Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A06
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 115140250
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2234201 characters in sequence are not A, C, G, or T
File 80 of 345
Found at i:26018001 original size:29 final size:29
Alignment explanation
Indices: 26017967--26018062 Score: 115
Period size: 29 Copynumber: 3.3 Consensus size: 29
26017957 CCGACGAATG
*
26017967 AAAAGGGATAGCTTTGGCTATCGAAT-TCA
1 AAAAGGGATAGCTTCGGCTATCGAATAT-A
* * *
26017996 AAAAGGAATAGCTTCAGCTATCGAATATG
1 AAAAGGGATAGCTTCGGCTATCGAATATA
*
26018025 AAAAGGGATAGCTTCGGCTATC-AATGATG
1 AAAAGGGATAGCTTCGGCTATCGAAT-ATA
26018054 AAAAGGGAT
1 AAAAGGGAT
26018063 GGTGATGACC
Statistics
Matches: 59, Mismatches: 6, Indels: 4
0.86 0.09 0.06
Matches are distributed among these distances:
28 3 0.05
29 55 0.93
30 1 0.02
ACGTcount: A:0.39, C:0.12, G:0.25, T:0.24
Consensus pattern (29 bp):
AAAAGGGATAGCTTCGGCTATCGAATATA
Found at i:26019861 original size:43 final size:43
Alignment explanation
Indices: 26019813--26019909 Score: 106
Period size: 43 Copynumber: 2.3 Consensus size: 43
26019803 TTGTGATTCG
*
26019813 TGTAAGACCATGCCTAGGACATTGGCATCGA-AGTGAGAAAACA
1 TGTAAGACCATGCCTAGGACAGTGGCATCGATA-TGAGAAAACA
* * * * * * *
26019856 TGTAAGACCCTGTCTGGGACAGTGGCATTGATATGTGATAGCA
1 TGTAAGACCATGCCTAGGACAGTGGCATCGATATGAGAAAACA
26019899 TGTAAGACCAT
1 TGTAAGACCAT
26019910 ATCCGGGATA
Statistics
Matches: 44, Mismatches: 9, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
43 43 0.98
44 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.27, T:0.24
Consensus pattern (43 bp):
TGTAAGACCATGCCTAGGACAGTGGCATCGATATGAGAAAACA
Found at i:26022181 original size:39 final size:39
Alignment explanation
Indices: 26022133--26022339 Score: 215
Period size: 39 Copynumber: 5.2 Consensus size: 39
26022123 CGAAATTTAA
*
26022133 CCGGATATAGCT-ACTCGCTCAAATGCCTTCGGGATATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGAT-TAGC
*
26022173 CCGG-TATAGTAACTCGCACAAATGCCTTCGGGAGTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGA-TTAGC
* * * *
26022212 CTGGATTTAGTAACTCGCACCAATGCCTTCGGGCTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGATTAGC
*
26022251 CCGGA-ATTAGTAACTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA--TTAGC
** * *
26022291 CCGGATATAGTCGCTTAGCACAAAAGCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGA-TTAGC
26022332 CCGGATAT
1 CCGGATAT
26022340 CATTCGAATA
Statistics
Matches: 141, Mismatches: 17, Indels: 17
0.81 0.10 0.10
Matches are distributed among these distances:
38 3 0.02
39 62 0.44
40 45 0.32
41 28 0.20
42 3 0.02
ACGTcount: A:0.26, C:0.27, G:0.23, T:0.25
Consensus pattern (39 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGATTAGC
Found at i:26022262 original size:79 final size:78
Alignment explanation
Indices: 26022129--26022282 Score: 222
Period size: 79 Copynumber: 2.0 Consensus size: 78
26022119 CCTTCGAAAT
* *
26022129 TTAACCGGATATAGCTACTCGCTCAAATGCCTTCGGGATATAGCCCGGTATAGTAACTCGCACAA
1 TTAACCGGATATAGCTACTCGCACAAATGCCTTCGGGATATAGCCCGGAATAGTAACTCGCACAA
26022194 ATGCCTTCGGGAG
66 ATGCCTTCGGGAG
* * *
26022207 TTAACCTGGATTTAG-TAACTCGCACCAATGCCTTCGGGCT-TAGCCCGGAATTAGTAACTCGCA
1 TTAACC-GGATATAGCT-ACTCGCACAAATGCCTTCGGGATATAGCCCGGAA-TAGTAACTCGCA
26022270 CAAATGCCTTCGG
63 CAAATGCCTTCGG
26022283 ATCTTAGTCC
Statistics
Matches: 68, Mismatches: 5, Indels: 5
0.87 0.06 0.06
Matches are distributed among these distances:
78 16 0.24
79 52 0.76
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (78 bp):
TTAACCGGATATAGCTACTCGCACAAATGCCTTCGGGATATAGCCCGGAATAGTAACTCGCACAA
ATGCCTTCGGGAG
Found at i:26030360 original size:40 final size:40
Alignment explanation
Indices: 26030316--26030506 Score: 219
Period size: 39 Copynumber: 4.8 Consensus size: 40
26030306 GGATATAGCT
* *
26030316 ACTCGCTCAAATGCCTTCGGGACATAGCCCGGTTATAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGTA
* *
26030356 ACTCGCACAAATGCCTTCGGGACTTAACCCGATT-TAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGTA
* *
26030395 ACTCGCACCAATGCCTTCGGG-CTTAGCCCGG-AATTAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTA-TAGTA
* * *
26030434 ACTCGCACAAATGCCTTC-GGATCTTAGTCCGGATATAGTC
1 ACTCGCACAAATGCCTTCGGGA-CTTAGCCCGGTTATAGTA
* * *
26030474 GCTTAGCACAAAAGCCTTCGGGACTTAGCCCGG
1 AC-TCGCACAAATGCCTTCGGGACTTAGCCCGG
26030507 ATATCATTCG
Statistics
Matches: 128, Mismatches: 16, Indels: 13
0.82 0.10 0.08
Matches are distributed among these distances:
38 10 0.08
39 47 0.37
40 44 0.34
41 24 0.19
42 3 0.02
ACGTcount: A:0.25, C:0.29, G:0.22, T:0.24
Consensus pattern (40 bp):
ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGTA
Found at i:26039773 original size:27 final size:27
Alignment explanation
Indices: 26039738--26039789 Score: 86
Period size: 27 Copynumber: 1.9 Consensus size: 27
26039728 CTCTTTATTC
*
26039738 TTAGTCTAGATAATAAAAAAATAGTTT
1 TTAGGCTAGATAATAAAAAAATAGTTT
*
26039765 TTAGGCTAGTTAATAAAAAAATAGT
1 TTAGGCTAGATAATAAAAAAATAGT
26039790 CATTACTAGT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.48, C:0.04, G:0.13, T:0.35
Consensus pattern (27 bp):
TTAGGCTAGATAATAAAAAAATAGTTT
Found at i:26047293 original size:47 final size:47
Alignment explanation
Indices: 26047242--26047722 Score: 728
Period size: 47 Copynumber: 10.1 Consensus size: 47
26047232 TTAGGATTTT
*
26047242 ATGTGATGGATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
***
26047289 ATGTGATGAATGTGAACCCGTATATATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAA--C--ATGCGTATGTGTGATAAGGCCGAATGGCCA
26047340 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
* *
26047387 CTGTGATGGATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
***
26047434 ATGTGATGAATGTGAACCCGTATATATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAA--C--ATGCGTATGTGTGATAAGGCCGAATGGCCA
26047485 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
*
26047532 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGTCGAATGGCCA
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
26047579 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
* * *
26047626 ATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
** * * *
26047673 ATGTGATGAATGTGAACATGAATATATGTGGTAAGGCCGAATGGCTA
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
26047720 ATG
1 ATG
26047723 CGAAACATGT
Statistics
Matches: 400, Mismatches: 26, Indels: 16
0.90 0.06 0.04
Matches are distributed among these distances:
47 310 0.77
49 4 0.01
51 86 0.22
ACGTcount: A:0.31, C:0.12, G:0.31, T:0.26
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
Found at i:26047392 original size:145 final size:145
Alignment explanation
Indices: 26047242--26047722 Score: 799
Period size: 145 Copynumber: 3.3 Consensus size: 145
26047232 TTAGGATTTT
*
26047242 ATGTGATGGATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACC
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACC
26047307 CGTATATATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCGTATGTGTGAT
66 CGTATATATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCGTATGTGTGAT
26047372 AAGGCCGAATGGCCA
131 AAGGCCGAATGGCCA
* *
26047387 CTGTGATGGATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACC
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACC
26047452 CGTATATATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCGTATGTGTGAT
66 CGTATATATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCGTATGTGTGAT
26047517 AAGGCCGAATGGCCA
131 AAGGCCGAATGGCCA
*
26047532 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGTCGAATGGCCAATGTGATGAATGTGAA--
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACC
*** * * *
26047595 C--ATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATATGAGAT
66 CGTATATATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCGTATGTGTGAT
26047658 AAGGCCGAATGGCCA
131 AAGGCCGAATGGCCA
** * * *
26047673 ATGTGATGAATGTGAACATGAATATATGTGGTAAGGCCGAATGGCTAATG
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATG
26047723 CGAAACATGT
Statistics
Matches: 320, Mismatches: 16, Indels: 4
0.94 0.05 0.01
Matches are distributed among these distances:
141 115 0.36
143 1 0.00
145 204 0.64
ACGTcount: A:0.31, C:0.12, G:0.31, T:0.26
Consensus pattern (145 bp):
ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACC
CGTATATATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCGTATGTGTGAT
AAGGCCGAATGGCCA
Found at i:26047489 original size:24 final size:24
Alignment explanation
Indices: 26047461--26047536 Score: 61
Period size: 24 Copynumber: 3.2 Consensus size: 24
26047451 CCGTATATAT
26047461 ATGTGTGATAAGGCCGAATGGCCA
1 ATGTGTGATAAGGCCGAATGGCCA
* * **
26047485 ATGTGATGA-ATGTG--AACAT-GCGT
1 ATGTG-TGATAAG-GCCGA-ATGGCCA
26047508 ATGTGTGATAAGGCCGAATGGCCA
1 ATGTGTGATAAGGCCGAATGGCCA
26047532 ATGTG
1 ATGTG
26047537 ATGAATGTGA
Statistics
Matches: 37, Mismatches: 8, Indels: 14
0.63 0.14 0.24
Matches are distributed among these distances:
22 4 0.11
23 12 0.32
24 17 0.46
25 4 0.11
ACGTcount: A:0.29, C:0.13, G:0.33, T:0.25
Consensus pattern (24 bp):
ATGTGTGATAAGGCCGAATGGCCA
Found at i:26047762 original size:46 final size:46
Alignment explanation
Indices: 26047696--26047786 Score: 128
Period size: 46 Copynumber: 2.0 Consensus size: 46
26047686 GAACATGAAT
* * *
26047696 ATATGTGGTAAGGCCGAATGGCTAATGCGAAACATGTATGAGATGG
1 ATATGTGGTAAAGCCAAATGGCTAATGCGAAACATGTACGAGATGG
* * *
26047742 ATATGTGGTAAAGCCAAATGGCTAATGTGAGATATGTACGAGATG
1 ATATGTGGTAAAGCCAAATGGCTAATGCGAAACATGTACGAGATG
26047787 TGTATATATA
Statistics
Matches: 39, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
46 39 1.00
ACGTcount: A:0.34, C:0.10, G:0.31, T:0.25
Consensus pattern (46 bp):
ATATGTGGTAAAGCCAAATGGCTAATGCGAAACATGTACGAGATGG
Found at i:26048038 original size:37 final size:37
Alignment explanation
Indices: 26047935--26048021 Score: 165
Period size: 37 Copynumber: 2.4 Consensus size: 37
26047925 ATATATTCCC
26047935 GGTAAGACCCGATGACTACGTGTGGAGATTATGTCCG
1 GGTAAGACCCGATGACTACGTGTGGAGATTATGTCCG
*
26047972 AGTAAGACCCGATGACTACGTGTGGAGATTATGTCCG
1 GGTAAGACCCGATGACTACGTGTGGAGATTATGTCCG
26048009 GGTAAGACCCGAT
1 GGTAAGACCCGAT
26048022 AACTTCTTGT
Statistics
Matches: 48, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
37 48 1.00
ACGTcount: A:0.26, C:0.20, G:0.31, T:0.23
Consensus pattern (37 bp):
GGTAAGACCCGATGACTACGTGTGGAGATTATGTCCG
Found at i:26049311 original size:27 final size:26
Alignment explanation
Indices: 26049273--26049359 Score: 113
Period size: 27 Copynumber: 3.3 Consensus size: 26
26049263 TGGATGAAGC
26049273 GTTCTGGTGGCTAC-GCCACAAATATCT
1 GTTCTGGTGGCT-CTGCCAC-AATATCT
26049300 GTTCTGGTGGCTCTGCCACAATATCT
1 GTTCTGGTGGCTCTGCCACAATATCT
* * *
26049326 GTATCTAGTGACTCTGTCACAATATCT
1 GT-TCTGGTGGCTCTGCCACAATATCT
26049353 GTTCTGG
1 GTTCTGG
26049360 CAGCCATGCT
Statistics
Matches: 54, Mismatches: 4, Indels: 5
0.86 0.06 0.08
Matches are distributed among these distances:
26 14 0.26
27 40 0.74
ACGTcount: A:0.20, C:0.24, G:0.22, T:0.34
Consensus pattern (26 bp):
GTTCTGGTGGCTCTGCCACAATATCT
Found at i:26056646 original size:27 final size:26
Alignment explanation
Indices: 26056615--26056687 Score: 83
Period size: 27 Copynumber: 2.7 Consensus size: 26
26056605 CAGTGGCTAC
*
26056615 GCCATAAATATCTGTTCTGGCGGCTCT
1 GCCAT-AATATCTGTTCTGGCGACTCT
* *
26056642 GCCATAGTATCTGTATCTGGTGACTCT
1 GCCATAATATCTGT-TCTGGCGACTCT
* *
26056669 GTCACAATATCTGTTCTGG
1 GCCATAATATCTGTTCTGG
26056688 TAGCCATGCT
Statistics
Matches: 39, Mismatches: 6, Indels: 3
0.81 0.12 0.06
Matches are distributed among these distances:
26 13 0.33
27 26 0.67
ACGTcount: A:0.19, C:0.23, G:0.22, T:0.36
Consensus pattern (26 bp):
GCCATAATATCTGTTCTGGCGACTCT
Found at i:26057724 original size:55 final size:55
Alignment explanation
Indices: 26057618--26057730 Score: 136
Period size: 55 Copynumber: 2.1 Consensus size: 55
26057608 CGAGCCTGCC
* * **
26057618 AAAACAACACGGGCGTGCGACACGCCCGTATAGAAGACCCGTGGTTGAACCTGTT
1 AAAACAACACAGGCGTGCGACACGCCCGTATAGAACACCCGTGGTCAAACCTGTT
* * * ** *
26057673 AAAACAGCACAGGCGTGTGACACGCCCGTGTCTAACACCCGTGGTCAAACCTTTT
1 AAAACAACACAGGCGTGCGACACGCCCGTATAGAACACCCGTGGTCAAACCTGTT
26057728 AAA
1 AAA
26057731 TTGACACGAA
Statistics
Matches: 48, Mismatches: 10, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
55 48 1.00
ACGTcount: A:0.30, C:0.28, G:0.24, T:0.18
Consensus pattern (55 bp):
AAAACAACACAGGCGTGCGACACGCCCGTATAGAACACCCGTGGTCAAACCTGTT
Found at i:26071976 original size:63 final size:64
Alignment explanation
Indices: 26071867--26071994 Score: 195
Period size: 63 Copynumber: 2.0 Consensus size: 64
26071857 CGCCACAAAC
* * *
26071867 TTGATACGTGATATTCGCGATAGGTTTTAAAAATTTATAATTAATCGTTCTTGAAACTAACTAT
1 TTGATACGTGATATTCGCGACAGGTTTTAAAAATTTATAATGAATCGTTCTTAAAACTAACTAT
* * *
26071931 TTGAT-CGTGATTTTCGTGACAGGTTTTAAATATTTATAATGAATCGTTCTTAAAACTAACTAT
