATTATTATAATTTTTATCTTTAATATTAATAATTTGAAATTAATAATAAACATGAAACCTGTT
1 TAATTATTATAA-TTTTATCTTTAATATTAATAATTTGAAATTAATAATAAACATGAAACATGTT
15336836 TGTTAAGTATTAATGTTGATA
65 TGTTAAGTATTAATGTTGATA
15336857 TAATT-TTAT
1 TAATTATTAT
15336866 GTGGAGAGAA
Statistics
Matches: 93, Mismatches: 1, Indels: 2
0.97 0.01 0.02
Matches are distributed among these distances:
85 16 0.17
86 77 0.83
ACGTcount: A:0.41, C:0.04, G:0.08, T:0.47
Consensus pattern (85 bp):
TAATTATTATAATTTTATCTTTAATATTAATAATTTGAAATTAATAATAAACATGAAACATGTTT
GTTAAGTATTAATGTTGATA
Found at i:15337008 original size:51 final size:50
Alignment explanation
Indices: 15336932--15337034 Score: 172
Period size: 51 Copynumber: 2.0 Consensus size: 50
15336922 TATACGTAAA
15336932 AATTATCATACACCAACAATATTTTTTAGGGTA-AATAACATTAAACCAAC
1 AATTATCATACACCAACAATATTTTTTAGGG-ACAATAACATTAAACCAAC
*
15336982 AATTATACATACACCAACAATGTTTTTTAGGGACAATAACATTAAACCAAC
1 AATTAT-CATACACCAACAATATTTTTTAGGGACAATAACATTAAACCAAC
15337033 AA
1 AA
15337035 GTAATTTTAG
Statistics
Matches: 50, Mismatches: 1, Indels: 3
0.93 0.02 0.06
Matches are distributed among these distances:
50 7 0.14
51 43 0.86
ACGTcount: A:0.47, C:0.18, G:0.07, T:0.28
Consensus pattern (50 bp):
AATTATCATACACCAACAATATTTTTTAGGGACAATAACATTAAACCAAC
Found at i:15337031 original size:33 final size:33
Alignment explanation
Indices: 15336994--15337101 Score: 116
Period size: 33 Copynumber: 3.3 Consensus size: 33
15336984 TTATACATAC
15336994 ACCAACAATGTTTTTTAGGGACAATAACATTAA
1 ACCAACAATGTTTTTTAGGGACAATAACATTAA
* * *
15337027 ACCAACAA-GTAATTTTA-GGTCAATTATACA-TAC
1 ACCAACAATGT-TTTTTAGGGACAA-TA-ACATTAA
*
15337060 ACCAACAATATTTTTTAGGGTA-AATAACATTAA
1 ACCAACAATGTTTTTTAGGG-ACAATAACATTAA
15337093 ACCAACAAT
1 ACCAACAAT
15337102 TATACATACA
Statistics
Matches: 61, Mismatches: 7, Indels: 14
0.74 0.09 0.17
Matches are distributed among these distances:
32 10 0.16
33 43 0.70
34 8 0.13
ACGTcount: A:0.44, C:0.17, G:0.09, T:0.30
Consensus pattern (33 bp):
ACCAACAATGTTTTTTAGGGACAATAACATTAA
Found at i:15337106 original size:51 final size:51
Alignment explanation
Indices: 15337047--15337151 Score: 185
Period size: 51 Copynumber: 2.1 Consensus size: 51
15337037 AATTTTAGGT
15337047 CAATTATACATACACCAACAATATTTTTTAGGGTA-AATAACATTAAACCAA
1 CAATTATACATACACCAACAATATTTTTTAGGG-ACAATAACATTAAACCAA
*
15337098 CAATTATACATACACCAACAATGTTTTTTAGGGACAATAACATTAAACCAA
1 CAATTATACATACACCAACAATATTTTTTAGGGACAATAACATTAAACCAA
15337149 CAA
1 CAA
15337152 GTAATTTTAG
Statistics
Matches: 52, Mismatches: 1, Indels: 2
0.95 0.02 0.04
Matches are distributed among these distances:
50 1 0.02
51 51 0.98
ACGTcount: A:0.47, C:0.19, G:0.07, T:0.28
Consensus pattern (51 bp):
CAATTATACATACACCAACAATATTTTTTAGGGACAATAACATTAAACCAA
Found at i:15337148 original size:33 final size:33
Alignment explanation
Indices: 15337111--15337218 Score: 116
Period size: 33 Copynumber: 3.3 Consensus size: 33
15337101 TTATACATAC
15337111 ACCAACAATGTTTTTTAGGGACAATAACATTAA
1 ACCAACAATGTTTTTTAGGGACAATAACATTAA
* * *
15337144 ACCAACAA-GTAATTTTA-GGTCAATTATACA-TAC
1 ACCAACAATGT-TTTTTAGGGACAA-TA-ACATTAA
*
15337177 ACCAACAATATTTTTTAGGGTA-AATAACATTAA
1 ACCAACAATGTTTTTTAGGG-ACAATAACATTAA
15337210 ACCAACAAT
1 ACCAACAAT
15337219 TATACATACA
Statistics
Matches: 61, Mismatches: 7, Indels: 14
0.74 0.09 0.17
Matches are distributed among these distances:
32 10 0.16
33 43 0.70
34 8 0.13
