Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A06
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 115140250
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2234201 characters in sequence are not A, C, G, or T
File 77 of 345
Found at i:24892750 original size:20 final size:20
Alignment explanation
Indices: 24892725--24892775 Score: 84
Period size: 20 Copynumber: 2.5 Consensus size: 20
24892715 GTTTTAGAGA
24892725 GTCACACGCCCGTGTGGCTT
1 GTCACACGCCCGTGTGGCTT
24892745 GTCACACGCCCGTGTGGCTT
1 GTCACACGCCCGTGTGGCTT
**
24892765 GGGACACGCCC
1 GTCACACGCCC
24892776 ATGCCCTCAG
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 29 1.00
ACGTcount: A:0.12, C:0.37, G:0.31, T:0.20
Consensus pattern (20 bp):
GTCACACGCCCGTGTGGCTT
Found at i:24897689 original size:24 final size:24
Alignment explanation
Indices: 24897662--24897712 Score: 102
Period size: 24 Copynumber: 2.1 Consensus size: 24
24897652 TCAGTTAGAA
24897662 CTTTCTTGAGATTTTCAAAGTTTT
1 CTTTCTTGAGATTTTCAAAGTTTT
24897686 CTTTCTTGAGATTTTCAAAGTTTT
1 CTTTCTTGAGATTTTCAAAGTTTT
24897710 CTT
1 CTT
24897713 ACTGTGCATC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 27 1.00
ACGTcount: A:0.20, C:0.14, G:0.12, T:0.55
Consensus pattern (24 bp):
CTTTCTTGAGATTTTCAAAGTTTT
Found at i:24904660 original size:33 final size:34
Alignment explanation
Indices: 24904623--24904701 Score: 83
Period size: 34 Copynumber: 2.4 Consensus size: 34
24904613 ATCAGTAAGT
* *
24904623 CCAGTTTCAGT-TAGGGCCTTAG-CCATTACAGTA
1 CCAGTATCAGTGT-GGGCCTGAGCCCATTACAGTA
*
24904656 CCAGTATCAGTGTGGGCCTGAGCCCATTTCAGTGA
1 CCAGTATCAGTGTGGGCCTGAGCCCATTACAGT-A
*
24904691 -CAGTAGCAGTG
1 CCAGTATCAGTG
24904702 CAGATATGCA
Statistics
Matches: 39, Mismatches: 4, Indels: 5
0.81 0.08 0.10
Matches are distributed among these distances:
33 18 0.46
34 20 0.51
35 1 0.03
ACGTcount: A:0.23, C:0.24, G:0.27, T:0.27
Consensus pattern (34 bp):
CCAGTATCAGTGTGGGCCTGAGCCCATTACAGTA
Found at i:24906043 original size:5 final size:5
Alignment explanation
Indices: 24906033--24906061 Score: 58
Period size: 5 Copynumber: 5.8 Consensus size: 5
24906023 CGAAGGGGGG
24906033 AGAGA AGAGA AGAGA AGAGA AGAGA AGAG
1 AGAGA AGAGA AGAGA AGAGA AGAGA AGAG
24906062 GTTCGGCTAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 24 1.00
ACGTcount: A:0.59, C:0.00, G:0.41, T:0.00
Consensus pattern (5 bp):
AGAGA
Found at i:24906906 original size:42 final size:42
Alignment explanation
Indices: 24906860--24906956 Score: 106
Period size: 42 Copynumber: 2.3 Consensus size: 42
24906850 GTCCCATATG
** * *
24906860 TGGTCTTACATGGGATCTCACATCGATGCCATATACT-AGATA
1 TGGTCTTACATGAAATCTCACATCAATACCATAT-CTCAGATA
* ** *
24906902 TGGTCTTATACAAAATCTCATATCAATACCATATCTCAGATA
1 TGGTCTTACATGAAATCTCACATCAATACCATATCTCAGATA
24906944 TGGTCTTACATGA
1 TGGTCTTACATGA
24906957 TAACTGTAAC
Statistics
Matches: 43, Mismatches: 11, Indels: 2
0.77 0.20 0.04
Matches are distributed among these distances:
41 2 0.05
42 41 0.95
ACGTcount: A:0.32, C:0.21, G:0.14, T:0.33
Consensus pattern (42 bp):
TGGTCTTACATGAAATCTCACATCAATACCATATCTCAGATA
Found at i:24908635 original size:71 final size:71
Alignment explanation
Indices: 24908516--24908674 Score: 282
Period size: 71 Copynumber: 2.2 Consensus size: 71
24908506 ACTTGTTGTA
** *
24908516 TTCGCACACTTAGTGCTATTATTTAACTCGCAATGCAATGAGATCGCACACTTAGTGCTTGATAG
1 TTCGCACACTTAGTGCTATTATTTAACTCGCAATGCAATGAGATCGCACACTTAGTGCTCAATAA
24908581 TTTTAC
66 TTTTAC
*
24908587 TTTGCACACTTAGTGCTATTATTTAACTCGCAATGCAATGAGATCGCACACTTAGTGCTCAATAA
1 TTCGCACACTTAGTGCTATTATTTAACTCGCAATGCAATGAGATCGCACACTTAGTGCTCAATAA
24908652 TTTTAC
66 TTTTAC
24908658 TTCGCACACTTAGTGCT
1 TTCGCACACTTAGTGCT
24908675 CGATAATTCA
Statistics
Matches: 83, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
71 83 1.00
ACGTcount: A:0.27, C:0.22, G:0.16, T:0.35
Consensus pattern (71 bp):
TTCGCACACTTAGTGCTATTATTTAACTCGCAATGCAATGAGATCGCACACTTAGTGCTCAATAA
TTTTAC
Found at i:24923145 original size:40 final size:40
Alignment explanation
Indices: 24923051--24923195 Score: 193
Period size: 40 Copynumber: 3.6 Consensus size: 40
24923041 TACTCGAATG
*
24923051 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGCGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCT-AGCGACT
* *
24923092 ACATCCGGACTAAGAT-CCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAG-TCCCGAAGGCATTTGTGCTAGCGACT
* * *
24923132 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGCGACT
* *
24923172 ATATCCGGGTTAAGACCCGAAGGC
1 ATATCCGGGCTAAGTCCCGAAGGC
24923196 CTTGTGCGAG
Statistics
Matches: 92, Mismatches: 10, Indels: 5
0.86 0.09 0.05
Matches are distributed among these distances:
39 1 0.01
40 62 0.67
41 28 0.30
42 1 0.01
ACGTcount: A:0.26, C:0.25, G:0.26, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGCGACT
Found at i:24925019 original size:58 final size:58
Alignment explanation
Indices: 24924956--24925073 Score: 227
Period size: 58 Copynumber: 2.0 Consensus size: 58
24924946 ATTCAACATG
24924956 TTCATTTAAGTGCAATTTTAATTATTTTATAAAAATTAATTATTTTTCGATAAGAATT
1 TTCATTTAAGTGCAATTTTAATTATTTTATAAAAATTAATTATTTTTCGATAAGAATT
*
24925014 TTCATTTAAGTGCAATTTTAATTATTTTATAAAAATTAATTATTTTTGGATAAGAATT
1 TTCATTTAAGTGCAATTTTAATTATTTTATAAAAATTAATTATTTTTCGATAAGAATT
24925072 TT
1 TT
24925074 ATCAAAACTA
Statistics
Matches: 59, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
58 59 1.00
ACGTcount: A:0.37, C:0.04, G:0.08, T:0.51
Consensus pattern (58 bp):
TTCATTTAAGTGCAATTTTAATTATTTTATAAAAATTAATTATTTTTCGATAAGAATT
Found at i:24925071 original size:21 final size:18
Alignment explanation
Indices: 24924973--24925059 Score: 61
Period size: 18 Copynumber: 4.6 Consensus size: 18
24924963 AAGTGCAATT
24924973 TTAATTATTTTATAAAAA
1 TTAATTATTTTATAAAAA
*
24924991 TTAATTATTTTTCGATAAGAA
1 TTAATTA-TTTT--ATAAAAA
* * **
24925012 TT--TTCATTTAAGTGCAATT
1 TTAATT-ATTTTA-T-AAAAA
24925031 TTAATTATTTTATAAAAA
1 TTAATTATTTTATAAAAA
24925049 TTAATTATTTT
1 TTAATTATTTT
24925060 TGGATAAGAA
Statistics
Matches: 51, Mismatches: 10, Indels: 16
0.66 0.13 0.21
Matches are distributed among these distances:
17 1 0.02
18 21 0.41
19 13 0.25
20 6 0.12
21 10 0.20
ACGTcount: A:0.39, C:0.03, G:0.05, T:0.53
Consensus pattern (18 bp):
TTAATTATTTTATAAAAA
Found at i:24926294 original size:28 final size:28
Alignment explanation
Indices: 24926262--24926317 Score: 94
Period size: 28 Copynumber: 2.0 Consensus size: 28
24926252 TATTCTGAGT
* *
24926262 AGAAATAATTTCAATTTTTCGGTCCCAC
1 AGAAATAATTTCAAGTTTTCAGTCCCAC
24926290 AGAAATAATTTCAAGTTTTCAGTCCCAC
1 AGAAATAATTTCAAGTTTTCAGTCCCAC
24926318 TATTTAAAAT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
28 26 1.00
ACGTcount: A:0.34, C:0.21, G:0.11, T:0.34
Consensus pattern (28 bp):
AGAAATAATTTCAAGTTTTCAGTCCCAC
Found at i:24927723 original size:25 final size:25
Alignment explanation
Indices: 24927667--24927723 Score: 62
Period size: 25 Copynumber: 2.2 Consensus size: 25
24927657 ATTTAGTTAA
*
24927667 TAAAAATTATTAATAATTCAATGAAT
1 TAAAAATTA-TAATAATTCAATAAAT
*
24927693 TGAAAAATTA-AATAATTGAATAAAAT
1 T-AAAAATTATAATAATTCAAT-AAAT
24927719 TAAAA
1 TAAAA
24927724 TTTAGGAGAA
Statistics
Matches: 27, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
25 14 0.52
26 5 0.19
27 8 0.30
ACGTcount: A:0.60, C:0.02, G:0.05, T:0.33
Consensus pattern (25 bp):
TAAAAATTATAATAATTCAATAAAT
Found at i:24928464 original size:22 final size:20
Alignment explanation
Indices: 24928425--24928471 Score: 60
Period size: 22 Copynumber: 2.2 Consensus size: 20
24928415 TGTAAAGTTG
24928425 ATAATAATTAATATATATT-
1 ATAATAATTAATATATATTA
24928444 ATAATAGATATAATTATATATTA
1 ATAATA-AT-TAA-TATATATTA
24928467 ATAAT
1 ATAAT
24928472 TATCATCTTT
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
19 6 0.25
20 2 0.08
21 3 0.12
22 8 0.33
23 5 0.21
ACGTcount: A:0.53, C:0.00, G:0.02, T:0.45
Consensus pattern (20 bp):
ATAATAATTAATATATATTA
Found at i:24931146 original size:37 final size:37
Alignment explanation
Indices: 24931082--24931157 Score: 95
Period size: 37 Copynumber: 2.1 Consensus size: 37
24931072 TTACAAGCCA
24931082 AAATCATTATAAGCCACATCTCATGGCTACAT-ACAAC
1 AAATCATTATAAGCCACATCTCATGGCTA-ATCACAAC
*
24931119 AAATCATTATAAGCCA-ATACAT-TTGGCTAATCACAAC
1 AAATCATTATAAGCCACAT-C-TCATGGCTAATCACAAC
24931156 AA
1 AA
24931158 CATCTATCAT
Statistics
Matches: 35, Mismatches: 1, Indels: 6
0.83 0.02 0.14
Matches are distributed among these distances:
36 4 0.11
37 30 0.86
38 1 0.03
ACGTcount: A:0.43, C:0.24, G:0.08, T:0.25
Consensus pattern (37 bp):
AAATCATTATAAGCCACATCTCATGGCTAATCACAAC
Found at i:24950059 original size:28 final size:27
Alignment explanation
Indices: 24950002--24950153 Score: 241
Period size: 27 Copynumber: 5.6 Consensus size: 27
24949992 TAAATTGTGC
*
24950002 AGCACTAAGTGTGCGAATTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
24950029 AGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAG-TTGACTATGT
24950057 AGCACTAAGTGTGCGAGTTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
*
24950084 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGAG-TTGACTATGT
* *
24950112 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGTTGACTATGT
*
24950139 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
24950154 GACTTAATAT
Statistics
Matches: 119, Mismatches: 4, Indels: 4
0.94 0.03 0.03
Matches are distributed among these distances:
27 66 0.55
28 53 0.45
ACGTcount: A:0.26, C:0.14, G:0.29, T:0.31
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGTTGACTATGT
Found at i:24950066 original size:55 final size:55
Alignment explanation
Indices: 24950002--24950153 Score: 259
Period size: 55 Copynumber: 2.8 Consensus size: 55
24949992 TAAATTGTGC
*
24950002 AGCACTAAGTGTGCGAATTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGT
*
24950057 AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGT
* * *
24950112 AGCACTAAGTGTGCGAGTTGATTATATAGCACTGAGTGTGCG
1 AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCG
24950154 GACTTAATAT
Statistics
Matches: 92, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
55 92 1.00
ACGTcount: A:0.26, C:0.14, G:0.29, T:0.31
Consensus pattern (55 bp):
AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGT
Found at i:24952294 original size:27 final size:28
Alignment explanation
Indices: 24952257--24952368 Score: 119
Period size: 27 Copynumber: 4.1 Consensus size: 28
24952247 ACATGGCTGG
*
24952257 CAGA-ACAGATA-TTGTGACAGAGTCAC
1 CAGATACAGATATTTGTGACAGAGCCAC
*
24952283 CAGATACAGATA-TTGT-AGCAGAGTCAC
1 CAGATACAGATATTTGTGA-CAGAGCCAC
* *
24952310 CAGAAACAGATATTTCTAGA-AGAGCCAC
1 CAGATACAGATATTTGT-GACAGAGCCAC
*
24952338 CAGAT-CAGATATTTGTGGCAGAGCCAC
1 CAGATACAGATATTTGTGACAGAGCCAC
24952365 CAGA
1 CAGA
24952369 ACGCTTCCTC
Statistics
Matches: 74, Mismatches: 6, Indels: 11
0.81 0.07 0.12
Matches are distributed among these distances:
26 6 0.08
27 53 0.72
28 14 0.19
30 1 0.01
ACGTcount: A:0.38, C:0.21, G:0.22, T:0.20
Consensus pattern (28 bp):
CAGATACAGATATTTGTGACAGAGCCAC
Found at i:24952501 original size:26 final size:27
Alignment explanation
Indices: 24952472--24952535 Score: 85
Period size: 26 Copynumber: 2.4 Consensus size: 27
24952462 CAAAATTAAC
24952472 CCTAGGGGTATAATGGTAATTTT-ACA
1 CCTAGGGGTATAATGGTAATTTTCACA
* * *
24952498 CCTAGAGGTAGAATGGTAATTTTCATA
1 CCTAGGGGTATAATGGTAATTTTCACA
*
24952525 CTTAGGGGTAT
1 CCTAGGGGTAT
24952536 TTTAGTAAAT
Statistics
Matches: 31, Mismatches: 6, Indels: 1
0.82 0.16 0.03
Matches are distributed among these distances:
26 21 0.68
27 10 0.32
ACGTcount: A:0.30, C:0.11, G:0.25, T:0.34
Consensus pattern (27 bp):
CCTAGGGGTATAATGGTAATTTTCACA
Found at i:24956337 original size:40 final size:40
Alignment explanation
Indices: 24956283--24956440 Score: 244
Period size: 40 Copynumber: 4.0 Consensus size: 40
24956273 CGGATGTAAC
*
24956283 AACCAGCACAAATGCCTTCGGGACTTAACCCGGTTATAAT
1 AACCCGCACAAATGCCTTCGGGACTTAACCCGGTTATAAT
* *
24956323 AATCCGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
