Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A06
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 115140250
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2234201 characters in sequence are not A, C, G, or T
File 79 of 345
Found at i:25742970 original size:60 final size:60
Alignment explanation
Indices: 25742877--25743007 Score: 165
Period size: 60 Copynumber: 2.2 Consensus size: 60
25742867 TCCTTTTTGA
** *
25742877 AATTTTT-GAAATTTGAACTAATTTGAGAAATTTTGTAAATGTTGAGAGCTAAATTTATTG
1 AATTTTTAG-AATTTGAACTAAAATGAGAAATTTTGTAAATATTGAGAGCTAAATTTATTG
* * * * *
25742937 AATTTTTAGAATTTGGACTAAAATGATAAATTTTGTAAATATTGAGGGTTAAATTTGTTG
1 AATTTTTAGAATTTGAACTAAAATGAGAAATTTTGTAAATATTGAGAGCTAAATTTATTG
25742997 AACTTTTTAGA
1 AA-TTTTTAGA
25743008 TTTAACATCA
Statistics
Matches: 61, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
60 52 0.85
61 9 0.15
ACGTcount: A:0.37, C:0.03, G:0.17, T:0.44
Consensus pattern (60 bp):
AATTTTTAGAATTTGAACTAAAATGAGAAATTTTGTAAATATTGAGAGCTAAATTTATTG
Found at i:25743456 original size:16 final size:17
Alignment explanation
Indices: 25743415--25743462 Score: 62
Period size: 16 Copynumber: 2.8 Consensus size: 17
25743405 CTTTTTAACC
25743415 ATAACTTTAAAAAATATT
1 ATAA-TTTAAAAAATATT
*
25743433 ATAATTTAAATAATA-T
1 ATAATTTAAAAAATATT
*
25743449 ATATTTTAAAAAAT
1 ATAATTTAAAAAAT
25743463 TTAAAAAATA
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
16 13 0.48
17 10 0.37
18 4 0.15
ACGTcount: A:0.56, C:0.02, G:0.00, T:0.42
Consensus pattern (17 bp):
ATAATTTAAAAAATATT
Found at i:25743977 original size:16 final size:17
Alignment explanation
Indices: 25743942--25743978 Score: 58
Period size: 17 Copynumber: 2.2 Consensus size: 17
25743932 ATATATTAAT
*
25743942 TATTTTAATAATTCAAA
1 TATTTTAATAATTAAAA
25743959 TATTTTAATAA-TAAAA
1 TATTTTAATAATTAAAA
25743975 TATT
1 TATT
25743979 CCTATCATTA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 8 0.42
17 11 0.58
ACGTcount: A:0.49, C:0.03, G:0.00, T:0.49
Consensus pattern (17 bp):
TATTTTAATAATTAAAA
Found at i:25744272 original size:24 final size:24
Alignment explanation
Indices: 25744201--25744273 Score: 69
Period size: 30 Copynumber: 2.9 Consensus size: 24
25744191 TTTTTAGTAA
25744201 TATTTTTAAAT-TA-AATTATAAT
1 TATTTTTAAATGTATAATTATAAT
*
25744223 TATTTTTAAATGTGGAATTATCATTATAGT
1 TATTTTTAAATGT---A-TA--ATTATAAT
25744253 TATTTTTAAATGTATAATTAT
1 TATTTTTAAATGTATAATTAT
25744274 TACAAATTCT
Statistics
Matches: 42, Mismatches: 1, Indels: 14
0.74 0.02 0.25
Matches are distributed among these distances:
22 11 0.26
23 1 0.02
24 5 0.12
26 3 0.07
27 1 0.02
28 1 0.02
30 20 0.48
ACGTcount: A:0.38, C:0.01, G:0.07, T:0.53
Consensus pattern (24 bp):
TATTTTTAAATGTATAATTATAAT
Found at i:25744272 original size:30 final size:30
Alignment explanation
Indices: 25744215--25744273 Score: 91
Period size: 30 Copynumber: 2.0 Consensus size: 30
25744205 TTTAAATTAA
*
25744215 ATTATAATTATTTTTAAATGTGGAATTATC
1 ATTATAATTATTTTTAAATGTAGAATTATC
* *
25744245 ATTATAGTTATTTTTAAATGTATAATTAT
1 ATTATAATTATTTTTAAATGTAGAATTAT
25744274 TACAAATTCT
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.37, C:0.02, G:0.08, T:0.53
Consensus pattern (30 bp):
ATTATAATTATTTTTAAATGTAGAATTATC
Found at i:25746353 original size:25 final size:25
Alignment explanation
Indices: 25746297--25746366 Score: 74
Period size: 25 Copynumber: 2.8 Consensus size: 25
25746287 CCGAATATTT
25746297 AATATATATTAT-TT-TTTGTTTAAAA
1 AATAT-TATTATATTATTT-TTTAAAA
*
25746322 AATTATTATTATATTATTTTTTAATA
1 AA-TATTATTATATTATTTTTTAAAA
25746348 AATATTA-TATTATTATTTT
1 AATATTATTA-TATTATTTT
25746367 CATTATTATG
Statistics
Matches: 40, Mismatches: 1, Indels: 8
0.82 0.02 0.16
Matches are distributed among these distances:
24 2 0.05
25 22 0.55
26 13 0.32
27 3 0.08
ACGTcount: A:0.39, C:0.00, G:0.01, T:0.60
Consensus pattern (25 bp):
AATATTATTATATTATTTTTTAAAA
Found at i:25746960 original size:22 final size:21
Alignment explanation
Indices: 25746924--25746964 Score: 64
Period size: 22 Copynumber: 1.9 Consensus size: 21
25746914 AAAATTGTTT
25746924 TAATGTTGCACGTAATTTTCA
1 TAATGTTGCACGTAATTTTCA
*
25746945 TAATAGTTGCATGTAATTTT
1 TAAT-GTTGCACGTAATTTT
25746965 TTATTTAATT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 4 0.22
22 14 0.78
ACGTcount: A:0.29, C:0.10, G:0.15, T:0.46
Consensus pattern (21 bp):
TAATGTTGCACGTAATTTTCA
Found at i:25755081 original size:19 final size:19
Alignment explanation
Indices: 25755030--25755100 Score: 63
Period size: 20 Copynumber: 3.6 Consensus size: 19
25755020 ATTACAAAAA
* * *
25755030 AAAAATCAAAGTAATTTTC
1 AAAATTCAAAATAATTTTT
*
25755049 AAAATTTGAAAATAATTTTT
1 AAAA-TTCAAAATAATTTTT
*
25755069 AAAATTCAAAAT-ATTTAT
1 AAAATTCAAAATAATTTTT
25755087 AGAAATTCTAAAAT
1 A-AAATTC-AAAAT
25755101 TTATATTTAA
Statistics
Matches: 43, Mismatches: 6, Indels: 5
0.80 0.11 0.09
Matches are distributed among these distances:
18 6 0.14
19 17 0.40
20 20 0.47
ACGTcount: A:0.54, C:0.06, G:0.04, T:0.37
Consensus pattern (19 bp):
AAAATTCAAAATAATTTTT
Found at i:25755102 original size:18 final size:19
Alignment explanation
Indices: 25755057--25755105 Score: 57
Period size: 19 Copynumber: 2.6 Consensus size: 19
25755047 TCAAAATTTG
*
25755057 AAAATAATTTTTA-AAATTC
1 AAAAT-ATTTATAGAAATTC
25755076 AAAATATTTATAGAAATTC
1 AAAATATTTATAGAAATTC
*
25755095 TAAA-ATTTATA
1 AAAATATTTATA
25755106 TTTAAAAAAA
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
18 13 0.48
19 14 0.52
ACGTcount: A:0.53, C:0.04, G:0.02, T:0.41
Consensus pattern (19 bp):
AAAATATTTATAGAAATTC
Found at i:25755167 original size:20 final size:20
Alignment explanation
Indices: 25755125--25755167 Score: 52
Period size: 20 Copynumber: 2.1 Consensus size: 20
25755115 ATTATTTTTT
*
25755125 TAAAAAATCTAACAAATATA
1 TAAAAAATCTAAAAAATATA
*
25755145 TAAAAAATTTAATAAAATA-A
1 TAAAAAATCTAA-AAAATATA
25755165 TAA
1 TAA
25755168 TTTTGGAATC
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
20 15 0.75
21 5 0.25
ACGTcount: A:0.67, C:0.05, G:0.00, T:0.28
Consensus pattern (20 bp):
TAAAAAATCTAAAAAATATA
Found at i:25755480 original size:21 final size:21
Alignment explanation
Indices: 25755456--25755495 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
25755446 ACCTTTTCTA
*
25755456 AAGTTAAAAGTCAAAACTATC
1 AAGTTAAAAGGCAAAACTATC
25755477 AAGTTAAAAGGCAAAACTA
1 AAGTTAAAAGGCAAAACTA
25755496 CATTGTTTTG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.55, C:0.12, G:0.12, T:0.20
Consensus pattern (21 bp):
AAGTTAAAAGGCAAAACTATC
Found at i:25759362 original size:17 final size:17
Alignment explanation
Indices: 25759340--25759392 Score: 70
Period size: 17 Copynumber: 2.9 Consensus size: 17
25759330 TCAAACAATA
25759340 ATAAAAATTATAAAAAT
1 ATAAAAATTATAAAAAT
*
25759357 ATAAAAATTATTAAGAATT
1 ATAAAAATTA-TAA-AAAT
25759376 ATAAGAAATTATAAAAA
1 ATAA-AAATTATAAAAA
25759393 GATTATTGAA
Statistics
Matches: 31, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
17 10 0.32
18 5 0.16
19 10 0.32
20 6 0.19
ACGTcount: A:0.66, C:0.00, G:0.04, T:0.30
Consensus pattern (17 bp):
ATAAAAATTATAAAAAT
Found at i:25759369 original size:20 final size:20
Alignment explanation
Indices: 25759346--25759392 Score: 53
Period size: 19 Copynumber: 2.4 Consensus size: 20
25759336 AATAATAAAA
25759346 ATTATAAAAATATAA-AAATT
1 ATTA-AAAAATATAAGAAATT
* *
25759366 ATTAAGAATTATAAGAAATT
1 ATTAAAAAATATAAGAAATT
25759386 A-TAAAAA
1 ATTAAAAA
25759393 GATTATTGAA
Statistics
Matches: 23, Mismatches: 3, Indels: 3
0.79 0.10 0.10
Matches are distributed among these distances:
19 13 0.57
20 10 0.43
ACGTcount: A:0.64, C:0.00, G:0.04, T:0.32
Consensus pattern (20 bp):
ATTAAAAAATATAAGAAATT
Found at i:25759388 original size:10 final size:9
Alignment explanation
Indices: 25759340--25759392 Score: 72
Period size: 10 Copynumber: 5.8 Consensus size: 9
25759330 TCAAACAATA
25759340 ATAAAAATT
1 ATAAAAATT
25759349 ATAAAAA-T
1 ATAAAAATT
25759357 ATAAAAATT
1 ATAAAAATT
*
25759366 ATTAAGAATT
1 A-TAAAAATT
25759376 ATAAGAAATT
1 ATAA-AAATT
25759386 ATAAAAA
1 ATAAAAA
25759393 GATTATTGAA
Statistics
Matches: 39, Mismatches: 2, Indels: 6
0.83 0.04 0.13
Matches are distributed among these distances:
8 8 0.21
9 15 0.38
10 16 0.41
ACGTcount: A:0.66, C:0.00, G:0.04, T:0.30
Consensus pattern (9 bp):
ATAAAAATT
Found at i:25759762 original size:10 final size:10
Alignment explanation
Indices: 25759747--25759813 Score: 59
Period size: 10 Copynumber: 6.6 Consensus size: 10
25759737 TCTGGACATT
25759747 ATTTTTAATA
1 ATTTTTAATA
25759757 ATTTTTAGATA
1 ATTTTTA-ATA
*
25759768 A-GTTTAATA
1 ATTTTTAATA
25759777 ATTTATT-ATAA
1 ATTT-TTAAT-A
*
25759788 ATTTTAAATA
1 ATTTTTAATA
25759798 ATTCTTT-ATA
1 ATT-TTTAATA
25759808 ATTTTT
1 ATTTTT
25759814 TTTAAAAAAG
Statistics
Matches: 47, Mismatches: 4, Indels: 13
0.73 0.06 0.20
Matches are distributed among these distances:
9 7 0.15
10 25 0.53
11 15 0.32
ACGTcount: A:0.39, C:0.01, G:0.03, T:0.57
Consensus pattern (10 bp):
ATTTTTAATA
Found at i:25759799 original size:21 final size:19
Alignment explanation
Indices: 25759749--25759812 Score: 67
Period size: 20 Copynumber: 3.2 Consensus size: 19
25759739 TGGACATTAT
*
25759749 TTTTAATAATTTTTAGATAA
1 TTTTAATAATTTTTATA-AA
*
25759769 GTTTAATAATTTATTATAAA
1 TTTTAATAATTT-TTATAAA
25759789 TTTTAAATAATTCTTTAT-AA
1 TTTT-AATAATT-TTTATAAA
25759809 TTTT
1 TTTT
25759813 TTTTAAAAAA
Statistics
Matches: 38, Mismatches: 3, Indels: 6
0.81 0.06 0.13
Matches are distributed among these distances:
20 22 0.58
21 15 0.39
22 1 0.03
ACGTcount: A:0.39, C:0.02, G:0.03, T:0.56
Consensus pattern (19 bp):
TTTTAATAATTTTTATAAA
Found at i:25759813 original size:21 final size:21
Alignment explanation
Indices: 25759747--25759813 Score: 59
Period size: 21 Copynumber: 3.2 Consensus size: 21
25759737 TCTGGACATT
* *
25759747 ATTTTTAATAATTT-TTAGATA
1 ATTTTAAATAATTTATTATA-A
*
25759768 AGTTT-AATAATTTATTATAA
1 ATTTTAAATAATTTATTATAA
25759788 ATTTTAAATAATTCT-TTATAA
1 ATTTTAAATAATT-TATTATAA
*
25759809 TTTTT
1 ATTTT
25759814 TTTAAAAAAG
Statistics
Matches: 39, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
20 13 0.33
21 25 0.64
22 1 0.03
ACGTcount: A:0.39, C:0.01, G:0.03, T:0.57
Consensus pattern (21 bp):
ATTTTAAATAATTTATTATAA
Found at i:25759924 original size:17 final size:18
Alignment explanation
Indices: 25759902--25759949 Score: 62
Period size: 19 Copynumber: 2.7 Consensus size: 18
25759892 TATTAAGGAA
*
25759902 TTTTATTTTTT-TAGATT
1 TTTTATTTTTTAAAGATT
*
25759919 TTTTATTTCTTTAAATATT
1 TTTTATTT-TTTAAAGATT
25759938 TTTTATTTTTTA
1 TTTTATTTTTTA
25759950 TTAGATGGGT
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
17 8 0.30
18 7 0.26
19 12 0.44
ACGTcount: A:0.21, C:0.02, G:0.02, T:0.75
Consensus pattern (18 bp):
TTTTATTTTTTAAAGATT
Found at i:25761866 original size:12 final size:12
Alignment explanation
Indices: 25761849--25761892 Score: 52
Period size: 12 Copynumber: 3.5 Consensus size: 12
25761839 ACGAATAACC
25761849 AAATAAAAAATT
1 AAATAAAAAATT
*
25761861 AAATAAAAAAAT
1 AAATAAAAAATT
*
25761873 AACAAAAAATAATT
1 AA-ATAAAA-AATT
25761887 AAATAA
1 AAATAA
25761893 GGTTAATAGT
Statistics
Matches: 26, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
12 13 0.50
13 8 0.31
14 5 0.19
ACGTcount: A:0.77, C:0.02, G:0.00, T:0.20
Consensus pattern (12 bp):
AAATAAAAAATT
Found at i:25765295 original size:29 final size:29
Alignment explanation
Indices: 25765253--25765511 Score: 181
Period size: 29 Copynumber: 8.9 Consensus size: 29
25765243 TGTGCTAAAA
** *
25765253 CGATGGTTGTAACCATCCTTTTTCATATT
1 CGATGGTCATAACCATCCCTTTTCATATT
* *
25765282 CGATGGTCAAAACCATCCCTTTTCATTAAT
1 CGATGGTCATAACCATCCCTTTTCA-TATT
* *
25765312 CGACGGTCATCACCATCCCTTTTCATAGTT
1 CGATGGTCATAACCATCCCTTTTCATA-TT
* *
25765342 -GATGGTCGTCACCATCCCTTTTCATAATT
1 CGATGGTCATAACCATCCCTTTTCAT-ATT
* * *
25765371 -AATAG-C-TGAAGCTATCCCTTTTCATATT
1 CGATGGTCAT-AA-CCATCCCTTTTCATATT
** *
25765399 CGATGGTTGTCACCATCCCTTTTCATAGTT
1 CGATGGTCATAACCATCCCTTTTCATA-TT
* * *
25765429 -GATGGTCATCACCTTCCCATTTCATAATT
1 CGATGGTCATAACCATCCCTTTTCAT-ATT
* * * *
25765458 -AATAGTCGA-AGCTATCCCTTTTCATATT
1 CGATGGTC-ATAACCATCCCTTTTCATATT
* *
25765486 CGATGGTCGTCACCATCCCTTTTCAT
1 CGATGGTCATAACCATCCCTTTTCAT
25765512 TGGTCGATGA
Statistics
Matches: 180, Mismatches: 37, Indels: 26
0.74 0.15 0.11
Matches are distributed among these distances:
27 1 0.01
28 8 0.04
29 138 0.77
30 32 0.18
31 1 0.01
ACGTcount: A:0.23, C:0.27, G:0.13, T:0.38
Consensus pattern (29 bp):
CGATGGTCATAACCATCCCTTTTCATATT
Found at i:25765320 original size:30 final size:30
Alignment explanation
Indices: 25765263--25765337 Score: 98
Period size: 30 Copynumber: 2.5 Consensus size: 30
25765253 CGATGGTTGT
* * *
25765263 AACCATCCTTTTTCA-TATTCGATGGTCAA
1 AACCATCCCTTTTCATTAATCGACGGTCAA
*
25765292 AACCATCCCTTTTCATTAATCGACGGTCAT
1 AACCATCCCTTTTCATTAATCGACGGTCAA
*
25765322 CACCATCCCTTTTCAT
1 AACCATCCCTTTTCAT
25765338 AGTTGATGGT
Statistics
Matches: 40, Mismatches: 5, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
29 14 0.35
30 26 0.65
ACGTcount: A:0.25, C:0.31, G:0.08, T:0.36
Consensus pattern (30 bp):
AACCATCCCTTTTCATTAATCGACGGTCAA
Found at i:25765435 original size:87 final size:87
Alignment explanation
Indices: 25765296--25765511 Score: 344
Period size: 87 Copynumber: 2.5 Consensus size: 87
25765286 GGTCAAAACC
* * * * *
25765296 ATCCCTTTTCATTAATCGACGGTCATCACCATCCCTTTTCATAGTTGATGGTCGTCACCATCCCT
1 ATCCCTTTTCA-TATTCGATGGTCGTCACCATCCCTTTTCATAGTTGATGGTCATCACCATCCCA
25765361 TTTCATAATTAATAG-CTGAAGCT
65 TTTCATAATTAATAGTC-GAAGCT
* *
25765384 ATCCCTTTTCATATTCGATGGTTGTCACCATCCCTTTTCATAGTTGATGGTCATCACCTTCCCAT
1 ATCCCTTTTCATATTCGATGGTCGTCACCATCCCTTTTCATAGTTGATGGTCATCACCATCCCAT
25765449 TTCATAATTAATAGTCGAAGCT
66 TTCATAATTAATAGTCGAAGCT
25765471 ATCCCTTTTCATATTCGATGGTCGTCACCATCCCTTTTCAT
1 ATCCCTTTTCATATTCGATGGTCGTCACCATCCCTTTTCAT
25765512 TGGTCGATGA
Statistics
Matches: 119, Mismatches: 8, Indels: 3
0.92 0.06 0.02
Matches are distributed among these distances:
87 107 0.90
88 12 0.10
ACGTcount: A:0.22, C:0.27, G:0.12, T:0.38
Consensus pattern (87 bp):
ATCCCTTTTCATATTCGATGGTCGTCACCATCCCTTTTCATAGTTGATGGTCATCACCATCCCAT
TTCATAATTAATAGTCGAAGCT
Found at i:25765452 original size:58 final size:58
Alignment explanation
Indices: 25765272--25765511 Score: 204
Period size: 58 Copynumber: 4.1 Consensus size: 58
25765262 TAACCATCCT
*** * * *
25765272 TTTTCATATTCGATGGTCAAAACCATCCCTTTTCATTAATCGACGGTCATCACCATCCC
1 TTTTCATATTCGATGGTCGTCACCATCCCTTTTCA-TAATTGATGGTCATCACCTTCCC
* * * *
25765331 TTTTCATAGTT-GATGGTCGTCACCATCCCTTTTCATAATTAATAG-C-TGAAGCTATCCC
1 TTTTCATA-TTCGATGGTCGTCACCATCCCTTTTCATAATTGATGGTCAT-CACCT-TCCC
* *
25765389 TTTTCATATTCGATGGTTGTCACCATCCCTTTTCATAGTTGATGGTCATCACCTTCCC
1 TTTTCATATTCGATGGTCGTCACCATCCCTTTTCATAATTGATGGTCATCACCTTCCC
* * * * * * *
25765447 ATTTCATAATT-AATAGTCG-AAGCTATCCCTTTTCAT-ATTCGATGGTCGTCACCATCCC
1 TTTTCAT-ATTCGATGGTCGTCA-CCATCCCTTTTCATAATT-GATGGTCATCACCTTCCC
25765505 TTTTCAT
1 TTTTCAT
25765512 TGGTCGATGA
Statistics
Matches: 146, Mismatches: 26, Indels: 19
0.76 0.14 0.10
Matches are distributed among these distances:
56 1 0.01
57 8 0.05
58 98 0.67
59 36 0.25
60 3 0.02
ACGTcount: A:0.23, C:0.27, G:0.12, T:0.38
Consensus pattern (58 bp):
TTTTCATATTCGATGGTCGTCACCATCCCTTTTCATAATTGATGGTCATCACCTTCCC
Found at i:25769898 original size:39 final size:40