ACGTcount: A:0.44, C:0.17, G:0.09, T:0.30
Consensus pattern (33 bp):
ACCAACAATGTTTTTTAGGGACAATAACATTAA
Found at i:15337223 original size:51 final size:51
Alignment explanation
Indices: 15337164--15337268 Score: 185
Period size: 51 Copynumber: 2.1 Consensus size: 51
15337154 AATTTTAGGT
15337164 CAATTATACATACACCAACAATATTTTTTAGGGTA-AATAACATTAAACCAA
1 CAATTATACATACACCAACAATATTTTTTAGGG-ACAATAACATTAAACCAA
*
15337215 CAATTATACATACACCAACAATGTTTTTTAGGGACAATAACATTAAACCAA
1 CAATTATACATACACCAACAATATTTTTTAGGGACAATAACATTAAACCAA
15337266 CAA
1 CAA
15337269 GTAATTTTAG
Statistics
Matches: 52, Mismatches: 1, Indels: 2
0.95 0.02 0.04
Matches are distributed among these distances:
50 1 0.02
51 51 0.98
ACGTcount: A:0.47, C:0.19, G:0.07, T:0.28
Consensus pattern (51 bp):
CAATTATACATACACCAACAATATTTTTTAGGGACAATAACATTAAACCAA
Found at i:15337312 original size:117 final size:117
Alignment explanation
Indices: 15336932--15337302 Score: 735
Period size: 117 Copynumber: 3.2 Consensus size: 117
15336922 TATACGTAAA
15336932 AATTAT-CATACACCAACAATATTTTTTAGGGTAAATAACATTAAACCAACAATTATACATACAC
1 AATTATACATACACCAACAATATTTTTTAGGGTAAATAACATTAAACCAACAATTATACATACAC
15336996 CAACAATGTTTTTTAGGGACAATAACATTAAACCAACAAGTAATTTTAGGTC
66 CAACAATGTTTTTTAGGGACAATAACATTAAACCAACAAGTAATTTTAGGTC
15337048 AATTATACATACACCAACAATATTTTTTAGGGTAAATAACATTAAACCAACAATTATACATACAC
1 AATTATACATACACCAACAATATTTTTTAGGGTAAATAACATTAAACCAACAATTATACATACAC
15337113 CAACAATGTTTTTTAGGGACAATAACATTAAACCAACAAGTAATTTTAGGTC
66 CAACAATGTTTTTTAGGGACAATAACATTAAACCAACAAGTAATTTTAGGTC
15337165 AATTATACATACACCAACAATATTTTTTAGGGTAAATAACATTAAACCAACAATTATACATACAC
1 AATTATACATACACCAACAATATTTTTTAGGGTAAATAACATTAAACCAACAATTATACATACAC
15337230 CAACAATGTTTTTTAGGGACAATAACATTAAACCAACAAGTAATTTTAGGTC
66 CAACAATGTTTTTTAGGGACAATAACATTAAACCAACAAGTAATTTTAGGTC
15337282 AATTATACATACACCAACAAT
1 AATTATACATACACCAACAAT
15337303 TAATTTTAGG
Statistics
Matches: 254, Mismatches: 0, Indels: 1
1.00 0.00 0.00
Matches are distributed among these distances:
116 6 0.02
117 248 0.98
ACGTcount: A:0.45, C:0.18, G:0.08, T:0.30
Consensus pattern (117 bp):
AATTATACATACACCAACAATATTTTTTAGGGTAAATAACATTAAACCAACAATTATACATACAC
CAACAATGTTTTTTAGGGACAATAACATTAAACCAACAAGTAATTTTAGGTC
Found at i:15337313 original size:33 final size:33
Alignment explanation
Indices: 15337215--15337324 Score: 127
Period size: 33 Copynumber: 3.3 Consensus size: 33
15337205 ATTAAACCAA
* *
15337215 CAATTATACATACACCAACAATGT-TTTTTAGGGA
1 CAATTATACATACACCAACAAT-TAATTTTA-GGT
* *
15337249 CAA-TA-ACATTAAACCAACAAGTAATTTTAGGT
1 CAATTATACA-TACACCAACAATTAATTTTAGGT
15337281 CAATTATACATACACCAACAATTAATTTTAGGT
1 CAATTATACATACACCAACAATTAATTTTAGGT
*
15337314 CATTTATACAT
1 CAATTATACAT
15337325 GCTTTATAAT
Statistics
Matches: 65, Mismatches: 7, Indels: 9
0.80 0.09 0.11
Matches are distributed among these distances:
32 9 0.14
33 50 0.77
34 6 0.09
ACGTcount: A:0.42, C:0.17, G:0.08, T:0.33
Consensus pattern (33 bp):
CAATTATACATACACCAACAATTAATTTTAGGT
Found at i:15340394 original size:59 final size:60
Alignment explanation
Indices: 15340331--15341837 Score: 291
Period size: 61 Copynumber: 25.1 Consensus size: 60
15340321 TTTATGCAGA
15340331 ATATA-ATTTTCAAGTTATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATC
1 ATATATATTTTCAAGTTATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATC
** * * * * *
15340390 ATATATTATGATTTC-AG-TA-A-A-TTAAT-ATAAGAATATTATATTAAGAATTTT--ATTA-A