1 AACCCGCACAAATGCCTTCGGGACTTAACCCGGTTATAAT
* * *
24956363 AACCCGCACGAATGCCTTCGGGACCTAACCCGATTATAAT
1 AACCCGCACAAATGCCTTCGGGACTTAACCCGGTTATAAT
* *
24956403 AACCCGCACAAATGCCTTCGAGACGTAACCCGGTTATA
1 AACCCGCACAAATGCCTTCGGGACTTAACCCGGTTATA
24956441 TTTTTTTTTC
Statistics
Matches: 108, Mismatches: 10, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
40 108 1.00
ACGTcount: A:0.30, C:0.30, G:0.18, T:0.22
Consensus pattern (40 bp):
AACCCGCACAAATGCCTTCGGGACTTAACCCGGTTATAAT
Found at i:24964245 original size:39 final size:40
Alignment explanation
Indices: 24964190--24964344 Score: 271
Period size: 39 Copynumber: 4.0 Consensus size: 40
24964180 CGGATGTAAC
* *
24964190 AACCAGCACAAATGCCTTCGGGACTTAACCCGGTTATAAT
1 AACCCGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
24964230 AA-CCGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
1 AACCCGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
24964269 AACCCGCACGAATGCCTTCGGGAC-TAACCCGGTTATAAT
1 AACCCGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
24964308 AACCCGCAC-AATGCCTTCGGGACTTAACCCGGTTATA
1 AACCCGCACGAATGCCTTCGGGACTTAACCCGGTTATA
24964345 TTTTTTTCAG
Statistics
Matches: 111, Mismatches: 2, Indels: 5
0.94 0.02 0.04
Matches are distributed among these distances:
38 14 0.13
39 74 0.67
40 23 0.21
ACGTcount: A:0.29, C:0.30, G:0.19, T:0.22
Consensus pattern (40 bp):
AACCCGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
Found at i:24967176 original size:28 final size:27
Alignment explanation
Indices: 24967094--24967180 Score: 115
Period size: 27 Copynumber: 3.2 Consensus size: 27
24967084 AACATGGCTG
*
24967094 CCAG-AACAGATATTGTGACAGAGTCA
1 CCAGAAACAGATATTGTGGCAGAGTCA
*
24967120 CCA-AATACAGATATTGTAGCAGAGTCA
1 CCAGAA-ACAGATATTGTGGCAGAGTCA
*
24967147 CCAGAAACAGATATTTGTGGCAGAGCCA
1 CCAGAAACAGATA-TTGTGGCAGAGTCA
24967175 CCAGAA
1 CCAGAA
24967181 CGCTTCCTCC
Statistics
Matches: 53, Mismatches: 4, Indels: 6
0.84 0.06 0.10
Matches are distributed among these distances:
26 4 0.08
27 29 0.55
28 20 0.38
ACGTcount: A:0.39, C:0.21, G:0.22, T:0.18
Consensus pattern (27 bp):
CCAGAAACAGATATTGTGGCAGAGTCA
Found at i:24978573 original size:27 final size:22
Alignment explanation
Indices: 24978518--24978567 Score: 93
Period size: 22 Copynumber: 2.3 Consensus size: 22
24978508 TACGTCTAGG
24978518 AACTTCTTGAATTGAATTTCCT
1 AACTTCTTGAATTGAATTTCCT
24978540 AACTTCTTGAATTGAATTTCCT
1 AACTTCTTGAATTGAATTTCCT
24978562 -ACTTCT
1 AACTTCT
24978568 ACTTCTGAAG
Statistics
Matches: 28, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
21 6 0.21
22 22 0.79
ACGTcount: A:0.26, C:0.20, G:0.08, T:0.46
Consensus pattern (22 bp):
AACTTCTTGAATTGAATTTCCT
Found at i:24982085 original size:27 final size:26
Alignment explanation
Indices: 24982047--24982131 Score: 98
Period size: 27 Copynumber: 3.2 Consensus size: 26
24982037 GGTCGTTATT
*
24982047 TGACCATAATGCCCTTGTAGGGTAAAA
1 TGACCGTAATGCCC-TGTAGGGTAAAA
*
24982074 TGACCGTAATGCCCCTATAGGGTAAAA
1 TGACCGTAATG-CCCTGTAGGGTAAAA
* * *
24982101 TGATCGTAATACACCTGTATGGTAAAA
1 TGACCGTAATGC-CCTGTAGGGTAAAA
24982128 TGAC
1 TGAC
24982132 GATTATTCCC
Statistics
Matches: 49, Mismatches: 7, Indels: 4
0.82 0.12 0.07
Matches are distributed among these distances:
26 1 0.02
27 45 0.92
28 3 0.06
ACGTcount: A:0.34, C:0.19, G:0.21, T:0.26
Consensus pattern (26 bp):
TGACCGTAATGCCCTGTAGGGTAAAA
Found at i:25008193 original size:43 final size:43
Alignment explanation
Indices: 25008035--25008196 Score: 129
Period size: 42 Copynumber: 3.8 Consensus size: 43
25008025 ATAGGATTCT
*
25008035 GATATGTGA-TTCATGTAAAACCACATCTGGGAC-GTTGGTATC
1 GATATGTGAGTTCATGTAAGACCACATCTGGGACAG-TGGTATC
* * * * * * *
25008077 AATTTGTGA-TTTATGTGTAAGACGATATCTGGGACATTGGCATC
1 GATATGTGAGTTCA--TGTAAGACCACATCTGGGACAGTGGTATC
** * *
25008121 G-TAAATGAGTTCGTGTAAGACC-CTGTCTGGGACAGTGGTATC
1 GATATGTGAGTTCATGTAAGACCAC-ATCTGGGACAGTGGTATC
25008163 GATATGTGA-TTACATGTAAGACCACATCTGGGAC
1 GATATGTGAGTT-CATGTAAGACCACATCTGGGAC
25008197 GTTGGCATTG
Statistics
Matches: 89, Mismatches: 23, Indels: 15
0.70 0.18 0.12
Matches are distributed among these distances:
42 36 0.40
43 27 0.30
44 26 0.29
ACGTcount: A:0.28, C:0.15, G:0.26, T:0.31
Consensus pattern (43 bp):
GATATGTGAGTTCATGTAAGACCACATCTGGGACAGTGGTATC
Found at i:25012823 original size:49 final size:51
Alignment explanation
Indices: 25012702--25012848 Score: 163
Period size: 49 Copynumber: 2.8 Consensus size: 51
25012692 ATTAGGGTTT
* * *
25012702 AAGGATACCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGG
1 AAGGATACCATGTAAGACCATGACAAGACATGGCAA-TGGTAA-GCTTCTAA-G
* * * *
25012756 CGAGGAAATCATGTAAGACCATGTCAAGACATGGCAATGGTAAGCTTC-AA-
1 -AAGGATACCATGTAAGACCATGACAAGACATGGCAATGGTAAGCTTCTAAG
* *
25012806 AAGGATACCACGTAAGACCATGACAAGTCATGGCAATGGTAAG
1 AAGGATACCATGTAAGACCATGACAAGACATGGCAATGGTAAG
25012849 GTACCCGCGT
Statistics
Matches: 80, Mismatches: 12, Indels: 6
0.82 0.12 0.06
Matches are distributed among these distances:
49 37 0.46
52 2 0.03
53 4 0.05
54 6 0.08
55 31 0.39
ACGTcount: A:0.37, C:0.18, G:0.26, T:0.20
Consensus pattern (51 bp):
AAGGATACCATGTAAGACCATGACAAGACATGGCAATGGTAAGCTTCTAAG
Found at i:25013061 original size:16 final size:16
Alignment explanation
Indices: 25013040--25013070 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
25013030 ATAAATTTGA
25013040 TTAAGTAAGTAAGTAT
1 TTAAGTAAGTAAGTAT
*
25013056 TTAAGTAAGTGAGTA
1 TTAAGTAAGTAAGTA
25013071 AGTGAAGAAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.42, C:0.00, G:0.23, T:0.35
Consensus pattern (16 bp):
TTAAGTAAGTAAGTAT
Found at i:25020300 original size:55 final size:53
Alignment explanation
Indices: 25020192--25020399 Score: 240
Period size: 55 Copynumber: 3.8 Consensus size: 53
25020182 ATTAGGGTTT
* *
25020192 AAGGATACCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGCTTC-TAAGGC
1 AAGGATACCATGTAAGACCATGTCAAGACATGGC-ATTGGTAA-G-TTCATAAGGC
* * * *
25020247 AAGGAAATCATGTAAGACCATGTCAAGACATTGCATTGATAAGTTACTATAAGGC
1 AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGGTAAGTT-C-ATAAGGC
* * * * *
25020302 AAAGG-TCCCATGTAAGACCATGCCAAGGCACGGCATTGGTGAGTTCATAAGGC
1 -AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGGTAAGTTCATAAGGC
*
25020355 AAGGATACCATGTAAGACCATGTCAAGACATGGCAATGGTAAGTT
1 AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGGTAAGTT
25020400 TCAAAAGGAT
Statistics
Matches: 127, Mismatches: 21, Indels: 12
0.79 0.13 0.08
Matches are distributed among these distances:
52 6 0.05
53 43 0.34
54 8 0.06
55 66 0.52
56 4 0.03
ACGTcount: A:0.35, C:0.18, G:0.25, T:0.22
Consensus pattern (53 bp):
AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGGTAAGTTCATAAGGC
Found at i:25020398 original size:108 final size:110
Alignment explanation
Indices: 25020199--25020399 Score: 309
Period size: 108 Copynumber: 1.8 Consensus size: 110
25020189 TTTAAGGATA
* *
25020199 CCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGCTTCTAAGGCAAGGAAATCATGTAAGA
1 CCATGTAAGACCATGCCAAGGCACGGCAATTGGTAAGGCTTCTAAGGCAAGGAAACCATGTAAGA
* *
25020264 CCATGTCAAGACATTGCATTGATAAGTTACTATAAGGCAAAGGTC
66 CCATGTCAAGACATGGCAATGATAAGTTACTATAAGGCAAAGGTC
* *
25020309 CCATGTAAGACCATGCCAAGGCACGGC-ATTGGTGA-G-TTCATAAGGCAAGGATACCATGTAAG
1 CCATGTAAGACCATGCCAAGGCACGGCAATTGGTAAGGCTTC-TAAGGCAAGGAAACCATGTAAG
*
25020371 ACCATGTCAAGACATGGCAATGGTAAGTT
65 ACCATGTCAAGACATGGCAATGATAAGTT
25020400 TCAAAAGGAT
Statistics
Matches: 83, Mismatches: 7, Indels: 4
0.88 0.07 0.04
Matches are distributed among these distances:
107 3 0.04
108 47 0.57
109 7 0.08
110 26 0.31
ACGTcount: A:0.34, C:0.19, G:0.25, T:0.22
Consensus pattern (110 bp):
CCATGTAAGACCATGCCAAGGCACGGCAATTGGTAAGGCTTCTAAGGCAAGGAAACCATGTAAGA
CCATGTCAAGACATGGCAATGATAAGTTACTATAAGGCAAAGGTC
Found at i:25023138 original size:45 final size:45
Alignment explanation
Indices: 25023088--25023178 Score: 155
Period size: 45 Copynumber: 2.0 Consensus size: 45
25023078 CCAAAACATG
*
25023088 TGTCACATACATCATGAACCCAGACCATAACTCAATGAGTTCAGA
1 TGTCACATACATCATGAACCCAGACCACAACTCAATGAGTTCAGA
* *
25023133 TGTCACATATATCATGAACCCATACCACAACTCAATGAGTTCAGA
1 TGTCACATACATCATGAACCCAGACCACAACTCAATGAGTTCAGA
25023178 T
1 T
25023179 CACATAGTTC
Statistics
Matches: 43, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
45 43 1.00
ACGTcount: A:0.37, C:0.26, G:0.12, T:0.24
Consensus pattern (45 bp):
TGTCACATACATCATGAACCCAGACCACAACTCAATGAGTTCAGA
Found at i:25025702 original size:6 final size:6
Alignment explanation
Indices: 25025691--25025719 Score: 58
Period size: 6 Copynumber: 4.8 Consensus size: 6
25025681 TAGGTTCCAA
25025691 AAATGG AAATGG AAATGG AAATGG AAATG
1 AAATGG AAATGG AAATGG AAATGG AAATG
25025720 ATCCATTTAC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.31, T:0.17
Consensus pattern (6 bp):
AAATGG
Found at i:25026647 original size:50 final size:50
Alignment explanation
Indices: 25026551--25026645 Score: 183
Period size: 50 Copynumber: 1.9 Consensus size: 50
25026541 GGAATGTATG
25026551 TGAATGAATGTGATATTATATATATTTTTATATAATTATTATTTTTGACA
1 TGAATGAATGTGATATTATATATATTTTTATATAATTATTATTTTTGACA
25026601 TGAATGAATGTGATATTATATATA-TTTTATATAATTATTATTTTT
1 TGAATGAATGTGATATTATATATATTTTTATATAATTATTATTTTT
25026646 TGTCAAGGTT
Statistics
Matches: 45, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
49 21 0.47
50 24 0.53
ACGTcount: A:0.36, C:0.01, G:0.09, T:0.54
Consensus pattern (50 bp):
TGAATGAATGTGATATTATATATATTTTTATATAATTATTATTTTTGACA
Found at i:25028950 original size:43 final size:43
Alignment explanation
Indices: 25028902--25029056 Score: 147
Period size: 43 Copynumber: 3.6 Consensus size: 43
25028892 ATCAAGATGT
25028902 GATTACATGTAAGACCATGTCTGGGACATTGGCATTTCATTGA
1 GATTACATGTAAGACCATGTCTGGGACATTGGCATTTCATTGA
* * * *
25028945 GATTACGTATAAGACCATGTCTGGGACATTGGCATCGTT-AATCA
1 GATTACATGTAAGACCATGTCTGGGACATTGGCAT--TTCATTGA
* * * * *
25028989 -ATTTCGTGTAAGACCCTGTCTGGGACAGTGGCA--TCGATATGT
1 GATTACATGTAAGACCATGTCTGGGACATTGGCATTTC-AT-TGA
* *
25029031 GATAACATGTAAGACCATATCTGGGA
1 GATTACATGTAAGACCATGTCTGGGA
25029057 TACGGTATTG
Statistics
Matches: 90, Mismatches: 16, Indels: 12
0.76 0.14 0.10
Matches are distributed among these distances:
39 1 0.01
41 1 0.01
42 1 0.01
43 82 0.91
44 3 0.03
45 2 0.02
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (43 bp):
GATTACATGTAAGACCATGTCTGGGACATTGGCATTTCATTGA
Found at i:25041954 original size:40 final size:40
Alignment explanation
Indices: 25041899--25042109 Score: 239
Period size: 40 Copynumber: 5.3 Consensus size: 40
25041889 ATTTGAATGA
*
25041899 TATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTT
1 TATCCGGGCTAAGACCCGAAGGCATTTATGCTAGTGATTT
*
25041939 TATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTT
1 TATCCGGGCTAAGACCCGAAGGCATTTATGCTAGTGATTT
* * *
25041979 TATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGA-TA
1 TATCCGGGCTAAGACCCGAAGGCATTTATGCTAG-TGATTT
* * * *
25042019 TATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CTA
1 TATCCGGGCTAAGACCCGAAGGCATTTATGCTAG-TGATTT
* * * * * * *
25042059 TACCCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTA
1 TATCCGGGCTAAGACCCGAAGGCATTTATGCTAGTGATTT
25042099 TATCC-GGCTAA
1 TATCCGGGCTAA
25042110 ATTCCGAAGA
Statistics
Matches: 156, Mismatches: 12, Indels: 7
0.89 0.07 0.04
Matches are distributed among these distances:
39 7 0.04
40 146 0.94
41 3 0.02
ACGTcount: A:0.23, C:0.21, G:0.27, T:0.28
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCATTTATGCTAGTGATTT
Found at i:25048313 original size:13 final size:13
Alignment explanation
Indices: 25048274--25048313 Score: 53
Period size: 13 Copynumber: 3.1 Consensus size: 13
25048264 GCTCGGCAAG
25048274 GACACGCCCGTGT
1 GACACGCCCGTGT
* *
25048287 GACATGCTCGTGT
1 GACACGCCCGTGT
*
25048300 GACACGCCCTTGT
1 GACACGCCCGTGT
25048313 G
1 G
25048314 TGATTACTTT
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
13 22 1.00
ACGTcount: A:0.15, C:0.33, G:0.30, T:0.23
Consensus pattern (13 bp):
GACACGCCCGTGT
