Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A06
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 115140250
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2234201 characters in sequence are not A, C, G, or T
File 72 of 345
Found at i:22931252 original size:31 final size:31
Alignment explanation
Indices: 22931217--22931296 Score: 106
Period size: 31 Copynumber: 2.6 Consensus size: 31
22931207 TTGCATTCAC
* *
22931217 ATTCTGATTTTGATTCTGTTACCTGATACTG
1 ATTCTGATTTTGATTCTATCACCTGATACTG
* * **
22931248 ATTCTGATTCTGATTCTATCACTTGATTTTG
1 ATTCTGATTTTGATTCTATCACCTGATACTG
22931279 ATTCTGATTTTGATTCTA
1 ATTCTGATTTTGATTCTA
22931297 GTTCTGATGA
Statistics
Matches: 42, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
31 42 1.00
ACGTcount: A:0.20, C:0.15, G:0.14, T:0.51
Consensus pattern (31 bp):
ATTCTGATTTTGATTCTATCACCTGATACTG
Found at i:22932740 original size:14 final size:14
Alignment explanation
Indices: 22932711--22932801 Score: 62
Period size: 14 Copynumber: 6.5 Consensus size: 14
22932701 ATAAAGCAAT
22932711 AATAAGAATAAG-AA
1 AATAA-AATAAGAAA
22932725 AATAAAATAAGAAA
1 AATAAAATAAGAAA
* * *
22932739 AATAAAAAAATAAC
1 AATAAAATAAGAAA
* *
22932753 AGT--AATAAGAAC
1 AATAAAATAAGAAA
22932765 AATAAAAATAAGTAAA
1 AAT-AAAATAAG-AAA
* *
22932781 AAGAAAAAAAGAAA
1 AATAAAATAAGAAA
*
22932795 AAGAAAA
1 AATAAAA
22932802 CAAATAATAA
Statistics
Matches: 62, Mismatches: 10, Indels: 10
0.76 0.12 0.12
Matches are distributed among these distances:
12 9 0.15
13 6 0.10
14 30 0.48
15 13 0.21
16 4 0.06
ACGTcount: A:0.76, C:0.02, G:0.10, T:0.12
Consensus pattern (14 bp):
AATAAAATAAGAAA
Found at i:22932869 original size:28 final size:28
Alignment explanation
Indices: 22932833--22932890 Score: 116
Period size: 28 Copynumber: 2.1 Consensus size: 28
22932823 AAGTAATAAG
22932833 AATAATTAAATAAATAAAAGAGAGGGGC
1 AATAATTAAATAAATAAAAGAGAGGGGC
22932861 AATAATTAAATAAATAAAAGAGAGGGGC
1 AATAATTAAATAAATAAAAGAGAGGGGC
22932889 AA
1 AA
22932891 AAGTGGGGGG
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 30 1.00
ACGTcount: A:0.59, C:0.03, G:0.21, T:0.17
Consensus pattern (28 bp):
AATAATTAAATAAATAAAAGAGAGGGGC
Found at i:22936932 original size:42 final size:42
Alignment explanation
Indices: 22936856--22936939 Score: 118
Period size: 42 Copynumber: 2.0 Consensus size: 42
22936846 CATATATGTA
*
22936856 TATATATATAGCCAAAGCTATTCCGATTCACACACTAAGTGC
1 TATATATATAGCCAAAGCTATTCCGAATCACACACTAAGTGC
*
22936898 TATATATATAGCCAAAGCTA-TCTCGAAAT-GCACACTAAGTGC
1 TATATATATAGCCAAAGCTATTC-CG-AATCACACACTAAGTGC
22936940 CAAACATAGT
Statistics
Matches: 38, Mismatches: 2, Indels: 4
0.86 0.05 0.09
Matches are distributed among these distances:
41 2 0.05
42 34 0.89
43 2 0.05
ACGTcount: A:0.37, C:0.23, G:0.13, T:0.27
Consensus pattern (42 bp):
TATATATATAGCCAAAGCTATTCCGAATCACACACTAAGTGC
Found at i:22938603 original size:15 final size:15
Alignment explanation
Indices: 22938583--22938613 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
22938573 TTCAAACTAT
22938583 CATGTATTAATTTCA
1 CATGTATTAATTTCA
*
22938598 CATGTATTACTTTCA
1 CATGTATTAATTTCA
22938613 C
1 C
22938614 TTTTTCTTCT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.29, C:0.19, G:0.06, T:0.45
Consensus pattern (15 bp):
CATGTATTAATTTCA
Found at i:22947877 original size:28 final size:28
Alignment explanation
Indices: 22947837--22947894 Score: 107
Period size: 28 Copynumber: 2.1 Consensus size: 28
22947827 CGGCCCAGAC
*
22947837 TAGTTCTGAATTCTTTCTGTTTACTAAT
1 TAGTTATGAATTCTTTCTGTTTACTAAT
22947865 TAGTTATGAATTCTTTCTGTTTACTAAT
1 TAGTTATGAATTCTTTCTGTTTACTAAT
22947893 TA
1 TA
22947895 TTTTAATTTA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.24, C:0.12, G:0.10, T:0.53
Consensus pattern (28 bp):
TAGTTATGAATTCTTTCTGTTTACTAAT
Found at i:22954307 original size:20 final size:20
Alignment explanation
Indices: 22954260--22954326 Score: 73
Period size: 20 Copynumber: 3.2 Consensus size: 20
22954250 ACACCATACT
*
22954260 AGAGGCATCATAGATGCATAAC
1 AGAGGCATCAAAG-TGCA-AAC
*
22954282 AAAGGCATCAAAGTGCAAAC
1 AGAGGCATCAAAGTGCAAAC
*
22954302 AGAGGCA-CAAATGTGCAAGC
1 AGAGGCATCAAA-GTGCAAAC
22954322 AGAGG
1 AGAGG
22954327 AACTTAGTGT
Statistics
Matches: 40, Mismatches: 4, Indels: 4
0.83 0.08 0.08
Matches are distributed among these distances:
19 4 0.10
20 21 0.52
21 4 0.10
22 11 0.28
ACGTcount: A:0.43, C:0.18, G:0.27, T:0.12
Consensus pattern (20 bp):
AGAGGCATCAAAGTGCAAAC
Found at i:22961113 original size:21 final size:21
Alignment explanation
Indices: 22961088--22961128 Score: 82
Period size: 21 Copynumber: 2.0 Consensus size: 21
22961078 CATATTCACC
22961088 TACACAAATCCATTCATCTTA
1 TACACAAATCCATTCATCTTA
22961109 TACACAAATCCATTCATCTT
1 TACACAAATCCATTCATCTT
22961129 TTAACATATC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.37, C:0.29, G:0.00, T:0.34
Consensus pattern (21 bp):
TACACAAATCCATTCATCTTA
Found at i:22966044 original size:17 final size:18
Alignment explanation
Indices: 22966017--22966050 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
22966007 AATCAAATAT
22966017 ATGCATATTAAATTATTA
1 ATGCATATTAAATTATTA
*
22966035 ATGC-TATTAATTTATT
1 ATGCATATTAAATTATT
22966051 TAAACAAAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 11 0.73
18 4 0.27
ACGTcount: A:0.38, C:0.06, G:0.06, T:0.50
Consensus pattern (18 bp):
ATGCATATTAAATTATTA
Found at i:22975882 original size:43 final size:43
Alignment explanation
Indices: 22975833--22976159 Score: 435
Period size: 43 Copynumber: 7.6 Consensus size: 43
22975823 ATGTGTACAA
* *
22975833 GTAAGACCACGTCTAGGATGTTGGCATCGATATGTGATTACGT
1 GTAAGACCACGTCTGGGACGTTGGCATCGATATGTGATTACGT
* * * *
22975876 GCAAGACCATGTCTGGGACGTTGGCATTGATATGTGATTACAT
1 GTAAGACCACGTCTGGGACGTTGGCATCGATATGTGATTACGT
* * *
22975919 GTAAGACCACGTCTGAGACGTTGGCATTGATATGTGATTATGT
1 GTAAGACCACGTCTGGGACGTTGGCATCGATATGTGATTACGT
* *
22975962 GTAAGACCACGTCTGAGACGTTGGCATCGATATGTGATTATGT
1 GTAAGACCACGTCTGGGACGTTGGCATCGATATGTGATTACGT
* * *
22976005 G-AAGACCATGTCTAGGACGTTGGCATCGATATGTGATTATGT
1 GTAAGACCACGTCTGGGACGTTGGCATCGATATGTGATTACGT
* * *
22976047 GTAAGACCACGTCTGGGACGTTGGCATCGATATATGTTTACGA
1 GTAAGACCACGTCTGGGACGTTGGCATCGATATGTGATTACGT
* *
22976090 GTAAGA-CACTGTTTGGGACAG-TGGCATCGATATGTGATTACAT
1 GTAAGACCAC-GTCTGGGAC-GTTGGCATCGATATGTGATTACGT
*
22976133 GTAAGACCACGTTTGGGACGTTGGCAT
1 GTAAGACCACGTCTGGGACGTTGGCAT
22976160 TGTACGATAT
Statistics
Matches: 253, Mismatches: 26, Indels: 10
0.88 0.09 0.03
Matches are distributed among these distances:
42 43 0.17
43 206 0.81
44 4 0.02
ACGTcount: A:0.26, C:0.16, G:0.28, T:0.30
Consensus pattern (43 bp):
GTAAGACCACGTCTGGGACGTTGGCATCGATATGTGATTACGT
Found at i:22976124 original size:171 final size:171
Alignment explanation
Indices: 22975835--22976159 Score: 467
Period size: 171 Copynumber: 1.9 Consensus size: 171
22975825 GTGTACAAGT
* *
22975835 AAGACCACGTCTAGGATGTTGGCATCGATATGTGATTACGTGCAAGACCATGTCTGGGACGTTGG
1 AAGACCACGTCTAGGACGTTGGCATCGATATGTGATTACGTGCAAGACCACGTCTGGGACGTTGG
* * * **
22975900 CATTGATATGTGATTACATGTAAGACCACGTCTGAGACGTTGGCATTGATATGTGATTATGTGTA
66 CATCGATATATGATTACATGTAAGACCACGTCTGAGACGTTGGCATCGATATGTGATTACATGTA
22975965 AGACCACGTCTGAGACGTTGGCATCGATATGTGATTATGTG
131 AGACCACGTCTGAGACGTTGGCATCGATATGTGATTATGTG
* * *
22976006 AAGACCATGTCTAGGACGTTGGCATCGATATGTGATTATGTGTAAGACCACGTCTGGGACGTTGG
1 AAGACCACGTCTAGGACGTTGGCATCGATATGTGATTACGTGCAAGACCACGTCTGGGACGTTGG
* * *
22976071 CATCGATATATGTTTACGA-GTAAGA-CACTGTTTGGGACAG-TGGCATCGATATGTGATTACAT
66 CATCGATATATGATTAC-ATGTAAGACCAC-GTCTGAGAC-GTTGGCATCGATATGTGATTACAT
* *
22976133 GTAAGACCACGTTTGGGACGTTGGCAT
128 GTAAGACCACGTCTGAGACGTTGGCAT
22976160 TGTACGATAT
Statistics
Matches: 136, Mismatches: 15, Indels: 6
0.87 0.10 0.04
Matches are distributed among these distances:
170 3 0.02
171 131 0.96
172 2 0.01
ACGTcount: A:0.26, C:0.16, G:0.28, T:0.30
Consensus pattern (171 bp):
AAGACCACGTCTAGGACGTTGGCATCGATATGTGATTACGTGCAAGACCACGTCTGGGACGTTGG
CATCGATATATGATTACATGTAAGACCACGTCTGAGACGTTGGCATCGATATGTGATTACATGTA
AGACCACGTCTGAGACGTTGGCATCGATATGTGATTATGTG
Found at i:22987418 original size:20 final size:20
Alignment explanation
Indices: 22987385--22987422 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
22987375 ACTAATTGTG
*
22987385 CATGTTATGCTTAAATGTTT
1 CATGTGATGCTTAAATGTTT
*
22987405 CATGTGATGGTTAAATGT
1 CATGTGATGCTTAAATGT
22987423 GGTATATCAT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.26, C:0.08, G:0.21, T:0.45
Consensus pattern (20 bp):
CATGTGATGCTTAAATGTTT
Found at i:22992942 original size:29 final size:29
Alignment explanation
Indices: 22992900--22993072 Score: 238
Period size: 29 Copynumber: 5.9 Consensus size: 29
22992890 GATGCCTATT
* *
22992900 GAATATAAAAAGGGATGATTTCGACCATC
1 GAATATGAAAAGGGATGGTTTCGACCATC
**
22992929 GAATATGAAAAGGGATGGTGACGACCATC
1 GAATATGAAAAGGGATGGTTTCGACCATC
22992958 GAATATGAAAAGGGATGGTTTCGACCATC
1 GAATATGAAAAGGGATGGTTTCGACCATC
* * *
22992987 GAATATGAAAAGGGATGGCTTCAATCATC
1 GAATATGAAAAGGGATGGTTTCGACCATC
22993016 GAATATGAAAAGGGATGGTTTCGACCATC
1 GAATATGAAAAGGGATGGTTTCGACCATC
* * * *
22993045 TATTAAAGAAAATGGATGGTTTCGACCA
1 GAAT-ATGAAAAGGGATGGTTTCGACCA
22993073 CCGTTTAGCA
Statistics
Matches: 127, Mismatches: 16, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
29 106 0.83
30 21 0.17
ACGTcount: A:0.38, C:0.13, G:0.25, T:0.24
Consensus pattern (29 bp):
GAATATGAAAAGGGATGGTTTCGACCATC
Found at i:23005756 original size:24 final size:24
Alignment explanation
Indices: 23005717--23005796 Score: 99
Period size: 24 Copynumber: 3.3 Consensus size: 24
23005707 CACTCCTCTT
23005717 GAGCTGATGAACAGTAAGCTCT-ATC
1 GAGCTGA-GAACAGTAAGCTCTGA-C
*
23005742 GAGCTGAAAACAGTAAGCTCTGAC
1 GAGCTGAGAACAGTAAGCTCTGAC
* *
23005766 GAGTTGAGAACAGTAAGCTCTTAC
1 GAGCTGAGAACAGTAAGCTCTGAC
*
23005790 AAGCTGA
1 GAGCTGA
23005797 TATATTGGTA
Statistics
Matches: 48, Mismatches: 6, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
24 40 0.83
25 8 0.17
ACGTcount: A:0.35, C:0.19, G:0.25, T:0.21
Consensus pattern (24 bp):
GAGCTGAGAACAGTAAGCTCTGAC
Found at i:23009403 original size:27 final size:27
Alignment explanation
Indices: 23009373--23009528 Score: 145
Period size: 27 Copynumber: 5.7 Consensus size: 27
23009363 TGCTATTCAC
* *
23009373 TCAACTCGCACACTTAGTGCCACGTAA
1 TCAATTCGCACACTTAGTGCCACATAA
* * * *
23009400 TCAAATCGCACCCTTAGTGCTACATAG
1 TCAATTCGCACACTTAGTGCCACATAA
* * **
23009427 TTAGATTCGCACACTTAGTGCCGCATGG
1 TCA-ATTCGCACACTTAGTGCCACATAA
*
23009455 TCAATTCGCACACTTAGTG-CATCATAT
1 TCAATTCGCACACTTAGTGCCA-CATAA
** *
23009482 TCTTTTCGCACACTTAGTGCAACATAA
1 TCAATTCGCACACTTAGTGCCACATAA
23009509 TCGAA-TCGCACACTTAGTGC
1 TC-AATTCGCACACTTAGTGC
23009529 TGTACAATTT
Statistics
Matches: 104, Mismatches: 21, Indels: 8
0.78 0.16 0.06
Matches are distributed among these distances:
26 1 0.01
27 81 0.78
28 22 0.21
ACGTcount: A:0.28, C:0.28, G:0.16, T:0.28
Consensus pattern (27 bp):
TCAATTCGCACACTTAGTGCCACATAA
Found at i:23009444 original size:55 final size:55
Alignment explanation
Indices: 23009378--23009529 Score: 182
Period size: 54 Copynumber: 2.8 Consensus size: 55
23009368 TTCACTCAAC
* *
23009378 TCGCACACTTAGTGCCACGTAATCAAATCGCACCCTTAGTGCTA-CATAGTTAGAT
1 TCGCACACTTAGTGCCACATAATCAAATCGCACACTTAGTGCTATCATA-TTAGAT
* ** * ***
23009433 TCGCACACTTAGTGCCGCATGGTCAATTCGCACACTTAGTGC-ATCATATTCTTT
1 TCGCACACTTAGTGCCACATAATCAAATCGCACACTTAGTGCTATCATATTAGAT
* *
23009487 TCGCACACTTAGTGCAACATAATCGAATCGCACACTTAGTGCT
1 TCGCACACTTAGTGCCACATAATCAAATCGCACACTTAGTGCT
23009530 GTACAATTTA
Statistics
Matches: 80, Mismatches: 15, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
54 40 0.50
55 40 0.50
ACGTcount: A:0.27, C:0.28, G:0.16, T:0.29
Consensus pattern (55 bp):
TCGCACACTTAGTGCCACATAATCAAATCGCACACTTAGTGCTATCATATTAGAT
Found at i:23017467 original size:27 final size:27
