Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A06
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 115140250
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2234201 characters in sequence are not A, C, G, or T
File 63 of 345
Found at i:19607121 original size:46 final size:45
Alignment explanation
Indices: 19607071--19607246 Score: 212
Period size: 46 Copynumber: 3.8 Consensus size: 45
19607061 TGGTTGAGCA
19607071 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
*** * *
19607117 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAG-GCA-
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-GCGAAG
*
19607164 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* *
19607210 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
19607247 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 12, Indels: 14
0.81 0.09 0.10
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 1 0.01
46 69 0.62
47 32 0.29
48 1 0.01
49 3 0.03
50 1 0.01
ACGTcount: A:0.21, C:0.21, G:0.30, T:0.28
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAG
Found at i:19607227 original size:93 final size:93
Alignment explanation
Indices: 19607068--19607238 Score: 306
Period size: 93 Copynumber: 1.8 Consensus size: 93
19607058 GGATGGTTGA
* *
19607068 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
19607133 TGAGTCCGAGTTCGAGAGATGTAACTAG
66 TGAGTCCGAGTTCGAGAGATGTAACTAG
* *
19607161 GCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
19607226 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
19607239 ACTTATGGGC
Statistics
Matches: 74, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.27
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGAGAGATGTAACTAG
Found at i:19610228 original size:15 final size:15
Alignment explanation
Indices: 19610190--19610233 Score: 54
Period size: 15 Copynumber: 2.9 Consensus size: 15
19610180 CATAGTATCG
* *
19610190 TATCTTGGGTTTCTT
1 TATCTTGGATTTCTC
19610205 TAT-TCTGGATTTCTC
1 TATCT-TGGATTTCTC
19610220 TATCTTGGATTTCT
1 TATCTTGGATTTCT
19610234 TTATTCGGTT
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
14 1 0.04
15 23 0.92
16 1 0.04
ACGTcount: A:0.11, C:0.16, G:0.16, T:0.57
Consensus pattern (15 bp):
TATCTTGGATTTCTC
Found at i:19612693 original size:46 final size:45
Alignment explanation
Indices: 19612640--19612812 Score: 179
Period size: 46 Copynumber: 3.8 Consensus size: 45
19612630 TTGAGCATCC
19612640 GAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCT
1 GAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAT-TCT
* *** * *
19612686 GAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAG-GCA-TCT
1 GAGCTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-GCGAATTCT
* * * * *
19612733 GAGCTTGTTGAGTTGATTCTGAGTTCACTTATGGATGCGAACTCCC
1 GAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-TTCT
19612779 GAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 GAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
19612813 GCGGGTTACA
Statistics
Matches: 100, Mismatches: 20, Indels: 14
0.75 0.15 0.10
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 1 0.01
46 61 0.61
47 29 0.29
48 1 0.01
49 3 0.03
50 1 0.01
ACGTcount: A:0.21, C:0.18, G:0.29, T:0.32
Consensus pattern (45 bp):
GAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATTCT
Found at i:19612793 original size:93 final size:93
Alignment explanation
Indices: 19612634--19612804 Score: 263
Period size: 93 Copynumber: 1.8 Consensus size: 93
19612624 GGATGGTTGA
* *
19612634 GCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCTGAACTCGTTGAGT
1 GCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCCCGAACTCGTTGAGT
19612699 TGAGTCCGAGTTCGAGAGATGTAACTAG
66 TGAGTCCGAGTTCGAGAGATGTAACTAG
* * * * *
19612727 GCATCTGAGCTTGTTGAGTTGATTCTGAGTTCACTTATGGATGCGAACT-CCCGAGCTCGTTGAG
1 GCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-TGCCCGAACTCGTTGAG
19612791 TTGAGTCCGAGTTC
65 TTGAGTCCGAGTTC
19612805 ACTTATGGGC
Statistics
Matches: 70, Mismatches: 7, Indels: 2
0.89 0.09 0.03
Matches are distributed among these distances:
93 69 0.99
94 1 0.01
ACGTcount: A:0.20, C:0.19, G:0.29, T:0.31
Consensus pattern (93 bp):
GCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGAGAGATGTAACTAG
Found at i:19618002 original size:13 final size:13
Alignment explanation
Indices: 19617983--19618013 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
19617973 GGGTTTGTTT
19617983 ACTAAACTAATTA
1 ACTAAACTAATTA
*
19617996 TCTAAACTAATTA
1 ACTAAACTAATTA
19618009 ACTAA
1 ACTAA
19618014 TTTAATCAAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.52, C:0.16, G:0.00, T:0.32
Consensus pattern (13 bp):
ACTAAACTAATTA
Found at i:19626330 original size:13 final size:13
Alignment explanation
Indices: 19626311--19626341 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
19626301 GGGTTTGTTT
19626311 ACTAAACTAATTA
1 ACTAAACTAATTA
*
19626324 TCTAAACTAATTA
1 ACTAAACTAATTA
19626337 ACTAA
1 ACTAA
19626342 TTTAATCAAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.52, C:0.16, G:0.00, T:0.32
Consensus pattern (13 bp):
ACTAAACTAATTA
Found at i:19631970 original size:37 final size:37
Alignment explanation
Indices: 19631920--19631998 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
19631910 TTATTACGAA
* * *
19631920 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
*
19631957 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
19631994 GTCTT
1 GTCTT
19631999 TAGAGCTCAG
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:19632195 original size:47 final size:47
Alignment explanation
Indices: 19632117--19632480 Score: 595
Period size: 47 Copynumber: 7.7 Consensus size: 47
19632107 CCCTTCGGGA
* * * * * *
19632117 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
19632164 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
19632211 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
19632258 CTTATCACATATATACACTTTCACATTGATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
19632305 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
19632352 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
19632399 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * * *
19632446 CTTATCTCGTATATGCA-TGTTCACATCCATCACAT
1 CTTATCACATATATACACT-TTCACATTCATCACAT
19632481 AGAATCCTAA
Statistics
Matches: 300, Mismatches: 16, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
46 1 0.00
47 299 1.00
ACGTcount: A:0.28, C:0.30, G:0.09, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:19636069 original size:50 final size:50
Alignment explanation
Indices: 19635940--19636372 Score: 336
Period size: 50 Copynumber: 8.6 Consensus size: 50
19635930 ATTGTGAGAA
* * * * *** *
19635940 CACATGTGTTGTACTATGTGCAAGCTACTATGTGTTTAAGATGGTTTTAGGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAG--TTAGGT
* * * *
19635992 CACGTGTATAGTACAAAGTGCACGCTACTACGTGTACCAGATAGTTAGGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAGTTAGGT
** * * * * * * *
19636042 CGTATGTGTAGTACTACGTCCAGGCTACTATGTGTACCCGACAACTTCA-AT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGA-TAGTT-AGGT
* * * * * * * * *
19636093 CACGTATGTAGTACTAAGTGCAAGATACTATGTTTATCAAATGGTTAGGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAGTTAGGT
* *
19636143 CACGTGTGTAGCACTAAGTGCAGGCTACTACGTGTACCAGATAGTTAGGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAGTTAGGT
* * * * *
19636193 CACATGTGTAGTACCAAGTGCAGGCTACTATGCGTACCCGAGA-ACTTCA-AT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTA-CC-AGATAGTT-AGGT
* * *
19636244 CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAGGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAGTTAGGT
* * * *
19636294 CACGTGTGTAGTACTAAGTACATGCTACTACGTGTACC-GAATTGTT-GGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAG-ATAGTTAGGT
** *
19636343 TGCATGTGTAGTACTAAGTGTAGGCTACTA
1 CACATGTGTAGTACTAAGTGCAGGCTACTA
19636373 TGCGTGCCAA
Statistics
Matches: 298, Mismatches: 74, Indels: 21
0.76 0.19 0.05
Matches are distributed among these distances:
49 33 0.11
50 156 0.52
51 71 0.24
52 38 0.13
ACGTcount: A:0.27, C:0.18, G:0.24, T:0.30
Consensus pattern (50 bp):
CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAGTTAGGT
Found at i:19636122 original size:101 final size:101
Alignment explanation
Indices: 19635991--19636180 Score: 227
Period size: 101 Copynumber: 1.9 Consensus size: 101
19635981 TGGTTTTAGG
* * * * ** *
19635991 TCACGTGTATAGTACAAAGTGCACGCTACTACGTGTACCAGATAGTTAGGTCGTATGTGTAGTAC
1 TCACGTATATAGTACAAAGTGCAAGATACTACGTGTACCAAATAGTTAGGTCACATGTGTAGCAC
* *
19636056 TACGTCCAGGCTACTATGTGTACCCGACAACTTCAA
66 TAAGTCCAGGCTACTACGTGTACCCGACAACTTCAA
* * * * * * *
19636092 TCACGTATGTAGTACTAAGTGCAAGATACTATGTTTATCAAATGGTTAGGTCACGTGTGTAGCAC
1 TCACGTATATAGTACAAAGTGCAAGATACTACGTGTACCAAATAGTTAGGTCACATGTGTAGCAC
*
19636157 TAAGTGCAGGCTACTACGTGTACC
66 TAAGTCCAGGCTACTACGTGTACC
19636181 AGATAGTTAG
Statistics
Matches: 72, Mismatches: 17, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
101 72 1.00
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.29
Consensus pattern (101 bp):
TCACGTATATAGTACAAAGTGCAAGATACTACGTGTACCAAATAGTTAGGTCACATGTGTAGCAC
TAAGTCCAGGCTACTACGTGTACCCGACAACTTCAA
Found at i:19636230 original size:151 final size:151
Alignment explanation
Indices: 19635950--19636377 Score: 576
Period size: 151 Copynumber: 2.8 Consensus size: 151
19635940 CACATGTGTT
* * *
19635950 GTACTATGTGCAAGCTACTATGTGTT-T-AAGATGGTTTTAGGTCACGTGTATAGTACAAAGTGC
1 GTACTAAGTGCAAGCTACTATGT-TTATCAA-ATGG--TTAGGTCACGTGTGTAGTACTAAGTGC
* * * *
19636013 ACGCTACTACGTGTACCAGATAGTTAGGTCGTATGTGTAGTACTACGTCCAGGCTACTATGTGTA
62 ACGCTACTACGTGTACCAGATAGTTAGGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTA
19636078 CCCGACAACTTCAATCACGTATGTA
127 CCCGACAACTTCAATCACGTATGTA
* * *
19636103 GTACTAAGTGCAAGATACTATGTTTATCAAATGGTTAGGTCACGTGTGTAGCACTAAGTGCAGGC
1 GTACTAAGTGCAAGCTACTATGTTTATCAAATGGTTAGGTCACGTGTGTAGTACTAAGTGCACGC
* *
19636168 TACTACGTGTACCAGATAGTTAGGTCACATGTGTAGTACCAAGTGCAGGCTACTATGCGTACCCG
66 TACTACGTGTACCAGATAGTTAGGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCG
* *
19636233 AGAACTTCAATCACGTGTGTA
131 ACAACTTCAATCACGTATGTA
* * * * * *
19636254 GTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAGGTCACGTGTGTAGTACTAAGTACATGC
1 GTACTAAGTGCAAGCTACTATGTTTATCAAATGGTTAGGTCACGTGTGTAGTACTAAGTGCACGC
* * *
19636319 TACTACGTGTACC-GAATTGTT-GGTTGCATGTGTAGTACTAAGTGTAGGCTACTATGCGT
66 TACTACGTGTACCAG-ATAGTTAGGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGT
19636378 GCCAAATAGC
Statistics
Matches: 245, Mismatches: 27, Indels: 9
0.87 0.10 0.03
Matches are distributed among these distances:
150 35 0.14
151 180 0.73
152 2 0.01
153 26 0.11
154 2 0.01
ACGTcount: A:0.27, C:0.18, G:0.25, T:0.30
Consensus pattern (151 bp):
GTACTAAGTGCAAGCTACTATGTTTATCAAATGGTTAGGTCACGTGTGTAGTACTAAGTGCACGC
TACTACGTGTACCAGATAGTTAGGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCG
ACAACTTCAATCACGTATGTA
Found at i:19636247 original size:101 final size:101
Alignment explanation
Indices: 19636142--19636323 Score: 301
Period size: 101 Copynumber: 1.8 Consensus size: 101
19636132 AATGGTTAGG
19636142 TCACGTGTGTAGCACTAAGTGCAGGCTACTACGTGTACCAGATAGTTAGGTCACATGTGTAGTAC
1 TCACGTGTGTAGCACTAAGTGCAGGCTACTACGTGTACCAGATAGTTAGGTCACATGTGTAGTAC