Found at i:25052375 original size:55 final size:56
Alignment explanation
Indices: 25052314--25052441 Score: 136
Period size: 55 Copynumber: 2.3 Consensus size: 56
25052304 CGTGTTAATC
* * * *
25052314 TAATAGGTTCGACCACGGGTTC-TAGACACTGGCGTGTCGCACGTCCGTGCTGTTT
1 TAATAGGTTCGACCACGGGTTCTTACACACGGGCGTGTCGCACGCCCATGCTGTTT
* * *
25052369 TAATAGGTTC-ACC-CATGGTTCTTCCACACGGGCGTGTCGCACGCCCATGTTGTTT
1 TAATAGGTTCGACCAC-GGGTTCTTACACACGGGCGTGTCGCACGCCCATGCTGTTT
***
25052424 TGGCAGGTTCGACCACGG
1 TAATAGGTTCGACCACGG
25052442 CCGTGTCACA
Statistics
Matches: 58, Mismatches: 11, Indels: 7
0.76 0.14 0.09
Matches are distributed among these distances:
53 1 0.02
54 8 0.14
55 44 0.76
56 4 0.07
57 1 0.02
ACGTcount: A:0.16, C:0.27, G:0.28, T:0.28
Consensus pattern (56 bp):
TAATAGGTTCGACCACGGGTTCTTACACACGGGCGTGTCGCACGCCCATGCTGTTT
Found at i:25056122 original size:19 final size:19
Alignment explanation
Indices: 25056068--25056132 Score: 79
Period size: 19 Copynumber: 3.7 Consensus size: 19
25056058 GGTCTATTCC
25056068 TCCTCTGAATAAGAGCTTA
1 TCCTCTGAATAAGAGCTTA
*
25056087 T-CT-TGAAT--CAG--TA
1 TCCTCTGAATAAGAGCTTA
25056100 TCCTCTGAATAAGAGCTTA
1 TCCTCTGAATAAGAGCTTA
25056119 TCCTCTGAATAAGA
1 TCCTCTGAATAAGA
25056133 CAAATTGGCG
Statistics
Matches: 38, Mismatches: 2, Indels: 12
0.73 0.04 0.23
Matches are distributed among these distances:
13 3 0.08
14 2 0.05
15 7 0.18
17 7 0.18
18 2 0.05
19 17 0.45
ACGTcount: A:0.32, C:0.20, G:0.15, T:0.32
Consensus pattern (19 bp):
TCCTCTGAATAAGAGCTTA
Found at i:25060060 original size:14 final size:13
Alignment explanation
Indices: 25060040--25060071 Score: 55
Period size: 14 Copynumber: 2.4 Consensus size: 13
25060030 AATATTTGAC
25060040 TTGTTCTTAATTA
1 TTGTTCTTAATTA
25060053 TATGTTCTTAATTA
1 T-TGTTCTTAATTA
25060067 TTGTT
1 TTGTT
25060072 TTGATATTCC
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 5 0.28
14 13 0.72
ACGTcount: A:0.22, C:0.06, G:0.09, T:0.62
Consensus pattern (13 bp):
TTGTTCTTAATTA
Found at i:25073934 original size:17 final size:17
Alignment explanation
Indices: 25073908--25073951 Score: 79
Period size: 17 Copynumber: 2.6 Consensus size: 17
25073898 AAATATATCA
*
25073908 TTTATCACATTAGACCT
1 TTTATAACATTAGACCT
25073925 TTTATAACATTAGACCT
1 TTTATAACATTAGACCT
25073942 TTTATAACAT
1 TTTATAACAT
25073952 CATGATACAT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
17 26 1.00
ACGTcount: A:0.34, C:0.18, G:0.05, T:0.43
Consensus pattern (17 bp):
TTTATAACATTAGACCT
Found at i:25076587 original size:49 final size:47
Alignment explanation
Indices: 25076518--25076660 Score: 169
Period size: 49 Copynumber: 3.0 Consensus size: 47
25076508 AAACAAAGTC
* *
25076518 ACATAATCACAAACCGATGCCATAGCCCAGATATGGTCTGATACGGAA
1 ACAT-ATCACAAACCGATGCCATATCCCAGATATGGTCTTATACGGAA
* * * **
25076566 TTACTTATCACATACCGATGCCATATCCTAGATATGGAATTATACGGAA
1 --ACATATCACAAACCGATGCCATATCCCAGATATGGTCTTATACGGAA
* *
25076615 ACATATAATCACACCGATGCCATATCCCAGATATGGTCTTATACGG
1 ACATATCA-CAAACCGATGCCATATCCCAGATATGGTCTTATACGG
25076661 GATCACATAA
Statistics
Matches: 79, Mismatches: 13, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
47 6 0.08
48 33 0.42
49 37 0.47
50 3 0.04
ACGTcount: A:0.35, C:0.24, G:0.16, T:0.25
Consensus pattern (47 bp):
ACATATCACAAACCGATGCCATATCCCAGATATGGTCTTATACGGAA
Found at i:25076647 original size:48 final size:49
Alignment explanation
Indices: 25076520--25076673 Score: 170
Period size: 48 Copynumber: 3.1 Consensus size: 49
25076510 ACAAAGTCAC
* * *
25076520 ATAATCACAAACCGATGCCATAGCCCAGATATGGTCTGATACGGAATTACTT
1 ATAATCAC--ACCGATGCCATATCCCAGATATGGTCTTATACGGAA-TACAT
* * * **
25076572 ATCA-CATACCGATGCCATATCCTAGATATGGAATTATACGGAA-ACAT
1 ATAATCACACCGATGCCATATCCCAGATATGGTCTTATACGGAATACAT
* *
25076619 ATAATCACACCGATGCCATATCCCAGATATGGTCTTATACGGGAT-CAC
1 ATAATCACACCGATGCCATATCCCAGATATGGTCTTATACGGAATACAT
25076667 ATAATCA
1 ATAATCA
25076674 TATAGTCATA
Statistics
Matches: 85, Mismatches: 15, Indels: 8
0.79 0.14 0.07
Matches are distributed among these distances:
47 6 0.07
48 43 0.51
49 31 0.36
51 2 0.02
52 3 0.04
ACGTcount: A:0.36, C:0.23, G:0.16, T:0.25
Consensus pattern (49 bp):
ATAATCACACCGATGCCATATCCCAGATATGGTCTTATACGGAATACAT
Found at i:25077623 original size:12 final size:12
Alignment explanation
Indices: 25077601--25077634 Score: 61
Period size: 12 Copynumber: 2.9 Consensus size: 12
25077591 ATTACCCTTT
25077601 TAATTTC-AAAC
1 TAATTTCAAAAC
25077612 TAATTTCAAAAC
1 TAATTTCAAAAC
25077624 TAATTTCAAAA
1 TAATTTCAAAA
25077635 ATACCAAACA
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
11 7 0.32
12 15 0.68
ACGTcount: A:0.50, C:0.15, G:0.00, T:0.35
Consensus pattern (12 bp):
TAATTTCAAAAC
Found at i:25083275 original size:48 final size:48
Alignment explanation
Indices: 25083076--25083279 Score: 213
Period size: 48 Copynumber: 4.3 Consensus size: 48
25083066 TTAAACAGAG
* * *
25083076 TCACATAATCACAAACCGATGCCATAGCCCAGCTATGGTCTTATATGGAA
1 TCACATAATCAC--ACCGATGCCATATCCCAGATATGGTCTTATACGGAA
*
25083126 TCACAT-TTCACAGACCGATGCCATATCCCAG--A--GTCTTAT-CGGAA
1 TCACATAATCAC--ACCGATGCCATATCCCAGATATGGTCTTATACGGAA
* * *
25083170 TCACATATTACATACAGATGCCATATCCCAGATATGGTCTTATACGGAA
1 TCACATAAT-CACACCGATGCCATATCCCAGATATGGTCTTATACGGAA
* * * * *
25083219 ACATATAATCACACTGATGCCATATCCCAGATATGGTCTTATATGGGA
1 TCACATAATCACACCGATGCCATATCCCAGATATGGTCTTATACGGAA
25083267 TCACATAATCACA
1 TCACATAATCACA
25083280 TATTCACATG
Statistics
Matches: 132, Mismatches: 15, Indels: 16
0.81 0.09 0.10
Matches are distributed among these distances:
44 27 0.20
45 9 0.07
46 3 0.02
47 1 0.01
48 53 0.40
49 33 0.25
50 6 0.05
ACGTcount: A:0.34, C:0.25, G:0.15, T:0.26
Consensus pattern (48 bp):
TCACATAATCACACCGATGCCATATCCCAGATATGGTCTTATACGGAA
Found at i:25086171 original size:34 final size:33
Alignment explanation
Indices: 25086133--25086216 Score: 89
Period size: 34 Copynumber: 2.5 Consensus size: 33
25086123 TTAGGGCCAT
* *
25086133 AGCCCATTTCAGAATCAAAAATAGTGTGGGCCTG
1 AGCCCATTACAGAATCAAAAATAGTG-GGGCCTA
* * * *
25086167 AGCCCAATCCAGTAA-CAATATTAGTGGGGCCTA
1 AGCCCATTACAG-AATCAAAAATAGTGGGGCCTA
25086200 AGCCCATTACAGAATCA
1 AGCCCATTACAGAATCA
25086217 GTGCAGTATA
Statistics
Matches: 41, Mismatches: 7, Indels: 5
0.77 0.13 0.09
Matches are distributed among these distances:
32 2 0.05
33 18 0.44
34 19 0.46
35 2 0.05
ACGTcount: A:0.35, C:0.24, G:0.20, T:0.21
Consensus pattern (33 bp):
AGCCCATTACAGAATCAAAAATAGTGGGGCCTA
Found at i:25091674 original size:11 final size:10
Alignment explanation
Indices: 25091614--25091677 Score: 51
Period size: 10 Copynumber: 6.4 Consensus size: 10
25091604 GGTTGGAGGT
25091614 AGGGAAGAAA
1 AGGGAAGAAA
*
25091624 ATGGAAGAAA
1 AGGGAAGAAA
25091634 AGAGG-AGAAA
1 AG-GGAAGAAA
* *
25091644 AAGAAAGAGAA
1 AGGGAAGA-AA
*
25091655 AAGGAAG-AA
1 AGGGAAGAAA
*
25091664 AGGGAAGAGA
1 AGGGAAGAAA
25091674 AGGG
1 AGGG
25091678 GGTCGGCCTA
Statistics
Matches: 43, Mismatches: 7, Indels: 8
0.74 0.12 0.14
Matches are distributed among these distances:
9 9 0.21
10 24 0.56
11 10 0.23
ACGTcount: A:0.59, C:0.00, G:0.39, T:0.02
Consensus pattern (10 bp):
AGGGAAGAAA
Found at i:25091728 original size:22 final size:21
Alignment explanation
Indices: 25091690--25091740 Score: 59
Period size: 22 Copynumber: 2.4 Consensus size: 21
25091680 TCGGCCTACG
* *
25091690 GGGGGAAGAAGATGAAAA-GAA
1 GGGGGAGGAAGAAGAAAATG-A
25091711 GGGGGAGGAAGGAAGAAAATGA
1 GGGGGAGGAA-GAAGAAAATGA
25091733 GGGGGAGG
1 GGGGGAGG
25091741 TTGCTACTGG
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
21 9 0.35
22 16 0.62
23 1 0.04
ACGTcount: A:0.43, C:0.00, G:0.53, T:0.04
Consensus pattern (21 bp):
GGGGGAGGAAGAAGAAAATGA
Found at i:25094981 original size:20 final size:19
Alignment explanation
Indices: 25094936--25094973 Score: 51
Period size: 20 Copynumber: 2.0 Consensus size: 19
25094926 GAGTGAAAGG
25094936 AACGAG-AAACGGGCCAAA
1 AACGAGAAAACGGGCCAAA
*
25094954 AACAGAGAAAATGGGCCAAA
1 AAC-GAGAAAACGGGCCAAA
25094974 GTACGAGATC
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
18 3 0.18
19 3 0.18
20 11 0.65
ACGTcount: A:0.53, C:0.18, G:0.26, T:0.03
Consensus pattern (19 bp):
AACGAGAAAACGGGCCAAA
Found at i:25097704 original size:30 final size:30
Alignment explanation
Indices: 25097651--25097707 Score: 78
Period size: 30 Copynumber: 1.9 Consensus size: 30
25097641 ATGGCCATGA
* *
25097651 CACACGGGCGTGTGGACTGCCCGTGTGCCT
1 CACACGGGCATGTGGACTACCCGTGTGCCT
**
25097681 CACACGGGCATGTGGTTTACCCGTGTG
1 CACACGGGCATGTGGACTACCCGTGTG
25097708 GAAGTGCCTA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
30 23 1.00
ACGTcount: A:0.12, C:0.30, G:0.35, T:0.23
Consensus pattern (30 bp):
CACACGGGCATGTGGACTACCCGTGTGCCT
Found at i:25104534 original size:28 final size:29
Alignment explanation
Indices: 25104476--25104537 Score: 81
Period size: 28 Copynumber: 2.2 Consensus size: 29
25104466 GAAAGCATGT
*
25104476 ATATGAATGTGATTTGGGCCTAATGGACC
1 ATATGAATGAGATTTGGGCCTAATGGACC
* * *
25104505 ATATGAATGAGA-TTGGTCCTAGTGGGCC
1 ATATGAATGAGATTTGGGCCTAATGGACC
25104533 ATATG
1 ATATG
25104538 CATGTATGTA
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
28 18 0.62
29 11 0.38
ACGTcount: A:0.27, C:0.13, G:0.29, T:0.31
Consensus pattern (29 bp):
ATATGAATGAGATTTGGGCCTAATGGACC
Found at i:25105682 original size:17 final size:18
Alignment explanation
Indices: 25105649--25105682 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
25105639 TTTAAGGAAG
25105649 GGTTTTCAATGAAAACAA
1 GGTTTTCAATGAAAACAA
25105667 GGTTTTCAAT-AAAACA
1 GGTTTTCAATGAAAACA
25105683 CTTCACTGTG
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.44, C:0.12, G:0.15, T:0.29
Consensus pattern (18 bp):
GGTTTTCAATGAAAACAA
Found at i:25108833 original size:23 final size:24
Alignment explanation
Indices: 25108783--25108964 Score: 97
Period size: 24 Copynumber: 7.6 Consensus size: 24
25108773 CTTGTAACGA
* *
25108783 GAAGCTCACACAGAGCCATTTCGG
1 GAAGCTCACAAAGAGCCATATCGG
*
25108807 GAAGCTCATAAAGAGCC-TATCGG
1 GAAGCTCACAAAGAGCCATATCGG
* * *** * *
25108830 GAAGATTA-TTCGGGCTATATAACGG
1 GAAGCTCACAAAGAGCCATAT--CGG
* *
25108855 GAAGCTCA-TAACAGCCATAATCGG
1 GAAGCTCACAAAGAGCCAT-ATCGG
* *
25108879 GAAGTTCACAAAGAACCATATCGG
1 GAAGCTCACAAAGAGCCATATCGG
* *
25108903 GAAGCTC-CAGATAGCCAATATCGG
1 GAAGCTCACAAAGAGCC-ATATCGG
* ** *
25108927 GAAGTTCA-AGCG-GGCACTATCGG
1 GAAGCTCACAAAGAGCCA-TATCGG
25108950 GAAGCTCACAAAGAG
1 GAAGCTCACAAAGAG
25108965 TCAATTAACT
Statistics
Matches: 116, Mismatches: 32, Indels: 19
0.69 0.19 0.11
Matches are distributed among these distances:
22 4 0.03
23 35 0.30
24 53 0.46
25 22 0.19
26 2 0.02
ACGTcount: A:0.35, C:0.22, G:0.26, T:0.18
Consensus pattern (24 bp):
GAAGCTCACAAAGAGCCATATCGG
Found at i:25119756 original size:46 final size:46
Alignment explanation
Indices: 25119689--25119863 Score: 187
Period size: 46 Copynumber: 3.8 Consensus size: 46
25119679 TGTAACCCGC
*
25119689 CCATAAGTGAACTCGGACTCAACTCAATGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
*
25119735 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG--G-C--GTTCGCAT
* * * ** *
25119785 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGAACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
* *
25119828 CCATAAGTGAACTCAGACTCAACTCAACGAGTTCGG
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG
25119864 ATGCTCAACC
Statistics
Matches: 107, Mismatches: 13, Indels: 18
0.78 0.09 0.13
Matches are distributed among these distances:
42 2 0.02
43 3 0.03
44 2 0.02
45 2 0.02
46 61 0.57
47 26 0.24
48 3 0.03
49 2 0.02
50 3 0.03
51 3 0.03
ACGTcount: A:0.30, C:0.29, G:0.20, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
Found at i:25119825 original size:93 final size:93
Alignment explanation
Indices: 25119697--25119867 Score: 279
Period size: 93 Copynumber: 1.8 Consensus size: 93
25119687 GCCCATAAGT
* ** * *
25119697 GAACTCGGACTCAACTCAATGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGAACATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
25119762 CGAGCTCGGATGCCTAGTTACATCTCAC