Alignment explanation
Indices: 25769813--25769907 Score: 111
Period size: 40 Copynumber: 2.4 Consensus size: 40
25769803 GACTATTTGT
** *
25769813 GGCACTTAGTGTGCGATTCGACATAGTTTCGGCTATATAT
1 GGCACTTAGTGTGCGATTCGACATAGCGTCGGCTATATAC
* * * *
25769853 GACACTTAGTGTGCGATTTGAGATAGCGT-GGCTATGTAC
1 GGCACTTAGTGTGCGATTCGACATAGCGTCGGCTATATAC
*
25769892 GGCACTTAGTTTGCGA
1 GGCACTTAGTGTGCGA
25769908 GATATCAAGT
Statistics
Matches: 46, Mismatches: 9, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
39 22 0.48
40 24 0.52
ACGTcount: A:0.22, C:0.17, G:0.28, T:0.33
Consensus pattern (40 bp):
GGCACTTAGTGTGCGATTCGACATAGCGTCGGCTATATAC
Found at i:25769934 original size:28 final size:28
Alignment explanation
Indices: 25769892--25769964 Score: 92
Period size: 28 Copynumber: 2.6 Consensus size: 28
25769882 GGCTATGTAC
* *
25769892 GGCACTTAGTTTGCGAGATATCAAGTGT
1 GGCACTTAGTGTGCGAGATATCAAGTAT
* **
25769920 GGCACTTAGTGTGCGAAATATTGAGTAT
1 GGCACTTAGTGTGCGAGATATCAAGTAT
*
25769948 GGCACTAAGTGTGCGAG
1 GGCACTTAGTGTGCGAG
25769965 GCATTGAGTA
Statistics
Matches: 38, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
28 38 1.00
ACGTcount: A:0.26, C:0.14, G:0.32, T:0.29
Consensus pattern (28 bp):
GGCACTTAGTGTGCGAGATATCAAGTAT
Found at i:25769970 original size:28 final size:28
Alignment explanation
Indices: 25769919--25769975 Score: 78
Period size: 28 Copynumber: 2.0 Consensus size: 28
25769909 ATATCAAGTG
* *
25769919 TGGCACTTAGTGTGCGAAATATTGAGTA
1 TGGCACTAAGTGTGCGAAACATTGAGTA
**
25769947 TGGCACTAAGTGTGCGAGGCATTGAGTA
1 TGGCACTAAGTGTGCGAAACATTGAGTA
25769975 T
1 T
25769976 TCAACGACAT
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
28 25 1.00
ACGTcount: A:0.26, C:0.12, G:0.32, T:0.30
Consensus pattern (28 bp):
TGGCACTAAGTGTGCGAAACATTGAGTA
Found at i:25775070 original size:14 final size:13
Alignment explanation
Indices: 25775031--25775070 Score: 53
Period size: 14 Copynumber: 2.9 Consensus size: 13
25775021 GTGTTACAAT
*
25775031 TTAATTAAAAAAA
1 TTAATTAATAAAA
25775044 TTAATTAATTAAAA
1 TTAATTAA-TAAAA
25775058 TTAATTTAATAAA
1 TTAA-TTAATAAA
25775071 TAATGTTTCT
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
13 8 0.33
14 12 0.50
15 4 0.17
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (13 bp):
TTAATTAATAAAA
Found at i:25781237 original size:24 final size:24
Alignment explanation
Indices: 25781210--25781258 Score: 89
Period size: 24 Copynumber: 2.0 Consensus size: 24
25781200 ACTGAGCTGT
*
25781210 AAGGTTATGACTAATTTGAGGGCA
1 AAGGTTATGACCAATTTGAGGGCA
25781234 AAGGTTATGACCAATTTGAGGGCA
1 AAGGTTATGACCAATTTGAGGGCA
25781258 A
1 A
25781259 TGCTTGCTCA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.35, C:0.10, G:0.29, T:0.27
Consensus pattern (24 bp):
AAGGTTATGACCAATTTGAGGGCA
Found at i:25800879 original size:40 final size:40
Alignment explanation
Indices: 25800780--25801076 Score: 406
Period size: 40 Copynumber: 7.5 Consensus size: 40
25800770 AAGCCAAGTA
* * * *
25800780 CCTTCGGGATTTA-ACCGGATATAGCT-ACTCGCTC-AATG
1 CCTTCGGGACTTAGCCCGGATATA-ATAACTCGCACAAATG
* * * *
25800818 CCTTCAGGACATT-GCCTGGATATAGTAACTCGCACCAATG
1 CCTTCGGGAC-TTAGCCCGGATATAATAACTCGCACAAATG
* *
25800858 CCTTCGGGACTTAGCCCGGATATAGTAGCTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAATAACTCGCACAAATG
*
25800898 CCTTCGGGACTTAGCCCGGATGTAATAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAATAACTCGCACAAATG
*
25800938 CCTTCGGGACTTAGCCCGGATGTAATAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAATAACTCGCACAAATG
*
25800978 CCTTCGGGACTTAGCCCGGATGTAATAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAATAACTCGCACAAATG
*
25801018 CCTTCGGGACTTAGCCCGGATGA-ACTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGAT-ATAATAACTCGCACAAATG
25801058 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
25801077 TTATCATCCG
Statistics
Matches: 238, Mismatches: 15, Indels: 10
0.90 0.06 0.04
Matches are distributed among these distances:
38 9 0.04
39 19 0.08
40 210 0.88
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAATAACTCGCACAAATG
Found at i:25809037 original size:40 final size:40
Alignment explanation
Indices: 25808956--25809158 Score: 295
Period size: 40 Copynumber: 5.1 Consensus size: 40
25808946 CGAGATTTAA
*
25808956 CCGGATATAGCT-ACTCGCTC-AATGCCTTCGGGACATT-GC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGAC-TTAGC
*
25808995 CCGGATATAGTAACTCGCACCAATGCCTTCGGGACTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
25809035 CCGGATATAGTAGCTCGCACAAATGCCTTCGGGACTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* * *
25809075 CCGGATGTAATAACTCACACAAATGCCTTCGGGACTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
25809115 CCGGATGTAATAACTCGCACAAATGCCTTCGGGACTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
25809155 CCGG
1 CCGG
25809159 TTATCATCCG
Statistics
Matches: 153, Mismatches: 8, Indels: 5
0.92 0.05 0.03
Matches are distributed among these distances:
38 1 0.01
39 19 0.12
40 133 0.87
ACGTcount: A:0.25, C:0.29, G:0.23, T:0.23
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:25823101 original size:14 final size:14
Alignment explanation
Indices: 25823082--25823112 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
25823072 TTTTCTTGGC
*
25823082 CGGTTCGGTTCACT
1 CGGTTCGGTTCAAT
25823096 CGGTTCGGTTCAAT
1 CGGTTCGGTTCAAT
25823110 CGG
1 CGG
25823113 ACTATTTTTT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.10, C:0.26, G:0.32, T:0.32
Consensus pattern (14 bp):
CGGTTCGGTTCAAT
Found at i:25824036 original size:95 final size:96
Alignment explanation
Indices: 25823865--25824103 Score: 313
Period size: 95 Copynumber: 2.5 Consensus size: 96
25823855 AAAAGGGTAA
* * * * * **
25823865 AATTTCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATATATCAGTGCTGATGCCATG
1 AATTCCGATGCCATGTTCCAAACATGGTCTTACACTGG--CTCACATATCAGTACCAATGCCATG
* * *
25823930 TCCCAGACATGGTTTTACACT-GATCTACATAAT
64 TCCCAGACATGGTCTTACACTAGATCT-CACAAC
25823963 AATTCCGATGCCATGTTCCAAACATGGTCTTA-ACTGGCTCACATATCGAG-ACCAATGCCATGT
1 AATTCCGATGCCATGTTCCAAACATGGTCTTACACTGGCTCACATATC-AGTACCAATGCCATGT
25824026 CCCAGACATGGTCTTACACTAGATCTCACAAC
65 CCCAGACATGGTCTTACACTAGATCTCACAAC
* *
25824058 AATGCCGATGCCATGTTCTAAACATGGTCTTACACTGGCTCACATA
1 AATTCCGATGCCATGTTCCAAACATGGTCTTACACTGGCTCACATA
25824104 ACCCTAGTAT
Statistics
Matches: 126, Mismatches: 12, Indels: 8
0.86 0.08 0.05
Matches are distributed among these distances:
95 72 0.57
96 20 0.16
97 5 0.04
98 29 0.23
ACGTcount: A:0.28, C:0.27, G:0.17, T:0.28
Consensus pattern (96 bp):
AATTCCGATGCCATGTTCCAAACATGGTCTTACACTGGCTCACATATCAGTACCAATGCCATGTC
CCAGACATGGTCTTACACTAGATCTCACAAC
Found at i:25824083 original size:48 final size:49
Alignment explanation
Indices: 25823870--25824103 Score: 241
Period size: 48 Copynumber: 4.9 Consensus size: 49
25823860 GGTAAAATTT
* * *
25823870 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATATATCAGTGC
1 CGATGCCATGTCCCAGACATGGTCTTACACT-GATCTCACATATCAATGC
* * *
25823920 TGATGCCATGTCCCAGACATGGTTTTACACTGATCT-ACATAAT-AATTC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGATCTCACAT-ATCAATGC
* * * *
25823968 CGATGCCATGTTCCAAACATGGTCTTA-ACTG-GCTCACATATCGA-GAC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGATCTCACATATCAATG-C
*
25824015 CAATGCCATGTCCCAGACATGGTCTTACACTAGATCTCACA-A-CAATGC
1 CGATGCCATGTCCCAGACATGGTCTTACACT-GATCTCACATATCAATGC
* * * *
25824063 CGATGCCATGTTCTAAACATGGTCTTACACTG-GCTCACATA
1 CGATGCCATGTCCCAGACATGGTCTTACACTGATCTCACATA
25824104 ACCCTAGTAT
Statistics
Matches: 152, Mismatches: 23, Indels: 21
0.78 0.12 0.11
Matches are distributed among these distances:
46 10 0.07
47 36 0.24
48 62 0.41
49 9 0.06
50 35 0.23
ACGTcount: A:0.27, C:0.28, G:0.17, T:0.28
Consensus pattern (49 bp):
CGATGCCATGTCCCAGACATGGTCTTACACTGATCTCACATATCAATGC
Found at i:25827456 original size:31 final size:30
Alignment explanation
Indices: 25827416--25827476 Score: 86
Period size: 31 Copynumber: 2.0 Consensus size: 30
25827406 TTTTACGAGC
25827416 CTAGAGGCAAAATCGTAATTTTTGTGAAAGT
1 CTAGAGGCAAAATCGTAATTTTTGT-AAAGT
* * *
25827447 CTAGGGGCAAAATGGTCATTTTTGTAAAGT
1 CTAGAGGCAAAATCGTAATTTTTGTAAAGT
25827477 ATGAATTGTG
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
30 5 0.19
31 22 0.81
ACGTcount: A:0.33, C:0.10, G:0.25, T:0.33
Consensus pattern (30 bp):
CTAGAGGCAAAATCGTAATTTTTGTAAAGT
Found at i:25828102 original size:50 final size:50
Alignment explanation
Indices: 25828042--25828172 Score: 149
Period size: 50 Copynumber: 2.6 Consensus size: 50
25828032 TATGTGTTAG
* * *
25828042 TGTAATACCATGTCTAGGACATGGCATCGACACCT-ATAAATGAGAGCCAA
1 TGTAAGACCATGTCTGGGACATGGCATCGAC-CCTCATAAACGAGAGCCAA
* * * *
25828092 TGTAAGACCATGTCTGGGACATGGCATCG-CCCTCGGTATACGAGAGTCAG
1 TGTAAGACCATGTCTGGGACATGGCATCGACCCTC-ATAAACGAGAGCCAA
* *
25828142 TGTAAGACCATGTCTGGGAAATGACATCGAC
1 TGTAAGACCATGTCTGGGACATGGCATCGAC
25828173 TTTGATGTGT
Statistics
Matches: 69, Mismatches: 9, Indels: 5
0.83 0.11 0.06
Matches are distributed among these distances:
48 3 0.04
49 1 0.01
50 64 0.93
51 1 0.01
ACGTcount: A:0.31, C:0.22, G:0.25, T:0.22
Consensus pattern (50 bp):
TGTAAGACCATGTCTGGGACATGGCATCGACCCTCATAAACGAGAGCCAA
Found at i:25831314 original size:49 final size:50
Alignment explanation
Indices: 25831234--25831466 Score: 220
Period size: 49 Copynumber: 4.7 Consensus size: 50
25831224 ATCTATTGTG
*
25831234 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
* ***
25831284 -GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATACGTACCCA-ATAACTT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTA-CCAGATAA-TT
* * * * * ** **
25831334 CGATCACGTGTGTAGTACTAAGTACAAGCTACTACGTGTATTAGATGGTT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
** * ** *
25831384 AGGTCATGTGTGTAGTACTAAGTGTAGGCTACTACGTGTACTGGTTAATT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
* * *
25831434 -GGTCGCATATGTAGTACTAATTGCAGGCTACTA
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTA
25831467 AGCATACTAG
Statistics
Matches: 145, Mismatches: 34, Indels: 9
0.77 0.18 0.05
Matches are distributed among these distances:
49 65 0.45
50 47 0.32
51 33 0.23
ACGTcount: A:0.27, C:0.17, G:0.25, T:0.31
Consensus pattern (50 bp):
AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
Found at i:25834226 original size:20 final size:20
Alignment explanation
Indices: 25834201--25834247 Score: 94
Period size: 20 Copynumber: 2.4 Consensus size: 20
25834191 TCGTAGGCCC
25834201 GTGTATGGGACATTATGCAT
1 GTGTATGGGACATTATGCAT
25834221 GTGTATGGGACATTATGCAT
1 GTGTATGGGACATTATGCAT
25834241 GTGTATG
1 GTGTATG
25834248 AAAAGTTTTG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 27 1.00
ACGTcount: A:0.23, C:0.09, G:0.32, T:0.36
Consensus pattern (20 bp):
GTGTATGGGACATTATGCAT
Found at i:25837257 original size:24 final size:25
Alignment explanation
Indices: 25837199--25837261 Score: 76
Period size: 23 Copynumber: 2.5 Consensus size: 25
25837189 TCAAGTACTT
25837199 AATTGGGACAAAATACCTCAAGTATCA
1 AATTGGGA-AAAA-ACCTCAAGTATCA
* *
25837226 TATT-GGAAAAAA-CTTAAGTATCA
1 AATTGGGAAAAAACCTCAAGTATCA
25837249 AATTGGGAAAAAA
1 AATTGGGAAAAAA
25837262 AGCTTAATTA
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
23 13 0.41
24 9 0.28
25 4 0.12
26 3 0.09
27 3 0.09
ACGTcount: A:0.49, C:0.11, G:0.16, T:0.24
Consensus pattern (25 bp):
AATTGGGAAAAAACCTCAAGTATCA
Found at i:25842528 original size:15 final size:16
Alignment explanation
Indices: 25842508--25842542 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
25842498 TTTTGCCAAG
*
25842508 TTTTGT-TCAAAATGA
1 TTTTGTATCAAAATAA
25842523 TTTTGTATCAAAATAA
1 TTTTGTATCAAAATAA
25842539 TTTT
1 TTTT
25842543 CCAAGTAAAG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 6 0.33
16 12 0.67
ACGTcount: A:0.34, C:0.06, G:0.09, T:0.51
Consensus pattern (16 bp):
TTTTGTATCAAAATAA
Found at i:25842706 original size:20 final size:20
Alignment explanation
Indices: 25842672--25842719 Score: 55
Period size: 19 Copynumber: 2.5 Consensus size: 20
25842662 AATTTTTTTT
25842672 CATTCA-TTATCAAAAATTGG
1 CATTCATTTATC-AAAATTGG
**
25842692 CATTCATTTAT-AAAATTTT
1 CATTCATTTATCAAAATTGG
25842711 CATTCATTT
1 CATTCATTT
25842720 TCAGTTAAAG
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
19 15 0.60
20 6 0.24
21 4 0.16
ACGTcount: A:0.35, C:0.15, G:0.04, T:0.46
Consensus pattern (20 bp):
CATTCATTTATCAAAATTGG
Found at i:25848660 original size:47 final size:47
Alignment explanation
Indices: 25848601--25849465 Score: 1060
Period size: 47 Copynumber: 17.9 Consensus size: 47
25848591 TAGTATGGCG
*
25848601 TAATGGCTGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
25848648 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCC
*
25848697 TAATGGCCGATGTGATGAATACTGAAAGTGTATATAT-T-AT-AGGCC
1 TAATGGCCGATGTGATGAAT-GTGAAAGTGTATATATGTGATAAGGCC
25848742 TAATGGCCGATGTGATGAATGTGAAAGT-TATATATGTGAT-AGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
25848787 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
25848834 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
25848881 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
* *
25848928 TAATGGTCGATGTGATGAA-ATGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
** **
25848974 TAATGGCCGATGTGTGATAAGGCCTAATG-G-CCGATGTGATGA-ATGTGA-AAGTGTA
1 TAATGGCCGA--TGTGAT---G---AATGTGAAAG-TGT-AT-ATATGTGATAAG-GCC
*** * * * *
25849029 TAATGTGATAAGGCCTAATGGCCGATGTGATGAA-TGTGA-A-A-GTGTATATATGTG-A
1 TAATG-GCCGATG--TGAT-G--AATGTGA--AAGTGT-ATATATGTG-ATA-A-G-GCC
*
25849084 TAAGGCCTAATGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAA----T--GGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
25849137 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCC
25849186 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGT-ATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
25849232 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCC
25849281 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
25849328 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
* *
25849375 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGACAGGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
* * * * * *
25849422 GAGTGGCCAACGTGATGGATGTGAAAGTGTATAAATGTGATAAG
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAG
25849466 TCCCGAAGGG
Statistics
Matches: 732, Mismatches: 39, Indels: 94
0.85 0.05 0.11
Matches are distributed among these distances:
43 7 0.01
44 8 0.01
45 60 0.08
46 86 0.12
47 325 0.44
48 22 0.03
49 123 0.17
50 8 0.01
51 1 0.00
52 4 0.01
53 15 0.02
54 19 0.03
55 34 0.05
56 12 0.02
57 1 0.00
58 3 0.00
59 1 0.00
60 3 0.00
ACGTcount: A:0.32, C:0.09, G:0.29, T:0.30
Consensus pattern (47 bp):
TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
Found at i:25848989 original size:24 final size:24
Alignment explanation
Indices: 25848962--25849011 Score: 100
Period size: 24 Copynumber: 2.1 Consensus size: 24
25848952 AGTGTATATA
25848962 TGTGATAAGGCCTAATGGCCGATG
1 TGTGATAAGGCCTAATGGCCGATG
25848986 TGTGATAAGGCCTAATGGCCGATG
1 TGTGATAAGGCCTAATGGCCGATG
25849010 TG
1 TG
25849012 ATGAATGTGA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.24, C:0.16, G:0.34, T:0.26
Consensus pattern (24 bp):
TGTGATAAGGCCTAATGGCCGATG
Found at i:25848992 original size:70 final size:70
Alignment explanation
Indices: 25848916--25849057 Score: 250
Period size: 70 Copynumber: 2.0 Consensus size: 70