*
19636207 CAAGTGCAGGCTACTATGCGTACCCGAGAACTTCAA
66 CAAGTACAGGCTACTATGCGTACCCGAGAACTTCAA
* * * *
19636243 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAGGTCACGTGTGTAGTAC
1 TCACGTGTGTAGCACTAAGTGCAGGCTACTACGTGTACCAGATAGTTAGGTCACATGTGTAGTAC
* *
19636308 TAAGTACATGCTACTA
66 CAAGTACAGGCTACTA
19636324 CGTGTACCGA
Statistics
Matches: 74, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
101 74 1.00
ACGTcount: A:0.27, C:0.20, G:0.25, T:0.27
Consensus pattern (101 bp):
TCACGTGTGTAGCACTAAGTGCAGGCTACTACGTGTACCAGATAGTTAGGTCACATGTGTAGTAC
CAAGTACAGGCTACTATGCGTACCCGAGAACTTCAA
Found at i:19636614 original size:15 final size:16
Alignment explanation
Indices: 19636584--19636615 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
19636574 GAATGGAGTA
19636584 AGTGAAATTATGTAAT
1 AGTGAAATTATGTAAT
19636600 AGTGAAATT-TGTAAT
1 AGTGAAATTATGTAAT
19636615 A
1 A
19636616 ATATAGTTTT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 7 0.44
16 9 0.56
ACGTcount: A:0.44, C:0.00, G:0.19, T:0.38
Consensus pattern (16 bp):
AGTGAAATTATGTAAT
Found at i:19638746 original size:20 final size:20
Alignment explanation
Indices: 19638721--19638794 Score: 58
Period size: 20 Copynumber: 3.4 Consensus size: 20
19638711 GGATGCGAAT
19638721 GTCCGAGCTCGTTGAGTTGA
1 GTCCGAGCTCGTTGAGTTGA
* *
19638741 GTCCGAGTTCGTGAGATGTAACTAGGA
1 GTCCGAGCTCGT-TGA-GT---T--GA
*
19638768 ATCCGAGCTCGTTGAGTTGA
1 GTCCGAGCTCGTTGAGTTGA
19638788 GTCCGAG
1 GTCCGAG
19638795 TTCACTTATG
Statistics
Matches: 41, Mismatches: 6, Indels: 14
0.67 0.10 0.23
Matches are distributed among these distances:
20 19 0.46
21 2 0.05
22 3 0.07
25 3 0.07
26 2 0.05
27 12 0.29
ACGTcount: A:0.20, C:0.19, G:0.34, T:0.27
Consensus pattern (20 bp):
GTCCGAGCTCGTTGAGTTGA
Found at i:19642581 original size:43 final size:43
Alignment explanation
Indices: 19642515--19642672 Score: 133
Period size: 43 Copynumber: 3.7 Consensus size: 43
19642505 AGCTCGTGCA
* *
19642515 ATGCCAACGTCCCAAACATGGTCTTACATGTAATCAAAAATCG
1 ATGCCAACGTCCCAAACAGGGTCTTACACGTAATCAAAAATCG
* ** * * *
19642558 ATGCC-ACTGTCCCAGACAGGGTCTTACACAAAATCATATA-CA
1 ATGCCAAC-GTCCCAAACAGGGTCTTACACGTAATCAAAAATCG
* * **
19642600 ATGCCAATGTCCCAAAACATGGTCTTACACGTAAATCACGAATCG
1 ATGCCAACGTCCC-AAACAGGGTCTTACACGT-AATCAAAAATCG
* *
19642645 ATGCCAACGACCCAGAC-GTGGTCTTACA
1 ATGCCAACGTCCCAAACAG-GGTCTTACA
19642673 AAATAACACA
Statistics
Matches: 88, Mismatches: 21, Indels: 11
0.73 0.17 0.09
Matches are distributed among these distances:
42 13 0.15
43 45 0.51
44 18 0.20
45 12 0.14
ACGTcount: A:0.35, C:0.28, G:0.16, T:0.22
Consensus pattern (43 bp):
ATGCCAACGTCCCAAACAGGGTCTTACACGTAATCAAAAATCG
Found at i:19642659 original size:87 final size:85
Alignment explanation
Indices: 19642513--19642672 Score: 225
Period size: 87 Copynumber: 1.9 Consensus size: 85
19642503 TAAGCTCGTG
* *
19642513 CAATGCCAACGTCCCAAACATGGTCTTACATGTAATCAAAAATCGATGCCACTGTCCCAGACAG-
1 CAATGCCAACGTCCCAAACATGGTCTTACACGTAATCAAAAATCGATGCCACTGACCCAGAC-GT
19642577 GGTCTTACACAAAATCATATA
65 GGTCTTACACAAAATCATATA
* **
19642598 CAATGCCAATGTCCCAAAACATGGTCTTACACGTAAATCACGAATCGATGCCAAC-GACCCAGAC
1 CAATGCCAACGTCCC-AAACATGGTCTTACACGT-AATCAAAAATCGATGCC-ACTGACCCAGAC
19642662 GTGGTCTTACA
63 GTGGTCTTACA
19642673 AAATAACACA
Statistics
Matches: 66, Mismatches: 5, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
85 14 0.21
86 18 0.27
87 32 0.48
88 2 0.03
ACGTcount: A:0.35, C:0.28, G:0.16, T:0.21
Consensus pattern (85 bp):
CAATGCCAACGTCCCAAACATGGTCTTACACGTAATCAAAAATCGATGCCACTGACCCAGACGTG
GTCTTACACAAAATCATATA
Found at i:19643679 original size:26 final size:26
Alignment explanation
Indices: 19643637--19643689 Score: 65
Period size: 26 Copynumber: 2.0 Consensus size: 26
19643627 TTATTTTTAT
19643637 TATCATTAATAACATAAT-TACTAAAC
1 TATCATTAATAACATAATATA-TAAAC
*
19643663 TATCCTTAATGAA-ATAATATATAAAC
1 TATCATTAAT-AACATAATATATAAAC
19643689 T
1 T
19643690 TAATAATGGT
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
26 20 0.83
27 4 0.17
ACGTcount: A:0.49, C:0.13, G:0.02, T:0.36
Consensus pattern (26 bp):
TATCATTAATAACATAATATATAAAC
Found at i:19649338 original size:42 final size:42
Alignment explanation
Indices: 19649226--19649387 Score: 155
Period size: 43 Copynumber: 3.8 Consensus size: 42
19649216 CATAAGCTCG
* * * *
19649226 TACAATGCCAATGTCCCGGACGTGGTCTTACATGTAATCAAA
1 TACAATGCCAATGTCCCAGACATGGTCTTACACGAAATCAAA
* * * * *
19649268 TATCGATGCCACTGTTCCAGACAGGGTCTTACACGAAATCATA
1 TA-CAATGCCAATGTCCCAGACATGGTCTTACACGAAATCAAA
*
19649311 TACAATGCCAATGTCCCAAACATGGTCTTACACGTAAATCACGAA
1 TACAATGCCAATGTCCCAGACATGGTCTTACACG-AAATCA--AA
* ** *
19649356 T-CGATGCCAACATCCCAGACGTGGTCTTACAC
1 TACAATGCCAATGTCCCAGACATGGTCTTACAC
19649388 AATAAAACAT
Statistics
Matches: 96, Mismatches: 20, Indels: 6
0.79 0.16 0.05
Matches are distributed among these distances:
42 29 0.30
43 39 0.41
44 26 0.27
45 2 0.02
ACGTcount: A:0.31, C:0.27, G:0.17, T:0.24
Consensus pattern (42 bp):
TACAATGCCAATGTCCCAGACATGGTCTTACACGAAATCAAA
Found at i:19649383 original size:86 final size:85
Alignment explanation
Indices: 19649226--19649387 Score: 204
Period size: 85 Copynumber: 1.9 Consensus size: 85
19649216 CATAAGCTCG
** * * * *
19649226 TACAATGCCAATGTCCCGGACGTGGTCTTACATGTAATCAAATATCGATGCCACTGTTCCAGACA
1 TACAATGCCAATGTCCCAAACATGGTCTTACACGTAATCAAATATCGATGCCACTATCCCAGACA
19649291 GGGTCTTACACGAAATCATA
66 GGGTCTTACACGAAATCATA
*
19649311 TACAATGCCAATGTCCCAAACATGGTCTTACACGTAAATCACGA-ATCGATGCCAAC-ATCCCAG
1 TACAATGCCAATGTCCCAAACATGGTCTTACACGT-AATCA-AATATCGATGCC-ACTATCCCAG
19649374 AC-GTGGTCTTACAC
63 ACAG-GGTCTTACAC
19649388 AATAAAACAT
Statistics
Matches: 66, Mismatches: 7, Indels: 7
0.82 0.09 0.09
Matches are distributed among these distances:
85 32 0.48
86 31 0.47
87 3 0.05
ACGTcount: A:0.31, C:0.27, G:0.17, T:0.24
Consensus pattern (85 bp):
TACAATGCCAATGTCCCAAACATGGTCTTACACGTAATCAAATATCGATGCCACTATCCCAGACA
GGGTCTTACACGAAATCATA
Found at i:19650358 original size:26 final size:26
Alignment explanation
Indices: 19650316--19650368 Score: 65
Period size: 26 Copynumber: 2.0 Consensus size: 26
19650306 TTATTTTTAT
19650316 TATCATTAATAACATAAT-TAGTAAAC
1 TATCATTAATAACATAATATA-TAAAC
*
19650342 TATCCTTAATGAA-ATAATATATAAAC
1 TATCATTAAT-AACATAATATATAAAC
19650368 T
1 T
19650369 TAATAATGGT
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
26 20 0.83
27 4 0.17
ACGTcount: A:0.49, C:0.11, G:0.04, T:0.36
Consensus pattern (26 bp):
TATCATTAATAACATAATATATAAAC
Found at i:19655004 original size:20 final size:20
Alignment explanation
Indices: 19654979--19655016 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
19654969 ACTAGGCTCA
*
19654979 TTCAACTAGTAGTTGGGTGG
1 TTCAACTAGTAATTGGGTGG
19654999 TTCAACTAGTAATTGGGT
1 TTCAACTAGTAATTGGGT
19655017 CTTAGTCTCA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.24, C:0.11, G:0.29, T:0.37
Consensus pattern (20 bp):
TTCAACTAGTAATTGGGTGG
Found at i:19655075 original size:13 final size:13
Alignment explanation
Indices: 19655057--19655081 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
19655047 ATTTACAATC
19655057 TCAAGTTCAATTT
1 TCAAGTTCAATTT
19655070 TCAAGTTCAATT
1 TCAAGTTCAATT
19655082 AGCCATTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.08, T:0.44
Consensus pattern (13 bp):
TCAAGTTCAATTT
Found at i:19655710 original size:20 final size:21
Alignment explanation
Indices: 19655676--19655714 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 21
19655666 TTATAATATC
*
19655676 ATAAACAATATGAATAAAAAA
1 ATAAACAATAGGAATAAAAAA
19655697 ATAAA-AATAGGAATAAAA
1 ATAAACAATAGGAATAAAA
19655715 GAAGAAATTA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 12 0.71
21 5 0.29
ACGTcount: A:0.72, C:0.03, G:0.08, T:0.18
Consensus pattern (21 bp):
ATAAACAATAGGAATAAAAAA
Found at i:19657014 original size:24 final size:24
Alignment explanation
Indices: 19656982--19657051 Score: 95
Period size: 24 Copynumber: 2.9 Consensus size: 24
19656972 GGATAAGAAA
* *
19656982 ATACAGCACTATGTGTGCAAGGCT
1 ATACGGCACTATGTGTGCAAGACT
*
19657006 ATACGGCACTATGTGTGCAAGATT
1 ATACGGCACTATGTGTGCAAGACT
* *
19657030 ACATGGCACTATGTGTGCAAGA
1 ATACGGCACTATGTGTGCAAGA
19657052 AAACGTAGCA
Statistics
Matches: 41, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 41 1.00
ACGTcount: A:0.30, C:0.19, G:0.26, T:0.26
Consensus pattern (24 bp):
ATACGGCACTATGTGTGCAAGACT
Found at i:19657062 original size:24 final size:24
Alignment explanation
Indices: 19656986--19657097 Score: 88
Period size: 24 Copynumber: 4.6 Consensus size: 24
19656976 AAGAAAATAC
*
19656986 AGCACTATGTGTGCAAGGCTATACG-
1 AGCACTATGTGTGCAA-G-AATACGT
* *
19657011 -GCACTATGTGTGCAAGATTACAT
1 AGCACTATGTGTGCAAGAATACGT
* *
19657034 GGCACTATGTGTGCAAGAAAACGT
1 AGCACTATGTGTGCAAGAATACGT
* *
19657058 AGCACTAAGTGTGC--GAATAAGT
1 AGCACTATGTGTGCAAGAATACGT
19657080 AAGACCACTATGTGTGCA
1 -AG--CACTATGTGTGCA
19657098 GACTTTCAAA
Statistics
Matches: 70, Mismatches: 11, Indels: 11
0.76 0.12 0.12
Matches are distributed among these distances:
22 9 0.13
23 3 0.04
24 47 0.67
25 11 0.16
ACGTcount: A:0.32, C:0.18, G:0.26, T:0.24
Consensus pattern (24 bp):
AGCACTATGTGTGCAAGAATACGT
Found at i:19663499 original size:20 final size:21
Alignment explanation
Indices: 19663465--19663503 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 21
19663455 TTATAATATC
*
19663465 ATAAACAATATGAATAAAAAA
1 ATAAACAATAGGAATAAAAAA
19663486 ATAAA-AATAGGAATAAAA
1 ATAAACAATAGGAATAAAA
19663504 GAAGAAATTA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 12 0.71
21 5 0.29
ACGTcount: A:0.72, C:0.03, G:0.08, T:0.18
Consensus pattern (21 bp):
ATAAACAATAGGAATAAAAAA
Found at i:19671560 original size:119 final size:119
Alignment explanation
Indices: 19671322--19671787 Score: 880
Period size: 119 Copynumber: 3.9 Consensus size: 119
19671312 ACTAGCATCA
*
19671322 ACAGTATCATATATTATGATTTGAGTAAATTAATATAAGAACATTAATTATTAAGAATTTTTTTA
1 ACAGTATCATATATTATGATTTGAGTAAATTAATATAAGAATATTAATTATTAAGAA-TTTTTTA
19671387 AATTATATAGTTTAATTAAAATATATTTAATAATAATTATGTTAATTTATATTTT
65 AATTATATAGTTTAATTAAAATATATTTAATAATAATTATGTTAATTTATATTTT
19671442 ACAGTATCATATATTATGATTTGAGTAAATTAATATAAGAATATTAATTATTAAGAATTTTTTAA
1 ACAGTATCATATATTATGATTTGAGTAAATTAATATAAGAATATTAATTATTAAGAATTTTTTAA
19671507 ATTATATAGTTTAATTAAAATATATTTAATAATAATTATGTTAATTTATATTTT
66 ATTATATAGTTTAATTAAAATATATTTAATAATAATTATGTTAATTTATATTTT
19671561 ACAGTATCATATATTATGATTTGAGTAAATTAATATAAGAATATTAATTATTAAGAATTTTTTAA
1 ACAGTATCATATATTATGATTTGAGTAAATTAATATAAGAATATTAATTATTAAGAATTTTTTAA
19671626 ATTATATAGTTTAATTAAAATATATTTAATAATAATTATGTTAATTTATATTTT
66 ATTATATAGTTTAATTAAAATATATTTAATAATAATTATGTTAATTTATATTTT
*
19671680 ACAGTATCATATATTATGATTTCAGTAAATTAATATAAGAATATTAATTATTAAGAATTTTATTA
1 ACAGTATCATATATTATGATTTGAGTAAATTAATATAAGAATATTAATTATTAAGAATTTT-TTA
19671745 AATTATATA-TTGTAATTAAAATATATTTAATAATAATTATGTT
65 AATTATATAGTT-TAATTAAAATATATTTAATAATAATTATGTT
19671788 TAAATATGAT
Statistics
Matches: 342, Mismatches: 2, Indels: 4
0.98 0.01 0.01
Matches are distributed among these distances:
119 243 0.71
120 99 0.29
ACGTcount: A:0.44, C:0.02, G:0.07, T:0.47
Consensus pattern (119 bp):
ACAGTATCATATATTATGATTTGAGTAAATTAATATAAGAATATTAATTATTAAGAATTTTTTAA
ATTATATAGTTTAATTAAAATATATTTAATAATAATTATGTTAATTTATATTTT
Found at i:19671984 original size:44 final size:45