Alignment explanation
Indices: 23017437--23017592 Score: 145
Period size: 27 Copynumber: 5.7 Consensus size: 27
23017427 TGCTATTCAC
* *
23017437 TCAACTCGCACACTTAGTGCCACGTAA
1 TCAATTCGCACACTTAGTGCCACATAA
* * * *
23017464 TCAAATCGCACCCTTAGTGCTACATAG
1 TCAATTCGCACACTTAGTGCCACATAA
* * **
23017491 TTAGATTCGCACACTTAGTGCCGCATGG
1 TCA-ATTCGCACACTTAGTGCCACATAA
*
23017519 TCAATTCGCACACTTAGTG-CATCATAT
1 TCAATTCGCACACTTAGTGCCA-CATAA
** *
23017546 TCTTTTCGCACACTTAGTGCAACATAA
1 TCAATTCGCACACTTAGTGCCACATAA
23017573 TCGAA-TCGCACACTTAGTGC
1 TC-AATTCGCACACTTAGTGC
23017593 TGTACAATTT
Statistics
Matches: 104, Mismatches: 21, Indels: 8
0.78 0.16 0.06
Matches are distributed among these distances:
26 1 0.01
27 81 0.78
28 22 0.21
ACGTcount: A:0.28, C:0.28, G:0.16, T:0.28
Consensus pattern (27 bp):
TCAATTCGCACACTTAGTGCCACATAA
Found at i:23017508 original size:55 final size:55
Alignment explanation
Indices: 23017442--23017593 Score: 182
Period size: 54 Copynumber: 2.8 Consensus size: 55
23017432 TTCACTCAAC
* *
23017442 TCGCACACTTAGTGCCACGTAATCAAATCGCACCCTTAGTGCTA-CATAGTTAGAT
1 TCGCACACTTAGTGCCACATAATCAAATCGCACACTTAGTGCTATCATA-TTAGAT
* ** * ***
23017497 TCGCACACTTAGTGCCGCATGGTCAATTCGCACACTTAGTGC-ATCATATTCTTT
1 TCGCACACTTAGTGCCACATAATCAAATCGCACACTTAGTGCTATCATATTAGAT
* *
23017551 TCGCACACTTAGTGCAACATAATCGAATCGCACACTTAGTGCT
1 TCGCACACTTAGTGCCACATAATCAAATCGCACACTTAGTGCT
23017594 GTACAATTTA
Statistics
Matches: 80, Mismatches: 15, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
54 40 0.50
55 40 0.50
ACGTcount: A:0.27, C:0.28, G:0.16, T:0.29
Consensus pattern (55 bp):
TCGCACACTTAGTGCCACATAATCAAATCGCACACTTAGTGCTATCATATTAGAT
Found at i:23023453 original size:53 final size:54
Alignment explanation
Indices: 23023372--23023585 Score: 196
Period size: 53 Copynumber: 4.0 Consensus size: 54
23023362 TTTCCTTTTT
* * * *
23023372 GAACTTACCATTGCCATGTCTTGACATGGTCTTACGTGGTATCTTTCCCTTAT-
1 GAACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCTTTACCTTATA
* * * * * *
23023425 GAACTAACCAATGTCATGCCTTGGCATGGTCTTACATGGGACCTTTATCTTATA
1 GAACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCTTTACCTTATA
* * * * ** * *
23023479 GTAACTCACCAATGTCACGTCTTGACATGGTCTTACATAATTTCCTTACCTTATA
1 G-AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCTTTACCTTATA
* * * * * *
23023534 GAACTTATCAATGCCATTCCTTGGCATGGTCTTACATGTTATCCTTATCTTA
1 GAACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCTTTACCTTA
23023586 CCAAATGCCA
Statistics
Matches: 127, Mismatches: 32, Indels: 3
0.78 0.20 0.02
Matches are distributed among these distances:
53 43 0.34
54 41 0.32
55 43 0.34
ACGTcount: A:0.24, C:0.24, G:0.15, T:0.37
Consensus pattern (54 bp):
GAACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCTTTACCTTATA
Found at i:23023532 original size:55 final size:52
Alignment explanation
Indices: 23023389--23023585 Score: 155
Period size: 55 Copynumber: 3.7 Consensus size: 52
23023379 CCATTGCCAT
* * *
23023389 GTCTTGACATGGTCTTACGTGGTATCTTTCCCTTAT-GAACTAACCAATGTCA
1 GTCTTGACATGGTCTTACAT-GTATCCTTACCTTATAGAACTAACCAATGTCA
* * * * *
23023441 TGCCTTGGCATGGTCTTACATGGGA-CCTTTATCTTATAGTAACTCACCAATGTCA
1 -GTCTTGACATGGTCTTACAT-GTATCC-TTACCTTATAG-AACTAACCAATGTCA
* * * * *
23023496 CGTCTTGACATGGTCTTACATAATTTCCTTACCTTATAGAACTTATCAATGCCA
1 -GTCTTGACATGGTCTTACAT-GTATCCTTACCTTATAGAACTAACCAATGTCA
* * *
23023550 TTCCTTGGCATGGTCTTACATGTTATCCTTATCTTA
1 GT-CTTGACATGGTCTTACATG-TATCCTTACCTTA
23023586 CCAAATGCCA
Statistics
Matches: 114, Mismatches: 24, Indels: 11
0.77 0.16 0.07
Matches are distributed among these distances:
52 1 0.01
53 28 0.25
54 41 0.36
55 42 0.37
56 2 0.02
ACGTcount: A:0.23, C:0.23, G:0.15, T:0.38
Consensus pattern (52 bp):
GTCTTGACATGGTCTTACATGTATCCTTACCTTATAGAACTAACCAATGTCA
Found at i:23023612 original size:47 final size:47
Alignment explanation
Indices: 23023558--23023679 Score: 208
Period size: 47 Copynumber: 2.6 Consensus size: 47
23023548 CATTCCTTGG
*
23023558 CATGGTCTTACATGTTATCCTTATCTTACCAAATGCCATGTTCCAAA
1 CATGGTCTTACATGGTATCCTTATCTTACCAAATGCCATGTTCCAAA
* * *
23023605 CATGGTCTTAAATGGTATCCTTGTCTTACCAAATGTCATGTTCCAAA
1 CATGGTCTTACATGGTATCCTTATCTTACCAAATGCCATGTTCCAAA
23023652 CATGGTCTTACATGGTATCCTTATCTTA
1 CATGGTCTTACATGGTATCCTTATCTTA
23023680 GTGGAAATGC
Statistics
Matches: 69, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
47 69 1.00
ACGTcount: A:0.26, C:0.23, G:0.13, T:0.38
Consensus pattern (47 bp):
CATGGTCTTACATGGTATCCTTATCTTACCAAATGCCATGTTCCAAA
Found at i:23030634 original size:21 final size:21
Alignment explanation
Indices: 23030608--23030649 Score: 84
Period size: 21 Copynumber: 2.0 Consensus size: 21
23030598 TATCGTGTCG
23030608 ATGTCACATCACTTTTACTAA
1 ATGTCACATCACTTTTACTAA
23030629 ATGTCACATCACTTTTACTAA
1 ATGTCACATCACTTTTACTAA
23030650 CGGAATTTTC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.33, C:0.24, G:0.05, T:0.38
Consensus pattern (21 bp):
ATGTCACATCACTTTTACTAA
Found at i:23039563 original size:46 final size:46
Alignment explanation
Indices: 23039476--23039563 Score: 115
Period size: 46 Copynumber: 1.9 Consensus size: 46
23039466 ACATCTCATA
* * *
23039476 GCCGATGCATGTCCCAAACATGTCTTACACTGGCTTACGTCTTGAG
1 GCCGACGCATGTCCCAAACATGTCTTACACTAGCCTACGTCTTGAG
* *
23039522 GCCGACGCATGTCCTAGACATGTCTTACACTAGCACT-CGTCT
1 GCCGACGCATGTCCCAAACATGTCTTACACTAGC-CTACGTCT
23039564 CAATGCAAAT
Statistics
Matches: 36, Mismatches: 5, Indels: 2
0.84 0.12 0.05
Matches are distributed among these distances:
46 35 0.97
47 1 0.03
ACGTcount: A:0.22, C:0.31, G:0.20, T:0.27
Consensus pattern (46 bp):
GCCGACGCATGTCCCAAACATGTCTTACACTAGCCTACGTCTTGAG
Found at i:23047183 original size:44 final size:45
Alignment explanation
Indices: 23047123--23047234 Score: 127
Period size: 46 Copynumber: 2.5 Consensus size: 45
23047113 CCGATGCCAA
* * * *
23047123 GTCCCAGACATGGTCTTACACTGACATA-TCTCGAAACTGATGGAT
1 GTCCTAGACAT-GTCTTACACTGACATACTCTCGAAACCGACGCAT
* * **
23047168 GTCCTAGACATGTCTTACACTGGCTTACGTCTCGAGGCCGACGCAT
1 GTCCTAGACATGTCTTACACTGACATAC-TCTCGAAACCGACGCAT
23047214 GTCCTAGACATGTCTTACACT
1 GTCCTAGACATGTCTTACACT
23047235 AACACTCATC
Statistics
Matches: 57, Mismatches: 8, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
44 14 0.25
45 10 0.18
46 33 0.58
ACGTcount: A:0.24, C:0.28, G:0.21, T:0.28
Consensus pattern (45 bp):
GTCCTAGACATGTCTTACACTGACATACTCTCGAAACCGACGCAT
Found at i:23056878 original size:42 final size:43
Alignment explanation
Indices: 23056778--23056926 Score: 144
Period size: 42 Copynumber: 3.5 Consensus size: 43
23056768 TGAAATATCA
* * *
23056778 TGTAAGACCGTGTCTGGGACACAGGCTTTGATTTGAGATTTACG
1 TGTAAGACCATGTCTGGGACACAGGCATCGATTT-AGATTTACG
23056822 TGTAAGACCATGTCTGGGACATCA-GCATCGTATTT-GATTT-CG
1 TGTAAGACCATGTCTGGGACA-CAGGCATCG-ATTTAGATTTACG
* * * * *
23056864 TGTAAGACCCTGTCTGGGATAGAGGCATCGATATT-GAATTACA
1 TGTAAGACCATGTCTGGGACACAGGCATCGAT-TTAGATTTACG
* *
23056907 TGTAAGACCACGTTTGGGAC
1 TGTAAGACCATGTCTGGGAC
23056927 GTTGGTATTG
Statistics
Matches: 88, Mismatches: 12, Indels: 11
0.79 0.11 0.10
Matches are distributed among these distances:
41 3 0.03
42 33 0.38
43 22 0.25
44 24 0.27
45 6 0.07
ACGTcount: A:0.26, C:0.17, G:0.27, T:0.30
Consensus pattern (43 bp):
TGTAAGACCATGTCTGGGACACAGGCATCGATTTAGATTTACG
Found at i:23058188 original size:48 final size:48
Alignment explanation
Indices: 23058092--23058189 Score: 169
Period size: 48 Copynumber: 2.0 Consensus size: 48
23058082 CTATCTGGTA
*
23058092 ATGCCTCATAACCTTAATTCTATGCCGGTTACGAGTTAGGGGCGTTAT
1 ATGCCTCATAACCTTAATTCTATGCCGGTTACGAGTTAGGGGCATTAT
* *
23058140 ATGCCTCATAACTTTAATTCTATGCCGGTTACGAGTTAGGGGTATTAT
1 ATGCCTCATAACCTTAATTCTATGCCGGTTACGAGTTAGGGGCATTAT
23058188 AT
1 AT
23058190 TTTAATTTGT
Statistics
Matches: 47, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
48 47 1.00
ACGTcount: A:0.24, C:0.18, G:0.21, T:0.36
Consensus pattern (48 bp):
ATGCCTCATAACCTTAATTCTATGCCGGTTACGAGTTAGGGGCATTAT
Found at i:23063733 original size:25 final size:25
Alignment explanation
Indices: 23063699--23063754 Score: 112
Period size: 25 Copynumber: 2.2 Consensus size: 25
23063689 CCTTGTGATG
23063699 CCATTTGGCTTGACTAATGCTCCTT
1 CCATTTGGCTTGACTAATGCTCCTT
23063724 CCATTTGGCTTGACTAATGCTCCTT
1 CCATTTGGCTTGACTAATGCTCCTT
23063749 CCATTT
1 CCATTT
23063755 AAAGCTAGCT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 31 1.00
ACGTcount: A:0.16, C:0.29, G:0.14, T:0.41
Consensus pattern (25 bp):
CCATTTGGCTTGACTAATGCTCCTT
Found at i:23074514 original size:17 final size:18
Alignment explanation
Indices: 23074492--23074537 Score: 71
Period size: 17 Copynumber: 2.7 Consensus size: 18
23074482 AGCTATATTC
23074492 TTGGTGAATTTTGC-ATA
1 TTGGTGAATTTTGCTATA
23074509 TTGGTGAATTTT-CTATA
1 TTGGTGAATTTTGCTATA
23074526 TTGGTG-ATTTTG
1 TTGGTGAATTTTG
23074538 TGAAAAATAG
Statistics
Matches: 27, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
16 6 0.22
17 21 0.78
ACGTcount: A:0.20, C:0.04, G:0.24, T:0.52
Consensus pattern (18 bp):
TTGGTGAATTTTGCTATA
Found at i:23077728 original size:27 final size:27
Alignment explanation
Indices: 23077692--23077798 Score: 142
Period size: 27 Copynumber: 4.0 Consensus size: 27
23077682 GTCGTTAAGA
* *
23077692 CCCCGATTTGTAAAATTATTGAAATAC
1 CCCCAATTTGTAAAATTATCGAAATAC
* * *
23077719 CCCCGATTTGTAAAATTACCGAAACAC
1 CCCCAATTTGTAAAATTATCGAAATAC
*
23077746 CCCTAATTTGTAAAATTATCGAAATAC
1 CCCCAATTTGTAAAATTATCGAAATAC
* *
23077773 CCCTAATTTGTAAAATTATCAAAATA
1 CCCCAATTTGTAAAATTATCGAAATA
23077799 TCCTCGGGTT
Statistics
Matches: 72, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 72 1.00
ACGTcount: A:0.40, C:0.21, G:0.08, T:0.31
Consensus pattern (27 bp):
CCCCAATTTGTAAAATTATCGAAATAC
Found at i:23077849 original size:27 final size:27
Alignment explanation
Indices: 23077819--23077952 Score: 151
Period size: 27 Copynumber: 5.0 Consensus size: 27
23077809 ATAAATTACT
*
23077819 GTAATACCCCTATAGGGTAAAATGACC
1 GTAATACCCCTGTAGGGTAAAATGACC
* * *
23077846 GTAATATCCCTGTAGGGTAAAATAACT
1 GTAATACCCCTGTAGGGTAAAATGACC
* * * *
23077873 GTAATGCTCCTGTAGAGTAAAATGACT
1 GTAATACCCCTGTAGGGTAAAATGACC
* *
23077900 GTAATGCCCCTGTATGGTAAAATGACC
1 GTAATACCCCTGTAGGGTAAAATGACC
* **
23077927 GTAATACCCCTATTTGGTAAAATGAC
1 GTAATACCCCTGTAGGGTAAAATGAC
23077953 GATTATGCCC
Statistics
Matches: 91, Mismatches: 16, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 91 1.00
ACGTcount: A:0.34, C:0.19, G:0.19, T:0.28
Consensus pattern (27 bp):
GTAATACCCCTGTAGGGTAAAATGACC
Found at i:23078368 original size:28 final size:27
Alignment explanation
Indices: 23078337--23078399 Score: 72
Period size: 28 Copynumber: 2.3 Consensus size: 27
23078327 GTACTGATGT
* *
23078337 TGTATTGGGCTTAGGCCCACACTGTTAC
1 TGTATTGGGCTAAAGCCCACACTGTT-C
* *
23078365 TGTATAGGGCTAAAGCCCAGACTGTTC
1 TGTATTGGGCTAAAGCCCACACTGTTC
23078392 TGTTATTG
1 TG-TATTG
23078400 TATAGGGCTA
Statistics
Matches: 29, Mismatches: 5, Indels: 2
0.81 0.14 0.06
Matches are distributed among these distances:
27 3 0.10
28 26 0.90
ACGTcount: A:0.21, C:0.21, G:0.25, T:0.33
Consensus pattern (27 bp):
TGTATTGGGCTAAAGCCCACACTGTTC
Found at i:23078395 original size:33 final size:33
Alignment explanation
Indices: 23078358--23078423 Score: 114
Period size: 33 Copynumber: 2.0 Consensus size: 33
23078348 TAGGCCCACA
23078358 CTGTTACTGTATAGGGCTAAAGCCCAGACTGTT
1 CTGTTACTGTATAGGGCTAAAGCCCAGACTGTT
* *
23078391 CTGTTATTGTATAGGGCTAAGGCCCAGACTGTT
1 CTGTTACTGTATAGGGCTAAAGCCCAGACTGTT
23078424 ACTGCATGCA
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
33 31 1.00
ACGTcount: A:0.23, C:0.20, G:0.26, T:0.32
Consensus pattern (33 bp):
CTGTTACTGTATAGGGCTAAAGCCCAGACTGTT
Found at i:23080956 original size:26 final size:28
Alignment explanation
Indices: 23080902--23080956 Score: 69
Period size: 26 Copynumber: 2.0 Consensus size: 28