25848906 AGTGTATATA
*
25848916 TGTGATAAGGCCTAATGGTCGATGTGATGAA-ATGAAAGTGTATATATGTGATAAGGCCTAATGG
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATATGAAAGTGTATA-ATGTGATAAGGCCTAATGG
25848980 CCGATG
65 CCGATG
*
25848986 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAATGTGATAAGGCCTAATGGC
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATATGAAAGTGTATAATGTGATAAGGCCTAATGGC
25849051 CGATG
66 CGATG
25849056 TG
1 TG
25849058 ATGAATGTGA
Statistics
Matches: 69, Mismatches: 2, Indels: 2
0.95 0.03 0.03
Matches are distributed among these distances:
70 57 0.83
71 12 0.17
ACGTcount: A:0.30, C:0.11, G:0.31, T:0.28
Consensus pattern (70 bp):
TGTGATAAGGCCTAATGGCCGATGTGATGAATATGAAAGTGTATAATGTGATAAGGCCTAATGGC
CGATG
Found at i:25848999 original size:117 final size:116
Alignment explanation
Indices: 25848869--25849103 Score: 427
Period size: 117 Copynumber: 2.0 Consensus size: 116
25848859 AGTGTATATA
25848869 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGG
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA-ATGTGATAAGGCCTAATGG
*
25848934 TCGATGTGATGAA-ATGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATG
65 CCGATGTGATGAATATGAAAGTGTATATATGTGATAAGGCCTAAT-GCCGATG
25848986 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAATGTGATAAGGCCTAATGGC
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAATGTGATAAGGCCTAATGGC
*
25849051 CGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGCCGATG
66 CGATGTGATGAATATGAAAGTGTATATATGTGATAAGGCCTAATGCCGATG
25849102 TG
1 TG
25849104 ATGAATGTGA
Statistics
Matches: 115, Mismatches: 2, Indels: 3
0.96 0.02 0.03
Matches are distributed among these distances:
116 40 0.35
117 75 0.65
ACGTcount: A:0.31, C:0.10, G:0.30, T:0.29
Consensus pattern (116 bp):
TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAATGTGATAAGGCCTAATGGC
CGATGTGATGAATATGAAAGTGTATATATGTGATAAGGCCTAATGCCGATG
Found at i:25849082 original size:163 final size:164
Alignment explanation
Indices: 25848822--25849150 Score: 617
Period size: 163 Copynumber: 2.0 Consensus size: 164
25848812 AGTGTATATA
25848822 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGG
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGG
*
25848887 CCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGTCGATGTGATGAA-ATGA
66 CCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAAT-GCCGATGTGATGAATATGA
25848951 AAGTGTATATATGTGATAAGGCCTAATGGCCGATG
130 AAGTGTATATATGTGATAAGGCCTAATGGCCGATG
25848986 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA-ATGTGATAAGGCCTAATGG
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGG
*
25849050 CCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGCCGATGTGATGAATGTGAA
66 CCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGCCGATGTGATGAATATGAA
25849115 AGTGTATATATGTGATAAGGCCTAATGGCCGATG
131 AGTGTATATATGTGATAAGGCCTAATGGCCGATG
25849149 TG
1 TG
25849151 ATGAATGTGA
Statistics
Matches: 162, Mismatches: 2, Indels: 3
0.97 0.01 0.02
Matches are distributed among these distances:
162 13 0.08
163 104 0.64
164 45 0.28
ACGTcount: A:0.31, C:0.09, G:0.30, T:0.29
Consensus pattern (164 bp):
TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGG
CCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGCCGATGTGATGAATATGAA
AGTGTATATATGTGATAAGGCCTAATGGCCGATG
Found at i:25849241 original size:142 final size:140
Alignment explanation
Indices: 25848986--25849465 Score: 820
Period size: 142 Copynumber: 3.4 Consensus size: 140
25848976 ATGGCCGATG
25848986 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAATGTGATAAGGCCTAATGGC
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAATGTGATAAGGCCTAATGGC
25849051 CGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAAT-GCCGATGTGATGAATGTGAA
66 CGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
25849115 AGTGTATATA
131 AGTGTATATA
25849125 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAAT
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATA-ATGTGATAAGGCCTAAT
25849190 GGCCGATGTGATGAATGTGAAAGTGTATATATGT-ATAAGGCCTAATGGCCGATGTGATGAATGT
63 GGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
25849254 GAAAGTGTATATATA
128 GAAAGTG--TATATA
25849269 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGG
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA-ATGTGATAAGGCCTAATGG
25849334 CCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGA
65 CCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGA
25849399 AAGTGTATATA
130 AAGTGTATATA
* * * * * * *
25849410 TGTGACAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATAAATGTGATAAG
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT-AATGTGATAAG
25849466 TCCCGAAGGG
Statistics
Matches: 326, Mismatches: 7, Indels: 14
0.94 0.02 0.04
Matches are distributed among these distances:
139 41 0.13
141 69 0.21
142 132 0.40
143 37 0.11
144 47 0.14
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.29
Consensus pattern (140 bp):
TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAATGTGATAAGGCCTAATGGC
CGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
AGTGTATATA
Found at i:25849635 original size:32 final size:35
Alignment explanation
Indices: 25849583--25849656 Score: 91
Period size: 33 Copynumber: 2.1 Consensus size: 35
25849573 CCGAGCTCTA
*
25849583 AAGACCCGATGACTACGTGTGG-GATTTTGT-GGGT
1 AAGA-CCGATGACTACGTGTGGAGATTATGTCGGGT
*
25849617 AAGACCGAT-ACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCGATGACTACGTGTGGAGATTATGT-CGGGT
25849652 AAGAC
1 AAGAC
25849657 TTCGTAATAA
Statistics
Matches: 35, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
32 10 0.29
33 12 0.34
34 4 0.11
35 9 0.26
ACGTcount: A:0.24, C:0.16, G:0.32, T:0.27
Consensus pattern (35 bp):
AAGACCGATGACTACGTGTGGAGATTATGTCGGGT
Found at i:25850920 original size:40 final size:40
Alignment explanation
Indices: 25850865--25851125 Score: 409
Period size: 40 Copynumber: 6.6 Consensus size: 40
25850855 GAGAATTGAG
*
25850865 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCATGCT
1 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
25850905 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
25850945 AGTGATATATCCGGGCTAAGTCCCGA-GAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
25850984 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
* * *
25851024 AGTGATGTATCCGGGCTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
* * * *
25851064 AGTAATATATCCGTGCTAA-ACCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
* * *
25851103 GGTGTTATATCCGGGCTAGGTCC
1 AGTGATATATCCGGGCTAAGTCC
25851126 GAAGAGTAAT
Statistics
Matches: 204, Mismatches: 15, Indels: 4
0.91 0.07 0.02
Matches are distributed among these distances:
39 71 0.35
40 133 0.65
ACGTcount: A:0.23, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
Found at i:25850998 original size:79 final size:79
Alignment explanation
Indices: 25850865--25851125 Score: 407
Period size: 79 Copynumber: 3.3 Consensus size: 79
25850855 GAGAATTGAG
*
25850865 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCATGCTAGTGATATATCCGGGCTAAGTCCCG
1 AGTGATATATCCGGGCTAAGTCCCGA-GAGCATTCGTGCTAGTGATATATCCGGGCTAAGTCCCG
25850930 AGGAGCATTCGTGCT
65 AGGAGCATTCGTGCT
25850945 AGTGATATATCCGGGCTAAGTCCCGAGAGCATTCGTGCTAGTGATATATCCGGGCTAAGTCCCGA
1 AGTGATATATCCGGGCTAAGTCCCGAGAGCATTCGTGCTAGTGATATATCCGGGCTAAGTCCCGA
25851010 GGAGCATTCGTGCT
66 GGAGCATTCGTGCT
* * * * *
25851024 AGTGATGTATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTAATATATCCGTGCTAA-ACCCG
1 AGTGATATATCCGGGCTAAGTCCCG-AGAGCATTCGTGCTAGTGATATATCCGGGCTAAGTCCCG
*
25851088 AAGAGCATTCGTGCT
65 AGGAGCATTCGTGCT
* * *
25851103 GGTGTTATATCCGGGCTAGGTCC
1 AGTGATATATCCGGGCTAAGTCC
25851126 GAAGAGTAAT
Statistics
Matches: 168, Mismatches: 12, Indels: 3
0.92 0.07 0.02
Matches are distributed among these distances:
79 111 0.66
80 57 0.34
ACGTcount: A:0.23, C:0.22, G:0.28, T:0.26
Consensus pattern (79 bp):
AGTGATATATCCGGGCTAAGTCCCGAGAGCATTCGTGCTAGTGATATATCCGGGCTAAGTCCCGA
GGAGCATTCGTGCT
Found at i:25851076 original size:119 final size:119
Alignment explanation
Indices: 25850865--25851125 Score: 416
Period size: 119 Copynumber: 2.2 Consensus size: 119
25850855 GAGAATTGAG
25850865 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCATGCTAGTGATATATCCGGGCTAAGTCCCG
1 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCATGCTAGTGATATATCCGGGCTAAGTCCCG
* * *
25850930 AGGAGCATTCGTGCTAGTGATATATCCGGGCTAAGTCCCG-AGAGCATTCGTGCT
66 AAGAGCATTCGTGCTAGTAATATATCCGGGCTAA-ACCCGAAGAGCATTCGTGCT
* * *
25850984 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTTCCG
1 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCATGCTAGTGATATATCCGGGCTAAGTCCCG
*
25851049 AAGAGCATTCGTGCTAGTAATATATCCGTGCTAAACCCGAAGAGCATTCGTGCT
66 AAGAGCATTCGTGCTAGTAATATATCCGGGCTAAACCCGAAGAGCATTCGTGCT
* * *
25851103 GGTGTTATATCCGGGCTAGGTCC
1 AGTGATATATCCGGGCTAAGTCC
25851126 GAAGAGTAAT
Statistics
Matches: 131, Mismatches: 10, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
118 4 0.03
119 127 0.97
ACGTcount: A:0.23, C:0.22, G:0.28, T:0.26
Consensus pattern (119 bp):
AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCATGCTAGTGATATATCCGGGCTAAGTCCCG
AAGAGCATTCGTGCTAGTAATATATCCGGGCTAAACCCGAAGAGCATTCGTGCT
Found at i:25856133 original size:47 final size:47
Alignment explanation
Indices: 25855981--25856371 Score: 687
Period size: 47 Copynumber: 8.3 Consensus size: 47
25855971 TAGTATGGCG
*
25855981 TAATGGCTGATGTGATGAATGTG-AAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
25856027 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATAGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATAT-GTGATAAGGCC
*
25856075 TAATGGCCGATGTGATGAATATGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
*
25856122 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATCAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCC
25856171 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
25856218 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
*
25856265 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTAATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
* *
25856312 TAATGGTCG-TGTGATGAATATGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
25856358 TAATGGCCGATGTG
1 TAATGGCCGATGTG
25856372 TGATAAGGCC
Statistics
Matches: 330, Mismatches: 10, Indels: 9
0.95 0.03 0.03
Matches are distributed among these distances:
46 65 0.20
47 173 0.52
48 46 0.14
49 46 0.14
ACGTcount: A:0.32, C:0.08, G:0.29, T:0.30
Consensus pattern (47 bp):
TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
Found at i:25856221 original size:96 final size:96
Alignment explanation
Indices: 25855981--25856847 Score: 850
Period size: 96 Copynumber: 9.0 Consensus size: 96
25855971 TAGTATGGCG
*
25855981 TAATGGCTGATGTGATGAATGTG-AAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
25856045 ATGTGAAAGTGTATATATA-GTGATAAGGCC
66 ATGTGAAAGTGTATATATATGTGATAAGGCC
*
25856075 TAATGGCCGATGTGATGAATATGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
25856140 ATGTGAAAGTGTATATATATGTGATCAGGCC
66 ATGTGAAAGTGTATATATATGTGATAAGGCC
25856171 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
25856236 ATGTGAAAGTG--TATATATGTGATAAGGCC
66 ATGTGAAAGTGTATATATATGTGATAAGGCC
* *
25856265 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTAATAAGGCCTAATGGTCG-TGTGATGA
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
25856329 ATATGAAAGTG--TATATATGTGATAAGGCC
66 ATGTGAAAGTGTATATATATGTGATAAGGCC
* * **** * *** ****
25856358 TAATGGCCGATGTG-TGATAAG-GCCTAA-TG-GCCGATGTGATGAATGTGAAAGTGTATTATGT
1 TAATGGCCGATGTGATGA-ATGTG--AAAGTGTATATATGTGAT-AAGGCCTAA-TGGCCGATGT
* * * * **
25856419 GAT-AAGGCCT-AATG-GCCGATGTGATGAATGTGA-AAGTGTA
61 GATGAATG--TGAAAGTG--TATAT-AT--ATGTGATAAG-GCC
*** * * * * ** * * *
25856459 TATATGTGATAAGGCCTAATGGCATTTGTGA-TGAATATGAAAGTGTATATATGTG-ATAAGGCC
1 TA-ATG-GCCGATG--TGAT-GAATGTGAAAGTGTATAT--ATGTG-ATA-A-G-GCCT-A----
25856522 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
50 --ATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
*
25856571 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTAATAAGGCCTAATGGCCGATGTGATGA
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
25856636 ATGTGAAAGTGTATATATATGTGATAAGG-C
66 ATGTGAAAGTGTATATATATGTGATAAGGCC
*
25856666 TAATGGCTGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGG-CGATGTGATGA
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
25856730 ATGTGAAAGTG--TATATATGTGA-ATAGGCC
66 ATGTGAAAGTGTATATATATGTGATA-AGGCC
* * * * * *
25856759 TAATGGCCGATGTGATGAATGTGAAAGTGTATATA-GTGACAGGGCCGAGTGGCC-ACGTGATGG
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
25856822 ATGTGAAAGTGTATA-A-ATGTGATAAG
66 ATGTGAAAGTGTATATATATGTGATAAG
25856848 TCCGAAGGGC
Statistics
Matches: 644, Mismatches: 78, Indels: 104
0.78 0.09 0.13
Matches are distributed among these distances:
91 1 0.00
92 63 0.10
93 97 0.15
94 123 0.19
95 121 0.19
96 131 0.20
98 2 0.00
99 2 0.00
100 3 0.00
101 9 0.01
102 5 0.01
103 5 0.01
104 1 0.00
105 8 0.01
106 5 0.01
107 8 0.01
108 14 0.02
109 3 0.00
110 3 0.00
111 5 0.01
112 9 0.01
113 3 0.00
114 2 0.00
115 4 0.01
116 12 0.02
117 5 0.01
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.30
Consensus pattern (96 bp):
TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
ATGTGAAAGTGTATATATATGTGATAAGGCC
Found at i:25856375 original size:24 final size:24
Alignment explanation
Indices: 25856346--25856395 Score: 100
Period size: 24 Copynumber: 2.1 Consensus size: 24
25856336 AGTGTATATA
25856346 TGTGATAAGGCCTAATGGCCGATG
1 TGTGATAAGGCCTAATGGCCGATG
25856370 TGTGATAAGGCCTAATGGCCGATG
1 TGTGATAAGGCCTAATGGCCGATG
25856394 TG
1 TG
25856396 ATGAATGTGA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.24, C:0.16, G:0.34, T:0.26
Consensus pattern (24 bp):
TGTGATAAGGCCTAATGGCCGATG
Found at i:25856384 original size:70 final size:70
Alignment explanation
Indices: 25856304--25856441 Score: 242
Period size: 70 Copynumber: 2.0 Consensus size: 70
25856294 TATATATGTA
*
25856304 ATAAGGCCTAATGGTCG-TGTGATGAATATGAAAGTGTATATATGTGATAAGGCCTAATGGCCGA
1 ATAAGGCCTAATGGCCGATGTGATGAATATGAAAGTGTAT-TATGTGATAAGGCCTAATGGCCGA
25856368 TGTGTG
65 TGTGTG
*
25856374 ATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATTATGTGATAAGGCCTAATGGCCGAT
1 ATAAGGCCTAATGGCCGATGTGATGAATATGAAAGTGTATTATGTGATAAGGCCTAATGGCCGAT
25856439 GTG
66 GTG
25856442 ATGAATGTGA
Statistics
Matches: 65, Mismatches: 2, Indels: 2
0.94 0.03 0.03
Matches are distributed among these distances:
70 44 0.68
71 21 0.32
ACGTcount: A:0.30, C:0.11, G:0.30, T:0.29
Consensus pattern (70 bp):
ATAAGGCCTAATGGCCGATGTGATGAATATGAAAGTGTATTATGTGATAAGGCCTAATGGCCGAT
GTGTG
Found at i:25856388 original size:164 final size:163
Alignment explanation
Indices: 25856206--25856535 Score: 608
Period size: 164 Copynumber: 2.0 Consensus size: 163
25856196 AGTGTATATA
25856206 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGG
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT-TATGTGATAAGGCCTAATGG
25856271 CCGATGTGATGAATGTGAAAGTGTATATATGTAATAAGGCCTAATGGTC-GTGTGATGAATATGA
65 CCGATGTGATGAATGTGAAAGTGTATATATGTAATAAGGCCTAATGG-CAGTGTGATGAATATGA
25856335 AAGTGTATATATGTGATAAGGCCTAATGGCCGATG
129 AAGTGTATATATGTGATAAGGCCTAATGGCCGATG
25856370 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATTATGTGATAAGGCCTAATGGC
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATTATGTGATAAGGCCTAATGGC
* *
25856435 CGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCATTTGTGATGAATATGAA
66 CGATGTGATGAATGTGAAAGTGTATATATGTAATAAGGCCTAATGGCA-GTGTGATGAATATGAA
25856500 AGTGTATATATGTGATAAGGCCTAATGGCCGATG
130 AGTGTATATATGTGATAAGGCCTAATGGCCGATG
25856534 TG
1 TG
25856536 ATGAATGTGA
Statistics
Matches: 162, Mismatches: 2, Indels: 4
0.96 0.01 0.02
Matches are distributed among these distances:
162 1 0.01
163 66 0.41
164 95 0.59
ACGTcount: A:0.31, C:0.09, G:0.29, T:0.30
Consensus pattern (163 bp):
TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATTATGTGATAAGGCCTAATGGC
CGATGTGATGAATGTGAAAGTGTATATATGTAATAAGGCCTAATGGCAGTGTGATGAATATGAAA
GTGTATATATGTGATAAGGCCTAATGGCCGATG
Found at i:25856391 original size:117 final size:117
Alignment explanation
Indices: 25856253--25856481 Score: 415
Period size: 117 Copynumber: 2.0 Consensus size: 117
25856243 AGTGTATATA
25856253 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTAATAAGGCCTAATGG
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT-TATGTAATAAGGCCTAATGG
*
25856318 TCG-TGTGATGAATATGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATG
65 CCGATGTGATGAATATGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATG
*
25856370 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATTATGTGATAAGGCCTAATGGC
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATTATGTAATAAGGCCTAATGGC
*
25856435 CGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGC
66 CGATGTGATGAATATGAAAGTGTATATATGTGATAAGGCCTAATGGC
25856482 ATTTGTGATG
Statistics
Matches: 108, Mismatches: 3, Indels: 2
0.96 0.03 0.02
Matches are distributed among these distances:
116 21 0.19
117 87 0.81
ACGTcount: A:0.31, C:0.10, G:0.30, T:0.30
Consensus pattern (117 bp):
TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATTATGTAATAAGGCCTAATGGC
CGATGTGATGAATATGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATG
Found at i:25856489 original size:47 final size:47
Alignment explanation
Indices: 25856370--25856847 Score: 752
Period size: 47 Copynumber: 10.2 Consensus size: 47
25856360 ATGGCCGATG
25856370 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT-TA
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
25856416 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
*** *
25856463 TGTGATAAGGCCTAATGGCATTTGTGATGAATATGAAAGTGTATATA
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
25856510 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATA
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATA
25856559 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
*
25856606 TGTAATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATA
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATA
*
25856655 TGTGATAAGG-CTAATGGCTGATGTGATGAATGTGAAAGTGTATATA
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
25856701 TGTGATAAGGCCTAATGG-CGATGTGATGAATGTGAAAGTGTATATA
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
25856747 TGTGA-ATAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
1 TGTGATA-AGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
* * * * * * *
25856794 -GTGACAGGGCCGAGTGGCC-ACGTGATGGATGTGAAAGTGTATAAA
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
25856839 TGTGATAAG
1 TGTGATAAG
25856848 TCCGAAGGGC
Statistics
Matches: 402, Mismatches: 20, Indels: 20
0.91 0.05 0.05
Matches are distributed among these distances:
45 24 0.06
46 123 0.31
47 164 0.41
48 29 0.07
49 62 0.15
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.30
Consensus pattern (47 bp):
TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
Found at i:25856638 original size:353 final size:354
Alignment explanation
Indices: 25856015--25856725 Score: 1236
Period size: 353 Copynumber: 2.0 Consensus size: 354
25856005 AGTGTATATA
25856015 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATAGTGATAAGGCCTAATG
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATAGTGATAAGGCCTAATG
* *
25856080 GCCGATGTGATGAATATGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTG
66 GCCGATGTGATGAATATGAAAGTGTATATATGTGATAAGGCCTAATGGCAGATGTGATGAATATG
*
25856145 AAAGTGTATATATATGTGATCAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTG
131 AAAGTG-ATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTG
*
25856210 ATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGA
195 ATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTAATAAGGCCTAATGGCCGA
25856275 TGTGATGAATGTGAAAGTG-TATATATGTAATAAGGCCTAATGG-TCG-TGTGATGAATATGAAA
260 TGTGATGAATGTGAAAGTGATATATATGTAATAAGG-CTAATGGCT-GATGTGATGAATATGAAA
25856337 GTGTATATATGTGATAAGGCCTAATGGCCGATG
323 GTGTATATATGTGATAAGGCCTAATGG-CGATG
25856370 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT-TAT-GTGATAAGGCCTAATG
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATAGTGATAAGGCCTAATG
* **
25856433 GCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCATTTGTGATGAATATG
66 GCCGATGTGATGAATATGAAAGTGTATATATGTGATAAGGCCTAATGGCAGATGTGATGAATATG
25856498 AAAGTG-TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGT
131 AAAGTGATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGT
25856562 GATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTAATAAGGCCTAATGGCCG
194 GATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTAATAAGGCCTAATGGCCG
* *
25856627 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCTAATGGCTGATGTGATGAATGTGAAA
259 ATGTGATGAATGTGAAAGTG-ATATATATGTAATAAGGCTAATGGCTGATGTGATGAATATGAAA
25856692 GTGTATATATGTGATAAGGCCTAATGGCGATG
323 GTGTATATATGTGATAAGGCCTAATGGCGATG
25856724 TG
1 TG
25856726 ATGAATGTGA
Statistics
Matches: 341, Mismatches: 9, Indels: 13
0.94 0.02 0.04
Matches are distributed among these distances:
351 46 0.13
353 175 0.51
354 18 0.05
355 102 0.30
ACGTcount: A:0.32, C:0.08, G:0.29, T:0.30
Consensus pattern (354 bp):
TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATAGTGATAAGGCCTAATG
GCCGATGTGATGAATATGAAAGTGTATATATGTGATAAGGCCTAATGGCAGATGTGATGAATATG
AAAGTGATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTAATAAGGCCTAATGGCCGAT
GTGATGAATGTGAAAGTGATATATATGTAATAAGGCTAATGGCTGATGTGATGAATATGAAAGTG
TATATATGTGATAAGGCCTAATGGCGATG
Found at i:25857510 original size:20 final size:20
Alignment explanation
Indices: 25857476--25857523 Score: 55
Period size: 19 Copynumber: 2.5 Consensus size: 20
25857466 AATTTTTTTT
25857476 CATTCA-TTATCAAAAATTGG
1 CATTCATTTATC-AAAATTGG
**
25857496 CATTCATTTAT-AAAATTTT
1 CATTCATTTATCAAAATTGG
25857515 CATTCATTT
1 CATTCATTT
25857524 TCAGTTAAAG
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
19 15 0.60
20 6 0.24
21 4 0.16
ACGTcount: A:0.35, C:0.15, G:0.04, T:0.46
Consensus pattern (20 bp):
CATTCATTTATCAAAATTGG
Found at i:25863425 original size:47 final size:47
Alignment explanation
Indices: 25863366--25863757 Score: 689
Period size: 47 Copynumber: 8.3 Consensus size: 47
25863356 TAGTATGGCG
*
25863366 TAATGGCTGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
25863413 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCC
*
25863462 TAATGGCCGATGTGATGAATATGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
*
25863509 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATCAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCC
25863558 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
25863605 TAATGGCCGATGTGATG-ATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
25863651 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
* *
25863698 TAATGGTCGATGTGATGAATATG-AAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
25863744 TAATGGCCGATGTG
1 TAATGGCCGATGTG
25863758 TGATAAGGCC
Statistics
Matches: 332, Mismatches: 8, Indels: 11
0.95 0.02 0.03
Matches are distributed among these distances:
46 82 0.25
47 158 0.48
49 92 0.28
ACGTcount: A:0.32, C:0.08, G:0.29, T:0.31
Consensus pattern (47 bp):
TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
Found at i:25863677 original size:93 final size:95
Alignment explanation
Indices: 25863366--25863757 Score: 693
Period size: 96 Copynumber: 4.1 Consensus size: 95
25863356 TAGTATGGCG
*
25863366 TAATGGCTGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
25863431 ATGTGAAAGTGTATATATATGTGATAAGGCC
66 ATGTGAAAGTG-ATATATATGTGATAAGGCC
*
25863462 TAATGGCCGATGTGATGAATATGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
25863527 ATGTGAAAGTGTATATATATGTGATCAGGCC
66 ATGTGAAAGTG-ATATATATGTGATAAGGCC
25863558 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG-
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
25863622 ATGTGAAAGTG-TATATATGTGATAAGGCC
66 ATGTGAAAGTGATATATATGTGATAAGGCC
*
25863651 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGTCGATGTGATGA
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
25863716 ATATG-AAGTG-TATATATGTGATAAGGCC
66 ATGTGAAAGTGATATATATGTGATAAGGCC
25863744 TAATGGCCGATGTG
1 TAATGGCCGATGTG
25863758 TGATAAGGCC
Statistics
Matches: 288, Mismatches: 7, Indels: 5
0.96 0.02 0.02
Matches are distributed among these distances:
93 117 0.41
94 4 0.01
95 11 0.04
96 156 0.54
ACGTcount: A:0.32, C:0.08, G:0.29, T:0.31
Consensus pattern (95 bp):
TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
ATGTGAAAGTGATATATATGTGATAAGGCC
Found at i:25863697 original size:189 final size:187
Alignment explanation
Indices: 25863366--25864233 Score: 1054
Period size: 189 Copynumber: 4.5 Consensus size: 187
25863356 TAGTATGGCG
*
25863366 TAATGGCTGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG-
25863431 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATATGAAAGTGTATAT
65 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATATGAAAGTGTATAT
*
25863496 ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATCAGGCC
128 ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCC
25863558 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
25863623 TGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATG
66 TGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATATGAAAGTGTATATATG
* *
25863688 TGATAAGGCCTAATGGTCGATGTGATGAATATG-AAGTGTATATATGTGATAAGGCC
131 TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
* * * * ***
25863744 TAATGGCCGATGTGTGATAAGGCCTAATG-GCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAATGGCCGA--TGTGAT---G---AATGTG--AAAGTG-T--ATAT--ATGTG-ATA-A-GGCC
* ** **
25863808 TAA-GGCCTAATG-GCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCAT
48 TAATGGCC-GATGTGATGATGTG---------AAAGTGTATATATGTGATAAGGCCTAATGGCCG
*
25863871 TTGTGATGAATATGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGAT-AAGTGTGAAA
103 ATGTGATGAATATGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAA-TGTGAAA
25863935 GTGTAATATAATGTGATAAGGCC
167 GTGT-ATAT-ATGTGATAAGGCC
*
25863958 TAATGGCCGAT-TGATGAATGTGAAAGTGTATATATGTAATAAGGCCTAATGGCCG-TGTGATGA
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG-
* *
25864021 ATGTG-AAGTGTATATATATGTGATAAGGCCTAATGGCTGATGTGATGAATGTGAAAGTGTATAT
65 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATATGAAAGTGTATAT
25864085 ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
128 ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
* * * * * *
25864145 TAATGG-CGATGTGATGAATGTGAAAGTGTATATATGTGACAGGGCCGAGTGG-CAACGTGATGG
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGAT-G
*
25864208 ATGTGAAAGTGTATAAATGTGATAAG
65 ATGTGAAAGTGTATATATGTGATAAG
25864234 TCCCGAGGGC
Statistics
Matches: 589, Mismatches: 44, Indels: 92
0.81 0.06 0.13
Matches are distributed among these distances:
186 46 0.08
187 70 0.12
188 21 0.04
189 173 0.29
190 2 0.00
191 12 0.02
192 63 0.11
193 1 0.00
194 4 0.01
195 6 0.01
196 7 0.01
197 10 0.02
198 6 0.01
199 3 0.01
200 4 0.01
201 6 0.01
202 12 0.02
203 8 0.01
204 4 0.01
205 4 0.01
206 1 0.00
208 1 0.00
210 2 0.00
211 89 0.15
212 7 0.01
213 4 0.01
214 23 0.04
ACGTcount: A:0.32, C:0.08, G:0.29, T:0.30
Consensus pattern (187 bp):
TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
TGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATATGAAAGTGTATATATG
TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
Found at i:25863759 original size:24 final size:24
Alignment explanation
Indices: 25863732--25863781 Score: 100
Period size: 24 Copynumber: 2.1 Consensus size: 24
25863722 AGTGTATATA
25863732 TGTGATAAGGCCTAATGGCCGATG
1 TGTGATAAGGCCTAATGGCCGATG
25863756 TGTGATAAGGCCTAATGGCCGATG
1 TGTGATAAGGCCTAATGGCCGATG
25863780 TG
1 TG
25863782 ATGAATGTGA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.24, C:0.16, G:0.34, T:0.26
Consensus pattern (24 bp):
TGTGATAAGGCCTAATGGCCGATG
Found at i:25863762 original size:70 final size:71
Alignment explanation
Indices: 25863686--25863828 Score: 261
Period size: 71 Copynumber: 2.0 Consensus size: 71
25863676 AGTGTATATA
*
25863686 TGTGATAAGGCCTAATGGTCGATGTGATGAATATG-AAGTGTATATATGTGATAAGGCCTAATGG
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATATGAAAGTGTATATATGTGATAAGGCCTAATGG
25863750 CCGATG
66 CCGATG
*
25863756 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGG
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATATGAAAGTGTATATATGTGATAAGGCCTAATGG
25863821 CCGATG
66 CCGATG
25863827 TG
1 TG
25863829 ATGAATGTGA
Statistics
Matches: 70, Mismatches: 2, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
70 33 0.47
71 37 0.53
ACGTcount: A:0.29, C:0.10, G:0.31, T:0.29
Consensus pattern (71 bp):
TGTGATAAGGCCTAATGGCCGATGTGATGAATATGAAAGTGTATATATGTGATAAGGCCTAATGG
CCGATG
Found at i:25863769 original size:117 final size:118
Alignment explanation
Indices: 25863639--25863868 Score: 435
Period size: 117 Copynumber: 2.0 Consensus size: 118
25863629 AGTGTATATA
25863639 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGG
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGG
*
25863704 TCGATGTGATGAATATG-AAGTGTATATATGTGATAAGGCCTAATGGCCGATG
66 CCGATGTGATGAATATGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATG
25863756 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGG
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGG
*
25863821 CCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGC
66 CCGATGTGATGAATATGAAAGTGTATATATGTGATAAGGCCTAATGGC
25863869 ATTTGTGATG
Statistics
Matches: 110, Mismatches: 2, Indels: 1
0.97 0.02 0.01
Matches are distributed among these distances:
117 80 0.73
118 30 0.27
ACGTcount: A:0.31, C:0.10, G:0.30, T:0.30
Consensus pattern (118 bp):
TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGG
CCGATGTGATGAATATGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATG
Found at i:25863801 original size:164 final size:163
Alignment explanation
Indices: 25863593--25863922 Score: 610
Period size: 164 Copynumber: 2.0 Consensus size: 163
25863583 AGTGTATATA
25863593 TGTGATAAGGCCTAATGGCCGATGTGATGATGTGAAAGTGTATATATGTGATAAGGCCTAATGGC
1 TGTGATAAGGCCTAATGGCCGATGTGATGATGTGAAAGTGTATATATGTGATAAGGCCTAATGGC
25863658 CGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGTCGA-TGTGATGAATATG-
66 CGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGG-C-ATTGTGATGAATATGA
25863721 AAGTGTATATATGTGATAAGGCCTAATGGCCGATG
129 AAGTGTATATATGTGATAAGGCCTAATGGCCGATG
25863756 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGG
1 TGTGATAAGGCCTAATGGCCGATGTGATG-ATGTGAAAGTGTATATATGTGATAAGGCCTAATGG
25863821 CCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCATTTGTGATGAATATGA
65 CCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCA-TTGTGATGAATATGA
25863886 AAGTGTATATATGTGATAAGGCCTAATGGCCGATG
129 AAGTGTATATATGTGATAAGGCCTAATGGCCGATG
25863921 TG
1 TG
25863923 ATAAGTGTGA
Statistics
Matches: 163, Mismatches: 0, Indels: 6
0.96 0.00 0.04
Matches are distributed among these distances:
162 1 0.01
163 30 0.18
164 95 0.58
165 37 0.23
ACGTcount: A:0.31, C:0.09, G:0.30, T:0.30
Consensus pattern (163 bp):
TGTGATAAGGCCTAATGGCCGATGTGATGATGTGAAAGTGTATATATGTGATAAGGCCTAATGGC
CGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCATTGTGATGAATATGAAA
GTGTATATATGTGATAAGGCCTAATGGCCGATG
Found at i:25863809 original size:47 final size:47
Alignment explanation
Indices: 25863756--25864233 Score: 743
Period size: 47 Copynumber: 10.2 Consensus size: 47
25863746 ATGGCCGATG
25863756 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
25863803 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
*** *
25863850 TGTGATAAGGCCTAATGGCATTTGTGATGAATATGAAAGTGTATATA
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
25863897 TGTGATAAGGCCTAATGGCCGATGTGAT-AAGTGTGAAAGTGTAATATAA
1 TGTGATAAGGCCTAATGGCCGATGTGATGAA-TGTGAAAGTGT-ATAT-A
25863946 TGTGATAAGGCCTAATGGCCGAT-TGATGAATGTGAAAGTGTATATA
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
*
25863992 TGTAATAAGGCCTAATGGCCG-TGTGATGAATGTG-AAGTGTATATATA
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATA
*
25864039 TGTGATAAGGCCTAATGGCTGATGTGATGAATGTGAAAGTGTATATA
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
25864086 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
25864133 TGTGATAAGGCCTAATGG-CGATGTGATGAATGTGAAAGTGTATATA
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
* * * * * * * *
25864179 TGTGACAGGGCCGAGTGG-CAACGTGATGGATGTGAAAGTGTATAAA
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
25864225 TGTGATAAG
1 TGTGATAAG
25864234 TCCCGAGGGC
Statistics
Matches: 400, Mismatches: 22, Indels: 19
0.91 0.05 0.04
Matches are distributed among these distances:
45 6 0.01
46 107 0.27
47 224 0.56
48 32 0.08
49 31 0.08
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.30
Consensus pattern (47 bp):
TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
Found at i:25864111 original size:400 final size:401
Alignment explanation
Indices: 25863366--25864157 Score: 1391
Period size: 400 Copynumber: 2.0 Consensus size: 401
25863356 TAGTATGGCG
*
25863366 TAATGGCTGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
25863431 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATATGAAAGTGTATAT
66 ATGTGAAAGTG-ATATATATGTGATAAGGCCTAATGGCAGATGTGATGAATATGAAAGTGTATAT
*
25863496 ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATCAGGCCTAA
130 ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAA
*
25863561 TGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGATGT
195 TGGCCGATGTGATGAATGTGAAAGTGTATATATGTAATAAGGCCTAATGGCCGATGTGATGATGT
25863626 GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
260 GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
25863691 TAAGGCCTAATGGTCGATGTGATGAATATG-AAGTGTATATATGTGATAAGGCCTAATGGCCGAT
325 TAAGGCCTAATGGCCGATGTGATGAATATGAAAGTGTATATATGTGATAAGGCCTAATGG-CGAT
25863755 GTGTGATAAGGCC
389 GTGTGATAAGGCC
25863768 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
**
25863833 ATGTGAAAGTG-TATATATGTGATAAGGCCTAATGGCATTTGTGATGAATATGAAAGTGTATATA
66 ATGTGAAAGTGATATATATGTGATAAGGCCTAATGGCAGATGTGATGAATATGAAAGTGTATATA
25863897 TGTGATAAGGCCTAATGGCCGATGTGAT-AAGTGTGAAAGTGTA-ATATAATGTGATAAGGCCTA
131 TGTGATAAGGCCTAATGGCCGATGTGATGAA-TGTGAAAGTGTATATAT-ATGTGATAAGGCCTA
25863960 ATGGCCGAT-TGATGAATGTGAAAGTGTATATATGTAATAAGGCCTAATGGCCG-TGTGATGAAT
194 ATGGCCGATGTGATGAATGTGAAAGTGTATATATGTAATAAGGCCTAATGGCCGATGTGATG-AT
*
25864023 GTG-AAGTGTATATATATGTGATAAGGCCTAATGGCTGATGTGATGAATGTGAAAGTGTATATAT
258 GTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
*
25864087 GTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGC
321 GTGATAAGGCCTAATGGCCGATGTGATGAATATGAAAGTGTATATATGTGATAAGGCCTAATGGC
25864152 GATGTG
386 GATGTG
25864158 ATGAATGTGA
Statistics
Matches: 375, Mismatches: 9, Indels: 14
0.94 0.02 0.04
Matches are distributed among these distances:
398 12 0.03
399 54 0.14
400 205 0.55
401 29 0.08
402 75 0.20
ACGTcount: A:0.32, C:0.08, G:0.29, T:0.31
Consensus pattern (401 bp):
TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
ATGTGAAAGTGATATATATGTGATAAGGCCTAATGGCAGATGTGATGAATATGAAAGTGTATATA
TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAAT
GGCCGATGTGATGAATGTGAAAGTGTATATATGTAATAAGGCCTAATGGCCGATGTGATGATGTG
AAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGAT
AAGGCCTAATGGCCGATGTGATGAATATGAAAGTGTATATATGTGATAAGGCCTAATGGCGATGT
GTGATAAGGCC
Found at i:25864406 original size:37 final size:37
Alignment explanation
Indices: 25864350--25864429 Score: 97
Period size: 37 Copynumber: 2.2 Consensus size: 37
25864340 CCGAGCTCTA
* * * * *
25864350 AAGACCCGATGACTACGTGTGGGGATTTTGTCTAGGT
1 AAGACTCGATAACTACGTGTGGAGATTATGTCCAGGT
* *
25864387 AAGACTCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACTCGATAACTACGTGTGGAGATTATGTCCAGGT
25864424 AAGACT
1 AAGACT
25864430 TCGTAATAAG
Statistics
Matches: 36, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
37 36 1.00
ACGTcount: A:0.25, C:0.16, G:0.30, T:0.29
Consensus pattern (37 bp):
AAGACTCGATAACTACGTGTGGAGATTATGTCCAGGT
Found at i:25865901 original size:40 final size:40
Alignment explanation
Indices: 25865635--25865898 Score: 381
Period size: 40 Copynumber: 6.7 Consensus size: 40
25865625 GGAAATTGAG
*
25865635 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCATGCT
1 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
*
25865675 AGTGATGTATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
25865715 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
25865755 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
* * *
25865795 AGTGATGTATCCGGGCTAAGTTCCGA-AAGCA-TCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
* * * * *
25865833 AGTAATATATCCGTGTTAA-ACCTCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCC-CGAGGAGCATTCGTGCT
* * *
25865873 GGTGTTATATCCGGGCTAGGTCCCGA
1 AGTGATATATCCGGGCTAAGTCCCGA
25865899 AGATAATCAT
Statistics
Matches: 200, Mismatches: 20, Indels: 8
0.88 0.09 0.04
Matches are distributed among these distances:
37 1 0.00
38 25 0.12
39 8 0.04
40 164 0.82
41 2 0.01
ACGTcount: A:0.23, C:0.22, G:0.29, T:0.26
Consensus pattern (40 bp):
AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
Found at i:25869529 original size:47 final size:47
Alignment explanation
Indices: 25869255--25869962 Score: 1115
Period size: 47 Copynumber: 14.9 Consensus size: 47
25869245 TAGTATGGCG
25869255 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
*
25869302 TAAT-GCCGATATGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCC
*
25869350 TAATGGCCGATGTGATGAATATGAAAGTGTATATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCC
*
25869399 TAATGGCCGATGTGATGAATGTGAAAGTGTATGTA-GTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
25869445 -AATGGCCGATGTGATGAATGTG-AAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
25869490 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
25869537 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATG-TGATAAGGCC
* *
25869585 TAATGGCCGATATGATGAATGTGAAAGTGTGTATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
* *
25869632 TAATTGCCGATGTGATGAATATGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
25869679 TAATGGCCGATGTGATGAAATGTGAAAGTGTATATATATGTGATAAGGCC
1 TAATGGCCGATGTGATG-AATGTGAAAGTG--TATATATGTGATAAGGCC
* *
25869729 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTAATAAGGGC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
25869776 TAATGGCCGATGTGATGAATGTGAAAAGTGTATATATTATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTG-AAAGTG--TATA-TATGTGATAAGGCC
25869827 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
* *
25869874 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGACAGGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
* * * *
25869921 GAGTGGCC-ATCGTGATG-GTGTG-AAGTGTATAAATGTGATAAG
1 TAATGGCCGAT-GTGATGAATGTGAAAGTGTATATATGTGATAAG
25869963 TTCCCGAAGG
Statistics
Matches: 620, Mismatches: 26, Indels: 32
0.91 0.04 0.05
Matches are distributed among these distances:
44 10 0.02
45 50 0.08
46 62 0.10
47 248 0.40
48 88 0.14
49 82 0.13
50 45 0.07
51 35 0.06
ACGTcount: A:0.32, C:0.08, G:0.29, T:0.30
Consensus pattern (47 bp):
TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
Found at i:25869745 original size:97 final size:96
Alignment explanation
Indices: 25869255--25869962 Score: 1113
Period size: 95 Copynumber: 7.5 Consensus size: 96
25869245 TAGTATGGCG
*
25869255 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAAT-GCCGATATGATGA
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
25869319 ATGTGAAAGTGTATATATATGTGATAAGGCC
66 ATGTGAAAGTGTATATATATGTGATAAGGCC
*
25869350 TAATGGCCGATGTGATGAATATGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGAT
1 TAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGAT
*
25869415 GAATGTGAAAGTG--TATGTA-GTGATAAGGCC
64 GAATGTGAAAGTGTATATATATGTGATAAGGCC
25869445 -AATGGCCGATGTGATGAATGTG-AAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
25869508 ATGTGAAAGTG--TATATATGTGATAAGGCC
66 ATGTGAAAGTGTATATATATGTGATAAGGCC
*
25869537 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTTGATAAGGCCTAATGGCCGATATGATG
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATG-TGATAAGGCCTAATGGCCGATGTGATG
*
25869602 AATGTGAAAGTG--TGTATATGTGATAAGGCC
65 AATGTGAAAGTGTATATATATGTGATAAGGCC
* *
25869632 TAATTGCCGATGTGATGAATATGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG-
25869697 AATGTGAAAGTGTATATATATGTGATAAGGCC
65 AATGTGAAAGTGTATATATATGTGATAAGGCC
* *
25869729 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTAATAAGGGCTAATGGCCGATGTGATGA
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
25869794 ATGTGAAAAGTGTATATATTATGTGATAAGGCC
66 ATGTG-AAAGTGTATATA-TATGTGATAAGGCC
25869827 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* *
25869892 ATGTGAAAGTG--TATATATGTGACAGGGCC
66 ATGTGAAAGTGTATATATATGTGATAAGGCC
* * * *
25869921 GAGTGGCC-ATCGTGATG-GTGTG-AAGTGTATAAATGTGATAAG
1 TAATGGCCGAT-GTGATGAATGTGAAAGTGTATATATGTGATAAG
25869963 TTCCCGAAGG
Statistics
Matches: 577, Mismatches: 23, Indels: 29
0.92 0.04 0.05
Matches are distributed among these distances:
91 52 0.09
92 30 0.05
93 33 0.06
94 84 0.15
95 145 0.25
96 11 0.02
97 117 0.20
98 105 0.18
ACGTcount: A:0.32, C:0.08, G:0.29, T:0.30
Consensus pattern (96 bp):
TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
ATGTGAAAGTGTATATATATGTGATAAGGCC
Found at i:25870136 original size:39 final size:37
Alignment explanation
Indices: 25870079--25870159 Score: 101
Period size: 37 Copynumber: 2.2 Consensus size: 37
25870069 CCGAGCTCTA
* * *
25870079 AAGAC-CGATGACTACGTGTGGGGGATTTTTGTCCGGGT
1 AAGACTCGATAACTACGTGT-GGAGA-TTATGTCCGGGT
*
25870117 AAGACTCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACTCGATAACTACGTGTGGAGATTATGTCCGGGT
25870154 AAGACT
1 AAGACT
25870160 TCGTAATAAG
Statistics
Matches: 38, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
37 17 0.45
38 9 0.24
39 12 0.32
ACGTcount: A:0.23, C:0.16, G:0.32, T:0.28
Consensus pattern (37 bp):
AAGACTCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:25871800 original size:47 final size:46
Alignment explanation
Indices: 25871743--25871889 Score: 121
Period size: 47 Copynumber: 3.2 Consensus size: 46
25871733 ATAAAATTCA
* * *
25871743 TTTCAATTCATCACATCGGCCAT-T-AGGCCTTATCACATATTATACAC
1 TTTCACTTCATCACATCGGCCATATGA-CCCTTATCACATA-T-CACAC
*
25871790 TTTCACTTCATTCATATCGGCCATATGACCCTTATCACATATCACAC
1 TTTCACTTCA-TCACATCGGCCATATGACCCTTATCACATATCACAC
* *
25871837 TTTCACATTCAT--CATCGAGCCAT-TTAGCC-TAT-ACATAT-ACAC
1 TTTCAC-TTCATCACATCG-GCCATATGACCCTTATCACATATCACAC
25871879 TTTCACATTCA
1 TTTCAC-TTCA
25871890 CATCGCCATA
Statistics
Matches: 88, Mismatches: 7, Indels: 15
0.80 0.06 0.14
Matches are distributed among these distances:
42 15 0.17
43 6 0.07
44 3 0.03
45 8 0.09
46 5 0.06
47 20 0.23
48 17 0.19
49 13 0.15
50 1 0.01
ACGTcount: A:0.29, C:0.29, G:0.07, T:0.35
Consensus pattern (46 bp):
TTTCACTTCATCACATCGGCCATATGACCCTTATCACATATCACAC
Found at i:25877129 original size:46 final size:47
Alignment explanation
Indices: 25877002--25877153 Score: 210
Period size: 45 Copynumber: 3.3 Consensus size: 47
25876992 CTATCCGATG
25877002 GAATGTGAAA-TGTA-ATA-GT-AT-AGGCCTAATCGGCTCGATGTGAT
1 GAATGTGAAAGTGTATATATGTGATAAGGCCTAAT-GGC-CGATGTGAT
* *
25877046 GAATGTGAAAGTGTGTATATGTGATAAGGCCT-ATGGCCGATATGAT
1 GAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGAT
25877092 GAA-GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGAT
1 GAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGAT
25877138 GAATGATGAAAGTGTA
1 GAATG-TGAAAGTGTA
25877154 AATTTAAGTA
Statistics
Matches: 96, Mismatches: 4, Indels: 12
0.86 0.04 0.11
Matches are distributed among these distances:
44 10 0.10
45 30 0.31
46 30 0.31
47 6 0.06
48 14 0.15
49 6 0.06
ACGTcount: A:0.33, C:0.09, G:0.30, T:0.29
Consensus pattern (47 bp):
GAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGAT
Found at i:25878865 original size:37 final size:37
Alignment explanation
Indices: 25878788--25878859 Score: 99
Period size: 37 Copynumber: 1.9 Consensus size: 37
25878778 TATTCGAAGT
* * *
25878788 TCTTACCCGGACATAATCTCCACACGAAGTTATCGAG
1 TCTTACCCGGACAAAATCCCCACACGAAGTCATCGAG
*
25878825 TCTTACCCGGACAAAATCCCCCACACGTAGTCATC
1 TCTTACCCGGACAAAAT-CCCCACACGAAGTCATC
25878860 TGTCTTTTAG
Statistics
Matches: 30, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
37 16 0.53
38 14 0.47
ACGTcount: A:0.29, C:0.35, G:0.14, T:0.22
Consensus pattern (37 bp):
TCTTACCCGGACAAAATCCCCACACGAAGTCATCGAG
Found at i:25879174 original size:48 final size:49
Alignment explanation
Indices: 25879033--25879689 Score: 778
Period size: 46 Copynumber: 13.9 Consensus size: 49
25879023 ACTCGCCCTG
25879033 TCACATATA-ATACACTTTC-CATTTCATCAACA-CGGCCATTAGGCCTTA
1 TCACATATATATACACTTTCACA-TTCATC-ACATCGGCCATTAGGCCTTA
25879081 T-AC--ATATATACACTTTCACATTCATCACATCGGCCATTAGG-CTTA
1 TCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
*
25879126 TCA-ATAATATATACACTTTCACATT-ATCACATCGGCCATTAGCCCTTA
1 TCACAT-ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
25879174 T-ACAT-TATATACACTTTCACA-TCATCCACATCGGCCATTAGG-CTTA
1 TCACATATATATACACTTTCACATTCAT-CACATCGGCCATTAGGCCTTA
25879220 TCACATATATATAC-CTTTCA-ATTCATCACATCGGCCATTAGGCCTT-
1 TCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
* *
25879266 TCACATAT-TATACACTTTCATATTCAT-ACATC-GCAATTAGGCCTTA
1 TCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
* *
25879312 TCAC--ATATACACACTTTCACATTCATCATATC-GCCATTAGGCCTTA
1 TCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
25879358 TCACA-ATATATACCACTTTCACATTTCATCACATC-GCCATTAGGCCTTA
1 TCACATATATATA-CACTTTCACA-TTCATCACATCGGCCATTAGGCCTTA
*
25879407 TCACAT-CATATACACTTTCACATTCATCACATC-G-CATTAGGCCTTA
1 TCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
* *
25879453 TCAC-TA-CTATACAACGTTTCACAATT-ATCCACAGCCGGCCCATT-GGCC-TA
1 TCACATATATATAC-AC-TTTCAC-ATTCAT-CACA-TCGG-CCATTAGGCCTTA
* *
25879503 TCAC-TACAT-TACACTTTCACATTTCATCACATCCGGCCATGA-GCCTTA