1 ATATA-TAT--TTTCAAGTTATATATTTAATAATAATTATGTTA-ATTTA-TATTTTACAGTATC
15340446 ATTATATATTTT-AA-TTAAAATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATC
1 A-TATATATTTTCAAGTT---ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATC
** * * * * * *
15340508 ATATATTATGATTTC-AG-TA-A-A-TTAAT-ATAAGAATATTATATTAAGAATTT-CATTA-A
1 ATATA-TAT--TTTCAAGTTATATATTTAATAATAATTATGTTA-ATTTATATTTTACAGTATC
15340564 ATTATATATTTT-AA-TTAAAATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATC
1 A-TATATATTTTCAAGTT---ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATC
** * * * * *
15340626 ATATATTATGATTTC-AG-TA-A-A-TTAAT-ATAAGAATATTATATTAAGAATTTT--ATTA-A
1 ATATA-TAT--TTTCAAGTTATATATTTAATAATAATTATGTTA-ATTTA-TATTTTACAGTATC
15340682 ATTATATATTTT-AA-TTAAAATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATC
1 A-TATATATTTTCAAGTT---ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATC
* * * ** * * *
15340744 ATATATTATGATTTC-AG-TAAATTAATATAAGAAT-ATTAT-CCAATTAAGAATTTT--ATTA-
1 ATATA-TAT--TTTCAAGTTATA-T-ATTTAATAATAATTATGTTAATTTA-TATTTTACAGTAT
*
15340802 A
60 C
15340803 ATTATATATTTT-AA-TTAAAATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATC
1 A-TATATATTTTCAAGTT---ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATC
* * * ** * * * * *
15340865 ATATATTATGATTTC-AG-TAAATTAATATAAGAAT-ATTAT-CCAATTAAGAATTT-CATTA-A
1 ATATA-TAT--TTTCAAGTTATA-T-ATTTAATAATAATTATGTTAATTTATATTTTACAGTATC
15340924 ATTATATATTTT-AA-TTAAAATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATC
1 A-TATATATTTTCAAGTT---ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATC
* * * ** * * * * *
15340986 ATATATTATGATTTC-AG-TAAATTAATATAAGAAT-ATTAT-CCAATTAAGAATTT-CATTA-A
1 ATATA-TAT--TTTCAAGTTATA-T-ATTTAATAATAATTATGTTAATTTATATTTTACAGTATC
15341045 ATTATATATTTT-AA-TTAAAATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATC
1 A-TATATATTTTCAAGTT---ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATC
* * * ** * * * * *
15341107 ATATATTATGATTTC-AG-TAAATTAATATAAGAAT-ATTAT-CCAATTAAGAATTT-CATTA-A
1 ATATA-TAT--TTTCAAGTTATA-T-ATTTAATAATAATTATGTTAATTTATATTTTACAGTATC
15341166 ATTATATATTTT-AA-TTAAAATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATC
1 A-TATATATTTTCAAGTT---ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATC
** * * *
15341228 ATATATTATGATTTC-AG-TA-A-A-TTAAT-ATAAGAATATTAATTATTAAGAATTTT--ATTA
1 ATATA-TAT--TTTCAAGTTATATATTTAATAATAATTATGTTAA-T-TT-A-TATTTTACAGTA
*
15341285 -A
59 TC
15341286 ATTATATATTTT-AA-TTAAAATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATC
1 A-TATATATTTTCAAGTT---ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATC
* * * ** * * *
15341348 ATATATTATGATTTC-AG-TAAATTAATATAAGAAT-ATTAT-CCAATTAAGAATTTT--ATTA-
1 ATATA-TAT--TTTCAAGTTATA-T-ATTTAATAATAATTATGTTAATTTA-TATTTTACAGTAT
*
15341406 A
60 C
15341407 ATTATATATTTT-AA-TTAAAATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATC
1 A-TATATATTTTCAAGTT---ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATC
* * * ** * * * * *
15341469 ATATATTATGATTTC-AG-TAAATTAATATAAGAAT-ATTAT-CCAATTAAGAATTT-CATTA-A
1 ATATA-TAT--TTTCAAGTTATA-T-ATTTAATAATAATTATGTTAATTTATATTTTACAGTATC
15341528 ATTATATATTTT-AA-TTAAAATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATC
1 A-TATATATTTTCAAGTT---ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATC
* * * ** * * * * *