Alignment explanation
Indices: 19671935--19672025 Score: 121
Period size: 45 Copynumber: 2.0 Consensus size: 45
19671925 ACCTCTATTC
* * *
19671935 CATTCAACCAAACACAAGATTA-CTATTACGCCTCTATTCCATTA
1 CATTCAACCAAACACAAGATTAGCTATTACACCTCTAATCCAATA
***
19671979 CATTCAACCAAACAGTGGATTAGCTATTACACCTCTAATCCAATA
1 CATTCAACCAAACACAAGATTAGCTATTACACCTCTAATCCAATA
19672024 CA
1 CA
19672026 CCTCTAATCC
Statistics
Matches: 40, Mismatches: 6, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
44 19 0.47
45 21 0.52
ACGTcount: A:0.37, C:0.29, G:0.07, T:0.27
Consensus pattern (45 bp):
CATTCAACCAAACACAAGATTAGCTATTACACCTCTAATCCAATA
Found at i:19672027 original size:16 final size:16
Alignment explanation
Indices: 19672006--19672074 Score: 120
Period size: 16 Copynumber: 4.2 Consensus size: 16
19671996 GATTAGCTAT
19672006 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
19672022 TACACCTCTAATCCCAA
1 TACACCTCTAAT-CCAA
19672039 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
*
19672055 TACGCCTCTAATCCAA
1 TACACCTCTAATCCAA
19672071 TACA
1 TACA
19672075 GCGAACCAAA
Statistics
Matches: 50, Mismatches: 2, Indels: 2
0.93 0.04 0.04
Matches are distributed among these distances:
16 34 0.68
17 16 0.32
ACGTcount: A:0.36, C:0.38, G:0.01, T:0.25
Consensus pattern (16 bp):
TACACCTCTAATCCAA
Found at i:19672048 original size:33 final size:32
Alignment explanation
Indices: 19672006--19672074 Score: 120
Period size: 33 Copynumber: 2.1 Consensus size: 32
19671996 GATTAGCTAT
19672006 TACACCTCTAATCCAATACACCTCTAATCCCAA
1 TACACCTCTAATCCAATACACCTCTAAT-CCAA
*
19672039 TACACCTCTAATCCAATACGCCTCTAATCCAA
1 TACACCTCTAATCCAATACACCTCTAATCCAA
19672071 TACA
1 TACA
19672075 GCGAACCAAA
Statistics
Matches: 35, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
32 8 0.23
33 27 0.77
ACGTcount: A:0.36, C:0.38, G:0.01, T:0.25
Consensus pattern (32 bp):
TACACCTCTAATCCAATACACCTCTAATCCAA
Found at i:19675472 original size:45 final size:45
Alignment explanation
Indices: 19675342--19675556 Score: 280
Period size: 45 Copynumber: 4.9 Consensus size: 45
19675332 TTTTATCAAA
* * * **
19675342 TCACCGGCATT-CAGCCTGCTAGGTTTAAAAACCCGAAT--TCAT-
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAAT-ATC
* * *
19675384 TCACTGGCATT-TCGCCTGCTAGGCTC-GAGGCCCGAATAATATC
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAATATC
* *
19675427 TCACTGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATATTATC
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAATATC
*
19675472 TCACCGGCATTATAGTCTGCTAGGCTCAAAGGCCCGAATAATATC
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAATATC
19675517 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATA
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATA
19675557 GTACTGCACA
Statistics
Matches: 153, Mismatches: 15, Indels: 7
0.87 0.09 0.04
Matches are distributed among these distances:
41 8 0.05
42 23 0.15
43 12 0.08
44 14 0.09
45 96 0.63
ACGTcount: A:0.27, C:0.28, G:0.20, T:0.25
Consensus pattern (45 bp):
TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAATATC
Found at i:19681590 original size:46 final size:46
Alignment explanation
Indices: 19681523--19681882 Score: 486
Period size: 46 Copynumber: 7.8 Consensus size: 46
19681513 AGTGTGCTCT
* *
19681523 CTGATATGGAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAAC
* *
19681569 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAGC
1 CTGATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAAC
*
19681615 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAAC
* *
19681661 GTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAAC
* * * *
19681707 ATGATATGAAATGAATAAGACCATGGTAGAAAGATATCATGGCAAC
1 CTGATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAAC
*
19681753 CTGATATGAAATGAGTAAGACCGTGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAAC
* *** * * *
19681799 ATGACGGGAAAATGAATAAGACAATGGTTGAAAGGTACCATGGCAAC
1 CTGATATG-AAATGAGTAAGACCATGGTTGAAAGATACCATGGCAAC
* * ** * *
19681846 ATGACAAAAAATGAGTAAAACCATAGTTGAAAGATAC
1 CTGATATGAAATGAGTAAGACCATGGTTGAAAGATAC
19681883 TATGACATCA
Statistics
Matches: 283, Mismatches: 30, Indels: 2
0.90 0.10 0.01
Matches are distributed among these distances:
46 244 0.86
47 39 0.14
ACGTcount: A:0.40, C:0.14, G:0.24, T:0.22
Consensus pattern (46 bp):
CTGATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAAC
Found at i:19684922 original size:25 final size:25
Alignment explanation
Indices: 19684893--19684942 Score: 91
Period size: 25 Copynumber: 2.0 Consensus size: 25
19684883 TTGCTCATAA
*
19684893 CTCGAGCCTCTCTCTTAGCTTGTTT
1 CTCGAGCATCTCTCTTAGCTTGTTT
19684918 CTCGAGCATCTCTCTTAGCTTGTTT
1 CTCGAGCATCTCTCTTAGCTTGTTT
19684943 TCTTTCATTA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.10, C:0.30, G:0.16, T:0.44
Consensus pattern (25 bp):
CTCGAGCATCTCTCTTAGCTTGTTT
Found at i:19692162 original size:44 final size:43
Alignment explanation
Indices: 19692017--19692183 Score: 142
Period size: 44 Copynumber: 3.9 Consensus size: 43
19692007 GAACATATAT
* * * * **
19692017 AATGCCAACGTCCCAGACGTGGTCTTTCATGT-AGTCAAACATC
1 AATGCCAATGTCCCAGACATGGTCTTACACGTAAAACAAA-ATC
* * * * * *
19692060 GATGCCACTGTCCCAGACAGGGTCTTACATG-AAATC-AGATAC
1 AATGCCAATGTCCCAGACATGGTCTTACACGTAAAACAAAAT-C
*
19692102 AATGCCGATGTCCCAGACATGGTCTTACACGTAAAACAAAAGTC
1 AATGCCAATGTCCCAGACATGGTCTTACACGTAAAACAAAA-TC
** *
19692146 AATGCCAATGTCCCAGATGTGGTCTTACACGCAAAACA
1 AATGCCAATGTCCCAGACATGGTCTTACACGTAAAACA
19692184 GGTATTGAAA
Statistics
Matches: 100, Mismatches: 19, Indels: 9
0.78 0.15 0.07
Matches are distributed among these distances:
41 2 0.02
42 28 0.28
43 32 0.32
44 37 0.37
45 1 0.01
ACGTcount: A:0.32, C:0.26, G:0.19, T:0.22
Consensus pattern (43 bp):
AATGCCAATGTCCCAGACATGGTCTTACACGTAAAACAAAATC
Found at i:19695071 original size:73 final size:73
Alignment explanation
Indices: 19694959--19695104 Score: 283
Period size: 73 Copynumber: 2.0 Consensus size: 73
19694949 CAGTTTATTA
*
19694959 AACAAAGGAAATGAAATAACTAATAGAAATTTAAAACAACAAAATTAAATTTAAAAAAATCAATA
1 AACAAAGGAAATGAAATAACTAATAGAAATTTAAAACAACAAAATTAAATTAAAAAAAATCAATA
19695024 CATTAAAG
66 CATTAAAG
19695032 AACAAAGGAAATGAAATAACTAATAGAAATTTAAAACAACAAAATTAAATTAAAAAAAATCAATA
1 AACAAAGGAAATGAAATAACTAATAGAAATTTAAAACAACAAAATTAAATTAAAAAAAATCAATA
19695097 CATTAAAG
66 CATTAAAG
19695105 CTAAACATCT
Statistics
Matches: 72, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
73 72 1.00
ACGTcount: A:0.64, C:0.08, G:0.07, T:0.21
Consensus pattern (73 bp):
AACAAAGGAAATGAAATAACTAATAGAAATTTAAAACAACAAAATTAAATTAAAAAAAATCAATA
CATTAAAG
Found at i:19702218 original size:13 final size:13
Alignment explanation
Indices: 19702200--19702233 Score: 68
Period size: 13 Copynumber: 2.6 Consensus size: 13
19702190 TAAACAGAAG
19702200 GTGAAAGTGATCC
1 GTGAAAGTGATCC
19702213 GTGAAAGTGATCC
1 GTGAAAGTGATCC
19702226 GTGAAAGT
1 GTGAAAGT
19702234 TTAAAAGTAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 21 1.00
ACGTcount: A:0.32, C:0.12, G:0.32, T:0.24
Consensus pattern (13 bp):
GTGAAAGTGATCC
Found at i:19710265 original size:40 final size:39
Alignment explanation
Indices: 19710221--19710392 Score: 218
Period size: 40 Copynumber: 4.3 Consensus size: 39
19710211 TACCATTTCA
* * * * *
19710221 CACACTTAATGCTATTTATAGACAAAGATGTTTTGAATTG
1 CACACTTAGTGCTACTTATAGCCAAA-ATATTTTGAATCG
* *
19710261 CACACTTAGTGCTATTTATAGCCAAATCTATTTTGAATCG
1 CACACTTAGTGCTACTTATAGCCAAA-ATATTTTGAATCG
*
19710301 CACACTTAGTGCTACTTATAGCAAAAATTATTTTGAATCG
1 CACACTTAGTGCTACTTATAGCCAAAA-TATTTTGAATCG
* *
19710341 CACACTTAGTGTTACTTATAGCCGAAATTATTTTGAATCG
1 CACACTTAGTGCTACTTATAGCC-AAAATATTTTGAATCG
19710381 CACACTTAGTGC
1 CACACTTAGTGC
19710393 CAAATGCAGT
Statistics
Matches: 117, Mismatches: 13, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
40 114 0.97
41 3 0.03
ACGTcount: A:0.32, C:0.18, G:0.14, T:0.36
Consensus pattern (39 bp):
CACACTTAGTGCTACTTATAGCCAAAATATTTTGAATCG
Found at i:19710389 original size:80 final size:80
Alignment explanation
Indices: 19710221--19710392 Score: 249
Period size: 80 Copynumber: 2.1 Consensus size: 80
19710211 TACCATTTCA
* * * * * *
19710221 CACACTTAATGCTATTTATAGACAAAGATGTTTTGAATTGCACACTTAGTGCTATTTATAGCCAA
1 CACACTTAGTGCTACTTATAGACAAAAATATTTTGAATCGCACACTTAGTGCTACTTATAGCCAA
19710286 ATCTATTTTGAATCG
66 ATCTATTTTGAATCG
*
19710301 CACACTTAGTGCTACTTATAG-CAAAAATTATTTTGAATCGCACACTTAGTGTTACTTATAGCCG
1 CACACTTAGTGCTACTTATAGACAAAAA-TATTTTGAATCGCACACTTAGTGCTACTTATAGCC-
19710365 AAAT-TATTTTGAATCG
64 AAATCTATTTTGAATCG
19710381 CACACTTAGTGC
1 CACACTTAGTGC
19710393 CAAATGCAGT
Statistics
Matches: 83, Mismatches: 7, Indels: 4
0.88 0.07 0.04
Matches are distributed among these distances:
79 5 0.06
80 74 0.89
81 4 0.05
ACGTcount: A:0.32, C:0.18, G:0.14, T:0.36
Consensus pattern (80 bp):
CACACTTAGTGCTACTTATAGACAAAAATATTTTGAATCGCACACTTAGTGCTACTTATAGCCAA
ATCTATTTTGAATCG
Found at i:19712693 original size:22 final size:22
Alignment explanation
Indices: 19712666--19712709 Score: 70
Period size: 22 Copynumber: 2.0 Consensus size: 22
19712656 TAAATTGTGA
*
19712666 TAGATTTGAAAGTTTCAGGTTT
1 TAGATTTGAAAATTTCAGGTTT
*
19712688 TAGATTTGAAAATTTCGGGTTT
1 TAGATTTGAAAATTTCAGGTTT
19712710 AGGGACTAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.27, C:0.05, G:0.23, T:0.45
Consensus pattern (22 bp):
TAGATTTGAAAATTTCAGGTTT
Found at i:19713634 original size:21 final size:22
Alignment explanation
Indices: 19713589--19713643 Score: 67
Period size: 21 Copynumber: 2.5 Consensus size: 22
19713579 TGTAGGGCTC
*
19713589 ACACGCCCGTGTGGTCCAAGGG
1 ACACGCCCGTGTGGACCAAGGG
**
19713611 ACACGCCCGTGT-GACCCTGGG
1 ACACGCCCGTGTGGACCAAGGG
*
19713632 ACACGCTCGTGT
1 ACACGCCCGTGT
19713644 TGGAGGCCGT
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
21 17 0.59
22 12 0.41
ACGTcount: A:0.16, C:0.35, G:0.33, T:0.16
Consensus pattern (22 bp):
ACACGCCCGTGTGGACCAAGGG
Found at i:19719008 original size:27 final size:27
Alignment explanation
Indices: 19718967--19719124 Score: 198
Period size: 27 Copynumber: 5.9 Consensus size: 27
19718957 CGAGGCTGCT
* *
19718967 AGATATTGTGACAGAGTCACCAGATAC
1 AGATATTGTGGCAGAGCCACCAGATAC
19718994 AGATATTGTGGCAGAGCCACCAGA-AC
1 AGATATTGTGGCAGAGCCACCAGATAC
19719020 AGATATATGTGGCAGAGCCACCAGAT-C
1 AGATAT-TGTGGCAGAGCCACCAGATAC
* *
19719047 AGATAATTGTGGCATAGCCACCAG-GAC
1 AGAT-ATTGTGGCAGAGCCACCAGATAC
19719074 AGATATATGTGGCAGAGCCACCAGAT-C
1 AGATAT-TGTGGCAGAGCCACCAGATAC
* *
19719101 AAATAATTGTGGCATAGCCACCAG
1 AGAT-ATTGTGGCAGAGCCACCAG
19719125 GACACTTCCT
Statistics
Matches: 116, Mismatches: 8, Indels: 14
0.84 0.06 0.10
Matches are distributed among these distances:
26 10 0.09
27 102 0.88
28 4 0.03
ACGTcount: A:0.35, C:0.22, G:0.25, T:0.19
Consensus pattern (27 bp):
AGATATTGTGGCAGAGCCACCAGATAC
Found at i:19719125 original size:54 final size:54
Alignment explanation
Indices: 19718967--19719128 Score: 256
Period size: 54 Copynumber: 3.0 Consensus size: 54
19718957 CGAGGCTGCT
* * * *
19718967 AGATAT-TGTGACAGAGTCACCAGATACAGAT-ATTGTGGCAGAGCCACCAGAAC
1 AGATATATGTGGCAGAGCCACCAGAT-CAGATAATTGTGGCATAGCCACCAGGAC
19719020 AGATATATGTGGCAGAGCCACCAGATCAGATAATTGTGGCATAGCCACCAGGAC
1 AGATATATGTGGCAGAGCCACCAGATCAGATAATTGTGGCATAGCCACCAGGAC
*
19719074 AGATATATGTGGCAGAGCCACCAGATCAAATAATTGTGGCATAGCCACCAGGAC
1 AGATATATGTGGCAGAGCCACCAGATCAGATAATTGTGGCATAGCCACCAGGAC