23080892 GTAAGTTCAC
* *
23080902 ACACTTAGTGCTTAATAATCATACTCGT
1 ACACTTAGTGCTAAATAATCATAATCGT
*
23080930 ACACTTAGTG-TAAAT-CTCATAATCGT
1 ACACTTAGTGCTAAATAATCATAATCGT
23080956 A
1 A
23080957 AATATTTATA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
26 10 0.42
27 4 0.17
28 10 0.42
ACGTcount: A:0.35, C:0.20, G:0.11, T:0.35
Consensus pattern (28 bp):
ACACTTAGTGCTAAATAATCATAATCGT
Found at i:23083897 original size:13 final size:13
Alignment explanation
Indices: 23083865--23083893 Score: 51
Period size: 12 Copynumber: 2.3 Consensus size: 13
23083855 ACAATATCTC
23083865 TTTTCTTTTTTTA
1 TTTTCTTTTTTTA
23083878 TTTTC-TTTTTTA
1 TTTTCTTTTTTTA
23083890 TTTT
1 TTTT
23083894 TCTTCTTTTG
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 11 0.69
13 5 0.31
ACGTcount: A:0.07, C:0.07, G:0.00, T:0.86
Consensus pattern (13 bp):
TTTTCTTTTTTTA
Found at i:23089255 original size:48 final size:48
Alignment explanation
Indices: 23089184--23089468 Score: 313
Period size: 48 Copynumber: 5.9 Consensus size: 48
23089174 ACATTTGGAT
* *
23089184 GATATGTGTGCCAGTGTAAGACCATGTTTGGGACATGGCATCGGCCAC
1 GATATGAGAGCCAGTGTAAGACCATGTTTGGGACATGGCATCGGCCAC
* * *
23089232 GATATGAGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGGCGAT
1 GATATGAGAGCCAGTGTAAGACCATGTTTGGGACATGGCATCGGCCAC
* * * * *
23089280 GTTGTGAGAGCCAGTGTAAGACCATGTCTAGGACATGGTATCGGCCA-
1 GATATGAGAGCCAGTGTAAGACCATGTTTGGGACATGGCATCGGCCAC
* * * *
23089327 TATTATGAGAGCCAGTGTAAGATCATGTCTGGGACATGGCATCGG-CATT
1 GA-TATGAGAGCCAGTGTAAGACCATGTTTGGGACATGGCATCGGCCA-C
* * * * * *
23089376 GAGATGAGAGCTAGTGTAAGACCGTGCTTGGGACATGGCATCGACCTC
1 GATATGAGAGCCAGTGTAAGACCATGTTTGGGACATGGCATCGGCCAC
* * * * *
23089424 AACATGTGAGCCAATGTAAGACCATGTTTGGAACATGGCATCGGC
1 GATATGAGAGCCAGTGTAAGACCATGTTTGGGACATGGCATCGGC
23089469 AATTCGCCCT
Statistics
Matches: 196, Mismatches: 37, Indels: 8
0.81 0.15 0.03
Matches are distributed among these distances:
47 2 0.01
48 192 0.98
49 2 0.01
ACGTcount: A:0.27, C:0.19, G:0.31, T:0.24
Consensus pattern (48 bp):
GATATGAGAGCCAGTGTAAGACCATGTTTGGGACATGGCATCGGCCAC
Found at i:23095591 original size:29 final size:30
Alignment explanation
Indices: 23095521--23095623 Score: 97
Period size: 29 Copynumber: 3.6 Consensus size: 30
23095511 ACCCCTACAT
* *
23095521 ACATGCATATAGCCCA-CTAGGCCCAA-TC
1 ACATTCATATGGCCCATCTAGGCCCAATTC
** * *
23095549 TTATTCAAATGGCCCATCT-GGCCCAGTTC
1 ACATTCATATGGCCCATCTAGGCCCAATTC
* *
23095578 ATATTCTTATGGCCCA-CTAGGCCCAATTC
1 ACATTCATATGGCCCATCTAGGCCCAATTC
*
23095607 ACCTTCATATGGCCCAT
1 ACATTCATATGGCCCAT
23095624 TAAGCCAAAA
Statistics
Matches: 58, Mismatches: 13, Indels: 6
0.75 0.17 0.08
Matches are distributed among these distances:
28 19 0.33
29 39 0.67
ACGTcount: A:0.25, C:0.33, G:0.15, T:0.27
Consensus pattern (30 bp):
ACATTCATATGGCCCATCTAGGCCCAATTC
Found at i:23099362 original size:29 final size:30
Alignment explanation
Indices: 23099330--23099420 Score: 80
Period size: 29 Copynumber: 3.1 Consensus size: 30
23099320 GCCCACTACT
* *
23099330 TATTCAAATGGCCCATCT-GGCCCAGTTCA
1 TATTCATATGGCCCATCTAGGCCCAATTCA
* *
23099359 TATTCTTATAGCCCA-CTAGGCCCAATTCA
1 TATTCATATGGCCCATCTAGGCCCAATTCA
** ** *
23099388 CCTTCATATGGCCCAT-TAGTTCCAAATCA
1 TATTCATATGGCCCATCTAGGCCCAATTCA
23099417 TATT
1 TATT
23099421 ATACTCATGC
Statistics
Matches: 47, Mismatches: 13, Indels: 4
0.73 0.20 0.06
Matches are distributed among these distances:
28 2 0.04
29 45 0.96
ACGTcount: A:0.26, C:0.30, G:0.12, T:0.32
Consensus pattern (30 bp):
TATTCATATGGCCCATCTAGGCCCAATTCA
Found at i:23100964 original size:16 final size:16
Alignment explanation
Indices: 23100943--23100974 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
23100933 AAGTTCAAGA
23100943 TTTCGAGATTTTTGGG
1 TTTCGAGATTTTTGGG
23100959 TTTCGAGATTTTTGGG
1 TTTCGAGATTTTTGGG
23100975 GCATTACATA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.12, C:0.06, G:0.31, T:0.50
Consensus pattern (16 bp):
TTTCGAGATTTTTGGG
Found at i:23106924 original size:48 final size:48
Alignment explanation
Indices: 23106853--23107178 Score: 328
Period size: 48 Copynumber: 6.9 Consensus size: 48
23106843 GACATTTGGG
* *
23106853 TGATATGTGTGCCAGTGTAAGACCATGTTTGGGACATGGCATCGGCCA
1 TGATATGAGAGCCAGTGTAAGACCATGTTTGGGACATGGCATCGGCCA
* **
23106901 TGATATGAGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGGTGA
1 TGATATGAGAGCCAGTGTAAGACCATGTTTGGGACATGGCATCGGCCA
* * * *
23106949 TGTTGTGAGAGCCAGTGTAAGACCATGTCTGGGACATGGTATCGG-CA
1 TGATATGAGAGCCAGTGTAAGACCATGTTTGGGACATGGCATCGGCCA
* * * **
23106996 TTGATATGTGCGCCAGTGTAAAACCATGCCTGGGACATGGCATCGGCCA
1 -TGATATGAGAGCCAGTGTAAGACCATGTTTGGGACATGGCATCGGCCA
* * * *
23107045 -CATTATGAGAACTAGTGTAAGACCATGTTTGGGACATGGCATTGG-CA
1 TGA-TATGAGAGCCAGTGTAAGACCATGTTTGGGACATGGCATCGGCCA
* * * * * *
23107092 TTGAGATGAGAGCTAGTGTAAGACCATGTTTGAGACATCGTCCTCGACC-
1 -TGATATGAGAGCCAGTGTAAGACCATGTTTGGGACAT-GGCATCGGCCA
*
23107141 TG---TGAGA--CAGTGTAAGACCATGTTTGGAACATGGCATC
1 TGATATGAGAGCCAGTGTAAGACCATGTTTGGGACATGGCATC
23107179 AGCAATTCAC
Statistics
Matches: 231, Mismatches: 40, Indels: 20
0.79 0.14 0.07
Matches are distributed among these distances:
42 4 0.02
43 22 0.10
45 5 0.02
47 4 0.02
48 188 0.81
49 7 0.03
50 1 0.00
ACGTcount: A:0.26, C:0.18, G:0.30, T:0.26
Consensus pattern (48 bp):
TGATATGAGAGCCAGTGTAAGACCATGTTTGGGACATGGCATCGGCCA
Found at i:23107113 original size:144 final size:144
Alignment explanation
Indices: 23106853--23107129 Score: 380
Period size: 144 Copynumber: 1.9 Consensus size: 144
23106843 GACATTTGGG
* * ** * *
23106853 TGATATGTGTGCCAGTGTAAGACCATGTTTGGGACATGGCATCGGCCATGATATGAGAGCCAGTG
1 TGATATGTGCGCCAGTGTAAAACCATGCCTGGGACATGGCATCGGCCATCATATGAGAACCAGTG
* * *
23106918 TAAGACCATGTTTGGAACATGGCATCGGTGATGTTGTGAGAGCCAGTGTAAGACCATGTCTGGGA
66 TAAGACCATGTTTGGAACATGGCATCGGTCATGTAGTGAGAGCCAGTGTAAGACCATGTCTGAGA
23106983 CATGGTATCGGCAT
131 CATGGTATCGGCAT
*
23106997 TGATATGTGCGCCAGTGTAAAACCATGCCTGGGACATGGCATCGGCCA-CATTATGAGAACTAGT
1 TGATATGTGCGCCAGTGTAAAACCATGCCTGGGACATGGCATCGGCCATCA-TATGAGAACCAGT
* * * *
23107061 GTAAGACCATGTTTGGGACATGGCATTGG-CAT-TGAGATGAGAGCTAGTGTAAGACCATGTTTG
65 GTAAGACCATGTTTGGAACATGGCATCGGTCATGT-AG-TGAGAGCCAGTGTAAGACCATGTCTG
23107124 AGACAT
128 AGACAT
23107130 CGTCCTCGAC
Statistics
Matches: 116, Mismatches: 14, Indels: 6
0.85 0.10 0.04
Matches are distributed among these distances:
142 1 0.01
143 4 0.03
144 111 0.96
ACGTcount: A:0.27, C:0.17, G:0.30, T:0.26
Consensus pattern (144 bp):
TGATATGTGCGCCAGTGTAAAACCATGCCTGGGACATGGCATCGGCCATCATATGAGAACCAGTG
TAAGACCATGTTTGGAACATGGCATCGGTCATGTAGTGAGAGCCAGTGTAAGACCATGTCTGAGA
CATGGTATCGGCAT
Found at i:23120535 original size:47 final size:47
Alignment explanation
Indices: 23120483--23120727 Score: 391
Period size: 47 Copynumber: 5.1 Consensus size: 47
23120473 CTCGGCCCTG
*
23120483 TCACATTCATCACATCGGCCATTAGGCCTCATCACATATATACACTT
1 TCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTT
*
23120530 TCACATTCATCACATCAGCCATTAGGCCTTATCACATATATATACACTT
1 TCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATACACTT
*
23120579 TCACATTCACCACATCGGCCATTAGGCCTTATCACATATATATACACTT
1 TCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATACACTT
* *
23120628 TCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACACTT
1 TCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTT
* *
23120675 TCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACAT
1 TCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTT
23120722 TCACAT
1 TCACAT
23120728 CACAATTATC
Statistics
Matches: 185, Mismatches: 11, Indels: 4
0.93 0.05 0.02
Matches are distributed among these distances:
47 94 0.51
49 91 0.49
ACGTcount: A:0.31, C:0.30, G:0.08, T:0.32
Consensus pattern (47 bp):
TCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTT
Found at i:23120593 original size:49 final size:49
Alignment explanation
Indices: 23120483--23120727 Score: 403
Period size: 49 Copynumber: 5.1 Consensus size: 49
23120473 CTCGGCCCTG
*
23120483 TCACATTCATCACATCGGCCATTAGGCCTCATCAC--ATATATACACTT
1 TCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTT
*
23120530 TCACATTCATCACATCAGCCATTAGGCCTTATCACATATATATACACTT
1 TCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTT
*
23120579 TCACATTCACCACATCGGCCATTAGGCCTTATCACATATATATACACTT
1 TCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTT
* *
23120628 TCACATTCATCACATTGGCCATTCGGCCTTATCAC--ATATATACACTT
1 TCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTT
23120675 TCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACA--T
1 TCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTT
23120722 TCACAT
1 TCACAT
23120728 CACAATTATC
Statistics
Matches: 185, Mismatches: 9, Indels: 8
0.92 0.04 0.04
Matches are distributed among these distances:
47 85 0.46
49 100 0.54
ACGTcount: A:0.31, C:0.30, G:0.08, T:0.32
Consensus pattern (49 bp):
TCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTT
Found at i:23120618 original size:96 final size:94
Alignment explanation
Indices: 23120483--23120727 Score: 391
Period size: 96 Copynumber: 2.6 Consensus size: 94
23120473 CTCGGCCCTG
*
23120483 TCACATTCATCACATCGGCCATTAGGCCTCATCACATATATACACTTTCACATTCATCACATCAG
1 TCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCAG
23120548 CCATTAGGCCTTATCACATATATATACACTT
66 CCATTAGGCCTTATCAC--ATATATACACTT
* *
23120579 TCACATTCACCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATT
1 TCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATACACTTTCACATTCATCACATC
* *
23120644 GGCCATTCGGCCTTATCACATATATACACTT
64 AGCCATTAGGCCTTATCACATATATACACTT
* *
23120675 TCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACATTCACAT
1 TCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACAT
23120728 CACAATTATC
Statistics
Matches: 139, Mismatches: 8, Indels: 6
0.91 0.05 0.04
Matches are distributed among these distances:
94 16 0.12
96 79 0.57
98 44 0.32
ACGTcount: A:0.31, C:0.30, G:0.08, T:0.32
Consensus pattern (94 bp):
TCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCAG
CCATTAGGCCTTATCACATATATACACTT
Found at i:23123401 original size:47 final size:47
Alignment explanation
Indices: 23123335--23123748 Score: 792
Period size: 47 Copynumber: 8.7 Consensus size: 47
23123325 GAAATGATAG
23123335 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
23123382 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
23123429 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
23123476 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
23123523 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
23123570 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
23123617 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
23123664 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGA
*
23123713 TAGGGCCTAATGGCCGATGTGATGAATGTGATAAGT
1 TAAGGCCTAATGGCCGATGTGATGAATGTGA-AAGT
23123749 CCCGAAGGGC
Statistics
Matches: 363, Mismatches: 1, Indels: 3
0.99 0.00 0.01
Matches are distributed among these distances:
47 318 0.88
49 41 0.11
50 4 0.01
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.30
Consensus pattern (47 bp):
TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
Found at i:23123920 original size:36 final size:37
Alignment explanation
Indices: 23123865--23123942 Score: 122
Period size: 36 Copynumber: 2.1 Consensus size: 37
23123855 CCGAGCTCTA
* *
23123865 AAGACCCGATGACTACGTGTGG-GATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
*
23123901 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
23123938 AAGAC
1 AAGAC
23123943 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 3, Indels: 1
0.90 0.07 0.02
Matches are distributed among these distances:
36 20 0.53
37 18 0.47
ACGTcount: A:0.24, C:0.19, G:0.31, T:0.26
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:23125840 original size:43 final size:43