15341590 ATATATTATGATTTC-AG-TAAATTAATATAAGAAT-ATTAT-CCAATTAAGAATTT-CATTA-A
1 ATATA-TAT--TTTCAAGTTATA-T-ATTTAATAATAATTATGTTAATTTATATTTTACAGTATC
15341649 ATTATATATTTT-AA-TTAAAATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATC
1 A-TATATATTTTCAAGTT---ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATC
* * * ** * * * * *
15341711 ATATATTATGATTTC-AG-TAAATTAATATAAGAAT-ATTAT-CCAATTAAGAATTT-CATTA-A
1 ATATA-TAT--TTTCAAGTTATA-T-ATTTAATAATAATTATGTTAATTTATATTTTACAGTATC
15341770 ATTATATATTTT-AA-TTAAAATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATC
1 A-TATATATTTTCAAGTT---ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATC
15341832 ATATAT
1 ATATAT
15341838 TATGATTTCA
Statistics
Matches: 1017, Mismatches: 212, Indels: 436
0.61 0.13 0.26
Matches are distributed among these distances:
54 15 0.01
56 17 0.02
57 102 0.10
58 108 0.11
59 137 0.13
60 180 0.18
61 214 0.21
62 111 0.11
63 78 0.08
64 55 0.05
ACGTcount: A:0.44, C:0.04, G:0.05, T:0.47
Consensus pattern (60 bp):
ATATATATTTTCAAGTTATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATC
Found at i:15340464 original size:18 final size:17
Alignment explanation
Indices: 15340436--15340470 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
15340426 TATATTAAGA
*
15340436 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
15340453 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
15340471 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:15340700 original size:18 final size:17
Alignment explanation
Indices: 15340672--15340706 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
15340662 TATATTAAGA
*
15340672 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
15340689 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
15340707 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:15340821 original size:18 final size:17
Alignment explanation
Indices: 15340793--15340827 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
15340783 CCAATTAAGA
*
15340793 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
15340810 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
15340828 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:15340827 original size:121 final size:121
Alignment explanation
Indices: 15340347--15341931 Score: 2989
Period size: 121 Copynumber: 13.2 Consensus size: 121
15340337 TTTTCAAGTT
15340347 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTCAGTAAAT
1 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTCAGTAAAT
*
15340412 TAATATAAGAATATTAT---ATTAAGAATTTTATTAAATTATATATTTTAATTAAA
66 TAATATAAGAATATTATCCAATTAAGAATTTCATTAAATTATATATTTTAATTAAA
15340465 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTCAGTAAAT
1 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTCAGTAAAT
15340530 TAATATAAGAATATTAT---ATTAAGAATTTCATTAAATTATATATTTTAATTAAA
66 TAATATAAGAATATTATCCAATTAAGAATTTCATTAAATTATATATTTTAATTAAA
15340583 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTCAGTAAAT
1 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTCAGTAAAT
*
15340648 TAATATAAGAATATTAT---ATTAAGAATTTTATTAAATTATATATTTTAATTAAA
66 TAATATAAGAATATTATCCAATTAAGAATTTCATTAAATTATATATTTTAATTAAA
15340701 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTCAGTAAAT
1 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTCAGTAAAT
*
15340766 TAATATAAGAATATTATCCAATTAAGAATTTTATTAAATTATATATTTTAATTAAA