1 TCACATATATATACACTTTCACA-TTCATCACAT-CGGCCATTAGGCCTTA
* *
25879551 TTCACATAAATATACACTTTCATATTCATCACATCGGCCATT-GGCCTTA
1 -TCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
* *
25879600 TCACATATATATACACTTTCACA-TCATCATATCGGGCATTGAGGCCTTA
1 TCACATATATATACACTTTCACATTCATCACATCGGCCATT-AGGCCTTA
25879649 TCACATATAT-TACACTTTCACATTCATCACATCGGCCATTA
1 TCACATATATATACACTTTCACATTCATCACATCGGCCATTA
25879690 CGCCATACTA
Statistics
Matches: 539, Mismatches: 24, Indels: 92
0.82 0.04 0.14
Matches are distributed among these distances:
44 2 0.00
45 52 0.10
46 130 0.24
47 109 0.20
48 112 0.21
49 88 0.16
50 26 0.05
51 16 0.03
52 4 0.01
ACGTcount: A:0.30, C:0.29, G:0.08, T:0.33
Consensus pattern (49 bp):
TCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
Found at i:25882882 original size:23 final size:26
Alignment explanation
Indices: 25882842--25882891 Score: 61
Period size: 24 Copynumber: 2.0 Consensus size: 26
25882832 AAGGAATTCG
25882842 CACACACACAGTGCCTCTAATT-ATT
1 CACACACACAGTGCCTCTAATTCATT
* *
25882867 CACATACA-AGTG-CTCTTATTCATT
1 CACACACACAGTGCCTCTAATTCATT
25882891 C
1 C
25882892 GTTAATACAC
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
23 7 0.32
24 8 0.36
25 7 0.32
ACGTcount: A:0.30, C:0.30, G:0.08, T:0.32
Consensus pattern (26 bp):
CACACACACAGTGCCTCTAATTCATT
Found at i:25883166 original size:40 final size:40
Alignment explanation
Indices: 25883070--25883334 Score: 374
Period size: 40 Copynumber: 6.7 Consensus size: 40
25883060 CATGATTACT
* * * *
25883070 TCGGGACCTAGCCCGGATATAACACCAGC-CGAATGCTCT
1 TCGGGACTTAGCCCGGATATATCACTAGCACGAATGCTCC
* * * * **
25883109 TCGAGG-TTTAACACGGATATATTACTAGCACGAATGCTTT
1 TCG-GGACTTAGCCCGGATATATCACTAGCACGAATGCTCC
* *
25883149 TCGGAACTTAGCCCGGATACATCACTAGCACGAATGCTCC
1 TCGGGACTTAGCCCGGATATATCACTAGCACGAATGCTCC
25883189 TCGGGACTTAGCCCGGATATATCAC-AGCACGAATGCTCC
1 TCGGGACTTAGCCCGGATATATCACTAGCACGAATGCTCC
25883228 TCGGGACTTAGCCCGGATATATCACTAGCACGAATGCTCC
1 TCGGGACTTAGCCCGGATATATCACTAGCACGAATGCTCC
*
25883268 TCGGGACTTAGCCCGGATATATCACTAGCATGAATGCTCC
1 TCGGGACTTAGCCCGGATATATCACTAGCACGAATGCTCC
25883308 TCGGGACTATAGCCCGGATATATCACT
1 TCGGGACT-TAGCCCGGATATATCACT
25883335 CTCAATTCCA
Statistics
Matches: 202, Mismatches: 19, Indels: 8
0.88 0.08 0.03
Matches are distributed among these distances:
39 59 0.29
40 125 0.62
41 18 0.09
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.23
Consensus pattern (40 bp):
TCGGGACTTAGCCCGGATATATCACTAGCACGAATGCTCC
Found at i:25883218 original size:79 final size:80
Alignment explanation
Indices: 25883070--25883334 Score: 374
Period size: 79 Copynumber: 3.3 Consensus size: 80
25883060 CATGATTACT
* * * * * * * *
25883070 TCGGGACCTAGCCCGGATATAACACCAGC-CGAATGCTCTTCGAGG-TTTAACACGGATATATTA
1 TCGGGACTTAGCCCGGATATATCACTAGCACGAATGCTCCTCG-GGACTTAGCCCGGATATATCA
**
25883133 CTAGCACGAATGCTTT
65 CTAGCACGAATGCTCC
* *
25883149 TCGGAACTTAGCCCGGATACATCACTAGCACGAATGCTCCTCGGGACTTAGCCCGGATATATCAC
1 TCGGGACTTAGCCCGGATATATCACTAGCACGAATGCTCCTCGGGACTTAGCCCGGATATATCAC
25883214 -AGCACGAATGCTCC
66 TAGCACGAATGCTCC
25883228 TCGGGACTTAGCCCGGATATATCACTAGCACGAATGCTCCTCGGGACTTAGCCCGGATATATCAC
1 TCGGGACTTAGCCCGGATATATCACTAGCACGAATGCTCCTCGGGACTTAGCCCGGATATATCAC
*
25883293 TAGCATGAATGCTCC
66 TAGCACGAATGCTCC
25883308 TCGGGACTATAGCCCGGATATATCACT
1 TCGGGACT-TAGCCCGGATATATCACT
25883335 CTCAATTCCA
Statistics
Matches: 167, Mismatches: 15, Indels: 6
0.89 0.08 0.03
Matches are distributed among these distances:
79 101 0.60
80 48 0.29
81 18 0.11
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.23
Consensus pattern (80 bp):
TCGGGACTTAGCCCGGATATATCACTAGCACGAATGCTCCTCGGGACTTAGCCCGGATATATCAC
TAGCACGAATGCTCC
Found at i:25883223 original size:119 final size:118
Alignment explanation
Indices: 25883070--25883333 Score: 377
Period size: 119 Copynumber: 2.2 Consensus size: 118
25883060 CATGATTACT
* * * * *
25883070 TCGGGACCTAGCCCGGATATAACACCAGCCGAATGCTCTTCGAGG-TTTAACACGGATATATTAC
1 TCGGGACTTAGCCCGGATATATCA-CAGCCGAATGCTCCTCG-GGACTTAACACGGATATATCAC
**
25883134 TAGCACGAATGCTTTTCGGAACTTAGCCCGGATACATCACTAGCACGAATGCTCC
64 TAGCACGAATGCTCCTCGGAACTTAGCCCGGATACATCACTAGCACGAATGCTCC
* *
25883189 TCGGGACTTAGCCCGGATATATCACAGCACGAATGCTCCTCGGGACTTAGCCCGGATATATCACT
1 TCGGGACTTAGCCCGGATATATCACAGC-CGAATGCTCCTCGGGACTTAACACGGATATATCACT
* * *
25883254 AGCACGAATGCTCCTCGGGACTTAGCCCGGATATATCACTAGCATGAATGCTCC
65 AGCACGAATGCTCCTCGGAACTTAGCCCGGATACATCACTAGCACGAATGCTCC
25883308 TCGGGACTATAGCCCGGATATATCAC
1 TCGGGACT-TAGCCCGGATATATCAC
25883334 TCTCAATTCC
Statistics
Matches: 130, Mismatches: 12, Indels: 5
0.88 0.08 0.03
Matches are distributed among these distances:
118 6 0.05
119 107 0.82
120 17 0.13
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.23
Consensus pattern (118 bp):
TCGGGACTTAGCCCGGATATATCACAGCCGAATGCTCCTCGGGACTTAACACGGATATATCACTA
GCACGAATGCTCCTCGGAACTTAGCCCGGATACATCACTAGCACGAATGCTCC
Found at i:25884599 original size:37 final size:37
Alignment explanation
Indices: 25884537--25884616 Score: 97
Period size: 37 Copynumber: 2.2 Consensus size: 37
25884527 CTTATTACGA
* * * *
25884537 AGTCTTACCCGGACATAATCTCCACACGAAGTTATCG
1 AGTCTTACCCAGACAAAATCCCCACACGAAGTCATCG
* *
25884574 AGTCTTACCTAGACAAAATCCCCACACGTAGTCATCG
1 AGTCTTACCCAGACAAAATCCCCACACGAAGTCATCG
*
25884611 GGTCTT
1 AGTCTT
25884617 TAGAGCTCGG
Statistics
Matches: 36, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
37 36 1.00
ACGTcount: A:0.29, C:0.30, G:0.16, T:0.25
Consensus pattern (37 bp):
AGTCTTACCCAGACAAAATCCCCACACGAAGTCATCG
Found at i:25884848 original size:46 final size:47
Alignment explanation
Indices: 25884735--25885601 Score: 969
Period size: 46 Copynumber: 17.9 Consensus size: 47
25884725 CCCTTCGGGA
* * * * * *
25884735 CTTATCACATTTATACACTTTCACATCCATCACGT-TGCCACT-CGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
25884780 C-TGTCACATATATACACTTTCACATTCATCACATC-GCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
25884825 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
25884872 C-TATCACATATATACACTTTCACATTCATCACATCAGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
25884918 CTTATCACATATATATACACTTTCACATTCATCACA-CGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
25884966 CTTATTACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
25885013 CTTATCACATTATATTACACTTTCACACTTCATCACATCGGCCATTAGGC
1 CTTATCACA-TATA-TACACTTTCACA-TTCATCACATCGGCCATTAGGC
* ***
25885063 CTTATCACATATATTACACTTTCATATTCATCACAAATGCCATTAGGC
1 CTTATCACATATA-TACACTTTCACATTCATCACATCGGCCATTAGGC
25885111 CTTATCACATATATACAC-TTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
25885157 CTTATCACATATA-ACACTTTCACATTCATCACATCGGCCATTA-GC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* ** **
25885202 CTTATCACACATCGGCCATTAGGC-CTTTATCACATAT-AT-ACA-C-TTCATTATTC
1 CTTATCACATAT-----A-TA--CAC-TT-TCACAT-TCATCACATCGGCCATTAGGC
** ** ** **
25885255 ATCACATCGACCAT-TAGGC-CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTA
1 --CTTATC-A-CATATATACACTT-TCAC--AT-T-CA---TCACA-TCGGC-CAT---TA----
25885318 GGC
45 GGC
25885321 CTTATCACATATATACACTTTCACA-TCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
25885367 CTTATCACATATATACACTTTCACATTCATCACATC-GCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
25885413 CTGATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
25885462 CTTATCACATATATACACTTTCATATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
25885509 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
25885558 CTTATCACATATATACACTTTCACATTCATCACATCAGCCATTA
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTA
25885602 CGCCATACTA
Statistics
Matches: 720, Mismatches: 46, Indels: 110
0.82 0.05 0.13
Matches are distributed among these distances:
44 34 0.05
45 21 0.03
46 211 0.29
47 140 0.19
48 84 0.12
49 121 0.17
50 32 0.04
51 2 0.00
52 6 0.01
53 6 0.01
54 10 0.01
55 20 0.03
56 3 0.00
57 3 0.00
58 3 0.00
59 4 0.01
61 1 0.00
62 3 0.00
63 8 0.01
64 7 0.01
66 1 0.00
ACGTcount: A:0.30, C:0.30, G:0.08, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:25884986 original size:141 final size:142
Alignment explanation
Indices: 25884735--25885601 Score: 1097
Period size: 141 Copynumber: 6.0 Consensus size: 142
25884725 CCCTTCGGGA
* * * * * * *
25884735 CTTATCACATTTATACACTTTCACATCCATCACGT-TGCCACT-CGCC-TGTCAC--ATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
25884795 ACTTTCACATTCATCACATCGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACAT
66 ACTTTCACATTCATCACATCGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACAT
25884860 CGGCCATTAGGC
131 CGGCCATTAGGC
*
25884872 C-TATCACATATATACACTTTCACATTCATCACATCAGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
*
25884936 ACTTTCACATTCATCACA-CGGCCATTAGGCCTTATTACATATATACACTTTCACATTCATCACA
66 ACTTTCACATTCATCACATC-GCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
25885000 TCGGCCATTAGGC
130 TCGGCCATTAGGC
25885013 CTTATCACATTATATTACACTTTCACACTTCATCACATCGGCCATTAGGCCTTATCACATATAT-
1 CTTATCACA-TATA-TACACTTTCACA-TTCATCACATCGGCCATTAGGCCTTATCACATATATA
*
25885077 TACACTTTCATATTCATCACAAAT-GCCATTAGGCCTTATCACATATATACAC-TTCACATTCAT
63 TACACTTTCACATTCATCAC--ATCGCCATTAGGCCTTATCACATATATACACTTTCACATTCAT
25885140 CACATCGGCCATTAGGC
126 CACATCGGCCATTAGGC
25885157 CTTATCACATATA-ACACTTTCACATTCATCACATCGGCCATTA-GCCTTATCACACATCGGCCA
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTAT--CACAT-----A
* * * * * *
25885220 TTAGGCCTTTATCACATATAT-ACACTTCATTATTCATC-ACA-TCGACCATTAGGC-CTTATCA
59 -TA----TATA-CAC-T-T-TCACA-TTCATCA--CATCGCCATTAGGCC-TTA-TCAC--AT--
25885281 CATATATACACTTTCACATTCATCACATCGGCCATTAGGC
106 ---ATATACACTTTCACATTCATCACATCGGCCATTAGGC
25885321 CTTATCACATATATACACTTTCACA-TCATCACATCGGCCATTAGGCCTTATCAC--ATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
*
25885383 ACTTTCACATTCATCACATCGCCATTAGGCCTGATCACATATATATACACTTTCACATTCATCAC
66 ACTTTCACATTCATCACATCGCCATTAGGCCTTATCAC--ATATATACACTTTCACATTCATCAC
25885448 ATCGGCCATTAGGC
129 ATCGGCCATTAGGC
*
25885462 CTTATCACATATATACACTTTCATATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
25885527 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
66 ACTTTCACATTCATCACATC-GCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
*
25885592 TCAGCCATTA
130 TCGGCCATTA
25885602 CGCCATACTA
Statistics
Matches: 648, Mismatches: 28, Indels: 102
0.83 0.04 0.13
Matches are distributed among these distances:
136 30 0.05
137 6 0.01
138 3 0.00
139 12 0.02
140 20 0.03
141 160 0.25
142 36 0.06
143 43 0.07
144 96 0.15
145 84 0.13
146 10 0.02
147 13 0.02
148 4 0.01
149 1 0.00
150 3 0.00
151 4 0.01
152 2 0.00
153 3 0.00
154 1 0.00
155 9 0.01
156 16 0.02
157 1 0.00
158 3 0.00
163 11 0.02
164 59 0.09
165 18 0.03
ACGTcount: A:0.30, C:0.30, G:0.08, T:0.32
Consensus pattern (142 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
ACTTTCACATTCATCACATCGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACAT
CGGCCATTAGGC
Found at i:25885214 original size:23 final size:25
Alignment explanation
Indices: 25885186--25885235 Score: 86
Period size: 23 Copynumber: 2.1 Consensus size: 25
25885176 TCACATTCAT
25885186 CACATCGGCCATTA-GCC-TTATCA
1 CACATCGGCCATTAGGCCTTTATCA
25885209 CACATCGGCCATTAGGCCTTTATCA
1 CACATCGGCCATTAGGCCTTTATCA
25885234 CA
1 CA
25885236 TATATACACT
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
23 14 0.56
24 3 0.12
25 8 0.32
ACGTcount: A:0.26, C:0.34, G:0.14, T:0.26
Consensus pattern (25 bp):
CACATCGGCCATTAGGCCTTTATCA
Found at i:25885269 original size:71 final size:70
Alignment explanation
Indices: 25885140--25885282 Score: 227
Period size: 71 Copynumber: 2.0 Consensus size: 70
25885130 TCACATTCAT
*
25885140 CACATCGGCCATTAGGCCTTATCACATATAACACTTTCACATTCATCACATCGGCCATTA-GCCT
1 CACATCGGCCATTAGGCCTTATCACATATAACACTTTCACATTCATCACATCGACCATTAGGCCT
25885204 TATCA
66 TATCA
*
25885209 CACATCGGCCATTAGGCCTTTATCACATATATACAC-TTCATTATTCATCACATCGACCATTAGG
1 CACATCGGCCATTAGGCC-TTATCACATATA-ACACTTTCA-CATTCATCACATCGACCATTAGG
25885273 CCTTATCA
63 CCTTATCA
25885281 CA
1 CA
25885283 TATATACACT
Statistics
Matches: 68, Mismatches: 2, Indels: 5
0.91 0.03 0.07
Matches are distributed among these distances:
69 18 0.26
70 16 0.24
71 23 0.34
72 11 0.16
ACGTcount: A:0.29, C:0.31, G:0.10, T:0.30
Consensus pattern (70 bp):
CACATCGGCCATTAGGCCTTATCACATATAACACTTTCACATTCATCACATCGACCATTAGGCCT
TATCA
Found at i:25885302 original size:47 final size:47
Alignment explanation
Indices: 25885209--25885601 Score: 666
Period size: 47 Copynumber: 8.3 Consensus size: 47
25885199 AGCCTTATCA
*
25885209 CACATCGGCCATTAGGCCTTTATCACATATATACAC-TTCATTATTCAT
1 CACATCGGCCATTAGGCC-TTATCACATATATACACTTTCA-CATTCAT
*
25885257 CACATCGACCATTAGGCCTTATCACATATATACACTTTCACATTCAT
1 CACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCAT
25885304 CACATCGGCCATTAGGCCTTATCACATATATACACTTTCACA-TCAT
1 CACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCAT
25885350 CACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCAT
1 CACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCAT
*
25885397 CACATC-GCCATTAGGCCTGATCACATATATATACACTTTCACATTCAT
1 CACATCGGCCATTAGGCCTTATCAC--ATATATACACTTTCACATTCAT
*
25885445 CACATCGGCCATTAGGCCTTATCACATATATACACTTTCATATTCAT
1 CACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCAT
25885492 CACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCAT
1 CACATCGGCCATTAGGCCTTATCAC--ATATATACACTTTCACATTCAT
25885541 CACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCAT
1 CACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCAT
*
25885588 CACATCAGCCATTA
1 CACATCGGCCATTA
25885602 CGCCATACTA
Statistics
Matches: 330, Mismatches: 8, Indels: 15
0.93 0.02 0.04
Matches are distributed among these distances:
46 63 0.19
47 155 0.47
48 49 0.15
49 63 0.19
ACGTcount: A:0.31, C:0.29, G:0.08, T:0.32
Consensus pattern (47 bp):
CACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCAT
Found at i:25885352 original size:164 final size:163
Alignment explanation
Indices: 25885046--25885566 Score: 563
Period size: 164 Copynumber: 3.0 Consensus size: 163
25885036 CACACTTCAT
25885046 CACATCGGCCATTAGGCCTTATCACATATATTACACTTTCATATTCATCACAAATGCCATTAGGC
1 CACATCGGCCATTAGGCCTTATCACATATATTACACTTTCATATTCATCAC-AATGCCATTAGGC
25885111 CTTATCACATATATACACTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATAACACTT
65 CTTATCACATATATACACTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATAACACTT
25885176 TCACATTCATCACATCGGCCATTA-GCCTTATCA
130 TCACATTCATCACATCGGCCATTAGGCCTTATCA
25885209 CACATCGGCCATTAGGCCTTTATCACATATA-TACAC-TTCATTATTCATCAC-ATCGACCATTA
1 CACATCGGCCATTAGGCC-TTATCACATATATTACACTTTCA-TATTCATCACAAT-G-CCATTA
25885271 GGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATA
62 GGCCTTATCACATATATACAC-TTCACATTCATCACATCGGCCATTAGGCCTTATCACATATA-A
25885336 CACTTTCACA-TCATCACATCGGCCATTAGGCCTTATCA
125 CACTTTCACATTCATCACATCGGCCATTAGGCCTTATCA
* *** * * *
25885374 CATATATACACTTTCA--CATTCATCACATCGCCATTAGGCCTGATCACATATAT-ATACACTTT
1 CACATCGGC-CATT-AGGCCTT-ATCACAT----A-TA----TTA-CAC-T-T-TCAT--A--TT
* *
25885436 CACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCATATTCATCACATCGGC
46 --CATC-A-CA-AT--GCCATTAGGCCTTATCACATATATACAC-TTCACATTCATCACATCGGC
25885501 CATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCA
103 CATTAGGCCTTATCAC--ATATA-ACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCA
25885565 CA
1 CA
25885567 TATATACACT
Statistics
Matches: 309, Mismatches: 10, Indels: 50
0.84 0.03 0.14
Matches are distributed among these distances:
161 2 0.01
162 5 0.02
163 60 0.19
164 73 0.24
165 33 0.11
166 3 0.01
167 1 0.00
169 1 0.00
170 2 0.01
175 1 0.00
176 3 0.01
178 1 0.00
179 2 0.01
180 2 0.01
182 2 0.01
184 3 0.01
185 1 0.00
186 1 0.00
188 65 0.21
189 1 0.00
190 17 0.06
191 30 0.10
ACGTcount: A:0.30, C:0.29, G:0.09, T:0.32
Consensus pattern (163 bp):
CACATCGGCCATTAGGCCTTATCACATATATTACACTTTCATATTCATCACAATGCCATTAGGCC
TTATCACATATATACACTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATAACACTTT
CACATTCATCACATCGGCCATTAGGCCTTATCA
Found at i:25885409 original size:210 final size:214
Alignment explanation
Indices: 25884996--25885601 Score: 706
Period size: 210 Copynumber: 2.7 Consensus size: 214
25884986 TCACATTCAT
*
25884996 CACATCGGCCATTAGGCCTTATCACATTATATTACACTTTCACACTTCATCACATCGGCCATTAG
1 CACATCGGCCATTAGGCCTTATCACATTATATTACACTTTCACACTTCATCACATCGACCATTAG
* *
25885061 GCCTTATCACATATATTACACTTTCATATTCATCACAAATGCCATTAGGCCTTATCACATATATA
66 GCCTTATCACATATATTACACTTTCACATTCATCACAAAGGCCATTAGGCCTTATCACATATATA
25885126 CACTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATAACACTTTCACATTCATCACAT
131 CACTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATAACACTTTCACATTCATCACAT
*
25885191 CGGCCATTA-GCCTTATCA
196 CGGCCATTAGGCCTGATCA
*
25885209 CACATCGGCCATTAGGCCTTTATCACA-TATA-TACAC-TTCATTA-TTCATCACATCGACCATT
1 CACATCGGCCATTAGGCC-TTATCACATTATATTACACTTTCA-CACTTCATCACATCGACCATT
**
25885270 AGGCCTTATCACATATA-TACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATA
64 AGGCCTTATCACATATATTACACTTTCACATTCATCACAAAGGCCATTAGGCCTTATCACATATA
25885334 TACACTTTCACA-TCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATC
129 TACAC-TTCACATTCATCACATCGGCCATTAGGCCTTATCACATATA-ACACTTTCACATTCATC
25885398 ACATC-GCCATTAGGCCTGATCA
192 ACATCGGCCATTAGGCCTGATCA
* **** *** * *
25885420 CATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCA
1 CACAT-CGGCCA-TTAGGCCTT-ATCACAT----TA-TA----TTA-CAC-T-T-T-CA----CA
* * **
25885485 TATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATCGGC
45 -CTTCATCACATCGACCATTAGGCCTTATCACATATAT-TACACTTTCACATTCATCACAAAGGC
*
25885550 CATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCAGCCATTA
108 CATTAGGCCTTATCACATATATACAC-TTCACATTCATCACATCGGCCATTA
25885602 CGCCATACTA
Statistics
Matches: 340, Mismatches: 20, Indels: 41
0.85 0.05 0.10
Matches are distributed among these distances:
210 89 0.26
211 78 0.23
212 10 0.03
213 31 0.09
214 8 0.02
218 1 0.00
219 2 0.01
224 2 0.01
225 3 0.01
228 1 0.00
229 1 0.00
230 2 0.01
233 2 0.01
235 34 0.10
237 59 0.17
238 17 0.05
ACGTcount: A:0.30, C:0.29, G:0.08, T:0.32
Consensus pattern (214 bp):
CACATCGGCCATTAGGCCTTATCACATTATATTACACTTTCACACTTCATCACATCGACCATTAG
GCCTTATCACATATATTACACTTTCACATTCATCACAAAGGCCATTAGGCCTTATCACATATATA
CACTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATAACACTTTCACATTCATCACAT
CGGCCATTAGGCCTGATCA
Found at i:25885516 original size:96 final size:94
Alignment explanation
Indices: 25885209--25885601 Score: 666
Period size: 96 Copynumber: 4.1 Consensus size: 94
25885199 AGCCTTATCA
* *
25885209 CACATCGGCCATTAGGCCTTTATCACATATATACAC-TTCATTATTCATCACATCGACCATTAGG
1 CACATCGGCCATTAGGCC-TTATCACATATATACACTTTCA-CATTCATCACATCGGCCATTAGG
25885273 CCTTATCACATATATACACTTTCACATTCAT
64 CCTTATCACATATATACACTTTCACATTCAT
25885304 CACATCGGCCATTAGGCCTTATCACATATATACACTTTCACA-TCATCACATCGGCCATTAGGCC
1 CACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCC
25885368 TTATCACATATATACACTTTCACATTCAT
66 TTATCACATATATACACTTTCACATTCAT
*
25885397 CACATC-GCCATTAGGCCTGATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGG
1 CACATCGGCCATTAGGCCTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGG
*
25885461 CCTTATCACATATATACACTTTCATATTCAT
64 CCTTATCACATATATACACTTTCACATTCAT
25885492 CACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGG
1 CACATCGGCCATTAGGCCTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGG
25885557 CCTTATCACATATATACACTTTCACATTCAT
64 CCTTATCACATATATACACTTTCACATTCAT
*
25885588 CACATCAGCCATTA
1 CACATCGGCCATTA
25885602 CGCCATACTA
Statistics
Matches: 286, Mismatches: 7, Indels: 9
0.95 0.02 0.03
Matches are distributed among these distances:
92 17 0.06
93 56 0.20
94 35 0.12
95 78 0.27
96 100 0.35
ACGTcount: A:0.31, C:0.29, G:0.08, T:0.32
Consensus pattern (94 bp):
CACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCC
TTATCACATATATACACTTTCACATTCAT
Found at i:25891430 original size:19 final size:19
Alignment explanation
Indices: 25891406--25891457 Score: 61
Period size: 19 Copynumber: 2.7 Consensus size: 19
25891396 CTTTAACTGA
25891406 AAATGAATGAAAATTTTAT-
1 AAATGAATGAAAATTTT-TG
**
25891425 AAATGAATGCCAATTTTTG
1 AAATGAATGAAAATTTTTG
25891444 ATAATGAATGAAAA
1 A-AATGAATGAAAA
25891458 AAAATTCTAT
Statistics
Matches: 27, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
18 1 0.04
19 16 0.59
20 10 0.37
ACGTcount: A:0.50, C:0.04, G:0.13, T:0.33
Consensus pattern (19 bp):
AAATGAATGAAAATTTTTG
Found at i:25895069 original size:40 final size:39
Alignment explanation
Indices: 25895032--25895123 Score: 132
Period size: 39 Copynumber: 2.3 Consensus size: 39
25895022 GCTACTCGTT
*
25895032 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGG-CATAGCCCGGAAT-TAGTAACTCGCA
* *
25895072 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGCATAGCCCGGAATTAGTAACTCGCA
25895111 CAAATGCCTTCGG
1 CAAATGCCTTCGG
25895124 ATCTTAGTCC
Statistics
Matches: 48, Mismatches: 3, Indels: 3
0.89 0.06 0.06
Matches are distributed among these distances:
39 33 0.69
40 15 0.31
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (39 bp):
CAAATGCCTTCGGGCATAGCCCGGAATTAGTAACTCGCA
Found at i:25895103 original size:39 final size:40
Alignment explanation
Indices: 25895013--25895176 Score: 176
Period size: 40 Copynumber: 4.1 Consensus size: 40
25895003 CGGAATTTAA
** *
25895013 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
*
25895053 CCGGTTATAGTAACTCGCACAAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
25895092 CCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
25895132 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
25895172 CCGGA
1 CCGGA
25895177 CATCATTCAA
Statistics
Matches: 105, Mismatches: 12, Indels: 14
0.80 0.09 0.11
Matches are distributed among these distances:
38 3 0.03
39 32 0.30
40 58 0.55
41 12 0.11
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:25897155 original size:40 final size:41
Alignment explanation
Indices: 25896979--25897205 Score: 325
Period size: 41 Copynumber: 5.6 Consensus size: 41
25896969 TACTCGAATG
*
25896979 ATATTCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGCGACT
1 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGCGACT
*
25897020 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGCAACT
1 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGCGACT
25897061 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGCGACT
1 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGCGACT
* * *
25897102 ACATCCGGACTAAGAT-CCGAAGGCATTTGTGCT-AGCGACT
1 ATATCCGGGCTAAG-TCCCGAAGGCTTTTGTGCTAAGCGACT
* * * *
25897142 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCT-AGTGACC
1 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGCGACT
* *
25897182 ATATCCGGGTTAAGACCCGAAGGC
1 ATATCCGGGCTAAGTCCCGAAGGC
25897206 CTTGTGCGAG
Statistics
Matches: 171, Mismatches: 13, Indels: 5
0.90 0.07 0.03
Matches are distributed among these distances:
39 1 0.01
40 62 0.36
41 107 0.63
42 1 0.01
ACGTcount: A:0.25, C:0.24, G:0.26, T:0.25
Consensus pattern (41 bp):
ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGCGACT
Found at i:25905237 original size:40 final size:41
Alignment explanation
Indices: 25905061--25905287 Score: 307
Period size: 41 Copynumber: 5.6 Consensus size: 41
25905051 TACTCGAATG
*
25905061 ATATCCGGGCTAAGTGCCGAAGGCTTTTGTGCTAAGCGACT
1 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGCGACT
25905102 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGCGACT
1 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGCGACT
*
25905143 ATATCTGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGCGACT
1 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGCGACT
* * *
25905184 ACATCCGGACTAAGAT-CCGAAGGCATTTGTGCT-AGCGACT
1 ATATCCGGGCTAAG-TCCCGAAGGCTTTTGTGCTAAGCGACT
* ** * * *
25905224 ATATCCGGGCTAAGTCTCGAAGGAATTTATGCT-AGTGACC
1 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGCGACT
* *
25905264 ATATCCGGGTTAAGACCCGAAGGC
1 ATATCCGGGCTAAGTCCCGAAGGC
25905288 CTTGTGCGAG
Statistics
Matches: 167, Mismatches: 17, Indels: 5
0.88 0.09 0.03
Matches are distributed among these distances:
39 1 0.01
40 58 0.35
41 107 0.64
42 1 0.01
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.26
Consensus pattern (41 bp):
ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGCGACT
Found at i:25907168 original size:40 final size:40
Alignment explanation
Indices: 25907113--25907190 Score: 156
Period size: 40 Copynumber: 1.9 Consensus size: 40
25907103 TTCATTCCCA
25907113 AGTTTGAAGGTACGTGGGAACGATACTTACCTCTGATTCG
1 AGTTTGAAGGTACGTGGGAACGATACTTACCTCTGATTCG
25907153 AGTTTGAAGGTACGTGGGAACGATACTTACCTCTGATT
1 AGTTTGAAGGTACGTGGGAACGATACTTACCTCTGATT
25907191 GAATTTGCAT
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 38 1.00
ACGTcount: A:0.26, C:0.17, G:0.27, T:0.31
Consensus pattern (40 bp):
AGTTTGAAGGTACGTGGGAACGATACTTACCTCTGATTCG
Found at i:25910343 original size:13 final size:13
Alignment explanation
Indices: 25910325--25910350 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
25910315 ATATTATAAT
25910325 TATTTTATGTTAA
1 TATTTTATGTTAA
25910338 TATTTTATGTTAA
1 TATTTTATGTTAA
25910351 AAATAAAAAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.00, G:0.08, T:0.62
Consensus pattern (13 bp):
TATTTTATGTTAA
Found at i:25911777 original size:40 final size:40
Alignment explanation
Indices: 25911729--25911917 Score: 308
Period size: 40 Copynumber: 4.7 Consensus size: 40
25911719 GGACTAAGAT
25911729 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
* *
25911769 TCGAAGGCATTTGTGCTAGTGACTATATCCAGGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
*
25911809 CCGAAGGCATTTGTGCTAGTGACTATATCCAGGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
* *
25911849 CCGAAGGCATCTGTGCTAGTTACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
*
25911889 CCGAAGGCATTTGTGCGAGTTG-CTATATC
1 CCGAAGGCATTTGTGCTAG-TGACTATATC
25911918 TGGCTAAATC
Statistics
Matches: 139, Mismatches: 9, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
40 138 0.99
41 1 0.01
ACGTcount: A:0.23, C:0.22, G:0.26, T:0.29
Consensus pattern (40 bp):
CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
Found at i:25916578 original size:40 final size:40
Alignment explanation
Indices: 25916471--25916673 Score: 261
Period size: 40 Copynumber: 5.1 Consensus size: 40
25916461 CGGATGATAA
* *
25916471 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTTACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTATA-T
* *
25916511 CCGAGCTAAG-CCCGAAGGCAATT-GTGCGAGTTATTATAT
1 CCGGGCTAAGTCCCGAAGGC-ATTCGTGCGAGTTACTATAT
25916550 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTATAT
* * * *
25916590 CCGGGCTAAGTACCAAAGGCATTTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTATAT
* *
25916630 CCGGGCTATGTCCCGAAGGCATTCGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTA-CTATAT
25916670 CCGG
1 CCGG
25916674 TTAAATTCCG
Statistics
Matches: 143, Mismatches: 15, Indels: 10
0.85 0.09 0.06
Matches are distributed among these distances:
39 35 0.24
40 108 0.76
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTATAT
Found at i:25932980 original size:17 final size:18
Alignment explanation
Indices: 25932954--25932987 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
25932944 TTTTTGTTTA
25932954 AATAAATTAATA-GCATT
1 AATAAATTAATATGCATT
*
25932971 AATAATTTAATATGCAT
1 AATAAATTAATATGCAT
25932988 ATATTTAATT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 11 0.73
18 4 0.27
ACGTcount: A:0.50, C:0.06, G:0.06, T:0.38
Consensus pattern (18 bp):
AATAAATTAATATGCATT
Found at i:25933187 original size:16 final size:16
Alignment explanation
Indices: 25933168--25933209 Score: 66
Period size: 16 Copynumber: 2.6 Consensus size: 16
25933158 GCAAACCCCT
25933168 AGCCTAGCAACCATTC
1 AGCCTAGCAACCATTC
25933184 AGCCTAGCAACCATTC
1 AGCCTAGCAACCATTC
* *
25933200 GGCCAAGCAA
1 AGCCTAGCAA
25933210 ACACCCAGCA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
16 24 1.00
ACGTcount: A:0.33, C:0.36, G:0.17, T:0.14
Consensus pattern (16 bp):
AGCCTAGCAACCATTC
Found at i:25942698 original size:40 final size:40
Alignment explanation
Indices: 25942633--25942748 Score: 135
Period size: 40 Copynumber: 2.9 Consensus size: 40
25942623 ATTATGTTTG
* *
25942633 GCACTTAGTGTGCGTATCGAGATAGCTTCGGCTATATAAA
1 GCACTTAGTGTGCGAATCGAGATAGCTTCAGCTATATAAA
* * **
25942673 GCACTTAGTGTGCGAATCG-GAATAGCTTTAGTTATATATG
1 GCACTTAGTGTGCGAATCGAG-ATAGCTTCAGCTATATAAA
* *
25942713 GCACTTAGTGTGTGAGATTGAGATAGCTTCAGCTAT
1 GCACTTAGTGTGCGA-ATCGAGATAGCTTCAGCTAT
25942749 GTTTTGGCAC
Statistics
Matches: 63, Mismatches: 10, Indels: 5
0.81 0.13 0.06
Matches are distributed among these distances:
39 1 0.02
40 46 0.73
41 15 0.24
42 1 0.02
ACGTcount: A:0.27, C:0.15, G:0.26, T:0.33
Consensus pattern (40 bp):
GCACTTAGTGTGCGAATCGAGATAGCTTCAGCTATATAAA
Found at i:25944128 original size:13 final size:13
Alignment explanation
Indices: 25944110--25944136 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
25944100 AAAGTAATTG
25944110 CACACGGGCGTGT
1 CACACGGGCGTGT
25944123 CACACGGGCGTGT
1 CACACGGGCGTGT
25944136 C
1 C
25944137 CCTGCCAAGC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.15, C:0.33, G:0.37, T:0.15
Consensus pattern (13 bp):
CACACGGGCGTGT
Found at i:25945242 original size:49 final size:49
Alignment explanation
Indices: 25945006--25945230 Score: 301
Period size: 49 Copynumber: 4.5 Consensus size: 49
25944996 TGAATACACG
* * * *
25945006 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCATACTGTTAAGTCGCC
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTT-AGTCACA
* * * * *
25945056 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACTCA-A-TGACCTCAATCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTAC-CAGATTG---TTAGTCACA
*
25945107 TGTGTAGTACTAAGTGCAGGCTACTACGTTTACCAGATTGTTAGTCACA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTAGTCACA
25945156 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTAGTCACA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTAGTCACA
25945205 TGTGTAGTACTAAGTGCAGGCTACTA
1 TGTGTAGTACTAAGTGCAGGCTACTA
25945231 TGCGTATCAG
Statistics
Matches: 156, Mismatches: 13, Indels: 13
0.86 0.07 0.07
Matches are distributed among these distances:
49 82 0.53
50 34 0.22
51 37 0.24
52 3 0.02
ACGTcount: A:0.26, C:0.20, G:0.24, T:0.30
Consensus pattern (49 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTAGTCACA
Found at i:25945242 original size:98 final size:99
Alignment explanation
Indices: 25945006--25945230 Score: 303
Period size: 101 Copynumber: 2.3 Consensus size: 99
25944996 TGAATACACG
* * * *
25945006 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCATACTGTTAAGTCGCCTGTGTAGTACTAAGT