Alignment explanation
Indices: 23125792--23125894 Score: 206
Period size: 43 Copynumber: 2.4 Consensus size: 43
23125782 TTGGTTTTCA
23125792 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
1 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
23125835 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
1 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
23125878 GCACTAAGTGTGCGGGC
1 GCACTAAGTGTGCGGGC
23125895 TTGAAATGCA
Statistics
Matches: 60, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 60 1.00
ACGTcount: A:0.22, C:0.16, G:0.36, T:0.26
Consensus pattern (43 bp):
GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
Found at i:23125911 original size:29 final size:29
Alignment explanation
Indices: 23125876--23125978 Score: 163
Period size: 29 Copynumber: 3.6 Consensus size: 29
23125866 GTTGTGAGAT
* * *
23125876 TGGCACTAAGTGTGCGGGCTTGAAA-TGCA
1 TGGCACTAAGTGTGCGAG-TTTAAAGTACA
23125905 TGGCACTAAGTGTGCGAGTTTAAAGTACA
1 TGGCACTAAGTGTGCGAGTTTAAAGTACA
23125934 TGGCACTAAGTGTGCGAGTTTAAAGTACA
1 TGGCACTAAGTGTGCGAGTTTAAAGTACA
23125963 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
23125979 TGGTTGATTA
Statistics
Matches: 70, Mismatches: 3, Indels: 2
0.93 0.04 0.03
Matches are distributed among these distances:
28 5 0.07
29 65 0.93
ACGTcount: A:0.27, C:0.16, G:0.31, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGTTTAAAGTACA
Found at i:23126408 original size:40 final size:40
Alignment explanation
Indices: 23126289--23126472 Score: 183
Period size: 40 Copynumber: 4.8 Consensus size: 40
23126279 TCGAATGATG
* *
23126289 TCCGGGCTAAGTCCCGAAG-GC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCT-AGTGA-TATA
* *
23126329 TCCGGACTAAGAT-CCGAAG-GCATT--TGCTAGT-A-CTA
1 TCCGGGCTAAG-TCCCGAAGAGCATTCGTGCTAGTGATATA
* *
23126364 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTA
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATA
*
23126404 TCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATATA
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATA
* *
23126444 TCCGTGCTAA-ACCC-AAGAGCA-TCGTGCTA
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTA
23126473 AGGGCTAGGT
Statistics
Matches: 126, Mismatches: 10, Indels: 19
0.81 0.06 0.12
Matches are distributed among these distances:
34 1 0.01
35 18 0.14
36 5 0.04
37 9 0.07
38 17 0.13
39 7 0.06
40 66 0.52
41 3 0.02
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATA
Found at i:23126414 original size:75 final size:77
Alignment explanation
Indices: 23126289--23126437 Score: 189
Period size: 75 Copynumber: 1.9 Consensus size: 77
23126279 TCGAATGATG
**
23126289 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAG-GCATT
1 TCCGGGCTAAGTCCCGAAGGCTTCATGCTAAGTGACCATATCCGGACTAAGATCCGAAGAGCATT
23126353 -TGCTAGTACTA
66 CTGCTAGTACTA
** * *
23126364 TCCGGGCTAAGTCCCGAAGAGCATTCATGCT-AGTGA-TGTATCCGGGCTAAGTTCCGAAGAGCA
1 TCCGGGCTAAGTCCCGAAG-GC-TTCATGCTAAGTGACCATATCCGGACTAAGATCCGAAGAGCA
23126427 TTCGTGCTAGT
64 TTC-TGCTAGT
23126438 GATATATCCG
Statistics
Matches: 63, Mismatches: 6, Indels: 7
0.83 0.08 0.09
Matches are distributed among these distances:
75 38 0.60
76 12 0.19
77 6 0.10
78 7 0.11
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.26
Consensus pattern (77 bp):
TCCGGGCTAAGTCCCGAAGGCTTCATGCTAAGTGACCATATCCGGACTAAGATCCGAAGAGCATT
CTGCTAGTACTA
Found at i:23129970 original size:47 final size:47
Alignment explanation
Indices: 23129904--23130296 Score: 701
Period size: 47 Copynumber: 8.4 Consensus size: 47
23129894 GAAATGATAG
23129904 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
23129951 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
23129998 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
23130045 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
23130092 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
23130139 TAAGGCCTAAT-GCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
23130185 TAAGGCCTAATGGCCGATGTGA-GAATGTGAAAGTGTATATAATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TAT-ATATGTGA
23130234 T-AGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA-ATA-GTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
23130278 -AGGGCCTAATGGCC-ATGTG
1 TAAGGCCTAATGGCCGATGTG
23130297 TAAATGATGT
Statistics
Matches: 339, Mismatches: 1, Indels: 16
0.95 0.00 0.04
Matches are distributed among these distances:
43 5 0.01
44 16 0.05
45 3 0.01
46 59 0.17
47 211 0.62
48 23 0.07
49 22 0.06
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.29
Consensus pattern (47 bp):
TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
Found at i:23130481 original size:37 final size:37
Alignment explanation
Indices: 23130425--23130503 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
23130415 CCGAGCTCTA
* * *
23130425 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
*
23130462 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
23130499 AAGAC
1 AAGAC
23130504 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.24, C:0.19, G:0.32, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:23135093 original size:13 final size:13
Alignment explanation
Indices: 23135075--23135115 Score: 73
Period size: 13 Copynumber: 3.2 Consensus size: 13
23135065 GCTCAGCAGG
23135075 GACACGCCCGTGT
1 GACACGCCCGTGT
23135088 GACACGCCCGTGT
1 GACACGCCCGTGT
*
23135101 GACACACCCGTGT
1 GACACGCCCGTGT
23135114 GA
1 GA
23135116 ATCGTGCTTC
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
13 27 1.00
ACGTcount: A:0.20, C:0.37, G:0.29, T:0.15
Consensus pattern (13 bp):
GACACGCCCGTGT
Found at i:23148450 original size:24 final size:24
Alignment explanation
Indices: 23148423--23148497 Score: 63
Period size: 24 Copynumber: 3.4 Consensus size: 24
23148413 CGTTGAGTGG
*
23148423 TCCGGGTTCGTGATATAGGTGGCA
1 TCCGAGTTCGTGATATAGGTGGCA
* *
23148447 TCCGAGCTCGT--T-GA-GTGG--
1 TCCGAGTTCGTGATATAGGTGGCA
* *
23148465 TCCGGGTTCATGATATAGGTGGCA
1 TCCGAGTTCGTGATATAGGTGGCA
23148489 TCCGAGTTC
1 TCCGAGTTC
23148498 ATAATGGATG
Statistics
Matches: 37, Mismatches: 8, Indels: 12
0.65 0.14 0.21
Matches are distributed among these distances:
18 8 0.22
20 5 0.14
21 2 0.05
22 5 0.14
24 17 0.46
ACGTcount: A:0.16, C:0.20, G:0.35, T:0.29
Consensus pattern (24 bp):
TCCGAGTTCGTGATATAGGTGGCA
Found at i:23148472 original size:42 final size:42
Alignment explanation
Indices: 23148413--23148494 Score: 155
Period size: 42 Copynumber: 2.0 Consensus size: 42
23148403 AGTCTGAACC
*
23148413 CGTTGAGTGGTCCGGGTTCGTGATATAGGTGGCATCCGAGCT
1 CGTTGAGTGGTCCGGGTTCATGATATAGGTGGCATCCGAGCT
23148455 CGTTGAGTGGTCCGGGTTCATGATATAGGTGGCATCCGAG
1 CGTTGAGTGGTCCGGGTTCATGATATAGGTGGCATCCGAG
23148495 TTCATAATGG
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
42 39 1.00
ACGTcount: A:0.16, C:0.18, G:0.38, T:0.28
Consensus pattern (42 bp):
CGTTGAGTGGTCCGGGTTCATGATATAGGTGGCATCCGAGCT
Found at i:23158289 original size:46 final size:46
Alignment explanation
Indices: 23158235--23158446 Score: 212
Period size: 48 Copynumber: 4.5 Consensus size: 46
23158225 TGTGAGCTAA
*
23158235 TGTAAGACATGTCAGGGACATGCATCAGCCACAATATGAGAGCCAG
1 TGTAAGACATGTCAGGGACATGCATCGGCCACAATATGAGAGCCAG
* * * * *
23158281 TGTAAGACATGTCTGGGACATACATCGGCCTTAAAATATTTA-AGCCAA
1 TGTAAGACATGTCAGGGACATGCATCGGCC--ACAATA-TGAGAGCCAG
*
23158329 TGTAAGACATGTCAAGGACATGCATCGGCCACAATATGAGAGCCAG
1 TGTAAGACATGTCAGGGACATGCATCGGCCACAATATGAGAGCCAG
*** * * * * *
23158375 TGTAAGACATGTTTCGGACATGCATCGACCTCGAAATATTTA-AACCAA
1 TGTAAGACATGTCAGGGACATGCATCGGCCAC--AATA-TGAGAGCCAG
*
23158423 TGTAAGACATGTCTGGGACATGCA
1 TGTAAGACATGTCAGGGACATGCA
23158447 CCGACGTTGA
Statistics
Matches: 137, Mismatches: 22, Indels: 12
0.80 0.13 0.07
Matches are distributed among these distances:
45 2 0.01
46 64 0.47
48 67 0.49
49 4 0.03
ACGTcount: A:0.34, C:0.20, G:0.23, T:0.23
Consensus pattern (46 bp):
TGTAAGACATGTCAGGGACATGCATCGGCCACAATATGAGAGCCAG
Found at i:23158338 original size:48 final size:46
Alignment explanation
Indices: 23158222--23158446 Score: 220
Period size: 46 Copynumber: 4.8 Consensus size: 46
23158212 ATATTAGGAG
* * * * *
23158222 ATATGTGAGCTAATGTAAGACATGTCAGGGACATGCATCAGCCACA
1 ATATGAGAGCCAATGTAAGACATGTCTGGGACATGCATCGGCCAAA
* *
23158268 ATATGAGAGCCAGTGTAAGACATGTCTGGGACATACATCGGCCTTAAA
1 ATATGAGAGCCAATGTAAGACATGTCTGGGACATGCATCGGCC--AAA
* ** *
23158316 ATATTTA-AGCCAATGTAAGACATGTCAAGGACATGCATCGGCCACA
1 ATA-TGAGAGCCAATGTAAGACATGTCTGGGACATGCATCGGCCAAA
* * * * *
23158362 ATATGAGAGCCAGTGTAAGACATGTTTCGGACATGCATCGACCTCGAA
1 ATATGAGAGCCAATGTAAGACATGTCTGGGACATGCATCG-GC-CAAA
* *
23158410 ATATTTA-AACCAATGTAAGACATGTCTGGGACATGCA
1 ATA-TGAGAGCCAATGTAAGACATGTCTGGGACATGCA
23158447 CCGACGTTGA
Statistics
Matches: 146, Mismatches: 26, Indels: 12
0.79 0.14 0.07
Matches are distributed among these distances:
45 2 0.01
46 71 0.49
47 1 0.01
48 68 0.47
49 4 0.03
ACGTcount: A:0.35, C:0.20, G:0.23, T:0.23
Consensus pattern (46 bp):
ATATGAGAGCCAATGTAAGACATGTCTGGGACATGCATCGGCCAAA
Found at i:23158394 original size:94 final size:94
Alignment explanation
Indices: 23158233--23158446 Score: 338
Period size: 94 Copynumber: 2.3 Consensus size: 94
23158223 TATGTGAGCT
*
23158233 AATGTAAGACATGTCAGGGACATGCATCAGCCACAATATGAGAGCCAGTGTAAGACATGTCTGGG
1 AATGTAAGACATGTCAGGGACATGCATCAGCCACAATATGAGAGCCAGTGTAAGACATGTCTCGG
* * *
23158298 ACATACATCGGCCTTAAAATATTTAAGCC
66 ACATACATCGACCTCAAAATATTTAAACC
* * *
23158327 AATGTAAGACATGTCAAGGACATGCATCGGCCACAATATGAGAGCCAGTGTAAGACATGTTTCGG
1 AATGTAAGACATGTCAGGGACATGCATCAGCCACAATATGAGAGCCAGTGTAAGACATGTCTCGG
* *
23158392 ACATGCATCGACCTCGAAATATTTAAACC
66 ACATACATCGACCTCAAAATATTTAAACC
*
23158421 AATGTAAGACATGTCTGGGACATGCA
1 AATGTAAGACATGTCAGGGACATGCA
23158447 CCGACGTTGA
Statistics
Matches: 109, Mismatches: 11, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
94 109 1.00
ACGTcount: A:0.35, C:0.20, G:0.22, T:0.22
Consensus pattern (94 bp):
AATGTAAGACATGTCAGGGACATGCATCAGCCACAATATGAGAGCCAGTGTAAGACATGTCTCGG
ACATACATCGACCTCAAAATATTTAAACC
Found at i:23158465 original size:94 final size:94
Alignment explanation
Indices: 23158233--23158495 Score: 285
Period size: 94 Copynumber: 2.8 Consensus size: 94
23158223 TATGTGAGCT
* * * **
23158233 AATGTAAGACATGTCAGGGACATGCATC-AGCCACAATATGAGAGCCAGTGTAAGACATGTCTGG
1 AATGTAAGACATGTCAAGGACATGCACCGA-CCACAAGACAAGAGCCAGTGTAAGACATGTCTGG
* * * *
23158297 GACATACATCGGCCTTAAAATATTTAAGCC
65 GACATGCATCGACCTCAAAATATTTAAACC
* * * ** * *
23158327 AATGTAAGACATGTCAAGGACATGCATCGGCCACAATATGAGAGCCAGTGTAAGACATGTTTCGG
1 AATGTAAGACATGTCAAGGACATGCACCGACCACAAGACAAGAGCCAGTGTAAGACATGTCTGGG
*
23158392 ACATGCATCGACCTCGAAATATTTAAACC
66 ACATGCATCGACCTCAAAATATTTAAACC
** **** *
23158421 AATGTAAGACATGTCTGGGACATGCACCGACGTTGAGACAAGAGCTAGTGTAAGACATGTCTGGG
1 AATGTAAGACATGTCAAGGACATGCACCGACCACAAGACAAGAGCCAGTGTAAGACATGTCTGGG
*
23158486 ATATGCATCG
66 ACATGCATCG
23158496 GCCTTGAGAT
Statistics
Matches: 144, Mismatches: 24, Indels: 2
0.85 0.14 0.01
Matches are distributed among these distances:
94 144 1.00
ACGTcount: A:0.34, C:0.20, G:0.24, T:0.22
Consensus pattern (94 bp):
AATGTAAGACATGTCAAGGACATGCACCGACCACAAGACAAGAGCCAGTGTAAGACATGTCTGGG
ACATGCATCGACCTCAAAATATTTAAACC
Found at i:23158482 original size:46 final size:48
Alignment explanation
Indices: 23158423--23158538 Score: 146
Period size: 46 Copynumber: 2.5 Consensus size: 48
23158413 TTTAAACCAA
* *
23158423 TGTAAGACATGTCTGGGACATGCACCGACGTTGAGACA-A-GAGCTAG
1 TGTAAGACATGTCTGGGACATGCACCGACCTTGAGACAGACAAGCTAG
* * * *
23158469 TGTAAGACATGTCTGGGATATGCATCGGCCTTGAGATAGACAAGCTAG
1 TGTAAGACATGTCTGGGACATGCACCGACCTTGAGACAGACAAGCTAG
* *
23158517 TGTAAGACCTGTCTAGGACATG
1 TGTAAGACATGTCTGGGACATG
23158539 GCGTCAGCTT
Statistics
Matches: 59, Mismatches: 9, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