66 CGAGCTCGGATGCCTAGTTACATCTCAC
*
25119790 GAACTCGGACTCAACTCAACGAGTTCGAACATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGAACATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
*
25119855 CGAGTTCGGATGC
66 CGAGCTCGGATGC
25119868 TCAACCATCC
Statistics
Matches: 71, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 71 1.00
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGAACATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
CGAGCTCGGATGCCTAGTTACATCTCAC
Found at i:25119883 original size:46 final size:44
Alignment explanation
Indices: 25119694--25119883 Score: 118
Period size: 46 Copynumber: 4.1 Consensus size: 44
25119684 CCCGCCCATA
* * * * * *
25119694 AGTGAACTCGGACTCAACTCAATGAGCTCGGGCGTTCGCATCCAT-A
1 AGTGAACTCGGACTCAACTCAACGAGTTC-GG-ATGC-CAACCATCT
*
25119740 AGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTA-CATCT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCC-A---ACCATCT
* * * * *
25119787 CA-CGAACTCGGACTCAACTCAACGAGTTCGAACATTCGCATCCAT-A
1 -AGTGAACTCGGACTCAACTCAACGAGTTCG--GATGC-CAACCATCT
*
25119833 AGTGAACTCAGACTCAACTCAACGAGTTCGGATGCTCAACCATCCT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGC-CAACCAT-CT
25119879 AGTGA
1 AGTGA
25119884 CATGTCACTT
Statistics
Matches: 113, Mismatches: 18, Indels: 26
0.72 0.11 0.17
Matches are distributed among these distances:
43 1 0.01
44 12 0.11
45 3 0.03
46 62 0.55
47 29 0.26
48 1 0.01
49 4 0.04
50 1 0.01
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.22
Consensus pattern (44 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCAACCATCT
Found at i:25120455 original size:20 final size:18
Alignment explanation
Indices: 25120421--25120457 Score: 56
Period size: 20 Copynumber: 1.9 Consensus size: 18
25120411 GCAACTCATA
25120421 ATTTCAACTATTTTACAC
1 ATTTCAACTATTTTACAC
25120439 ATTTACAACTCATTTTACA
1 ATTT-CAACT-ATTTTACA
25120458 ACTTAGCAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 4 0.24
19 5 0.29
20 8 0.47
ACGTcount: A:0.35, C:0.22, G:0.00, T:0.43
Consensus pattern (18 bp):
ATTTCAACTATTTTACAC
Found at i:25125690 original size:24 final size:23
Alignment explanation
Indices: 25125663--25125710 Score: 69
Period size: 24 Copynumber: 2.0 Consensus size: 23
25125653 CATTATAATC
* *
25125663 AACTTTTCACCTTTCATATTCCTT
1 AACTCTTCACATTTCAT-TTCCTT
25125687 AACTCTTCACATTTCATTTCCTT
1 AACTCTTCACATTTCATTTCCTT
25125710 A
1 A
25125711 TAACCCCTTT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
23 7 0.32
24 15 0.68
ACGTcount: A:0.23, C:0.29, G:0.00, T:0.48
Consensus pattern (23 bp):
AACTCTTCACATTTCATTTCCTT
Found at i:25127258 original size:8 final size:8
Alignment explanation
Indices: 25127245--25127269 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
25127235 GATAGAACCA
25127245 TTTATTAT
1 TTTATTAT
25127253 TTTATTAT
1 TTTATTAT
25127261 TTTATTAT
1 TTTATTAT
25127269 T
1 T
25127270 CTGGTTGAAC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (8 bp):
TTTATTAT
Found at i:25129708 original size:41 final size:41
Alignment explanation
Indices: 25129663--25129744 Score: 137
Period size: 41 Copynumber: 2.0 Consensus size: 41
25129653 ATATTTTCCA
25129663 TCTAAGAATCTTTTGATGTATTGTATATGTTCCGATTGCTC
1 TCTAAGAATCTTTTGATGTATTGTATATGTTCCGATTGCTC
* * *
25129704 TCTAAGAATTTTTTGATGTGTTGTATATGTTTCGATTGCTC
1 TCTAAGAATCTTTTGATGTATTGTATATGTTCCGATTGCTC
25129745 CACAACAACA
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
41 38 1.00
ACGTcount: A:0.21, C:0.12, G:0.18, T:0.49
Consensus pattern (41 bp):
TCTAAGAATCTTTTGATGTATTGTATATGTTCCGATTGCTC
Found at i:25134562 original size:14 final size:15
Alignment explanation
Indices: 25134543--25134579 Score: 53
Period size: 13 Copynumber: 2.7 Consensus size: 15
25134533 CAGAAATGAC
25134543 AAGAGAAATTAGGG-
1 AAGAGAAATTAGGGA
25134557 AAGAG-AA-TAGGGA
1 AAGAGAAATTAGGGA
25134570 AAGAGAAATT
1 AAGAGAAATT
25134580 TGTGCAACAA
Statistics
Matches: 20, Mismatches: 0, Indels: 5
0.80 0.00 0.20
Matches are distributed among these distances:
12 5 0.25
13 7 0.35
14 7 0.35
15 1 0.05
ACGTcount: A:0.54, C:0.00, G:0.32, T:0.14
Consensus pattern (15 bp):
AAGAGAAATTAGGGA
Found at i:25137998 original size:18 final size:17
Alignment explanation
Indices: 25137975--25138017 Score: 50
Period size: 18 Copynumber: 2.5 Consensus size: 17
25137965 GGCCTAGAAT
*
25137975 CCCACACACCCGTGTGGG
1 CCCACACACCCGTGT-AG
* *
25137993 CCCACACGCTCGTGTAG
1 CCCACACACCCGTGTAG
25138010 CCCACACA
1 CCCACACA
25138018 GCCCAAAAGG
Statistics
Matches: 21, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
17 8 0.38
18 13 0.62
ACGTcount: A:0.21, C:0.47, G:0.21, T:0.12
Consensus pattern (17 bp):
CCCACACACCCGTGTAG
Found at i:25154844 original size:34 final size:35
Alignment explanation
Indices: 25154801--25154868 Score: 102
Period size: 35 Copynumber: 2.0 Consensus size: 35
25154791 TTCAATTTTG
*
25154801 GAAAGTGAT-AATTATAATTTAATAAATACATTTA
1 GAAAGTGATAAATTATAATTCAATAAATACATTTA
**
25154835 GAAAGTGATAAATTATAATTCAATGGATACATTT
1 GAAAGTGATAAATTATAATTCAATAAATACATTT
25154869 TCATGGGACA
Statistics
Matches: 30, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
34 9 0.30
35 21 0.70
ACGTcount: A:0.47, C:0.04, G:0.12, T:0.37
Consensus pattern (35 bp):
GAAAGTGATAAATTATAATTCAATAAATACATTTA
Found at i:25161611 original size:26 final size:26
Alignment explanation
Indices: 25161581--25161631 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
25161571 TCCTTATATT
*
25161581 TTAATATAATATAATT-TTATCATTAA
1 TTAATATAA-ATAATTAATATCATTAA
*
25161607 TTAATTTAAATAATTAATATCATTA
1 TTAATATAAATAATTAATATCATTA
25161632 TTATTTTAGT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
25 6 0.27
26 16 0.73
ACGTcount: A:0.47, C:0.04, G:0.00, T:0.49
Consensus pattern (26 bp):
TTAATATAAATAATTAATATCATTAA
Found at i:25166256 original size:21 final size:22
Alignment explanation
Indices: 25166214--25166261 Score: 57
Period size: 21 Copynumber: 2.3 Consensus size: 22
25166204 TTATAAAATT
*
25166214 TTATA-ATTTTTTCTATATATA
1 TTATATATTTTTTCTACATATA
*
25166235 TTATATATTTTTTTTACA-ATA
1 TTATATATTTTTTCTACATATA
25166256 TT-TATA
1 TTATATA
25166262 AAATTTTACA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
20 4 0.17
21 10 0.42
22 10 0.42
ACGTcount: A:0.33, C:0.04, G:0.00, T:0.62
Consensus pattern (22 bp):
TTATATATTTTTTCTACATATA
Found at i:25166260 original size:22 final size:20
Alignment explanation
Indices: 25166209--25166306 Score: 58
Period size: 19 Copynumber: 4.8 Consensus size: 20
25166199 TGACTTTATA
25166209 AAAT-TTTATAATTTTTTCT
1 AAATATTTATAATTTTTTCT
* *
25166228 ATATATATTATATATTTTTTTT
1 AAATAT-TTATA-ATTTTTTCT
* *
25166250 ACAATATTTATAAAATTTTAC-
1 A-AATATTTAT-AATTTTTTCT
* * *
25166271 AGATTTTTATAATTTTTTAT
1 AAATATTTATAATTTTTTCT
* *
25166291 -GATTTTTATAATTTTT
1 AAATATTTATAATTTTT
25166307 AATAAATTTT
Statistics
Matches: 62, Mismatches: 11, Indels: 12
0.73 0.13 0.14
Matches are distributed among these distances:
19 25 0.40
20 8 0.13
21 6 0.10
22 18 0.29
23 5 0.08
ACGTcount: A:0.34, C:0.03, G:0.02, T:0.61
Consensus pattern (20 bp):
AAATATTTATAATTTTTTCT
Found at i:25166268 original size:20 final size:20
Alignment explanation
Indices: 25166246--25166282 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
25166236 TATATATTTT
25166246 TTTTACA-ATATTTATAAAA
1 TTTTACAGATATTTATAAAA
*
25166265 TTTTACAGATTTTTATAA
1 TTTTACAGATATTTATAA
25166283 TTTTTTATGA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
19 7 0.44
20 9 0.56
ACGTcount: A:0.41, C:0.05, G:0.03, T:0.51
Consensus pattern (20 bp):
TTTTACAGATATTTATAAAA
Found at i:25166285 original size:9 final size:9
Alignment explanation
Indices: 25166245--25166328 Score: 62
Period size: 9 Copynumber: 8.8 Consensus size: 9
25166235 TTATATATTT
*
25166245 TTTTTACAA
1 TTTTTATAA
*
25166254 TATTTATAAA
1 TTTTTAT-AA
* *
25166264 ATTTTACAGA
1 TTTTTATA-A
25166274 TTTTTATAA
1 TTTTTATAA
*
25166283 TTTTTTATGA
1 -TTTTTATAA
25166293 TTTTTATAA
1 TTTTTATAA
25166302 TTTTTAATAAA
1 TTTTT-AT-AA
25166313 TTTTTA-ATA
1 TTTTTATA-A
25166322 TTTTTAT
1 TTTTTAT
25166329 TAAAATTTCA
Statistics
Matches: 59, Mismatches: 9, Indels: 13
0.73 0.11 0.16
Matches are distributed among these distances:
8 1 0.02
9 27 0.46
10 24 0.41
11 7 0.12
ACGTcount: A:0.35, C:0.02, G:0.02, T:0.61
Consensus pattern (9 bp):
TTTTTATAA
Found at i:25166287 original size:19 final size:19
Alignment explanation
Indices: 25166245--25166307 Score: 67
Period size: 19 Copynumber: 3.3 Consensus size: 19
25166235 TTATATATTT
*
25166245 TTTTTACA-ATATTTATAAA
1 TTTTTACAGATTTTTAT-AA
*
25166264 ATTTTACAGATTTTTATAA
1 TTTTTACAGATTTTTATAA
*
25166283 TTTTTTA-TGATTTTTATAA
1 -TTTTTACAGATTTTTATAA
25166302 TTTTTA
1 TTTTTA
25166308 ATAAATTTTT
Statistics
Matches: 38, Mismatches: 4, Indels: 5
0.81 0.09 0.11
Matches are distributed among these distances:
18 6 0.16
19 20 0.53
20 12 0.32
ACGTcount: A:0.33, C:0.03, G:0.03, T:0.60
Consensus pattern (19 bp):
TTTTTACAGATTTTTATAA
Found at i:25166315 original size:20 final size:20
Alignment explanation
Indices: 25166273--25166347 Score: 73
Period size: 20 Copynumber: 3.8 Consensus size: 20
25166263 AATTTTACAG
* *
25166273 ATTTTTATAATTTTTTAT-G
1 ATTTTTATAATTTTTAATAA
25166292 ATTTTTATAATTTTTAATAA
1 ATTTTTATAATTTTTAATAA
*
25166312 ATTTTTA-ATATTTTTATTAA
1 ATTTTTATA-ATTTTTAATAA
* * *
25166332 AATTTCATCATTTTTA
1 ATTTTTATAATTTTTA
25166348 TATTTTTTTA
Statistics
Matches: 47, Mismatches: 6, Indels: 5
0.81 0.10 0.09
Matches are distributed among these distances:
19 18 0.38
20 29 0.62
ACGTcount: A:0.33, C:0.03, G:0.01, T:0.63
Consensus pattern (20 bp):
ATTTTTATAATTTTTAATAA
Found at i:25166316 original size:19 final size:19
Alignment explanation
Indices: 25166275--25166325 Score: 59
Period size: 19 Copynumber: 2.7 Consensus size: 19
25166265 TTTTACAGAT
* * *
25166275 TTTTATAATTTTTTATGAT
1 TTTTATAATTTTTAATAAA
25166294 TTTTATAATTTTTAATAAA
1 TTTTATAATTTTTAATAAA
25166313 TTTT-TAATATTTT
1 TTTTATAAT-TTTT
25166326 TATTAAAATT
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
18 4 0.14
19 24 0.86
ACGTcount: A:0.31, C:0.00, G:0.02, T:0.67
Consensus pattern (19 bp):
TTTTATAATTTTTAATAAA
Found at i:25170056 original size:135 final size:134
Alignment explanation
Indices: 25169880--25170221 Score: 429
Period size: 135 Copynumber: 2.5 Consensus size: 134
25169870 TGTTCAGTAG
25169880 AGATAAGATCTGATATATTTAGCCTGCTTCACTCCTGCTCAGTGAAGATAAGTCTGATGATTGGA
1 AGATAAGATCTGATATATTTAGCCTGCTTCACTCCTGCTCAGTGAAGATAAG-CTGATGATTGGA
* *
25169945 ATCTGCTCCATCGCTAG-TACAGGGAGATAAGATTCACCAAAATTCGATCTAC-TCTGCTCCTGC
65 ATCTGCTCCATCGC-AGATACAGGGAGATAAGACTCACCAAAATTCGATCTACTTC-ACTCCTGC
25170008 TCAGCGA
128 TCAGCGA
* * * *
25170015 AGATAAGATCTGCTATACTTAGCCTGCTTCACTCCTACTCAGTGAAGATAAGGCTGATGATTAGA
1 AGATAAGATCTGATATATTTAGCCTGCTTCACTCCTGCTCAGTGAAGATAA-GCTGATGATTGGA
* * * * * * *
25170080 ATCTGCTCCATTGCCGATACATGGAGATAAGACTCGCCAAAATTTGATCTGCTTCACTCCTGTTC
65 ATCTGCTCCATCGCAGATACAGGGAGATAAGACTCACCAAAATTCGATCTACTTCACTCCTGCTC
*
25170145 AGTGA
130 AGCGA
* * * * ** *
25170150 AGAAAAGATCGGGTAT-TTTAGCCTGCTCCACTCCTGCTCAGTGAAGATAAAGCTGATGGCTGAA
1 AGATAAGATCTGATATATTTAGCCTGCTTCACTCCTGCTCAGTGAAGAT-AAGCTGATGATTGGA
25170214 ATCTGCTC
65 ATCTGCTC
25170222 TACTCCTGCT
Statistics
Matches: 179, Mismatches: 24, Indels: 9
0.84 0.11 0.04
Matches are distributed among these distances:
134 47 0.26
135 129 0.72
136 3 0.02
ACGTcount: A:0.28, C:0.23, G:0.20, T:0.29
Consensus pattern (134 bp):
AGATAAGATCTGATATATTTAGCCTGCTTCACTCCTGCTCAGTGAAGATAAGCTGATGATTGGAA
TCTGCTCCATCGCAGATACAGGGAGATAAGACTCACCAAAATTCGATCTACTTCACTCCTGCTCA
GCGA
Found at i:25170191 original size:44 final size:44
Alignment explanation
Indices: 25170127--25170379 Score: 170
Period size: 44 Copynumber: 5.7 Consensus size: 44
25170117 CAAAATTTGA
* * * *
25170127 TCTGCTTCACTCCTGTTCAGTGAAGAAAAGATCGGGTATTTTAG
1 TCTGCTCCACTCCTGCTCAGTGAAGATAAGATCGGGTACTTTAG
* * * * * ** *
25170171 CCTGCTCCACTCCTGCTCAGTGAAGATAA-AGCTGATGGCTGAAA