19719128 A
1 A
19719129 CTTCCTCCAT
Statistics
Matches: 102, Mismatches: 5, Indels: 3
0.93 0.05 0.03
Matches are distributed among these distances:
53 11 0.11
54 91 0.89
ACGTcount: A:0.35, C:0.22, G:0.25, T:0.19
Consensus pattern (54 bp):
AGATATATGTGGCAGAGCCACCAGATCAGATAATTGTGGCATAGCCACCAGGAC
Found at i:19721284 original size:27 final size:27
Alignment explanation
Indices: 19721242--19721400 Score: 191
Period size: 27 Copynumber: 5.9 Consensus size: 27
19721232 GTGAGGCTGC
* *
19721242 CAGATATTGTGACAGAGTCACCAGATA
1 CAGATATTGTGGCAGAGCCACCAGATA
19721269 CAGATATTGTGGCAGAGCCACCAGA-A
1 CAGATATTGTGGCAGAGCCACCAGATA
19721295 CAGATATATGTGGCAGAGCCACCAGAT-
1 CAGATAT-TGTGGCAGAGCCACCAGATA
* * *
19721322 CAGATAATCGTGGCATAGCCACCAG-GA
1 CAGAT-ATTGTGGCAGAGCCACCAGATA
19721349 CAGATATATGTGGCAGAGCCACCAGAT-
1 CAGATAT-TGTGGCAGAGCCACCAGATA
* *
19721376 CAAATAATTGTGGCATAGCCACCAG
1 CAGAT-ATTGTGGCAGAGCCACCAG
19721401 GACGCTTCCT
Statistics
Matches: 115, Mismatches: 10, Indels: 14
0.83 0.07 0.10
Matches are distributed among these distances:
26 10 0.09
27 101 0.88
28 4 0.03
ACGTcount: A:0.35, C:0.23, G:0.25, T:0.18
Consensus pattern (27 bp):
CAGATATTGTGGCAGAGCCACCAGATA
Found at i:19721401 original size:54 final size:54
Alignment explanation
Indices: 19721242--19721403 Score: 247
Period size: 54 Copynumber: 3.0 Consensus size: 54
19721232 GTGAGGCTGC
* * * *
19721242 CAGATAT-TGTGACAGAGTCACCAGATACAGAT-ATTGTGGCAGAGCCACCAGAA
1 CAGATATATGTGGCAGAGCCACCAGAT-CAGATAATTGTGGCATAGCCACCAGGA
*
19721295 CAGATATATGTGGCAGAGCCACCAGATCAGATAATCGTGGCATAGCCACCAGGA
1 CAGATATATGTGGCAGAGCCACCAGATCAGATAATTGTGGCATAGCCACCAGGA
*
19721349 CAGATATATGTGGCAGAGCCACCAGATCAAATAATTGTGGCATAGCCACCAGGA
1 CAGATATATGTGGCAGAGCCACCAGATCAGATAATTGTGGCATAGCCACCAGGA
19721403 C
1 C
19721404 GCTTCCTCCA
Statistics
Matches: 100, Mismatches: 7, Indels: 3
0.91 0.06 0.03
Matches are distributed among these distances:
53 12 0.12
54 88 0.88
ACGTcount: A:0.35, C:0.23, G:0.25, T:0.18
Consensus pattern (54 bp):
CAGATATATGTGGCAGAGCCACCAGATCAGATAATTGTGGCATAGCCACCAGGA
Found at i:19723048 original size:26 final size:26
Alignment explanation
Indices: 19723017--19723072 Score: 103
Period size: 26 Copynumber: 2.2 Consensus size: 26
19723007 TGAAATGCCC
19723017 ATCATGGAACATTTACCTAAACCATT
1 ATCATGGAACATTTACCTAAACCATT
*
19723043 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAAACCATT
19723069 ATCA
1 ATCA
19723073 ATTTTTATCA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.38, C:0.25, G:0.07, T:0.30
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAAACCATT
Found at i:19729350 original size:118 final size:119
Alignment explanation
Indices: 19729169--19729390 Score: 299
Period size: 118 Copynumber: 1.9 Consensus size: 119
19729159 TCCTCGTTCA
*
19729169 AATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
1 AATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
* *
19729234 TTAGTAAC-TCGCACAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
66 ATAGTAACTTAGCACAAA-GCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
* * **
19729288 AATGCCTTCGGG-CTTAGCCCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGTCCGG
1 AATGCCTTCGGGACATAGCCCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGG
* * *
19729350 ATATGGTCACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
64 ATATAGTAACTTAGCACAAAGCCTTCGGGACTTAACCCGGA
19729391 CATCATTCAA
Statistics
Matches: 90, Mismatches: 10, Indels: 7
0.84 0.09 0.07
Matches are distributed among these distances:
117 4 0.04
118 66 0.73
119 20 0.22
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (119 bp):
AATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
ATAGTAACTTAGCACAAAGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
Found at i:19729390 original size:40 final size:40
Alignment explanation
Indices: 19729167--19729390 Score: 287
Period size: 40 Copynumber: 5.7 Consensus size: 40
19729157 GCTCCTCGTT
* *
19729167 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* *
19729207 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* *
19729247 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
*
19729287 C-AATGCCTTCGGG-CTTAGCCCGGA-ATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCA
* * * *
19729325 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATATAGTAAC-TCGCA
19729366 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
19729391 CATCATTCAA
Statistics
Matches: 164, Mismatches: 13, Indels: 14
0.86 0.07 0.07
Matches are distributed among these distances:
38 24 0.15
39 21 0.13
40 107 0.65
41 12 0.07
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
Found at i:19737250 original size:40 final size:40
Alignment explanation
Indices: 19737028--19737250 Score: 278
Period size: 40 Copynumber: 5.7 Consensus size: 40
19737018 GCTCCTCGTT
* *
19737028 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* *
19737068 CAAATGCCTTCGGGACTTA-ACCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* *
19737107 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
*
19737147 C-AATGCCTTCGGG-CTTAGCCCGGA-ATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCA
* * * *
19737185 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATATAGTAAC-TCGCA
19737226 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
19737251 CATCATTCAA
Statistics
Matches: 161, Mismatches: 14, Indels: 16
0.84 0.07 0.08
Matches are distributed among these distances:
38 24 0.15
39 57 0.35
40 68 0.42
41 12 0.07
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
Found at i:19743733 original size:93 final size:92
Alignment explanation
Indices: 19743606--19743775 Score: 288
Period size: 93 Copynumber: 1.8 Consensus size: 92
19743596 CGCCCTAAGT
*
19743606 GAACTCGGACTCACTCAACGAGCTCAGGCGTTCGCATCCATAAATGAACTCGGACTCAACTCAAC
1 GAACTCGGACTCACTCAACGAGCTCAGGCATTCGCATCCATAAATGAACTCGGACTCAACTCAAC
19743671 GAGTTCGGATGCCTAGTTACATCTCAC
66 GAGTTCGGATGCCTAGTTACATCTCAC
* *
19743698 GAACTCGGACTCAACTCAACGAGTTC-GGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 GAACTCGGACTC-ACTCAACGAGCTCAGG-CATTCGCATCCATAAATGAACTCGGACTCAACTCA
19743762 ACGAGTTCGGATGC
64 ACGAGTTCGGATGC
19743776 TCAACCATCC
Statistics
Matches: 73, Mismatches: 3, Indels: 3
0.92 0.04 0.04
Matches are distributed among these distances:
92 14 0.19
93 59 0.81
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (92 bp):
GAACTCGGACTCACTCAACGAGCTCAGGCATTCGCATCCATAAATGAACTCGGACTCAACTCAAC
GAGTTCGGATGCCTAGTTACATCTCAC
Found at i:19743765 original size:46 final size:46
Alignment explanation
Indices: 19743601--19743772 Score: 194
Period size: 46 Copynumber: 3.7 Consensus size: 46
19743591 TAACCCGCCC
* *
19743601 TAAGTGAACTCGGACTC-ACTCAACGAGCTCAGG-CGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTC-GGACATTCGCATCCA
* *
19743646 TAAATGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT-C-
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCATCCA
* *
19743694 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
19743739 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
19743773 TGCTCAACCA
Statistics
Matches: 107, Mismatches: 9, Indels: 21
0.78 0.07 0.15
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 20 0.19
46 41 0.38
47 29 0.27
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.30, C:0.28, G:0.20, T:0.22
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
Found at i:19743791 original size:46 final size:44
Alignment explanation
Indices: 19743650--19743791 Score: 137
Period size: 46 Copynumber: 3.1 Consensus size: 44
19743640 CATCCATAAA
19743650 TGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTA-CATCTCA-
1 TGAACTCGGACTCAACTCAACGAGTTCGGATGCC-A---ACCATCT-AG
* * * *
19743697 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCAT-AAG
1 TGAACTCGGACTCAACTCAACGAGTTCGG--ATGC-CAACCATCTAG
19743743 TGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCCTAG
1 TGAACTCGGACTCAACTCAACGAGTTCGGATGC-CAACCAT-CTAG
19743789 TGA
1 TGA
19743792 CATGTAAATT
Statistics
Matches: 79, Mismatches: 9, Indels: 15
0.77 0.09 0.15
Matches are distributed among these distances:
44 9 0.11
45 1 0.01
46 33 0.42
47 31 0.39
49 4 0.05
50 1 0.01
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.23
Consensus pattern (44 bp):
TGAACTCGGACTCAACTCAACGAGTTCGGATGCCAACCATCTAG
Found at i:19768715 original size:19 final size:20
Alignment explanation
Indices: 19768691--19768728 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
19768681 GGTACCACCA
19768691 AAACAT-ATATCA-CATCTTT
1 AAACATCAT-TCATCATCTTT
19768710 AAACATCATTCATCATCTT
1 AAACATCATTCATCATCTT
19768729 ACCACCTTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.39, C:0.24, G:0.00, T:0.37
Consensus pattern (20 bp):
AAACATCATTCATCATCTTT
Found at i:19769069 original size:47 final size:49
Alignment explanation
Indices: 19768952--19769126 Score: 183
Period size: 46 Copynumber: 3.8 Consensus size: 49
19768942 TAACCCGCCC
* * * *
19768952 TAAGTGAACTCGGACTCAACTCAACGAGCTCGG--G-CGTTCGCATCCA
1 TAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGCCATTCACATCCA
*
19768998 TAA-TGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT-C-
1 TAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGCC-A-TTCACATCCA
* *
19769045 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGA---CATTCGCATCCA
1 TAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGCCATTCACATCCA
*
19769090 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGC
1 TAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGC
19769127 TCAACCATCC
Statistics
Matches: 109, Mismatches: 8, Indels: 21
0.79 0.06 0.15
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 30 0.28
46 32 0.29
47 32 0.29
48 2 0.02
49 3 0.03
50 2 0.02
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.22
Consensus pattern (49 bp):
TAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGCCATTCACATCCA
Found at i:19769071 original size:92 final size:93
Alignment explanation
Indices: 19768957--19769126 Score: 306
Period size: 92 Copynumber: 1.8 Consensus size: 93
19768947 CGCCCTAAGT
* *
19768957 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAA-TGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
19769021 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
19769049 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
19769114 CGAGTTCGGATGC
66 CGAGTTCGGATGC
19769127 TCAACCATCC
Statistics
Matches: 74, Mismatches: 3, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
92 41 0.55
93 33 0.45
ACGTcount: A:0.28, C:0.29, G:0.21, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:19773209 original size:20 final size:19
Alignment explanation
Indices: 19773184--19773249 Score: 71
Period size: 20 Copynumber: 3.3 Consensus size: 19
19773174 CCTTAACAAT
*
19773184 TATAAAAATAGAAATAAATA
1 TATAAAAATACAAA-AAATA
*
19773204 TATAAAAATTCAAAAAAATA
1 TATAAAAATAC-AAAAAATA
19773224 TATACAAAAT-CTAAAAAATA
1 TATA-AAAATAC-AAAAAATA
19773244 TATAAA
1 TATAAA
19773250 TTATAAACAT
Statistics
Matches: 41, Mismatches: 3, Indels: 5
0.84 0.06 0.10
Matches are distributed among these distances:
19 2 0.05
20 31 0.76
21 8 0.20
ACGTcount: A:0.68, C:0.05, G:0.02, T:0.26
Consensus pattern (19 bp):
TATAAAAATACAAAAAATA
Found at i:19773232 original size:22 final size:20