46 33 0.56
47 1 0.02
48 25 0.42
ACGTcount: A:0.29, C:0.18, G:0.29, T:0.23
Consensus pattern (48 bp):
TGTAAGACATGTCTGGGACATGCACCGACCTTGAGACAGACAAGCTAG
Found at i:23158622 original size:49 final size:49
Alignment explanation
Indices: 23158558--23158689 Score: 153
Period size: 49 Copynumber: 2.7 Consensus size: 49
23158548 TGTTGTGTGT
* *
23158558 CAGTGTAAGAACTGTCTGGGACATGGCATC-GACAC-CGA-TAGATGAGAGC
1 CAGTGTAAGACCTGTCTGGGACATGGCATCAG-C-CTC-ACTAGATGAAAGC
* *
23158607 CAGTGTAAGACCTGTCTGGGACATGGCTTCAGCCTCACTATATGAAAGC
1 CAGTGTAAGACCTGTCTGGGACATGGCATCAGCCTCACTAGATGAAAGC
* *
23158656 CGGTGTAAGACCATGTCTGGGACATGGCGTCAGC
1 CAGTGTAAGACC-TGTCTGGGACATGGCATCAGC
23158690 ATCTTAATCC
Statistics
Matches: 73, Mismatches: 6, Indels: 7
0.85 0.07 0.08
Matches are distributed among these distances:
48 2 0.03
49 50 0.68
50 21 0.29
ACGTcount: A:0.27, C:0.23, G:0.30, T:0.21
Consensus pattern (49 bp):
CAGTGTAAGACCTGTCTGGGACATGGCATCAGCCTCACTAGATGAAAGC
Found at i:23162757 original size:21 final size:21
Alignment explanation
Indices: 23162732--23162779 Score: 87
Period size: 21 Copynumber: 2.3 Consensus size: 21
23162722 TGGTTCAACA
23162732 GGTAATAAAAGGAAATGAAAT
1 GGTAATAAAAGGAAATGAAAT
*
23162753 GGTAAGAAAAGGAAATGAAAT
1 GGTAATAAAAGGAAATGAAAT
23162774 GGTAAT
1 GGTAAT
23162780 TATTCAAAGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.54, C:0.00, G:0.27, T:0.19
Consensus pattern (21 bp):
GGTAATAAAAGGAAATGAAAT
Found at i:23165852 original size:46 final size:46
Alignment explanation
Indices: 23165802--23165970 Score: 186
Period size: 46 Copynumber: 3.7 Consensus size: 46
23165792 TGGTTCAGCA
23165802 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * *
23165848 TCCGAACTCGTTGAGTTGAGTTCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
23165893 CATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
23165941 -CTCGAGCTCGTTGAGTTGAGTCTGAGTTCA
1 TC-CGAACTCGTTGAGTTGAGTCCGAGTTCA
23165971 ACTAGGGGCG
Statistics
Matches: 103, Mismatches: 10, Indels: 20
0.77 0.08 0.15
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 4 0.04
46 55 0.53
47 27 0.26
48 3 0.03
50 5 0.05
51 2 0.02
ACGTcount: A:0.21, C:0.19, G:0.30, T:0.31
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:23165958 original size:93 final size:93
Alignment explanation
Indices: 23165799--23165969 Score: 292
Period size: 93 Copynumber: 1.8 Consensus size: 93
23165789 GGATGGTTCA
23165799 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
23165864 TGAGT-TCGAGTTCGTGAGATGTAACTAG
66 TGAGTCT-GAGTTCGTGAGATGTAACTAG
* *
23165892 GCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG-CTCGAGCTCGTTGAG
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTC-CGAACTCGTTGAG
23165956 TTGAGTCTGAGTTC
65 TTGAGTCTGAGTTC
23165970 AACTAGGGGC
Statistics
Matches: 74, Mismatches: 2, Indels: 4
0.93 0.03 0.05
Matches are distributed among these distances:
92 1 0.01
93 72 0.97
94 1 0.01
ACGTcount: A:0.20, C:0.19, G:0.30, T:0.30
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
TGAGTCTGAGTTCGTGAGATGTAACTAG
Found at i:23173783 original size:25 final size:25
Alignment explanation
Indices: 23173685--23173810 Score: 114
Period size: 25 Copynumber: 5.0 Consensus size: 25
23173675 GAATAACAAC
* *
23173685 TCACCACAACAGG-TTTCCAGATAAT
1 TCACCACAA-AGGTTTTCCAAAGAAT
23173710 TCACCACAAAGGTTTTCCAAATG-AT
1 TCACCACAAAGGTTTTCCAAA-GAAT
*
23173735 ACACCAC-AAGTGTTTTCCAAAGAAT
1 TCACCACAAAG-GTTTTCCAAAGAAT
* * *
23173760 TTACCACAAAGGCTTTCCATAGAAT
1 TCACCACAAAGGTTTTCCAAAGAAT
** * *
23173785 TTGCCATAAAGGTTTTCCAGAGAAT
1 TCACCACAAAGGTTTTCCAAAGAAT
23173810 T
1 T
23173811 ACAGTCCTGG
Statistics
Matches: 85, Mismatches: 11, Indels: 10
0.80 0.10 0.09
Matches are distributed among these distances:
24 7 0.08
25 75 0.88
26 3 0.04
ACGTcount: A:0.36, C:0.23, G:0.13, T:0.28
Consensus pattern (25 bp):
TCACCACAAAGGTTTTCCAAAGAAT
Found at i:23174705 original size:85 final size:85
Alignment explanation
Indices: 23174557--23174722 Score: 269
Period size: 85 Copynumber: 2.0 Consensus size: 85
23174547 GTAGCAAATG
* * *
23174557 CTTAAAAGATCATAAGATTTCAATTAAAATCCCCATTACAGACATTTTACTAAAATTTTAACTAC
1 CTTAAAAGATCATAACATGTCAATTAAAATCCCCATTACAGACATTTTACTAAAATTTCAACTAC
*
23174622 ATGTGACCCCCATGCAACTA
66 ATGCGACCCCCATGCAACTA
* * *
23174642 CTTAAAATATCATAACATGTCCATTATAATCCCCATTACAGACATTTTACTAAAATTTCAACTAC
1 CTTAAAAGATCATAACATGTCAATTAAAATCCCCATTACAGACATTTTACTAAAATTTCAACTAC
23174707 ATGCGACCCCCATGCA
66 ATGCGACCCCCATGCA
23174723 GGGCCTTCCT
Statistics
Matches: 74, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
85 74 1.00
ACGTcount: A:0.39, C:0.25, G:0.07, T:0.30
Consensus pattern (85 bp):
CTTAAAAGATCATAACATGTCAATTAAAATCCCCATTACAGACATTTTACTAAAATTTCAACTAC
ATGCGACCCCCATGCAACTA
Found at i:23185896 original size:6 final size:6
Alignment explanation
Indices: 23185878--23185964 Score: 88
Period size: 6 Copynumber: 14.3 Consensus size: 6
23185868 AAGAAACATT
* * *
23185878 ATCAGA A-CTAGA ATCAGA ATCAGA ATTAGA ATCACA ATCAAA ATCAGA
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA
* *
23185926 ATCAGA ATCAGT ATCAGGTA AT-AGA ATCAAA ATCAGA AT
1 ATCAGA ATCAGA ATCA-G-A ATCAGA ATCAGA ATCAGA AT
23185965 GGGAATGCAA
Statistics
Matches: 67, Mismatches: 9, Indels: 10
0.78 0.10 0.12
Matches are distributed among these distances:
5 4 0.06
6 58 0.87
7 3 0.04
8 2 0.03
ACGTcount: A:0.51, C:0.15, G:0.14, T:0.21
Consensus pattern (6 bp):
ATCAGA
Found at i:23186397 original size:27 final size:27
Alignment explanation
Indices: 23186367--23186523 Score: 217
Period size: 27 Copynumber: 5.9 Consensus size: 27
23186357 GGCGCAAAAT
* * *
23186367 GGTAATTTTACCCCACAAGGGTATCTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* * *
23186394 GGTAATTCCACCCTACAGGGGTATTTT
1 GGTAATTCTACCCTACAAGGGTATTTC
*
23186421 AGTAATTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
23186448 GGTAATTCTACCCTACAA-GGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
23186474 GGTAATTCTACCCTATAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
23186501 GGTAATTCTACCCTACAGGGGTA
1 GGTAATTCTACCCTACAAGGGTA
23186524 ATTTTACAAA
Statistics
Matches: 115, Mismatches: 14, Indels: 2
0.88 0.11 0.02
Matches are distributed among these distances:
26 24 0.21
27 91 0.79
ACGTcount: A:0.25, C:0.22, G:0.20, T:0.32
Consensus pattern (27 bp):
GGTAATTCTACCCTACAAGGGTATTTC
Found at i:23186496 original size:53 final size:54
Alignment explanation
Indices: 23186367--23186523 Score: 217
Period size: 53 Copynumber: 2.9 Consensus size: 54
23186357 GGCGCAAAAT
* * * * * *
23186367 GGTAATTTTACCCCACAAGGGTATCTCGGTAATTCCACCCTACAGGGGTATTTT
1 GGTAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGAGGTATTTC
*
23186421 AGTAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACA-AGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGAGGTATTTC
* * *
23186474 GGTAATTCTACCCTATAGGGGTATTTCGGTAATTCTACCCTACAGGGGTA
1 GGTAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGAGGTA
23186524 ATTTTACAAA
Statistics
Matches: 91, Mismatches: 11, Indels: 2
0.88 0.11 0.02
Matches are distributed among these distances:
53 48 0.53
54 43 0.47
ACGTcount: A:0.25, C:0.22, G:0.20, T:0.32
Consensus pattern (54 bp):
GGTAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGAGGTATTTC
Found at i:23186506 original size:80 final size:81
Alignment explanation
Indices: 23186367--23186523 Score: 235
Period size: 80 Copynumber: 2.0 Consensus size: 81
23186357 GGCGCAAAAT
* *
23186367 GGTAATTTTACCCCACAAGGGTATCTCGGTAATTCCACCCTACAGGGGTATTTTAGTAATTCTAC
1 GGTAATTCTACCCCACAAGGGTATCTCGGTAATTCCACCCTACAGGGGTATTTCAGTAATTCTAC
23186432 CCTACAAGGGTATTTC
66 CCTACAAGGGTATTTC
* * * * *
23186448 GGTAATTCTACCCTACAA-GGTATTTCGGTAATTCTACCCTATAGGGGTATTTCGGTAATTCTAC
1 GGTAATTCTACCCCACAAGGGTATCTCGGTAATTCCACCCTACAGGGGTATTTCAGTAATTCTAC
*
23186512 CCTACAGGGGTA
66 CCTACAAGGGTA
23186524 ATTTTACAAA
Statistics
Matches: 68, Mismatches: 8, Indels: 1
0.88 0.10 0.01
Matches are distributed among these distances:
80 52 0.76
81 16 0.24
ACGTcount: A:0.25, C:0.22, G:0.20, T:0.32
Consensus pattern (81 bp):
GGTAATTCTACCCCACAAGGGTATCTCGGTAATTCCACCCTACAGGGGTATTTCAGTAATTCTAC
CCTACAAGGGTATTTC
Found at i:23186550 original size:27 final size:27
Alignment explanation
Indices: 23186520--23186614 Score: 93
Period size: 27 Copynumber: 3.5 Consensus size: 27
23186510 ACCCTACAGG
*
23186520 GGTAATTTTACAAACCAGGGGTATTTT
1 GGTAATTTTATAAACCAGGGGTATTTT
** **
23186547 GGTAATTTTATTGA-TTGAGGGTATTTT
1 GGTAATTTTATAAACCAG-GGGTATTTT
* *
23186574 GGTAATTTTGTAAACCAAGGGTATTTT
1 GGTAATTTTATAAACCAGGGGTATTTT
* *
23186601 AGTAATTTTGTAAA
1 GGTAATTTTATAAA
23186615 TCGAGGGTAA
Statistics
Matches: 54, Mismatches: 12, Indels: 4
0.77 0.17 0.06
Matches are distributed among these distances:
26 1 0.02
27 53 0.98
ACGTcount: A:0.29, C:0.05, G:0.22, T:0.43
Consensus pattern (27 bp):
GGTAATTTTATAAACCAGGGGTATTTT
Found at i:23186606 original size:54 final size:54
Alignment explanation
Indices: 23186520--23186742 Score: 180
Period size: 54 Copynumber: 4.1 Consensus size: 54
23186510 ACCCTACAGG
** * * ** * ***
23186520 GGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTATTGATTGAGGGTATTTT
1 GGTAATTTTGTAAACCAAGGGTATTTTAGTAATTTTATAAATCGAGGGTAAAAT
*
23186574 GGTAATTTTGTAAACCAAGGGTATTTTAGTAATTTTGTAAATCGAGGGTAAAAT
1 GGTAATTTTGTAAACCAAGGGTATTTTAGTAATTTTATAAATCGAGGGTAAAAT
* * *** * * *
23186628 GGTAATTTTGTAAATCGAGGGTAAAATGGTAATTCTGTAAATCGAGGGTAAAAT
1 GGTAATTTTGTAAACCAAGGGTATTTTAGTAATTTTATAAATCGAGGGTAAAAT
* * * ** * *
23186682 GGTAATTCTGTAAATCGAGGGTA--AAACGATAATTTTGTAAATCGAGAGTAAAAT
1 GGTAATTTTGTAAACCAAGGGTATTTTA-G-TAATTTTATAAATCGAGGGTAAAAT
23186736 GGTAATT
1 GGTAATT
23186743 CTATCTTATT
Statistics
Matches: 144, Mismatches: 23, Indels: 4
0.84 0.13 0.02
Matches are distributed among these distances:
52 1 0.01
53 1 0.01
54 142 0.99
ACGTcount: A:0.35, C:0.06, G:0.24, T:0.36
Consensus pattern (54 bp):
GGTAATTTTGTAAACCAAGGGTATTTTAGTAATTTTATAAATCGAGGGTAAAAT
Found at i:23186621 original size:27 final size:27
Alignment explanation
Indices: 23186573--23186742 Score: 241
Period size: 27 Copynumber: 6.3 Consensus size: 27
23186563 GAGGGTATTT
* * ***
23186573 TGGTAATTTTGTAAACCAAGGGTATTT
1 TGGTAATTTTGTAAATCGAGGGTAAAA
*
23186600 TAGTAATTTTGTAAATCGAGGGTAAAA
1 TGGTAATTTTGTAAATCGAGGGTAAAA
23186627 TGGTAATTTTGTAAATCGAGGGTAAAA
1 TGGTAATTTTGTAAATCGAGGGTAAAA
*
23186654 TGGTAATTCTGTAAATCGAGGGTAAAA
1 TGGTAATTTTGTAAATCGAGGGTAAAA
*
23186681 TGGTAATTCTGTAAATCGAGGGTAAAA
1 TGGTAATTTTGTAAATCGAGGGTAAAA
* * *
23186708 CGATAATTTTGTAAATCGAGAGTAAAA
1 TGGTAATTTTGTAAATCGAGGGTAAAA
23186735 TGGTAATT
1 TGGTAATT
23186743 CTATCTTATT
Statistics
Matches: 129, Mismatches: 14, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 129 1.00
ACGTcount: A:0.37, C:0.06, G:0.24, T:0.34
Consensus pattern (27 bp):
TGGTAATTTTGTAAATCGAGGGTAAAA
Found at i:23186779 original size:27 final size:27
Alignment explanation
Indices: 23186749--23186842 Score: 111
Period size: 27 Copynumber: 3.5 Consensus size: 27
23186739 AATTCTATCT
*
23186749 TATTTCGGTAATTTTACAAATTGAGGA
1 TATTTCGGTAATTTTACAAATTGAGGG
* *
23186776 TATTTGGGTAATTTTATAAATTG-GGG
1 TATTTCGGTAATTTTACAAATTGAGGG
* *
23186802 TACTTT-GGTAATTTTACAAGTCGAGGG
1 TA-TTTCGGTAATTTTACAAATTGAGGG
*
23186829 TATTTCAGTAATTT
1 TATTTCGGTAATTT
23186843 GGTAAACTAA
Statistics
Matches: 57, Mismatches: 7, Indels: 6
0.81 0.10 0.09
Matches are distributed among these distances:
26 21 0.37
27 36 0.63
ACGTcount: A:0.29, C:0.06, G:0.21, T:0.44
Consensus pattern (27 bp):
TATTTCGGTAATTTTACAAATTGAGGG
Found at i:23188477 original size:35 final size:35
Alignment explanation
Indices: 23188437--23188506 Score: 122
Period size: 35 Copynumber: 2.0 Consensus size: 35
23188427 ACGATTCTAC
* *
23188437 CACGTAATATCGCTTGGTATTAGTTAAACATTAGA
1 CACGTAATACCGCTTAGTATTAGTTAAACATTAGA