1 TTGATACGTGATATTCGCGACAGGTTTTAAAAATTTATAATGAATCGTTCTTAAAACTAACTAT
26071994 T
1 T
26071995 GTCACGATGT
Statistics
Matches: 58, Mismatches: 6, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
63 53 0.91
64 5 0.09
ACGTcount: A:0.33, C:0.11, G:0.14, T:0.42
Consensus pattern (64 bp):
TTGATACGTGATATTCGCGACAGGTTTTAAAAATTTATAATGAATCGTTCTTAAAACTAACTAT
Found at i:26077899 original size:15 final size:15
Alignment explanation
Indices: 26077879--26077917 Score: 69
Period size: 15 Copynumber: 2.6 Consensus size: 15
26077869 GTTTTAGCAG
26077879 TTGCTAAAAAGGGCC
1 TTGCTAAAAAGGGCC
26077894 TTGCTAAAAAGGGCC
1 TTGCTAAAAAGGGCC
*
26077909 TTCCTAAAA
1 TTGCTAAAA
26077918 TAAAAGGAGT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
15 23 1.00
ACGTcount: A:0.36, C:0.21, G:0.21, T:0.23
Consensus pattern (15 bp):
TTGCTAAAAAGGGCC
Found at i:26083221 original size:46 final size:45
Alignment explanation
Indices: 26083165--26083332 Score: 166
Period size: 46 Copynumber: 3.6 Consensus size: 45
26083155 TGGTTGAGCA
*
26083165 TCCGAACTCGTTGAGATGAGTCCGAGTTCACCTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCA-CTATGGATGCGAATG
* *
26083211 TCCGAACTCGTTGAGTTGAGTCCGAGTT--C-GTGAGATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTATG-GATGCGAA-T--G
*
26083256 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACT-ATGGATGCGAATG
* *
26083304 -CCTGAGCTCATTGAGTTGAGTCCGAGTTC
1 TCC-GAACTCGTTGAGTTGAGTCCGAGTTC
26083333 GCTTATGGGC
Statistics
Matches: 102, Mismatches: 8, Indels: 24
0.76 0.06 0.18
Matches are distributed among these distances:
42 4 0.04
43 6 0.06
45 3 0.03
46 51 0.50
47 28 0.27
48 1 0.01
49 1 0.01
50 4 0.04
51 4 0.04
ACGTcount: A:0.22, C:0.22, G:0.29, T:0.27
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTATGGATGCGAATG
Found at i:26083321 original size:93 final size:93
Alignment explanation
Indices: 26083162--26083333 Score: 276
Period size: 93 Copynumber: 1.8 Consensus size: 93
26083152 GGATGGTTGA
* *
26083162 GCATCCGAACTCGTTGAGATGAGTCCGAGTTCACCTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGATGAGTCCGAGTTCACCTATGGATGCGAACGTCCGAACTCATTGAGT
26083227 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* *
26083255 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCA-CTCATGGATGCGAACG-CCTGAGCTCATTGA
1 GCATCCGAACTCGTTGAGATGAGTCCGAGTTCACCT-ATGGATGCGAACGTCC-GAACTCATTGA
26083318 GTTGAGTCCGAGTTCG
64 GTTGAGTCCGAGTTCG
26083334 CTTATGGGCG
Statistics
Matches: 73, Mismatches: 4, Indels: 4
0.90 0.05 0.05
Matches are distributed among these distances:
92 4 0.05
93 69 0.95
ACGTcount: A:0.22, C:0.22, G:0.29, T:0.27
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGATGAGTCCGAGTTCACCTATGGATGCGAACGTCCGAACTCATTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:26088345 original size:43 final size:43
Alignment explanation
Indices: 26088254--26088358 Score: 122
Period size: 43 Copynumber: 2.4 Consensus size: 43
26088244 GTGTGATTCG
26088254 TGTAAGACCATGTCTGGGACATTGGCATGGAAGTGAGAAAACA
1 TGTAAGACCATGTCTGGGACATTGGCATGGAAGTGAGAAAACA
* * * * * * *
26088297 CGTAAGACCCTGTCTGGTACATTGGCATTGATA-TGTGATAGCA
1 TGTAAGACCATGTCTGGGACATTGGCATGGA-AGTGAGAAAACA
*
26088340 TGTAAGACCATATCTGGGA
1 TGTAAGACCATGTCTGGGA
26088359 TATATCATAG
Statistics
Matches: 50, Mismatches: 11, Indels: 2
0.79 0.17 0.03
Matches are distributed among these distances:
43 49 0.98
44 1 0.02
ACGTcount: A:0.30, C:0.16, G:0.28, T:0.26
Consensus pattern (43 bp):
TGTAAGACCATGTCTGGGACATTGGCATGGAAGTGAGAAAACA
Found at i:26090069 original size:29 final size:29
Alignment explanation
Indices: 26090008--26090097 Score: 101
Period size: 29 Copynumber: 3.1 Consensus size: 29
26089998 CATCTCATTC
* * ** *
26090008 ATATGGCCCATCAGGCCCAATTCATATTC
1 ATATGGCCCATTAGGCCCAAATCACCTTT
*
26090037 ATATGGGCCATTAGGCCCAAATCACCTTT
1 ATATGGCCCATTAGGCCCAAATCACCTTT
* *
26090066 ATATAGCCCGTTAGGCCCAAATCACC-TT
1 ATATGGCCCATTAGGCCCAAATCACCTTT
26090094 ATAT
1 ATAT
26090098 TCATGCTCAC
Statistics
Matches: 52, Mismatches: 9, Indels: 1
0.84 0.15 0.02
Matches are distributed among these distances:
28 6 0.12
29 46 0.88
ACGTcount: A:0.29, C:0.29, G:0.14, T:0.28
Consensus pattern (29 bp):
ATATGGCCCATTAGGCCCAAATCACCTTT
Found at i:26097117 original size:40 final size:40
Alignment explanation
Indices: 26097073--26097300 Score: 302
Period size: 40 Copynumber: 5.7 Consensus size: 40
26097063 GCTACTTGCT
* *
26097073 CAAATGCCTTCAGGACATAGCCCGATTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGATTATAGTAACTCGCA
* *
26097113 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTGACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGATTATAGTAACTCGCA
26097153 CAAATGCCTTCGGGACTTAGCCCGGA-TATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCC-GATTATAGTAACTCGCA
26097193 CAAATGCCTTCGGGACTTAGCCCGGA-TATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCC-GATTATAGTAACTCGCA
* * ** * *
26097233 CAAAAGCCTTCGGG-TTTAGCCC-AAAATTAGTCACTAGCA
1 CAAATGCCTTCGGGACTTAGCCCGATTA-TAGTAACTCGCA
*
26097272 CAAATGCCTTCGGGACTTAGCCCGGTTAT
1 CAAATGCCTTCGGGACTTAGCCCGATTAT
26097301 CATCCAAACA
Statistics
Matches: 167, Mismatches: 16, Indels: 10
0.87 0.08 0.05
Matches are distributed among these distances:
37 1 0.01
38 1 0.01
39 30 0.18
40 133 0.80
41 2 0.01
ACGTcount: A:0.28, C:0.27, G:0.21, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGATTATAGTAACTCGCA
Found at i:26101870 original size:40 final size:40
Alignment explanation
Indices: 26101819--26102046 Score: 316
Period size: 40 Copynumber: 5.7 Consensus size: 40
26101809 GCTACTTGCT
* *
26101819 CAAATGCCTTCGGGACATAGCCCGGTTATCGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
*
26101859 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTGACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
*
26101899 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
* * *
26101939 CAAATGCCTTCGGGACTTATCCCGGATATAGTAACTTGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
* * * * * *
26101979 CAAAAGCCTTCGAG-TTTAGCCCGG-AATTAGTCACTAGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTA-TAGTAACTCGCA
26102018 CAAATGCCTTCGGGACTTAGCCCGGTTAT
1 CAAATGCCTTCGGGACTTAGCCCGGTTAT
26102047 CATCCGAATA
Statistics
Matches: 167, Mismatches: 18, Indels: 6
0.87 0.09 0.03
Matches are distributed among these distances:
38 1 0.01
39 30 0.18
40 135 0.81
41 1 0.01
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
Found at i:26104587 original size:54 final size:55
Alignment explanation
Indices: 26104463--26104595 Score: 160
Period size: 54 Copynumber: 2.4 Consensus size: 55
26104453 GTGGGCAATC
* * * *
26104463 CTGCCAAAACAACAAGGGCGTGCGACACGCCCGTGTCTACTAACCATGGTCAAAA
1 CTGCCAAAACAACACGGGCGTGCGACACACCCATGTCTACCAACCATGGTCAAAA
** * * *
26104518 CTGCCAAATTAACACGGGCGTGCGACACACCCATGTC-ACCACCCGTGGTCAAGA
1 CTGCCAAAACAACACGGGCGTGCGACACACCCATGTCTACCAACCATGGTCAAAA
* *
26104572 CTGTCAAAAGAACACGGGCGTGCG
1 CTGCCAAAACAACACGGGCGTGCG
26104596 CATTTATCCA
Statistics
Matches: 66, Mismatches: 12, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
54 34 0.52
55 32 0.48
ACGTcount: A:0.30, C:0.32, G:0.24, T:0.14
Consensus pattern (55 bp):
CTGCCAAAACAACACGGGCGTGCGACACACCCATGTCTACCAACCATGGTCAAAA
Found at i:26106147 original size:26 final size:26
Alignment explanation
Indices: 26106117--26106199 Score: 84
Period size: 26 Copynumber: 3.2 Consensus size: 26
26106107 ATTGATTGAT
26106117 TGAATTTCAAAGTATGATTTGTAACG
1 TGAATTTCAAAGTATGATTTGTAACG
* *
26106143 TGAATATTGATAGAGTATTGATTGGT----
1 TGAAT-TTCA-A-AGTA-TGATTTGTAACG
26106169 TGAATTTCAAAGTATGATTTGTAACG
1 TGAATTTCAAAGTATGATTTGTAACG
26106195 TGAAT
1 TGAAT
26106200 ATTGATACAT
Statistics
Matches: 45, Mismatches: 4, Indels: 16
0.69 0.06 0.25
Matches are distributed among these distances:
22 7 0.16
23 4 0.09
24 1 0.02
25 3 0.07
26 15 0.33
27 3 0.07
28 1 0.02
29 4 0.09
30 7 0.16
ACGTcount: A:0.34, C:0.05, G:0.22, T:0.40
Consensus pattern (26 bp):
TGAATTTCAAAGTATGATTTGTAACG
Found at i:26106159 original size:52 final size:52
Alignment explanation
Indices: 26106102--26106206 Score: 201
Period size: 52 Copynumber: 2.0 Consensus size: 52
26106092 AAATAGGTTA
26106102 AGAGTATTGATTGATTGAATTTCAAAGTATGATTTGTAACGTGAATATTGAT
1 AGAGTATTGATTGATTGAATTTCAAAGTATGATTTGTAACGTGAATATTGAT
*
26106154 AGAGTATTGATTGGTTGAATTTCAAAGTATGATTTGTAACGTGAATATTGAT
1 AGAGTATTGATTGATTGAATTTCAAAGTATGATTTGTAACGTGAATATTGAT
26106206 A
1 A
26106207 CATGAAAAGT
Statistics
Matches: 52, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
52 52 1.00
ACGTcount: A:0.34, C:0.04, G:0.22, T:0.40
Consensus pattern (52 bp):
AGAGTATTGATTGATTGAATTTCAAAGTATGATTTGTAACGTGAATATTGAT
Found at i:26113582 original size:28 final size:27
Alignment explanation
Indices: 26113539--26113618 Score: 106
Period size: 27 Copynumber: 2.9 Consensus size: 27
26113529 GGAGGAAGCA
*
26113539 TTCTGGTGGCTATGCCACAAATATCTGT
1 TTCTGGTGGCTCTGCCAC-AATATCTGT
*
26113567 TTCTGGTGGCTCTGCCATAATATCTGT
1 TTCTGGTGGCTCTGCCACAATATCTGT
* * *
26113594 ATCTGGTGACTCTGTCACAATATCT
1 TTCTGGTGGCTCTGCCACAATATCT
26113619 ATTCTGGCAG
Statistics
Matches: 46, Mismatches: 6, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
27 30 0.65
28 16 0.35
ACGTcount: A:0.20, C:0.23, G:0.20, T:0.38
Consensus pattern (27 bp):
TTCTGGTGGCTCTGCCACAATATCTGT
Found at i:26130318 original size:14 final size:14
Alignment explanation
Indices: 26130299--26130330 Score: 55
Period size: 14 Copynumber: 2.3 Consensus size: 14
26130289 ACTTACTCGG
26130299 TTTATAAAAACACA
1 TTTATAAAAACACA
*
26130313 TTTATAACAACACA
1 TTTATAAAAACACA
26130327 TTTA
1 TTTA
26130331 GCTCATTTAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.50, C:0.16, G:0.00, T:0.34
Consensus pattern (14 bp):
TTTATAAAAACACA
Found at i:26148249 original size:54 final size:55
Alignment explanation
Indices: 26148099--26148600 Score: 465
Period size: 54 Copynumber: 9.3 Consensus size: 55
26148089 CTTGGTTTAC
* * * * * * *
26148099 AAAATTACCAAAATACCCTTGATTAGTAAAATTACCAAAATACCCCTAGT-T-TGG
1 AAAATTACCGAAATACCCTCGATTTGTAAAATTATCGAAATA-CCCTTGTATGTGT
* *
26148153 AAAATTACTGAAATACCC-CGATTTGTAAAATTATTGAAATACCCTTGTA-GTGT
1 AAAATTACCGAAATACCCTCGATTTGTAAAATTATCGAAATACCCTTGTATGTGT
* * * * *
26148206 AGAATTACCGAAATACCTTCGATTTGTAAAATTAAT-GAGATACCTTTG-ATTTGT
1 AAAATTACCGAAATACCCTCGATTTGTAAAATT-ATCGAAATACCCTTGTATGTGT
* * * * ** *
26148260 AAAATAACCGAAACACCCTCG-TAGTGTAGAATTATCGAAATA-CCTTCAATTTGT
1 AAAATTACCGAAATACCCTCGAT-TTGTAAAATTATCGAAATACCCTTGTATGTGT
* *
26148314 AAAATTACCGAAATACCTTCGATTTGTAAAATTATCAAAATACCCTTGTA-GTGT
1 AAAATTACCGAAATACCCTCGATTTGTAAAATTATCGAAATACCCTTGTATGTGT
* * * * * *** *
26148368 AGAATTATCGAAATACCCTTGATTTGTAAAATTTTTGAAATA-CCTCCAATTTGT
1 AAAATTACCGAAATACCCTCGATTTGTAAAATTATCGAAATACCCTTGTATGTGT
* * * *
26148422 AAAATTATCAAAATGTCCCT-GATTTGTAAAATTATCGAAATACCCTTGCA-GTGT
1 AAAATTACCGAAAT-ACCCTCGATTTGTAAAATTATCGAAATACCCTTGTATGTGT
* * * * *
26148476 AGAATTATCGAAATACCCTCGATTTGTAAAATTACCGAAATACTCTTG-ATTTGT
1 AAAATTACCGAAATACCCTCGATTTGTAAAATTATCGAAATACCCTTGTATGTGT
* * *
26148530 AAAATTATCGAAATACCCTCGATTTATAAAATTATCGAAATACCCTT-TTTGTGT
1 AAAATTACCGAAATACCCTCGATTTGTAAAATTATCGAAATACCCTTGTATGTGT
*
26148584 AGAATTACCGAAATACC
1 AAAATTACCGAAATACC
26148601 TTTGTAGTCT
Statistics
Matches: 365, Mismatches: 67, Indels: 32
0.79 0.14 0.07
Matches are distributed among these distances:
52 6 0.02
53 51 0.14
54 292 0.80
55 16 0.04
ACGTcount: A:0.38, C:0.17, G:0.12, T:0.33
Consensus pattern (55 bp):
AAAATTACCGAAATACCCTCGATTTGTAAAATTATCGAAATACCCTTGTATGTGT
Found at i:26148589 original size:27 final size:26
Alignment explanation
Indices: 26148081--26148600 Score: 352
Period size: 27 Copynumber: 19.3 Consensus size: 26
26148071 TAGAATTACT
* ** *
26148081 GAAATACCCTTGGTTTACAAAATTACC
1 GAAATACCCTT-ATTTGTAAAATTATC
* * *
26148108 AAAATACCCTTGATTAGTAAAATTACC
1 GAAATACCCTT-ATTTGTAAAATTATC
* * *
26148135 AAAATACCCCTAGTTTGGAAAATTA-C
1 GAAATACCCTTA-TTTGTAAAATTATC
** *
26148161 TGAAATACCCCGATTTGTAAAATTATT
1 -GAAATACCCTTATTTGTAAAATTATC
* * * *
26148188 GAAATACCCTTGTAGTGTAGAATTACC
1 GAAATACCCTTAT-TTGTAAAATTATC
26148215 GAAATA-CCTTCGATTTGTAAAATTAAT-
1 GAAATACCCTT--ATTTGTAAAATT-ATC
* * * *
26148242 GAGATACCTTTGATTTGTAAAATAACC
1 GAAATACCCTT-ATTTGTAAAATTATC
* * *
26148269 GAAACACCCTCGTA-GTGTAGAATTATC
1 GAAATACCCT--TATTTGTAAAATTATC
*
26148296 GAAATA-CCTTCAATTTGTAAAATTACC
1 GAAATACCCTT--ATTTGTAAAATTATC
26148323 GAAATA-CCTTCGATTTGTAAAATTATC
1 GAAATACCCTT--ATTTGTAAAATTATC
* * * *
26148350 AAAATACCCTTGTAGTGTAGAATTATC
1 GAAATACCCTTAT-TTGTAAAATTATC
* *
26148377 GAAATACCCTTGATTTGTAAAATTTTT
1 GAAATACCCTT-ATTTGTAAAATTATC
**
26148404 GAAATACCTCCAATTTGTAAAATTATC
1 GAAATACC-CTTATTTGTAAAATTATC
* * *
26148431 AAAATGTCCCTGATTTGTAAAATTATC
1 GAAAT-ACCCTTATTTGTAAAATTATC
* *
26148458 GAAATACCCTTGCA-GTGTAGAATTATC
1 GAAATACCCTT--ATTTGTAAAATTATC