Alignment explanation
Indices: 19773199--19773247 Score: 73
Period size: 20 Copynumber: 2.5 Consensus size: 20
19773189 AAATAGAAAT
19773199 AAATATATA-AAAATTCAAAA
1 AAATATATACAAAA-TCAAAA
*
19773219 AAATATATACAAAATCTAAA
1 AAATATATACAAAATCAAAA
19773239 AAATATATA
1 AAATATATA
19773248 AATTATAAAC
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
20 23 0.85
21 4 0.15
ACGTcount: A:0.67, C:0.06, G:0.00, T:0.27
Consensus pattern (20 bp):
AAATATATACAAAATCAAAA
Found at i:19773256 original size:18 final size:18
Alignment explanation
Indices: 19773203--19773268 Score: 53
Period size: 18 Copynumber: 3.6 Consensus size: 18
19773193 AGAAATAAAT
*
19773203 ATATAAAAATTCA-AAAAA
1 ATATATAAATT-ATAAAAA
* *
19773221 ATATATACAAAATCTAAAAA
1 ATATAT--AAATTATAAAAA
*
19773241 ATATATAAATTATAAACA
1 ATATATAAATTATAAAAA
*
19773259 TTATATAAAT
1 ATATATAAAT
19773269 GGAAATATTT
Statistics
Matches: 38, Mismatches: 7, Indels: 6
0.75 0.14 0.12
Matches are distributed among these distances:
18 23 0.61
20 15 0.39
ACGTcount: A:0.64, C:0.06, G:0.00, T:0.30
Consensus pattern (18 bp):
ATATATAAATTATAAAAA
Found at i:19775367 original size:31 final size:31
Alignment explanation
Indices: 19775295--19775367 Score: 101
Period size: 31 Copynumber: 2.4 Consensus size: 31
19775285 CAAACTGATA
*
19775295 ATTGAACTATTCGAAAGTTTTCATTTAAGTT
1 ATTGAACTATTCGAAAGTTTTCATTTAAGTC
* * *
19775326 ACTGAACTATTTGAAAGTTTTTATTTAAGTC
1 ATTGAACTATTCGAAAGTTTTCATTTAAGTC
*
19775357 ATTGAGCTATT
1 ATTGAACTATT
19775368 AAGGGTGTTT
Statistics
Matches: 36, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
31 36 1.00
ACGTcount: A:0.32, C:0.10, G:0.14, T:0.45
Consensus pattern (31 bp):
ATTGAACTATTCGAAAGTTTTCATTTAAGTC
Found at i:19779671 original size:19 final size:19
Alignment explanation
Indices: 19779647--19779686 Score: 80
Period size: 19 Copynumber: 2.1 Consensus size: 19
19779637 TACTTGAAAC
19779647 TAAATATTTATACGTTAAT
1 TAAATATTTATACGTTAAT
19779666 TAAATATTTATACGTTAAT
1 TAAATATTTATACGTTAAT
19779685 TA
1 TA
19779687 CAGAAAAATC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.42, C:0.05, G:0.05, T:0.47
Consensus pattern (19 bp):
TAAATATTTATACGTTAAT
Found at i:19781360 original size:27 final size:28
Alignment explanation
Indices: 19781320--19781397 Score: 117
Period size: 27 Copynumber: 2.9 Consensus size: 28
19781310 GCATTTGATG
*
19781320 TATATAATTA-TAAAAATTTATTAAA-T
1 TATAAAATTATTAAAAATTTATTAAATT
19781346 TATAAAATTATTAAAAATTTA-TAAATT
1 TATAAAATTATTAAAAATTTATTAAATT
*
19781373 TATAAAATTATCAAAAATTTATTAA
1 TATAAAATTATTAAAAATTTATTAA
19781398 TATATATATT
Statistics
Matches: 47, Mismatches: 2, Indels: 4
0.89 0.04 0.08
Matches are distributed among these distances:
26 13 0.28
27 31 0.66
28 3 0.06
ACGTcount: A:0.55, C:0.01, G:0.00, T:0.44
Consensus pattern (28 bp):
TATAAAATTATTAAAAATTTATTAAATT
Found at i:19781369 original size:19 final size:18
Alignment explanation
Indices: 19781320--19781394 Score: 82
Period size: 18 Copynumber: 4.2 Consensus size: 18
19781310 GCATTTGATG
*
19781320 TATATAATTATAAAAATT
1 TATAAAATTATAAAAATT
* *
19781338 TATTAAATTATAAAATTAT
1 TATAAAATTATAAAAAT-T
*
19781357 TA-AAAATT-TATAAATT
1 TATAAAATTATAAAAATT
19781373 TATAAAATTATCAAAAATT
1 TATAAAATTAT-AAAAATT
19781392 TAT
1 TAT
19781395 TAATATATAT
Statistics
Matches: 46, Mismatches: 7, Indels: 7
0.77 0.12 0.12
Matches are distributed among these distances:
16 3 0.07
17 11 0.24
18 20 0.43
19 12 0.26
ACGTcount: A:0.55, C:0.01, G:0.00, T:0.44
Consensus pattern (18 bp):
TATAAAATTATAAAAATT
Found at i:19781371 original size:8 final size:8
Alignment explanation
Indices: 19781333--19781424 Score: 51
Period size: 8 Copynumber: 10.6 Consensus size: 8
19781323 ATAATTATAA
19781333 AAATTTATT
1 AAATTTA-T
19781342 AAA-TTAT
1 AAATTTAT
*
19781349 AAAATTATTAA
1 -AAA-T-TTAT
19781360 AAATTTAT
1 AAATTTAT
19781368 AAATTTAT
1 AAATTTAT
*
19781376 AAAATTATCAA
1 -AAATT-T-AT
19781387 AAATTTAT
1 AAATTTAT
* *
19781395 TAATATAT
1 AAATTTAT
* *
19781403 ATATTTTT
1 AAATTTAT
19781411 ATAATTTAT
1 A-AATTTAT
19781420 AAATT
1 AAATT
19781425 ATATCCTTTA
Statistics
Matches: 63, Mismatches: 12, Indels: 17
0.68 0.13 0.18
Matches are distributed among these distances:
7 1 0.02
8 33 0.52
9 16 0.25
10 9 0.14
11 4 0.06
ACGTcount: A:0.51, C:0.01, G:0.00, T:0.48
Consensus pattern (8 bp):
AAATTTAT
Found at i:19781626 original size:16 final size:17
Alignment explanation
Indices: 19781589--19781630 Score: 59
Period size: 16 Copynumber: 2.5 Consensus size: 17
19781579 TGTAGTCTTT
*
19781589 ATAAATTTATAATTTTC
1 ATAAATTTATAATTTAC
*
19781606 ATAAATTTTTAA-TTAC
1 ATAAATTTATAATTTAC
19781622 ATAAATTTA
1 ATAAATTTA
19781631 GATCCTTATT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
16 11 0.50
17 11 0.50
ACGTcount: A:0.45, C:0.05, G:0.00, T:0.50
Consensus pattern (17 bp):
ATAAATTTATAATTTAC
Found at i:19785129 original size:22 final size:22
Alignment explanation
Indices: 19785104--19785145 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
19785094 TGTGAGTTTT
*
19785104 ATTTAAATTTATTATGATTTAG
1 ATTTAAATATATTATGATTTAG
* *
19785126 ATTTGAATATATTTTGATTT
1 ATTTAAATATATTATGATTT
19785146 TCAATTCATT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 17 1.00
ACGTcount: A:0.33, C:0.00, G:0.10, T:0.57
Consensus pattern (22 bp):
ATTTAAATATATTATGATTTAG
Found at i:19785349 original size:6 final size:6
Alignment explanation
Indices: 19785340--19785368 Score: 58
Period size: 6 Copynumber: 4.8 Consensus size: 6
19785330 AACTATTAAA
19785340 AATATT AATATT AATATT AATATT AATAT
1 AATATT AATATT AATATT AATATT AATAT
19785369 ATTTTTTTTA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (6 bp):
AATATT
Found at i:19788920 original size:35 final size:35
Alignment explanation
Indices: 19788881--19788953 Score: 146
Period size: 35 Copynumber: 2.1 Consensus size: 35
19788871 GGTATGTGAT
19788881 ATATATATTATTTATGTGAGATTGATCTGACGAGA
1 ATATATATTATTTATGTGAGATTGATCTGACGAGA
19788916 ATATATATTATTTATGTGAGATTGATCTGACGAGA
1 ATATATATTATTTATGTGAGATTGATCTGACGAGA
19788951 ATA
1 ATA
19788954 AAGAATGTGT
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 38 1.00
ACGTcount: A:0.36, C:0.05, G:0.19, T:0.40
Consensus pattern (35 bp):
ATATATATTATTTATGTGAGATTGATCTGACGAGA
Found at i:19789896 original size:27 final size:27
Alignment explanation
Indices: 19789854--19789943 Score: 135
Period size: 27 Copynumber: 3.3 Consensus size: 27
19789844 CCTTCTTGAC
* *
19789854 AGGCGACACTGATTGAGGACACGCCAG
1 AGGCGGCACTGGTTGAGGACACGCCAG
* *
19789881 AGGCGGTACTGGTTGAGGGCACGCCAG
1 AGGCGGCACTGGTTGAGGACACGCCAG
*
19789908 AGGCGGCACTGGTTGAGGTCACGCCAG
1 AGGCGGCACTGGTTGAGGACACGCCAG
19789935 AGGCGGCAC
1 AGGCGGCAC
19789944 CAGTGAAGCC
Statistics
Matches: 57, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 57 1.00
ACGTcount: A:0.22, C:0.26, G:0.40, T:0.12
Consensus pattern (27 bp):
AGGCGGCACTGGTTGAGGACACGCCAG
Found at i:19793964 original size:23 final size:23
Alignment explanation
Indices: 19793931--19794035 Score: 192
Period size: 23 Copynumber: 4.6 Consensus size: 23
19793921 TGTCCCCAAG
* *
19793931 CACACGAGCGTGTGTAATGCCTC
1 CACACGGGCGTGTGTAACGCCTC
19793954 CACACGGGCGTGTGTAACGCCTC
1 CACACGGGCGTGTGTAACGCCTC
19793977 CACACGGGCGTGTGTAACGCCTC
1 CACACGGGCGTGTGTAACGCCTC
19794000 CACACGGGCGTGTGTAACGCCTC
1 CACACGGGCGTGTGTAACGCCTC
19794023 CACACGGGCGTGT
1 CACACGGGCGTGT
19794036 AAGGCTTTAA
Statistics
Matches: 80, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
23 80 1.00
ACGTcount: A:0.18, C:0.33, G:0.30, T:0.18
Consensus pattern (23 bp):
CACACGGGCGTGTGTAACGCCTC
Found at i:19796560 original size:26 final size:25
Alignment explanation
Indices: 19796512--19796577 Score: 69
Period size: 26 Copynumber: 2.5 Consensus size: 25
19796502 GACTAGCAGT
*
19796512 TTAAAAATATATAATCCAAAGCCCAA
1 TTAAAAAT-TAAAATCCAAAGCCCAA
* **
19796538 TTAAAAATTAAAATCGAATAGCCTTA
1 TTAAAAATTAAAATCCAA-AGCCCAA
19796564 TTACAAAATTAAAA
1 TTA-AAAATTAAAA
19796578 ACCCAAAAGT
Statistics
Matches: 34, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
25 8 0.24
26 16 0.47
27 10 0.29
ACGTcount: A:0.55, C:0.14, G:0.05, T:0.27
Consensus pattern (25 bp):
TTAAAAATTAAAATCCAAAGCCCAA
Found at i:19800870 original size:46 final size:45
Alignment explanation
Indices: 19800820--19800994 Score: 221
Period size: 46 Copynumber: 3.8 Consensus size: 45
19800810 TGGTTGAGCA
19800820 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* * * *
19800866 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGAATGTAACTAG-GCA-
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACT-TATG-GA-T-GCGAAG
19800912 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* *
19800958 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
19800995 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 10, Indels: 16
0.81 0.07 0.12
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 2 0.02
46 99 0.89
47 2 0.02
48 3 0.03
49 1 0.01
ACGTcount: A:0.21, C:0.21, G:0.29, T:0.29
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAG
Found at i:19800974 original size:92 final size:92
Alignment explanation
Indices: 19800817--19800986 Score: 313
Period size: 92 Copynumber: 1.8 Consensus size: 92
19800807 GGATGGTTGA
* *
19800817 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
19800882 TGAGTCCGAGTTCGTGAATGTAACTAG
66 TGAGTCCGAGTTCGTGAATGTAACTAG
*
19800909 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
19800974 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
19800987 ACTTATGGGC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
92 75 1.00
ACGTcount: A:0.21, C:0.22, G:0.29, T:0.28
Consensus pattern (92 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAATGTAACTAG
Found at i:19803941 original size:29 final size:30
Alignment explanation
Indices: 19803899--19803975 Score: 88
Period size: 29 Copynumber: 2.6 Consensus size: 30
19803889 CATAGTATCG
*
19803899 TATCTTGGGTTTCTTTATCCTGGATCTT-T-
1 TATCTTGGATTTCTTTATCCTGGAT-TTCTC
* *
19803928 TAT-TCTGGATTTCTTTATTCTGGGTTTCTC
1 TATCT-TGGATTTCTTTATCCTGGATTTCTC
19803958 TATCTTGGATTTCTTTAT
1 TATCTTGGATTTCTTTAT
19803976 TCGGTTTTCT
Statistics
Matches: 41, Mismatches: 3, Indels: 7
0.80 0.06 0.14
Matches are distributed among these distances:
28 3 0.07
29 21 0.51
30 16 0.39
31 1 0.02
ACGTcount: A:0.12, C:0.16, G:0.16, T:0.57
Consensus pattern (30 bp):
TATCTTGGATTTCTTTATCCTGGATTTCTC
Found at i:19803946 original size:15 final size:15
Alignment explanation
Indices: 19803908--19803986 Score: 83
Period size: 15 Copynumber: 5.4 Consensus size: 15
19803898 GTATCTTGGG
*
19803908 TTTCTTTATCCTGGA
1 TTTCTTTATTCTGGA
*
19803923 TCT-TTTATTCTGGA
1 TTTCTTTATTCTGGA
*
19803937 TTTCTTTATTCTGGG
1 TTTCTTTATTCTGGA
*
19803952 TTTCTCTA-TCTTGGA
1 TTTCTTTATTC-TGGA
*
19803967 TTTCTTTATTC-GGT
1 TTTCTTTATTCTGGA
19803981 TTTCTT
1 TTTCTT
19803987 GTTATCTTTG
Statistics
Matches: 53, Mismatches: 8, Indels: 7
0.78 0.12 0.10
Matches are distributed among these distances:
14 22 0.42
15 29 0.55
16 2 0.04
ACGTcount: A:0.10, C:0.16, G:0.14, T:0.59
Consensus pattern (15 bp):
TTTCTTTATTCTGGA
Found at i:19810453 original size:60 final size:60
Alignment explanation
Indices: 19810347--19810461 Score: 142
Period size: 60 Copynumber: 1.9 Consensus size: 60
19810337 GATTATATTA
* * * *
19810347 ATATTAAATTTAATTTAATGTTTATCTACAAGATAAACATTCTATTATTTTAATAAGATTTC