23188472 CACGTAATACCGCTTAGTATTAGTTAAACATTAGA
1 CACGTAATACCGCTTAGTATTAGTTAAACATTAGA
23188507 AAACCAATGA
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
35 33 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.33
Consensus pattern (35 bp):
CACGTAATACCGCTTAGTATTAGTTAAACATTAGA
Found at i:23203293 original size:20 final size:20
Alignment explanation
Indices: 23203236--23203293 Score: 98
Period size: 20 Copynumber: 2.9 Consensus size: 20
23203226 AAGACGATAA
*
23203236 ACCATTCCATTTACTTACTT
1 ACCATTCCATTTACTTATTT
23203256 ACCATTCCATTTACTTATTT
1 ACCATTCCATTTACTTATTT
*
23203276 TCCATTCCATTTACTTAT
1 ACCATTCCATTTACTTAT
23203294 CATGAGCTTA
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 36 1.00
ACGTcount: A:0.24, C:0.28, G:0.00, T:0.48
Consensus pattern (20 bp):
ACCATTCCATTTACTTATTT
Found at i:23211470 original size:41 final size:40
Alignment explanation
Indices: 23211402--23211651 Score: 311
Period size: 41 Copynumber: 6.1 Consensus size: 40
23211392 GCAAAAATTT
* *
23211402 TAAAATACAGAGCAATAGCGGCGTTTTTGGTAAAACGCCGC
1 TAAAA-ACAGAGCATTAGCGGCGCTTTTGGTAAAACGCCGC
** * * **
23211443 TAAAAACAGAGCAACAGTGGCGTTTTTTACTAAAACGCCGC
1 TAAAAACAGAGCATTAGCGGCG-CTTTTGGTAAAACGCCGC
* *
23211484 TAAAAACAGAGCATTAGCGGCACTTTTGGTAAAACACCGC
1 TAAAAACAGAGCATTAGCGGCGCTTTTGGTAAAACGCCGC
23211524 TAAAAACCAGAGCATTAGCGGCGCTTTTGGTAAAACGCCGC
1 TAAAAA-CAGAGCATTAGCGGCGCTTTTGGTAAAACGCCGC
* *
23211565 TAAAAACCAGAGCATTAGCGGCGCTTTTGGTGAAACGCCAC
1 TAAAAA-CAGAGCATTAGCGGCGCTTTTGGTAAAACGCCGC
* * **
23211606 TAAAAACCAAAGCATTAGCGGTGCTTTTAATAAAACGCCGC
1 TAAAAA-CAGAGCATTAGCGGCGCTTTTGGTAAAACGCCGC
23211647 TAAAA
1 TAAAA
23211652 GTCATATAAC
Statistics
Matches: 185, Mismatches: 22, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
40 35 0.19
41 150 0.81
ACGTcount: A:0.36, C:0.22, G:0.21, T:0.21
Consensus pattern (40 bp):
TAAAAACAGAGCATTAGCGGCGCTTTTGGTAAAACGCCGC
Found at i:23211833 original size:14 final size:14
Alignment explanation
Indices: 23211814--23211853 Score: 53
Period size: 14 Copynumber: 2.9 Consensus size: 14
23211804 TATCATTACA
23211814 GTTTAAGGTTTATG
1 GTTTAAGGTTTATG
* *
23211828 GTTTAAGATATATG
1 GTTTAAGGTTTATG
*
23211842 GTTTAGGGTTTA
1 GTTTAAGGTTTA
23211854 AGCAGGTTTA
Statistics
Matches: 21, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.25, C:0.00, G:0.28, T:0.47
Consensus pattern (14 bp):
GTTTAAGGTTTATG
Found at i:23211882 original size:49 final size:46
Alignment explanation
Indices: 23211824--23211920 Score: 140
Period size: 49 Copynumber: 2.0 Consensus size: 46
23211814 GTTTAAGGTT
** *
23211824 TATGGTTTAAGATATATGGTTTAGGGTTTAAGCAGGTTTATGAGTTAAC
1 TATGGTTTAAGATATACAGTTTAGGGTTTAA--A-GTTTAAGAGTTAAC
23211873 TATGGTTTAAGATATACAGTTTAGGGTTTAAAGTTTAAGAGTTAAC
1 TATGGTTTAAGATATACAGTTTAGGGTTTAAAGTTTAAGAGTTAAC
23211919 TA
1 TA
23211921 GTATTTGAAG
Statistics
Matches: 45, Mismatches: 3, Indels: 3
0.88 0.06 0.06
Matches are distributed among these distances:
46 15 0.33
47 1 0.02
49 29 0.64
ACGTcount: A:0.32, C:0.04, G:0.24, T:0.40
Consensus pattern (46 bp):
TATGGTTTAAGATATACAGTTTAGGGTTTAAAGTTTAAGAGTTAAC
Found at i:23212485 original size:14 final size:14
Alignment explanation
Indices: 23212466--23212510 Score: 81
Period size: 14 Copynumber: 3.2 Consensus size: 14
23212456 TTAATTATCA
23212466 TTATAGTTTAGGGT
1 TTATAGTTTAGGGT
23212480 TTATAGTTTAGGGT
1 TTATAGTTTAGGGT
*
23212494 GTATAGTTTAGGGT
1 TTATAGTTTAGGGT
23212508 TTA
1 TTA
23212511 ATTTTTAGTG
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 29 1.00
ACGTcount: A:0.22, C:0.00, G:0.29, T:0.49
Consensus pattern (14 bp):
TTATAGTTTAGGGT
Found at i:23217557 original size:19 final size:19
Alignment explanation
Indices: 23217534--23217580 Score: 51
Period size: 19 Copynumber: 2.5 Consensus size: 19
23217524 ATTTAATCTA
*
23217534 ATTTTTATTATTTA-TTTT
1 ATTTTTATTATATATTTTT
* *
23217552 AGTTTTGATTCTATATTTTT
1 A-TTTTTATTATATATTTTT
23217572 ATTTTTATT
1 ATTTTTATT
23217581 TTAATATTTA
Statistics
Matches: 23, Mismatches: 4, Indels: 3
0.77 0.13 0.10
Matches are distributed among these distances:
18 1 0.04
19 17 0.74
20 5 0.22
ACGTcount: A:0.21, C:0.02, G:0.04, T:0.72
Consensus pattern (19 bp):
ATTTTTATTATATATTTTT
Found at i:23233627 original size:31 final size:31
Alignment explanation
Indices: 23233582--23233663 Score: 101
Period size: 31 Copynumber: 2.6 Consensus size: 31
23233572 TTGGATGTTC
* *
23233582 AACCTTGCATCTTCCATCTTTCATCTCCCTT
1 AACCTTCCACCTTCCATCTTTCATCTCCCTT
* * *
23233613 AACCTTCCACCTTCCACCTTTCATCTTCTTT
1 AACCTTCCACCTTCCATCTTTCATCTCCCTT
**
23233644 AACCTTTAACCTTCCATCTT
1 AACCTTCCACCTTCCATCTT
23233664 CTTTATGTTG
Statistics
Matches: 43, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
31 43 1.00
ACGTcount: A:0.18, C:0.39, G:0.01, T:0.41
Consensus pattern (31 bp):
AACCTTCCACCTTCCATCTTTCATCTCCCTT
Found at i:23233648 original size:24 final size:24
Alignment explanation
Indices: 23233621--23233668 Score: 69
Period size: 24 Copynumber: 2.0 Consensus size: 24
23233611 TTAACCTTCC
* *
23233621 ACCTTCCACCTTTCATCTTCTTTA
1 ACCTTCAACCTTCCATCTTCTTTA
*
23233645 ACCTTTAACCTTCCATCTTCTTTA
1 ACCTTCAACCTTCCATCTTCTTTA
23233669 TGTTGGGAAA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.19, C:0.35, G:0.00, T:0.46
Consensus pattern (24 bp):
ACCTTCAACCTTCCATCTTCTTTA
Found at i:23236105 original size:42 final size:42
Alignment explanation
Indices: 23236006--23236229 Score: 162
Period size: 42 Copynumber: 5.2 Consensus size: 42
23235996 TCTGGGATAT
* * * *
23236006 GACATGGCATCGGTATGTGATTTCATGTAAGACCATATCTGG
1 GACATGGCATCGATATGAGATTTCGTGTAAGACCATGTCTGG
* ** * *
23236048 GATATGGTGTTGATATAAGATTTCGTGTAAGACCATGTCTGG
1 GACATGGCATCGATATGAGATTTCGTGTAAGACCATGTCTGG
* ** *
23236090 GACATGGCATCGATATGAGGTCCCGTGTAAAACCATGTCTGG
1 GACATGGCATCGATATGAGATTTCGTGTAAGACCATGTCTGG
* * * **
23236132 GACATGGCATCGCCACTGACATTAGACTTCGTATAAGACCAAATCTGG
1 GACATGGCATCG--A-T---ATGAGATTTCGTGTAAGACCATGTCTGG
* * ** * *
23236180 GATATGGCATCGGTATGTAGA-CCCATGTAAGACCATGTCGGG
1 GACATGGCATCGATATG-AGATTTCGTGTAAGACCATGTCTGG
23236222 GACATGGC
1 GACATGGC
23236230 TTTGGCATTC
Statistics
Matches: 137, Mismatches: 38, Indels: 14
0.72 0.20 0.07
Matches are distributed among these distances:
42 101 0.74
43 3 0.02
44 1 0.01
45 2 0.01
48 30 0.22
ACGTcount: A:0.27, C:0.19, G:0.27, T:0.27
Consensus pattern (42 bp):
GACATGGCATCGATATGAGATTTCGTGTAAGACCATGTCTGG
Found at i:23238542 original size:19 final size:19
Alignment explanation
Indices: 23238518--23238571 Score: 60
Period size: 19 Copynumber: 2.9 Consensus size: 19
23238508 ATTTCAAAAA
*
23238518 TAATATTATTTTAATAGTT
1 TAATATTATATTAATAGTT
23238537 TAATATTA-ATTAA-A-TT
1 TAATATTATATTAATAGTT
*
23238553 TAATACTTATCTTAATAGT
1 TAATA-TTATATTAATAGT
23238572 ATTTTTTTAA
Statistics
Matches: 29, Mismatches: 2, Indels: 7
0.76 0.05 0.18
Matches are distributed among these distances:
16 7 0.24
17 4 0.14
18 8 0.28
19 9 0.31
20 1 0.03
ACGTcount: A:0.41, C:0.04, G:0.04, T:0.52
Consensus pattern (19 bp):
TAATATTATATTAATAGTT
Found at i:23238627 original size:23 final size:23
Alignment explanation
Indices: 23238597--23238640 Score: 70
Period size: 23 Copynumber: 1.9 Consensus size: 23
23238587 TATTAAAGTG
*
23238597 ATTATTTTAATATTAAATATTCT
1 ATTATTTTAAGATTAAATATTCT
*
23238620 ATTATTTTAAGATTTAATATT
1 ATTATTTTAAGATTAAATATT
23238641 AAAGTGATTA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.39, C:0.02, G:0.02, T:0.57
Consensus pattern (23 bp):
ATTATTTTAAGATTAAATATTCT
Found at i:23240413 original size:24 final size:24
Alignment explanation
Indices: 23240384--23240467 Score: 116
Period size: 24 Copynumber: 3.5 Consensus size: 24
23240374 TGGATGTTCA
23240384 ACCTTTCATCTTCCTCAACCTTTC
1 ACCTTTCATCTTCCTCAACCTTTC
* *
23240408 ACCTTTCGTCTTCCTCACCCTTTC
1 ACCTTTCATCTTCCTCAACCTTTC
*
23240432 ACCTTTCATCTTCCTTAA-CTCTTC
1 ACCTTTCATCTTCCTCAACCT-TTC
*
23240456 ACATTTCATCTT
1 ACCTTTCATCTT
23240468 ATTGTAACCT
Statistics
Matches: 53, Mismatches: 6, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
23 2 0.04
24 51 0.96
ACGTcount: A:0.15, C:0.39, G:0.01, T:0.44
Consensus pattern (24 bp):
ACCTTTCATCTTCCTCAACCTTTC
Found at i:23242942 original size:16 final size:15
Alignment explanation
Indices: 23242918--23242947 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
23242908 AACTATTTTA
23242918 TTACAAATTTCACTC
1 TTACAAATTTCACTC
23242933 TTACATAATTTCACT
1 TTACA-AATTTCACT
23242948 TACTCCATTC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.33, C:0.23, G:0.00, T:0.43
Consensus pattern (15 bp):
TTACAAATTTCACTC
Found at i:23243272 original size:50 final size:50
Alignment explanation
Indices: 23243145--23243591 Score: 400
Period size: 50 Copynumber: 8.9 Consensus size: 50
23243135 GTAATCGAAG
* * **
23243145 CTATCTGGTACACATAGTAGCCTACACTTAGTACTACACATACGACC-AA
1 CTATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACATGTGACCTAA
*
23243194 CAAT-TCGGTACACGTAGTAGCCTGCACTTAGTACTACACACT-TGACCTAA
1 CTATCT-GGTACACGTAGTAGCCTGCACTTAGTACTACACA-TGTGACCTAA
* * * * *
23243244 CCATCTGATACACGTAGTAGCCTACACTTAGTACTACACACGTGA-TTGAA
1 CTATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACATGTGACCT-AA
* * * * *
23243294 GTTGTCGGGTACGCATAGTAGCCTGCACTTAGTACTACACATGTGACCTAA
1 -CTATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACATGTGACCTAA
* * *
23243345 CTATCTGGTACACGTAGTAGCTTGAACTTAGTACTACACACGTGACCTAA
1 CTATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACATGTGACCTAA
* * * * * *
23243395 CCATTTGATATACGTAGTAGCCTACACTTAGTACTACACATGTGA-TTGAA
1 CTATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACATGTGACCT-AA
* * * * * * * * *
23243445 GTTGTCGGGTACGCATAGAAGACTGCACTTAGTACTATACATGCGACCTAA
1 -CTATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACATGTGACCTAA
* *
23243496 CTATCTGGTACACGTAGTAGCCTGCATTTAGTACTACACACGTGACCTAAAA
1 CTATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACATGTGACCT--AA
* *** * * * *
23243548 CCATCTTAAACACATAGTAGCTTGCACATGGTACTACACATGTG
1 CTATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACATGTG
23243592 TTCTCACAAT
Statistics
Matches: 313, Mismatches: 72, Indels: 23
0.77 0.18 0.06
Matches are distributed among these distances:
48 1 0.00
49 41 0.13
50 161 0.51
51 72 0.23
52 38 0.12
ACGTcount: A:0.31, C:0.25, G:0.18, T:0.27
Consensus pattern (50 bp):
CTATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACATGTGACCTAA
Found at i:23243396 original size:151 final size:151
Alignment explanation
Indices: 23243151--23243587 Score: 635
Period size: 151 Copynumber: 2.9 Consensus size: 151
23243141 GAAGCTATCT
* * * *
23243151 GGTACACATAGTAGCCTACACTTAGTACTACACATACGACC-AACAAT-TCGGTACACGTAGTAG
1 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTAACTATCT-GGTACACGTAGTAG
*
23243214 CCTGCACTTAGTACTACACACTTGACCTAACCATCTGATACACGTAGTAGCCTACACTTAGTACT
65 CCTGCACTTAGTACTACACACGTGACCTAACCATCTGATACACGTAGTAGCCTACACTTAGTACT
23243279 ACACACGTGATTGAAGTTGTCG
130 ACACACGTGATTGAAGTTGTCG
*
23243301 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGTGACCTAACTATCTGGTACACGTAGTAGC
1 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTAACTATCTGGTACACGTAGTAGC
* * * *
23243366 TTGAACTTAGTACTACACACGTGACCTAACCATTTGATATACGTAGTAGCCTACACTTAGTACTA
66 CTGCACTTAGTACTACACACGTGACCTAACCATCTGATACACGTAGTAGCCTACACTTAGTACTA
*
23243431 CACATGTGATTGAAGTTGTCG
131 CACACGTGATTGAAGTTGTCG
* * *
23243452 GGTACGCATAGAAGACTGCACTTAGTACTATACATGCGACCTAACTATCTGGTACACGTAGTAGC
1 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTAACTATCTGGTACACGTAGTAGC
* * * * * * * *
23243517 CTGCATTTAGTACTACACACGTGACCTAAAACCATCTTAAACACATAGTAGCTTGCACATGGTAC
66 CTGCACTTAGTACTACACACGTGACCT--AACCATCTGATACACGTAGTAGCCTACACTTAGTAC
23243582 TACACA
129 TACACA
23243588 TGTGTTCTCA
Statistics
Matches: 256, Mismatches: 27, Indels: 5
0.89 0.09 0.02