* *
26148485 GAAATACCCTCGATTTGTAAAATTACC
1 GAAATACCCT-TATTTGTAAAATTATC
*
26148512 GAAATACTCTTGATTTGTAAAATTATC
1 GAAATACCCTT-ATTTGTAAAATTATC
* *
26148539 GAAATACCCTCGATTTATAAAATTATC
1 GAAATACCCT-TATTTGTAAAATTATC
* * *
26148566 GAAATACCCTTTTTGTGTAGAATTACC
1 GAAATACCCTTATT-TGTAAAATTATC
26148593 GAAATACC
1 GAAATACC
26148601 TTTGTAGTCT
Statistics
Matches: 389, Mismatches: 78, Indels: 52
0.75 0.15 0.10
Matches are distributed among these distances:
24 1 0.00
26 40 0.10
27 332 0.85
28 15 0.04
29 1 0.00
ACGTcount: A:0.38, C:0.17, G:0.12, T:0.33
Consensus pattern (26 bp):
GAAATACCCTTATTTGTAAAATTATC
Found at i:26148614 original size:81 final size:80
Alignment explanation
Indices: 26148081--26148615 Score: 440
Period size: 81 Copynumber: 6.6 Consensus size: 80
26148071 TAGAATTACT
* ** * * * *
26148081 GAAATACCCTTGGTTTACAAAATTACCAAAATACCCTTG-ATTAGTAAAATTACCAAAATACCC-
1 GAAATACCCTT-ATTTGTAAAATTACCGAAATACCCTTGTAGT-GTAAAATTATCGAAATACCCT
* *
26148144 CTAGTTTGGAAAATTA-C
64 CGA-TTTGTAAAATTATC
** ** * * *
26148161 TGAAATACCCCGATTTGTAAAATTATTGAAATACCCTTGTAGTGTAGAATTACCGAAATACCTTC
1 -GAAATACCCTTATTTGTAAAATTACCGAAATACCCTTGTAGTGTAAAATTATCGAAATACCCTC
26148226 GATTTGTAAAATTAAT-
65 GATTTGTAAAATT-ATC
* * * * * * *
26148242 GAGATACCTTTGATTTGTAAAATAACCGAAACACCCTCGTAGTGTAGAATTATCGAAATACCTTC
1 GAAATACCCTT-ATTTGTAAAATTACCGAAATACCCTTGTAGTGTAAAATTATCGAAATACCCTC
* *
26148307 AATTTGTAAAATTACC
65 GATTTGTAAAATTATC
* * *
26148323 GAAATA-CCTTCGATTTGTAAAATTATCAAAATACCCTTGTAGTGTAGAATTATCGAAATACCCT
1 GAAATACCCTT--ATTTGTAAAATTACCGAAATACCCTTGTAGTGTAAAATTATCGAAATACCCT
* * *
26148387 TGATTTGTAAAATTTTT
64 CGATTTGTAAAATTATC
** * * * *
26148404 GAAATACCTCCAATTTGTAAAATTATCAAAATGTCCC-TG-ATTTGTAAAATTATCGAAATACCC
1 GAAATACC-CTTATTTGTAAAATTACCGAAAT-ACCCTTGTA-GTGTAAAATTATCGAAATACCC
* * *
26148467 TTGCA-GTGTAGAATTATC
63 TCG-ATTTGTAAAATTATC
* * *
26148485 GAAATACCCTCGATTTGTAAAATTACCGAAATACTCTTG-ATTTGTAAAATTATCGAAATACCCT
1 GAAATACCCT-TATTTGTAAAATTACCGAAATACCCTTGTA-GTGTAAAATTATCGAAATACCCT
*
26148549 CGATTTATAAAATTATC
64 CGATTTGTAAAATTATC
* * * *
26148566 GAAATACCCTTTTTGTGTAGAATTACCGAAATACCTTTGTAGTCTAAAAT
1 GAAATACCCTTATT-TGTAAAATTACCGAAATACCCTTGTAGTGTAAAAT
26148616 GACCAGCATA
Statistics
Matches: 372, Mismatches: 65, Indels: 34
0.79 0.14 0.07
Matches are distributed among these distances:
80 66 0.18
81 299 0.80
82 6 0.02
83 1 0.00
ACGTcount: A:0.37, C:0.17, G:0.12, T:0.34
Consensus pattern (80 bp):
GAAATACCCTTATTTGTAAAATTACCGAAATACCCTTGTAGTGTAAAATTATCGAAATACCCTCG
ATTTGTAAAATTATC
Found at i:26148925 original size:41 final size:41
Alignment explanation
Indices: 26148879--26148998 Score: 197
Period size: 41 Copynumber: 3.0 Consensus size: 41
26148869 AGGAAGTATA
26148879 TGAGGATCGCATGGTTGCTTGACGACCGTGGATCCACCGAT
1 TGAGGATCGCATGGTTGCTTGACGACCGTGGATCCACCGAT
**
26148920 TGAGGATTACATGGTTGCTTGACGACCGTGGATCCACCGAT
1 TGAGGATCGCATGGTTGCTTGACGACCGTGGATCCACCGAT
* *
26148961 TGAGGATCGCATGGTTGCTTGATGA-TGTGGATCCACCG
1 TGAGGATCGCATGGTTGCTTGACGACCGTGGATCCACCG
26148999 GTGGCTTTTA
Statistics
Matches: 73, Mismatches: 6, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
40 12 0.16
41 61 0.84
ACGTcount: A:0.20, C:0.22, G:0.32, T:0.27
Consensus pattern (41 bp):
TGAGGATCGCATGGTTGCTTGACGACCGTGGATCCACCGAT
Found at i:26151396 original size:34 final size:34
Alignment explanation
Indices: 26151358--26151445 Score: 158
Period size: 34 Copynumber: 2.6 Consensus size: 34
26151348 GTACTGATAT
26151358 GGGCTAAGGCCCAGACTGCTTTTATCACTGAAAA
1 GGGCTAAGGCCCAGACTGCTTTTATCACTGAAAA
* *
26151392 GGGCTAGGGCCCAGACTGCTTTTATCACTGAAAT
1 GGGCTAAGGCCCAGACTGCTTTTATCACTGAAAA
26151426 GGGCTAAGGCCCAGACTGCT
1 GGGCTAAGGCCCAGACTGCT
26151446 ACTGTTACTG
Statistics
Matches: 51, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
34 51 1.00
ACGTcount: A:0.25, C:0.25, G:0.27, T:0.23
Consensus pattern (34 bp):
GGGCTAAGGCCCAGACTGCTTTTATCACTGAAAA
Found at i:26151456 original size:34 final size:34
Alignment explanation
Indices: 26151350--26151458 Score: 137
Period size: 34 Copynumber: 3.2 Consensus size: 34
26151340 TGCATACTGT
* **
26151350 ACTGATATGGGCTAAGGCCCAGACTGCTTTTATC
1 ACTGAAATGGGCTAAGGCCCAGACTGCTACTATC
* * **
26151384 ACTGAAAAGGGCTAGGGCCCAGACTGCTTTTATC
1 ACTGAAATGGGCTAAGGCCCAGACTGCTACTATC
* *
26151418 ACTGAAATGGGCTAAGGCCCAGACTGCTACTGTT
1 ACTGAAATGGGCTAAGGCCCAGACTGCTACTATC
26151452 ACTGAAA
1 ACTGAAA
26151459 AGGGGGTTAA
Statistics
Matches: 66, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
34 66 1.00
ACGTcount: A:0.28, C:0.23, G:0.25, T:0.25
Consensus pattern (34 bp):
ACTGAAATGGGCTAAGGCCCAGACTGCTACTATC
Found at i:26152331 original size:36 final size:36
Alignment explanation
Indices: 26152280--26152352 Score: 128
Period size: 36 Copynumber: 2.0 Consensus size: 36
26152270 AGTAGCGAAA
26152280 ATGTACCATTACTAGTCAAATTATTAATTTAGCCAT
1 ATGTACCATTACTAGTCAAATTATTAATTTAGCCAT
* *
26152316 ATGTACCATTGCTAGTTAAATTATTAATTTAGCCAT
1 ATGTACCATTACTAGTCAAATTATTAATTTAGCCAT
26152352 A
1 A
26152353 CATCATGCAT
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
36 35 1.00
ACGTcount: A:0.36, C:0.15, G:0.10, T:0.40
Consensus pattern (36 bp):
ATGTACCATTACTAGTCAAATTATTAATTTAGCCAT
Found at i:26157957 original size:40 final size:40
Alignment explanation
Indices: 26157863--26158007 Score: 193
Period size: 40 Copynumber: 3.6 Consensus size: 40
26157853 TACTCGAATG
*
26157863 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGCGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCT-AGCGACT
* *
26157904 ACATCCGGACTAAGAT-CCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAG-TCCCGAAGGCATTTGTGCTAGCGACT
* * *
26157944 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGCGACT
* *
26157984 ATATCCGGGTTAAGACCCGAAGGC
1 ATATCCGGGCTAAGTCCCGAAGGC
26158008 CTTGTGCGAG
Statistics
Matches: 92, Mismatches: 10, Indels: 5
0.86 0.09 0.05
Matches are distributed among these distances:
39 1 0.01
40 62 0.67
41 28 0.30
42 1 0.01
ACGTcount: A:0.26, C:0.25, G:0.26, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGCGACT
Found at i:26165908 original size:40 final size:41
Alignment explanation
Indices: 26165808--26165912 Score: 131
Period size: 41 Copynumber: 2.6 Consensus size: 41
26165798 TACTCGAATG
* * *
26165808 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGCGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAAGCGACC
* * *
26165849 ACATCCGAGCTAAGTCCCGAAGGCATTTATGCT-AGTGACC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAAGCGACC
* *
26165889 ATATCCGGGTTAAGACCCGAAGGC
1 ATATCCGGGCTAAGTCCCGAAGGC
26165913 CTTGTGCGAG
Statistics
Matches: 54, Mismatches: 10, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
40 25 0.46
41 29 0.54
ACGTcount: A:0.26, C:0.26, G:0.26, T:0.23
Consensus pattern (41 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAAGCGACC
Found at i:26177116 original size:16 final size:15
Alignment explanation
Indices: 26177095--26177125 Score: 53
Period size: 16 Copynumber: 2.0 Consensus size: 15
26177085 GAAACTAAAT
26177095 TAATAAATAATAATAA
1 TAATAAATAA-AATAA
26177111 TAATAAATAAAATAA
1 TAATAAATAAAATAA
26177126 AATTAATTTG
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 5 0.33
16 10 0.67
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (15 bp):
TAATAAATAAAATAA
Found at i:26182763 original size:44 final size:44
Alignment explanation
Indices: 26182700--26182786 Score: 156
Period size: 44 Copynumber: 2.0 Consensus size: 44
26182690 ATTACATGTA
*
26182700 TCGCATCCATAATGAACTCGGACCAACTCAACGAGCTCAGATGC
1 TCGCATCCATAATGAACTCGGAACAACTCAACGAGCTCAGATGC
*
26182744 TCGCATCCATACTGAACTCGGAACAACTCAACGAGCTCAGATG
1 TCGCATCCATAATGAACTCGGAACAACTCAACGAGCTCAGATG
26182787 ACTCATACAT
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
44 41 1.00
ACGTcount: A:0.32, C:0.31, G:0.18, T:0.18
Consensus pattern (44 bp):
TCGCATCCATAATGAACTCGGAACAACTCAACGAGCTCAGATGC
Found at i:26186432 original size:27 final size:27
Alignment explanation
Indices: 26186389--26186558 Score: 178
Period size: 27 Copynumber: 6.3 Consensus size: 27
26186379 TGGATAAGTT
* * *
26186389 GTAGAATTACCGTAATACCTCTGTAGG
1 GTAGAATTATCGAAATACCCCTGTAGG
*
26186416 GTAGAATTATTGAAATACCCCTGTAGG
1 GTAGAATTATCGAAATACCCCTGTAGG
*
26186443 GTAGAATTAGCGAAATACCCCTGTAGG
1 GTAGAATTATCGAAATACCCCTGTAGG
* * *
26186470 ATAGAATTACCGAAATACCCTTGTAGG
1 GTAGAATTATCGAAATACCCCTGTAGG
* ** **
26186497 GTGGAAAAATTAAAATACCCCTGTAGG
1 GTAGAATTATCGAAATACCCCTGTAGG
* * * *
26186524 GTAGAATTACCGAGATACCCTTGTGGG
1 GTAGAATTATCGAAATACCCCTGTAGG
*
26186551 GTAAAATT
1 GTAGAATT
26186559 GCCATTTTGC
Statistics
Matches: 116, Mismatches: 27, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
27 116 1.00
ACGTcount: A:0.34, C:0.16, G:0.23, T:0.26
Consensus pattern (27 bp):
GTAGAATTATCGAAATACCCCTGTAGG
Found at i:26186525 original size:81 final size:81
Alignment explanation
Indices: 26186390--26186543 Score: 229
Period size: 81 Copynumber: 1.9 Consensus size: 81
26186380 GGATAAGTTG
* ** * *
26186390 TAGAATTACCGTAATACCTCTGTAGGGTAGAATTATTGAAATACCCCTGTAGGGTAGAATTAGCG
1 TAGAATTACCGAAATACCTCTGTAGGGTAGAAAAATTAAAATACCCCTGTAGGGTAGAATTACCG
26186455 AAATACCCCTGTAGGA
66 AAATACCCCTGTAGGA
*
26186471 TAGAATTACCGAAATACC-CTTGTAGGGTGGAAAAATTAAAATACCCCTGTAGGGTAGAATTACC
1 TAGAATTACCGAAATACCTC-TGTAGGGTAGAAAAATTAAAATACCCCTGTAGGGTAGAATTACC
*
26186535 GAGATACCC
65 GAAATACCC
26186544 TTGTGGGGTA
Statistics
Matches: 65, Mismatches: 7, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
80 1 0.02
81 64 0.98
ACGTcount: A:0.35, C:0.18, G:0.21, T:0.25
Consensus pattern (81 bp):
TAGAATTACCGAAATACCTCTGTAGGGTAGAAAAATTAAAATACCCCTGTAGGGTAGAATTACCG
AAATACCCCTGTAGGA
Found at i:26206822 original size:32 final size:32
Alignment explanation
Indices: 26206757--26206823 Score: 89
Period size: 32 Copynumber: 2.1 Consensus size: 32
26206747 AGTGAACAAG
* * *
26206757 TAAGGTTTTTAGTCCTTCTATAAATGTAAGGA
1 TAAGGTTCTTAATCCTTCTATAAACGTAAGGA
* *
26206789 TAAGGTTCTTAATCCTTCTATAAGCGTAGGGA
1 TAAGGTTCTTAATCCTTCTATAAACGTAAGGA
26206821 TAA
1 TAA
26206824 AGAGAATGAA
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
32 30 1.00
ACGTcount: A:0.31, C:0.12, G:0.19, T:0.37
Consensus pattern (32 bp):
TAAGGTTCTTAATCCTTCTATAAACGTAAGGA
Found at i:26207509 original size:45 final size:44
Alignment explanation
Indices: 26207388--26207574 Score: 169
Period size: 45 Copynumber: 4.2 Consensus size: 44
26207378 GTTATATTCC
* * *
26207388 TAAAATAAGTAAGACCATAGCTAAAAGATGCTATGGCTTCATGA
1 TAAAATAAGTAAGACCATAACTAAAAGATGTTATGGCATCATGA
* * * * *
26207432 TAAAAATATGTTAGACAATAACTAAAAGATGTTATGGCACCATGG
1 T-AAAATAAGTAAGACCATAACTAAAAGATGTTATGGCATCATGA
* * * *
26207477 TAAAGATAAGTAAGACCATAATTGAAGGATGTTATCGCATCATGA
1 TAAA-ATAAGTAAGACCATAACTAAAAGATGTTATGGCATCATGA
** ** * * *
26207522 TATAAATAAGTAAGATGATGGCTAAAAAACGTTATGGCATCATGG
1 TA-AAATAAGTAAGACCATAACTAAAAGATGTTATGGCATCATGA
26207567 T-AAATAAG
1 TAAAATAAG
26207575 ACTAAGTCCA
Statistics
Matches: 112, Mismatches: 28, Indels: 7
0.76 0.19 0.05
Matches are distributed among these distances:
43 7 0.06
44 4 0.04
45 99 0.88
46 2 0.02
ACGTcount: A:0.44, C:0.11, G:0.19, T:0.26
Consensus pattern (44 bp):
TAAAATAAGTAAGACCATAACTAAAAGATGTTATGGCATCATGA
Found at i:26207607 original size:90 final size:89
Alignment explanation
Indices: 26207388--26207607 Score: 205
Period size: 90 Copynumber: 2.4 Consensus size: 89
26207378 GTTATATTCC
* ** * * *
26207388 TAAA-ATAAGTAAGACCATAGCTAAAAGATGCTATGGCTTCATGATAAAAATATGTTAGACAATA
1 TAAAGATAAGTAAGACCATA-ATTGAAGATGCTATGGCATCATGATAAAAATAAGTAAGACAATA
* *
26207452 ACTAAAAGATGTTATGGCACCATGG
65 ACTAAAAAACGTTATGGCACCATGG
* * * ** *
26207477 TAAAGATAAGTAAGACCATAATTGAAGGATGTTATCGCATCATGATATAAATAAGTAAGATGATG
1 TAAAGATAAGTAAGACCATAATTGAA-GATGCTATGGCATCATGATAAAAATAAGTAAGACAATA
* *
26207542 GCTAAAAAACGTTATGGCATCATGG
65 ACTAAAAAACGTTATGGCACCATGG
*
26207567 T-AA-ATAAGACTAAGTCCATAGA-TGTAAGATGCTATGGCATC
1 TAAAGATAAG--TAAGACCATA-ATTG-AAGATGCTATGGCATC
26207608 CTAGTAGTCC
Statistics
Matches: 106, Mismatches: 19, Indels: 11
0.78 0.14 0.08
Matches are distributed among these distances:
88 5 0.05
89 9 0.08
90 89 0.84
91 3 0.03
ACGTcount: A:0.42, C:0.12, G:0.20, T:0.26
Consensus pattern (89 bp):
TAAAGATAAGTAAGACCATAATTGAAGATGCTATGGCATCATGATAAAAATAAGTAAGACAATAA
CTAAAAAACGTTATGGCACCATGG
Found at i:26207728 original size:27 final size:27
Alignment explanation
Indices: 26207695--26207789 Score: 111
Period size: 27 Copynumber: 3.5 Consensus size: 27
26207685 AGTTCAAAGA
26207695 GACATTAAACACAAGATAGTCCGATGG
1 GACATTAAACACAAGATAGTCCGATGG
* * *
26207722 GACATTAAACACGAGATAG-CCTGACGA
1 GACATTAAACACAAGATAGTCC-GATGG
* *
26207749 GACATTAAACATAGGATAGTCCGATGG
1 GACATTAAACACAAGATAGTCCGATGG
* *
26207776 AACACTAAACACAA
1 GACATTAAACACAA
26207790 AATGGTCCAT
Statistics
Matches: 54, Mismatches: 12, Indels: 4