1 ATATTAAATTTAATATAATATTTATCT--AAGATAAACATTATATTAATTTAATAAGATTTC
* *
19810409 ATATTAAATTATAATATAATATTTATCT-TGATAAATATTATATTAATTTAATA
1 ATATTAAATT-TAATATAATATTTATCTAAGATAAACATTATATTAATTTAATA
19810462 TTAAAATGAT
Statistics
Matches: 46, Mismatches: 6, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
60 21 0.46
62 10 0.22
63 15 0.33
ACGTcount: A:0.43, C:0.05, G:0.03, T:0.48
Consensus pattern (60 bp):
ATATTAAATTTAATATAATATTTATCTAAGATAAACATTATATTAATTTAATAAGATTTC
Found at i:19811335 original size:16 final size:16
Alignment explanation
Indices: 19811314--19811359 Score: 51
Period size: 16 Copynumber: 2.9 Consensus size: 16
19811304 TATAATTGTT
19811314 TATAATATTTATATTA
1 TATAATATTTATATTA
19811330 TATAAT-TTTATAATTA
1 TATAATATTTAT-ATTA
*
19811346 TGAT-ATATATATAT
1 T-ATAATATTTATAT
19811360 GAGATGATCC
Statistics
Matches: 26, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
15 5 0.19
16 15 0.58
17 6 0.23
ACGTcount: A:0.43, C:0.00, G:0.02, T:0.54
Consensus pattern (16 bp):
TATAATATTTATATTA
Found at i:19815537 original size:101 final size:101
Alignment explanation
Indices: 19815425--19815616 Score: 321
Period size: 101 Copynumber: 1.9 Consensus size: 101
19815415 CTTACATTCG
*
19815425 TAGTGCCATAACCCAGTTACGGTCTTATCATCAGAACACCATAGCCCAGCTATGGTCTTATATAT
1 TAGTGCCATAACCCAGTTACGGTCTTATCATCAGAACACCATAGCCCAGCTATGGTCTTACATAT
* *
19815490 AAACACTGCCATGGTCCAACCATGGTCTTATGTCCA
66 AAACACTACCATAGTCCAACCATGGTCTTATGTCCA
* ***
19815526 TAGTGCCATAACCCAGTTATGGTCTTATCATCAGAATGTCATAGCCCAGCTATGGTCTTACATAT
1 TAGTGCCATAACCCAGTTACGGTCTTATCATCAGAACACCATAGCCCAGCTATGGTCTTACATAT
19815591 AAACACTACCATAGTCCAACCATGGT
66 AAACACTACCATAGTCCAACCATGGT
19815617 TTTACGTGTT
Statistics
Matches: 84, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
101 84 1.00
ACGTcount: A:0.30, C:0.27, G:0.16, T:0.28
Consensus pattern (101 bp):
TAGTGCCATAACCCAGTTACGGTCTTATCATCAGAACACCATAGCCCAGCTATGGTCTTACATAT
AAACACTACCATAGTCCAACCATGGTCTTATGTCCA
Found at i:19822310 original size:29 final size:29
Alignment explanation
Indices: 19822278--19822336 Score: 91
Period size: 29 Copynumber: 2.0 Consensus size: 29
19822268 TTTTAATAGT
* *
19822278 TTAATATTAGATTTTATTTAATACTTATC
1 TTAATATTAAATTTAATTTAATACTTATC
*
19822307 TTAATATTAAATTTAATTTAATATTTATC
1 TTAATATTAAATTTAATTTAATACTTATC
19822336 T
1 T
19822337 ATAAGATAAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
29 27 1.00
ACGTcount: A:0.37, C:0.05, G:0.02, T:0.56
Consensus pattern (29 bp):
TTAATATTAAATTTAATTTAATACTTATC
Found at i:19822346 original size:29 final size:29
Alignment explanation
Indices: 19822278--19822343 Score: 78
Period size: 29 Copynumber: 2.2 Consensus size: 29
19822268 TTTTAATAGT
* * *
19822278 TTAATATTAGATTTTATTTAATACTTATC
1 TTAAGATTAAATTTAATTTAATACTTATC
* *
19822307 TTAATATTAAATTTAATTTAATATTTATC
1 TTAAGATTAAATTTAATTTAATACTTATC
19822336 TATAAGAT
1 T-TAAGAT
19822344 AAACATTCTA
Statistics
Matches: 32, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
29 27 0.84
30 5 0.16
ACGTcount: A:0.39, C:0.05, G:0.03, T:0.53
Consensus pattern (29 bp):
TTAAGATTAAATTTAATTTAATACTTATC
Found at i:19822391 original size:18 final size:19
Alignment explanation
Indices: 19822370--19822408 Score: 55
Period size: 18 Copynumber: 2.1 Consensus size: 19
19822360 TAATAAGATA
19822370 TAATATTAA-ATTTAA-ATT
1 TAATA-TAATATTTAATATT
19822388 TAATATAATATTTAATATT
1 TAATATAATATTTAATATT
19822407 TA
1 TA
19822409 TCTTGATAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
17 3 0.16
18 11 0.58
19 5 0.26
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (19 bp):
TAATATAATATTTAATATT
Found at i:19822400 original size:12 final size:12
Alignment explanation
Indices: 19822367--19822405 Score: 53
Period size: 12 Copynumber: 3.3 Consensus size: 12
19822357 TTTTAATAAG
*
19822367 ATATAATATTAA
1 ATATAATATTTA
*
19822379 ATTTAA-ATTTA
1 ATATAATATTTA
19822390 ATATAATATTTA
1 ATATAATATTTA
19822402 ATAT
1 ATAT
19822406 TTATCTTGAT
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
11 9 0.39
12 14 0.61
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (12 bp):
ATATAATATTTA
Found at i:19830945 original size:27 final size:26
Alignment explanation
Indices: 19830860--19830945 Score: 84
Period size: 27 Copynumber: 3.2 Consensus size: 26
19830850 AAACACACTA
*
19830860 GCGAACACCGACTTGCC-AATAGACTA
1 GCGAACACC-ACTTGCCAAATAGACTG
* * * *
19830886 GCGAACACTAGCTTGCCAAACATAGTG
1 GCGAACACCA-CTTGCCAAATAGACTG
19830913 GCGAACACCACCTTGCCAAATAGACTG
1 GCGAACACCA-CTTGCCAAATAGACTG
*
19830940 GTGAAC
1 GCGAAC
19830946 CCCATTACTG
Statistics
Matches: 47, Mismatches: 11, Indels: 3
0.77 0.18 0.05
Matches are distributed among these distances:
25 1 0.02
26 14 0.30
27 32 0.68
ACGTcount: A:0.34, C:0.29, G:0.21, T:0.16
Consensus pattern (26 bp):
GCGAACACCACTTGCCAAATAGACTG
Found at i:19840315 original size:42 final size:42
Alignment explanation
Indices: 19840268--19840379 Score: 130
Period size: 42 Copynumber: 2.8 Consensus size: 42
19840258 TTCCACTTTA
*
19840268 CTTCCTTTTTTGTCTAAACCTGGA-GATTGCTTTCCCAATTTG
1 CTTCCTTTTTTGTCTAAACATGGATG-TTGCTTTCCCAATTTG
* *
19840310 CTTCCTTTTTTGTCTAAACATGGATGTTGTTTTCCCAAGTTG
1 CTTCCTTTTTTGTCTAAACATGGATGTTGCTTTCCCAATTTG
*
19840352 --T--TTTTTT-T-TAGACATGGATGTTGCTTTC
1 CTTCCTTTTTTGTCTAAACATGGATGTTGCTTTC
19840380 TCACGTTACT
Statistics
Matches: 64, Mismatches: 5, Indels: 8
0.83 0.06 0.10
Matches are distributed among these distances:
36 18 0.28
37 1 0.02
38 6 0.09
40 1 0.02
42 37 0.58
43 1 0.02
ACGTcount: A:0.16, C:0.19, G:0.16, T:0.49
Consensus pattern (42 bp):
CTTCCTTTTTTGTCTAAACATGGATGTTGCTTTCCCAATTTG
Found at i:19841018 original size:24 final size:23
Alignment explanation
Indices: 19840973--19841016 Score: 79
Period size: 23 Copynumber: 1.9 Consensus size: 23
19840963 AATAACATAG
*
19840973 TTTTAATAAATGCAAAAAAAATA
1 TTTTAATAAATGAAAAAAAAATA
19840996 TTTTAATAAATGAAAAAAAAA
1 TTTTAATAAATGAAAAAAAAA
19841017 ATTGAACTAT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.64, C:0.02, G:0.05, T:0.30
Consensus pattern (23 bp):
TTTTAATAAATGAAAAAAAAATA
Found at i:19845214 original size:11 final size:11
Alignment explanation
Indices: 19845198--19845223 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
19845188 TGGAAAAAGG
19845198 ATAAAAGAAAA
1 ATAAAAGAAAA
19845209 ATAAAAGAAAA
1 ATAAAAGAAAA
19845220 ATAA
1 ATAA
19845224 TTAAACAATA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.81, C:0.00, G:0.08, T:0.12
Consensus pattern (11 bp):
ATAAAAGAAAA
Found at i:19845242 original size:22 final size:22
Alignment explanation
Indices: 19845208--19845251 Score: 56
Period size: 22 Copynumber: 2.0 Consensus size: 22
19845198 ATAAAAGAAA
19845208 AATAAAAGAAAAATAAT-TAAAC
1 AATAAAAGAAAAA-AATCTAAAC
19845230 AATAAAA-ACAAAAAATCTAAAC
1 AATAAAAGA-AAAAAATCTAAAC
19845252 CTACCCGTGA
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
21 4 0.20
22 16 0.80
ACGTcount: A:0.73, C:0.09, G:0.02, T:0.16
Consensus pattern (22 bp):
AATAAAAGAAAAAAATCTAAAC
Found at i:19845521 original size:18 final size:18
Alignment explanation
Indices: 19845495--19845529 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
19845485 TAAATGCATT
*
19845495 TATTTATTAAATAAAATA
1 TATTAATTAAATAAAATA
*
19845513 TATTAATTAAATTAAAT
1 TATTAATTAAATAAAAT
19845530 GTATATTTTT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (18 bp):
TATTAATTAAATAAAATA
Found at i:19845720 original size:17 final size:17
Alignment explanation
Indices: 19845698--19845756 Score: 54
Period size: 17 Copynumber: 3.6 Consensus size: 17
19845688 GTTCGGTAGA
19845698 ATGGAAAAAATAGAAAG
1 ATGGAAAAAATAGAAAG
*
19845715 ATGG--AAAATTG-AAG
1 ATGGAAAAAATAGAAAG
19845729 A-GGTAGAAAAATAGAAAG
1 ATGG-A-AAAAATAGAAAG
*
19845747 ATAGAAAAAA
1 ATGGAAAAAA
19845757 AAATATTTTC
Statistics
Matches: 33, Mismatches: 3, Indels: 12
0.69 0.06 0.25
Matches are distributed among these distances:
13 2 0.06
14 4 0.12
15 6 0.18
17 15 0.45
18 5 0.15
19 1 0.03
ACGTcount: A:0.63, C:0.00, G:0.24, T:0.14
Consensus pattern (17 bp):
ATGGAAAAAATAGAAAG
Found at i:19845751 original size:16 final size:16
Alignment explanation
Indices: 19845703--19845755 Score: 63
Period size: 16 Copynumber: 3.3 Consensus size: 16
19845693 GTAGAATGGA
19845703 AAAAATAGAAAGAT-G
1 AAAAATAGAAAGATAG
* * *
19845718 GAAAATTGAAGAGGTAG
1 AAAAATAGAA-AGATAG
19845735 AAAAATAGAAAGATAG
1 AAAAATAGAAAGATAG
19845751 AAAAA
1 AAAAA
19845756 AAAATATTTT
Statistics
Matches: 30, Mismatches: 6, Indels: 3
0.77 0.15 0.08
Matches are distributed among these distances:
15 8 0.27
16 13 0.43
17 9 0.30
ACGTcount: A:0.64, C:0.00, G:0.23, T:0.13
Consensus pattern (16 bp):
AAAAATAGAAAGATAG
Found at i:19850514 original size:166 final size:166
Alignment explanation
Indices: 19850239--19850571 Score: 639
Period size: 166 Copynumber: 2.0 Consensus size: 166
19850229 ATTATTGCAA
* *
19850239 ATTCACTCTTTCACACTTTCTTTGTATTAACCTCACTTTTAGCATACATATCACAATTCATTTTT
1 ATTCACTCTTTCACACTTTCTTTGTATTAACCTCACTTTTAGCATACATATCACAATTCAGTTTC
19850304 ACCACATTTCATACATCACAAGTATAAGTCCATGATTACAATGCCACCGTAAAATTATCCCGTTG
66 ACCACATTTCATACATCACAAGTATAAGTCCATGATTACAATGCCACCGTAAAATTATCCCGTTG
19850369 AACAATTCGGATCAATCCTCGATACTTGATGGTTTC
131 AACAATTCGGATCAATCCTCGATACTTGATGGTTTC
19850405 ATTCACTCTTTCACACTTTCTTTGTATTAACCTCACTTTTAGCATACATATCACAATTCAGTTTC
1 ATTCACTCTTTCACACTTTCTTTGTATTAACCTCACTTTTAGCATACATATCACAATTCAGTTTC
*
19850470 ACCACATTTCATACATCACAAGTATAAGTCCATGATTTCAATGCCACCGTAAAATTATCCCGTTG
66 ACCACATTTCATACATCACAAGTATAAGTCCATGATTACAATGCCACCGTAAAATTATCCCGTTG
19850535 AACAATTCGGATCAATCCTCGATACTTGATGGTTTC
131 AACAATTCGGATCAATCCTCGATACTTGATGGTTTC
19850571 A
1 A
19850572 GCACACTGCC
Statistics
Matches: 164, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
166 164 1.00
ACGTcount: A:0.30, C:0.25, G:0.09, T:0.36
Consensus pattern (166 bp):
ATTCACTCTTTCACACTTTCTTTGTATTAACCTCACTTTTAGCATACATATCACAATTCAGTTTC
ACCACATTTCATACATCACAAGTATAAGTCCATGATTACAATGCCACCGTAAAATTATCCCGTTG
AACAATTCGGATCAATCCTCGATACTTGATGGTTTC
Found at i:19850811 original size:68 final size:68
Alignment explanation
Indices: 19850661--19850818 Score: 169
Period size: 68 Copynumber: 2.3 Consensus size: 68
19850651 CTAGCCAATT
* * *
19850661 TATCTCGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACACATGCGACCTAGCTACA
1 TATCTCGTAGCTCTCTTGTCTACATGGTGTACATCAC-TCGAATCACACATGCGACCTAGCTACA
**
19850726 TTTA
65 CATA
* * *
19850730 TCTCTCCCGTAGCTCTCTTGTCTACATGG-GATACATC-C-CGTATCACACATGTGACCTAGCTA
1 TATCT--CGTAGCTCTCTTGTCTACATGGTG-TACATCACTCGAATCACACATGCGACCTAGCTA
19850792 CTACATA
63 C-ACATA
19850799 GTATCTCGTAGCTCTCTTGT
1 -TATCTCGTAGCTCTCTTGT
19850819 ACACGTGATG
Statistics
Matches: 75, Mismatches: 9, Indels: 11
0.79 0.09 0.12
Matches are distributed among these distances:
68 36 0.48
69 7 0.09
70 6 0.08
71 26 0.35
ACGTcount: A:0.21, C:0.29, G:0.16, T:0.34
Consensus pattern (68 bp):
TATCTCGTAGCTCTCTTGTCTACATGGTGTACATCACTCGAATCACACATGCGACCTAGCTACAC
ATA
Found at i:19853630 original size:14 final size:13
Alignment explanation
Indices: 19853602--19853627 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
19853592 ATAATACCTG
19853602 GCCAAGCCTAAAA
1 GCCAAGCCTAAAA
19853615 GCCAAGCCTAAAA
1 GCCAAGCCTAAAA
19853628 AGCTTCTAAC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.46, C:0.31, G:0.15, T:0.08