Matches are distributed among these distances:
150 37 0.14
151 185 0.72
152 1 0.00
153 33 0.13
ACGTcount: A:0.31, C:0.25, G:0.18, T:0.27
Consensus pattern (151 bp):
GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTAACTATCTGGTACACGTAGTAGC
CTGCACTTAGTACTACACACGTGACCTAACCATCTGATACACGTAGTAGCCTACACTTAGTACTA
CACACGTGATTGAAGTTGTCG
Found at i:23243456 original size:101 final size:100
Alignment explanation
Indices: 23243145--23243545 Score: 305
Period size: 101 Copynumber: 4.0 Consensus size: 100
23243135 GTAATCGAAG
* * * ** * *
23243145 CTATCTGGTACACATAGTAGCCT-ACACTTAGTACTACACATACGACC-AACAAT-TCGGTACAC
1 CTATCGGGTACACATAGAAGACTGA-ACTTAGTACTACACACGCGACCTAACCATCT-GATACAC
23243207 GTAGTAGCCTGCACTTAGTACTACACACT-TGACCTAA
64 GTAGTAGCCTGCACTTAGTACTACACA-TGTGACCTAA
* * * * * * * * *** * * *
23243244 CCATCTGATACACGTAGTAGCCT-ACACTTAGTACTACACACGTGA-TTGAAGTTGTCGGGTACG
1 CTATCGGGTACACATAGAAGACTGA-ACTTAGTACTACACACGCGACCT-AA-CCATCTGATACA
*
23243307 CATAGTAGCCTGCACTTAGTACTACACATGTGACCTAA
63 CGTAGTAGCCTGCACTTAGTACTACACATGTGACCTAA
* * * * * *
23243345 CTATCTGGTACACGTAGTAG-CTTGAACTTAGTACTACACACGTGACCTAACCATTTGATATACG
1 CTATCGGGTACACATAGAAGAC-TGAACTTAGTACTACACACGCGACCTAACCATCTGATACACG
* *
23243409 TAGTAGCCTACACTTAGTACTACACATGTGA-TTGAA
65 TAGTAGCCTGCACTTAGTACTACACATGTGACCT-AA
* * * * * * * *
23243445 GTTGTCGGGTACGCATAGAAGACTGCACTTAGTACTATACATGCGACCTAACTATCTGGTACACG
1 -CTATCGGGTACACATAGAAGACTGAACTTAGTACTACACACGCGACCTAACCATCTGATACACG
* *
23243510 TAGTAGCCTGCATTTAGTACTACACACGTGACCTAA
65 TAGTAGCCTGCACTTAGTACTACACATGTGACCTAA
23243546 AACCATCTTA
Statistics
Matches: 245, Mismatches: 45, Indels: 22
0.79 0.14 0.07
Matches are distributed among these distances:
99 40 0.16
100 41 0.17
101 160 0.65
102 4 0.02
ACGTcount: A:0.30, C:0.25, G:0.18, T:0.27
Consensus pattern (100 bp):
CTATCGGGTACACATAGAAGACTGAACTTAGTACTACACACGCGACCTAACCATCTGATACACGT
AGTAGCCTGCACTTAGTACTACACATGTGACCTAA
Found at i:23245124 original size:6 final size:6
Alignment explanation
Indices: 23245113--23245137 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
23245103 AATGAATTAC
23245113 TTATAT TTATAT TTATAT TTATAT T
1 TTATAT TTATAT TTATAT TTATAT T
23245138 GTAACAATAG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (6 bp):
TTATAT
Found at i:23250135 original size:14 final size:16
Alignment explanation
Indices: 23250116--23250155 Score: 66
Period size: 14 Copynumber: 2.6 Consensus size: 16
23250106 AAGATTTAAA
23250116 TATTGAATTTT-TA-G
1 TATTGAATTTTATAGG
23250130 TATTGAATTTTATAGG
1 TATTGAATTTTATAGG
23250146 TATTGAATTT
1 TATTGAATTT
23250156 ATATTAAAAA
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
14 11 0.46
15 2 0.08
16 11 0.46
ACGTcount: A:0.30, C:0.00, G:0.15, T:0.55
Consensus pattern (16 bp):
TATTGAATTTTATAGG
Found at i:23252055 original size:25 final size:25
Alignment explanation
Indices: 23252011--23252109 Score: 117
Period size: 25 Copynumber: 4.0 Consensus size: 25
23252001 CACAACTCTT
* * *
23252011 ATGAGCTTCCCGATACTCAGCTCAC
1 ATGAGCTTCCCGTTATTCAGCTCGC
* *
23252036 ATGAGCTTTCCGTTATTCAGTTCGC
1 ATGAGCTTCCCGTTATTCAGCTCGC
* *
23252061 ATAAGCTTCCCGTTATTCTGCTCGC
1 ATGAGCTTCCCGTTATTCAGCTCGC
* *
23252086 ATGAGCTTCCCATTATTCAACTCG
1 ATGAGCTTCCCGTTATTCAGCTCG
23252110 GAAGAACTTA
Statistics
Matches: 61, Mismatches: 13, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
25 61 1.00
ACGTcount: A:0.20, C:0.30, G:0.16, T:0.33
Consensus pattern (25 bp):
ATGAGCTTCCCGTTATTCAGCTCGC
Found at i:23255500 original size:48 final size:48
Alignment explanation
Indices: 23255435--23255774 Score: 644
Period size: 48 Copynumber: 7.1 Consensus size: 48
23255425 GCTGAAATTA
*
23255435 ATGTATAAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
*
23255483 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAAT
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
23255531 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
*
23255579 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAAT
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
*
23255627 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAAT
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
23255675 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
23255723 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
23255771 ATGT
1 ATGT
23255775 GTAACGCCCC
Statistics
Matches: 287, Mismatches: 5, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
48 287 1.00
ACGTcount: A:0.35, C:0.06, G:0.28, T:0.31
Consensus pattern (48 bp):
ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
Found at i:23257235 original size:93 final size:93
Alignment explanation
Indices: 23257076--23257247 Score: 299
Period size: 93 Copynumber: 1.8 Consensus size: 93
23257066 CGCCCATAAG
* ***
23257076 CGAACTCGGACTCAACTCAATGAGCTCGGGTGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
23257141 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
*
23257169 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
23257234 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
23257248 TCAACCATCC
Statistics
Matches: 74, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.28, C:0.28, G:0.22, T:0.22
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:23257244 original size:46 final size:46
Alignment explanation
Indices: 23257069--23257244 Score: 198
Period size: 46 Copynumber: 3.8 Consensus size: 46
23257059 TGTAACCCGC
* * ***
23257069 CCATAAGCGAACTCGGACTCAACTCAATGAGCTCGGGTGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* *
23257115 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
*
23257165 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
23257208 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
23257245 TGCTCAACCA
Statistics
Matches: 109, Mismatches: 12, Indels: 18
0.78 0.09 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 62 0.57
47 29 0.27
48 2 0.02
49 1 0.01
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:23258194 original size:48 final size:48
Alignment explanation
Indices: 23258067--23258220 Score: 238
Period size: 48 Copynumber: 3.2 Consensus size: 48
23258057 GGGATATTAC
* *
23258067 AATATGTATGAGATATGCATATGTGGTAAAGCCGAATGG-TCAATGTGAA
1 AATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCT-AGTGTG-A
*
23258116 ATATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGA
1 A-ATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGA
*
23258165 AATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTAA
1 AATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGA
23258213 AATATGTA
1 AATATGTA
23258221 GGCGATGTGC
Statistics
Matches: 98, Mismatches: 5, Indels: 5
0.91 0.05 0.05
Matches are distributed among these distances:
48 53 0.54
49 3 0.03
50 41 0.42
51 1 0.01
ACGTcount: A:0.36, C:0.06, G:0.26, T:0.31
Consensus pattern (48 bp):
AATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGA
Found at i:23258417 original size:37 final size:37
Alignment explanation
Indices: 23258367--23258438 Score: 117
Period size: 37 Copynumber: 1.9 Consensus size: 37
23258357 GGAAATATAT
*
23258367 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATAACTACGTGTGGAGATTTTG
**
23258404 TCCGGGTAAGACCCGATAACTTTGTGTGGAGATTT
1 TCCGGGTAAGACCCGATAACTACGTGTGGAGATTT
23258439 CGTCTGAGCT
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
37 32 1.00
ACGTcount: A:0.22, C:0.18, G:0.31, T:0.29
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATAACTACGTGTGGAGATTTTG
Found at i:23261223 original size:42 final size:41
Alignment explanation
Indices: 23261102--23261223 Score: 138
Period size: 43 Copynumber: 2.9 Consensus size: 41
23261092 TATCGTACCA
* * *
23261102 ATGCTATATCCCATATATGGTCTTACATGTAATCTCGTATCG
1 ATGCCATATCCCA-ATATGGTCTTACACGTAATCTCATATCG
* *
23261144 ATGCCAATAGCCCAACTATAGTCTTACACG-AAGTCTCATATCG
1 ATGCC-ATATCCCAA-TATGGTCTTACACGTAA-TCTCATATCG
*
23261187 ATGCCATATCCCAGATTTGGTCTTACACGTAATCTCA
1 ATGCCATATCCCA-ATATGGTCTTACACGTAATCTCA
23261224 GTGACCCTAA
Statistics
Matches: 67, Mismatches: 8, Indels: 10
0.79 0.09 0.12
Matches are distributed among these distances:
42 31 0.46
43 36 0.54
ACGTcount: A:0.29, C:0.25, G:0.14, T:0.32
Consensus pattern (41 bp):
ATGCCATATCCCAATATGGTCTTACACGTAATCTCATATCG
Found at i:23269150 original size:40 final size:40
Alignment explanation
Indices: 23269104--23269192 Score: 103
Period size: 40 Copynumber: 2.2 Consensus size: 40
23269094 AGTCTTACAT
*
23269104 ACTAAGTG-TCGTATATAACTGAAGCTAATC-CGAAT-CGCAC
1 ACTAAGTGCT-GTATATAACTGAAGAT-ATCTC-AATACGCAC
* *
23269144 ACTAAGTGCTTTATATAGCTGAAGATATCTCAATACGCAC
1 ACTAAGTGCTGTATATAACTGAAGATATCTCAATACGCAC
23269184 ACTAAGTGC
1 ACTAAGTGC
23269193 CAAACATAAT
Statistics
Matches: 43, Mismatches: 3, Indels: 6
0.83 0.06 0.12
Matches are distributed among these distances:
39 6 0.14
40 36 0.84
41 1 0.02
ACGTcount: A:0.35, C:0.21, G:0.17, T:0.27
Consensus pattern (40 bp):
ACTAAGTGCTGTATATAACTGAAGATATCTCAATACGCAC
Found at i:23285839 original size:48 final size:48
Alignment explanation
Indices: 23285775--23286105 Score: 281
Period size: 48 Copynumber: 6.9 Consensus size: 48
23285765 GGTGAATTGT
* * * *
23285775 CGATGCTATGTTCCAAACATGGTCTTACACTGGCTCACATGTCGAGGC
1 CGATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCATATCGAGGC
* * * * **
23285823 CGATGCCATGTCCCAAACATGGTCTTACACTAGCTCTCGTCTCAATTC
1 CGATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCATATCGAGGC
* ** * * *
23285871 CAATGATATGTCTCAAACATGGTCTTACACTGGCTCTCATAAT-GTGGT
1 CGATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCAT-ATCGAGGC
* * * * ** *
23285919 CGATGCCATGTCCCAGACATGGTCTTACACTAGCGCACATATTAATGC
1 CGATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCATATCGAGGC
* * *
23285967 CGATGCCATGTCCCAGACATGGTCTTACACTGTCTCTCAT-TAC-ATTGC
1 CGATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCATAT-CGA-GGC
* * * * * * *
23286015 CGATGTCATGTTCCAAACATTGTCTTACACAGGCTCTCGTATCGTGGT
1 CGATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCATATCGAGGC
* * * *
23286063 CGATGCCATGTTCCAGACATGGTCTTACACTGGCGCACATATC
1 CGATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCATATC
23286106 AACCAAATGT
Statistics
Matches: 222, Mismatches: 55, Indels: 12
0.77 0.19 0.04
Matches are distributed among these distances:
47 4 0.02
48 216 0.97
49 2 0.01
ACGTcount: A:0.24, C:0.28, G:0.19, T:0.29
Consensus pattern (48 bp):
CGATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCATATCGAGGC
Found at i:23286033 original size:144 final size:144
Alignment explanation
Indices: 23285773--23286107 Score: 439
Period size: 144 Copynumber: 2.3 Consensus size: 144
23285763 AGGGTGAATT
* * * * *
23285773 GTCGATGCTATGTTCCAAACATGGTCTTACACTGGCTCACATGTCGAGGCCGATGCCATGTCCCA
1 GTCGATGCCATGTTCCAGACATGGTCTTACACTGGCGCACATATCAAGGCCGATGCCATGTCCCA
* *
23285838 AACATGGTCTTACACTAGCTCTCGTCTCAATTCCAATGATATGTCTCAAACATGGTCTTACACTG
66 AACATGGTCTTACACTAGCTCTCATCTCAATTCCAATGATATGTCTCAAACATGGTCTTACACAG
23285903 GCTCTCATAAT-GTG
131 GCTCTCAT-ATCGTG
* * * *
23285917 GTCGATGCCATGTCCCAGACATGGTCTTACACTAGCGCACATATTAATGCCGATGCCATGTCCCA
1 GTCGATGCCATGTTCCAGACATGGTCTTACACTGGCGCACATATCAAGGCCGATGCCATGTCCCA
* * *
23285982 GACATGGTCTTACACT-GTCTCTCAT-T-ACATTGCCGATG-TCATGT-TCCAAACATTGTCTTA
66 AACATGGTCTTACACTAG-CTCTCATCTCA-ATT-CCAATGAT-ATGTCT-CAAACATGGTCTTA
*
23286042 CACAGGCTCTCGTATCGTG
126 CACAGGCTCTCATATCGTG
23286061 GTCGATGCCATGTTCCAGACATGGTCTTACACTGGCGCACATATCAA
1 GTCGATGCCATGTTCCAGACATGGTCTTACACTGGCGCACATATCAA
23286108 CCAAATGTCA
Statistics
Matches: 167, Mismatches: 18, Indels: 12
0.85 0.09 0.06
Matches are distributed among these distances:
142 1 0.01
143 9 0.05
144 157 0.94
ACGTcount: A:0.24, C:0.28, G:0.19, T:0.29
Consensus pattern (144 bp):
GTCGATGCCATGTTCCAGACATGGTCTTACACTGGCGCACATATCAAGGCCGATGCCATGTCCCA