0.77 0.17 0.06
Matches are distributed among these distances:
26 2 0.04
27 50 0.93
28 2 0.04
ACGTcount: A:0.43, C:0.20, G:0.20, T:0.17
Consensus pattern (27 bp):
GACATTAAACACAAGATAGTCCGATGG
Found at i:26228641 original size:42 final size:43
Alignment explanation
Indices: 26228541--26228697 Score: 194
Period size: 43 Copynumber: 3.7 Consensus size: 43
26228531 AGCTCGTACA
*
26228541 ATGCCAACATCCCAGACGTGGTCTTACATGTAATCAAATATTG
1 ATGCCAACGTCCCAGACGTGGTCTTACATGTAATCAAATATTG
**
26228584 ATGCC-ACTGTCCCAGACAAGGTCTTACATGTAATCAAATA-TG
1 ATGCCAAC-GTCCCAGACGTGGTCTTACATGTAATCAAATATTG
* * *
26228626 ATGCCAACGTCCCAGACGTGGTCTTACACGTAAATCATAA-GTCG
1 ATGCCAACGTCCCAGACGTGGTCTTACATGT-AATCA-AATATTG
* *
26228670 ATGCCAACATCCCATACGTGGTCTTACA
1 ATGCCAACGTCCCAGACGTGGTCTTACA
26228698 CGATAACACA
Statistics
Matches: 99, Mismatches: 10, Indels: 9
0.84 0.08 0.08
Matches are distributed among these distances:
42 29 0.29
43 41 0.41
44 29 0.29
ACGTcount: A:0.31, C:0.26, G:0.17, T:0.25
Consensus pattern (43 bp):
ATGCCAACGTCCCAGACGTGGTCTTACATGTAATCAAATATTG
Found at i:26232846 original size:23 final size:24
Alignment explanation
Indices: 26232809--26232853 Score: 65
Period size: 23 Copynumber: 1.9 Consensus size: 24
26232799 CTTCCTTTGA
26232809 AAAAAAAAAGAAAACAAAAAGATG
1 AAAAAAAAAGAAAACAAAAAGATG
* *
26232833 AAAAAAATAG-AAACAGAAAGA
1 AAAAAAAAAGAAAACAAAAAGA
26232854 AAACCACCTT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
23 10 0.53
24 9 0.47
ACGTcount: A:0.78, C:0.04, G:0.13, T:0.04
Consensus pattern (24 bp):
AAAAAAAAAGAAAACAAAAAGATG
Found at i:26233688 original size:79 final size:79
Alignment explanation
Indices: 26233439--26233691 Score: 319
Period size: 79 Copynumber: 3.2 Consensus size: 79
26233429 AGGATTAGCA
* ** * *
26233439 GCTTCAATCTAC-CCTACTAGAGATGGGATTTACTATCTTCAGTCTGCTCCGCTGCAGCTTTAGG
1 GCTTCAATCTACTCC-ACTACAGATGGGATTTGTTGTCTTCAGTCTGCTCCGCTGCAACTTTAGG
*
26233503 GAGATAAGGCTGGCG
65 GAGATAAGGCTGGTG
* ** * * *
26233518 ACTTCAATCTGTTCCACTGCAGATGGGATTTGTTGTCTTCAGTCTACTCTGCTGCAACTTTAGGG
1 GCTTCAATCTACTCCACTACAGATGGGATTTGTTGTCTTCAGTCTGCTCCGCTGCAACTTTAGGG
* *
26233583 AGGTAAAGCTGGTG
66 AGATAAGGCTGGTG
* * * * *
26233597 GCTTCAATCTACTCCACAACATATGGGATTTGTTGTCTTCAGTCTGCTCCACTGCAACTTCAAGG
1 GCTTCAATCTACTCCACTACAGATGGGATTTGTTGTCTTCAGTCTGCTCCGCTGCAACTTTAGGG
26233662 AGATAAGGCTGGTG
66 AGATAAGGCTGGTG
26233676 GCTTCAATCTACTCCA
1 GCTTCAATCTACTCCA
26233692 TTGCAACTTT
Statistics
Matches: 146, Mismatches: 27, Indels: 2
0.83 0.15 0.01
Matches are distributed among these distances:
79 144 0.99
80 2 0.01
ACGTcount: A:0.22, C:0.24, G:0.23, T:0.31
Consensus pattern (79 bp):
GCTTCAATCTACTCCACTACAGATGGGATTTGTTGTCTTCAGTCTGCTCCGCTGCAACTTTAGGG
AGATAAGGCTGGTG
Found at i:26233888 original size:143 final size:143
Alignment explanation
Indices: 26233630--26234436 Score: 1051
Period size: 143 Copynumber: 5.6 Consensus size: 143
26233620 TGGGATTTGT
* * * *
26233630 TGTCTTCAGTCTGCTCCACTGCAACTTCAAGGAGATAAGGCTGGTGGCTTCAATCTACTCCATTG
1 TGTCTTCAGTCTGCTCCGCTGCAACTTCAGGGAGATAAGGCTGGTGGCTTCAATCTGCTCCACTG
* * ** * *
26233695 CAACTTTAGGAAGATAAGATTTGCCATAATTTATAGCTTTAATATGTTCCACTGCAACG-CTAGG
66 CAACTTCAAGAAGATAAGATCCGCCATAATTTGTAGCTTTAATCTGTTCCACTGCAACGTC-AGG
*
26233759 GAAATAAAATTCGC
130 GAAATAAGATTCGC
* *
26233773 TGTCTTCAGTCTGCTCCGCTTCAACTTTAGGGAGATAAGGCTGGTGGCTTCAATCTGCTCCACTG
1 TGTCTTCAGTCTGCTCCGCTGCAACTTCAGGGAGATAAGGCTGGTGGCTTCAATCTGCTCCACTG
* ** * * * * * * *
26233838 TAACTTCTGGAAGATGAGATCCGCCATAACTCGTAGCTTCAATCTATTCCACTGCAACATCGGGG
66 CAACTTCAAGAAGATAAGATCCGCCATAATTTGTAGCTTTAATCTGTTCCACTGCAACGTCAGGG
* *
26233903 AAATAAGATTTGT
131 AAATAAGATTCGC
* * *
26233916 TGTCTTTAGTCTGCTCCGCTGCAACTTCAGAGAGATAAGGCTAGTGGCTTCAATCTGCTCCACTG
1 TGTCTTCAGTCTGCTCCGCTGCAACTTCAGGGAGATAAGGCTGGTGGCTTCAATCTGCTCCACTG
* *
26233981 CAACTTCAAGAAAATAAGATCCGCCATAATTTGTAGCTTTAATCTGTTCCACTGCAACGTCAAGG
66 CAACTTCAAGAAGATAAGATCCGCCATAATTTGTAGCTTTAATCTGTTCCACTGCAACGTCAGGG
*
26234046 AAATAAGATTCAC
131 AAATAAGATTCGC
* * * *
26234059 TGTCTTCAGTCTGCTCCACTACAACTTCAGGAAGATAAGGCTGGTGGCTTCTATCTGCTCCACTG
1 TGTCTTCAGTCTGCTCCGCTGCAACTTCAGGGAGATAAGGCTGGTGGCTTCAATCTGCTCCACTG
* * * ** *
26234124 CAACTTCAAGAAGATAAGATCC-ACAGTAATTTTTACCTTTAATCCATTCCACTGTAACGTCAGG
66 CAACTTCAAGAAGATAAGATCCGCCA-TAATTTGTAGCTTTAATCTGTTCCACTGCAACGTCAGG
*
26234188 GAAATAAGATTCAC
130 GAAATAAGATTCGC
* * * * *
26234202 TGTCTTCAGTCTACTCCGCTGCAACTTTAGGGAGATAAGGCTGATGGCTTCAATCTGCTCTATTG
1 TGTCTTCAGTCTGCTCCGCTGCAACTTCAGGGAGATAAGGCTGGTGGCTTCAATCTGCTCCACTG
* * * * *
26234267 TAACTTCAAGAAGATAAGATCTGCCATAATTTGTAGCTTTAATCCGTTCCACTGCAATGTTAGGG
66 CAACTTCAAGAAGATAAGATCCGCCATAATTTGTAGCTTTAATCTGTTCCACTGCAACGTCAGGG
*
26234332 AAATAAGATTCGT
131 AAATAAGATTCGC
* * * *
26234345 TGTCTTCAATCTGCTCCCCTGCAACTTCAGAGAGATAAGGCTGGTGGCTTCAATCTGCTCTACTG
1 TGTCTTCAGTCTGCTCCGCTGCAACTTCAGGGAGATAAGGCTGGTGGCTTCAATCTGCTCCACTG
* *
26234410 CAACTTCAGGAAGATAAGATCTGCCAT
66 CAACTTCAAGAAGATAAGATCCGCCAT
26234437 CTTAGATCTA
Statistics
Matches: 574, Mismatches: 87, Indels: 6
0.86 0.13 0.01
Matches are distributed among these distances:
142 2 0.00
143 569 0.99
144 3 0.01
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (143 bp):
TGTCTTCAGTCTGCTCCGCTGCAACTTCAGGGAGATAAGGCTGGTGGCTTCAATCTGCTCCACTG
CAACTTCAAGAAGATAAGATCCGCCATAATTTGTAGCTTTAATCTGTTCCACTGCAACGTCAGGG
AAATAAGATTCGC
Found at i:26233982 original size:44 final size:45
Alignment explanation
Indices: 26233925--26234141 Score: 163
Period size: 44 Copynumber: 4.7 Consensus size: 45
26233915 TTGTCTTTAG
*
26233925 TCTGCTCCGCTGCAACTTC-AGAGAGATAAGGCT-AGTGGCTTCAA
1 TCTGCTCCACTGCAACTTCAAGA-AGATAAGGCTAAGTGGCTTCAA
* * *
26233969 TCTGCTCCACTGCAACTTCAAGAAAATAAGATCCGCCATAATTTGTAGCTTTAA
1 TCTGCTCCACTGCAACTTCAAGAAGATAAG----G-C-TAA---GTGGCTTCAA
* * ** * * * *
26234023 TCTGTTCCACTGCAACGTCAAGGAA-ATAAGATTCACTGTCTTCAG
1 TCTGCTCCACTGCAACTTCAA-GAAGATAAGGCTAAGTGGCTTCAA
* * * *
26234068 TCTGCTCCACTACAACTTCAGGAAGATAAGGCT-GGTGGCTTCTA
1 TCTGCTCCACTGCAACTTCAAGAAGATAAGGCTAAGTGGCTTCAA
26234112 TCTGCTCCACTGCAACTTCAAGAAGATAAG
1 TCTGCTCCACTGCAACTTCAAGAAGATAAG
26234142 ATCCACAGTA
Statistics
Matches: 133, Mismatches: 27, Indels: 26
0.72 0.15 0.14
Matches are distributed among these distances:
44 61 0.46
45 31 0.23
48 3 0.02
49 1 0.01
50 1 0.01
51 1 0.01
54 32 0.24
55 3 0.02
ACGTcount: A:0.29, C:0.25, G:0.19, T:0.27
Consensus pattern (45 bp):
TCTGCTCCACTGCAACTTCAAGAAGATAAGGCTAAGTGGCTTCAA
Found at i:26234429 original size:429 final size:428
Alignment explanation
Indices: 26233630--26234436 Score: 1170
Period size: 429 Copynumber: 1.9 Consensus size: 428
26233620 TGGGATTTGT
* *
26233630 TGTCTTCAGTCTGCTCCACTGCAACTTCAAGGAGATAAGGCTGGTGGCTTCAATCTACTCCATTG
1 TGTCTTCAGTCTGCTCCACTACAACTTCAAGGAGATAAGGCTGGTGGCTTCAATCTACTCCACTG
* * * * **
26233695 CAACTTTAGGAAGATAAGATTTGCCATAATTTATAGCTTTAATATGTTCCACTGCAACGCTAGGG
66 CAACTTCAAGAAGATAAGA-TTCCCATAATTTATACCTTTAATACATTCCACTGCAACGCTAGGG
* * * *
26233760 AAATAAAATTCGCTGTCTTCAGTCTGCTCCGCTTCAACTTTAGGGAGATAAGGCTGGTGGCTTCA
130 AAATAAAATTCACTGTCTTCAGTCTACTCCGCTGCAACTTTAGGGAGATAAGGCTGATGGCTTCA
** * *
26233825 ATCTGCTCCACTGTAACTTCTGGAAGATGAGATCCGCCATAACTCGTAGCTTCAATCTATTCCAC
195 ATCTGCTCCACTGTAACTTCAAGAAGATAAGATCCGCCATAACTCGTAGCTTCAATCCATTCCAC
* * * * *
26233890 TGCAACATCGGGGAAATAAGATTTGTTGTCTTTAGTCTGCTCCGCTGCAACTTCAGAGAGATAAG
260 TGCAACATCAGGGAAATAAGATTCGTTGTCTTCAATCTGCTCCCCTGCAACTTCAGAGAGATAAG
26233955 GCTAGTGGCTTCAATCTGCTCCACTGCAACTTCAAGAAAATAAGATCCGCCATAATTTGTAGCTT
325 GCTAGTGGCTTCAATCTGCTCCACTGCAACTTCAAGAAAATAAGATCCGCCATAATTTGTAGCTT
26234020 TAATCTGTTCCACTGCAACGTCAAGGAAATAAGATTCAC
390 TAATCTGTTCCACTGCAACGTCAAGGAAATAAGATTCAC
* *
26234059 TGTCTTCAGTCTGCTCCACTACAACTTC-AGGAAGATAAGGCTGGTGGCTTCTATCTGCTCCACT
1 TGTCTTCAGTCTGCTCCACTACAACTTCAAGG-AGATAAGGCTGGTGGCTTCAATCTACTCCACT
* * *
26234123 GCAACTTCAAGAAGATAAGA-TCCACAGTAATTTTTACCTTTAATCCATTCCACTGTAACG-TCA
65 GCAACTTCAAGAAGATAAGATTCC-CA-TAATTTATACCTTTAATACATTCCACTGCAACGCT-A
*
26234186 GGGAAATAAGATTCACTGTCTTCAGTCTACTCCGCTGCAACTTTAGGGAGATAAGGCTGATGGCT
127 GGGAAATAAAATTCACTGTCTTCAGTCTACTCCGCTGCAACTTTAGGGAGATAAGGCTGATGGCT
* * * * * * *
26234251 TCAATCTGCTCTATTGTAACTTCAAGAAGATAAGATCTGCCATAATTTGTAGCTTTAATCCGTTC
192 TCAATCTGCTCCACTGTAACTTCAAGAAGATAAGATCCGCCATAACTCGTAGCTTCAATCCATTC
** *
26234316 CACTGCAATGTTAGGGAAATAAGATTCGTTGTCTTCAATCTGCTCCCCTGCAACTTCAGAGAGAT
257 CACTGCAACATCAGGGAAATAAGATTCGTTGTCTTCAATCTGCTCCCCTGCAACTTCAGAGAGAT
* * * * *
26234381 AAGGCTGGTGGCTTCAATCTGCTCTACTGCAACTTCAGGAAGATAAGATCTGCCAT
322 AAGGCTAGTGGCTTCAATCTGCTCCACTGCAACTTCAAGAAAATAAGATCCGCCAT
26234437 CTTAGATCTA
Statistics
Matches: 332, Mismatches: 42, Indels: 8
0.87 0.11 0.02
Matches are distributed among these distances:
427 2 0.01
428 6 0.02
429 324 0.98
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (428 bp):
TGTCTTCAGTCTGCTCCACTACAACTTCAAGGAGATAAGGCTGGTGGCTTCAATCTACTCCACTG
CAACTTCAAGAAGATAAGATTCCCATAATTTATACCTTTAATACATTCCACTGCAACGCTAGGGA
AATAAAATTCACTGTCTTCAGTCTACTCCGCTGCAACTTTAGGGAGATAAGGCTGATGGCTTCAA
TCTGCTCCACTGTAACTTCAAGAAGATAAGATCCGCCATAACTCGTAGCTTCAATCCATTCCACT
GCAACATCAGGGAAATAAGATTCGTTGTCTTCAATCTGCTCCCCTGCAACTTCAGAGAGATAAGG
CTAGTGGCTTCAATCTGCTCCACTGCAACTTCAAGAAAATAAGATCCGCCATAATTTGTAGCTTT
AATCTGTTCCACTGCAACGTCAAGGAAATAAGATTCAC
Found at i:26235574 original size:5 final size:5
Alignment explanation
Indices: 26235564--26235617 Score: 58
Period size: 5 Copynumber: 10.8 Consensus size: 5
26235554 CTTGGCCTCT
* *
26235564 TTTTC TTTTC TTTT- TCTT- TTTTC TTTTC TTTTC TTTTTTC TTTTC TTTTA
1 TTTTC TTTTC TTTTC TTTTC TTTTC TTTTC TTTTC --TTTTC TTTTC TTTTC
26235614 TTTT
1 TTTT
26235618 TTGTTTTTGT
Statistics
Matches: 43, Mismatches: 3, Indels: 6
0.83 0.06 0.12
Matches are distributed among these distances:
4 6 0.14
5 32 0.74
7 5 0.12
ACGTcount: A:0.02, C:0.15, G:0.00, T:0.83
Consensus pattern (5 bp):
TTTTC
Found at i:26235584 original size:12 final size:12
Alignment explanation
Indices: 26235561--26235625 Score: 59
Period size: 12 Copynumber: 5.6 Consensus size: 12
26235551 CGCCTTGGCC
26235561 TCTTTTTC-TTT
1 TCTTTTTCTTTT
26235572 TCTTTTTCTTTT
1 TCTTTTTCTTTT
26235584 T-TCTTTTC-TTT
1 TCT-TTTTCTTTT
26235595 TCTTTTT-TCTTT
1 TCTTTTTCT-TTT
26235607 TCTTTTAT-TTTT
1 TCTTTT-TCTTTT
*
26235619 TGTTTTT
1 TCTTTTT
26235626 GTAACACCCC
Statistics
Matches: 47, Mismatches: 1, Indels: 12
0.78 0.02 0.20
Matches are distributed among these distances:
11 18 0.38
12 27 0.57
13 2 0.04
ACGTcount: A:0.02, C:0.14, G:0.02, T:0.83
Consensus pattern (12 bp):
TCTTTTTCTTTT
Found at i:26235617 original size:17 final size:17
Alignment explanation
Indices: 26235563--26235624 Score: 97
Period size: 17 Copynumber: 3.6 Consensus size: 17
26235553 CCTTGGCCTC
26235563 TTTTTCTTTTCTTTTTCT
1 TTTTTCTTTTC-TTTTCT
26235581 TTTTTCTTTTCTTTTCT
1 TTTTTCTTTTCTTTTCT
*
26235598 TTTTTCTTTTCTTTTAT
1 TTTTTCTTTTCTTTTCT
*
26235615 TTTTTGTTTT
1 TTTTTCTTTT
26235625 TGTAACACCC
Statistics
Matches: 42, Mismatches: 2, Indels: 1
0.93 0.04 0.02
Matches are distributed among these distances:
17 31 0.74
18 11 0.26
ACGTcount: A:0.02, C:0.13, G:0.02, T:0.84
Consensus pattern (17 bp):
TTTTTCTTTTCTTTTCT
Found at i:26240929 original size:43 final size:42
Alignment explanation
Indices: 26240874--26241045 Score: 161
Period size: 43 Copynumber: 4.0 Consensus size: 42
26240864 ATATCGTACA
* *
26240874 ATGCCAAC-GTCCCAGACGTGGTCTTACATGCTATCTCATATCG
1 ATGCC-ACTGTCCCAGACATGGTCTTACATG-TATCACATATCG
* * * *
26240917 ATGCCACTGTCCCAGACAGGGTCTTTACACGAATCAAATA-CG
1 ATGCCACTGTCCCAGACATGGTC-TTACATGTATCACATATCG
* **
26240959 GTGATGA-TGTCCCAGACATGGTCTTACATGTAATCACATATCG
1 ATG-CCACTGTCCCAGACATGGTCTTACATGT-ATCACATATCG
* * *
26241002 ATGCCAATGTCCCAGACATGGTCTTACATGAGAACACATATCG
1 ATGCCACTGTCCCAGACATGGTCTTACATG-TATCACATATCG
26241045 A
1 A
26241046 AACCCTATGT
Statistics
Matches: 104, Mismatches: 18, Indels: 14
0.76 0.13 0.10
Matches are distributed among these distances:
41 6 0.06
42 29 0.28
43 63 0.61
44 6 0.06
ACGTcount: A:0.29, C:0.26, G:0.19, T:0.26
Consensus pattern (42 bp):
ATGCCACTGTCCCAGACATGGTCTTACATGTATCACATATCG
Found at i:26241063 original size:43 final size:42
Alignment explanation
Indices: 26240965--26241056 Score: 105
Period size: 43 Copynumber: 2.1 Consensus size: 42
26240955 TACGGTGATG
* **
26240965 ATGTCCCAGACATGGTCTTACATGTAATCACATATCGATGCCA
1 ATGT-CCAGACATGGTCTTACATGTAAACACATATCGAACCCA
*
26241008 ATGTCCCAGACATGGTCTTACATG-AGAACACATATCGAAACCCT
1 ATGT-CCAGACATGGTCTTACATGTA-AACACATATCG-AACCCA
26241052 ATGTC
1 ATGTC
26241057 ATGACATATG
Statistics
Matches: 43, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
42 1 0.02
43 35 0.81
44 7 0.16
ACGTcount: A:0.32, C:0.26, G:0.16, T:0.26
Consensus pattern (42 bp):
ATGTCCAGACATGGTCTTACATGTAAACACATATCGAACCCA
Found at i:26242311 original size:19 final size:19
Alignment explanation