Consensus pattern (13 bp):
GCCAAGCCTAAAA
Found at i:19870963 original size:21 final size:21
Alignment explanation
Indices: 19870939--19870981 Score: 86
Period size: 21 Copynumber: 2.0 Consensus size: 21
19870929 TCGGGCCGGG
19870939 TATAGGATATTAAAGTGACTA
1 TATAGGATATTAAAGTGACTA
19870960 TATAGGATATTAAAGTGACTA
1 TATAGGATATTAAAGTGACTA
19870981 T
1 T
19870982 CGCCTTTTCG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.42, C:0.05, G:0.19, T:0.35
Consensus pattern (21 bp):
TATAGGATATTAAAGTGACTA
Found at i:19876932 original size:25 final size:25
Alignment explanation
Indices: 19876904--19877044 Score: 228
Period size: 25 Copynumber: 5.6 Consensus size: 25
19876894 CATATATATT
* *
19876904 CGCACACATAGTGCCATAAAATTTC
1 CGCACACTTAGTGCCATACAATTTC
19876929 CGCACACTTAGTGCCATACAATTTC
1 CGCACACTTAGTGCCATACAATTTC
*
19876954 CACACACTTAGTGCCATACAATTTC
1 CGCACACTTAGTGCCATACAATTTC
* *
19876979 CGCACAGTTAGTGCCATATAATTTC
1 CGCACACTTAGTGCCATACAATTTC
*
19877004 CGCACACTTAGTGCCATATAATTTC
1 CGCACACTTAGTGCCATACAATTTC
19877029 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
19877045 AGTCATTTCG
Statistics
Matches: 109, Mismatches: 7, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
25 109 1.00
ACGTcount: A:0.30, C:0.30, G:0.13, T:0.28
Consensus pattern (25 bp):
CGCACACTTAGTGCCATACAATTTC
Found at i:19882521 original size:46 final size:45
Alignment explanation
Indices: 19882467--19882642 Score: 194
Period size: 46 Copynumber: 3.8 Consensus size: 45
19882457 TGGTTGAGCA
19882467 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* * *** * *
19882513 TCCTAACTCGTTGAGTTGAGTCTGAGTTCGAGAGATGTAACTAG-GCA-
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-GCGAAG
*
19882560 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* *
19882606 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
19882643 GCGGGTTACA
Statistics
Matches: 107, Mismatches: 16, Indels: 14
0.78 0.12 0.10
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 1 0.01
46 67 0.63
47 30 0.28
48 1 0.01
49 3 0.03
50 1 0.01
ACGTcount: A:0.21, C:0.20, G:0.29, T:0.30
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAG
Found at i:19882623 original size:93 final size:93
Alignment explanation
Indices: 19882464--19882634 Score: 288
Period size: 93 Copynumber: 1.8 Consensus size: 93
19882454 GGATGGTTGA
* * *
19882464 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCTAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
*
19882529 TGAGTCTGAGTTCGAGAGATGTAACTAG
66 TGAGTCCGAGTTCGAGAGATGTAACTAG
* *
19882557 GCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
19882622 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
19882635 ACTTATGGGC
Statistics
Matches: 72, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.21, C:0.21, G:0.29, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGAGAGATGTAACTAG
Found at i:19890964 original size:41 final size:40
Alignment explanation
Indices: 19890917--19890998 Score: 137
Period size: 41 Copynumber: 2.0 Consensus size: 40
19890907 TGAGAAAGAA
* *
19890917 AACTTTCAATTGGTGTAAGTGGTATGAAAAAAGAAAGCTAT
1 AACTTTCAATTGGTGTAAATAGTATGAAAAAA-AAAGCTAT
19890958 AACTTTCAATTGGTGTAAATAGTATGAAAAAAAAAGCTAT
1 AACTTTCAATTGGTGTAAATAGTATGAAAAAAAAAGCTAT
19890998 A
1 A
19890999 CAATAATGAT
Statistics
Matches: 39, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
40 9 0.23
41 30 0.77
ACGTcount: A:0.45, C:0.07, G:0.18, T:0.29
Consensus pattern (40 bp):
AACTTTCAATTGGTGTAAATAGTATGAAAAAAAAAGCTAT
Found at i:19895646 original size:37 final size:37
Alignment explanation
Indices: 19895596--19895683 Score: 131
Period size: 37 Copynumber: 2.4 Consensus size: 37
19895586 TAGAGAATTG
* *
19895596 TTTTCTTAATATTATTTGAGATTGATCCAAAATGTTA
1 TTTTCTTAATATTATTTAAGATTGATCCAAAAGGTTA
* *
19895633 TTTTCTTAATATTATTTAAGATTGATTCAAAGGGTTA
1 TTTTCTTAATATTATTTAAGATTGATCCAAAAGGTTA
*
19895670 TTTTCTTGATATTA
1 TTTTCTTAATATTA
19895684 ATCTTGTTTG
Statistics
Matches: 46, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 46 1.00
ACGTcount: A:0.31, C:0.07, G:0.11, T:0.51
Consensus pattern (37 bp):
TTTTCTTAATATTATTTAAGATTGATCCAAAAGGTTA
Found at i:19900290 original size:104 final size:103
Alignment explanation
Indices: 19900110--19900332 Score: 367
Period size: 104 Copynumber: 2.2 Consensus size: 103
19900100 TGTATATAAA
** * *
19900110 AGGGGTTGCTGTGTGCTGATTCCCCGATTTATGGGTGGTGCTATGTGCGTGATCCACCATATCTT
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATGGGTGGTGCTAAGTGCGTGATCCACCATATCTT
19900175 TGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
66 TGAAATGTGAAAGGGGGTTGCTATGTGCTGATT-CCCCG
* *
19900214 AGGGGTTGCTAAGTGCTGATTCCCCGGTTCATTGGTGGTGCTAAGTGCGAT-ATCCACCATATCT
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATGGGTGGTGCTAAGTGCG-TGATCCACCATATCT
19900278 TTGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCG
65 TTGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCG
19900317 AGGGGTTGCTAAGTGC
1 AGGGGTTGCTAAGTGC
19900333 GATATCCATT
Statistics
Matches: 112, Mismatches: 6, Indels: 3
0.93 0.05 0.02
Matches are distributed among these distances:
103 21 0.19
104 90 0.80
105 1 0.01
ACGTcount: A:0.18, C:0.19, G:0.32, T:0.31
Consensus pattern (103 bp):
AGGGGTTGCTAAGTGCTGATTCCCCGATTCATGGGTGGTGCTAAGTGCGTGATCCACCATATCTT
TGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCG
Found at i:19900384 original size:70 final size:72
Alignment explanation
Indices: 19900252--19900402 Score: 243
Period size: 71 Copynumber: 2.1 Consensus size: 72
19900242 TCATTGGTGG
* *
19900252 TGCTAAGTGCGATATCCACCATATCTTTGAAATGTGAAAGGGGGTTGCTATGTGCTGATT-CCCC
1 TGCTAAGTGCGATATCCACCATATATTTGAAATGTAAAAGGGGGTTGCTATGTGCTGATTCCCCC
19900316 GAGGGGT
66 GAGGGGT
***
19900323 TGCTAAGTGCGATATCCATTGTATATTTGAAATG-AAAAGGGGGTTGCTATGTGCTGATTCCCCC
1 TGCTAAGTGCGATATCCACCATATATTTGAAATGTAAAAGGGGGTTGCTATGTGCTGATTCCCCC
19900387 GAGGGGT
66 GAGGGGT
19900394 TGCTAAGTG
1 TGCTAAGTG
19900403 ATGATTCCCC
Statistics
Matches: 74, Mismatches: 5, Indels: 2
0.91 0.06 0.02
Matches are distributed among these distances:
70 24 0.32
71 50 0.68
ACGTcount: A:0.23, C:0.17, G:0.30, T:0.30
Consensus pattern (72 bp):
TGCTAAGTGCGATATCCACCATATATTTGAAATGTAAAAGGGGGTTGCTATGTGCTGATTCCCCC
GAGGGGT
Found at i:19907839 original size:104 final size:104
Alignment explanation
Indices: 19907659--19907882 Score: 378
Period size: 104 Copynumber: 2.2 Consensus size: 104
19907649 TGTATATAAA
** * *
19907659 AGGGGTTGCTGTGTGCTGATTCCCCGATTTATGGGTGGTGCTATGTGCGTGATCCACCATATCTT
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATGGGTGGTGCTAAGTGCGTGATCCACCATATCTT
19907724 TGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
66 TGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
* *
19907763 AGGGGTTGCTAAGTGCTGATTCCCCGGTTCATTGGTGGTGCTAAGTGCGAT-ATCCACCATATCT
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATGGGTGGTGCTAAGTGCG-TGATCCACCATATCT
19907827 TTGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
65 TTGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
19907867 AGGGGTTGCTAAGTGC
1 AGGGGTTGCTAAGTGC
19907883 GATATCCATT
Statistics
Matches: 113, Mismatches: 6, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
104 112 0.99
105 1 0.01
ACGTcount: A:0.18, C:0.19, G:0.32, T:0.31
Consensus pattern (104 bp):
AGGGGTTGCTAAGTGCTGATTCCCCGATTCATGGGTGGTGCTAAGTGCGTGATCCACCATATCTT
TGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
Found at i:19907934 original size:71 final size:72
Alignment explanation
Indices: 19907801--19907952 Score: 252
Period size: 71 Copynumber: 2.1 Consensus size: 72
19907791 TCATTGGTGG
* *
19907801 TGCTAAGTGCGATATCCACCATATCTTTGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCC
1 TGCTAAGTGCGATATCCACCATATATTTGAAATGTAAAAGGGGGTTGCTATGTGCTGATTCCCCC
19907866 GAGGGGT
66 GAGGGGT
***
19907873 TGCTAAGTGCGATATCCATTGTATATTTGAAATG-AAAAGGGGGTTGCTATGTGCTGATTCCCCC
1 TGCTAAGTGCGATATCCACCATATATTTGAAATGTAAAAGGGGGTTGCTATGTGCTGATTCCCCC
19907937 GAGGGGT
66 GAGGGGT
19907944 TGCTAAGTG
1 TGCTAAGTG
19907953 ATGATTCCCC
Statistics
Matches: 75, Mismatches: 5, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
71 45 0.60
72 30 0.40
ACGTcount: A:0.23, C:0.17, G:0.30, T:0.30
Consensus pattern (72 bp):
TGCTAAGTGCGATATCCACCATATATTTGAAATGTAAAAGGGGGTTGCTATGTGCTGATTCCCCC
GAGGGGT
Found at i:19915985 original size:116 final size:115
Alignment explanation
Indices: 19915781--19916010 Score: 399
Period size: 116 Copynumber: 2.0 Consensus size: 115
19915771 CCTTTCTTGA
19915781 TCCGAATTAAGCTTCCAAATAGCCGAAACTTAGAACTCTTTATCTTTTATTTTTGTTCTTCAATT
1 TCCGAATTAAGCTTCCAAATAGCCGAAACTTAGAACTCTTTATCTTTTATTTTTGTTCTTCAATT
* *
19915846 TTCGGCACAAACAAAGAATAAAATGCCTATTTTCAAGTTTTGTTATATCAG
66 TTCGGCACAAACAAAGAATAAAATGACTATTTTCAAG-TTTCTTATATCAG
* *
19915897 TCCGAATTAAGCTTCCAAATAGCCGAACCTTAGAACTCTTTATCTTTTCTTTTTGTTCTTCAATT
1 TCCGAATTAAGCTTCCAAATAGCCGAAACTTAGAACTCTTTATCTTTTATTTTTGTTCTTCAATT
19915962 TTCGGCACAAACAAA-ACATAAAATGACTATTTTCAAGTTTCTTATATCA
66 TTCGGCACAAACAAAGA-ATAAAATGACTATTTTCAAGTTTCTTATATCA
19916011 TATATTAATT
Statistics
Matches: 109, Mismatches: 4, Indels: 3
0.94 0.03 0.03
Matches are distributed among these distances:
115 12 0.11
116 97 0.89
ACGTcount: A:0.32, C:0.20, G:0.10, T:0.39
Consensus pattern (115 bp):
TCCGAATTAAGCTTCCAAATAGCCGAAACTTAGAACTCTTTATCTTTTATTTTTGTTCTTCAATT
TTCGGCACAAACAAAGAATAAAATGACTATTTTCAAGTTTCTTATATCAG
Found at i:19917213 original size:6 final size:6
Alignment explanation
Indices: 19917199--19917229 Score: 53
Period size: 6 Copynumber: 5.2 Consensus size: 6
19917189 AGTATTAACT
*
19917199 TTTTAA TTTTGA TTTTGA TTTTGA TTTTGA T
1 TTTTGA TTTTGA TTTTGA TTTTGA TTTTGA T
19917230 AATTTTGTTT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
6 24 1.00
ACGTcount: A:0.19, C:0.00, G:0.13, T:0.68
Consensus pattern (6 bp):
TTTTGA
Found at i:19917779 original size:19 final size:19
Alignment explanation
Indices: 19917727--19917763 Score: 60
Period size: 19 Copynumber: 2.1 Consensus size: 19
19917717 TCAATAGTTG
19917727 AATTA-GAAA-AATATAAA
1 AATTATGAAATAATATAAA
19917744 AATTATGAAATAATATAAA
1 AATTATGAAATAATATAAA
19917763 A
1 A
19917764 CTATATTAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
17 5 0.28
18 4 0.22
19 9 0.50
ACGTcount: A:0.68, C:0.00, G:0.05, T:0.27
Consensus pattern (19 bp):
AATTATGAAATAATATAAA
Found at i:19922482 original size:24 final size:24
Alignment explanation
Indices: 19922455--19922502 Score: 60
Period size: 24 Copynumber: 2.0 Consensus size: 24
19922445 GTTCAGGAAC
*
19922455 AAGCTCGTATATTGGCTAGTTTAT
1 AAGCTCGTATATTGACTAGTTTAT
* * *
19922479 AAGCTTGTTTATTGACTCGTTTAT
1 AAGCTCGTATATTGACTAGTTTAT
19922503 TTATTAATGA
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.23, C:0.12, G:0.19, T:0.46
Consensus pattern (24 bp):
AAGCTCGTATATTGACTAGTTTAT
Found at i:19925535 original size:25 final size:26
Alignment explanation
Indices: 19925473--19925541 Score: 74
Period size: 25 Copynumber: 2.8 Consensus size: 26
19925463 AGTTTAAGCA
*
19925473 AGCCA-ATATCAGGAAGCT-CTAGAG
1 AGCCATATATCAGGAAGCTCCGAGAG
* *
19925497 AGCC-TTTAAACAGGAAGCTCCGA-AG
1 AGCCATAT-ATCAGGAAGCTCCGAGAG
19925522 AGCCATATATCAGGAAGCTC
1 AGCCATATATCAGGAAGCTC
19925542 ATAGGAGCTG
Statistics
Matches: 36, Mismatches: 5, Indels: 7
0.75 0.10 0.15