66 TAATATAAGAATATTATCCAATTAAGAATTTCATTAAATTATATATTTTAATTAAA
15340822 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTCAGTAAAT
1 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTCAGTAAAT
15340887 TAATATAAGAATATTATCCAATTAAGAATTTCATTAAATTATATATTTTAATTAAA
66 TAATATAAGAATATTATCCAATTAAGAATTTCATTAAATTATATATTTTAATTAAA
15340943 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTCAGTAAAT
1 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTCAGTAAAT
15341008 TAATATAAGAATATTATCCAATTAAGAATTTCATTAAATTATATATTTTAATTAAA
66 TAATATAAGAATATTATCCAATTAAGAATTTCATTAAATTATATATTTTAATTAAA
15341064 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTCAGTAAAT
1 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTCAGTAAAT
15341129 TAATATAAGAATATTATCCAATTAAGAATTTCATTAAATTATATATTTTAATTAAA
66 TAATATAAGAATATTATCCAATTAAGAATTTCATTAAATTATATATTTTAATTAAA
15341185 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTCAGTAAAT
1 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTCAGTAAAT
* *
15341250 TAATATAAGAATATTAAT--TATTAAGAATTTTATTAAATTATATATTTTAATTAAA
66 TAATATAAGAATATT-ATCCAATTAAGAATTTCATTAAATTATATATTTTAATTAAA
15341305 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTCAGTAAAT
1 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTCAGTAAAT
*
15341370 TAATATAAGAATATTATCCAATTAAGAATTTTATTAAATTATATATTTTAATTAAA
66 TAATATAAGAATATTATCCAATTAAGAATTTCATTAAATTATATATTTTAATTAAA
15341426 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTCAGTAAAT
1 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTCAGTAAAT
15341491 TAATATAAGAATATTATCCAATTAAGAATTTCATTAAATTATATATTTTAATTAAA
66 TAATATAAGAATATTATCCAATTAAGAATTTCATTAAATTATATATTTTAATTAAA
15341547 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTCAGTAAAT
1 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTCAGTAAAT
15341612 TAATATAAGAATATTATCCAATTAAGAATTTCATTAAATTATATATTTTAATTAAA
66 TAATATAAGAATATTATCCAATTAAGAATTTCATTAAATTATATATTTTAATTAAA
15341668 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTCAGTAAAT
1 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTCAGTAAAT
15341733 TAATATAAGAATATTATCCAATTAAGAATTTCATTAAATTATATATTTTAATTAAA
66 TAATATAAGAATATTATCCAATTAAGAATTTCATTAAATTATATATTTTAATTAAA
15341789 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTCAGTAAAT
1 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTCAGTAAAT
* *
15341854 TAATATAAGAATATTAAT--TATTAAGAATTTTATTAAATTATATATTTTAATTAAA
66 TAATATAAGAATATT-ATCCAATTAAGAATTTCATTAAATTATATATTTTAATTAAA
15341909 ATATATTTAATAATAATTATGTT
1 ATATATTTAATAATAATTATGTT
15341932 TAAATATGAT
Statistics
Matches: 1451, Mismatches: 9, Indels: 12
0.99 0.01 0.01
Matches are distributed among these distances:
118 316 0.22
119 2 0.00
120 173 0.12
121 956 0.66
122 4 0.00
ACGTcount: A:0.44, C:0.04, G:0.05, T:0.47
Consensus pattern (121 bp):
ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTCAGTAAAT
TAATATAAGAATATTATCCAATTAAGAATTTCATTAAATTATATATTTTAATTAAA
Found at i:15341304 original size:18 final size:17
Alignment explanation
Indices: 15341276--15341310 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
15341266 ATTATTAAGA
*
15341276 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
15341293 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
15341311 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:15341413 original size:604 final size:604
Alignment explanation
Indices: 15340347--15341931 Score: 3105