Indices: 26242287--26242336 Score: 73
Period size: 19 Copynumber: 2.6 Consensus size: 19
26242277 CTATTACAGT
26242287 TTTTCTTTTTTTATTTTTC
1 TTTTCTTTTTTTATTTTTC
*
26242306 TTTTCTTTTTTTCTTTTTC
1 TTTTCTTTTTTTATTTTTC
* *
26242325 TCTTATTTTTTT
1 TTTTCTTTTTTT
26242337 TAAGTGAAGT
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 28 1.00
ACGTcount: A:0.04, C:0.12, G:0.00, T:0.84
Consensus pattern (19 bp):
TTTTCTTTTTTTATTTTTC
Found at i:26242324 original size:14 final size:15
Alignment explanation
Indices: 26242286--26242325 Score: 59
Period size: 14 Copynumber: 2.9 Consensus size: 15
26242276 GCTATTACAG
26242286 TTTTTCTTTTT-TTA
1 TTTTTCTTTTTCTTA
26242300 TTTTTC-TTTTCTT-
1 TTTTTCTTTTTCTTA
26242313 TTTTTCTTTTTCT
1 TTTTTCTTTTTCT
26242326 CTTATTTTTT
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
13 10 0.42
14 14 0.58
ACGTcount: A:0.03, C:0.12, G:0.00, T:0.85
Consensus pattern (15 bp):
TTTTTCTTTTTCTTA
Found at i:26245363 original size:28 final size:28
Alignment explanation
Indices: 26245318--26245418 Score: 96
Period size: 28 Copynumber: 3.6 Consensus size: 28
26245308 GCCCCTTTAA
* * *
26245318 GCCCAATCTCATTCATATGGCCCAT-TG
1 GCCCAACCACATTCATATGGCCCATCAG
* *
26245345 GCCACAACCACATTTATATGGTCCATCAG
1 GCC-CAACCACATTCATATGGCCCATCAG
* * *
26245374 GCCCAATCACATTCATATGGTCCACCAG
1 GCCCAACCACATTCATATGGCCCATCAG
* *
26245402 GCCCAATCATATTCATA
1 GCCCAACCACATTCATA
26245419 GTCATGCAAT
Statistics
Matches: 63, Mismatches: 9, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
27 3 0.05
28 56 0.89
29 4 0.06
ACGTcount: A:0.29, C:0.33, G:0.13, T:0.26
Consensus pattern (28 bp):
GCCCAACCACATTCATATGGCCCATCAG
Found at i:26245657 original size:16 final size:16
Alignment explanation
Indices: 26245636--26245666 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
26245626 AAACTTCTGG
26245636 CTTTTCGGCATTTTGA
1 CTTTTCGGCATTTTGA
26245652 CTTTTCGGCATTTTG
1 CTTTTCGGCATTTTG
26245667 GGATTTACCG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.10, C:0.19, G:0.19, T:0.52
Consensus pattern (16 bp):
CTTTTCGGCATTTTGA
Found at i:26260074 original size:3 final size:3
Alignment explanation
Indices: 26260068--26260102 Score: 70
Period size: 3 Copynumber: 11.7 Consensus size: 3
26260058 AATGATGATG
26260068 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA AT
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA AT
26260103 GGTAAAATAT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 32 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
ATA
Found at i:26263121 original size:20 final size:20
Alignment explanation
Indices: 26263098--26263151 Score: 72
Period size: 20 Copynumber: 2.7 Consensus size: 20
26263088 TAAAATTTTG
26263098 AATCTATCGATACTCAACAA
1 AATCTATCGATACTCAACAA
**
26263118 AATCTATCGATACTTGACAA
1 AATCTATCGATACTCAACAA
**
26263138 AAAGTATCGATACT
1 AATCTATCGATACT
26263152 AGATTGGTAC
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 30 1.00
ACGTcount: A:0.43, C:0.20, G:0.09, T:0.28
Consensus pattern (20 bp):
AATCTATCGATACTCAACAA
Found at i:26266284 original size:20 final size:20
Alignment explanation
Indices: 26266261--26266298 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
26266251 TTATACAAAT
26266261 AAAATAATAATTATATAATA
1 AAAATAATAATTATATAATA
**
26266281 AAAATAATTTTTATATAA
1 AAAATAATAATTATATAA
26266299 ATATATTTAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (20 bp):
AAAATAATAATTATATAATA
Found at i:26266555 original size:12 final size:12
Alignment explanation
Indices: 26266540--26266564 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
26266530 ATATTTATTA
26266540 ATTAAAAATTTT
1 ATTAAAAATTTT
26266552 ATTAAAAATTTT
1 ATTAAAAATTTT
26266564 A
1 A
26266565 AAAAAATTAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (12 bp):
ATTAAAAATTTT
Found at i:26269328 original size:18 final size:18
Alignment explanation
Indices: 26269305--26269339 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
26269295 GAAAACACCA
26269305 TCATGATCAAGTTCATGG
1 TCATGATCAAGTTCATGG
*
26269323 TCATGATCATGTTCATG
1 TCATGATCAAGTTCATG
26269340 ATGTGATGAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.26, C:0.17, G:0.20, T:0.37
Consensus pattern (18 bp):
TCATGATCAAGTTCATGG
Found at i:26271514 original size:27 final size:27
Alignment explanation
Indices: 26271484--26271558 Score: 78
Period size: 28 Copynumber: 2.7 Consensus size: 27
26271474 ATTTTTTATA
* *
26271484 TAATTTTTTTATCATTTTTAAAATTTT
1 TAATTTTTTTATCATTTTTAAAATCTC
* *
26271511 TAATTTTTTTACCATCTTTTATAATCTC
1 TAATTTTTTTATCAT-TTTTAAAATCTC
* *
26271539 AAATATTTTTTATGATTTTT
1 TAAT-TTTTTTATCATTTTT
26271559 TTTAAAAAAT
Statistics
Matches: 39, Mismatches: 7, Indels: 3
0.80 0.14 0.06
Matches are distributed among these distances:
27 14 0.36
28 16 0.41
29 9 0.23
ACGTcount: A:0.28, C:0.08, G:0.01, T:0.63
Consensus pattern (27 bp):
TAATTTTTTTATCATTTTTAAAATCTC
Found at i:26277923 original size:12 final size:12
Alignment explanation
Indices: 26277906--26277932 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
26277896 ATCGAAATCT
26277906 AAGCTAAAGTTG
1 AAGCTAAAGTTG
26277918 AAGCTAAAGTTG
1 AAGCTAAAGTTG
26277930 AAG
1 AAG
26277933 ATGACATTGA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.44, C:0.07, G:0.26, T:0.22
Consensus pattern (12 bp):
AAGCTAAAGTTG
Found at i:26279177 original size:24 final size:23
Alignment explanation
Indices: 26279131--26279186 Score: 62
Period size: 23 Copynumber: 2.5 Consensus size: 23
26279121 TTGGTTATGG
*
26279131 TAAAGGTTAAATTAGTAATTTAA
1 TAAAGGTTAAAATAGTAATTTAA
* *
26279154 TAAATGTTAAAATAGT-A-TTAT
1 TAAAGGTTAAAATAGTAATTTAA
*
26279175 TAAAGGTAAAAA
1 TAAAGGTTAAAA
26279187 CATTAAAACA
Statistics
Matches: 28, Mismatches: 5, Indels: 2
0.80 0.14 0.06
Matches are distributed among these distances:
21 13 0.46
22 1 0.04
23 14 0.50
ACGTcount: A:0.52, C:0.00, G:0.12, T:0.36
Consensus pattern (23 bp):
TAAAGGTTAAAATAGTAATTTAA
Found at i:26284636 original size:24 final size:24
Alignment explanation
Indices: 26284604--26284655 Score: 104
Period size: 24 Copynumber: 2.2 Consensus size: 24
26284594 TGAGTTACAT
26284604 GGCCAATCACACGCCTTGCCACAC
1 GGCCAATCACACGCCTTGCCACAC
26284628 GGCCAATCACACGCCTTGCCACAC
1 GGCCAATCACACGCCTTGCCACAC
26284652 GGCC
1 GGCC
26284656 GTGTGGCATC
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 28 1.00
ACGTcount: A:0.23, C:0.46, G:0.19, T:0.12
Consensus pattern (24 bp):
GGCCAATCACACGCCTTGCCACAC
Found at i:26287186 original size:33 final size:32
Alignment explanation
Indices: 26287147--26287284 Score: 102
Period size: 33 Copynumber: 4.3 Consensus size: 32
26287137 AAGGGTGGTA
* *
26287147 TTGAAAAGGAAAGGTATACTTTGTGTATACCAC
1 TTGAAAAGGAAAAGTACACTTTGTGT-TACCAC
* *
26287180 TTGAAAATGAAAAGTACACTATGTG-TA-CAC
1 TTGAAAAGGAAAAGTACACTTTGTGTTACCAC
** * * *
26287210 TTGAAAAGGTTATGTACACTTTGTGTGTACAAA
1 TTGAAAAGGAAAAGTACACTTTGTGT-TACCAC
** * *
26287243 TTGAAAAGGGTATGTACACTTCATGTG-TATCAC
1 TTGAAAAGGAAAAGTACACTT--TGTGTTACCAC
26287276 TTGAAAAGG
1 TTGAAAAGG
26287285 GAATATGCAC
Statistics
Matches: 85, Mismatches: 15, Indels: 10
0.77 0.14 0.09
Matches are distributed among these distances:
30 23 0.27
31 2 0.02
32 2 0.02
33 54 0.64
35 4 0.05
ACGTcount: A:0.36, C:0.12, G:0.21, T:0.31
Consensus pattern (32 bp):
TTGAAAAGGAAAAGTACACTTTGTGTTACCAC
Found at i:26291734 original size:69 final size:69
Alignment explanation
Indices: 26291653--26291844 Score: 203
Period size: 70 Copynumber: 2.8 Consensus size: 69
26291643 AATTGATGAG
* * *
26291653 TTGTTATATTAAAAATGTCTTCATTTACGTTCGA-TTTAAATGCTTAATGTGTTGCTGT-AAAGT
1 TTGTTATCTTAAAAATGT-TTCATTTACGTTCAATTTTAAATGCTTAATGTGCTGCTGTAAAAG-
26291716 GCTAAT
64 GCTAAT
* * * *
26291722 TTGTTATCTTAAAAAAATGTTTCACTCATGTT-AATTTTAGATGCTTAATGTGCTGCTGTAAAAG
1 TTGTTATCTT--AAAAATGTTTCATTTACGTTCAATTTTAAATGCTTAATGTGCTGCTGTAAAAG
* *
26291786 GTTGAT
64 GCTAAT
* * *
26291792 TTGTTGTCTTGAAAATGTGTTCATTTACG-TCCATTTTAAATGCTTAATGTGCT
1 TTGTTATCTTAAAAATGT-TTCATTTACGTTCAATTTTAAATGCTTAATGTGCT
26291845 TTCCAAAAAT
Statistics
Matches: 101, Mismatches: 16, Indels: 12
0.78 0.12 0.09
Matches are distributed among these distances:
68 8 0.08
69 37 0.37
70 44 0.44
71 12 0.12
ACGTcount: A:0.28, C:0.11, G:0.17, T:0.45
Consensus pattern (69 bp):
TTGTTATCTTAAAAATGTTTCATTTACGTTCAATTTTAAATGCTTAATGTGCTGCTGTAAAAGGC
TAAT
Found at i:26292887 original size:64 final size:66
Alignment explanation
Indices: 26292809--26292935 Score: 177
Period size: 67 Copynumber: 1.9 Consensus size: 66
26292799 CATTATGATA
* * * *
26292809 TAGCTAGGTCGCATGGGTGATACTA-TG-TGTACACCATGTAGACAAGAGAGCTACGGGATATAT
1 TAGCTAGGTCGCATGCGTGATACTAGTGAAGGACACCATGTAGACAAGAGAGCTACGAGATATAT
26292872 G
66 G
* *
26292873 TAGCTAGGTTGCATGCGTGATTCTAGGTGAAGGACACCATGTAGACAAGAGAGCTACGAGATA
1 TAGCTAGGTCGCATGCGTGATACTA-GTGAAGGACACCATGTAGACAAGAGAGCTACGAGATA
26292936 AACCGACTAG
Statistics
Matches: 54, Mismatches: 6, Indels: 3
0.86 0.10 0.05
Matches are distributed among these distances:
64 22 0.41
66 2 0.04
67 30 0.56
ACGTcount: A:0.31, C:0.16, G:0.30, T:0.24
Consensus pattern (66 bp):
TAGCTAGGTCGCATGCGTGATACTAGTGAAGGACACCATGTAGACAAGAGAGCTACGAGATATAT
G
Found at i:26293354 original size:40 final size:41
Alignment explanation
Indices: 26293299--26293587 Score: 200
Period size: 41 Copynumber: 7.1 Consensus size: 41
26293289 ACAAAAATTG
* * *
26293299 TAAAACACATAGCAATAGCGGCG-TTTTACCAAAAACGCCAC
1 TAAAA-ACAGAGCAATAGCGGCGCTTTTAGCAAAAACGCCGC
** *
26293340 TAAAAACAGAGCAATAGCGGCATTTTTTA-CTAAAACGCCGC
1 TAAAAACAGAGCAATAGCGGC-GCTTTTAGCAAAAACGCCGC
* * * * *
26293381 AAAAAATAGA-CCATAGCGGCGCTTTTTGC-AAAACGCCGT
1 TAAAAACAGAGCAATAGCGGCGCTTTTAGCAAAAACGCCGC
* * *
26293420 TAAAAACCAGA-CATTAGCGGTGCTTTT-GGAAAAACGCCGC
1 TAAAAA-CAGAGCAATAGCGGCGCTTTTAGCAAAAACGCCGC
* ** * *
26293460 TAAAAACCAGAGCATTAGCGGAACTTTT-GGAAAAACGCTGC
1 TAAAAA-CAGAGCAATAGCGGCGCTTTTAGCAAAAACGCCGC
* * ** *
26293501 TAAAAACCAGAGTATTAGCGGCGCTTTT-GGTAAAACGTCGC
1 TAAAAA-CAGAGCAATAGCGGCGCTTTTAGCAAAAACGCCGC
* * ** *
26293542 TAAAAACCAGAACATTAGCGGCGCTTTT-GGTAAAACGCCAC
1 TAAAAA-CAGAGCAATAGCGGCGCTTTTAGCAAAAACGCCGC
26293583 TAAAA
1 TAAAA
26293588 GTCATATAAC
Statistics
Matches: 211, Mismatches: 31, Indels: 12
0.83 0.12 0.05
Matches are distributed among these distances:
39 19 0.09
40 61 0.29
41 126 0.60
42 5 0.02
ACGTcount: A:0.38, C:0.22, G:0.20, T:0.20
Consensus pattern (41 bp):
TAAAAACAGAGCAATAGCGGCGCTTTTAGCAAAAACGCCGC
Found at i:26293375 original size:41 final size:37
Alignment explanation
Indices: 26293311--26293507 Score: 119
Period size: 40 Copynumber: 4.9 Consensus size: 37
26293301 AAACACATAG
* *
26293311 CAATAGCGGCGTTTTACCAAAAACGCCACTAAAAACAGA
1 CAATAGCGGCTTTTTA-C-AAAACGCCGCTAAAAACAGA
* *
26293350 GCAATAGCGGCATTTTTTACTAAAACGCCGCAAAAAATAGA
1 -CAATAGCGGC--TTTTTAC-AAAACGCCGCTAAAAACAGA
* * *
26293391 CCATAGCGGCGCTTTTTGCAAAACGCCGTTAAAAACCAGA
1 CAATAGC-G-GCTTTTTACAAAACGCCGCTAAAAA-CAGA
* *
26293431 CATTAGCGGTGCTTTTGGA-AAAACGCCGCTAAAAACCAGA
1 CAATAGC-G-GCTTTT-TACAAAACGCCGCTAAAAA-CAGA
* * *
26293471 GCATTAGCGGAACTTTTGGA-AAAACGCTGCTAAAAAC
1 -CAATAGCGG--CTTTT-TACAAAACGCCGCTAAAAAC
26293508 CAGAGTATTA
Statistics
Matches: 131, Mismatches: 17, Indels: 18
0.79 0.10 0.11
Matches are distributed among these distances:
39 15 0.11
40 60 0.46
41 49 0.37
42 7 0.05
ACGTcount: A:0.38, C:0.23, G:0.19, T:0.20
Consensus pattern (37 bp):
CAATAGCGGCTTTTTACAAAACGCCGCTAAAAACAGA
Found at i:26293508 original size:41 final size:41
Alignment explanation
Indices: 26293329--26293587 Score: 276
Period size: 41 Copynumber: 6.4 Consensus size: 41
26293319 GCGTTTTACC
* * * **
26293329 AAAAACGCCACTAAAAA-CAGAGCAATAGCGGC-ATTTTTT
1 AAAAACGCCGCTAAAAACCAGAGCATTAGCGGCGCTTTTGG
** * *
26293368 ACTAAAACGCCGC-AAAAAATAGACCA-TAGCGGCGCTTTTTG
1 A--AAAACGCCGCTAAAAACCAGAGCATTAGCGGCGCTTTTGG
* * *
26293409 CAAAACGCCGTTAAAAACCAGA-CATTAGCGGTGCTTTTGG
1 AAAAACGCCGCTAAAAACCAGAGCATTAGCGGCGCTTTTGG
**
26293449 AAAAACGCCGCTAAAAACCAGAGCATTAGCGGAACTTTTGG
1 AAAAACGCCGCTAAAAACCAGAGCATTAGCGGCGCTTTTGG
* *
26293490 AAAAACGCTGCTAAAAACCAGAGTATTAGCGGCGCTTTTGG
1 AAAAACGCCGCTAAAAACCAGAGCATTAGCGGCGCTTTTGG
* * *
26293531 TAAAACGTCGCTAAAAACCAGAACATTAGCGGCGCTTTTGG
1 AAAAACGCCGCTAAAAACCAGAGCATTAGCGGCGCTTTTGG
* *
26293572 TAAAACGCCACTAAAA
1 AAAAACGCCGCTAAAA
26293588 GTCATATAAC
Statistics
Matches: 187, Mismatches: 26, Indels: 12
0.83 0.12 0.05
Matches are distributed among these distances:
39 12 0.06
40 53 0.28
41 122 0.65
ACGTcount: A:0.38, C:0.22, G:0.20, T:0.20
Consensus pattern (41 bp):
AAAAACGCCGCTAAAAACCAGAGCATTAGCGGCGCTTTTGG
Found at i:26293776 original size:21 final size:21
Alignment explanation
Indices: 26293752--26293836 Score: 82
Period size: 21 Copynumber: 3.9 Consensus size: 21
26293742 CATTATAGTT
26293752 TATGGTTTATGGTTTAAGATA
1 TATGGTTTATGGTTTAAGATA
* *
26293773 TATGGTTTA-GGATTTAAGGTT