1 TCTGCTCCACTCCTGCTCAGTGAAGATAAGATCGGGT-ACTTTAG
* * * ** *
25170215 TCTGCTCTACTCCTGCTCAGTGAAGATAAGA-CTGGTGGCTGAAA
1 TCTGCTCCACTCCTGCTCAGTGAAGATAAGATCGGGT-ACTTTAG
*** *
25170259 TCTGCTCCACTCCTGCTCAGTGAAGATAAGACTCGCCAAAATTT-G
1 TCTGCTCCACTCCTGCTCAGTGAAGATAAGA-TCG-GGTACTTTAG
* * *
25170304 ATCTGCTTCACTCCTGCTCAATGAAGATAAGATCGGGTATGTTTAG
1 -TCTGCTCCACTCCTGCTCAGTGAAGATAAGATCGGGTA-CTTTAG
* * * *
25170350 CCCGCTTCACTCCTACTCAGTGAAGATAAG
1 TCTGCTCCACTCCTGCTCAGTGAAGATAAG
25170380 GCTGATGATA
Statistics
Matches: 166, Mismatches: 35, Indels: 15
0.77 0.16 0.07
Matches are distributed among these distances:
43 4 0.02
44 97 0.58
45 33 0.20
46 32 0.19
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (44 bp):
TCTGCTCCACTCCTGCTCAGTGAAGATAAGATCGGGTACTTTAG
Found at i:25170240 original size:88 final size:89
Alignment explanation
Indices: 25170126--25170386 Score: 248
Period size: 88 Copynumber: 2.9 Consensus size: 89
25170116 CCAAAATTTG
* *
25170126 ATCTGCT-TCACTCCTGTTCAGTGAAGAAAAGATCGGGTATTTTAGCCTGCTCCACTCCTGCTCA
1 ATCTGCTCTCACTCCTGCTCAGTGAAGATAAGATCGGGTATTTTAGCCTGCTCCACTCCTGCTCA
**
25170190 GTGAAGATAAAGCTGATGGCTGAA
66 GTGAAGATAAAGCTGATGGCCAAA
* ** ** **
25170214 ATCTGCTCT-ACTCCTGCTCAGTGAAGATAAGA-CTGGTGGCTGAAATCTGCTCCACTCCTGCTC
1 ATCTGCTCTCACTCCTGCTCAGTGAAGATAAGATCGGGT-ATTTTAGCCTGCTCCACTCCTGCTC
*
25170277 AGTGAAGAT-AA---GACTCGCCAAA
65 AGTGAAGATAAAGCTGA-TGGCCAAA
* * * *
25170299 ATTTGATCTGCTTCACTCCTGCTCAATGAAGATAAGATCGGGTATGTTTAGCCCGCTTCACTCCT
1 ATCTG--CT-C-TCACTCCTGCTCAGTGAAGATAAGATCGGGTAT-TTTAGCCTGCTCCACTCCT
* *
25170364 ACTCAGTGAAGATAAGGCTGATG
61 GCTCAGTGAAGATAAAGCTGATG
25170387 ATATCTGTCT
Statistics
Matches: 133, Mismatches: 26, Indels: 22
0.73 0.14 0.12
Matches are distributed among these distances:
84 2 0.02
85 9 0.07
87 8 0.06
88 57 0.43
89 2 0.02
90 22 0.17
91 29 0.22
92 1 0.01
94 1 0.01
95 2 0.02
ACGTcount: A:0.26, C:0.24, G:0.22, T:0.28
Consensus pattern (89 bp):
ATCTGCTCTCACTCCTGCTCAGTGAAGATAAGATCGGGTATTTTAGCCTGCTCCACTCCTGCTCA
GTGAAGATAAAGCTGATGGCCAAA
Found at i:25170267 original size:178 final size:179
Alignment explanation
Indices: 25170045--25170386 Score: 494
Period size: 178 Copynumber: 1.9 Consensus size: 179
25170035 AGCCTGCTTC
* * * *
25170045 ACTCCTACTCAGTGAAGATAAGGCTGATGATTAGAATCTGCTCCATTGCC-GATACA-TGGAGAT
1 ACTCCTACTCAGTGAAGATAAGACTGATGATGAGAATCTGCTCCACT-CCTGAT-CAGTGAAGAT
* *
25170108 AAGACTCGCCAAAATTTGATCTGCTTCACTCCTGTTCAGTGAAGAAAAGATCGGGTAT-TTTAGC
64 AAGACTCGCCAAAATTTGATCTGCTTCACTCCTGCTCAATGAAGAAAAGATCGGGTATGTTTAGC
* *
25170172 CTGCTCCACTCCTGCTCAGTGAAGATAAAGCTGATGGCTGAAATCTGCTCT
129 CCGCTCCACTCCTACTCAGTGAAGATAAAGCTGATGGCTGAAATCTGCTCT
* * * *
25170223 ACTCCTGCTCAGTGAAGATAAGACTGGTGGCTGA-AATCTGCTCCACTCCTGCTCAGTGAAGATA
1 ACTCCTACTCAGTGAAGATAAGACTGAT-GATGAGAATCTGCTCCACTCCTGATCAGTGAAGATA
*
25170287 AGACTCGCCAAAATTTGATCTGCTTCACTCCTGCTCAATGAAGATAAGATCGGGTATGTTTAGCC
65 AGACTCGCCAAAATTTGATCTGCTTCACTCCTGCTCAATGAAGAAAAGATCGGGTATGTTTAGCC
* *
25170352 CGCTTCACTCCTACTCAGTGAAGATAAGGCTGATG
130 CGCTCCACTCCTACTCAGTGAAGATAAAGCTGATG
25170387 ATATCTGTCT
Statistics
Matches: 145, Mismatches: 15, Indels: 7
0.87 0.09 0.04
Matches are distributed among these distances:
177 4 0.03
178 100 0.69
179 41 0.28
ACGTcount: A:0.27, C:0.23, G:0.22, T:0.27
Consensus pattern (179 bp):
ACTCCTACTCAGTGAAGATAAGACTGATGATGAGAATCTGCTCCACTCCTGATCAGTGAAGATAA
GACTCGCCAAAATTTGATCTGCTTCACTCCTGCTCAATGAAGAAAAGATCGGGTATGTTTAGCCC
GCTCCACTCCTACTCAGTGAAGATAAAGCTGATGGCTGAAATCTGCTCT
Found at i:25175484 original size:47 final size:47
Alignment explanation
Indices: 25175429--25176198 Score: 1290
Period size: 47 Copynumber: 16.4 Consensus size: 47
25175419 GATGTACAAG
25175429 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
1 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
* *
25175476 GTGTATATATGTGATAAGGCCTAATGGCCAATGTGAGGAATGTGAAA
1 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
25175523 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
1 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
*
25175570 GTGTGTATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
1 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
* *
25175617 GTGTATATATGTGATAAGGCCTAATGGCCAATGTGAGGAATGTGAAA
1 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
*
25175664 GTGTATATATGTGATAAGGCCGAATGGCCAATATGATGAATGTGAAA
1 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
* * *
25175711 GTGTGTATATGTGATAAGGCTGAATGGCCAATGTGAGGAATGTGAAA
1 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
*
25175758 GTGTGTATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
1 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
*
25175805 GTGTGTATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
1 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
*
25175852 GTGTGTATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
1 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
* *
25175899 GTGTGTATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAA
1 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
* *
25175946 GTGTGTATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAA
1 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
* *
25175993 GTGTGTATATGTGATAAGGCCGAATGGCCGATGTGATGAATGTGAAA
1 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
25176040 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
1 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
* * * * *
25176087 GTGTATATATGAGATAAGACCTG-ATGGCCGATGTGATGGATGTGAAG
1 GTGTATATATGTGATAAGGCC-GAATGGCCAATGTGATGAATGTGAAA
* *
25176134 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGGATATGAAA
1 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
*
25176181 GTGTATAAATGTGATAAG
1 GTGTATATATGTGATAAG
25176199 TCCCGAAGGG
Statistics
Matches: 688, Mismatches: 33, Indels: 4
0.95 0.05 0.01
Matches are distributed among these distances:
46 1 0.00
47 686 1.00
48 1 0.00
ACGTcount: A:0.33, C:0.08, G:0.31, T:0.28
Consensus pattern (47 bp):
GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
Found at i:25175558 original size:22 final size:22
Alignment explanation
Indices: 25175531--25175606 Score: 66
Period size: 22 Copynumber: 3.3 Consensus size: 22
25175521 AAGTGTATAT
25175531 ATGTGATAAGGCCGAATGGCCA
1 ATGTGATAAGGCCGAATGGCCA
* * *
25175553 ATGTGATGAATG-TGAAAGTGTG-TA
1 ATGTGAT-AAGGCCG-AA-TG-GCCA
25175577 TATGTGATAAGGCCGAATGGCCA
1 -ATGTGATAAGGCCGAATGGCCA
25175600 ATGTGAT
1 ATGTGAT
25175607 GAATGTGAAA
Statistics
Matches: 41, Mismatches: 6, Indels: 14
0.67 0.10 0.23
Matches are distributed among these distances:
22 16 0.39
23 8 0.20
24 8 0.20
25 9 0.22
ACGTcount: A:0.32, C:0.11, G:0.32, T:0.26
Consensus pattern (22 bp):
ATGTGATAAGGCCGAATGGCCA
Found at i:25182542 original size:20 final size:20
Alignment explanation
Indices: 25182519--25182567 Score: 62
Period size: 20 Copynumber: 2.4 Consensus size: 20
25182509 TGTTAGCTGG
* *
25182519 CTCATCATGTTGTTCTGTGA
1 CTCAGCATGTTGTTCTGGGA
*
25182539 CTCAGCATGTTTTTCTGGGA
1 CTCAGCATGTTGTTCTGGGA
25182559 CTCTAGCAT
1 CTC-AGCAT
25182568 TTGATCCTTC
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
20 20 0.80
21 5 0.20
ACGTcount: A:0.16, C:0.22, G:0.20, T:0.41
Consensus pattern (20 bp):
CTCAGCATGTTGTTCTGGGA
Found at i:25190400 original size:3 final size:3
Alignment explanation
Indices: 25190392--25190445 Score: 108
Period size: 3 Copynumber: 18.0 Consensus size: 3
25190382 TATGGTCCAT
25190392 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
25190440 TAA TAA
1 TAA TAA
25190446 AAGAGATAAA
Statistics
Matches: 51, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 51 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:25191937 original size:13 final size:13
Alignment explanation
Indices: 25191921--25191965 Score: 51
Period size: 13 Copynumber: 3.6 Consensus size: 13
25191911 TTATTTTGTT
25191921 TTATTTAGTTTTA
1 TTATTTAGTTTTA
*
25191934 TTATTTATTTTTA
1 TTATTTAGTTTTA
25191947 -T-TTTA-TTTTA
1 TTATTTAGTTTTA
25191957 TTAATTTAG
1 TT-ATTTAG
25191966 AATTAGACTA
Statistics
Matches: 27, Mismatches: 1, Indels: 7
0.77 0.03 0.20
Matches are distributed among these distances:
10 5 0.19
11 5 0.19
12 1 0.04
13 16 0.59
ACGTcount: A:0.24, C:0.00, G:0.04, T:0.71
Consensus pattern (13 bp):
TTATTTAGTTTTA
Found at i:25191938 original size:23 final size:23
Alignment explanation
Indices: 25191909--25191964 Score: 71
Period size: 23 Copynumber: 2.4 Consensus size: 23
25191899 AAATAGAAGA
25191909 TATTATTT-TGTTTTA-TTTAGTTT
1 TATTATTTAT-TTTTATTTTA-TTT
25191932 TATTATTTATTTTTATTTTATTT
1 TATTATTTATTTTTATTTTATTT
25191955 TATTAATTTA
1 TATT-ATTTA
25191965 GAATTAGACT
Statistics
Matches: 30, Mismatches: 0, Indels: 5
0.86 0.00 0.14
Matches are distributed among these distances:
23 20 0.67
24 10 0.33
ACGTcount: A:0.23, C:0.00, G:0.04, T:0.73
Consensus pattern (23 bp):
TATTATTTATTTTTATTTTATTT
Found at i:25198485 original size:47 final size:47
Alignment explanation
Indices: 25198434--25198867 Score: 643
Period size: 47 Copynumber: 9.1 Consensus size: 47
25198424 TTAGGATTTT
*
25198434 ATGTGATGGATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
***
25198481 ATGTGATGAATGTGAACCCGTATATATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAA--C--ATGCGTATGTGTGATAAGGCCGAATGGCCA
25198532 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
* *
25198579 CTGTGATGGATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
***
25198626 ATGTGATGAATGTGAACCCGTATATATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAA--C--ATGCGTATGTGTGATAAGGCCGAATGGCCA
25198677 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
*
25198724 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCAAATGGCCA
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
* *
25198771 ATGTGATGAATGTGAACATGCGTATATGAGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
** * * *
25198818 ATGTGATGAATGTGAACATGAATATATGTGGTAAGGCCGAATGGCTA
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
25198865 ATG
1 ATG
25198868 CGAAATGTGT
Statistics
Matches: 353, Mismatches: 26, Indels: 16
0.89 0.07 0.04
Matches are distributed among these distances:
47 263 0.75
49 4 0.01
51 86 0.24
ACGTcount: A:0.31, C:0.13, G:0.31, T:0.26
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
Found at i:25198584 original size:145 final size:145
Alignment explanation
Indices: 25198434--25198867 Score: 723
Period size: 145 Copynumber: 3.0 Consensus size: 145
25198424 TTAGGATTTT
25198434 ATGTGATGGATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACC
1 ATGTGATGGATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACC
25198499 CGTATATATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCGTATGTGTGAT
66 CGTATATATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCGTATGTGTGAT
25198564 AAGGCCGAATGGCCA
131 AAGGCCGAATGGCCA
*
25198579 CTGTGATGGATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACC
1 ATGTGATGGATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACC
25198644 CGTATATATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCGTATGTGTGAT
66 CGTATATATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCGTATGTGTGAT
25198709 AAGGCCGAATGGCCA
131 AAGGCCGAATGGCCA
* *
25198724 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCAAATGGCCAATGTGATGAATGTGAA--
1 ATGTGATGGATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACC
*** * * ** * *
25198787 C--ATGCGTATATGAGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGAATATATGTGGT
66 CGTATATATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCGTATGTGTGAT
*
25198850 AAGGCCGAATGGCTA
131 AAGGCCGAATGGCCA
25198865 ATG
1 ATG
25198868 CGAAATGTGT
Statistics
Matches: 275, Mismatches: 14, Indels: 4
0.94 0.05 0.01
Matches are distributed among these distances:
141 70 0.25
143 1 0.00
145 204 0.74
ACGTcount: A:0.31, C:0.13, G:0.31, T:0.26
Consensus pattern (145 bp):
ATGTGATGGATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACC
CGTATATATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCGTATGTGTGAT
AAGGCCGAATGGCCA
Found at i:25198681 original size:24 final size:24
Alignment explanation
Indices: 25198653--25198728 Score: 61
Period size: 24 Copynumber: 3.2 Consensus size: 24
25198643 CCGTATATAT
25198653 ATGTGTGATAAGGCCGAATGGCCA
1 ATGTGTGATAAGGCCGAATGGCCA
* * **
25198677 ATGTGATGA-ATGTG--AACAT-GCGT
1 ATGTG-TGATAAG-GCCGA-ATGGCCA
25198700 ATGTGTGATAAGGCCGAATGGCCA
1 ATGTGTGATAAGGCCGAATGGCCA
25198724 ATGTG
1 ATGTG
25198729 ATGAATGTGA
Statistics
Matches: 37, Mismatches: 8, Indels: 14
0.63 0.14 0.24
Matches are distributed among these distances:
22 4 0.11
23 12 0.32
24 17 0.46
25 4 0.11
ACGTcount: A:0.29, C:0.13, G:0.33, T:0.25
Consensus pattern (24 bp):
ATGTGTGATAAGGCCGAATGGCCA
Found at i:25198911 original size:46 final size:46
Alignment explanation
Indices: 25198841--25198931 Score: 119
Period size: 46 Copynumber: 2.0 Consensus size: 46
25198831 GAACATGAAT
* * * * *
25198841 ATATGTGGTAAGGCCGAATGGCTAATGCGAAATGTGTATGAGATGG
1 ATATGTGGTAAAGCCAAATAGCTAATGCGAAATATGTACGAGATGG
* *
25198887 ATATGTGGTAAAGCCAAATAGCTAATGTGAGATATGTACGAGATG
1 ATATGTGGTAAAGCCAAATAGCTAATGCGAAATATGTACGAGATG
25198932 TGTATATATA
Statistics
Matches: 38, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
46 38 1.00
ACGTcount: A:0.34, C:0.09, G:0.31, T:0.26
Consensus pattern (46 bp):
ATATGTGGTAAAGCCAAATAGCTAATGCGAAATATGTACGAGATGG
Found at i:25199126 original size:37 final size:37
Alignment explanation
Indices: 25199076--25199247 Score: 247
Period size: 37 Copynumber: 4.9 Consensus size: 37
25199066 GGAAATATAT
25199076 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
25199113 TCCGGGTAAGACCCGATGACTACGTGTGGAG---A--
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
25199145 T-----TAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
25199177 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* * *
25199214 TCCGGGTAAGACCCGATAACTTCATGTGGAGATT
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATT
25199248 TCGTCTGAGC
Statistics
Matches: 122, Mismatches: 3, Indels: 20
0.84 0.02 0.14
Matches are distributed among these distances:
27 25 0.20
30 1 0.01
32 2 0.02
34 1 0.01
37 93 0.76
ACGTcount: A:0.26, C:0.19, G:0.31, T:0.24
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:25199156 original size:64 final size:64
Alignment explanation
Indices: 25199082--25199211 Score: 260
Period size: 64 Copynumber: 2.0 Consensus size: 64
25199072 ATATTCCGGG
25199082 TAAGACCCGATGACTACGTGTGGAGATTATGTCCGGGTAAGACCCGATGACTACGTGTGGAGAT
1 TAAGACCCGATGACTACGTGTGGAGATTATGTCCGGGTAAGACCCGATGACTACGTGTGGAGAT
25199146 TAAGACCCGATGACTACGTGTGGAGATTATGTCCGGGTAAGACCCGATGACTACGTGTGGAGAT
1 TAAGACCCGATGACTACGTGTGGAGATTATGTCCGGGTAAGACCCGATGACTACGTGTGGAGAT
25199210 TA
1 TA
25199212 TGTCCGGGTA
Statistics
Matches: 66, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
64 66 1.00
ACGTcount: A:0.27, C:0.18, G:0.31, T:0.24
Consensus pattern (64 bp):
TAAGACCCGATGACTACGTGTGGAGATTATGTCCGGGTAAGACCCGATGACTACGTGTGGAGAT
Found at i:25199157 original size:27 final size:27
Alignment explanation
Indices: 25199119--25199174 Score: 112
Period size: 27 Copynumber: 2.1 Consensus size: 27
25199109 TATGTCCGGG
25199119 TAAGACCCGATGACTACGTGTGGAGAT
1 TAAGACCCGATGACTACGTGTGGAGAT
25199146 TAAGACCCGATGACTACGTGTGGAGAT
1 TAAGACCCGATGACTACGTGTGGAGAT
25199173 TA
1 TA
25199175 TGTCCGGGTA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 29 1.00
ACGTcount: A:0.30, C:0.18, G:0.29, T:0.23
Consensus pattern (27 bp):
TAAGACCCGATGACTACGTGTGGAGAT
Found at i:25202413 original size:41 final size:40
Alignment explanation
Indices: 25202286--25202428 Score: 173
Period size: 40 Copynumber: 3.5 Consensus size: 40
25202276 CTCGCACAAG
* * * * * *
25202286 GCCTTCGGGTCTTAACCCGGATATGGTCACTAGCATAAAT
1 GCCTTCGGGACTTAGCCCGGATGTAGTCGCTAGCACAAAT
25202326 GCCTTCGGGACTTAGCCCAGG-TGTAGTCGCTAGCACAAAT
1 GCCTTCGGGACTTAGCCC-GGATGTAGTCGCTAGCACAAAT
* *
25202366 GCCTTC-GGATCTTAGTCCGGATGTAGTCGCTTAGCACAAAA
1 GCCTTCGGGA-CTTAGCCCGGATGTAGTCGC-TAGCACAAAT
25202407 GCCTTCGGGACTTAGCCCGGAT
1 GCCTTCGGGACTTAGCCCGGAT
25202429 ATCATTCGAG
Statistics
Matches: 89, Mismatches: 9, Indels: 9
0.83 0.08 0.08
Matches are distributed among these distances:
39 5 0.06
40 53 0.60
41 28 0.31
42 3 0.03
ACGTcount: A:0.22, C:0.27, G:0.26, T:0.25
Consensus pattern (40 bp):
GCCTTCGGGACTTAGCCCGGATGTAGTCGCTAGCACAAAT
Found at i:25205761 original size:2 final size:2
Alignment explanation
Indices: 25205739--25205784 Score: 51
Period size: 2 Copynumber: 24.0 Consensus size: 2
25205729 AAAAAGGAAA
* * *
25205739 AT AT AC AT A- AT AT AC AT AT AT AT AT AT AT AT AT A- AA AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
25205779 AT AT AT
1 AT AT AT
25205785 GAGATATAAA
Statistics
Matches: 37, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
1 2 0.05
2 35 0.95
ACGTcount: A:0.54, C:0.04, G:0.00, T:0.41
Consensus pattern (2 bp):
AT
Found at i:25205778 original size:19 final size:19
Alignment explanation
Indices: 25205756--25205804 Score: 64
Period size: 19 Copynumber: 2.6 Consensus size: 19
25205746 TAATATACAT
*
25205756 ATATATATATATATATAAA
1 ATATATATATAGATATAAA
25205775 ATATATATATGAGATATAAA
1 ATATATATAT-AGATATAAA
*
25205795 A-ATGTATATA
1 ATATATATATA
25205805 CATGGTAAAA
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
18 1 0.04
19 17 0.63
20 9 0.33
ACGTcount: A:0.55, C:0.00, G:0.06, T:0.39
Consensus pattern (19 bp):
ATATATATATAGATATAAA
Found at i:25205796 original size:21 final size:21
Alignment explanation
Indices: 25205754--25205804 Score: 68
Period size: 21 Copynumber: 2.4 Consensus size: 21
25205744 CATAATATAC
*
25205754 ATATATATATATATATATAAA
1 ATATATATATAGATATATAAA
25205775 ATATATATATGAGATATA-AAA
1 ATATATATAT-AGATATATAAA
*
25205796 ATGTATATA
1 ATATATATA
25205805 CATGGTAAAA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
21 21 0.78
22 6 0.22
ACGTcount: A:0.55, C:0.00, G:0.06, T:0.39
Consensus pattern (21 bp):
ATATATATATAGATATATAAA
Found at i:25207376 original size:23 final size:23
Alignment explanation
Indices: 25207350--25207401 Score: 104
Period size: 23 Copynumber: 2.3 Consensus size: 23
25207340 TAGGTTTAAT
25207350 GTTTTGGGTAAATTGGGTTAGGG
1 GTTTTGGGTAAATTGGGTTAGGG
25207373 GTTTTGGGTAAATTGGGTTAGGG
1 GTTTTGGGTAAATTGGGTTAGGG
25207396 GTTTTG
1 GTTTTG
25207402 CGCCCAAAAT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 29 1.00
ACGTcount: A:0.15, C:0.00, G:0.42, T:0.42
Consensus pattern (23 bp):
GTTTTGGGTAAATTGGGTTAGGG
Found at i:25207874 original size:42 final size:42
Alignment explanation
Indices: 25207827--25207927 Score: 193
Period size: 42 Copynumber: 2.4 Consensus size: 42
25207817 TTCAACTTGT
25207827 TACCCTACTGCTTAGGGTTTAAGGTCTGTAAGTTTGGCTTAC
1 TACCCTACTGCTTAGGGTTTAAGGTCTGTAAGTTTGGCTTAC
25207869 TACCCTACTGCTTAGGGTTTAAGGTCTGTAAGTTTGGCTTAC
1 TACCCTACTGCTTAGGGTTTAAGGTCTGTAAGTTTGGCTTAC
*
25207911 TACCCTATTGCTTAGGG
1 TACCCTACTGCTTAGGG
25207928 GGTTGAGCCC
Statistics
Matches: 58, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
42 58 1.00
ACGTcount: A:0.19, C:0.20, G:0.24, T:0.38
Consensus pattern (42 bp):
TACCCTACTGCTTAGGGTTTAAGGTCTGTAAGTTTGGCTTAC
Found at i:25208091 original size:43 final size:43
Alignment explanation
Indices: 25207822--25208107 Score: 179
Period size: 42 Copynumber: 6.7 Consensus size: 43
25207812 GTGAATTCAA
* *
25207822 CTTGTTACCCTACTGCTTA-GGGTTTAAGGTCTGTAAGTTTGG
1 CTTGTTACCCTACTGCTTAGGGGGTTAAGGTCTGTAAATTTGG
** * *
25207864 CTTACTACCCTACTGCTTA-GGGTTTAAGGTCTGTAAGTTTGG
1 CTTGTTACCCTACTGCTTAGGGGGTTAAGGTCTGTAAATTTGG
** * * * ** * *
25207906 CTTACTACCCTATTGCTTAGGGGGTTGA-GCCCAT-CATCTTTG
1 CTTGTTACCCTACTGCTTAGGGGGTTAAGGTCTGTAAAT-TTGG
* * * ***
25207948 ATCTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATTCAA
1 CT-TGTTACCCTACTGCTTAGGGGGTTAAGGTCTGTAAATTTGG
* ** ** ** * *
25207992 CCTGCTTCACTGTAACT--TTAGGGGGACAAAATCTGTAATTTTCAG
1 CTTG-TT-ACCCT-ACTGCTTAGGGGGTTAAGGTCTGTAAATTT-GG
* * *
25208037 CCTATTACCCTACTGCTTAGGGGGTTAAGGTCTGCAAATTTGG
1 CTTGTTACCCTACTGCTTAGGGGGTTAAGGTCTGTAAATTTGG
25208080 CTTGTTACCCTACTGCTTAGGGGGTTAA
1 CTTGTTACCCTACTGCTTAGGGGGTTAA
25208108 AACCCTTTGA
Statistics
Matches: 185, Mismatches: 48, Indels: 21
0.73 0.19 0.08
Matches are distributed among these distances:
41 1 0.01
42 68 0.37
43 59 0.32
44 46 0.25
45 8 0.04
46 3 0.02
ACGTcount: A:0.21, C:0.20, G:0.23, T:0.36
Consensus pattern (43 bp):
CTTGTTACCCTACTGCTTAGGGGGTTAAGGTCTGTAAATTTGG
Found at i:25208172 original size:43 final size:42
Alignment explanation
Indices: 25207824--25208172 Score: 150
Period size: 43 Copynumber: 8.1 Consensus size: 42
25207814 GAATTCAACT
* *
25207824 TGTTACCCTACTGCTTA-GGGTTTAAGGTCTGTAAGTTTGGCT
1 TGTTACCCTACTGCTTAGGGGTTTAAGGTCTGTAA-TTTAGCC
** * *
25207866 TACTACCCTACTGCTTA-GGGTTTAAGGTCTGTAAGTTTGGCT
1 TGTTACCCTACTGCTTAGGGGTTTAAGGTCTGTAA-TTTAGCC
** * * * * ** * * *
25207908 TACTACCCTATTGCTTAGGGGGTTGA-GCCCATCATCTTTGATC
1 TGTTACCCTACTGCTTAGGGGTTTAAGGTCTGTAAT-TTAG-CC
* * * * *
25207951 TGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATTCAACC
1 TGTTACCCTACTGCTTAGGGGTTTAAGGTCTGT-AATTTAGCC
** *** **
25207994 TGCTTCACTGTAACT--TTAGGGGGACAAAATCTGTAATTTTCAGCC
1 TG-TT-ACCCT-ACTGCTTAGGGGTTTAAGGTCTGTAA-TTT-AGCC
* * * * *
25208039 TATTACCCTACTGCTTAGGGGGTTAAGGTCTGCAAATTTGGCT
1 TGTTACCCTACTGCTTAGGGGTTTAAGGTCTG-TAATTTAGCC
* *** * * *
25208082 TGTTACCCTACTGCTTAGGGGGTTAAAACCCTTTGAATTCAACC
1 TGTTACCCTACTGCTTA-GGGGTTTAAGGTCTGT-AATTTAGCC
* *
25208126 TGTTACCCAACTGCTTAGGGGTTTAAGGTCTGTACATTTAGTC
1 TGTTACCCTACTGCTTAGGGGTTTAAGGTCTGTA-ATTTAGCC
25208169 TGTT
1 TGTT
25208173 CCATTGCGAC
Statistics
Matches: 226, Mismatches: 65, Indels: 31
0.70 0.20 0.10
Matches are distributed among these distances:
41 1 0.00
42 67 0.30
43 73 0.32
44 72 0.32
45 10 0.04
46 3 0.01
ACGTcount: A:0.21, C:0.20, G:0.22, T:0.36
Consensus pattern (42 bp):
TGTTACCCTACTGCTTAGGGGTTTAAGGTCTGTAATTTAGCC
Found at i:25208450 original size:43 final size:43
Alignment explanation
Indices: 25208296--25208473 Score: 162
Period size: 43 Copynumber: 4.1 Consensus size: 43
25208286 ATCTGTAATT
* * * *
25208296 TTCAGCCTATTACCCTACTACTTAGGGGGTTAAGGCCTGCAAA
1 TTCAACCTATTACCCTACTGCTTAGGGGGTTAAGGTCTGCGAA
*** * * *
25208339 TTTGGCTTGTTACCCTACTGCTTAGGGGGTTAAAGCTCAT-C-ATA
1 TTCAACCTATTACCCTACTGCTTAGGGGGTT-AAGGTC-TGCGA-A
* * ** *
25208383 TTCGATCTATTTTCCTACTGCTTAGGGGGTTAAGATCTGCGAA
1 TTCAACCTATTACCCTACTGCTTAGGGGGTTAAGGTCTGCGAA
*
25208426 TTCAACCTATTACCCTACTGCTTAGGGGGTTAAGGTCTGGTGAA
1 TTCAACCTATTACCCTACTGCTTAGGGGGTTAAGGTCT-GCGAA
25208470 TTCA
1 TTCA
25208474 CTGATTCTAG
Statistics
Matches: 108, Mismatches: 21, Indels: 11
0.77 0.15 0.08
Matches are distributed among these distances:
42 1 0.01
43 67 0.62
44 39 0.36
45 1 0.01
ACGTcount: A:0.22, C:0.21, G:0.22, T:0.34
Consensus pattern (43 bp):
TTCAACCTATTACCCTACTGCTTAGGGGGTTAAGGTCTGCGAA
Found at i:25215277 original size:9 final size:9
Alignment explanation
Indices: 25215259--25215290 Score: 57
Period size: 9 Copynumber: 3.7 Consensus size: 9
25215249 TACAATGCTG
25215259 ATGC-ATGA
1 ATGCAATGA
25215267 ATGCAATGA
1 ATGCAATGA
25215276 ATGCAATGA
1 ATGCAATGA
25215285 ATGCAA
1 ATGCAA
25215291 AAAAGCGTTG
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
8 4 0.17
9 19 0.83
ACGTcount: A:0.44, C:0.12, G:0.22, T:0.22
Consensus pattern (9 bp):
ATGCAATGA
Found at i:25219291 original size:2 final size:2
Alignment explanation
Indices: 25219269--25219310 Score: 52
Period size: 2 Copynumber: 22.0 Consensus size: 2
25219259 AAAAAGGAAA
* *
25219269 AT AT AC AT A- AT AT AC AT AT AT AT AT AT AT AT A- AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
25219309 AT
1 AT
25219311 GAGATATAAA
Statistics
Matches: 34, Mismatches: 4, Indels: 4
0.81 0.10 0.10
Matches are distributed among these distances:
1 2 0.06
2 32 0.94
ACGTcount: A:0.52, C:0.05, G:0.00, T:0.43
Consensus pattern (2 bp):
AT
Found at i:25219318 original size:13 final size:11
Alignment explanation