Period size: 604 Copynumber: 2.6 Consensus size: 604
15340337 TTTTCAAGTT
15340347 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTCAGTAAAT
1 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTCAGTAAAT
*
15340412 TAATATAAGAATATTAT---ATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTA
66 TAATATAAGAATATTATCCAATTAAGAATTTCATTAAATTATATATTTTAATTAAAATATATTTA
15340474 ATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTCAGTAAATTAATATAAG
131 ATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTCAGTAAATTAATATAAG
15340539 AATATTAT---ATTAAGAATTTCATTAAATTATATATTTTAATTAAAATATATTTAATAATAATT
196 AATATTATCCAATTAAGAATTTCATTAAATTATATATTTTAATTAAAATATATTTAATAATAATT
15340601 ATGTTAATTTATATTTTACAGTATCATATATTATGATTTCAGTAAATTAATATAAGAATATT-A-
261 ATGTTAATTTATATTTTACAGTATCATATATTATGATTTCAGTAAATTAATATAAGAATATTAAT
15340664 TATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTAATTT
326 TATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTAATTT
15340729 ATATTTTACAGTATCATATATTATGATTTCAGTAAATTAATATAAGAATATTATCCAATTAAGAA
391 ATATTTTACAGTATCATATATTATGATTTCAGTAAATTAATATAAGAATATTATCCAATTAAGAA
15340794 TTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTAATTTATATTTTAC
456 TTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTAATTTATATTTTAC
15340859 AGTATCATATATTATGATTTCAGTAAATTAATATAAGAATATTATCCAATTAAGAATTTCATTAA
521 AGTATCATATATTATGATTTCAGTAAATTAATATAAGAATATTATCCAATTAAGAATTTCATTAA
15340924 ATTATATATTTTAATTAAA
586 ATTATATATTTTAATTAAA
15340943 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTCAGTAAAT
1 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTCAGTAAAT
15341008 TAATATAAGAATATTATCCAATTAAGAATTTCATTAAATTATATATTTTAATTAAAATATATTTA
66 TAATATAAGAATATTATCCAATTAAGAATTTCATTAAATTATATATTTTAATTAAAATATATTTA
15341073 ATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTCAGTAAATTAATATAAG
131 ATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTCAGTAAATTAATATAAG
15341138 AATATTATCCAATTAAGAATTTCATTAAATTATATATTTTAATTAAAATATATTTAATAATAATT
196 AATATTATCCAATTAAGAATTTCATTAAATTATATATTTTAATTAAAATATATTTAATAATAATT
15341203 ATGTTAATTTATATTTTACAGTATCATATATTATGATTTCAGTAAATTAATATAAGAATATTAAT
261 ATGTTAATTTATATTTTACAGTATCATATATTATGATTTCAGTAAATTAATATAAGAATATTAAT
15341268 TATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTAATTT
326 TATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTAATTT
15341333 ATATTTTACAGTATCATATATTATGATTTCAGTAAATTAATATAAGAATATTATCCAATTAAGAA
391 ATATTTTACAGTATCATATATTATGATTTCAGTAAATTAATATAAGAATATTATCCAATTAAGAA
15341398 TTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTAATTTATATTTTAC
456 TTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTAATTTATATTTTAC
15341463 AGTATCATATATTATGATTTCAGTAAATTAATATAAGAATATTATCCAATTAAGAATTTCATTAA
521 AGTATCATATATTATGATTTCAGTAAATTAATATAAGAATATTATCCAATTAAGAATTTCATTAA
15341528 ATTATATATTTTAATTAAA
586 ATTATATATTTTAATTAAA
15341547 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTCAGTAAAT
1 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTCAGTAAAT
15341612 TAATATAAGAATATTATCCAATTAAGAATTTCATTAAATTATATATTTTAATTAAAATATATTTA
66 TAATATAAGAATATTATCCAATTAAGAATTTCATTAAATTATATATTTTAATTAAAATATATTTA
15341677 ATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTCAGTAAATTAATATAAG
131 ATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTCAGTAAATTAATATAAG
15341742 AATATTATCCAATTAAGAATTTCATTAAATTATATATTTTAATTAAAATATATTTAATAATAATT
196 AATATTATCCAATTAAGAATTTCATTAAATTATATATTTTAATTAAAATATATTTAATAATAATT
15341807 ATGTTAATTTATATTTTACAGTATCATATATTATGATTTCAGTAAATTAATATAAGAATATTAAT
261 ATGTTAATTTATATTTTACAGTATCATATATTATGATTTCAGTAAATTAATATAAGAATATTAAT
15341872 TATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTT
326 TATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTT
15341932 TAAATATGAT
Statistics
Matches: 980, Mismatches: 1, Indels: 8
0.99 0.00 0.01
Matches are distributed among these distances:
596 82 0.08
599 117 0.12
602 116 0.12
603 1 0.00
604 664 0.68
ACGTcount: A:0.44, C:0.04, G:0.05, T:0.47
Consensus pattern (604 bp):
ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTCAGTAAAT
TAATATAAGAATATTATCCAATTAAGAATTTCATTAAATTATATATTTTAATTAAAATATATTTA
ATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTCAGTAAATTAATATAAG
AATATTATCCAATTAAGAATTTCATTAAATTATATATTTTAATTAAAATATATTTAATAATAATT
ATGTTAATTTATATTTTACAGTATCATATATTATGATTTCAGTAAATTAATATAAGAATATTAAT
TATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTAATTT
ATATTTTACAGTATCATATATTATGATTTCAGTAAATTAATATAAGAATATTATCCAATTAAGAA
TTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTAATTTATATTTTAC
AGTATCATATATTATGATTTCAGTAAATTAATATAAGAATATTATCCAATTAAGAATTTCATTAA
ATTATATATTTTAATTAAA
Found at i:15341425 original size:18 final size:17
Alignment explanation
Indices: 15341397--15341431 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
15341387 CCAATTAAGA
*
15341397 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
15341414 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
15341432 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:15341908 original size:18 final size:17
Alignment explanation
Indices: 15341880--15341914 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
15341870 ATTATTAAGA
*
15341880 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
15341897 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
15341915 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:15342128 original size:44 final size:45
Alignment explanation
Indices: 15342079--15342169 Score: 121
Period size: 45 Copynumber: 2.0 Consensus size: 45
15342069 ACCTCTATTC
* * *
15342079 CATTCAACCAAACACAAGATTA-CTATTACGCCTCTATTCCATTA
1 CATTCAACCAAACACAAGATTAGCTATTACACCTCTAATCCAATA
***
15342123 CATTCAACCAAACAGTGGATTAGCTATTACACCTCTAATCCAATA
1 CATTCAACCAAACACAAGATTAGCTATTACACCTCTAATCCAATA
15342168 CA
1 CA
15342170 CCTCTAATCC
Statistics
Matches: 40, Mismatches: 6, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
44 19 0.47
45 21 0.52
ACGTcount: A:0.37, C:0.29, G:0.07, T:0.27
Consensus pattern (45 bp):
CATTCAACCAAACACAAGATTAGCTATTACACCTCTAATCCAATA
Found at i:15342171 original size:16 final size:16
Alignment explanation
Indices: 15342150--15342218 Score: 120
Period size: 16 Copynumber: 4.2 Consensus size: 16
15342140 GATTAGCTAT
15342150 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
15342166 TACACCTCTAATCCCAA
1 TACACCTCTAAT-CCAA
15342183 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
*
15342199 TACGCCTCTAATCCAA
1 TACACCTCTAATCCAA
15342215 TACA
1 TACA
15342219 GCGAACCAAA
Statistics
Matches: 50, Mismatches: 2, Indels: 2
0.93 0.04 0.04
Matches are distributed among these distances:
16 34 0.68
17 16 0.32
ACGTcount: A:0.36, C:0.38, G:0.01, T:0.25
Consensus pattern (16 bp):
TACACCTCTAATCCAA
Done.