1 TATGGTTTATGG-TTTAAGATA
*
26293794 TATGAGTTAACTATAGTTTAAGATA
1 TATG-GTT---TATGGTTTAAGATA
*
26293819 TATGGTTTAGGGTTTAAG
1 TATGGTTTATGGTTTAAG
26293837 GTTTAGGAGT
Statistics
Matches: 51, Mismatches: 7, Indels: 12
0.73 0.10 0.17
Matches are distributed among these distances:
20 2 0.04
21 29 0.57
22 3 0.06
24 3 0.06
25 13 0.25
26 1 0.02
ACGTcount: A:0.29, C:0.01, G:0.25, T:0.45
Consensus pattern (21 bp):
TATGGTTTATGGTTTAAGATA
Found at i:26293815 original size:46 final size:46
Alignment explanation
Indices: 26293763--26293852 Score: 162
Period size: 46 Copynumber: 2.0 Consensus size: 46
26293753 ATGGTTTATG
*
26293763 GTTTAAGATATATGGTTTAGGATTTAAGGTTTATGAGTTAACTATA
1 GTTTAAGATATATGGTTTAGGATTTAAGGTTTAGGAGTTAACTATA
*
26293809 GTTTAAGATATATGGTTTAGGGTTTAAGGTTTAGGAGTTAACTA
1 GTTTAAGATATATGGTTTAGGATTTAAGGTTTAGGAGTTAACTA
26293853 GTATTTGAAG
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
46 42 1.00
ACGTcount: A:0.31, C:0.02, G:0.24, T:0.42
Consensus pattern (46 bp):
GTTTAAGATATATGGTTTAGGATTTAAGGTTTAGGAGTTAACTATA
Found at i:26294004 original size:7 final size:7
Alignment explanation
Indices: 26293879--26294007 Score: 68
Period size: 7 Copynumber: 18.1 Consensus size: 7
26293869 GATGAAGTAT
26293879 GGGTTTA
1 GGGTTTA
*
26293886 GGGATTA
1 GGGTTTA
* *
26293893 TGATTTA
1 GGGTTTA
26293900 GGGTTTAA
1 GGGTTT-A
26293908 GGG-TTA
1 GGGTTTA
26293914 GGG-TT-
1 GGGTTTA
26293919 GGAGTTTA
1 GG-GTTTA
* *
26293927 AGGTGTAA
1 GGGT-TTA
*
26293935 CGGTTTA
1 GGGTTTA
*
26293942 GGGTTAA
1 GGGTTTA
*
26293949 GGGTTAA
1 GGGTTTA
26293956 GGGTTTA
1 GGGTTTA
*
26293963 GAGTTTA
1 GGGTTTA
*
26293970 GTGTTTA
1 GGGTTTA
*
26293977 TGGG-ATA
1 -GGGTTTA
*
26293984 TGGGTTAA
1 -GGGTTTA
26293992 GAGGTTTA
1 G-GGTTTA
26294000 GGGTTTA
1 GGGTTTA
26294007 G
1 G
26294008 ATTAATTAGT
Statistics
Matches: 94, Mismatches: 20, Indels: 16
0.72 0.15 0.12
Matches are distributed among these distances:
5 2 0.02
6 7 0.07
7 66 0.70
8 19 0.20
ACGTcount: A:0.22, C:0.01, G:0.39, T:0.38
Consensus pattern (7 bp):
GGGTTTA
Found at i:26295307 original size:15 final size:15
Alignment explanation
Indices: 26295287--26295317 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
26295277 TTGAAGGTAA
26295287 CCTACTGGTTTTCTT
1 CCTACTGGTTTTCTT
26295302 CCTACTGGTTTTCTT
1 CCTACTGGTTTTCTT
26295317 C
1 C
26295318 TAATTCAAGG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.06, C:0.29, G:0.13, T:0.52
Consensus pattern (15 bp):
CCTACTGGTTTTCTT
Found at i:26296576 original size:23 final size:23
Alignment explanation
Indices: 26296531--26296576 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 23
26296521 GAAATTGAGA
**
26296531 TGTTAATTGAGGTGTATAAATGT
1 TGTTAATTGAAATGTATAAATGT
26296554 TGTTAATTGAAATGT-TAATATGT
1 TGTTAATTGAAATGTATAA-ATGT
26296577 GTGTGTGTGT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
22 3 0.15
23 17 0.85
ACGTcount: A:0.33, C:0.00, G:0.22, T:0.46
Consensus pattern (23 bp):
TGTTAATTGAAATGTATAAATGT
Found at i:26296981 original size:23 final size:23
Alignment explanation
Indices: 26296955--26297401 Score: 403
Period size: 23 Copynumber: 19.4 Consensus size: 23
26296945 AAATGTTGTT
26296955 AATTG-AGATGTTAAAGTGCTGCA
1 AATTGAAG-TGTTAAAGTGCTGCA
* * *
26296978 AATTAAAGTGTTTAAA-TGTTGTA
1 AATTGAAGTG-TTAAAGTGCTGCA
*
26297001 AATTGAACTGTTAAAGTGCTGCA
1 AATTGAAGTGTTAAAGTGCTGCA
*
26297024 AATTGAAGTGTTAAAGTGCTGTA
1 AATTGAAGTGTTAAAGTGCTGCA
* * *
26297047 AATTGGAGTGTTTAAGTACTGCA
1 AATTGAAGTGTTAAAGTGCTGCA
* *
26297070 AATTGAAGTGTT-TAGTTGCTGGA
1 AATTGAAGTGTTAAAG-TGCTGCA
* **
26297093 AATTG-AGATGTTTAAA-TGTTGTT
1 AATTGAAG-TG-TTAAAGTGCTGCA
*
26297116 AATTGAAATGTTAAAGTGCTGCA
1 AATTGAAGTGTTAAAGTGCTGCA
* *
26297139 AATTGAAGTGTTTTAA-TGCTGTA
1 AATTGAAGTG-TTAAAGTGCTGCA
26297162 AATTGAAGTGTTAAAGTGCTGCA
1 AATTGAAGTGTTAAAGTGCTGCA
* **
26297185 AATTGAAGTGGTTAAA-TGTTGTT
1 AATTGAAGT-GTTAAAGTGCTGCA
*
26297208 AATTGAAATGTTAAAGTGCTGCA
1 AATTGAAGTGTTAAAGTGCTGCA
* *
26297231 AATTGAAGTGTTTGAA-TGCTGTA
1 AATTGAAGTG-TTAAAGTGCTGCA
*
26297254 AATTGAAGTGCTTAAA-TGTTGCA
1 AATTGAAGTG-TTAAAGTGCTGCA
** **
26297277 AATTGAAGTGCTATAAA-TATTGTT
1 AATTGAAGTG-T-TAAAGTGCTGCA
*
26297301 AATTGAAATGTTAAAGTGCTGCA
1 AATTGAAGTGTTAAAGTGCTGCA
** * *
26297324 AATTGAAGTGTTTTACTGCTGTA
1 AATTGAAGTGTTAAAGTGCTGCA
26297347 AATTGAAGTGTTAAAGTGCTGCA
1 AATTGAAGTGTTAAAGTGCTGCA
* *
26297370 AATTGAAGTGTTTGAA-TGCTGTA
1 AATTGAAGTG-TTAAAGTGCTGCA
26297393 AATTGAAGT
1 AATTGAAGT
26297402 TGTGGATTAT
Statistics
Matches: 344, Mismatches: 63, Indels: 34
0.78 0.14 0.08
Matches are distributed among these distances:
22 28 0.08
23 270 0.78
24 45 0.13
25 1 0.00
ACGTcount: A:0.34, C:0.06, G:0.23, T:0.37
Consensus pattern (23 bp):
AATTGAAGTGTTAAAGTGCTGCA
Found at i:26297120 original size:92 final size:90
Alignment explanation
Indices: 26296971--26297399 Score: 493
Period size: 92 Copynumber: 4.7 Consensus size: 90
26296961 GATGTTAAAG
* * * * * * * ** *
26296971 TGCTGCAAATTAAAGTGTTTAAATGTTGTAAATTGAACTG-TTAAAGTGCTGCAAATTGAAGTGT
1 TGCTGTAAATTGAAGTGTTT-AGTGCTGCAAATTGAAGTGTTTAAA-TGTTGTTAATTGAAATGT
* *
26297035 TAAAGTGCTGTAAATTGGAGTGTTTAA
64 TAAAGTGCTGCAAATTGAAGTGTTTAA
* * *
26297062 GTACTGCAAATTGAAGTGTTTAGTTGCTGGAAATTG-AGATGTTTAAATGTTGTTAATTGAAATG
1 -TGCTGTAAATTGAAGTGTTTAG-TGCTGCAAATTGAAG-TGTTTAAATGTTGTTAATTGAAATG
26297126 TTAAAGTGCTGCAAATTGAAGTGTTTTAA
63 TTAAAGTGCTGCAAATTGAAGTG-TTTAA
* *
26297155 TGCTGTAAATTGAAGTGTTAAAGTGCTGCAAATTGAAGTGGTTAAATGTTGTTAATTGAAATGTT
1 TGCTGTAAATTGAAGTGTT-TAGTGCTGCAAATTGAAGTGTTTAAATGTTGTTAATTGAAATGTT
26297220 AAAGTGCTGCAAATTGAAGTGTTTGAA
65 AAAGTGCTGCAAATTGAAGTGTTT-AA
* * * * *
26297247 TGCTGTAAATTGAAGTGCTTAAATGTTGCAAATTGAAGTGCTATAAATATTGTTAATTGAAATGT
1 TGCTGTAAATTGAAGTG-TTTAGTGCTGCAAATTGAAGTG-TTTAAATGTTGTTAATTGAAATGT
*
26297312 TAAAGTGCTGCAAATTGAAGTGTTTTAC
64 TAAAGTGCTGCAAATTGAAGTG-TTTAA
* * * *
26297340 TGCTGTAAATTGAAGTGTTAAAGTGCTGCAAATTGAAGTGTTTGAATGCTGTAAATTGAA
1 TGCTGTAAATTGAAGTGTT-TAGTGCTGCAAATTGAAGTGTTTAAATGTTGTTAATTGAA
26297400 GTTGTGGATT
Statistics
Matches: 296, Mismatches: 30, Indels: 22
0.85 0.09 0.06
Matches are distributed among these distances:
91 5 0.02
92 193 0.65
93 95 0.32
94 3 0.01
ACGTcount: A:0.34, C:0.06, G:0.23, T:0.37
Consensus pattern (90 bp):
TGCTGTAAATTGAAGTGTTTAGTGCTGCAAATTGAAGTGTTTAAATGTTGTTAATTGAAATGTTA
AAGTGCTGCAAATTGAAGTGTTTAA
Found at i:26299295 original size:19 final size:19
Alignment explanation
Indices: 26299272--26299318 Score: 51
Period size: 19 Copynumber: 2.5 Consensus size: 19
26299262 ATTTAATCTA
*
26299272 ATTTTTATTATTTA-TTTT
1 ATTTTTATTATATATTTTT
* *
26299290 AGTTTTGATTCTATATTTTT
1 A-TTTTTATTATATATTTTT
26299310 ATTTTTATT
1 ATTTTTATT
26299319 TTAATTTGAT
Statistics
Matches: 23, Mismatches: 4, Indels: 3
0.77 0.13 0.10
Matches are distributed among these distances:
18 1 0.04
19 17 0.74
20 5 0.22
ACGTcount: A:0.21, C:0.02, G:0.04, T:0.72
Consensus pattern (19 bp):
ATTTTTATTATATATTTTT
Found at i:26299520 original size:43 final size:43
Alignment explanation
Indices: 26299454--26299602 Score: 244
Period size: 43 Copynumber: 3.5 Consensus size: 43
26299444 TTTTAAATTT
*
26299454 CATGACTTTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGC
1 CATGACCTTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGC
*
26299497 CATGACCTTTAGCGGCGTATGTGGGAAAAGCGCCGCTAAAGGC
1 CATGACCTTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGC
* * *
26299540 CATGACCTTTAGCGGCATTTGTGGTAAAAGCGTCGCTAAAGGC
1 CATGACCTTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGC
*
26299583 CATAACCTTTAGCGGCGTTT
1 CATGACCTTTAGCGGCGTTT
26299603 TTTTCAAATA
Statistics
Matches: 98, Mismatches: 8, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
43 98 1.00
ACGTcount: A:0.24, C:0.22, G:0.30, T:0.24
Consensus pattern (43 bp):
CATGACCTTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGC
Found at i:26301772 original size:40 final size:40
Alignment explanation
Indices: 26301728--26301919 Score: 226
Period size: 40 Copynumber: 4.8 Consensus size: 40
26301718 ATAACCACAA
* * *
26301728 GCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATAGCAACTC
*
26301768 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATAGCAACTC
* * *
26301808 GCACAAATGCCTTCGGGTCTTAGCCCGGATAAAATC-ACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGAT-ATAGCAACTC
* * * * *
26301848 GCATAAATGCCTTCGGGACTTAGCCCGGATAAAATC-ACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGAT-ATAGCAACTC
* *
26301888 GCATAAATGCCTTCGGGACTTAGCCCGGATAT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATAT
26301920 CATTCAAATG
Statistics
Matches: 142, Mismatches: 9, Indels: 3
0.92 0.06 0.02
Matches are distributed among these distances:
39 1 0.01
40 137 0.96
41 4 0.03
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGATATAGCAACTC
Found at i:26306823 original size:51 final size:51
Alignment explanation
Indices: 26306742--26306846 Score: 192
Period size: 51 Copynumber: 2.1 Consensus size: 51
26306732 ATCGAGGTCT
* *
26306742 ATAACAACAAAATTAACTCATTACTACACTACATTATACATTTCAAGTTTA
1 ATAAAAACAAAATTAACTCATTAATACACTACATTATACATTTCAAGTTTA
26306793 ATAAAAACAAAATTAACTCATTAATACACTACATTATACATTTCAAGTTTA
1 ATAAAAACAAAATTAACTCATTAATACACTACATTATACATTTCAAGTTTA
26306844 ATA
1 ATA
26306847 TCTTCCACTG
Statistics
Matches: 52, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
51 52 1.00
ACGTcount: A:0.48, C:0.17, G:0.02, T:0.33
Consensus pattern (51 bp):
ATAAAAACAAAATTAACTCATTAATACACTACATTATACATTTCAAGTTTA
Found at i:26318842 original size:32 final size:32
Alignment explanation
Indices: 26318806--26318888 Score: 85
Period size: 33 Copynumber: 2.5 Consensus size: 32
26318796 ACACTATATG
* * *
26318806 TGTACACTTGAAAAGGTTATCTACACTTTGTA
1 TGTACACTTGAAAAGGGTATCTACAATTCGTA
* * * *
26318838 TGTACAAATTGAAAAGGGTATGTTCAATTCGTG
1 TGTAC-ACTTGAAAAGGGTATCTACAATTCGTA
26318871 TGTATCACTTGAAAAGGG
1 TGTA-CACTTGAAAAGGG
26318889 AATGTGCACC
Statistics
Matches: 41, Mismatches: 8, Indels: 3
0.79 0.15 0.06
Matches are distributed among these distances:
32 5 0.12
33 35 0.85
34 1 0.02
ACGTcount: A:0.33, C:0.12, G:0.22, T:0.34
Consensus pattern (32 bp):
TGTACACTTGAAAAGGGTATCTACAATTCGTA
Found at i:26324812 original size:62 final size:62
Alignment explanation
Indices: 26324746--26324908 Score: 188
Period size: 62 Copynumber: 2.6 Consensus size: 62
26324736 TCGAAAACTT
26324746 AAACAGTGAGTTACACAGCCTGGACATACGCCCGTGTCCCTGA-CCGTGTGGTTTTATACCAC
1 AAACAGTGAGTTACACAGCCTGGACATA-GCCCGTGTCCCTGAGCCGTGTGGTTTTATACCAC
* * * *
26324808 AAACAGTGAGTTACACGGCCTAGGCACAT-GCCCGTGT-CCTTAGCTGTGTGGTTTTATGCCAC
1 AAACAGTGAGTTACACAGCCT-GG-ACATAGCCCGTGTCCCTGAGCCGTGTGGTTTTATACCAC
* * ** *
26324870 AAATAGTGAGTTACACTGCCCAGACACATGCCCGTGTCC
1 AAACAGTGAGTTACACAGCCTGGACATA-GCCCGTGTCC
26324909 GTTGCTTGTG
Statistics
Matches: 86, Mismatches: 9, Indels: 11
0.81 0.08 0.10
Matches are distributed among these distances:
60 3 0.03
61 5 0.06
62 71 0.83
63 3 0.03
64 4 0.05
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.25
Consensus pattern (62 bp):
AAACAGTGAGTTACACAGCCTGGACATAGCCCGTGTCCCTGAGCCGTGTGGTTTTATACCAC
Found at i:26328939 original size:21 final size:21
Alignment explanation
Indices: 26328913--26328952 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
26328903 TTTGACTTTT
26328913 TTCAGGATGAAAATACTGAAA
1 TTCAGGATGAAAATACTGAAA
*
26328934 TTCAGGATGAAAATTCTGA
1 TTCAGGATGAAAATACTGA
26328953 TGTGGGATAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.42, C:0.10, G:0.20, T:0.28
Consensus pattern (21 bp):
TTCAGGATGAAAATACTGAAA
Found at i:26330269 original size:31 final size:31
Alignment explanation
Indices: 26330234--26330299 Score: 78
Period size: 31 Copynumber: 2.1 Consensus size: 31
26330224 TTTCAATTTA
26330234 GTCACTAACATTTTAGATCATTTCTATTTTG
1 GTCACTAACATTTTAGATCATTTCTATTTTG
* ** ** *
26330265 GTCACTTATGTTTTAGATTGTTTCTGTTTTG
1 GTCACTAACATTTTAGATCATTTCTATTTTG
26330296 GTCA
1 GTCA
26330300 ATCTTGGTTA
Statistics
Matches: 29, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.20, C:0.14, G:0.15, T:0.52
Consensus pattern (31 bp):
GTCACTAACATTTTAGATCATTTCTATTTTG
Found at i:26338874 original size:40 final size:40
Alignment explanation
Indices: 26338810--26339011 Score: 234
Period size: 40 Copynumber: 5.1 Consensus size: 40
26338800 ACTATGATCT
* *
26338810 GAAGGCATTTGTGCGAGTTG-CTATATCTGGGCTAAGTCCC
1 GAAGGCATTTGTGCTAG-TGACTATATCCGGGCTAAGTCCC
* * *
26338850 GAAGGCATTTATGCTAGTGACTATATTCGGACTAAGTCCC
1 GAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTCCC
*
26338890 GAAGGCATTTGTGCTAGCGAC-ATATCCGGGCTAAGTCCC
1 GAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTCCC
* * *
26338929 GAAGGCATTTATGCTAGTGACAATATCCAGGCTAA-TACCC
1 GAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGT-CCC
* * *
26338969 GAAGGCATTTGTGCGAGTTG-CTATATCC-GGCTAAATCTC
1 GAAGGCATTTGTGCTAG-TGACTATATCCGGGCTAAGTCCC