Indices: 25219269--25219310 Score: 57
Period size: 11 Copynumber: 3.7 Consensus size: 11
25219259 AAAAAGGAAA
*
25219269 ATATACATAAT
1 ATATATATAAT
*
25219280 ATACATATATAT
1 ATATATATA-AT
25219292 ATATATATAAT
1 ATATATATAAT
25219303 ATATATAT
1 ATATATAT
25219311 GAGATATAAA
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
11 17 0.63
12 10 0.37
ACGTcount: A:0.52, C:0.05, G:0.00, T:0.43
Consensus pattern (11 bp):
ATATATATAAT
Found at i:25223762 original size:40 final size:40
Alignment explanation
Indices: 25223718--25223902 Score: 226
Period size: 40 Copynumber: 4.6 Consensus size: 40
25223708 CTCGCACAAG
* * * *
25223718 GCCTTTGGGTCTTAGCCCAGATATGGTCACTAGCATAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
* * *
25223758 GCCTTCGGGACTTAGCCCGGATATAGTCGCTACCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
* * * *
25223798 GCCTTCGGGTTTTGGCCCGGATATAGTAACTCGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
* * *
25223838 GCCTTCGGATCTTAGTCCGGATATAGTCACTTAGCACAAAA
1 GCCTTCGGGTCTTAGCCCGGATATAGTCAC-TAGCACAAAT
*
25223879 GCCTTCGGGACTTAGCCCGGATAT
1 GCCTTCGGGTCTTAGCCCGGATAT
25223903 CATTCGAATA
Statistics
Matches: 120, Mismatches: 24, Indels: 1
0.83 0.17 0.01
Matches are distributed among these distances:
40 91 0.76
41 29 0.24
ACGTcount: A:0.24, C:0.26, G:0.23, T:0.26
Consensus pattern (40 bp):
GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
Found at i:25227908 original size:35 final size:35
Alignment explanation
Indices: 25227862--25227933 Score: 144
Period size: 35 Copynumber: 2.1 Consensus size: 35
25227852 ATCACATAGC
25227862 AAGATTTAAACCATGGGCTAGGTAGAACTCAAACT
1 AAGATTTAAACCATGGGCTAGGTAGAACTCAAACT
25227897 AAGATTTAAACCATGGGCTAGGTAGAACTCAAACT
1 AAGATTTAAACCATGGGCTAGGTAGAACTCAAACT
25227932 AA
1 AA
25227934 CATAAAAAAT
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 37 1.00
ACGTcount: A:0.42, C:0.17, G:0.19, T:0.22
Consensus pattern (35 bp):
AAGATTTAAACCATGGGCTAGGTAGAACTCAAACT
Found at i:25245291 original size:58 final size:56
Alignment explanation
Indices: 25245153--25245293 Score: 158
Period size: 57 Copynumber: 2.5 Consensus size: 56
25245143 TAACATATAA
* * * *
25245153 CAGGATTACCAGTCCAGGCTAAATCCTTTTTTTAATATATGCTCAGAAGAGCTCATT
1 CAGGATTACCAGTCCAGGCTAAAT-CTTATTGTAACATATGCTCAGAAGAGATCATT
* * * **
25245210 TAGGATTACCATTCCAGGCTAAATCTTAATTGTAACATATGCTCA-AGAGGGATTGTAT
1 CAGGATTACCAGTCCAGGCTAAATCTT-ATTGTAACATATGCTCAGA-AGAGATCAT-T
25245268 CAGGATTACCAGTCCAGGCTAAATCT
1 CAGGATTACCAGTCCAGGCTAAATCT
25245294 CGTCAGCAAC
Statistics
Matches: 70, Mismatches: 11, Indels: 5
0.81 0.13 0.06
Matches are distributed among these distances:
56 4 0.06
57 41 0.59
58 25 0.36
ACGTcount: A:0.31, C:0.20, G:0.18, T:0.31
Consensus pattern (56 bp):
CAGGATTACCAGTCCAGGCTAAATCTTATTGTAACATATGCTCAGAAGAGATCATT
Found at i:25249150 original size:87 final size:86
Alignment explanation
Indices: 25248980--25249143 Score: 204
Period size: 87 Copynumber: 1.9 Consensus size: 86
25248970 TCGTGTAAGT
* * * *
25248980 AGAATTTTGCAACAGAGGAATCTCCTTGATGAGTTCTCCAAGAAAGAGTTCGTTATGTTGTAATC
1 AGAATTCTGCAACAGAGGAATCTCCTTGATGAGTCCACCAAGAAAGAGTTCGTTATCTTGTAATC
* *
25249045 TATCCTTATGTGCTAGCTATC
66 TATCATAATGTGCTAGCTATC
** * *
25249066 AGAATTCTGCAATGGAGGAATC-CACTTGCATGAGTCCACTAAGAAAGAGTTTGTTATCTTGTAA
1 AGAATTCTGCAACAGAGGAATCTC-CTTG-ATGAGTCCACCAAGAAAGAGTTCGTTATCTTGTAA
*
25249130 TCTATTATAATGTG
64 TCTATCATAATGTG
25249144 TGAGCTACCT
Statistics
Matches: 65, Mismatches: 11, Indels: 3
0.82 0.14 0.04
Matches are distributed among these distances:
85 1 0.02
86 23 0.35
87 41 0.63
ACGTcount: A:0.30, C:0.16, G:0.20, T:0.34
Consensus pattern (86 bp):
AGAATTCTGCAACAGAGGAATCTCCTTGATGAGTCCACCAAGAAAGAGTTCGTTATCTTGTAATC
TATCATAATGTGCTAGCTATC
Found at i:25261970 original size:26 final size:26
Alignment explanation
Indices: 25261941--25262048 Score: 162
Period size: 26 Copynumber: 4.2 Consensus size: 26
25261931 TGAAATTCCC
*
25261941 ATCATGGAACATTTACCTAAATCATT
1 ATCATGGAACATTTACCTAAACCATT
*
25261967 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAAACCATT
* * *
25261993 ATCATAGAATATTTACCTAATCCATT
1 ATCATGGAACATTTACCTAAACCATT
*
25262019 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAAACCATT
25262045 ATCA
1 ATCA
25262049 ATTTGTACCA
Statistics
Matches: 74, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 74 1.00
ACGTcount: A:0.37, C:0.23, G:0.06, T:0.33
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAAACCATT
Found at i:25262019 original size:52 final size:52
Alignment explanation
Indices: 25261941--25262048 Score: 182
Period size: 52 Copynumber: 2.1 Consensus size: 52
25261931 TGAAATTCCC
*
25261941 ATCATGGAACATTTACCTAAATCATTATCATGGAACATTTACCTAACCCATT
1 ATCATAGAACATTTACCTAAATCATTATCATGGAACATTTACCTAACCCATT
*
25261993 ATCATAGAATATTTACCT-AATCCATTATCATGGAACATTTACCTAACCCATT
1 ATCATAGAACATTTACCTAAAT-CATTATCATGGAACATTTACCTAACCCATT
25262045 ATCA
1 ATCA
25262049 ATTTGTACCA
Statistics
Matches: 53, Mismatches: 2, Indels: 2
0.93 0.04 0.04
Matches are distributed among these distances:
51 3 0.06
52 50 0.94
ACGTcount: A:0.37, C:0.23, G:0.06, T:0.33
Consensus pattern (52 bp):
ATCATAGAACATTTACCTAAATCATTATCATGGAACATTTACCTAACCCATT
Found at i:25269139 original size:24 final size:25
Alignment explanation
Indices: 25269114--25269168 Score: 78
Period size: 25 Copynumber: 2.3 Consensus size: 25
25269104 GAGGCGTAGC
25269114 CCCTTTT-AAT-AACTGGGGCAAAG
1 CCCTTTTCAATAAACTGGGGCAAAG
*
25269137 CCCTTTTCGATAAACTGGGGCAAAG
1 CCCTTTTCAATAAACTGGGGCAAAG
*
25269162 TCCTTTT
1 CCCTTTT
25269169 GCACTTCCTC
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
23 7 0.25
24 2 0.07
25 19 0.68
ACGTcount: A:0.25, C:0.24, G:0.20, T:0.31
Consensus pattern (25 bp):
CCCTTTTCAATAAACTGGGGCAAAG
Found at i:25269227 original size:10 final size:10
Alignment explanation
Indices: 25269214--25269253 Score: 53
Period size: 10 Copynumber: 3.9 Consensus size: 10
25269204 CATATATGAA
25269214 CATATCATGG
1 CATATCATGG
*
25269224 CATATCAGGTG
1 CATATCATG-G
*
25269235 AATATCATGG
1 CATATCATGG
25269245 CATATCATG
1 CATATCATG
25269254 TACAAAACAA
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
10 17 0.68
11 8 0.32
ACGTcount: A:0.33, C:0.17, G:0.20, T:0.30
Consensus pattern (10 bp):
CATATCATGG
Found at i:25269333 original size:25 final size:25
Alignment explanation
Indices: 25269305--25269368 Score: 119
Period size: 25 Copynumber: 2.6 Consensus size: 25
25269295 TAGGGGTATG
25269305 ATGGTCATTTTCACCTACGGGCAAA
1 ATGGTCATTTTCACCTACGGGCAAA
*
25269330 ATGGTCATTTTCACCTAGGGGCAAA
1 ATGGTCATTTTCACCTACGGGCAAA
25269355 ATGGTCATTTTCAC
1 ATGGTCATTTTCAC
25269369 ATTATAAGGG
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
25 38 1.00
ACGTcount: A:0.27, C:0.22, G:0.20, T:0.31
Consensus pattern (25 bp):
ATGGTCATTTTCACCTACGGGCAAA
Found at i:25276185 original size:7 final size:7
Alignment explanation
Indices: 25276173--25276199 Score: 54
Period size: 7 Copynumber: 3.9 Consensus size: 7
25276163 AAGTAACATT
25276173 TTTATCA
1 TTTATCA
25276180 TTTATCA
1 TTTATCA
25276187 TTTATCA
1 TTTATCA
25276194 TTTATC
1 TTTATC
25276200 GGGTAATATC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 20 1.00
ACGTcount: A:0.26, C:0.15, G:0.00, T:0.59
Consensus pattern (7 bp):
TTTATCA
Found at i:25279792 original size:27 final size:27
Alignment explanation
Indices: 25279758--25279950 Score: 253
Period size: 27 Copynumber: 7.1 Consensus size: 27
25279748 GCCGAAAAGG
*
25279758 TGACTGAAATACCCCCATAGGGTAAAA
1 TGACTGAAATACCCCTATAGGGTAAAA
*
25279785 TGACTGAAATACCCCTTGTAGGGTAAAA
1 TGACTGAAATACCCC-TATAGGGTAAAA
*
25279813 TGACTGAAATACCCCCATAGGGTAAAA
1 TGACTGAAATACCCCTATAGGGTAAAA
25279840 TGATCT-AAATACCCCTATAGGGTAAAA
1 TGA-CTGAAATACCCCTATAGGGTAAAA
* * *
25279867 TGACTGAAATACCCTTATAAGTTAAAA
1 TGACTGAAATACCCCTATAGGGTAAAA
* *
25279894 TGACTGTAATACCCCTATAAGGTAAAA
1 TGACTGAAATACCCCTATAGGGTAAAA
* * * *
25279921 TGACTGTAATACTCCTGTAAGGTAAAA
1 TGACTGAAATACCCCTATAGGGTAAAA
25279948 TGA
1 TGA
25279951 TTGATTTGCC
Statistics
Matches: 150, Mismatches: 13, Indels: 6
0.89 0.08 0.04
Matches are distributed among these distances:
26 2 0.01
27 121 0.81
28 27 0.18
ACGTcount: A:0.40, C:0.18, G:0.17, T:0.25
Consensus pattern (27 bp):
TGACTGAAATACCCCTATAGGGTAAAA
Found at i:25283957 original size:40 final size:40
Alignment explanation
Indices: 25283863--25284007 Score: 175
Period size: 40 Copynumber: 3.6 Consensus size: 40
25283853 TACTCGAATG
*
25283863 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGCGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGC-AAGCGACT
* *
25283904 ACATCCGGACTAAGAT-CCGAAGGCATTTGTGCAAGCGACT
1 ATATCCGGGCTAAG-TCCCGAAGGCATTTGTGCAAGCGACT
* * * * *
25283944 ATATCTGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGCGACT
* *
25283984 ATATCCGGGTTAAGACCCGAAGGC
1 ATATCCGGGCTAAGTCCCGAAGGC
25284008 CTTGTGTGAG
Statistics
Matches: 89, Mismatches: 13, Indels: 5
0.83 0.12 0.05
Matches are distributed among these distances:
39 1 0.01
40 60 0.67
41 27 0.30
42 1 0.01
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGCGACT
Found at i:25298434 original size:67 final size:67
Alignment explanation
Indices: 25298322--25298466 Score: 215
Period size: 67 Copynumber: 2.2 Consensus size: 67
25298312 AATTGCAACA
* *
25298322 AGGCTGCCAGATATTGTGACGAAATCACCAGATACAGATATTGTGGCTAGGCCACCAGATTACAG
1 AGGCTGCCAGATATTGTAACGAAATCACCAGATACAGATATTGTGGCGAGGCCACCAGATTACAG
25298387 CG
66 CG
*
25298389 AGGCTGCCAGATATTGTAAC-AAAGTCACCAGAATA-A-ATATATGTGGCGAGGCCACCAGATTG
1 AGGCTGCCAGATATTGTAACGAAA-TCACCAG-ATACAGATAT-TGTGGCGAGGCCACCAGATTA
25298451 CAGCG
63 CAGCG
25298456 AGGCTGCCAGA
1 AGGCTGCCAGA
25298467 ACGCTTCCTC
Statistics
Matches: 72, Mismatches: 3, Indels: 6
0.89 0.04 0.07
Matches are distributed among these distances:
66 7 0.10
67 62 0.86
68 3 0.04
ACGTcount: A:0.32, C:0.22, G:0.26, T:0.19
Consensus pattern (67 bp):
AGGCTGCCAGATATTGTAACGAAATCACCAGATACAGATATTGTGGCGAGGCCACCAGATTACAG
CG
Found at i:25302288 original size:47 final size:46
Alignment explanation
Indices: 25302259--25302836 Score: 856
Period size: 47 Copynumber: 12.3 Consensus size: 46
25302249 TATATATGTG
25302259 ATATGTGATAAGGCCTAATGGCCGATGTGATAAATGTGAAAGTGTAT
1 ATATGTGATAAGGCCTAATGGCCGATGTGAT-AATGTGAAAGTGTAT
* *
25302306 ATATGTGATAAGGCCTAATAGCCGATGTGACAAATGTGAAAGTGTAT
1 ATATGTGATAAGGCCTAATGGCCGATGTGA-TAATGTGAAAGTGTAT
*
25302353 ATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTAT
1 ATATGTGATAAGGCCTAATGGCCGATGTGAT-AATGTGAAAGTGTAT
25302400 ATATGTGATAAGGCCTAATGGCCGATGTGATAAATGTGAAAGTGTAT
1 ATATGTGATAAGGCCTAATGGCCGATGTGAT-AATGTGAAAGTGTAT
*
25302447 ATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATAT
1 ATATGTGATAAGGCCTAATGGCCGATGTGAT-AATGTGAAAGTG--TAT
25302496 ATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
1 ATATGTGATAAGGCCTAATGGCCGATGTGAT-AATGTGAAAGTGTAT
*
25302543 ATATGTGATAAGGCCTAATGGACGATGTGATAAATGTGAAAGTGTAT
1 ATATGTGATAAGGCCTAATGGCCGATGTGAT-AATGTGAAAGTGTAT
*
25302590 ATATGTGATAAGGCCTAATCGCCGATGTGATGAATGTGAAAGTGTAT
1 ATATGTGATAAGGCCTAATGGCCGATGTGAT-AATGTGAAAGTGTAT
25302637 ATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
1 ATATGTGATAAGGCCTAATGGCCGATGTGAT-AATGTGAAAGTGTAT
25302684 ATATGTGATAAGGCCTAATGGCCGATGTGATGATGAATGTGAAAGTGTAT
1 ATATGTGATAAGGCCTAATGGCCGA--TG-TGAT-AATGTGAAAGTGTAT
25302734 ATATGT-ATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
1 ATATGTGATAAGGCCTAATGGCCGATGTGAT-AATGTGAAAGTGTAT
* * * * * * *
25302780 ATATGTGACAGGGCCGAGTGGCCAACGTGATGGATGTGAAA--GTAT
1 ATATGTGATAAGGCCTAATGGCCGATGTGAT-AATGTGAAAGTGTAT
*
25302825 AAATGTGATAAG
1 ATATGTGATAAG
25302837 TCCCGAAGGG
Statistics
Matches: 499, Mismatches: 24, Indels: 18
0.92 0.04 0.03
Matches are distributed among these distances:
45 13 0.03
46 26 0.05
47 368 0.74
49 66 0.13
50 26 0.05
ACGTcount: A:0.34, C:0.09, G:0.29, T:0.29
Consensus pattern (46 bp):
ATATGTGATAAGGCCTAATGGCCGATGTGATAATGTGAAAGTGTAT
Found at i:25302557 original size:237 final size:237
Alignment explanation