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTAAGTCACATGTGTAGTACTAAGT
* *
25945071 GCAGGCTACTATGCGTACTCAATGACCTCAATCACG
66 GCAGGCTACTACGCGTACTCAATG--CTCAATCACA
*
25945107 TGTGTAGTACTAAGTGCAGGCTACTACGTTTACCAGATTGTT-AGTCACATGTGTAGTACTAAGT
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTAAGTCACATGTGTAGTACTAAGT
* * *
25945171 GCAGGCTACTACGTGTAC-CAGATTG-TTAGTCACA
66 GCAGGCTACTACGCGTACTCA-A-TGCTCAATCACA
25945205 TGTGTAGTACTAAGTGCAGGCTACTA
1 TGTGTAGTACTAAGTGCAGGCTACTA
25945231 TGCGTATCAG
Statistics
Matches: 112, Mismatches: 10, Indels: 7
0.87 0.08 0.05
Matches are distributed among these distances:
98 32 0.29
99 2 0.02
100 37 0.33
101 41 0.37
ACGTcount: A:0.26, C:0.20, G:0.24, T:0.30
Consensus pattern (99 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTAAGTCACATGTGTAGTACTAAGT
GCAGGCTACTACGCGTACTCAATGCTCAATCACA
Found at i:25948397 original size:68 final size:67
Alignment explanation
Indices: 25948325--25948474 Score: 171
Period size: 67 Copynumber: 2.2 Consensus size: 67
25948315 CATCATGTGT
* * * *
25948325 ACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGT-GATACTA-TG-CGTACACC
1 ACAAGAGAGCTAC--GACA-TAT-ATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACC
25948387 ATGTAG
62 ATGTAG
** * *
25948393 ACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGT
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
25948458 AG
66 AG
25948460 ACAAGAGAGCTACGA
1 ACAAGAGAGCTACGA
25948475 GATAAACTGG
Statistics
Matches: 70, Mismatches: 9, Indels: 7
0.81 0.10 0.08
Matches are distributed among these distances:
64 20 0.29
65 7 0.10
66 4 0.06
67 26 0.37
68 13 0.19
ACGTcount: A:0.33, C:0.18, G:0.29, T:0.21
Consensus pattern (67 bp):
ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
AG
Found at i:25948430 original size:64 final size:64
Alignment explanation
Indices: 25948349--25948533 Score: 178
Period size: 67 Copynumber: 2.9 Consensus size: 64
25948339 AGACATTATG
* * *
25948349 ATGTAGCTAGGTCGCATGGGTGATACTATGCGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGATACTATGAGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * *
25948413 ATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGT-GATACTA-TG-AGTACACCATGTAGACAAGAGAGCTACGAGAT
25948478 AA
63 AA
* * * * * *
25948480 ACTG--GCTAGGTCACATGGGAGGTACTAAGTGTTCACCATGT-GTACAAGAGAGCT
1 A-TGTAGCTAGGTCGCATGGGTGATACTATGAGTACACCATGTAG-ACAAGAGAGCT
25948534 GAACTATATG
Statistics
Matches: 98, Mismatches: 18, Indels: 11
0.77 0.14 0.09
Matches are distributed among these distances:
62 1 0.01
63 20 0.20
64 21 0.21
65 8 0.08
66 15 0.15
67 31 0.32
68 2 0.02
ACGTcount: A:0.30, C:0.18, G:0.30, T:0.22
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGATACTATGAGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:25955858 original size:27 final size:26
Alignment explanation
Indices: 25955828--25955879 Score: 61
Period size: 27 Copynumber: 2.0 Consensus size: 26
25955818 GGGAAAATCG
25955828 ATAAAGTGGTAATATGTG-AAAGTTATT
1 ATAAAGTGG--ATATGTGCAAAGTTATT
* *
25955855 ATAAGGTGGATATGTGCAAATTTAT
1 ATAAAGTGGATATGTGCAAAGTTAT
25955880 GTTTATGAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
25 7 0.32
26 7 0.32
27 8 0.36
ACGTcount: A:0.38, C:0.02, G:0.23, T:0.37
Consensus pattern (26 bp):
ATAAAGTGGATATGTGCAAAGTTATT
Found at i:25957837 original size:30 final size:30
Alignment explanation
Indices: 25957803--25957863 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
25957793 TTCCCGAGCC
25957803 TAGGGGAAAAAGTGTAAATATGCAAAAGTT
1 TAGGGGAAAAAGTGTAAATATGCAAAAGTT
* * * * *
25957833 TAGGGGCAAAATTGTAATTTTGCCAAAGTT
1 TAGGGGAAAAAGTGTAAATATGCAAAAGTT
25957863 T
1 T
25957864 GAGTTAAGGA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.39, C:0.07, G:0.25, T:0.30
Consensus pattern (30 bp):
TAGGGGAAAAAGTGTAAATATGCAAAAGTT
Found at i:25974510 original size:29 final size:31
Alignment explanation
Indices: 25974461--25974519 Score: 70
Period size: 29 Copynumber: 2.0 Consensus size: 31
25974451 AATGTGTATC
* *
25974461 TATTTATTTGATGGATGAAAT-T-GAGATAG
1 TATTTATTTAATAGATGAAATATGGAGATAG
25974490 TATTTATTATAATAGAT-AAATATGGAGATA
1 TATTTATT-TAATAGATGAAATATGGAGATA
25974520 TTAAATTTAA
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
29 12 0.48
30 7 0.28
31 6 0.24
ACGTcount: A:0.41, C:0.00, G:0.19, T:0.41
Consensus pattern (31 bp):
TATTTATTTAATAGATGAAATATGGAGATAG
Found at i:25990585 original size:30 final size:30
Alignment explanation
Indices: 25990551--25990608 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 30
25990541 TTTTCGGGCA
* *
25990551 TAGGGGTAAAACGGTCATTTTGCCAAAGTC
1 TAGGGGCAAAACGGTCATTTTACCAAAGTC
*
25990581 TAGGGGCAAAATGGTCATTTTACCAAAG
1 TAGGGGCAAAACGGTCATTTTACCAAAG
25990609 ATGTAAATTT
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.33, C:0.16, G:0.26, T:0.26
Consensus pattern (30 bp):
TAGGGGCAAAACGGTCATTTTACCAAAGTC
Found at i:25991020 original size:47 final size:45
Alignment explanation
Indices: 25990948--25991260 Score: 204
Period size: 47 Copynumber: 6.7 Consensus size: 45
25990938 TGATTTGTGC
* * *
25990948 GCCAGTGTAAGACATGTCTAGGACATGCTTCTGTCACATTATGAGA
1 GCCAGTGTAAGACATGTCTGGGACATGCATC-GTCACAATATGAGA
* * * *
25990994 GCCAGTGTAAGACCATGTCTGGGACATGCATCATCTATACTATGATA
1 GCCAGTGTAAGA-CATGTCTGGGACATGCATCGTC-ACAATATGAGA
* *
25991041 GCCAGTGTAAGACCATGTCTGGGACATGGCATCAG-CACAGAGATGAGT
1 GCCAGTGTAAGA-CATGTCTGGGACAT-GCATC-GTCACA-ATATGAGA
* ***
25991089 GCCAGTGTAAGACATGTCTGGGACATGCATCAGCCTTGATA-GAGATA
1 GCCAGTGTAAGACATGTCTGGGACATGCATC-GTCACAATATGAG--A
** * * * *
25991136 GCCAGTGTAAGATGTGTCTGGGACACGCATCG--ACTAAGA-GTTGT
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGTCAC-AATATG-AGA
* *** * *
25991180 GCTAGTGTAAGACATGTCTTACACATGCATCAGCGCACGTATATGAGA
1 GCCAGTGTAAGACATGTCTGGGACATGCATC-G-TCAC-AATATGAGA
*
25991228 GCCAGTGGAAGACCATGTCTGGGACATGACATC
1 GCCAGTGTAAGA-CATGTCTGGGACATG-CATC
25991261 AGCAATATAT
Statistics
Matches: 207, Mismatches: 43, Indels: 30
0.74 0.15 0.11
Matches are distributed among these distances:
44 24 0.12
45 7 0.03
46 25 0.12
47 97 0.47
48 37 0.18
49 13 0.06
50 4 0.02
ACGTcount: A:0.29, C:0.20, G:0.27, T:0.24
Consensus pattern (45 bp):
GCCAGTGTAAGACATGTCTGGGACATGCATCGTCACAATATGAGA
Found at i:25991108 original size:94 final size:91
Alignment explanation
Indices: 25990948--25991264 Score: 279
Period size: 94 Copynumber: 3.4 Consensus size: 91
25990938 TGATTTGTGC
* * * ** *
25990948 GCCAGTGTAAGACATGTCTAGGACAT-GCTTCTGTCACATTATGAGAGCCAGTGTAAGACCATGT
1 GCCAGTGTAAGACATGTCTGGGACATGGCATCAG-CACAAGATGAGTGCCAGTGTAAGA-CATGT
*
25991012 CTGGGACATGCATCATCTATACTATGATA
64 CTGGGACATGCATCACCTATA-TATGATA
25991041 GCCAGTGTAAGACCATGTCTGGGACATGGCATCAGCACAGAGATGAGTGCCAGTGTAAGACATGT
1 GCCAGTGTAAGA-CATGTCTGGGACATGGCATCAGCACA-AGATGAGTGCCAGTGTAAGACATGT
*
25991106 CTGGGACATGCATCAGCCT-TGATAGAGATA
64 CTGGGACATGCATCA-CCTAT-ATA-TGATA
** * * *
25991136 GCCAGTGTAAGATGTGTCTGGGACA-CGCATC-G-ACTAAGA-GTTGTGCTAGTGTAAGACATGT
1 GCCAGTGTAAGACATGTCTGGGACATGGCATCAGCAC-AAGATG-AGTGCCAGTGTAAGACATGT
*** *
25991197 CTTACACATGCATCAGCGC-ACGTATATGAGA
64 CTGGGACATGCATCA-C-CTA--TATATGATA
* *
25991228 GCCAGTGGAAGACCATGTCTGGGACATGACATCAGCA
1 GCCAGTGTAAGA-CATGTCTGGGACATGGCATCAGCA
25991265 ATATATCCCA
Statistics
Matches: 185, Mismatches: 23, Indels: 29
0.78 0.10 0.12
Matches are distributed among these distances:
90 1 0.01
91 37 0.20
92 17 0.09
93 31 0.17
94 56 0.30
95 42 0.23
96 1 0.01
ACGTcount: A:0.29, C:0.21, G:0.27, T:0.24
Consensus pattern (91 bp):
GCCAGTGTAAGACATGTCTGGGACATGGCATCAGCACAAGATGAGTGCCAGTGTAAGACATGTCT
GGGACATGCATCACCTATATATGATA
Found at i:25994122 original size:47 final size:47
Alignment explanation
Indices: 25993965--25994324 Score: 238
Period size: 47 Copynumber: 7.7 Consensus size: 47
25993955 TTATATTGTC
* * ** *
25993965 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATATACGCGTGCT
1 GATG-CATGTCCCAGACA-GGTCTTACACTGGCTATCATCTGTGAG-GCT
* * * * * *
25994015 GATGCATGTCCCAGACATGTCTTACACTAGC-A-CAACTCTTA-GCC
1 GATGCATGTCCCAGACAGGTCTTACACTGGCTATCATCTGTGAGGCT
* * *
25994059 GATGCGTGTCCTAGACACGTCTTACACTGGCTATC-TCTGTCGAGGCT
1 GATGCATGTCCCAGACAGGTCTTACACTGGCTATCATCTGT-GAGGCT
* * * * *
25994106 GATGCATGTCCCAGACATGTCTTACACTGGC-ACTCATCTTTGTGCCA
1 GATGCATGTCCCAGACAGGTCTTACACTGGCTA-TCATCTGTGAGGCT
*
25994153 G-TGCCATGTCCCAGACATGGTCTTACACTGGCTATCAT-AGT-ATGGCT
1 GATG-CATGTCCCAGACA-GGTCTTACACTGGCTATCATCTGTGA-GGCT
* * * ** * * *
25994200 GATGCATGTCCTAGACATGTCTTACACTAGCCCTCGTCTG-GATGCC
1 GATGCATGTCCCAGACAGGTCTTACACTGGCTATCATCTGTGAGGCT
* * *
25994246 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATGT--GGCC
1 GATG-CATGTCCCAGACA-GGTCTTACACTGGCTATCAT-CTGTGAGGCT
* * *
25994294 GAAGCATGTCCCAGACATGACTTACACTGGC
1 GATGCATGTCCCAGACAGGTCTTACACTGGC
25994325 GCACAAATCA
Statistics
Matches: 243, Mismatches: 50, Indels: 38
0.73 0.15 0.11
Matches are distributed among these distances:
44 29 0.12
45 4 0.02
46 41 0.17
47 92 0.38
48 57 0.23
49 16 0.07
50 4 0.02
ACGTcount: A:0.22, C:0.29, G:0.22, T:0.28
Consensus pattern (47 bp):
GATGCATGTCCCAGACAGGTCTTACACTGGCTATCATCTGTGAGGCT
Found at i:25994217 original size:94 final size:94
Alignment explanation
Indices: 25993964--25994321 Score: 394
Period size: 94 Copynumber: 3.8 Consensus size: 94
25993954 GTTATATTGT
* *
25993964 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATA-TACGCGTGCTGATGCATGTCCCA
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTATCATAGTA--TG-GCTGATGCATGTCCCA
* *
25994028 GACATGTCTTACACTAGCA--CAACTCTT-AGC
63 GACATGTCTTACACTAGCACTCATCT-TTGTGC
* * * *
25994058 CGATG-CGTGTCCTAGACA-CGTCTTACACTGGCTATC-TCTGTCGA-GGCTGATGCATGTCCCA
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTATCAT-AGT--ATGGCTGATGCATGTCCCA
*
25994119 GACATGTCTTACACTGGCACTCATCTTTGTGC
63 GACATGTCTTACACTAGCACTCATCTTTGTGC
*
25994151 C-AGTGCCATGTCCCAGACATGGTCTTACACTGGCTATCATAGTATGGCTGATGCATGTCCTAGA
1 CGA-TGCCATGTCCCAGACATGGTCTTACACTGGCTATCATAGTATGGCTGATGCATGTCCCAGA
* * *
25994215 CATGTCTTACACTAGCCCTCGTC-TGGATGC
65 CATGTCTTACACTAGCACTCATCTTTG-TGC
* * * * *
25994245 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATGTGGCCGAAGCATGTCCCAGAC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTATCATAGTATGGCTGATGCATGTCCCAGAC
*
25994310 ATGACTTACACT
66 ATGTCTTACACT
25994322 GGCGCACAAA
Statistics
Matches: 226, Mismatches: 24, Indels: 28
0.81 0.09 0.10
Matches are distributed among these distances:
91 35 0.15
92 20 0.09
93 24 0.11
94 125 0.55
95 21 0.09
96 1 0.00
ACGTcount: A:0.22, C:0.29, G:0.21, T:0.28
Consensus pattern (94 bp):
CGATGCCATGTCCCAGACATGGTCTTACACTGGCTATCATAGTATGGCTGATGCATGTCCCAGAC
ATGTCTTACACTAGCACTCATCTTTGTGC
Found at i:25994705 original size:30 final size:30
Alignment explanation
Indices: 25994665--25994721 Score: 96
Period size: 30 Copynumber: 1.9 Consensus size: 30
25994655 AATTTACATC
* *
25994665 TTTGGTAAAATGACCATTTTGCCCCTAGAT
1 TTTGGCAAAATGACCATTTTACCCCTAGAT
25994695 TTTGGCAAAATGACCATTTTACCCCTA
1 TTTGGCAAAATGACCATTTTACCCCTA
25994722 TGCTTGAAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.28, C:0.23, G:0.14, T:0.35
Consensus pattern (30 bp):
TTTGGCAAAATGACCATTTTACCCCTAGAT
Found at i:26003081 original size:350 final size:353
Alignment explanation
Indices: 26002434--26003140 Score: 1339
Period size: 350 Copynumber: 2.0 Consensus size: 353
26002424 ATTGTTCTTC
*
26002434 TGTGCAGTCTTTCCTTGTCCCATTTGGGTGTGGCACACGAGGTTTGTATTCTTTACTTAATGATT
1 TGTGCAGTCTTTCCTTGTCCCATTTGGGTGTGGCACACGAGGTTTGTATTCTTTACTTAACGATT
*
26002499 TCTGGTCATTGTGGTCCACCTCACCCTCACCCTTACCTTTACTTACTACTGTTTCTTGCCTCGAT
66 TCTGGTCATTGTGGT---CCTCACCCTCACCCTTACCTTTACTTACTACAGTTTCTTGCCTCGAT
26002564 TCTGGTTCAGGTGTAACTAACCTTTCCTCATCTTGAATGGTAATTGCATTGATTTTCTCCCTTGG
128 TCTGGTTCAGGTGTAACTAACCTTTCCTCATCTTGAATGGTAATTGCATTGATTTTCTCCCTTGG
26002629 GTTAGATTCAGTGTTACTCGAGAGGCTACCTTGTGGTCGTTCAGATATCAATTTACCGAGTTGAC
193 GTTAGATTCAGTGTTACTCGAGAGGCTACCTTGTGGTCGTTCAGATATCAATTTACCGAGTTGAC
26002694 CTATCTGAGTTTCGAGCCCTTAGATCGATGCTTGTTGATTTTTAAGTGCTGTCTTGGTATTTTGA
258 CTATCTGAGTTTCGAGCCCTTAGATCGATGCTTGTTGATTTTTAAGTGCTGTCTTGGTATTTTGA
*
26002759 AAATGAGTTTCTGACATTGAGATGAATTTTG
323 AAATGAGTTTCTGACACTGAGATGAATTTTG
26002790 TGTGCAGTCTTTCCTTGTCCCATTTGGGTGTGGCACACGAGGTTTGTATTCTTTACTTAACGATT
1 TGTGCAGTCTTTCCTTGTCCCATTTGGGTGTGGCACACGAGGTTTGTATTCTTTACTTAACGATT
26002855 TCTGGTCATTGTGGT-C-CA-CCTCACCCTTACCTTTACTTACTACAGTTTCTTGCCTCGATTCT
66 TCTGGTCATTGTGGTCCTCACCCTCACCCTTACCTTTACTTACTACAGTTTCTTGCCTCGATTCT
26002917 GGTTCAGGTGTAACTAACCTTTCCTCATCTTGAATGGTAATTGCATTGATTTTCTCCCTTGGGTT
131 GGTTCAGGTGTAACTAACCTTTCCTCATCTTGAATGGTAATTGCATTGATTTTCTCCCTTGGGTT
26002982 AGATTCAGTGTTACTCGAGAGGCTACCTTGTGGTCGTTCAGATATCAATTTACCGAGTTGACCTA
196 AGATTCAGTGTTACTCGAGAGGCTACCTTGTGGTCGTTCAGATATCAATTTACCGAGTTGACCTA
26003047 TCTGAGTTTCGAGCCCTTAGATCGATGCTTGTTGATTTTTAAGTGCTGTCTTGGTATTTTGAAAA
261 TCTGAGTTTCGAGCCCTTAGATCGATGCTTGTTGATTTTTAAGTGCTGTCTTGGTATTTTGAAAA
26003112 TGAGTTTCTGACACTGAGATGAATTTTG
326 TGAGTTTCTGACACTGAGATGAATTTTG
26003140 T
1 T
26003141 TAGCATCTTC
Statistics
Matches: 348, Mismatches: 3, Indels: 6
0.97 0.01 0.02
Matches are distributed among these distances:
350 266 0.76
351 2 0.01
352 1 0.00
356 79 0.23
ACGTcount: A:0.19, C:0.20, G:0.21, T:0.40
Consensus pattern (353 bp):
TGTGCAGTCTTTCCTTGTCCCATTTGGGTGTGGCACACGAGGTTTGTATTCTTTACTTAACGATT
TCTGGTCATTGTGGTCCTCACCCTCACCCTTACCTTTACTTACTACAGTTTCTTGCCTCGATTCT
GGTTCAGGTGTAACTAACCTTTCCTCATCTTGAATGGTAATTGCATTGATTTTCTCCCTTGGGTT
AGATTCAGTGTTACTCGAGAGGCTACCTTGTGGTCGTTCAGATATCAATTTACCGAGTTGACCTA
TCTGAGTTTCGAGCCCTTAGATCGATGCTTGTTGATTTTTAAGTGCTGTCTTGGTATTTTGAAAA
TGAGTTTCTGACACTGAGATGAATTTTG
Found at i:26004378 original size:19 final size:19
Alignment explanation
Indices: 26004341--26004378 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
26004331 ACCTGTCAGA
*
26004341 AGAAAATAAATGAAGAATT
1 AGAAAATAAATGAAAAATT
26004360 AGAAAATAAAAT-AAAAATT
1 AGAAAAT-AAATGAAAAATT
26004379 CAAATTGCAA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 13 0.76
20 4 0.24
ACGTcount: A:0.68, C:0.00, G:0.11, T:0.21
Consensus pattern (19 bp):
AGAAAATAAATGAAAAATT
Found at i:26008836 original size:15 final size:15
Alignment explanation
Indices: 26008816--26008884 Score: 84
Period size: 15 Copynumber: 4.6 Consensus size: 15
26008806 GTATCTTGGG
26008816 TTTCTTTATCCTGGA
1 TTTCTTTATCCTGGA
* *
26008831 TCTCTTTATTCTGGA
1 TTTCTTTATCCTGGA
* *
26008846 TTTCTTTATTCTGGG
1 TTTCTTTATCCTGGA
* *
26008861 TTTCTCTATCTTGGA
1 TTTCTTTATCCTGGA
26008876 TTTCTTTAT
1 TTTCTTTAT
26008885 TCGGTTTTCT
Statistics
Matches: 45, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
15 45 1.00
ACGTcount: A:0.12, C:0.17, G:0.13, T:0.58
Consensus pattern (15 bp):
TTTCTTTATCCTGGA
Found at i:26008885 original size:30 final size:30
Alignment explanation
Indices: 26008807--26008894 Score: 99
Period size: 30 Copynumber: 3.0 Consensus size: 30
26008797 CATAGTATCG
* * * *
26008807 TATCTTGGGTTTCTTTATCCTGGATCTCTT
1 TATCTTGGATTTCTTTATTCTGGATTTCTC
*
26008837 TAT-TCTGGATTTCTTTATTCTGGGTTTCTC
1 TATCT-TGGATTTCTTTATTCTGGATTTCTC
*
26008867 TATCTTGGATTTCTTTATTC-GGTTTTCT
1 TATCTTGGATTTCTTTATTCTGGATTTCT
26008895 TGTTATCTTT
Statistics
Matches: 50, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
29 8 0.16
30 41 0.82
31 1 0.02
ACGTcount: A:0.10, C:0.17, G:0.16, T:0.57
Consensus pattern (30 bp):
TATCTTGGATTTCTTTATTCTGGATTTCTC
Done.