26339008 GAAG
1 GAAG
26339012 ATACTTGGGT
Statistics
Matches: 141, Mismatches: 16, Indels: 11
0.84 0.10 0.07
Matches are distributed among these distances:
39 50 0.35
40 89 0.63
41 2 0.01
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.27
Consensus pattern (40 bp):
GAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTCCC
Found at i:26338931 original size:79 final size:80
Alignment explanation
Indices: 26338810--26339011 Score: 270
Period size: 79 Copynumber: 2.5 Consensus size: 80
26338800 ACTATGATCT
* * *
26338810 GAAGGCATTTGTGCGAGTTGCTATATCTGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACTATA
1 GAAGGCATTTGTGCGAGTCGCTATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACAATA
*
26338875 TTC-GGACTAAGT-CCC
66 TCCAGG-CTAA-TACCC
*
26338890 GAAGGCATTTGTGCTAG-CGAC-ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACAAT
1 GAAGGCATTTGTGCGAGTCG-CTATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACAAT
26338953 ATCCAGGCTAATACCC
65 ATCCAGGCTAATACCC
* * *
26338969 GAAGGCATTTGTGCGAGTTGCTATATCC-GGCTAAATCTCGAAG
1 GAAGGCATTTGTGCGAGTCGCTATATCCGGGCTAAGTCCCGAAG
26339012 ATACTTGGGT
Statistics
Matches: 108, Mismatches: 9, Indels: 11
0.84 0.07 0.09
Matches are distributed among these distances:
78 1 0.01
79 81 0.75
80 26 0.24
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.27
Consensus pattern (80 bp):
GAAGGCATTTGTGCGAGTCGCTATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACAATA
TCCAGGCTAATACCC
Found at i:26346948 original size:40 final size:40
Alignment explanation
Indices: 26346900--26347104 Score: 265
Period size: 40 Copynumber: 5.2 Consensus size: 40
26346890 GGACTAAGAT
* *
26346900 CCGAAGGCATTTGTGCGAGTTG-CTATATCTGGGCTAAGTC
1 CCGAAGGCATTTGTGCTAG-TGACTATATCCGGGCTAAGTC
* *
26346940 CTGAAGGCATTTATGCTAGTGACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
*
26346980 CCGAAGGCATTTGTGCTAGCGACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
* *
26347020 CCGAAGGCATTTATGCTAGTGACAATATCCGGGCTAA-TAC
1 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGT-C
* *
26347060 CCGAAGGCATTTGTGCGAGTTG-CTATATCC-GGCTAAATC
1 CCGAAGGCATTTGTGCTAG-TGACTATATCCGGGCTAAGTC
*
26347099 TCGAAG
1 CCGAAG
26347105 ATACTTGGGT
Statistics
Matches: 147, Mismatches: 14, Indels: 9
0.86 0.08 0.05
Matches are distributed among these distances:
39 15 0.10
40 130 0.88
41 2 0.01
ACGTcount: A:0.24, C:0.22, G:0.26, T:0.27
Consensus pattern (40 bp):
CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
Found at i:26347026 original size:80 final size:80
Alignment explanation
Indices: 26346900--26347104 Score: 299
Period size: 80 Copynumber: 2.6 Consensus size: 80
26346890 GGACTAAGAT
* * * *
26346900 CCGAAGGCATTTGTGCGAGTTGCTATATCTGGGCTAAGTCCTGAAGGCATTTATGCTAGTGACTA
1 CCGAAGGCATTTGTGCGAGTCGCTATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACAA
26346965 TATCCGGGCTAAGT-C
66 TATCCGGGCTAA-TAC
*
26346980 CCGAAGGCATTTGTGCTAG-CGACTATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACA
1 CCGAAGGCATTTGTGCGAGTCG-CTATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACA
26347044 ATATCCGGGCTAATAC
65 ATATCCGGGCTAATAC
* * *
26347060 CCGAAGGCATTTGTGCGAGTTGCTATATCC-GGCTAAATCTCGAAG
1 CCGAAGGCATTTGTGCGAGTCGCTATATCCGGGCTAAGTCCCGAAG
26347105 ATACTTGGGT
Statistics
Matches: 113, Mismatches: 9, Indels: 7
0.88 0.07 0.05
Matches are distributed among these distances:
79 15 0.13
80 97 0.86
81 1 0.01
ACGTcount: A:0.24, C:0.22, G:0.26, T:0.27
Consensus pattern (80 bp):
CCGAAGGCATTTGTGCGAGTCGCTATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACAA
TATCCGGGCTAATAC
Found at i:26348938 original size:46 final size:46
Alignment explanation
Indices: 26348871--26349045 Score: 196
Period size: 46 Copynumber: 3.8 Consensus size: 46
26348861 TGTAACCCGC
*
26348871 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCAT
*
26348917 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG--G-C--GTTCGCAT
* * * * *
26348967 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTTGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCAT
* *
26349010 CCATAGGTGAACTCAGACTCAACTCAACGAGTTCGG
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG
26349046 ATGCCCAAAT
Statistics
Matches: 107, Mismatches: 13, Indels: 18
0.78 0.09 0.13
Matches are distributed among these distances:
42 2 0.02
43 3 0.03
44 2 0.02
45 1 0.01
46 61 0.57
47 27 0.25
48 3 0.03
49 2 0.02
50 3 0.03
51 3 0.03
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.22
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCAT
Found at i:26348991 original size:93 final size:93
Alignment explanation
Indices: 26348879--26349050 Score: 290
Period size: 93 Copynumber: 1.8 Consensus size: 93
26348869 GCCCATAAGT
* * *
26348879 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
26348944 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
* * *
26348972 GAACTCGGACTCAACTCAACGAGTTTGGACATTCGCATCCATAGGTGAACTCAGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
26349037 CGAGTTCGGATGCC
66 CGAGTTCGGATGCC
26349051 CAAATATCCT
Statistics
Matches: 73, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:26351949 original size:35 final size:35
Alignment explanation
Indices: 26351903--26351974 Score: 126
Period size: 35 Copynumber: 2.1 Consensus size: 35
26351893 CATATATATA
*
26351903 ATTATAATGCATATAATATAAATTGTAAATACCAT
1 ATTATAATGCATATAATATAAATTATAAATACCAT
*
26351938 ATTATAATGCATATAATCTAAATTATAAATACCAT
1 ATTATAATGCATATAATATAAATTATAAATACCAT
26351973 AT
1 AT
26351975 GAACTAACCT
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
35 35 1.00
ACGTcount: A:0.49, C:0.10, G:0.04, T:0.38
Consensus pattern (35 bp):
ATTATAATGCATATAATATAAATTATAAATACCAT
Found at i:26353354 original size:59 final size:59
Alignment explanation
Indices: 26353262--26353375 Score: 201
Period size: 59 Copynumber: 1.9 Consensus size: 59
26353252 AAGCCGGTAA
* *
26353262 AGACCAGGACCTTTAGCGGTGCTTTTATAAAAAACGCCGCTAAATACCTGTACTTCTAG
1 AGACCAGGACCTTTAGCGGCGCTTTTATAAAAAACGCCGCTAAAGACCTGTACTTCTAG
*
26353321 AGACCAGGACCTTTAGCGGCGCTTTTATAAAAAACGCCGCTAGAGACCTGTACTT
1 AGACCAGGACCTTTAGCGGCGCTTTTATAAAAAACGCCGCTAAAGACCTGTACTT
26353376 TTAGTGACGC
Statistics
Matches: 52, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
59 52 1.00
ACGTcount: A:0.30, C:0.25, G:0.20, T:0.25
Consensus pattern (59 bp):
AGACCAGGACCTTTAGCGGCGCTTTTATAAAAAACGCCGCTAAAGACCTGTACTTCTAG
Found at i:26353379 original size:43 final size:43
Alignment explanation
Indices: 26353317--26353405 Score: 124
Period size: 43 Copynumber: 2.1 Consensus size: 43
26353307 ACCTGTACTT
*
26353317 CTAGAGACCAGGACCTTTAGCGGCGCTTTTATAAAAAACGCCG
1 CTAGAGACCAGGACCTTTAGCGACGCTTTTATAAAAAACGCCG
* * * * *
26353360 CTAGAGACCTGTACTTTTAGTGACGCTTTTTTAAAAAACGCCG
1 CTAGAGACCAGGACCTTTAGCGACGCTTTTATAAAAAACGCCG
26353403 CTA
1 CTA
26353406 ATTTACCCAG
Statistics
Matches: 40, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
43 40 1.00
ACGTcount: A:0.29, C:0.24, G:0.20, T:0.27
Consensus pattern (43 bp):
CTAGAGACCAGGACCTTTAGCGACGCTTTTATAAAAAACGCCG
Found at i:26354309 original size:18 final size:18
Alignment explanation
Indices: 26354277--26354314 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 18
26354267 TACAATATAG
26354277 TAGTAAAAATATTATTTAA
1 TAGTAAAAATATTA-TTAA
*
26354296 TAGTAAAAA-GTTATTAA
1 TAGTAAAAATATTATTAA
26354313 TA
1 TA
26354315 CTTGATAGAT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
17 6 0.33
18 3 0.17
19 9 0.50
ACGTcount: A:0.53, C:0.00, G:0.08, T:0.39
Consensus pattern (18 bp):
TAGTAAAAATATTATTAA
Found at i:26357243 original size:28 final size:29
Alignment explanation
Indices: 26357211--26357310 Score: 116
Period size: 28 Copynumber: 3.5 Consensus size: 29
26357201 ATAATAAGCC
* *
26357211 CGCACACTTAGTGCTTA-ATAGTCGAACT
1 CGCACACTTAGTGCTTATATAATCAAACT
26357239 CGCACACTTAGTGC-TATATAATCAAACT
1 CGCACACTTAGTGCTTATATAATCAAACT
* * *
26357267 CGCACACTTAGTGC-TATACAATTTGAAACC
1 CGCACACTTAGTGCTTATATAA--TCAAACT
26357297 CGCACACTTAGTGC
1 CGCACACTTAGTGC
26357311 CAATCTCATG
Statistics
Matches: 64, Mismatches: 5, Indels: 4
0.88 0.07 0.05
Matches are distributed among these distances:
27 2 0.03
28 43 0.67
30 19 0.30
ACGTcount: A:0.31, C:0.27, G:0.15, T:0.27
Consensus pattern (29 bp):
CGCACACTTAGTGCTTATATAATCAAACT
Found at i:26364056 original size:28 final size:28
Alignment explanation
Indices: 26364009--26364090 Score: 128
Period size: 28 Copynumber: 2.9 Consensus size: 28
26363999 ATGTCGTTGA
* * *
26364009 ATACTCAATGTCTTGCACACTAAGTGCC
1 ATACTCGATATCTCGCACACTAAGTGCC
*
26364037 ATACTCGATATCTCGTACACTAAGTGCC
1 ATACTCGATATCTCGCACACTAAGTGCC
26364065 ATACTCGATATCTCGCACACTAAGTG
1 ATACTCGATATCTCGCACACTAAGTG
26364091 TAATACATAT
Statistics
Matches: 49, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
28 49 1.00
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.28
Consensus pattern (28 bp):
ATACTCGATATCTCGCACACTAAGTGCC
Found at i:26364176 original size:40 final size:40
Alignment explanation
Indices: 26364077--26364221 Score: 166
Period size: 40 Copynumber: 3.6 Consensus size: 40
26364067 ACTCGATATC
** * * ** * *
26364077 TCGCACACTAAGTGTAATACATATCTAAAGCTATATCAAA
1 TCGCACACTAAGTGCCATATATAGCCGAAGCTATGTCGAA
* *
26364117 TCACACACTAAGTGTCATATATAGCCGAAGCTATGTCGAA
1 TCGCACACTAAGTGCCATATATAGCCGAAGCTATGTCGAA
* *
26364157 TCGCACACTAAGTGCCATATATAGCCGAAGCAATGTCGAG
1 TCGCACACTAAGTGCCATATATAGCCGAAGCTATGTCGAA
*
26364197 TCGCACACTAAGTGCCACA-ATAGCC
1 TCGCACACTAAGTGCCATATATAGCC
26364222 AATTTGTCGT
Statistics
Matches: 92, Mismatches: 13, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
39 6 0.07
40 86 0.93
ACGTcount: A:0.36, C:0.25, G:0.17, T:0.23
Consensus pattern (40 bp):
TCGCACACTAAGTGCCATATATAGCCGAAGCTATGTCGAA
Found at i:26372092 original size:93 final size:93
Alignment explanation
Indices: 26371985--26372155 Score: 288
Period size: 93 Copynumber: 1.8 Consensus size: 93
26371975 ACCCCTAATT
* *
26371985 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCAGACTCAACCCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACCCAA
26372050 CGAGTTCGGATGCCTAGTTACATTTCAC
66 CGAGTTCGGATGCCTAGTTACATTTCAC
* * * *
26372078 GAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACCCAA
26372143 CGAGTTCGGATGC
66 CGAGTTCGGATGC
26372156 TCAACCATCC
Statistics
Matches: 72, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACCCAA
CGAGTTCGGATGCCTAGTTACATTTCAC
Found at i:26372139 original size:46 final size:46
Alignment explanation
Indices: 26371984--26372152 Score: 182
Period size: 46 Copynumber: 3.7 Consensus size: 46
26371974 CACCCCTAAT
* * * *
26371984 TGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAG
1 TGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAG
* * * * * *
26372030 TGAACTCAGACTCAACCCAACGAGTTCGGATGCCTAGTTACAT--TTCA-
1 TGAACTCGGACTCAACTCAACGAGTTCGGA---C-ATTTGCATCCATAAG
*
26372077 CGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAG
1 TGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAG
26372123 TGAACTCGGACTCAACTCAACGAGTTCGGA
1 TGAACTCGGACTCAACTCAACGAGTTCGGA
26372153 TGCTCAACCA
Statistics
Matches: 98, Mismatches: 18, Indels: 14
0.75 0.14 0.11
Matches are distributed among these distances:
43 6 0.06
44 1 0.01
45 2 0.02
46 55 0.56
47 27 0.28
48 2 0.02
49 1 0.01
50 4 0.04
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (46 bp):
TGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAG
Found at i:26372612 original size:30 final size:30
Alignment explanation
Indices: 26372578--26372637 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
26372568 ATTTAATACG
26372578 AACTTTGGAAAAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
* * *
26372608 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
26372638 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.30, C:0.25, G:0.08, T:0.37
Consensus pattern (30 bp):
AACTTTGGAAAAATTACACTTTTGCCCCTA
Found at i:26382862 original size:37 final size:37
Alignment explanation
Indices: 26382803--26382948 Score: 247
Period size: 37 Copynumber: 3.9 Consensus size: 37
26382793 AGCTCAGACG
* * *
26382803 AAATCTCCACATGAAGTTATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
26382840 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
26382877 TAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
26382914 TAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
26382949 ATATATTTCC
Statistics
Matches: 105, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
37 105 1.00
ACGTcount: A:0.26, C:0.31, G:0.19, T:0.24
Consensus pattern (37 bp):
AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
Found at i:26383161 original size:46 final size:46
Alignment explanation
Indices: 26383093--26383468 Score: 138
Period size: 47 Copynumber: 7.9 Consensus size: 46
26383083 TATATATACA
* * * *