Matches are distributed among these distances:
24 5 0.14
25 27 0.75
26 4 0.11
ACGTcount: A:0.36, C:0.23, G:0.23, T:0.17
Consensus pattern (26 bp):
AGCCATATATCAGGAAGCTCCGAGAG
Found at i:19925549 original size:25 final size:24
Alignment explanation
Indices: 19925473--19925549 Score: 68
Period size: 25 Copynumber: 3.1 Consensus size: 24
19925463 AGTTTAAGCA
19925473 AGCCA-ATATCAGGAAGCTCTAGAG
1 AGCCATATATCAGGAAGCTCTAG-G
* * * *
19925497 AGCC-TTTAAACAGGAAGCTCCGAAG
1 AGCCATAT-ATCAGGAAGCT-CTAGG
19925522 AGCCATATATCAGGAAGCTCATAGG
1 AGCCATATATCAGGAAGCTC-TAGG
19925547 AGC
1 AGC
19925550 TGCAGTGTGT
Statistics
Matches: 40, Mismatches: 8, Indels: 9
0.70 0.14 0.16
Matches are distributed among these distances:
24 6 0.15
25 30 0.75
26 4 0.10
ACGTcount: A:0.36, C:0.22, G:0.25, T:0.17
Consensus pattern (24 bp):
AGCCATATATCAGGAAGCTCTAGG
Found at i:19929330 original size:13 final size:13
Alignment explanation
Indices: 19929312--19929337 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
19929302 TAATATTAGT
19929312 TTAATAATAATAA
1 TTAATAATAATAA
19929325 TTAATAATAATAA
1 TTAATAATAATAA
19929338 ACAAAACAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (13 bp):
TTAATAATAATAA
Found at i:19930772 original size:42 final size:42
Alignment explanation
Indices: 19930723--19930876 Score: 227
Period size: 42 Copynumber: 3.6 Consensus size: 42
19930713 TGAGATTACG
***
19930723 TGTAAGACCATATCTGGGATATGGCATCGATATGAGATCTTG
1 TGTAAGACCATATCTGGGATATGGCATCGATATGAGATCCCA
* *
19930765 TGTAAGACCATAGCTGGGCTATTGGCATCGATATGAGATCCCA
1 TGTAAGACCATATCTGGGATA-TGGCATCGATATGAGATCCCA
* *
19930808 TGTAAGACCATATTTGGGATATGACATCGATATGAGATCCCA
1 TGTAAGACCATATCTGGGATATGGCATCGATATGAGATCCCA
*
19930850 TATAAGACCATATCTGGGATATGGCAT
1 TGTAAGACCATATCTGGGATATGGCAT
19930877 TGGTATGGTA
Statistics
Matches: 99, Mismatches: 12, Indels: 2
0.88 0.11 0.02
Matches are distributed among these distances:
42 63 0.64
43 36 0.36
ACGTcount: A:0.31, C:0.17, G:0.24, T:0.29
Consensus pattern (42 bp):
TGTAAGACCATATCTGGGATATGGCATCGATATGAGATCCCA
Found at i:19932628 original size:40 final size:40
Alignment explanation
Indices: 19932554--19932725 Score: 206
Period size: 40 Copynumber: 4.3 Consensus size: 40
19932544 GATAACTGGA
* * * *
19932554 CTAAGATCCGAAGGCATTCGTGCGAGTTGCTATATCCGGG
1 CTAAGACCCGAAGGCATTTGTGCAAGTTGTTATATCCGGG
* * * * *
19932594 CTATGTCCTGAAGGCATTTATGCTAG-TGATTATATCCGGG
1 CTAAGACCCGAAGGCATTTGTGCAAGTTG-TTATATCCGGG
*
19932634 CTAAGACCCGAAGGCATTTGTGCAAGTTGCTATATCCGGG
1 CTAAGACCCGAAGGCATTTGTGCAAGTTGTTATATCCGGG
*
19932674 CTAAGACCCGAAGGCATTTGTGCGAGTTGTTATATCC-GG
1 CTAAGACCCGAAGGCATTTGTGCAAGTTGTTATATCCGGG
19932713 CTAA-ATCCCGAAG
1 CTAAGA-CCCGAAG
19932726 ATACTTGGGT
Statistics
Matches: 113, Mismatches: 16, Indels: 7
0.83 0.12 0.05
Matches are distributed among these distances:
38 1 0.01
39 15 0.13
40 95 0.84
41 2 0.02
ACGTcount: A:0.24, C:0.22, G:0.27, T:0.27
Consensus pattern (40 bp):
CTAAGACCCGAAGGCATTTGTGCAAGTTGTTATATCCGGG
Found at i:19932687 original size:80 final size:79
Alignment explanation
Indices: 19932554--19932725 Score: 231
Period size: 80 Copynumber: 2.2 Consensus size: 79
19932544 GATAACTGGA
* * * * * *
19932554 CTAAGATCCGAAGGCATTCGTGCGAGTTGCTATATCCGGGCTATGTCCTGAAGGCATTTATGCTA
1 CTAAGACCCGAAGGCATTCGTGCAAGTTGCTATATCCGGGCTAAGACCCGAAGGCATTTATGCGA
19932619 G-TGATTATATCCGGG
66 GTTG-TTATATCC-GG
* *
19932634 CTAAGACCCGAAGGCATTTGTGCAAGTTGCTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA
1 CTAAGACCCGAAGGCATTCGTGCAAGTTGCTATATCCGGGCTAAGACCCGAAGGCATTTATGCGA
19932699 GTTGTTATATCCGG
66 GTTGTTATATCCGG
19932713 CTAA-ATCCCGAAG
1 CTAAGA-CCCGAAG
19932726 ATACTTGGGT
Statistics
Matches: 82, Mismatches: 8, Indels: 5
0.86 0.08 0.05
Matches are distributed among these distances:
78 1 0.01
79 13 0.16
80 66 0.80
81 2 0.02
ACGTcount: A:0.24, C:0.22, G:0.27, T:0.27
Consensus pattern (79 bp):
CTAAGACCCGAAGGCATTCGTGCAAGTTGCTATATCCGGGCTAAGACCCGAAGGCATTTATGCGA
GTTGTTATATCCGG
Found at i:19940610 original size:40 final size:40
Alignment explanation
Indices: 19940531--19940707 Score: 234
Period size: 40 Copynumber: 4.5 Consensus size: 40
19940521 CGGATGATAA
* * * *
19940531 CCGGACTAAGATCCGAAGGCATTCGTGCGAGTTGCTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
* * * *
19940571 CCGGGCTATGTCCCGAAGGCATTTATGCTAG-TGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-TTATAT
*
19940611 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
19940651 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
19940691 CC-GGCTAA-ATCCCGAAG
1 CCGGGCTAAGA-CCCGAAG
19940708 ATACTTGGGT
Statistics
Matches: 120, Mismatches: 14, Indels: 7
0.85 0.10 0.05
Matches are distributed among these distances:
38 1 0.01
39 15 0.12
40 102 0.85
41 2 0.02
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
Found at i:19940975 original size:22 final size:22
Alignment explanation
Indices: 19940935--19940976 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
19940925 GAATGTGCAT
*
19940935 ATATGAAGTTATTCATTTAGCC
1 ATATGAAGTTATACATTTAGCC
19940957 ATATGAATGTTATAC-TTTAG
1 ATATGAA-GTTATACATTTAG
19940977 TCAAAACTAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
22 12 0.67
23 6 0.33
ACGTcount: A:0.33, C:0.10, G:0.14, T:0.43
Consensus pattern (22 bp):
ATATGAAGTTATACATTTAGCC
Found at i:19945168 original size:50 final size:50
Alignment explanation
Indices: 19945044--19945292 Score: 284
Period size: 50 Copynumber: 4.8 Consensus size: 50
19945034 GATAATAACA
* * ** * *
19945044 TGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGATGTTCTCGTGAT-GG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGA-CCTCTCAT-CTCGG
* *
19945095 TGCCCATGCCATGTCCCAGACATGGTCTTATAGGGGACCTCTCATCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATCTCGG
* * *
19945145 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGTCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATCTCGG
* *
19945195 TGCCCATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATGATCTTAAGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTC---ATC-T-CGG
* *
19945250 ATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCTCT
1 -TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCT
19945293 TTACCCAAAT
Statistics
Matches: 170, Mismatches: 21, Indels: 9
0.85 0.10 0.05
Matches are distributed among these distances:
49 1 0.01
50 92 0.54
51 33 0.19
53 2 0.01
54 1 0.01
55 2 0.01
56 39 0.23
ACGTcount: A:0.20, C:0.29, G:0.24, T:0.26
Consensus pattern (50 bp):
TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATCTCGG
Found at i:19945222 original size:100 final size:104
Alignment explanation
Indices: 19945043--19945292 Score: 357
Period size: 100 Copynumber: 2.4 Consensus size: 104
19945033 TGATAATAAC
**
19945043 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGATGTTCTCGTGATGGTGCCCATGCCATG
1 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGA-CCTCTCGTGATGGTGCCCATGCCATG
* *
19945108 TCCCAGACATGGTCTTATAGGGGACCTCTC-ATC-T-CGG
65 TCCCAGACATGGTCTTACAGGGGACCTCTCAATCTTAAGG
* *
19945145 -TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGT-CTCGGTGCCCATGCCATG
1 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGTGAT-GGTGCCCATGCCATG
19945208 TCCCAGACATGGTCTTACAGGGGACCTCTCATGATCTTAAGG
65 TCCCAGACATGGTCTTACAGGGGACCTCTCA--ATCTTAAGG
* *
19945250 ATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCTCT
1 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGACCTCT
19945293 TTACCCAAAT
Statistics
Matches: 133, Mismatches: 8, Indels: 10
0.88 0.05 0.07
Matches are distributed among these distances:
99 1 0.01
100 50 0.38
101 36 0.27
103 3 0.02
104 1 0.01
105 2 0.02
106 40 0.30
ACGTcount: A:0.21, C:0.29, G:0.24, T:0.26
Consensus pattern (104 bp):
ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGTGATGGTGCCCATGCCATGT
CCCAGACATGGTCTTACAGGGGACCTCTCAATCTTAAGG
Found at i:19945408 original size:13 final size:13
Alignment explanation
Indices: 19945387--19945418 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
19945377 GCTTGGATCA
*
19945387 TCATCAAATAAAT
1 TCATAAAATAAAT
19945400 TCATAAAATAAAT
1 TCATAAAATAAAT
19945413 TCATAA
1 TCATAA
19945419 TTGCTGGAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.56, C:0.12, G:0.00, T:0.31
Consensus pattern (13 bp):
TCATAAAATAAAT
Found at i:19945665 original size:30 final size:30
Alignment explanation
Indices: 19945630--19945687 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 30
19945620 CCTCGACTCT
*
19945630 AACTTTTTCAAAATTACAATTTTGCCCCTA
1 AACTTTTACAAAATTACAATTTTGCCCCTA
* *
19945660 AACTTTTACATAATTACATTTTTGCCCC
1 AACTTTTACAAAATTACAATTTTGCCCC
19945688 AAGGCTCGGA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.31, C:0.24, G:0.03, T:0.41
Consensus pattern (30 bp):
AACTTTTACAAAATTACAATTTTGCCCCTA
Found at i:19952755 original size:50 final size:50
Alignment explanation
Indices: 19952631--19952879 Score: 284
Period size: 50 Copynumber: 4.8 Consensus size: 50
19952621 GATAATAACA
* * ** * *
19952631 TGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGATGTTCTCGTGAT-GG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGA-CCTCTCAT-CTCGG
* *
19952682 TGCCCATGCCATGTCCCAGACATGGTCTTATAGGGGACCTCTCATCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATCTCGG
* * *
19952732 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGTCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATCTCGG
* *
19952782 TGCCCATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATGATCTTAAGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTC---ATC-T-CGG
* *
19952837 ATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCTCT
1 -TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCT
19952880 TTACCCAAAT
Statistics
Matches: 170, Mismatches: 21, Indels: 9
0.85 0.10 0.05
Matches are distributed among these distances:
49 1 0.01
50 92 0.54
51 33 0.19
53 2 0.01
54 1 0.01
55 2 0.01
56 39 0.23
ACGTcount: A:0.20, C:0.29, G:0.24, T:0.26
Consensus pattern (50 bp):
TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATCTCGG
Found at i:19952809 original size:100 final size:104
Alignment explanation
Indices: 19952630--19952879 Score: 357
Period size: 100 Copynumber: 2.4 Consensus size: 104
19952620 TGATAATAAC
**
19952630 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGATGTTCTCGTGATGGTGCCCATGCCATG
1 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGA-CCTCTCGTGATGGTGCCCATGCCATG
* *
19952695 TCCCAGACATGGTCTTATAGGGGACCTCTC-ATC-T-CGG
65 TCCCAGACATGGTCTTACAGGGGACCTCTCAATCTTAAGG
* *
19952732 -TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGT-CTCGGTGCCCATGCCATG
1 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGTGAT-GGTGCCCATGCCATG
19952795 TCCCAGACATGGTCTTACAGGGGACCTCTCATGATCTTAAGG
65 TCCCAGACATGGTCTTACAGGGGACCTCTCA--ATCTTAAGG
* *
19952837 ATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCTCT
1 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGACCTCT
19952880 TTACCCAAAT
Statistics
Matches: 133, Mismatches: 8, Indels: 10
0.88 0.05 0.07
Matches are distributed among these distances:
99 1 0.01
100 50 0.38
101 36 0.27
103 3 0.02
104 1 0.01
105 2 0.02
106 40 0.30
ACGTcount: A:0.21, C:0.29, G:0.24, T:0.26
Consensus pattern (104 bp):
ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGTGATGGTGCCCATGCCATGT
CCCAGACATGGTCTTACAGGGGACCTCTCAATCTTAAGG
Done.