Indices: 25302104--25302787 Score: 1133
Period size: 237 Copynumber: 2.8 Consensus size: 237
25302094 GTGAACATGC
* *
25302104 ATATATGAGATAAGG-CTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGC
1 ATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGC
25302168 CTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGA
64 CTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGA
*
25302233 TGAATGTGAAAGTGTATATATATGTGATATGTGATAAGGCCTAATGGCCGATGTGATAAATGTGA
127 TGAATGTGAAAGTG----TATA--T-ATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGA
*
25302298 AAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGACAAATGTGAAAGTGT
185 AAGTGTATATATGTGATAAGGCCTAATAGACGATGTGACAAATGTGAAAGTGT
25302351 ATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCT
1 ATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCT
* *
25302416 AATGGCCGATGTGATAAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAA
66 AATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
25302481 TGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
131 TGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
* *
25302546 TGTGATAAGGCCTAATGGACGATGTGATAAATGTGAAAGTGT
196 TGTGATAAGGCCTAATAGACGATGTGACAAATGTGAAAGTGT
*
25302588 ATATATGTGATAAGGCCTAATCGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCT
1 ATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCT
25302653 AATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAT
66 AATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGA--TG-TGAT
25302718 GAATGTGAAAGTG--TATATATGT-ATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
128 GAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
25302780 ATATGTGA
193 ATATGTGA
25302788 CAGGGCCGAG
Statistics
Matches: 422, Mismatches: 11, Indels: 18
0.94 0.02 0.04
Matches are distributed among these distances:
237 254 0.60
238 10 0.02
239 2 0.00
240 21 0.05
244 46 0.11
246 46 0.11
247 14 0.03
248 29 0.07
ACGTcount: A:0.34, C:0.08, G:0.28, T:0.30
Consensus pattern (237 bp):
ATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCT
AATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
TGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
TGTGATAAGGCCTAATAGACGATGTGACAAATGTGAAAGTGT
Found at i:25303012 original size:37 final size:37
Alignment explanation
Indices: 25302955--25303033 Score: 113
Period size: 37 Copynumber: 2.1 Consensus size: 37
25302945 CCGAGCTCTA
* * *
25302955 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
**
25302992 AAGACCCGATAACTTTGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
25303029 AAGAC
1 AAGAC
25303034 TTCGTAATAA
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.24, C:0.18, G:0.32, T:0.27
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:25305020 original size:79 final size:79
Alignment explanation
Indices: 25304927--25305270 Score: 489
Period size: 79 Copynumber: 4.3 Consensus size: 79
25304917 TAAGTGACCA
25304927 TATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTCCCGGAAG-GC
1 TATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTCCC-GAAGAGC
*
25304991 ATTCGATGCTA-AATG
65 ATTC-ATGCTAGGATG
25305006 TATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTCCCGAAGAGCA
1 TATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTCCCGAAGAGCA
25305071 TTCATGCTAGTGATG
66 TTCATGCTAG-GATG
25305086 TATCCGGGCTAAGTTTCCGAAGAGCATT-GTGCTAGTGATGTATCCGGGCTAAGTCTCCGAAGAG
1 TATCCGGGCTAAG-TTCCGAAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTC-CCGAAGAG
25305150 CATTCATGCTAGTGATG
64 CATTCATGCTAG-GATG
* * * *
25305167 TATCCGGGCTAAGTTCCAAAGAGCATTCGTGCTAGTGATATATCCGTGCTAA-ACCCGAAGAGCA
1 TATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTCCCGAAGAGCA
* * * * *
25305231 TTCGTGTTGGTGTTA
66 TTCATGCTAG-GATG
* *
25305246 TATCCGGGCTAGGTCCCGAAGAGCA
1 TATCCGGGCTAAGTTCCGAAGAGCA
25305271 ATCATGCTGG
Statistics
Matches: 246, Mismatches: 13, Indels: 12
0.91 0.05 0.04
Matches are distributed among these distances:
78 10 0.04
79 105 0.43
80 57 0.23
81 74 0.30
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.26
Consensus pattern (79 bp):
TATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTCCCGAAGAGCA
TTCATGCTAGGATG
Found at i:25305282 original size:40 final size:40
Alignment explanation
Indices: 25304890--25305270 Score: 488
Period size: 40 Copynumber: 9.6 Consensus size: 40
25304880 CGAATGATGC
* **
25304890 CCGGGCTAAGTCCCGAAG-GC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGAGCATTCGTGCT-AGTGA-TGTAT
*
25304930 CCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTAT
1 CCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTAT
*
25304970 CCGGGCTAAGTCCCGGAAG-GCATTCGATGCTA--AATGTAT
1 CCGGGCTAAGTCCC-GAAGAGCATTCG-TGCTAGTGATGTAT
*
25305009 CCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTAT
1 CCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTAT
*
25305049 CCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTAT
1 CCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTAT
*
25305089 CCGGGCTAAGTTTCCGAAGAGCATT-GTGCTAGTGATGTAT
1 CCGGGCTAAG-TCCCGAAGAGCATTCGTGCTAGTGATGTAT
*
25305129 CCGGGCTAAGTCTCCGAAGAGCATTCATGCTAGTGATGTAT
1 CCGGGCTAAGTC-CCGAAGAGCATTCGTGCTAGTGATGTAT
* * *
25305170 CCGGGCTAAGTTCCAAAGAGCATTCGTGCTAGTGATATAT
1 CCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTAT
* * * * * *
25305210 CCGTGCTAA-ACCCGAAGAGCATTCGTGTTGGTGTTATAT
1 CCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTAT
*
25305249 CCGGGCTAGGTCCCGAAGAGCA
1 CCGGGCTAAGTCCCGAAGAGCA
25305271 ATCATGCTGG
Statistics
Matches: 302, Mismatches: 28, Indels: 22
0.86 0.08 0.06
Matches are distributed among these distances:
38 9 0.03
39 58 0.19
40 174 0.58
41 54 0.18
42 7 0.02
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTAT
Found at i:25308207 original size:47 final size:47
Alignment explanation
Indices: 25308156--25308616 Score: 757
Period size: 47 Copynumber: 9.7 Consensus size: 47
25308146 TTAGGATTCT
* *
25308156 ATGTGATGGAA-GTGAACA-TGCATATATGAGATAAGGCCTAATGGCCG
1 ATGTGAT-GAATGTGAA-AGTGTATATATGTGATAAGGCCTAATGGCCG
25308203 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCG
25308252 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCG
25308301 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
25308348 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
25308395 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAAT-GCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
25308441 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
25308488 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* * * * *
25308535 ATGTGATGAATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCA
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* * *
25308582 ACGTGATGGATGTGAAAGTGTATAAATGTGATAAG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAG
25308617 TCCCGAAGGG
Statistics
Matches: 397, Mismatches: 12, Indels: 10
0.95 0.03 0.02
Matches are distributed among these distances:
46 50 0.13
47 253 0.64
49 94 0.24
ACGTcount: A:0.33, C:0.09, G:0.30, T:0.29
Consensus pattern (47 bp):
ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
Found at i:25308520 original size:187 final size:189
Alignment explanation
Indices: 25308156--25308616 Score: 759
Period size: 187 Copynumber: 2.4 Consensus size: 189
25308146 TTAGGATTCT
* *
25308156 ATGTGATGGAA-GTGAACA-TGCATATATGAGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 ATGTGAT-GAATGTGAA-AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
25308219 AGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTG
64 AGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG-ATATATATGTG
25308284 ATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
126 ATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
25308348 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
25308413 TGTATATATGTGATAAGGCCTAAT-GCCGATGTGATGAATGTGAAAGTG-TATATATGTGATAAG
66 TGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGATATATATGTGATAAG
25308476 GCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
131 GCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* * * * * * *
25308535 ATGTGATGAATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATGGATGTGAAAG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
*
25308600 TGTATAAATGTGATAAG
66 TGTATATATGTGATAAG
25308617 TCCCGAAGGG
Statistics
Matches: 257, Mismatches: 10, Indels: 9
0.93 0.04 0.03
Matches are distributed among these distances:
187 148 0.58
189 24 0.09
190 22 0.09
191 4 0.02
192 59 0.23
ACGTcount: A:0.33, C:0.09, G:0.30, T:0.29
Consensus pattern (189 bp):
ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
TGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGATATATATGTGATAAG
GCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
Found at i:25308791 original size:37 final size:37
Alignment explanation
Indices: 25308735--25308813 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
25308725 CCGAGCTCTA
* * *
25308735 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
*
25308772 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
25308809 AAGAC
1 AAGAC
25308814 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.24, C:0.19, G:0.32, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:25312958 original size:12 final size:12
Alignment explanation
Indices: 25312941--25312965 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
25312931 CTTTTTATTC
25312941 TATAAGTTTCCA
1 TATAAGTTTCCA
25312953 TATAAGTTTCCA
1 TATAAGTTTCCA
25312965 T
1 T
25312966 TTGTCTGACT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.32, C:0.16, G:0.08, T:0.44
Consensus pattern (12 bp):
TATAAGTTTCCA
Found at i:25313874 original size:221 final size:221
Alignment explanation
Indices: 25313491--25313935 Score: 863
Period size: 221 Copynumber: 2.0 Consensus size: 221
25313481 ATTGGGTATA
25313491 AGACTTCTGCAGTATGTAGAATCATTCAAAATAGTGGAATTCATAGCCCTAGAAATGGATAAATC
1 AGACTTCTGCAGTATGTAGAATCATTCAAAATAGTGGAATTCATAGCCCTAGAAATGGATAAATC
*
25313556 ATATCATCTCATTTTTATTACATGATATATGAAAAGTAATTGTAGCTACCATCGTTTGTCTGTTT
66 ATATCATCTCATTTTTATTACATGATATATGAAAAGTAATCGTAGCTACCATCGTTTGTCTGTTT
25313621 GGTGAATGACTTAACTACTATTTGATAATAATTGGCTTTTCATGAAAGAAATTGTAATGGTTACC
131 GGTGAATGACTTAACTACTATTTGATAATAATTGGCTTTTCATGAAAGAAATTGTAATGGTTACC
25313686 ATGAGATAAAATAAGATCATATTGAG
196 ATGAGATAAAATAAGATCATATTGAG
*
25313712 AGACTTCTGCAGTATGTAGAATCATTCAAAATAGTGGAATTCATAGCCCTAGAAATGGGTAAATC
1 AGACTTCTGCAGTATGTAGAATCATTCAAAATAGTGGAATTCATAGCCCTAGAAATGGATAAATC
25313777 ATATCATCTCATTTTTATTACATGATATATGAAAAGTAATCGTAGCTACCATCGTTTGTCTGTTT
66 ATATCATCTCATTTTTATTACATGATATATGAAAAGTAATCGTAGCTACCATCGTTTGTCTGTTT
25313842 GGTGAATGACTTAACTACTATTTGATAATAATTGGCTTTTCATGAAAGAAATTGTAATGGTTACC
131 GGTGAATGACTTAACTACTATTTGATAATAATTGGCTTTTCATGAAAGAAATTGTAATGGTTACC
*
25313907 ATGAGATAAAATAAGATCATGTTGAG
196 ATGAGATAAAATAAGATCATATTGAG
25313933 AGA
1 AGA
25313936 ACAAAATTAT
Statistics
Matches: 221, Mismatches: 3, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
221 221 1.00
ACGTcount: A:0.36, C:0.12, G:0.17, T:0.35
Consensus pattern (221 bp):
AGACTTCTGCAGTATGTAGAATCATTCAAAATAGTGGAATTCATAGCCCTAGAAATGGATAAATC
ATATCATCTCATTTTTATTACATGATATATGAAAAGTAATCGTAGCTACCATCGTTTGTCTGTTT
GGTGAATGACTTAACTACTATTTGATAATAATTGGCTTTTCATGAAAGAAATTGTAATGGTTACC
ATGAGATAAAATAAGATCATATTGAG
Found at i:25323560 original size:34 final size:34
Alignment explanation
Indices: 25323516--25323583 Score: 95
Period size: 34 Copynumber: 2.0 Consensus size: 34
25323506 GCACAGTTGA
25323516 ACAGTCTTGGGCCTAAGCCC-TCTTCAGTATCAGTG
1 ACAGTCTTGGGCCTAAGCCCATCTT-AGTA-CAGTG
*
25323551 ACAGT-TTGGGCCTTAGCCCATCTTAGTACAGTG
1 ACAGTCTTGGGCCTAAGCCCATCTTAGTACAGTG
25323584 TCAAAAATAC
Statistics
Matches: 31, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
33 5 0.16
34 17 0.55
35 9 0.29
ACGTcount: A:0.21, C:0.26, G:0.24, T:0.29
Consensus pattern (34 bp):
ACAGTCTTGGGCCTAAGCCCATCTTAGTACAGTG
Done.