26383093 CATCTCGTACATATCTCACATTAGCCATTTGGCTTTACCACATATC
1 CATCTCATACACATCTCACATTAGCCATTCGGCCTTACCACATATC
* *
26383139 CATCTCATACACATTTCGCATTAGCCATTCGGCCTTACCACATAT-
1 CATCTCATACACATCTCACATTAGCCATTCGGCCTTACCACATATC
* * * *
26383184 -AT-TCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCTCATATATG
1 CATCTCA--TACACA-TC-TCACATTAGCCATTCGGCCTTA-C-CACATATC
* *
26383234 CATGT--T-CACATTCATCACATTGGCCATTCGGCCTTATCACACATA-C
1 CATCTCATACACA-TC-TCACATTAGCCATTCGGCCTTA-C-CACATATC
* * * *
26383280 GCATGT-TTACA-TTCATCACATTGGCCATTCGGCCTTATCACACATA-C
1 -CATCTCATACACATC-TCACATTAGCCATTCGGCCTTA-C-CACATATC
* * *
26383327 GCATGT--T-CACATTCATCACATTGGCCATTCGGCCTTATCACACATATA
1 -CATCTCATACACA-TC-TCACATTAGCCATTCGGCCTTA-C-CACATATC
* * * *
26383375 TATATACAGGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATA-C
1 CATCT-CA--TACACA-TC-TCACATTAGCCATTCGGCCTTA-C-CACATATC
* * *
26383427 GCATGT--T-CACATTCATCACATTGGCCATTCGGCCTTATCACA
1 -CATCTCATACACA-TC-TCACATTAGCCATTCGGCCTTACCACA
26383469 CATACGCATG
Statistics
Matches: 285, Mismatches: 23, Indels: 45
0.81 0.07 0.13
Matches are distributed among these distances:
43 3 0.01
44 2 0.01
45 11 0.04
46 41 0.14
47 170 0.60
48 4 0.01
49 8 0.03
51 2 0.01
52 2 0.01
53 42 0.15
ACGTcount: A:0.26, C:0.30, G:0.11, T:0.32
Consensus pattern (46 bp):
CATCTCATACACATCTCACATTAGCCATTCGGCCTTACCACATATC
Found at i:26383219 original size:47 final size:47
Alignment explanation
Indices: 26383157--26383585 Score: 639
Period size: 47 Copynumber: 9.1 Consensus size: 47
26383147 ACACATTTCG
* * * **
26383157 CATTAGCCATTCGGCCTTACCACATATATTCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
* * *
26383204 CATTGGCCATTCGGCCTTATCTCATATATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
*
26383251 CATTGGCCATTCGGCCTTATCACACATACGCATGTTTACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
26383298 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
** *
26383345 CATTGGCCATTCGGCCTTATCACACATATATATATACAGGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACAC------ATACGCATGTTCACATTCATCA
26383398 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
*
26383445 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATCCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
*
26383492 CAGTGGCCATTCGGCCTTATCACACATACG---GTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
* *
26383536 CATTGGCCATTCGGCCTTATCACACATACGCATATTCACATCCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
26383583 CAT
1 CAT
26383586 AAAATCCTAA
Statistics
Matches: 352, Mismatches: 21, Indels: 18
0.90 0.05 0.05
Matches are distributed among these distances:
44 42 0.12
47 266 0.76
53 44 0.12
ACGTcount: A:0.26, C:0.31, G:0.12, T:0.31
Consensus pattern (47 bp):
CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
Found at i:26383429 original size:147 final size:144
Alignment explanation
Indices: 26383157--26383585 Score: 651
Period size: 147 Copynumber: 3.0 Consensus size: 144
26383147 ACACATTTCG
* * * **
26383157 CATTAGCCATTCGGCCTTACCACATATATTCATGTTCACATTCATCACATTGGCCATTCGGCCTT
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCACATTGGCCATTCGGCCTT
* * *
26383222 AT--CTC-ATATATGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATACGCAT
66 ATCACACTATATATACAGGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATACGCAT
*
26383284 GTTTACATTCATCA
131 GTTCACATTCATCA
26383298 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCACATTGGCCATTCGGCCTT
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCACATTGGCCATTCGGCCTT
26383363 ATCACACATATATATATACAGGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATACG
66 ATCACAC---TATATATACAGGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATACG
26383428 CATGTTCACATTCATCA
128 CATGTTCACATTCATCA
* *
26383445 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATCCATCACAGTGGCCATTCGGCCTT
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCACATTGGCCATTCGGCCTT
26383510 ATCACAC-----ATAC-GGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATACGCAT
66 ATCACACTATATATACAGGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATACGCAT
* *
26383569 ATTCACATCCATCA
131 GTTCACATTCATCA
26383583 CAT
1 CAT
26383586 AAAATCCTAA
Statistics
Matches: 269, Mismatches: 13, Indels: 15
0.91 0.04 0.05
Matches are distributed among these distances:
138 63 0.23
139 4 0.01
141 62 0.23
143 2 0.01
147 138 0.51
ACGTcount: A:0.26, C:0.31, G:0.12, T:0.31
Consensus pattern (144 bp):
CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCACATTGGCCATTCGGCCTT
ATCACACTATATATACAGGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATACGCAT
GTTCACATTCATCA
Found at i:26387070 original size:29 final size:29
Alignment explanation
Indices: 26387036--26387095 Score: 120
Period size: 29 Copynumber: 2.1 Consensus size: 29
26387026 ACACAATCAT
26387036 CCTTCCTCACTCTCATCGGCCAGATGTCC
1 CCTTCCTCACTCTCATCGGCCAGATGTCC
26387065 CCTTCCTCACTCTCATCGGCCAGATGTCC
1 CCTTCCTCACTCTCATCGGCCAGATGTCC
26387094 CC
1 CC
26387096 ACAGGGCATC
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 31 1.00
ACGTcount: A:0.13, C:0.47, G:0.13, T:0.27
Consensus pattern (29 bp):
CCTTCCTCACTCTCATCGGCCAGATGTCC
Found at i:26389678 original size:43 final size:43
Alignment explanation
Indices: 26389553--26389681 Score: 126
Period size: 43 Copynumber: 3.0 Consensus size: 43
26389543 CAATATGTGT
* *
26389553 TTTCGTGTAAGACCAC-GTCT-GGA-TGTTGGCATCGACT-TATGA
1 TTTCGTGTAAGACC-CTGTCTGGGACAG-TGGCATCGA-TATTTGA
* * *
26389595 TTTACGTGTAAGACCATGTCTGGGACA-TCGACATTG-TATTTGA
1 TTT-CGTGTAAGACCCTGTCTGGGACAGT-GGCATCGATATTTGA
26389638 TTTCGTGTAAGACCCTGTCTGGGACAGTGGCATCGATATTTGA
1 TTTCGTGTAAGACCCTGTCTGGGACAGTGGCATCGATATTTGA
26389681 T
1 T
26389682 ACATGTAAGA
Statistics
Matches: 71, Mismatches: 8, Indels: 15
0.76 0.09 0.16
Matches are distributed among these distances:
42 31 0.44
43 32 0.45
44 8 0.11
ACGTcount: A:0.22, C:0.18, G:0.26, T:0.34
Consensus pattern (43 bp):
TTTCGTGTAAGACCCTGTCTGGGACAGTGGCATCGATATTTGA
Found at i:26389711 original size:42 final size:43
Alignment explanation
Indices: 26389556--26389712 Score: 146
Period size: 42 Copynumber: 3.7 Consensus size: 43
26389546 TATGTGTTTT
* *
26389556 CGTGTAAGACCACGTCT-GGATGTTGGCATCGACT-TATGATTTA
1 CGTGTAAGACCACGTCTGGGACGTTGGCATCGA-TATTTGA-TTA
* * * * * *
26389599 CGTGTAAGACCATGTCTGGGACATCGACATTG-TATTTGATTT
1 CGTGTAAGACCACGTCTGGGACGTTGGCATCGATATTTGATTA
26389641 CGTGTAAGACC-CTGTCTGGGACAG-TGGCATCGATATTTGA-TA
1 CGTGTAAGACCAC-GTCTGGGAC-GTTGGCATCGATATTTGATTA
* *
26389683 CATGTAAGACCACATCTGGGACGTTGGCAT
1 CGTGTAAGACCACGTCTGGGACGTTGGCAT
26389713 TGTACTAGTT
Statistics
Matches: 91, Mismatches: 16, Indels: 15
0.75 0.13 0.12
Matches are distributed among these distances:
41 1 0.01
42 53 0.58
43 28 0.31
44 9 0.10
ACGTcount: A:0.24, C:0.19, G:0.26, T:0.31
Consensus pattern (43 bp):
CGTGTAAGACCACGTCTGGGACGTTGGCATCGATATTTGATTA
Found at i:26397578 original size:17 final size:17
Alignment explanation
Indices: 26397558--26397592 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
26397548 AAAGAAAAAG
26397558 AAAAGAAAAAGCTTGCT
1 AAAAGAAAAAGCTTGCT
26397575 AAAAGAAAAAGCTTGCT
1 AAAAGAAAAAGCTTGCT
26397592 A
1 A
26397593 GGGTTTCGGC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.54, C:0.11, G:0.17, T:0.17
Consensus pattern (17 bp):
AAAAGAAAAAGCTTGCT
Found at i:26398487 original size:42 final size:41
Alignment explanation
Indices: 26398379--26398521 Score: 121
Period size: 43 Copynumber: 3.3 Consensus size: 41
26398369 AAATATGTGT
* *
26398379 TTTCATGTAAGACCAC-ATCTGGGACGTTGGCATCG-ACTTATGA
1 TTTCATGTAAGACC-CTGTCTGGGAC-ATGGCATCGTA-TT-TGA
**
26398422 TTT-ATGCGTAAGACGATGTCTGGGACATCGGCATCGTATTTGA
1 TTTCAT--GTAAGACCCTGTCTGGGACAT-GGCATCGTATTTGA
* *
26398465 TTTCATGTAAGACCCTGTCTGGGATAGTGGTATCGATATTTGA
1 TTTCATGTAAGACCCTGTCTGGGACA-TGGCATCG-TATTTGA
*
26398508 TTACATGTAAGACC
1 TTTCATGTAAGACC
26398522 ACGTTTGGGA
Statistics
Matches: 83, Mismatches: 9, Indels: 16
0.77 0.08 0.15
Matches are distributed among these distances:
42 25 0.30
43 31 0.37
44 26 0.31
45 1 0.01
ACGTcount: A:0.25, C:0.17, G:0.24, T:0.33
Consensus pattern (41 bp):
TTTCATGTAAGACCCTGTCTGGGACATGGCATCGTATTTGA
Found at i:26406102 original size:37 final size:37
Alignment explanation
Indices: 26406052--26406135 Score: 127
Period size: 37 Copynumber: 2.3 Consensus size: 37
26406042 TACTTGTTTG
26406052 GGCTAAACCTTTAAAA-TGACATCAGGTTA-TCAGTCCA
1 GGCTAAACCTTTAAAACTG-CATCAGGTTACT-AGTCCA
*
26406089 GGCTAAACCTTTAAAACTGCATTAGGTTACTAGTCCA
1 GGCTAAACCTTTAAAACTGCATCAGGTTACTAGTCCA
26406126 GGCTAAACCT
1 GGCTAAACCT
26406136 AAGTCCCGAG
Statistics
Matches: 44, Mismatches: 1, Indels: 4
0.90 0.02 0.08
Matches are distributed among these distances:
37 41 0.93
38 3 0.07
ACGTcount: A:0.33, C:0.23, G:0.17, T:0.27
Consensus pattern (37 bp):
GGCTAAACCTTTAAAACTGCATCAGGTTACTAGTCCA
Found at i:26406421 original size:120 final size:120
Alignment explanation
Indices: 26406138--26406427 Score: 271
Period size: 120 Copynumber: 2.4 Consensus size: 120
26406128 CTAAACCTAA
* * ** * * * *
26406138 GTCCCGAGTATCCTCAATACATCAATTGCTTGTCTGAGCTAAAAATATATACATTTTAAGTTACC
1 GTCCCAAGTATCATCAATACATCAATTGCTCATCAGAGCTGAAAATATATACATGTCAAGTTACC
* * * * * * * *
26406203 CGTACGGGATAAACCTTTAAATTAACATTAGATTGCTCATTCGAGCTAAACCTGG
66 CATACGAGATAAACCTTTAAAATAACATAAGATTACTCACTCGAGCAAAACATGG
* ** * ** * *
26406258 GTCCCAAGTATAATTTATACATCAATTGCTCCTCATTGTTGAAAATATATACATGTCAAGTTACT
1 GTCCCAAGTATCATCAATACATCAATTGCTCATCAGAGCTGAAAATATATACATGTCAAGTTACC
* * *
26406323 CAT-CTGAGCTAAACCTTTAAAATGACATCAAG-TTACTCAACT-GAGCAAAACATGT
66 CATAC-GAGATAAACCTTTAAAATAACAT-AAGATTACTC-ACTCGAGCAAAACATGG
* *
26406378 GTCCCAAGTATCATCGATACATCAATTGCTCATCCGAGCTGAAAATATAT
1 GTCCCAAGTATCATCAATACATCAATTGCTCATCAGAGCTGAAAATATAT
26406428 CAATGTTAGG
Statistics
Matches: 133, Mismatches: 34, Indels: 6
0.77 0.20 0.03
Matches are distributed among these distances:
119 1 0.01
120 128 0.96
121 4 0.03
ACGTcount: A:0.34, C:0.21, G:0.13, T:0.31
Consensus pattern (120 bp):
GTCCCAAGTATCATCAATACATCAATTGCTCATCAGAGCTGAAAATATATACATGTCAAGTTACC
CATACGAGATAAACCTTTAAAATAACATAAGATTACTCACTCGAGCAAAACATGG
Found at i:26409087 original size:19 final size:18
Alignment explanation
Indices: 26409057--26409098 Score: 50
Period size: 20 Copynumber: 2.3 Consensus size: 18
26409047 AGAAGCAGCC
26409057 CACAATTTTCAT-TATTT
1 CACAATTTTCATCTATTT
26409074 CACACATTTATCATCTATTT
1 CACA-ATTT-TCATCTATTT
*
26409094 TACAA
1 CACAA
26409099 CTTATGCAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
17 4 0.19
18 4 0.19
19 5 0.24
20 8 0.38
ACGTcount: A:0.33, C:0.21, G:0.00, T:0.45
Consensus pattern (18 bp):
CACAATTTTCATCTATTT
Found at i:26409147 original size:16 final size:16
Alignment explanation
Indices: 26409126--26409159 Score: 68
Period size: 16 Copynumber: 2.1 Consensus size: 16
26409116 TTAGTTGGGG
26409126 TTTCCATGAAAACTAC
1 TTTCCATGAAAACTAC
26409142 TTTCCATGAAAACTAC
1 TTTCCATGAAAACTAC
26409158 TT
1 TT
26409160 CACAAAAGTT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.35, C:0.24, G:0.06, T:0.35
Consensus pattern (16 bp):
TTTCCATGAAAACTAC
Found at i:26414873 original size:21 final size:20
Alignment explanation
Indices: 26414844--26414882 Score: 60
Period size: 21 Copynumber: 1.9 Consensus size: 20
26414834 CTTTAAAACA
26414844 GGGCACACGCCCGTGTGGAT
1 GGGCACACGCCCGTGTGGAT
*
26414864 GGGCAACACGCCTGTGTGG
1 GGGC-ACACGCCCGTGTGG
26414883 CCATTAGAAC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 4 0.24
21 13 0.76
ACGTcount: A:0.15, C:0.28, G:0.41, T:0.15
Consensus pattern (20 bp):
GGGCACACGCCCGTGTGGAT
Found at i:26416270 original size:46 final size:47
Alignment explanation
Indices: 26416069--26416331 Score: 159
Period size: 46 Copynumber: 5.6 Consensus size: 47
26416059 GATGTCATAC
* * * *
26416069 CCCAGACATGGTCTTACACTGGTTCTCATGCT-AA-GTCGACGCCATAT
1 CCCAGACAT-GTCTTACACTGGCTCTCAT-CTCAATGCCGATGCCATGT
* * * * ** * * *
26416116 CCAAGACATGGTCTTACACTGACTCCCACGTATCTGTGCTGATGCTATTT
1 CCCAGACAT-GTCTTACACTGGCTCTCA--TCTCAATGCCGATGCCATGT
* * * * *
26416166 CCCAGACATGGTCTTATACTGACACATCATGT--A-GCCAATG-CAT-T
1 CCCAGACAT-GTCTTACACTGGCTC-TCATCTCAATGCCGATGCCATGT
* *
26416210 CCCAGACATGTCTTACACTGGCT-TACATCTCGA-GACCGATG-TATGT
1 CCCAGACATGTCTTACACTGGCTCT-CATCTCAATG-CCGATGCCATGT
* * *
26416256 CCCAGGCATTTCTTACACTAGCTCTCATCTCAATGCCGATGCCATGT
1 CCCAGACATGTCTTACACTGGCTCTCATCTCAATGCCGATGCCATGT
26416303 CCCAGACATGGTCTTACACTGGCTCTCAT
1 CCCAGACAT-GTCTTACACTGGCTCTCAT
26416332 AATGTGGTTG
Statistics
Matches: 167, Mismatches: 35, Indels: 27
0.73 0.15 0.12
Matches are distributed among these distances:
41 1 0.01
42 4 0.02
43 11 0.07
44 12 0.07
45 9 0.05
46 39 0.23
47 38 0.23
48 18 0.11
49 3 0.02
50 30 0.18
51 2 0.01
ACGTcount: A:0.24, C:0.30, G:0.17, T:0.29
Consensus pattern (47 bp):
CCCAGACATGTCTTACACTGGCTCTCATCTCAATGCCGATGCCATGT
Done.