AACATGGTCTTACACTAGCTCTCATCTCAATTCCAATGATATGTCTCAAACATGGTCTTACACAG
GCTCTCATATCGTG
Found at i:23297963 original size:17 final size:17
Alignment explanation
Indices: 23297941--23297974 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
23297931 TACTTTAAAC
*
23297941 AAATAGAGTAATAGAAT
1 AAATAGACTAATAGAAT
23297958 AAATAGACTAATAGAAT
1 AAATAGACTAATAGAAT
23297975 CCTTATTAGG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.59, C:0.03, G:0.15, T:0.24
Consensus pattern (17 bp):
AAATAGACTAATAGAAT
Found at i:23300025 original size:43 final size:43
Alignment explanation
Indices: 23299964--23300049 Score: 172
Period size: 43 Copynumber: 2.0 Consensus size: 43
23299954 TTAAAAGCTG
23299964 AAACCATCAAAATTACAATAAATTAATTTCAAAGCATTTTCAA
1 AAACCATCAAAATTACAATAAATTAATTTCAAAGCATTTTCAA
23300007 AAACCATCAAAATTACAATAAATTAATTTCAAAGCATTTTCAA
1 AAACCATCAAAATTACAATAAATTAATTTCAAAGCATTTTCAA
23300050 TTATAAGGGA
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 43 1.00
ACGTcount: A:0.51, C:0.16, G:0.02, T:0.30
Consensus pattern (43 bp):
AAACCATCAAAATTACAATAAATTAATTTCAAAGCATTTTCAA
Found at i:23303774 original size:24 final size:23
Alignment explanation
Indices: 23303747--23303831 Score: 100
Period size: 23 Copynumber: 3.7 Consensus size: 23
23303737 ATTAACATTA
23303747 TTCATGAACATGTTCAATTATATG
1 TTCATGAACATGTTCAATTA-ATG
*
23303771 TTCATGAACATGTTCATTTAATG
1 TTCATGAACATGTTCAATTAATG
* *
23303794 TTCGTGAACATGTTCGATTAA-G
1 TTCATGAACATGTTCAATTAATG
* *
23303816 TTAAATGAATATGTTC
1 TT-CATGAACATGTTC
23303832 GTGAACATTA
Statistics
Matches: 53, Mismatches: 7, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
22 3 0.06
23 31 0.58
24 19 0.36
ACGTcount: A:0.32, C:0.12, G:0.15, T:0.41
Consensus pattern (23 bp):
TTCATGAACATGTTCAATTAATG
Found at i:23303809 original size:12 final size:12
Alignment explanation
Indices: 23303747--23303808 Score: 56
Period size: 12 Copynumber: 5.2 Consensus size: 12
23303737 ATTAACATTA
23303747 TTCATGAACATG
1 TTCATGAACATG
* *
23303759 TTCAAT-TATATG
1 TTC-ATGAACATG
23303771 TTCATGAACATG
1 TTCATGAACATG
**
23303783 TTCATTTA-ATG
1 TTCATGAACATG
*
23303794 TTCGTGAACATG
1 TTCATGAACATG
23303806 TTC
1 TTC
23303809 GATTAAGTTA
Statistics
Matches: 38, Mismatches: 9, Indels: 6
0.72 0.17 0.11
Matches are distributed among these distances:
11 10 0.26
12 26 0.68
13 2 0.05
ACGTcount: A:0.29, C:0.15, G:0.15, T:0.42
Consensus pattern (12 bp):
TTCATGAACATG
Found at i:23309202 original size:15 final size:15
Alignment explanation
Indices: 23309182--23309220 Score: 55
Period size: 14 Copynumber: 2.7 Consensus size: 15
23309172 GTTGCAAATG
23309182 TAAAATTATATTTTT
1 TAAAATTATATTTTT
*
23309197 TAAAA-TATAATTTT
1 TAAAATTATATTTTT
23309211 T-AAATTATAT
1 TAAAATTATAT
23309221 AAATTGTAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 3
0.81 0.08 0.12
Matches are distributed among these distances:
13 3 0.14
14 13 0.62
15 5 0.24
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (15 bp):
TAAAATTATATTTTT
Found at i:23315877 original size:18 final size:18
Alignment explanation
Indices: 23315854--23315891 Score: 67
Period size: 18 Copynumber: 2.1 Consensus size: 18
23315844 AATATATATT
23315854 AACCCAAGTACCCAACCC
1 AACCCAAGTACCCAACCC
*
23315872 AACCCAATTACCCAACCC
1 AACCCAAGTACCCAACCC
23315890 AA
1 AA
23315892 TCATAAAAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.42, C:0.47, G:0.03, T:0.08
Consensus pattern (18 bp):
AACCCAAGTACCCAACCC
Found at i:23315884 original size:13 final size:13
Alignment explanation
Indices: 23315868--23315892 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
23315858 CAAGTACCCA
23315868 ACCCAACCCAATT
1 ACCCAACCCAATT
23315881 ACCCAACCCAAT
1 ACCCAACCCAAT
23315893 CATAAAAATT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.48, G:0.00, T:0.12
Consensus pattern (13 bp):
ACCCAACCCAATT
Found at i:23315983 original size:9 final size:9
Alignment explanation
Indices: 23315969--23316036 Score: 73
Period size: 9 Copynumber: 7.6 Consensus size: 9
23315959 TTTATACAAA
*
23315969 TAATTCGGT
1 TAATTCGGG
23315978 TAATTCGGG
1 TAATTCGGG
*
23315987 TAATTAGGG
1 TAATTCGGG
23315996 TAATTCGGG
1 TAATTCGGG
**
23316005 TAATTTAGG
1 TAATTCGGG
**
23316014 TAATTCGAT
1 TAATTCGGG
*
23316023 TAATTCGGT
1 TAATTCGGG
23316032 TAATT
1 TAATT
23316037 TTATACTTAT
Statistics
Matches: 49, Mismatches: 10, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
9 49 1.00
ACGTcount: A:0.28, C:0.07, G:0.24, T:0.41
Consensus pattern (9 bp):
TAATTCGGG
Found at i:23316037 original size:27 final size:27
Alignment explanation
Indices: 23315969--23316037 Score: 84
Period size: 27 Copynumber: 2.6 Consensus size: 27
23315959 TTTATACAAA
** *
23315969 TAATTCGGTTAATTCGGGTAATTAGGG
1 TAATTCGGTTAATTTAGGTAATTAGAG
* * *
23315996 TAATTCGGGTAATTTAGGTAATTCGAT
1 TAATTCGGTTAATTTAGGTAATTAGAG
23316023 TAATTCGGTTAATTT
1 TAATTCGGTTAATTT
23316038 TATACTTATT
Statistics
Matches: 35, Mismatches: 7, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
27 35 1.00
ACGTcount: A:0.28, C:0.07, G:0.23, T:0.42
Consensus pattern (27 bp):
TAATTCGGTTAATTTAGGTAATTAGAG
Found at i:23316486 original size:16 final size:17
Alignment explanation
Indices: 23316467--23316503 Score: 51
Period size: 16 Copynumber: 2.3 Consensus size: 17
23316457 AAAAAATTTA
*
23316467 ATAAAT-AAATAAAATT
1 ATAAATAAAATAAAAAT
23316483 AT-AATAAAATAAAAAT
1 ATAAATAAAATAAAAAT
23316499 ATAAA
1 ATAAA
23316504 AAACTATTAG
Statistics
Matches: 18, Mismatches: 1, Indels: 3
0.82 0.05 0.14
Matches are distributed among these distances:
15 3 0.17
16 13 0.72
17 2 0.11
ACGTcount: A:0.73, C:0.00, G:0.00, T:0.27
Consensus pattern (17 bp):
ATAAATAAAATAAAAAT
Found at i:23316487 original size:19 final size:19
Alignment explanation
Indices: 23316459--23316495 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 19
23316449 AATAGATTAA
23316459 AAAATTTAAT-AAATAAAT
1 AAAATTTAATAAAATAAAT
23316477 AAAATTATAATAAAATAAA
1 AAAATT-TAATAAAATAAA
23316496 AATATAAAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 6 0.35
19 4 0.24
20 7 0.41
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (19 bp):
AAAATTTAATAAAATAAAT
Found at i:23317339 original size:26 final size:25
Alignment explanation
Indices: 23317286--23317343 Score: 71
Period size: 25 Copynumber: 2.3 Consensus size: 25
23317276 TTTTATTTTC
*
23317286 TTTTTCATTTTCTCTAATTCTCCTT
1 TTTTTCATTTTCTCTAATTCTCCAT
* * *
23317311 TTTTTCTTTTTCTTTACTTCTTCCAT
1 TTTTTCATTTTCTCTAATTC-TCCAT
23317337 TTTTTCA
1 TTTTTCA
23317344 AAGATTTTTT
Statistics
Matches: 27, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
25 17 0.63
26 10 0.37
ACGTcount: A:0.10, C:0.22, G:0.00, T:0.67
Consensus pattern (25 bp):
TTTTTCATTTTCTCTAATTCTCCAT
Found at i:23331584 original size:188 final size:188
Alignment explanation
Indices: 23331262--23331633 Score: 681
Period size: 188 Copynumber: 2.0 Consensus size: 188
23331252 TATTTTATTA
*
23331262 TTATTTTGGGGTTATAGCATGTTAATATTAGTGTATGGAAAATTTGGTGAATTAATTTTAGCGAT
1 TTATTTTGGGGTTATAACATGTTAATATTAGTGTATGGAAAATTTGGTGAATTAATTTTAGCGAT
*
23331327 GGCTTGCTCAATTGTGAAAAAGGACTAAATCGCATAAAAGGCAAAAGTTGCAAACTAGTGCCTAA
66 GGCTTGCTCAATTGTGAAAAAGGACTAAATCGCATAAAAGGCAAAAGTTGCAAACTAGTGCCCAA
* *
23331392 ATGTGTCAATTAGCTAGAGGACTTAAATTGGGGGTCTTTAAAGGGCAAATAGACATTG
131 ATGTGTCAATTAGCTAGAGGACTTAAATCGGGGGTCTTTAAAGGGAAAATAGACATTG
23331450 TTATTTTGGGGTTATAACATGTTAATATTAGTGTATGGAAAATTTGGTGAATTAATTTTAGCGAT
1 TTATTTTGGGGTTATAACATGTTAATATTAGTGTATGGAAAATTTGGTGAATTAATTTTAGCGAT
*
23331515 GGCTTGCTCAATTGTGAAAAAGGACTAAATCGCATAAAAGGGAAAAGTTGCAAACTAGTGCCCAA
66 GGCTTGCTCAATTGTGAAAAAGGACTAAATCGCATAAAAGGCAAAAGTTGCAAACTAGTGCCCAA
* *
23331580 ATGTGTCAATTAGCTAGAGGACTTAAATCGGGTGTCTTTAAGGGGAAAATAGAC
131 ATGTGTCAATTAGCTAGAGGACTTAAATCGGGGGTCTTTAAAGGGAAAATAGAC
23331634 CCTTAGGGAG
Statistics
Matches: 177, Mismatches: 7, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
188 177 1.00
ACGTcount: A:0.34, C:0.10, G:0.24, T:0.31
Consensus pattern (188 bp):
TTATTTTGGGGTTATAACATGTTAATATTAGTGTATGGAAAATTTGGTGAATTAATTTTAGCGAT
GGCTTGCTCAATTGTGAAAAAGGACTAAATCGCATAAAAGGCAAAAGTTGCAAACTAGTGCCCAA
ATGTGTCAATTAGCTAGAGGACTTAAATCGGGGGTCTTTAAAGGGAAAATAGACATTG
Found at i:23331866 original size:12 final size:12
Alignment explanation
Indices: 23331849--23331873 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
23331839 ATGTAAGTGA
23331849 TCTTGATGATTT
1 TCTTGATGATTT
23331861 TCTTGATGATTT
1 TCTTGATGATTT
23331873 T
1 T
23331874 TACATTTTTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.16, C:0.08, G:0.16, T:0.60
Consensus pattern (12 bp):
TCTTGATGATTT
Found at i:23332731 original size:46 final size:47
Alignment explanation
Indices: 23332587--23332852 Score: 243
Period size: 47 Copynumber: 5.7 Consensus size: 47
23332577 TGTGTGTGCT
* * *
23332587 AGTGTAAGA-CATGTCTGAGACAT-GCATCGGCCAC-ATTATGGAA-GC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGA-GAT-GAAGGC
23332632 TAGTGTAAGACCATGTCTGGGACATGGCATCGGCACT-GAGATG-AGTGC
1 -AGTGTAAGACCATGTCTGGGACATGGCATCGGC-CTCGAGATGAAG-GC
23332680 TAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTCGAGATGTAAGGC
1 -AGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGAGATG-AAGGC
* * *
23332727 AGTGTAA-AACATGTCTGGGACAT-GCATTGG-CTACGAGATGATAGTC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCT-CGAGATGA-AGGC
* * * * *
23332773 AGTGTAAGACCATGCCTGGGACATGGAATC-GACTTGAGGTATG-AGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGA-G-ATGAAGGC
23332820 AGTGTAAGACCATGTCTGGGACATGGCATCGGC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGC
23332853 ATCTTACCCA
Statistics
Matches: 188, Mismatches: 14, Indels: 34
0.80 0.06 0.14
Matches are distributed among these distances:
45 6 0.03
46 68 0.36
47 78 0.41
48 31 0.16
49 5 0.03
ACGTcount: A:0.27, C:0.19, G:0.31, T:0.23
Consensus pattern (47 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGAGATGAAGGC
Found at i:23340248 original size:14 final size:14
Alignment explanation
Indices: 23340229--23340255 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
23340219 AGTCCAATCC
23340229 AAAATAAACCAAAA
1 AAAATAAACCAAAA
23340243 AAAATAAACCAAA
1 AAAATAAACCAAA
23340256 CCAAAAACAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.78, C:0.15, G:0.00, T:0.07
Consensus pattern (14 bp):
AAAATAAACCAAAA
Found at i:23343076 original size:46 final size:46
Alignment explanation
Indices: 23343024--23343196 Score: 190
Period size: 46 Copynumber: 3.7 Consensus size: 46
23343014 TGGTTGAGCA
* *
23343024 TCCGAACTCGTTGAGTTGAGTTCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* * * * *
23343070 TTCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--A--CG
* *
23343117 TCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* *
23343163 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
23343197 GGGGCGGGTT
Statistics
Matches: 104, Mismatches: 16, Indels: 14
0.78 0.12 0.10
Matches are distributed among these distances:
43 6 0.06
45 3 0.03
46 59 0.57
47 28 0.27
48 3 0.03
50 5 0.05
ACGTcount: A:0.22, C:0.20, G:0.28, T:0.31
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
Found at i:23343180 original size:93 final size:93
Alignment explanation
Indices: 23343021--23343191 Score: 279
Period size: 93 Copynumber: 1.8 Consensus size: 93
23343011 GGATGGTTGA
* * **
23343021 GCATCCGAACTCGTTGAGTTGAGTTCGAGTTCACTTATGGATGCAAATGTTCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
23343086 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* * *
23343114 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
23343179 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
23343192 ACTTAGGGGC
Statistics
Matches: 71, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 71 1.00
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.30
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Done.